Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 110 of 132
Found at i:33389966 original size:23 final size:24
Alignment explanation
Indices: 33389939--33390006 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 24
33389929 ATTTGAGAAA
33389939 TAATT-TTTCAGTTAAACTCTGTT
1 TAATTATTTCAGTTAAACTCTGTT
* *
33389962 TAATTGTTTCAATTAAACTCTGTT
1 TAATTATTTCAGTTAAACTCTGTT
* * *
33389986 TATTTATTTGAGTCAAACTCT
1 TAATTATTTCAGTTAAACTCT
33390007 TATTAGTCTA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
23 5 0.13
24 33 0.87
ACGTcount: A:0.28, C:0.13, G:0.09, T:0.50
Consensus pattern (24 bp):
TAATTATTTCAGTTAAACTCTGTT
Found at i:33404702 original size:194 final size:195
Alignment explanation
Indices: 33404367--33404729 Score: 500
Period size: 194 Copynumber: 1.9 Consensus size: 195
33404357 AAACTGACGC
* * *
33404367 GATGGATGAGGTACCGCATATGTTGCGAGTACTCGACAGCTCGTGTGAGCAGCATCATGAGTTGG
1 GATGGATGAGGTACCGCATATGTTACGAGTACTCGACAGCTCGTGTGAGCAGCATCATGAGTCGA
* * ** *
33404432 GAAATGAGAAAGAATCTAAGAAAGGATTACAAACCCTACGATGGCTGAGATTTATGCATAAGTGC
66 AAAAGGAGAAAGAATCTAAGAAAGGATTACAAACCCTACGACAGCTGAGATTTATGCATAAATGC
33404497 AATTTCTCGACAGCTCGTGTGAGCAGCATCGTT-AGGGAACAGTTATATGCACAGATACCGTATT
131 AATTTCTCGACAGCTCGTGTGAGCAGCATCGTTAAGGGAACAGTTATATGCACAGATACCGTATT
* * * *
33404561 GATGGCTGAGGTATCGCATATGTTACGAGTCCTCGACAGCTCGTGTGAGTAGCATCATGAGTCGA
1 GATGGATGAGGTACCGCATATGTTACGAGTACTCGACAGCTCGTGTGAGCAGCATCATGAGTCGA
* * * ** *
33404626 AAAAGGAGATATGAATCCT-A-AATGGATTATAGGCCCTACGACAGCTGAGATTTATGCTTAAAT
66 AAAAGGAGA-AAGAAT-CTAAGAAAGGATTACAAACCCTACGACAGCTGAGATTTATGCATAAAT
*
33404689 GC-ATATTCTCGACAGCTCGTGTGAGCAGCATTGTTAAGGGA
129 GCAAT-TTCTCGACAGCTCGTGTGAGCAGCATCGTTAAGGGA
33404730 CAATTTACAG
Statistics
Matches: 146, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
193 2 0.01
194 131 0.90
195 11 0.08
196 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (195 bp):
GATGGATGAGGTACCGCATATGTTACGAGTACTCGACAGCTCGTGTGAGCAGCATCATGAGTCGA
AAAAGGAGAAAGAATCTAAGAAAGGATTACAAACCCTACGACAGCTGAGATTTATGCATAAATGC
AATTTCTCGACAGCTCGTGTGAGCAGCATCGTTAAGGGAACAGTTATATGCACAGATACCGTATT
Found at i:33405591 original size:21 final size:22
Alignment explanation
Indices: 33405560--33405615 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
33405550 TGGAGTTTTT
*
33405560 AGTACCGGTAGAAGCT-TCACT-
1 AGTATCGGTAGAAGCTCTCA-TA
*
33405581 TGTATCGGTAGAA-CTCTCATA
1 AGTATCGGTAGAAGCTCTCATA
33405602 AGTATCGGTAGAAG
1 AGTATCGGTAGAAG
33405616 TCTGCACTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 3 0.10
21 26 0.90
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (22 bp):
AGTATCGGTAGAAGCTCTCATA
Found at i:33410029 original size:21 final size:21
Alignment explanation
Indices: 33409998--33410051 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
33409988 GGAGTTTTTA
*
33409998 GTATCGGTAGAAGCATGACTT
1 GTATCGGTAGAAGCATCACTT
* * *
33410019 GTTTTGGTAGAAGCTTCACTT
1 GTATCGGTAGAAGCATCACTT
33410040 GTATCGGTAGAA
1 GTATCGGTAGAA
33410052 CTCTCATAAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (21 bp):
GTATCGGTAGAAGCATCACTT
Found at i:33411090 original size:26 final size:25
Alignment explanation
Indices: 33411056--33411116 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
33411046 GAAAATAGAG
*
33411056 TGGACAAAACAACAATCATGAAAATA
1 TGGACAAAACAA-AACCATGAAAATA
* * *
33411082 TGGATAAAATAAAACCATGAAACTA
1 TGGACAAAACAAAACCATGAAAATA
33411107 TGGACAAAAC
1 TGGACAAAAC
33411117 CAAGATAATG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
25 19 0.66
26 10 0.34
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.16
Consensus pattern (25 bp):
TGGACAAAACAAAACCATGAAAATA
Found at i:33412097 original size:25 final size:27
Alignment explanation
Indices: 33412062--33412111 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
33412052 CACAATCCAA
*
33412062 AAACTTTAA-TTATAAAAAACTTATTT
1 AAACTTTAATTTAAAAAAAACTTATTT
33412088 AAAC-TTAATTTAAAAAAAACTTAT
1 AAACTTTAATTTAAAAAAAACTTAT
33412112 GCTAAGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (27 bp):
AAACTTTAATTTAAAAAAAACTTATTT
Found at i:33414019 original size:12 final size:12
Alignment explanation
Indices: 33413986--33414024 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
33413976 ATAATTTATT
33413986 AAATT-TATTAA
1 AAATTATATTAA
33413997 AAA-TATATTAA
1 AAATTATATTAA
*
33414008 AAATTATGTTAA
1 AAATTATATTAA
33414020 AAATT
1 AAATT
33414025 TCAACAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 1 0.04
11 12 0.48
12 12 0.48
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (12 bp):
AAATTATATTAA
Found at i:33415704 original size:12 final size:11
Alignment explanation
Indices: 33415676--33415742 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 11
33415666 TAGCTGTAAT
*
33415676 TTTTTTAAAAA
1 TTTTTTAATAA
*
33415687 TATTTTAATATA
1 TTTTTTAATA-A
33415699 TTTTTTAATAA
1 TTTTTTAATAA
* * *
33415710 -TTTATATTTA
1 TTTTTTAATAA
*
33415720 -TTTTTAA-GA
1 TTTTTTAATAA
33415729 TTTTTTAATAA
1 TTTTTTAATAA
33415740 TTT
1 TTT
33415743 ATATTTATTT
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
9 1 0.02
10 19 0.44
11 13 0.30
12 10 0.23
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (11 bp):
TTTTTTAATAA
Found at i:33415708 original size:20 final size:20
Alignment explanation
Indices: 33415684--33415742 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
33415674 ATTTTTTTAA
33415684 AAATATTTTAATATATTTTT
1 AAATATTTTAATATATTTTT
* * *
33415704 TAATAATTTATATTTATTTTT
1 AAATATTTTA-ATATATTTTT
*
33415725 AAGATTTTTTAATA-ATTT
1 AA-ATATTTTAATATATTT
33415743 ATATTTATTT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
20 12 0.40
21 12 0.40
22 6 0.20
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
AAATATTTTAATATATTTTT
Found at i:33415717 original size:17 final size:17
Alignment explanation
Indices: 33415695--33415748 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
33415685 AATATTTTAA
33415695 TATATTTTTTAATAATT
1 TATATTTTTTAATAATT
*
33415712 TATATTTATT--T--TT
1 TATATTTTTTAATAATT
* *
33415725 AAGATTTTTTAATAATT
1 TATATTTTTTAATAATT
33415742 TATATTT
1 TATATTT
33415749 ATTTTTAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 8
0.66 0.15 0.20
Matches are distributed among these distances:
13 9 0.33
15 2 0.07
17 16 0.59
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
TATATTTTTTAATAATT
Found at i:33415733 original size:30 final size:30
Alignment explanation
Indices: 33415698--33415756 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
33415688 ATTTTAATAT
33415698 ATTTTTTAATAATTTATATTTATTTTTAAG
1 ATTTTTTAATAATTTATATTTATTTTTAAG
33415728 ATTTTTTAATAATTTATATTTATTTTTAA
1 ATTTTTTAATAATTTATATTTATTTTTAA
33415757 AAATGATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (30 bp):
ATTTTTTAATAATTTATATTTATTTTTAAG
Found at i:33425910 original size:10 final size:10
Alignment explanation
Indices: 33425882--33425913 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
33425872 TTTCACGCTG
*
33425882 TTATTTTTGT
1 TTATTTTTTT
33425892 TTATTTTTTT
1 TTATTTTTTT
33425902 TTATTTTTTT
1 TTATTTTTTT
33425912 TT
1 TT
33425914 CTTCTCAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (10 bp):
TTATTTTTTT
Found at i:33454072 original size:16 final size:16
Alignment explanation
Indices: 33454050--33454089 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
33454040 ATAAAACTTT
*
33454050 TATATTTTAAAAGTTA
1 TATATTTTAAAAATTA
*
33454066 -ATAATTTAAAAATTA
1 TATATTTTAAAAATTA
33454081 TATATTTTA
1 TATATTTTA
33454090 TTATCATCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
TATATTTTAAAAATTA
Found at i:33459162 original size:23 final size:25
Alignment explanation
Indices: 33459123--33459184 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 25
33459113 GGGTTTTAAG
* *
33459123 TAAATATT-AATGATTAATTTAAAAA
1 TAAATATTAAAT-TTTAATATAAAAA
33459148 -AAAT-TTAAATTTTAATATAAAAA
1 TAAATATTAAATTTTAATATAAAAA
*
33459171 TAATTATTAAATTT
1 TAAATATTAAATTT
33459185 AAAGATTAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 13 0.42
24 10 0.32
25 8 0.26
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
TAAATATTAAATTTTAATATAAAAA
Found at i:33462163 original size:20 final size:20
Alignment explanation
Indices: 33462137--33462206 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
33462127 TTACCTTGGG
* *
33462137 ACTTCTACCGATAGAACTCC
1 ACTTCTACCGATACAACTAC
* *
33462157 TCTTCTACTGATACAACTAC
1 ACTTCTACCGATACAACTAC
* * *
33462177 AGTTCTACCGATACAAGTAT
1 ACTTCTACCGATACAACTAC
*
33462197 GCTTCTACCG
1 ACTTCTACCG
33462207 GAACAATTAA
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.29, C:0.30, G:0.11, T:0.30
Consensus pattern (20 bp):
ACTTCTACCGATACAACTAC
Found at i:33468977 original size:23 final size:23
Alignment explanation
Indices: 33468942--33468994 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
33468932 TAAAAATATA
*
33468942 TAAAATTATTAAATAT-TAAATT
1 TAAAATAATTAAATATATAAATT
**
33468964 TAAAATAATATAAATATATATTTT
1 TAAAATAAT-TAAATATATAAATT
33468988 TAAAATA
1 TAAAATA
33468995 TAGACCAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 8 0.31
23 7 0.27
24 11 0.42
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
TAAAATAATTAAATATATAAATT
Found at i:33471392 original size:31 final size:31
Alignment explanation
Indices: 33471344--33471405 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
33471334 ATTTATAACT
33471344 AATTTTTAAAGGATT-AAATCAAAATTTTATC
1 AATTTTTAAAGGATTAAAAT-AAAATTTTATC
* *
33471375 AATTTTTAGGAGG-TTAAAATATAATTTTATC
1 AATTTTTA-AAGGATTAAAATAAAATTTTATC
33471406 TTTATTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 20 0.74
32 7 0.26
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.44
Consensus pattern (31 bp):
AATTTTTAAAGGATTAAAATAAAATTTTATC
Found at i:33474857 original size:17 final size:17
Alignment explanation
Indices: 33474835--33474868 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
33474825 AGGATCTTAA
33474835 ATCTCCCAACTTAAGCC
1 ATCTCCCAACTTAAGCC
33474852 ATCTCCCAACTTAAGCC
1 ATCTCCCAACTTAAGCC
33474869 TTAACCACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.41, G:0.06, T:0.24
Consensus pattern (17 bp):
ATCTCCCAACTTAAGCC
Found at i:33481478 original size:57 final size:56
Alignment explanation
Indices: 33481386--33481544 Score: 174
Period size: 58 Copynumber: 2.8 Consensus size: 56
33481376 TATTGAATTT
* * * *
33481386 GAATATTAATTTGCGAGCGATTTTATACTTAGAAAATTTCCTAAAATAATATGTTGG
1 GAATATGAATTCGCGAGCTATTTTATACTTAGAAAATTT-CTAAAATAATAAGTTGG
** * *
33481443 GAATATGAATTCGCGAGCTATTTTATTTTTTGAAAAATTTTCTAAGATAATAAGTTGG
1 GAATATGAATTCGCGAGCTATTTTATACTTAG-AAAA-TTTCTAAAATAATAAGTTGG
* * * * *
33481501 GAATGTGAATTCGAGAGTTGTTTTATACTTGGAAAATTTCTAAA
1 GAATATGAATTCGCGAGCTATTTTATACTTAGAAAATTTCTAAA
33481545 GAGCAACCAA
Statistics
Matches: 84, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
56 7 0.08
57 30 0.36
58 44 0.52
59 3 0.04
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.40
Consensus pattern (56 bp):
GAATATGAATTCGCGAGCTATTTTATACTTAGAAAATTTCTAAAATAATAAGTTGG
Found at i:33481743 original size:69 final size:69
Alignment explanation
Indices: 33481605--33481743 Score: 163
Period size: 69 Copynumber: 2.0 Consensus size: 69
33481595 TGGTTTTTAT
* * * * * *
33481605 CTTGCGAGCCCTAGTGTGACAGTTGGGAGTTTTGCTCTCGCTAATTATGTTGGAAGTTGCGTTTC
1 CTTGAGAGCCCTAGTATGACAGTTGGGAGTTTTACTCTCGCTAACTATGTTGGAAGCTGCGCTTC
33481670 TTCG
66 TTCG
* * * * *
33481674 CTTGAGAGCCTTAGTATGACAGTTGGGAGTTTTACTTTTGCTAACTGTGTTGGAGGCTGCGGCTT
1 CTTGAGAGCCCTAGTATGACAGTTGGGAGTTTTACTCTCGCTAACTATGTTGGAAGCTGC-GCTT
33481739 -TTCG
65 CTTCG
33481743 C
1 C
33481744 CTACGAGTCT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
69 55 0.95
70 3 0.05
ACGTcount: A:0.15, C:0.18, G:0.29, T:0.37
Consensus pattern (69 bp):
CTTGAGAGCCCTAGTATGACAGTTGGGAGTTTTACTCTCGCTAACTATGTTGGAAGCTGCGCTTC
TTCG
Found at i:33484393 original size:19 final size:19
Alignment explanation
Indices: 33484369--33484406 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33484359 TATTGTTTCT
33484369 TTGTGAATACAATAGAGAG
1 TTGTGAATACAATAGAGAG
33484388 TTGTGAATACAATAGAGAG
1 TTGTGAATACAATAGAGAG
33484407 CATTTACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.26, T:0.26
Consensus pattern (19 bp):
TTGTGAATACAATAGAGAG
Found at i:33488894 original size:16 final size:15
Alignment explanation
Indices: 33488868--33488898 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
33488858 CCAAAATTTC
33488868 ATTTTATTATTAATA
1 ATTTTATTATTAATA
33488883 ATTTTAATTATTAATA
1 ATTTT-ATTATTAATA
33488899 GTAGATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTTATTATTAATA
Found at i:33513063 original size:59 final size:56
Alignment explanation
Indices: 33512907--33513102 Score: 158
Period size: 59 Copynumber: 3.3 Consensus size: 56
33512897 TTGGGTTTTA
* * * * *
33512907 GGGGTAAAATGGTAATTTTTGTGAAATCGGGGCTAAAAATGGAATTTGGAAAGTTT
1 GGGGAAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGAAATTTGGAAAGTTC
** * ** *
33512963 GGGGAATACAATGGTAAATTTTGGCAAAAACAAGGTCAAAAATGAAATTTTGGAAAGTTC
1 GGGGAA-A-AATGGT-AATTTTGGTGAAATCGGGGTTAAAAATGAAA-TTTGGAAAGTTC
* * ** * *
33513023 GGAGGCAAAACGGTAAGTTTTGGTGAAATCGGGGTTAAAAATGGGATTTAGGGAAGTTT
1 GG-GGAAAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAAATGAAATTT-GGAAAGTTC
33513082 GAGGGTAAAAATGGTAATTTT
1 G-GGG-AAAAATGGTAATTTT
33513103 TGAAAGTTTC
Statistics
Matches: 106, Mismatches: 25, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
56 5 0.05
57 1 0.01
58 11 0.10
59 62 0.58
60 24 0.23
61 3 0.03
ACGTcount: A:0.37, C:0.05, G:0.30, T:0.29
Consensus pattern (56 bp):
GGGGAAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGAAATTTGGAAAGTTC
Found at i:33513117 original size:30 final size:29
Alignment explanation
Indices: 33513076--33513415 Score: 238
Period size: 30 Copynumber: 11.3 Consensus size: 29
33513066 GGATTTAGGG
* *
33513076 AAGTTTGAGGGTAAAAATGGTAATTTTTG-A
1 AAGTTT-AGGGTCAAAAT-GTAATTTTGGAA
* *
33513106 AAGTTTCAGGGTCAAAGTATAATTTTGGAA
1 AAGTTT-AGGGTCAAAATGTAATTTTGGAA
*
33513136 AAGTTTTGGAGTCAAAATGTAATTTTGGAA
1 AAGTTTAGG-GTCAAAATGTAATTTTGGAA
* *
33513166 AAGTTTTGGGGTCAAAATATAATTTTGGAA
1 AAG-TTTAGGGTCAAAATGTAATTTTGGAA
* *
33513196 AAGTTTAGGGGTTAAAATGTAATTTT-TAGA
1 AAGTTTA-GGGTCAAAATGTAATTTTGGA-A
* * * * **
33513226 AAGTTTTGGGGTTAAAATATAATTCTCAAA
1 AAG-TTTAGGGTCAAAATGTAATTTTGGAA
* * * * *
33513256 AAGTTTTGGGGGCGAAATGTAATTTCGAAA
1 AAG-TTTAGGGTCAAAATGTAATTTTGGAA
* *
33513286 AAGCTTTAAGGTCAAAATATAATTTTGGAA
1 AAG-TTTAGGGTCAAAATGTAATTTTGGAA
**
33513316 AAGTTTAGGGGTCAAAATGTAATTTTCAAA
1 AAGTTTA-GGGTCAAAATGTAATTTTGGAA
* * *
33513346 AAGTTTTAAGGTCAAAATATAATTTT-TAGA
1 AAG-TTTAGGGTCAAAATGTAATTTTGGA-A
* ** *
33513376 AAGTTTTGGAGTTGAAATGTAATTTTTGGAC
1 AAGTTTAGG-GTCAAAATGTAA-TTTTGGAA
33513407 AA-TTTAGGG
1 AAGTTTAGGG
33513416 ACTTACAAAG
Statistics
Matches: 249, Mismatches: 48, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
29 24 0.10
30 205 0.82
31 19 0.08
32 1 0.00
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.36
Consensus pattern (29 bp):
AAGTTTAGGGTCAAAATGTAATTTTGGAA
Found at i:33513228 original size:120 final size:119
Alignment explanation
Indices: 33513076--33513401 Score: 404
Period size: 120 Copynumber: 2.7 Consensus size: 119
33513066 GGATTTAGGG
* * *
33513076 AAGTTT-GAGGGTAAAAATGGTAATTTTT-GAAAGTTTCAGGGTCAAAGTATAATTTTGGAAAAG
1 AAGTTTAG-GGGTAAAAAT-GTAATTTTTAGAAAGTTTTAGGGTCAAAATATAATTTT-AAAAAG
* * * **
33513139 TTTTGGAGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAA
63 TTTTGGAGTCGAAATGTAATTTTGAAAAAGCTTTAAGGTCAAAATATAATTTTGGAA
* * * *
33513196 AAGTTTAGGGGTTAAAATGTAATTTTTAGAAAGTTTTGGGGTTAAAATATAATTCTCAAAAAGTT
1 AAGTTTAGGGGTAAAAATGTAATTTTTAGAAAGTTTTAGGGTCAAAATATAATT-TTAAAAAGTT
* * *
33513261 TTGGGGGCGAAATGTAATTTCGAAAAAGCTTTAAGGTCAAAATATAATTTTGGAA
65 TTGGAGTCGAAATGTAATTTTGAAAAAGCTTTAAGGTCAAAATATAATTTTGGAA
* * * * *
33513316 AAGTTTAGGGGTCAAAATGTAATTTTCAAAAAGTTTTAAGGTCAAAATATAATTTTTAGAAAGTT
1 AAGTTTAGGGGTAAAAATGTAATTTTTAGAAAGTTTTAGGGTCAAAATATAA-TTTTAAAAAGTT
*
33513381 TTGGAGTTGAAATGTAATTTT
65 TTGGAGTCGAAATGTAATTTT
33513402 TGGACAATTT
Statistics
Matches: 175, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
119 9 0.05
120 162 0.93
121 4 0.02
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.37
Consensus pattern (119 bp):
AAGTTTAGGGGTAAAAATGTAATTTTTAGAAAGTTTTAGGGTCAAAATATAATTTTAAAAAGTTT
TGGAGTCGAAATGTAATTTTGAAAAAGCTTTAAGGTCAAAATATAATTTTGGAA
Found at i:33513379 original size:60 final size:60
Alignment explanation
Indices: 33513079--33513401 Score: 337
Period size: 60 Copynumber: 5.4 Consensus size: 60
33513069 TTTAGGGAAG
* ** * *
33513079 TTTGAGGGTAAAAATGGTAATTTT-TGAAAGTTTCAGGGTCAAAGTATAATTTTGGAAAAGT
1 TTTG-GGGTCAAAAT-GTAATTTTCAAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGT
* ** *
33513140 TTTGGAGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGT
1 TTTGGGGTCAAAATGTAATTTTCAAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGT
* * * * * * * **
33513200 TTAGGGGTTAAAATGTAATTTTTAGAAAGTTTTGGGGTTAAAATATAATTCTCAAAAAGT
1 TTTGGGGTCAAAATGTAATTTTCAAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGT
* * * *
33513260 TTTGGGGGCGAAATGTAA-TTTCGAAAAAGCTTTAAGGTCAAAATATAATTTTGGAAAAGT
1 TTTGGGGTCAAAATGTAATTTTC-AAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGT
* * *
33513320 TTAGGGGTCAAAATGTAATTTTCAAAAAGTTTTAAGGTCAAAATATAATTTT-TAGAAAGT
1 TTTGGGGTCAAAATGTAATTTTCAAAAAGTTTTAGGGTCAAAATATAATTTTGGA-AAAGT
* **
33513380 TTTGGAGTTGAAATGTAATTTT
1 TTTGGGGTCAAAATGTAATTTT
33513402 TGGACAATTT
Statistics
Matches: 219, Mismatches: 39, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
59 12 0.05
60 199 0.91
61 8 0.04
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (60 bp):
TTTGGGGTCAAAATGTAATTTTCAAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGT
Found at i:33513399 original size:90 final size:90
Alignment explanation
Indices: 33513125--33513415 Score: 284
Period size: 90 Copynumber: 3.2 Consensus size: 90
33513115 GGTCAAAGTA
* * **
33513125 TAATTTTGGAAAAGTTTTGGAGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAA-T
1 TAATTTTGGAAAAGTTTAGGGGTCAAAATGTAATTTTCAAAAAGTTTTGGGGTCAAAATATAATT
* * *
33513189 TTTGGAAAAGTTTAGGGGTTAAAATG
66 TTTAG-AAAGTTTTGGAGTTAAAATG
* * * * * * * *
33513215 TAATTTT-TAGAAAGTTTTGGGGTTAAAATATAATTCTCAAAAAGTTTTGGGGGCGAAATGTAAT
1 TAATTTTGGA-AAAGTTTAGGGGTCAAAATGTAATTTTCAAAAAGTTTTGGGGTCAAAATATAAT
** * * * * *
33513279 TTCGAAAAAGCTTT-AAGGTCAAAATA
65 TTTTAGAAAGTTTTGGA-GTTAAAATG
**
33513305 TAATTTTGGAAAAGTTTAGGGGTCAAAATGTAATTTTCAAAAAGTTTTAAGGTCAAAATATAATT
1 TAATTTTGGAAAAGTTTAGGGGTCAAAATGTAATTTTCAAAAAGTTTTGGGGTCAAAATATAATT
*
33513370 TTTAGAAAGTTTTGGAGTTGAAATG
66 TTTAGAAAGTTTTGGAGTTAAAATG
*
33513395 TAATTTTTGGACAA-TTTAGGG
1 TAA-TTTTGGAAAAGTTTAGGG
33513416 ACTTACAAAG
Statistics
Matches: 156, Mismatches: 39, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
89 1 0.01
90 142 0.91
91 13 0.08
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (90 bp):
TAATTTTGGAAAAGTTTAGGGGTCAAAATGTAATTTTCAAAAAGTTTTGGGGTCAAAATATAATT
TTTAGAAAGTTTTGGAGTTAAAATG
Found at i:33515299 original size:173 final size:173
Alignment explanation
Indices: 33515010--33515358 Score: 671
Period size: 173 Copynumber: 2.0 Consensus size: 173
33515000 CAGGAAATGG
33515010 TGGAGATTTGTAACAGTGGTGCAGGAGCAAGTTGGCTGGTGTTGGTGGTTGATGATGGTGATGGA
1 TGGAGATTTGTAACAGTGGTGCAGGAGCAAGTTGGCTGGTGTTGGTGGTTGATGATGGTGATGGA
*
33515075 GCTGCTGACGTGGCGATCCCTGAGTGGCTGAGGTGGTCGACCAGTAGGAACAAGTGGGCAGATCA
66 GCTGCTGACGTGGCGATCCCTGAGTGGCTGAGGTGGTCGACCAATAGGAACAAGTGGGCAGATCA
*
33515140 GATTTTTTTTCTGCTTTGGGCTATTGTAATTTGGGCTTGAGTT
131 GATTTTTTTTCTGCTTTGGGCTACTGTAATTTGGGCTTGAGTT
*
33515183 TGGAGATTTGTAGCAGTGGTGCAGGAGCAAGTTGGCTGGTGTTGGTGGTTGATGATGGTGATGGA
1 TGGAGATTTGTAACAGTGGTGCAGGAGCAAGTTGGCTGGTGTTGGTGGTTGATGATGGTGATGGA
33515248 GCTGCTGACGTGGCGATCCCTGAGTGGCTGAGGTGGTCGACCAATAGGAACAAGTGGGCAGATCA
66 GCTGCTGACGTGGCGATCCCTGAGTGGCTGAGGTGGTCGACCAATAGGAACAAGTGGGCAGATCA
33515313 GATTTTTTTTCTGCTTTGGGCTACTGTAATTTGGGCTTGAGTT
131 GATTTTTTTTCTGCTTTGGGCTACTGTAATTTGGGCTTGAGTT
33515356 TGG
1 TGG
33515359 GTTATTTAAG
Statistics
Matches: 173, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
173 173 1.00
ACGTcount: A:0.18, C:0.13, G:0.37, T:0.32
Consensus pattern (173 bp):
TGGAGATTTGTAACAGTGGTGCAGGAGCAAGTTGGCTGGTGTTGGTGGTTGATGATGGTGATGGA
GCTGCTGACGTGGCGATCCCTGAGTGGCTGAGGTGGTCGACCAATAGGAACAAGTGGGCAGATCA
GATTTTTTTTCTGCTTTGGGCTACTGTAATTTGGGCTTGAGTT
Found at i:33515429 original size:29 final size:28
Alignment explanation
Indices: 33515369--33515430 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 28
33515359 GTTATTTAAG
* *
33515369 TTGGGCCAATTGGGCCTTTGTAATTGTAT
1 TTGGCCCAATTGGG-CTTTGTAATTGGAT
33515398 TTGGCCCAATTGGG-TTTGTACATTGGACT
1 TTGGCCCAATTGGGCTTTGTA-ATTGGA-T
33515427 TTGG
1 TTGG
33515431 GCTTTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 6 0.21
28 5 0.17
29 18 0.62
ACGTcount: A:0.16, C:0.15, G:0.29, T:0.40
Consensus pattern (28 bp):
TTGGCCCAATTGGGCTTTGTAATTGGAT
Found at i:33515499 original size:17 final size:18
Alignment explanation
Indices: 33515472--33515515 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
33515462 ATTTAAATTG
33515472 AATTCAAAATAAATTTAA
1 AATTCAAAATAAATTTAA
33515490 AATT-AAAATAAATTT-A
1 AATTCAAAATAAATTTAA
*
33515506 ATTTCAAAAT
1 AATTCAAAAT
33515516 GGTTTGGGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 4 0.17
17 16 0.67
18 4 0.17
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTCAAAATAAATTTAA
Found at i:33515903 original size:91 final size:91
Alignment explanation
Indices: 33515762--33515927 Score: 323
Period size: 91 Copynumber: 1.8 Consensus size: 91
33515752 CGAGGCTTTA
33515762 TCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGA
1 TCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGA
33515827 GGATAGGAAATGATGTTGATGCTCTG
66 GGATAGGAAATGATGTTGATGCTCTG
*
33515853 TCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCACCTTTACTTCAATTTCAAGA
1 TCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGA
33515918 GGATAGGAAA
66 GGATAGGAAA
33515928 AGATCTTGCT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 74 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Consensus pattern (91 bp):
TCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGA
GGATAGGAAATGATGTTGATGCTCTG
Found at i:33516156 original size:152 final size:152
Alignment explanation
Indices: 33515853--33517919 Score: 2982
Period size: 152 Copynumber: 13.5 Consensus size: 152
33515843 TGATGCTCTG
* *
33515853 TCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCACCTTTACTTCAATTTCAAGA
1 TCTTACTCTTACTTCAATTTC--AGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGA
* * *
33515918 GGATAGGAAAAGATCTTGCTCTTACTTCAATTTTAGAGATAAAGACTTGATATCCAGCTTTACTT
64 GGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTT
*
33515983 CAATTTCAAGAGGATTGGAAATGA
129 CAATTTCAAGAGGATAGGAAATGA
* * *
33516007 TCTTAATCTTACTTCAATTTCAGAAATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGG
* * * *
33516072 ATAGGAAATGATCTTACTCTTACTTCAATTTCAGAGATAGAGACTTGATATCTAGCTTTACTTCA
66 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCA
*
33516137 ATTTCAAAAGGATAGGAAATGA
131 ATTTCAAGAGGATAGGAAATGA
* * *
33516159 TCTTTCTCTTACTTCAATTTTAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGG
* *
33516224 ATAGGAAATGATCTTGCTCTTACTTCAATTTTAGAGATAAAGACTTGATATCCAGCTTTACTTCA
66 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCA
33516289 ATTTCAAGAGGATAGGAAATGA
131 ATTTCAAGAGGATAGGAAATGA
* *
33516311 TCTTACTCTTACTTCAATTTCAGAAATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGG
* * **
33516376 ATAGGAAATGATCTTACTCTTACTTCAATTTCAGAGATAGAGACTTGATATCCAGTTTTACTTCA
66 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCA
*
33516441 ATTTCAAAAGGATAGGAAATGA
131 ATTTCAAGAGGATAGGAAATGA
* *
33516463 TCTTACTCTTACTTCAATTTTAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGG
*
33516528 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCA
66 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCA
33516593 ATTTCAAGAGGATAGGAAATGA
131 ATTTCAAGAGGATAGGAAATGA
* *
33516615 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGG
1 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGG
* * *
33516680 ATAGGAAATGATCTTGCTCTTACTTTAATTTCAGAGATAGAGACTTG-TCATCCAACTCTACTTC
66 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAACTTTACTTC
33516744 AATTTC-A-A-G--AGGAAATGA
130 AATTTCAAGAGGATAGGAAATGA
* *
33516762 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTG-TCATCCAACTCTACTTCAATTTC-A-A-
1 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAACTTTACTTCAATTTCAAGAG
* * * * *
33516823 G--AGGAAATGATCTTGCTCTTATTTCAATTTCAGAGAGACGAAGGCTTGTTATCCATCTTTACT
65 GATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATA--AAGACTTGATATCCAACTTTACT
33516886 TCAATTTCAAGAGGATAGGAAATGATGTTTGA
128 TCAATTTCAAGAGGATAGG-AA--A----TGA
33516918 TGCTTTATCTAACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTT
1 T-C----T-T-ACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTT
* *
33516983 CAAGAGGATAAGAAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAAC-T
59 CAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTT
*
33517047 TACTTCAATTTCAAGAGGATAGGAAAAGA
124 TACTTCAATTTCAAGAGGATAGGAAATGA
*
33517076 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGG
1 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGG
* * *
33517141 ATAGGAAATGATCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCA
66 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCA
33517206 ATTTCAAGAGGATAGGAAATGA
131 ATTTCAAGAGGATAGGAAATGA
* *
33517228 TCTTACTCTTACTTCAATTTCAGAGATAGAGACTTG-TCATCCAACTCTACTTCAATTTC-A-A-
1 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAACTTTACTTCAATTTCAAGAG
*
33517289 G--AGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTG-TCATCCAACTCTACTT
65 GATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAACTTTACTT
33517351 CAATTTC-A-A-G--AGGAAATGA
129 CAATTTCAAGAGGATAGGAAATGA
* * * * * * *
33517370 TCTTGCTCTTATTTCAATTTTAGAGAGATGAAGGCTTGTTATCCATCTTTACTTCAATTTCAAGA
1 TCTTACTCTTACTTCAA-TTT-CAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGA
*
33517435 GGATAGGAAATGATGTTTGATGCTTTATCTAACTCTTACTTCAATTTCAGAGATAAAGACTTGAT
64 GGATAGG-AA--A----TGAT-C----T-T-GCTCTTACTTCAATTTCAGAGATAAAGACTTGAT
*
33517500 ATCCAACTTTACTTCAATTTCAAGAGGATAAGAAATGA
115 ATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGA
* *
33517538 TGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAAC-TTACTTCAATTTCAAGAGG
1 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGG
*
33517602 ATAGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCA
66 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCA
*
33517667 ATTTCAAGAGGATAAGAAATGA
131 ATTTCAAGAGGATAGGAAATGA
* *
33517689 TGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAAC-TTACTTCAATTTCAAGAGG
1 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGG
*
33517753 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCA
66 ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCA
33517818 ATTTCAAGAGGATAGGAAATGA
131 ATTTCAAGAGGATAGGAAATGA
*
33517840 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGG
*
33517905 ATAAGAAATGATCTT
66 ATAGGAAATGATCTT
33517920 AGTGCTTCAT
Statistics
Matches: 1753, Mismatches: 98, Indels: 126
0.89 0.05 0.06
Matches are distributed among these distances:
142 58 0.03
143 3 0.00
144 58 0.03
145 6 0.00
146 6 0.00
147 132 0.08
149 8 0.00
150 6 0.00
151 377 0.22
152 799 0.46
153 2 0.00
154 19 0.01
156 8 0.00
157 4 0.00
158 6 0.00
161 2 0.00
162 4 0.00
163 102 0.06
164 8 0.00
165 50 0.03
166 36 0.02
167 3 0.00
168 56 0.03
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35
Consensus pattern (152 bp):
TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGG
ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCA
ATTTCAAGAGGATAGGAAATGA
Found at i:33516780 original size:33 final size:33
Alignment explanation
Indices: 33516738--33516859 Score: 124
Period size: 33 Copynumber: 3.5 Consensus size: 33
33516728 CATCCAACTC
33516738 TACTTCAATTTCAAGAGGAAATGATCTTGCTCT
1 TACTTCAATTTCAAGAGGAAATGATCTTGCTCT
*
33516771 TACTTCAATTTC-AGA-GATAAAGA-CTTGTCATCCAACT
1 TACTTCAATTTCAAGAGGA-AATGATCTTG-C-T----CT
33516808 CTACTTCAATTTCAAGAGGAAATGATCTTGCTCT
1 -TACTTCAATTTCAAGAGGAAATGATCTTGCTCT
*
33516842 TATTTCAATTTCAGAGAG
1 TACTTCAATTTCA-AGAG
33516860 ACGAAGGCTT
Statistics
Matches: 74, Mismatches: 3, Indels: 23
0.74 0.03 0.23
Matches are distributed among these distances:
31 6 0.08
32 8 0.11
33 25 0.34
34 6 0.08
37 2 0.03
38 13 0.18
39 8 0.11
40 6 0.08
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (33 bp):
TACTTCAATTTCAAGAGGAAATGATCTTGCTCT
Found at i:33516998 original size:90 final size:91
Alignment explanation
Indices: 33516838--33517004 Score: 264
Period size: 90 Copynumber: 1.8 Consensus size: 91
33516828 AATGATCTTG
* * * *
33516838 CTCTTATTTCAATTTCAGAGAGACGAAGGCTTGTTATCCATCTTTACTTCAATTTCAAGAGGATA
1 CTCTTACTTCAATTTCAGAGAGAC-AAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATA
*
33516903 GGAAATGATGTTTGATGCTTTATCTAA
65 AGAAATGATGTTTGATGCTTTATCTAA
*
33516930 CTCTTACTTCAATTTCAGAGATA-AAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAA
1 CTCTTACTTCAATTTCAGAGAGACAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAA
33516994 GAAATGATGTT
66 GAAATGATGTT
33517005 GCTCTTACTT
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
90 48 0.70
92 21 0.30
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (91 bp):
CTCTTACTTCAATTTCAGAGAGACAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAA
GAAATGATGTTTGATGCTTTATCTAA
Found at i:33517174 original size:537 final size:541
Alignment explanation
Indices: 33515761--33517905 Score: 3351
Period size: 537 Copynumber: 4.0 Consensus size: 541
33515751 TCGAGGCTTT
*
33515761 ATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCATCTTTACTTCAATTTCAAG
* * **
33515826 AGGATAGGAAATGATGTTGATGCTCTGTCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTG
66 AGGATAGGAAATGATGTTGATGCTTTATCTAACTCTTACTTCAATTTC--AGAGATAAAGACTTG
* * * *
33515891 ATATCCACCTTTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCAATTTTAGAG
129 ATATCCAACTTTACTTCAATTTCAAGAGGATAAGAAATGATCTTGCTCTTACTTCAATTTCAGAG
* * * **
33515956 ATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATTGGAAATGATCTTAATCTTACTT
194 ATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTT
* *
33516021 CAATTTCAGAAATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATAGGAAATGATCT
259 CAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCT
* * * * *
33516086 TACTCTTACTTCAATTTCAGAGATAGAGACTTGATATCTAGCTTTACTTCAATTTCAAAAGGATA
324 TACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATA
* * * *
33516151 GGAAATGATCTTTCTCTTACTTCAATTTTAGAGATAAAGACTTGATATCCAGCTTTACTTCAATT
389 GGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATT
* *
33516216 TCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTTAGAGATAAAGACTTGATATCCAGCT
454 TCAAGAGGA-AGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACT
*
33516281 TTACTTCAATTTCAAGAGGATAGGAAATG
518 CTACTTCAATTTC-A-A-G--AGGAAATG
* *
33516310 ATCTTACTCTTACTTCAATTTCAGA-A-ATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCATCTTTACTTCAATTTCAAG
*
33516373 AGGATAGG-AA--A---TGAT-C----T-T-ACTCTTACTTCAATTTCAGAGATAGAGACTTGAT
66 AGGATAGGAAATGATGTTGATGCTTTATCTAACTCTTACTTCAATTTCAGAGATAAAGACTTGAT
** * * * *
33516425 ATCCAGTTTTACTTCAATTTCAAAAGGATAGGAAATGATCTTACTCTTACTTCAATTTTAGAGAT
131 ATCCAACTTTACTTCAATTTCAAGAGGATAAGAAATGATCTTGCTCTTACTTCAATTTCAGAGAT
* *
33516490 AAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCA
196 AAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCA
*
33516555 ATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTA
261 ATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTA
*
33516620 CTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGG
326 CTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGG
* *
33516685 AAATGATCTTGCTCTTACTTTAATTTCAGAGATAGAGACTTG-TCATCCAACTCTACTTCAATTT
391 AAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAACTCTACTTCAATTT
33516749 C-A-A-G-AGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTG-TCATCCAACTC
455 CAAGAGGAAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAACTC
33516809 TACTTCAATTTCAAGAGGAAATG
519 TACTTCAATTTCAAGAGGAAATG
* ** * *
33516832 ATCTTGCTCTTATTTCAATTTCAGAGAGACGAAGGCTTGTTATCCATCTTTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCATCTTTACTTCAATTTCAAG
33516897 AGGATAGGAAATGATGTTTGATGCTTTATCTAACTCTTACTTCAATTTCAGAGATAAAGACTTGA
66 AGGATAGGAAATGATG-TTGATGCTTTATCTAACTCTTACTTCAATTTCAGAGATAAAGACTTGA
*
33516962 TATCCAACTTTACTTCAATTTCAAGAGGATAAGAAATGATGTTGCTCTTACTTCAATTTCAGAGA
130 TATCCAACTTTACTTCAATTTCAAGAGGATAAGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
33517027 TAAAGACTTGATATCCAAC-TTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTC
195 TAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTC
33517091 AATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTT
260 AATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTT
*
33517156 ACTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAG
325 ACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAG
* *
33517221 GAAATGATCTTACTCTTACTTCAATTTCAGAGATAGAGACTTG-TCATCCAACTCTACTTCAATT
390 GAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAACTCTACTTCAATT
33517285 TC-A-A-G-AGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTG-TCATCCAACT
454 TCAAGAGGAAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAACT
33517345 CTACTTCAATTTCAAGAGGAAATG
518 CTACTTCAATTTCAAGAGGAAATG
* * * * *
33517369 ATCTTGCTCTTATTTCAATTTTAGAGAGATGAAGGCTTGTTATCCATCTTTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCATCTTTACTTCAATTTCAAG
33517434 AGGATAGGAAATGATGTTTGATGCTTTATCTAACTCTTACTTCAATTTCAGAGATAAAGACTTGA
66 AGGATAGGAAATGATG-TTGATGCTTTATCTAACTCTTACTTCAATTTCAGAGATAAAGACTTGA
*
33517499 TATCCAACTTTACTTCAATTTCAAGAGGATAAGAAATGATGTTGCTCTTACTTCAATTTCAGAGA
130 TATCCAACTTTACTTCAATTTCAAGAGGATAAGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
33517564 TAAAGACTTGATATCCAAC-TTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTC
195 TAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTC
* *
33517628 AATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAAGAAATGATGTT
260 AATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTT
*
33517693 GCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACT-TACTTCAATTTCAAGAGGATAG
325 ACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAG
* *
33517757 GAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTT
390 GAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTT
* * *
33517822 CAAGAGGATAGGAAATGATCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTT
455 CAAGAGGA-AGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTC
33517887 TACTTCAATTTCAAGAGGA
519 TACTTCAATTTCAAGAGGA
33517906 TAAGAAATGA
Statistics
Matches: 1510, Mismatches: 61, Indels: 58
0.93 0.04 0.04
Matches are distributed among these distances:
522 31 0.02
523 1 0.00
524 41 0.03
525 3 0.00
526 2 0.00
527 64 0.04
529 1 0.00
530 1 0.00
531 6 0.00
532 319 0.21
534 16 0.01
535 1 0.00
536 84 0.06
537 682 0.45
538 109 0.07
539 1 0.00
540 1 0.00
541 74 0.05
542 1 0.00
544 1 0.00
546 2 0.00
547 44 0.03
548 1 0.00
549 24 0.02
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (541 bp):
ATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCATCTTTACTTCAATTTCAAG
AGGATAGGAAATGATGTTGATGCTTTATCTAACTCTTACTTCAATTTCAGAGATAAAGACTTGAT
ATCCAACTTTACTTCAATTTCAAGAGGATAAGAAATGATCTTGCTCTTACTTCAATTTCAGAGAT
AAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTACTTCA
ATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTA
CTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTCAAGAGGATAGG
AAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTC
AAGAGGAAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTA
CTTCAATTTCAAGAGGAAATG
Found at i:33517317 original size:33 final size:33
Alignment explanation
Indices: 33517275--33517389 Score: 119
Period size: 33 Copynumber: 3.3 Consensus size: 33
33517265 CATCCAACTC
33517275 TACTTCAATTTCAAGAGGAAATGATCTTGCTCT
1 TACTTCAATTTCAAGAGGAAATGATCTTGCTCT
*
33517308 TACTTCAATTTC-AGA-GATAAAGA-CTTGTCATCCAACT
1 TACTTCAATTTCAAGAGGA-AATGATCTTG-C-T----CT
33517345 CTACTTCAATTTCAAGAGGAAATGATCTTGCTCT
1 -TACTTCAATTTCAAGAGGAAATGATCTTGCTCT
*
33517379 TATTTCAATTT
1 TACTTCAATTT
33517390 TAGAGAGATG
Statistics
Matches: 68, Mismatches: 3, Indels: 22
0.73 0.03 0.24
Matches are distributed among these distances:
31 6 0.09
32 8 0.12
33 23 0.34
34 2 0.03
37 2 0.03
38 13 0.19
39 8 0.12
40 6 0.09
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.37
Consensus pattern (33 bp):
TACTTCAATTTCAAGAGGAAATGATCTTGCTCT
Found at i:33517535 original size:90 final size:92
Alignment explanation
Indices: 33517375--33517541 Score: 257
Period size: 90 Copynumber: 1.8 Consensus size: 92
33517365 AATGATCTTG
* * * * * *
33517375 CTCTTATTTCAATTTTAGAGAGATGAAGGCTTGTTATCCATCTTTACTTCAATTTCAAGAGGATA
1 CTCTTACTTCAATTTTACAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATA
*
33517440 GGAAATGATGTTTGATGCTTTATCTAA
66 AGAAATGATGTTTGATGCTTTATCTAA
33517467 CTCTTACTTCAA-TTT-CAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATA
1 CTCTTACTTCAATTTTACAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATA
33517530 AGAAATGATGTT
66 AGAAATGATGTT
33517542 GCTCTTACTT
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
90 54 0.79
91 3 0.04
92 11 0.16
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (92 bp):
CTCTTACTTCAATTTTACAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATA
AGAAATGATGTTTGATGCTTTATCTAA
Found at i:33517920 original size:76 final size:76
Alignment explanation
Indices: 33515853--33517919 Score: 1841
Period size: 76 Copynumber: 27.1 Consensus size: 76
33515843 TGATGCTCTG
*
33515853 TCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGATATCCACCTTTACTTCAATTTCAAGA
1 TCTTGCTCTTACTTCAATTTC--AGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGA
*
33515918 GGATAGGAAAAGA
64 GGATAGGAAATGA
*
33515931 TCTTGCTCTTACTTCAATTTTAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
*
33515996 ATTGGAAATGA
66 ATAGGAAATGA
** *
33516007 TCTTAATCTTACTTCAATTTCAGAAATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33516072 ATAGGAAATGA
66 ATAGGAAATGA
* * * *
33516083 TCTTACTCTTACTTCAATTTCAGAGATAGAGACTTGATATCTAGCTTTACTTCAATTTCAAAAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33516148 ATAGGAAATGA
66 ATAGGAAATGA
* *
33516159 TCTTTCTCTTACTTCAATTTTAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33516224 ATAGGAAATGA
66 ATAGGAAATGA
*
33516235 TCTTGCTCTTACTTCAATTTTAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33516300 ATAGGAAATGA
66 ATAGGAAATGA
* *
33516311 TCTTACTCTTACTTCAATTTCAGAAATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33516376 ATAGGAAATGA
66 ATAGGAAATGA
* * * *
33516387 TCTTACTCTTACTTCAATTTCAGAGATAGAGACTTGATATCCAGTTTTACTTCAATTTCAAAAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33516452 ATAGGAAATGA
66 ATAGGAAATGA
* *
33516463 TCTTACTCTTACTTCAATTTTAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33516528 ATAGGAAATGA
66 ATAGGAAATGA
33516539 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33516604 ATAGGAAATGA
66 ATAGGAAATGA
* * * *
33516615 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33516680 ATAGGAAATGA
66 ATAGGAAATGA
* * * *
33516691 TCTTGCTCTTACTTTAATTTCAGAGATAGAGACTTG-TCATCCAACTCTACTTCAATTTC-A-A-
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAGCTTTACTTCAATTTCAAGAG
33516752 G--AGGAAATGA
65 GATAGGAAATGA
* *
33516762 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTG-TCATCCAACTCTACTTCAATTTC-A-A-
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAGCTTTACTTCAATTTCAAGAG
33516823 G--AGGAAATGA
65 GATAGGAAATGA
* * * * *
33516833 TCTTGCTCTTATTTCAATTTCAGAGAGACGAAGGCTTGTTATCCATCTTTACTTCAATTTCAAGA
1 TCTTGCTCTTACTTCAATTTCAGAGATA--AAGACTTGATATCCAGCTTTACTTCAATTTCAAGA
33516898 GGATAGGAAATGA
64 GGATAGGAAATGA
* * * * ** * ** * ** * *
33516911 TGTTTGATGCTTTATCTAACTCTTACTTCA-ATTTCAGAGA-TAAAGA-CTTGATATCCAACTT-
1 T-CTTGCT-C-TTA-CT---TC-AATTTCAGAGAT-AAAGACTTGATATCCAGCT-T--TACTTC
* * **** *
33516972 TACTTCAATTTCAAGAGGATAA-GA
54 AATTTCAA-GAGGATAGGA-AATGA
** * * * * * * ** * *
33516996 -AATGATGTTGC-TCTTACTTCA-A-TTTCAGA---GATA--AAGACTTGATA-TCCAACTTACT
1 TCTTGCTCTTACTTC-AATTTCAGAGATAAAGACTTGATATCCAG-CTT--TACTTCAA--T--T
**** * **
33517051 TCAATTTCAAGAGGATAGGAAAA
58 TCAA-GAGGATAGGA-A--ATGA
** * *
33517074 GATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGA
1 TCT-TG-CTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGA
33517139 GGATAGGAAATGA
64 GGATAGGAAATGA
* * * *
33517152 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33517217 ATAGGAAATGA
66 ATAGGAAATGA
* * * *
33517228 TCTTACTCTTACTTCAATTTCAGAGATAGAGACTTG-TCATCCAACTCTACTTCAATTTC-A-A-
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAGCTTTACTTCAATTTCAAGAG
33517289 G--AGGAAATGA
65 GATAGGAAATGA
* *
33517299 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTG-TCATCCAACTCTACTTCAATTTC-A-A-
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGAT-ATCCAGCTTTACTTCAATTTCAAGAG
33517360 G--AGGAAATGA
65 GATAGGAAATGA
* * * * * *
33517370 TCTTGCTCTTATTTCAATTTTAGAGAGATGAAGGCTTGTTATCCATCTTTACTTCAATTTCAAGA
1 TCTTGCTCTTACTTCAA-TTT-CAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGA
33517435 GGATAGGAAATGA
64 GGATAGGAAATGA
* * * * ** * ** * ** * *
33517448 TGTTTGATGCTTTATCTAACTCTTACTTCA-ATTTCAGAGA-TAAAGA-CTTGATATCCAACTT-
1 T-CTTGCT-C-TTA-CT---TC-AATTTCAGAGAT-AAAGACTTGATATCCAGCT-T--TACTTC
* * **** *
33517509 TACTTCAATTTCAAGAGGATAA-GA
54 AATTTCAA-GAGGATAGGA-AATGA
** * * * * * * ** * *
33517533 -AATGATGTTGC-TCTTACTTCA-A-TTTCAGA---GATA--AAGACTTGATA-TCCAACTTACT
1 TCTTGCTCTTACTTC-AATTTCAGAGATAAAGACTTGATATCCAG-CTT--TACTTCAA--T--T
**** * **
33517588 TCAATTTCAAGAGGATAGGAAAA
58 TCAA-GAGGATAGGA-A--ATGA
** * *
33517611 GATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGA
1 TCT-TG-CTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGA
*
33517676 GGATAAGAAATGA
64 GGATAGGAAATGA
* *
33517689 TGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAAC-TTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33517753 ATAGGAAATGA
66 ATAGGAAATGA
33517764 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
33517829 ATAGGAAATGA
66 ATAGGAAATGA
*
33517840 TCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
1 TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
*
33517905 ATAAGAAATGA
66 ATAGGAAATGA
33517916 TCTT
1 TCTT
33517920 AGTGCTTCAT
Statistics
Matches: 1701, Mismatches: 199, Indels: 180
0.82 0.10 0.09
Matches are distributed among these distances:
70 2 0.00
71 206 0.12
72 9 0.01
73 60 0.04
74 12 0.01
75 118 0.07
76 1054 0.62
77 4 0.00
78 48 0.03
79 10 0.01
80 8 0.00
81 37 0.02
82 22 0.01
83 24 0.01
84 19 0.01
85 33 0.02
86 27 0.02
87 6 0.00
88 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35
Consensus pattern (76 bp):
TCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGG
ATAGGAAATGA
Found at i:33517992 original size:91 final size:88
Alignment explanation
Indices: 33517839--33518003 Score: 276
Period size: 91 Copynumber: 1.8 Consensus size: 88
33517829 ATAGGAAATG
* *
33517839 ATCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTACTCTTACTTCAATTTCAGAGACAAAGACTTGATATCCAGCTCTACTTCAATTTCAAGAG
33517904 GATAAGAAATGATCTTAGTGCTTC
66 GATAA-AAATGATCTTAGTGCTTC
*
33517928 ATCTTACTCTTACTTCAATTTCAGATAGACAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAG
1 ATCTTACTCTTACTTCAATTTCAG--AGACAAAGACTTGATATCCAGCTCTACTTCAATTTCAAG
33517993 AGGATAAAAAT
64 AGGATAAAAAT
33518004 TTGACATTTG
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
89 24 0.34
90 4 0.06
91 43 0.61
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.35
Consensus pattern (88 bp):
ATCTTACTCTTACTTCAATTTCAGAGACAAAGACTTGATATCCAGCTCTACTTCAATTTCAAGAG
GATAAAAATGATCTTAGTGCTTC
Found at i:33519716 original size:8 final size:8
Alignment explanation
Indices: 33519699--33519759 Score: 52
Period size: 8 Copynumber: 7.6 Consensus size: 8
33519689 ACCTCTCCTT
*
33519699 TTTTTTTC
1 TTTTTCTC
33519707 TTTTTCTC
1 TTTTTCTC
33519715 TTTTTCTC
1 TTTTTCTC
* *
33519723 TTTTTTTG
1 TTTTTCTC
* *
33519731 TTTTTTTA
1 TTTTTCTC
*
33519739 TTTTT-TA
1 TTTTTCTC
33519746 TTTTTCTCC
1 TTTTTCT-C
33519755 TTTTT
1 TTTTT
33519760 TATTTGTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
7 7 0.15
8 34 0.74
9 5 0.11
ACGTcount: A:0.03, C:0.13, G:0.02, T:0.82
Consensus pattern (8 bp):
TTTTTCTC
Found at i:33519724 original size:16 final size:15
Alignment explanation
Indices: 33519699--33519764 Score: 60
Period size: 16 Copynumber: 4.2 Consensus size: 15
33519689 ACCTCTCCTT
* *
33519699 TTTTTTTCTTTTTCTC
1 TTTTTCTCTTTTT-TA
*
33519715 TTTTTCTCTTTTTTTG
1 TTTTTCTC-TTTTTTA
* *
33519731 TTTTTTTATTTTTTA
1 TTTTTCTCTTTTTTA
33519746 TTTTTCTCCTTTTTTA
1 TTTTTCT-CTTTTTTA
33519762 TTT
1 TTT
33519765 GTTTTTCTTC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
15 12 0.29
16 24 0.59
17 5 0.12
ACGTcount: A:0.05, C:0.12, G:0.02, T:0.82
Consensus pattern (15 bp):
TTTTTCTCTTTTTTA
Found at i:33519750 original size:31 final size:32
Alignment explanation
Indices: 33519699--33519769 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
33519689 ACCTCTCCTT
* * * *
33519699 TTTTTTTCTTTTTCTCTTTTTCTCTTTTTTTG
1 TTTTTTTATTTTTCTATTTTTCTCCTTTTTTA
33519731 TTTTTTTATTTTT-TATTTTTCTCCTTTTTTA
1 TTTTTTTATTTTTCTATTTTTCTCCTTTTTTA
33519762 TTTGTTTT
1 TTT-TTTT
33519770 TCTTCATTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 18 0.53
32 16 0.47
ACGTcount: A:0.04, C:0.11, G:0.03, T:0.82
Consensus pattern (32 bp):
TTTTTTTATTTTTCTATTTTTCTCCTTTTTTA
Found at i:33525103 original size:60 final size:60
Alignment explanation
Indices: 33525024--33525277 Score: 273
Period size: 60 Copynumber: 4.2 Consensus size: 60
33525014 TTGAGGGTAA
* ** * * *
33525024 AAAAGGTAATTTTTG-AAAGTTTCAGGGTCAAAGTACAATTTTGGAAAAGTTTTGGAGTT
1 AAAATGTAATTTTTGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGAGTC
* * *
33525083 AAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTCTTAG-AAAGTTTTGGGGGT-
1 AAAATGTAATTTTTGAAAAGTTTTGGGGTCAAAATATAATT-TTGGAAAAGTTTT-GGAGTC
* ** * * * *
33525143 GAAATGTAATTTCAGAAAAGCTTTGGGGTTAAAATATAATTTTGGAAAAGTTTAGGGGTC
1 AAAATGTAATTTTTGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGAGTC
* * *
33525203 AAAATGTAATTTTTAAAAAGTTTTGGGGTCAAAATATAATTTT-TAGAAAGTTTTAGAGTC
1 AAAATGTAATTTTTGAAAAGTTTTGGGGTCAAAATATAATTTTGGA-AAAGTTTTGGAGTC
*
33525263 GAAATGTAATTTTTG
1 AAAATGTAATTTTTG
33525278 GACAATTTAG
Statistics
Matches: 162, Mismatches: 27, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
59 22 0.14
60 133 0.82
61 7 0.04
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (60 bp):
AAAATGTAATTTTTGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGAGTC
Found at i:33525132 original size:90 final size:87
Alignment explanation
Indices: 33525030--33525289 Score: 254
Period size: 90 Copynumber: 2.9 Consensus size: 87
33525020 GTAAAAAAGG
* *
33525030 TAATTTTTGAAAGTTTCAGGGTCAAAGTACAATTTTGGAAAAGTTTTGGAGTTAAAATGTAATTT
1 TAATTTTAGAAAGTTTCGGGGTCAAAGTA-AATTTT-GAAAAGTTTTGGAGTTAAAATGTAATTT
*
33525095 TGGAAAAGTTTTGGGGTCAAAATA
64 TGGAAAAGTTTAGGGGTCAAAATA
* * * * * *
33525119 TAATTCTTAGAAAGTTTTGGGGGTGAAATGT-AATTTCAGAAAAGCTTTGGGGTTAAAATATAAT
1 TAATT-TTAGAAAG-TTTCGGGGTCAAA-GTAAATTT-TGAAAAGTTTTGGAGTTAAAATGTAAT
*
33525183 TTTGGAAAAGTTTAGGGGTCAAAATG
62 TTTGGAAAAGTTTAGGGGTCAAAATA
* * * * * **
33525209 TAATTTTTAAAAAGTTTTGGGGTCAAAATATAATTTTTAGAAAGTTTTAGAGTCGAAATGTAATT
1 TAA-TTTTAGAAAGTTTCGGGGTCAAAGTA-AATTTTGA-AAAGTTTTGGAGTTAAAATGTAA-T
*
33525274 TTTGGACAA-TTTAGGG
62 TTTGGAAAAGTTTAGGG
33525290 ACTTACAAAG
Statistics
Matches: 139, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
88 1 0.01
89 17 0.12
90 98 0.71
91 21 0.15
92 2 0.01
ACGTcount: A:0.36, C:0.04, G:0.23, T:0.37
Consensus pattern (87 bp):
TAATTTTAGAAAGTTTCGGGGTCAAAGTAAATTTTGAAAAGTTTTGGAGTTAAAATGTAATTTTG
GAAAAGTTTAGGGGTCAAAATA
Found at i:33525246 original size:30 final size:30
Alignment explanation
Indices: 33525030--33525276 Score: 203
Period size: 30 Copynumber: 8.3 Consensus size: 30
33525020 GTAAAAAAGG
* ** *
33525030 TAATTTTT-GAAAGTTTCAGGGTCAAAGTA
1 TAATTTTTAAAAAGTTTTGGGGTCAAAATA
* ** * * *
33525059 CAATTTTGGAAAAGTTTTGGAGTTAAAATG
1 TAATTTTTAAAAAGTTTTGGGGTCAAAATA
**
33525089 TAATTTTGGAAAAGTTTTGGGGTCAAAATA
1 TAATTTTTAAAAAGTTTTGGGGTCAAAATA
* * * *
33525119 TAATTCTTAGAAAGTTTTGGGGGT-GAAATG
1 TAATTTTTAAAAAGTTTT-GGGGTCAAAATA
* * *
33525149 TAA-TTTCAGAAAAGCTTTGGGGTTAAAATA
1 TAATTTTTA-AAAAGTTTTGGGGTCAAAATA
** * *
33525179 TAATTTTGGAAAAGTTTAGGGGTCAAAATG
1 TAATTTTTAAAAAGTTTTGGGGTCAAAATA
33525209 TAATTTTTAAAAAGTTTTGGGGTCAAAATA
1 TAATTTTTAAAAAGTTTTGGGGTCAAAATA
* * * * *
33525239 TAATTTTTAGAAAGTTTTAGAGTCGAAATG
1 TAATTTTTAAAAAGTTTTGGGGTCAAAATA
33525269 TAATTTTT
1 TAATTTTT
33525277 GGACAATTTA
Statistics
Matches: 173, Mismatches: 40, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
29 14 0.08
30 151 0.87
31 8 0.05
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (30 bp):
TAATTTTTAAAAAGTTTTGGGGTCAAAATA
Found at i:33527129 original size:29 final size:28
Alignment explanation
Indices: 33527074--33527130 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
33527064 TTAAGTTAGG
*
33527074 CCAATTGGGCCTTTGTAATTGTATTTGGC
1 CCAATTGGG-CTTTGTAATTGGATTTGGC
33527103 CCAATTGGG-TTTGTACATTGGACTTTGG
1 CCAATTGGGCTTTGTA-ATTGGA-TTTGG
33527131 GCTTTTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 6 0.24
28 5 0.20
29 14 0.56
ACGTcount: A:0.18, C:0.16, G:0.26, T:0.40
Consensus pattern (28 bp):
CCAATTGGGCTTTGTAATTGGATTTGGC
Found at i:33527186 original size:16 final size:17
Alignment explanation
Indices: 33527165--33527198 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
33527155 ATGTTAAATT
33527165 TAAATTGAA-TTCAAAA
1 TAAATTGAATTTCAAAA
*
33527181 TAAATTTAATTTCAAAA
1 TAAATTGAATTTCAAAA
33527198 T
1 T
33527199 GGTTTGGGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (17 bp):
TAAATTGAATTTCAAAA
Found at i:33547843 original size:18 final size:18
Alignment explanation
Indices: 33547801--33547849 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 18
33547791 TTATCAAAAG
*
33547801 ATATTTTA-ATTATTAATA
1 ATATTTTATAATA-TAATA
33547819 ATA--TTATAATATAATA
1 ATATTTTATAATATAATA
33547835 ATATTTTATAA-ATAA
1 ATATTTTATAATATAA
33547850 AAAAAAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
16 11 0.41
17 7 0.26
18 9 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATTTTATAATATAATA
Found at i:33554307 original size:23 final size:23
Alignment explanation
Indices: 33554281--33554326 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
33554271 ATTAAGTCCA
33554281 AGGTTCATTGGTTCATACGAGGT
1 AGGTTCATTGGTTCATACGAGGT
33554304 AGGTTCATTGGTTCATACGAGGT
1 AGGTTCATTGGTTCATACGAGGT
33554327 TATAGAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.30, T:0.35
Consensus pattern (23 bp):
AGGTTCATTGGTTCATACGAGGT
Found at i:33555058 original size:18 final size:18
Alignment explanation
Indices: 33555016--33555064 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 18
33555006 TTATCAAAAG
*
33555016 ATATTTTA-ATTATTAATA
1 ATATTTTATAATA-TAATA
33555034 ATA--TTATAATATAATA
1 ATATTTTATAATATAATA
33555050 ATATTTTATAA-ATAA
1 ATATTTTATAATATAA
33555065 AAAAAAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
16 11 0.41
17 7 0.26
18 9 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATTTTATAATATAATA
Found at i:33558144 original size:25 final size:24
Alignment explanation
Indices: 33558095--33558145 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
33558085 GTTATACATT
*
33558095 ATTTTTCTAATATTATATATTATA
1 ATTTTTCTAATATCATATATTATA
*
33558119 ATTTTTACTAAT-TCATATTTTAATA
1 ATTTTT-CTAATATCATATATT-ATA
33558144 AT
1 AT
33558146 AATTATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTTTTCTAATATCATATATTATA
Found at i:33558207 original size:58 final size:58
Alignment explanation
Indices: 33558119--33558264 Score: 172
Period size: 58 Copynumber: 2.5 Consensus size: 58
33558109 ATATATTATA
* * *
33558119 ATTTTTACT-AATTCATATTTTAATAATAATTATATTAAAAATATTATTAAATT--TTATT
1 ATTTTTATTAAATT-ATA-TTTAATAATAATTATATT-AAAATATAATTAAATTAATTAAT
* * *
33558177 TTATTTTATTAAATTGTATTTAATAATAATTATGTTAAAATATAATTAAATTAATTAAT
1 AT-TTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATTAATTAAT
*
33558236 ATTTTTATTGAATTATATTTAATAATAAT
1 ATTTTTATTAAATTATATTTAATAATAAT
33558265 CATTAAAATT
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
57 15 0.20
58 43 0.57
59 13 0.17
60 4 0.05
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (58 bp):
ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATTAATTAAT
Found at i:33574202 original size:30 final size:30
Alignment explanation
Indices: 33574165--33574322 Score: 237
Period size: 30 Copynumber: 5.3 Consensus size: 30
33574155 GACGCAAATA
33574165 GGGAGACCTGCTCCTGCTTCTTCGATTTCT
1 GGGAGACCTGCTCCTGCTTCTTCGATTTCT
* *
33574195 CGGAGACCTGCTCCTGCTTCTTCGGTTTCT
1 GGGAGACCTGCTCCTGCTTCTTCGATTTCT
33574225 GGGAGACCTGCTCCTGCTTCTAT-GATTTCT
1 GGGAGACCTGCTCCTGCTTCT-TCGATTTCT
* *
33574255 AGGAGACCTGCTCCTGCTTCTACGATTTCT
1 GGGAGACCTGCTCCTGCTTCTTCGATTTCT
* * *
33574285 GGGAGACCTGCTTCTGCTTCTCCGGTTTCT
1 GGGAGACCTGCTCCTGCTTCTTCGATTTCT
33574315 GGGAGACC
1 GGGAGACC
33574323 AACTAAAACA
Statistics
Matches: 116, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 115 0.99
31 1 0.01
ACGTcount: A:0.11, C:0.30, G:0.25, T:0.34
Consensus pattern (30 bp):
GGGAGACCTGCTCCTGCTTCTTCGATTTCT
Found at i:33588003 original size:4 final size:4
Alignment explanation
Indices: 33587988--33588021 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
33587978 ATTAAAATAA
*
33587988 TATG TGTG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TA
33588022 ATGAACTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:33588194 original size:229 final size:229
Alignment explanation
Indices: 33587793--33588491 Score: 1245
Period size: 229 Copynumber: 3.0 Consensus size: 229
33587783 AGAATGTTCG
33587793 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
1 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
*
33587858 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATATGTTTGGTTC
66 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATGTGTTTGGTTC
*
33587923 GTTTATGTTCACAAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
131 GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
33587988 TATGTGTGTATGTATGTATGTATGTATGTATGTA
196 TATGTGTGTATGTATGTATGTATGTATGTATGTA
33588022 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
1 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
33588087 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATGTGTTTGGTTC
66 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATGTGTTTGGTTC
33588152 GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
131 GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAAT-A
33588217 TATGTGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTA
195 -A------TATG--TG--TGTATGTATGTATGTATGTATGTATGTA
*
33588263 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCAAAATAAATGA
1 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
*
33588328 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAAATGTGTTTGGTTC
66 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATGTGTTTGGTTC
33588393 GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
131 GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
*
33588458 TATGTATGTATGTATGTATGTATGTATGTATGTA
196 TATGTGTGTATGTATGTATGTATGTATGTATGTA
33588492 TGTATGTATG
Statistics
Matches: 453, Mismatches: 5, Indels: 24
0.94 0.01 0.05
Matches are distributed among these distances:
229 219 0.48
230 1 0.00
231 2 0.00
233 4 0.01
237 4 0.01
239 3 0.01
240 1 0.00
241 219 0.48
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (229 bp):
ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATGTGTTTGGTTC
GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
TATGTGTGTATGTATGTATGTATGTATGTATGTA
Found at i:33588232 original size:4 final size:4
Alignment explanation
Indices: 33588217--33588262 Score: 83
Period size: 4 Copynumber: 11.5 Consensus size: 4
33588207 ATTAAAATAA
*
33588217 TATG TGTG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
33588263 ATGAACTGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:33588265 original size:241 final size:240
Alignment explanation
Indices: 33587793--33588503 Score: 1291
Period size: 241 Copynumber: 3.0 Consensus size: 240
33587783 AGAATGTTCG
33587793 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
1 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
*
33587858 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATATGTTTGGTTC
66 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATGTGTTTGGTTC
*
33587923 GTTTATGTTCACAAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAAT-A
131 GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
33587987 -A-----TATG--TG--TGTATGTATGTATGTATGTATGTATGTA
196 TATGTTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTA
33588022 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
1 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
33588087 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATGTGTTTGGTTC
66 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATGTGTTTGGTTC
33588152 GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
131 GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
33588217 TATGTGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTA
196 TATGT-TGTATGTATGTATGTATGTATGTATGTATGTATGTATGTA
*
33588263 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCAAAATAAATGA
1 ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
*
33588328 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAAATGTGTTTGGTTC
66 GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATGTGTTTGGTTC
33588393 GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
131 GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
33588458 TATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTA
196 TATGT-TGTATGTATGTATGTATGTATGTATGTATGTATGTATGTA
33588504 TTGCTTGTTT
Statistics
Matches: 465, Mismatches: 5, Indels: 12
0.96 0.01 0.02
Matches are distributed among these distances:
229 191 0.41
230 1 0.00
231 1 0.00
237 4 0.01
239 2 0.00
241 266 0.57
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (240 bp):
ATGAACTGTTTGTGAACCGTTTGTATAATGTTCGTTTATGTTTGTTTACTAAGCTAAATAAATGA
GTATGAACAAAATTTTTATGTTCGTTTAATAAACGAATGAATATGAACAGAGATGTGTTTGGTTC
GTTTATGTTCACGAACAAGTTCGTTTATTTATCAATGATATTTTCTTATAAAAATATTAAAATAA
TATGTTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTA
Found at i:33588467 original size:4 final size:4
Alignment explanation
Indices: 33588458--33588504 Score: 94
Period size: 4 Copynumber: 11.8 Consensus size: 4
33588448 ATTAAAATAA
33588458 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
33588505 TGCTTGTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:33588876 original size:4 final size:4
Alignment explanation
Indices: 33588867--33588915 Score: 57
Period size: 4 Copynumber: 12.2 Consensus size: 4
33588857 ATGAGAGATT
*
33588867 TTTC TTTC TTT- TTTC TTT- TTCC TTTTC TTTC TTTC TTTC GTTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC -TTTC TTTC TTTC TTTC -TTTC TTTC
33588915 T
1 T
33588916 CTTTTATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
3 5 0.13
4 27 0.69
5 7 0.18
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:33588910 original size:23 final size:22
Alignment explanation
Indices: 33588866--33588919 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
33588856 CATGAGAGAT
*
33588866 TTTTCTTTCTTTTTTCTTTTTCC
1 TTTTCTTTCTTTTTTCTGTTT-C
33588889 TTTTCTTTCTTTCTTTC-GTTTC
1 TTTTCTTTCTTT-TTTCTGTTTC
33588911 TTTCTCTTT
1 TTT-TCTTT
33588920 TATTTTTGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 4 0.14
23 20 0.71
24 4 0.14
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTTCTTTCTTTTTTCTGTTTC
Found at i:33590421 original size:15 final size:15
Alignment explanation
Indices: 33590390--33590418 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33590380 TTATTTAATA
33590390 AAAATAAATATTTTT
1 AAAATAAATATTTTT
33590405 AAAA-AAATATTTTT
1 AAAATAAATATTTTT
33590419 TAATTTCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAAATAAATATTTTT
Found at i:33610103 original size:28 final size:29
Alignment explanation
Indices: 33610043--33610108 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
33610033 ACGAACTATT
* * *
33610043 TGGCGGATAGTCCAAAGCACAAGCCAAAG
1 TGGCGGACAATCCAAAGCACAAGCCAAAA
*
33610072 TGGCGGACAATCC-AAGTACAAGCCAAAA
1 TGGCGGACAATCCAAAGCACAAGCCAAAA
*
33610100 TGGCAGACA
1 TGGCGGACA
33610109 GTCTAGTCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 21 0.66
29 11 0.34
ACGTcount: A:0.39, C:0.24, G:0.26, T:0.11
Consensus pattern (29 bp):
TGGCGGACAATCCAAAGCACAAGCCAAAA
Found at i:33613890 original size:5 final size:5
Alignment explanation
Indices: 33613880--33613918 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
33613870 GAGCTGCATT
33613880 ATCCC ATCCC ATCCC ATCCC ATCCC ATCCC ATCCC ATCC
1 ATCCC ATCCC ATCCC ATCCC ATCCC ATCCC ATCCC ATCC
33613919 AGACAAGAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (5 bp):
ATCCC
Found at i:33615758 original size:20 final size:19
Alignment explanation
Indices: 33615709--33615760 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
33615699 AAAATTACGA
*
33615709 AAAAAATCAAAATAGTTTT
1 AAAAATTCAAAATAGTTTT
*
33615728 TAAAATTCAAAATA-TTTAT
1 AAAAATTCAAAATAGTTT-T
33615747 AAAAATTTCAAAAT
1 AAAAA-TTCAAAAT
33615761 TTATATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 3 0.11
19 17 0.61
20 8 0.29
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAATTCAAAATAGTTTT
Found at i:33620002 original size:31 final size:31
Alignment explanation
Indices: 33619967--33620036 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
33619957 ACTGAACAAC
* *
33619967 TCAATGATTTAAATAAAAACTTAT-GAATAGT
1 TCAATGACTTAAATAAAAACTT-TCAAATAGT
*
33619998 TCAATAACTTAAATAAAAACTTTCAAATAGT
1 TCAATGACTTAAATAAAAACTTTCAAATAGT
33620029 TCAATGAC
1 TCAATGAC
33620037 CAAATTGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 1 0.03
31 33 0.97
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (31 bp):
TCAATGACTTAAATAAAAACTTTCAAATAGT
Found at i:33626087 original size:25 final size:25
Alignment explanation
Indices: 33626033--33626087 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
33626023 GTTGGAAATG
33626033 ATTTTT-TTTTCCAAAATAATATAA
1 ATTTTTATTTTCCAAAATAATATAA
* * *
33626057 A--ATTATTTTTCGAAATAATATAA
1 ATTTTTATTTTCCAAAATAATATAA
33626080 ATTTTTAT
1 ATTTTTAT
33626088 CAAAATAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
22 2 0.08
23 17 0.71
24 1 0.04
25 4 0.17
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (25 bp):
ATTTTTATTTTCCAAAATAATATAA
Found at i:33626095 original size:21 final size:23
Alignment explanation
Indices: 33626044--33626095 Score: 72
Period size: 21 Copynumber: 2.3 Consensus size: 23
33626034 TTTTTTTTTC
*
33626044 CAAAATAATATAAAATTATTTTT
1 CAAAATAATATAAAATTATTTAT
*
33626067 CGAAATAATAT-AAATT-TTTAT
1 CAAAATAATATAAAATTATTTAT
33626088 CAAAATAA
1 CAAAATAA
33626096 ATCAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 11 0.42
22 5 0.19
23 10 0.38
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (23 bp):
CAAAATAATATAAAATTATTTAT
Found at i:33626346 original size:31 final size:31
Alignment explanation
Indices: 33626290--33626352 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
33626280 TTATTTTAAT
*
33626290 AATTAATATTTTTATAATTTTAAAAAAATTA
1 AATTAATATTATTATAATTTTAAAAAAATTA
*
33626321 AATTAA-ATTATTATTATTTTAAAAAAATTA
1 AATTAATATTATTATAATTTTAAAAAAATTA
33626351 AA
1 AA
33626353 ATATAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (31 bp):
AATTAATATTATTATAATTTTAAAAAAATTA
Found at i:33627602 original size:28 final size:27
Alignment explanation
Indices: 33627571--33627649 Score: 70
Period size: 29 Copynumber: 2.8 Consensus size: 27
33627561 TTTTTTATTA
**
33627571 ATTTTTATTTTT-TAACATTTTGAATTTT
1 ATTTTTATTTTTATAA-ATTTT-AATAAT
*
33627599 ATTTAATATTTTTATAAATTTTAATAAT
1 ATTT-TTATTTTTATAAATTTTAATAAT
*
33627627 ATTTTTACATATTTATAAATTTT
1 ATTTTT--ATTTTTATAAATTTT
33627650 TAAAAAATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
27 1 0.02
28 12 0.29
29 26 0.62
30 3 0.07
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (27 bp):
ATTTTTATTTTTATAAATTTTAATAAT
Found at i:33627628 original size:21 final size:22
Alignment explanation
Indices: 33627593--33627633 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
33627583 TAACATTTTG
*
33627593 AATTTTATTTAATATTTTTATA
1 AATTTTATATAATATTTTTATA
33627615 AATTTTA-ATAATATTTTTA
1 AATTTTATATAATATTTTTA
33627634 CATATTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
AATTTTATATAATATTTTTATA
Found at i:33627640 original size:21 final size:19
Alignment explanation
Indices: 33627602--33627651 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 19
33627592 GAATTTTATT
*
33627602 TAATATTTTTATAAATTTTAA
1 TAATATTTTTACAAA-TTT-A
*
33627623 TAATATTTTTACATATTTA
1 TAATATTTTTACAAATTTA
33627642 TAA-ATTTTTA
1 TAATATTTTTA
33627652 AAAAATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 7 0.26
19 4 0.15
20 3 0.11
21 13 0.48
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
TAATATTTTTACAAATTTA
Found at i:33627670 original size:23 final size:24
Alignment explanation
Indices: 33627635--33627680 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
33627625 ATATTTTTAC
33627635 ATATTTATAAATTTTTAAAAAATAT
1 ATATTTATAAA-TTTTAAAAAATAT
33627660 ATATTT-T-AATTTTAAAAAATA
1 ATATTTATAAATTTTAAAAAATA
33627681 AGTTTGGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 12 0.57
23 2 0.10
24 1 0.05
25 6 0.29
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
ATATTTATAAATTTTAAAAAATAT
Found at i:33628227 original size:18 final size:18
Alignment explanation
Indices: 33628200--33628234 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33628190 TATTTGAACA
* *
33628200 TTTATGTATTCTTTTGCT
1 TTTATATATTATTTTGCT
33628218 TTTATATATTATTTTGC
1 TTTATATATTATTTTGC
33628235 AGCTATTTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.09, G:0.09, T:0.66
Consensus pattern (18 bp):
TTTATATATTATTTTGCT
Found at i:33628962 original size:22 final size:22
Alignment explanation
Indices: 33628937--33628998 Score: 90
Period size: 22 Copynumber: 2.8 Consensus size: 22
33628927 AGAAGATATG
33628937 GAGGCCTAGAGACGTCCAGATT
1 GAGGCCTAGAGACGTCCAGATT
**
33628959 GAGGCCTAGAGATATCCAGATT
1 GAGGCCTAGAGACGTCCAGATT
33628981 GAGGCCTAGA-ATCGTCCA
1 GAGGCCTAGAGA-CGTCCA
33628999 CCTACCTGTC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 1 0.03
22 34 0.97
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.19
Consensus pattern (22 bp):
GAGGCCTAGAGACGTCCAGATT
Found at i:33633471 original size:51 final size:51
Alignment explanation
Indices: 33633374--33633559 Score: 264
Period size: 51 Copynumber: 3.6 Consensus size: 51
33633364 TGATATATAA
* * * *
33633374 TCATCGGACCTCTTATTCCTTATAGGAATCCATAAACTCACGATGACACTTAG
1 TCATCGGACCT-TTAATCCATAAAGG-ATTCATAAACTCACGATGACACTTAG
* *
33633427 TCATCGGACCTTTAATCCATAAAGGACTCATAAACTTACGATGACACTTAG
1 TCATCGGACCTTTAATCCATAAAGGATTCATAAACTCACGATGACACTTAG
* ** *
33633478 TCATCGGACCATTAATCCATAAAGGATTCATTCACTCACAATGACACTTAG
1 TCATCGGACCTTTAATCCATAAAGGATTCATAAACTCACGATGACACTTAG
33633529 TCATCGGACCTTTAATCCATAAAGGATTCAT
1 TCATCGGACCTTTAATCCATAAAGGATTCAT
33633560 TTGCTCTCAA
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
51 98 0.82
52 11 0.09
53 11 0.09
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (51 bp):
TCATCGGACCTTTAATCCATAAAGGATTCATAAACTCACGATGACACTTAG
Found at i:33633560 original size:51 final size:51
Alignment explanation
Indices: 33633374--33633589 Score: 261
Period size: 51 Copynumber: 4.2 Consensus size: 51
33633364 TGATATATAA
* * * * * *
33633374 TCATCGGACCTCTTATTCCTTATAGGAATCCATAAACTCACGATGACACTTAG
1 TCATCGGACCT-TTAATCCATAAAGG-ATTCATTAACTCACAATGACACTTAG
* * * *
33633427 TCATCGGACCTTTAATCCATAAAGGACTCATAAACTTACGATGACACTTAG
1 TCATCGGACCTTTAATCCATAAAGGATTCATTAACTCACAATGACACTTAG
* *
33633478 TCATCGGACCATTAATCCATAAAGGATTCATTCACTCACAATGACACTTAG
1 TCATCGGACCTTTAATCCATAAAGGATTCATTAACTCACAATGACACTTAG
** *
33633529 TCATCGGACCTTTAATCCATAAAGGATTCATTTGCTCTCAATGACACTTAG
1 TCATCGGACCTTTAATCCATAAAGGATTCATTAACTCACAATGACACTTAG
* *
33633580 TTATTGGACC
1 TCATCGGACC
33633590 CTTTCGTTAA
Statistics
Matches: 145, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
51 123 0.85
52 11 0.08
53 11 0.08
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (51 bp):
TCATCGGACCTTTAATCCATAAAGGATTCATTAACTCACAATGACACTTAG
Found at i:33640719 original size:53 final size:52
Alignment explanation
Indices: 33640639--33640787 Score: 160
Period size: 51 Copynumber: 2.9 Consensus size: 52
33640629 TTCATTTAAT
* * ** * * *
33640639 ACTCACGATGATA-TATAGTCATCGGACCTCTTGTTTCATATAGGAATCCATAA
1 ACTCACGATGACAGT-TAGTCATCGGACCTATTAATCCATAAAGG-ATCAATAA
* **
33640692 ACTCACGATGACAGTTAGTCATCGGACC-ATTAATCCATAAAGGATTAATTC
1 ACTCACGATGACAGTTAGTCATCGGACCTATTAATCCATAAAGGATCAATAA
*
33640743 ACTCACGATGACAGTTAGTCATCAGACCT-TTAATCCATAAAGGAT
1 ACTCACGATGACAGTTAGTCATCGGACCTATTAATCCATAAAGGAT
33640788 TCATTTGCTC
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
51 47 0.57
52 10 0.12
53 25 0.30
54 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (52 bp):
ACTCACGATGACAGTTAGTCATCGGACCTATTAATCCATAAAGGATCAATAA
Found at i:33640755 original size:51 final size:51
Alignment explanation
Indices: 33640692--33640821 Score: 188
Period size: 51 Copynumber: 2.5 Consensus size: 51
33640682 GAATCCATAA
33640692 ACTCACGATGACAGTTAGTCATCGGACCATTAATCCATAAAGGATTAATTC
1 ACTCACGATGACAGTTAGTCATCGGACCATTAATCCATAAAGGATTAATTC
* * * *
33640743 ACTCACGATGACAGTTAGTCATCAGACCTTTAATCCATAAAGGATTCATTT
1 ACTCACGATGACAGTTAGTCATCGGACCATTAATCCATAAAGGATTAATTC
* * * *
33640794 GCTCTCGATGACACTTAATCATCGGACC
1 ACTCACGATGACAGTTAGTCATCGGACC
33640822 CTTTCGTTTA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 70 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.28
Consensus pattern (51 bp):
ACTCACGATGACAGTTAGTCATCGGACCATTAATCCATAAAGGATTAATTC
Found at i:33642239 original size:21 final size:20
Alignment explanation
Indices: 33642215--33642273 Score: 73
Period size: 21 Copynumber: 2.9 Consensus size: 20
33642205 TAAAAGTAAG
*
33642215 ACTTGTTTCGGTAGAAGAGTC
1 ACTTGTATCGGTAGAAGA-TC
* *
33642236 ACTTGTATCGATAGAATTATC
1 ACTTGTATCGGTAGAA-GATC
33642257 ACTTGTATCGGTAGAAG
1 ACTTGTATCGGTAGAAG
33642274 TCTGCACTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
21 31 0.97
22 1 0.03
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34
Consensus pattern (20 bp):
ACTTGTATCGGTAGAAGATC
Found at i:33644356 original size:23 final size:25
Alignment explanation
Indices: 33644320--33644365 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
33644310 TGATAATATG
33644320 TTTTGATATAAAAAATTAAAGTTTT
1 TTTTGATATAAAAAATTAAAGTTTT
*
33644345 TTTTGA-AT-AAAAGTTAAAGTT
1 TTTTGATATAAAAAATTAAAGTT
33644366 GAACAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
24 2 0.10
25 6 0.30
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (25 bp):
TTTTGATATAAAAAATTAAAGTTTT
Found at i:33648036 original size:30 final size:29
Alignment explanation
Indices: 33647974--33648037 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
33647964 TTTGTGCTAA
* **
33647974 ATTTTGACAATTTTGTATACTTTTTTGGT
1 ATTTTGACAATTTTGTATAATTTTTTAAT
33648003 ATTTT-ACAATTTTGTATAATACTTTTTAAT
1 ATTTTGACAATTTTGTATAAT--TTTTTAAT
33648033 ATTTT
1 ATTTT
33648038 TTATATTTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 14 0.47
29 5 0.17
30 11 0.37
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (29 bp):
ATTTTGACAATTTTGTATAATTTTTTAAT
Found at i:33648512 original size:41 final size:41
Alignment explanation
Indices: 33648452--33648534 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
33648442 TAGGGAGAGT
*
33648452 TCTCACAAATAGCGTAGTTCACTTCCCATCTTTGAGGAATA
1 TCTCACAAATAGCGCAGTTCACTTCCCATCTTTGAGGAATA
33648493 TCTCACAAATAGCGCAGTTCACTTCCCATCTTTGAGGAATA
1 TCTCACAAATAGCGCAGTTCACTTCCCATCTTTGAGGAATA
33648534 T
1 T
33648535 ACTTGCTGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (41 bp):
TCTCACAAATAGCGCAGTTCACTTCCCATCTTTGAGGAATA
Found at i:33653169 original size:13 final size:13
Alignment explanation
Indices: 33653151--33653175 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33653141 ATTTAAACCC
33653151 ATTTTAAAGATTT
1 ATTTTAAAGATTT
33653164 ATTTTAAAGATT
1 ATTTTAAAGATT
33653176 AAATTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (13 bp):
ATTTTAAAGATTT
Found at i:33653196 original size:17 final size:17
Alignment explanation
Indices: 33653160--33653270 Score: 123
Period size: 17 Copynumber: 6.3 Consensus size: 17
33653150 CATTTTAAAG
*
33653160 ATTTATTTTAAAGATTAA
1 ATTTATTTTAAA-TTTAA
*
33653178 ATTTATTTTGAATTTAA
1 ATTTATTTTAAATTTAA
*
33653195 ATTTATTTTAAGTTTAA
1 ATTTATTTTAAATTTAA
*
33653212 ATTTGATTTAAAATTTAA
1 ATTT-ATTTTAAATTTAA
* * *
33653230 ACTTAATTTAAATTGAA
1 ATTTATTTTAAATTTAA
33653247 ATTTATATTTAAATTTAA
1 ATTTAT-TTTAAATTTAA
33653265 GATTTA
1 -ATTTA
33653271 ATATAAATAT
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
17 37 0.48
18 35 0.45
19 5 0.06
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.52
Consensus pattern (17 bp):
ATTTATTTTAAATTTAA
Found at i:33653205 original size:35 final size:34
Alignment explanation
Indices: 33653160--33653270 Score: 125
Period size: 35 Copynumber: 3.1 Consensus size: 34
33653150 CATTTTAAAG
*
33653160 ATTTATTTTAAAGATTAAATTTATTTTGAATTTAA
1 ATTTATTTT-AAGATTAAATTTATTTTAAATTTAA
* *
33653195 ATTTATTTTAAGTTTAAATTTGATTTAAAATTTAA
1 ATTTATTTTAAGATTAAATTT-ATTTTAAATTTAA
* *
33653230 ACTTAATTTAA-ATTGAAATTTATATTTAAATTTAA
1 ATTTATTTTAAGATT-AAATTTAT-TTTAAATTTAA
33653265 GATTTA
1 -ATTTA
33653271 ATATAAATAT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
34 15 0.23
35 45 0.70
36 4 0.06
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.52
Consensus pattern (34 bp):
ATTTATTTTAAGATTAAATTTATTTTAAATTTAA
Found at i:33653271 original size:7 final size:6
Alignment explanation
Indices: 33653174--33653271 Score: 78
Period size: 6 Copynumber: 16.7 Consensus size: 6
33653164 ATTTTAAAGA
* * * * *
33653174 TTAAAT TT-ATT TTGAAT TTAAAT TT-ATT TTAAGT TTAAAT TT-GAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* * *
33653219 TTAAAAT TTAAAC TT-AAT TTAAAT TGAAAT TTATAT TTAAAT TTAAGAT
1 TT-AAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAA-AT
33653268 TTAA
1 TTAA
33653272 TATAAATATT
Statistics
Matches: 72, Mismatches: 14, Indels: 11
0.74 0.14 0.11
Matches are distributed among these distances:
5 16 0.22
6 46 0.64
7 10 0.14
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (6 bp):
TTAAAT
Found at i:33653277 original size:18 final size:17
Alignment explanation
Indices: 33653160--33653278 Score: 112
Period size: 18 Copynumber: 6.8 Consensus size: 17
33653150 CATTTTAAAG
* *
33653160 ATTTATTTTAAAGATTAA
1 ATTTAATTTAAA-TTTAA
* *
33653178 ATTTATTTTGAATTTAA
1 ATTTAATTTAAATTTAA
* *
33653195 ATTTATTTTAAGTTTAA
1 ATTTAATTTAAATTTAA
*
33653212 ATTTGATTTAAAATTTAA
1 ATTTAATTT-AAATTTAA
* *
33653230 ACTTAATTTAAATTGAA
1 ATTTAATTTAAATTTAA
33653247 ATTTATATTTAAATTTAA
1 ATTTA-ATTTAAATTTAA
*
33653265 GATTTAATATAAAT
1 -ATTTAATTTAAAT
33653279 ATTGAATGTC
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
17 37 0.44
18 43 0.51
19 5 0.06
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (17 bp):
ATTTAATTTAAATTTAA
Found at i:33655206 original size:87 final size:88
Alignment explanation
Indices: 33655103--33655360 Score: 229
Period size: 87 Copynumber: 2.9 Consensus size: 88
33655093 GGAGGTCCCA
* * *
33655103 AAACTATCCAGAAATTATATCTTGACC-CTCGAACTTCCAAAAATTATATTTTTAATCCCT-AAA
1 AAACTATCCAAAAATTACATCTTGACCTCT-GAACTTCCAAAAATTACATTTTTAA-CCCTGAAA
*
33655166 CTTTTAAAAATTACATTTTGCCCCC
64 CTTTCAAAAATTACATTTTGCCCCC
* * * * *
33655191 AAACT-TCCAAAAATTACATTTTTACCTCTGAACTTTCAAAAATTACATTTTTTACCTTGAAACT
1 AAACTATCCAAAAATTACATCTTGACCTCTGAACTTCCAAAAATTACATTTTTAACCCTGAAACT
* *
33655255 TTCAAAAATTACATTTTTACCCTC
66 TTCAAAAATTACA-TTTTGCCCCC
* * * * * * * * * * * *
33655279 GAACT-TTCAAAAATTCCATTTTTGGCCTTTAAACTTTCAAAAATTCCATTTTTGATCTTGAAAC
1 AAACTATCCAAAAATTACA-TCTTGACCTCTGAACTTCCAAAAATTACATTTTTAACCCTGAAAC
33655343 TTTC-AAAATTACCATTTT
65 TTTCAAAAATTA-CATTTT
33655361 ACCACCAGAT
Statistics
Matches: 144, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
86 3 0.02
87 56 0.39
88 41 0.28
89 44 0.31
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.39
Consensus pattern (88 bp):
AAACTATCCAAAAATTACATCTTGACCTCTGAACTTCCAAAAATTACATTTTTAACCCTGAAACT
TTCAAAAATTACATTTTGCCCCC
Found at i:33655270 original size:59 final size:59
Alignment explanation
Indices: 33655134--33655360 Score: 230
Period size: 59 Copynumber: 3.8 Consensus size: 59
33655124 TTGACCCTCG
* * * **
33655134 AACTTCCAAAAATTATATTTTTAATCCCTAAACTTTTAAAAATTACA--TTTTGCCCCCA
1 AACTTCCAAAAATTACATTTTTAA-CCCTGAACTTTCAAAAATTACATTTTTTGCCTTCA
* *
33655192 AACTTCCAAAAATTACATTTTT-ACCTCTGAACTTTCAAAAATTACATTTTTTACCTTGA
1 AACTTCCAAAAATTACATTTTTAACC-CTGAACTTTCAAAAATTACATTTTTTGCCTTCA
* * * *
33655251 AACTTTCAAAAATTACATTTTT-ACCCTCGAACTTTCAAAAATTCCATTTTTGGCCTTTA
1 AACTTCCAAAAATTACATTTTTAACCCT-GAACTTTCAAAAATTACATTTTTTGCCTTCA
* * * * *
33655310 AACTTTCAAAAATTCCATTTTTGATCTTGAAACTTTC-AAAATTACCATTTT
1 AACTTCCAAAAATTACATTTTTAACCCTG-AACTTTCAAAAATTA-CATTTT
33655361 ACCACCAGAT
Statistics
Matches: 146, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
56 2 0.01
57 19 0.13
58 23 0.16
59 86 0.59
60 16 0.11
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.41
Consensus pattern (59 bp):
AACTTCCAAAAATTACATTTTTAACCCTGAACTTTCAAAAATTACATTTTTTGCCTTCA
Found at i:33655351 original size:29 final size:29
Alignment explanation
Indices: 33655134--33655360 Score: 212
Period size: 30 Copynumber: 7.7 Consensus size: 29
33655124 TTGACCCTCG
* * *
33655134 AACTTCCAAAAATTATATTTTTAATCCCT-A
1 AACTTTCAAAAATTACATTTTT-A-CCTTGA
* * ***
33655164 AACTTTTAAAAATTACA-TTTTGCCCCCA
1 AACTTTCAAAAATTACATTTTTACCTTGA
*
33655192 AACTTCCAAAAATTACATTTTTACCTCTG-
1 AACTTTCAAAAATTACATTTTTACCT-TGA
33655221 AACTTTCAAAAATTACATTTTTTACCTTGA
1 AACTTTCAAAAATTACA-TTTTTACCTTGA
*
33655251 AACTTTCAAAAATTACATTTTTACCCTCG-
1 AACTTTCAAAAATTACATTTTTA-CCTTGA
* * *
33655280 AACTTTCAAAAATTCCATTTTTGGCCTTTA
1 AACTTTCAAAAATTACATTTTT-ACCTTGA
* *
33655310 AACTTTCAAAAATTCCATTTTTGATCTTGA
1 AACTTTCAAAAATTACATTTTT-ACCTTGA
33655340 AACTTTC-AAAATTACCATTTT
1 AACTTTCAAAAATTA-CATTTT
33655361 ACCACCAGAT
Statistics
Matches: 167, Mismatches: 21, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
27 3 0.02
28 16 0.10
29 64 0.38
30 84 0.50
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.41
Consensus pattern (29 bp):
AACTTTCAAAAATTACATTTTTACCTTGA
Found at i:33659851 original size:20 final size:20
Alignment explanation
Indices: 33659826--33659864 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33659816 AGGGGTCAAA
*
33659826 AAAAAAGAGAAAGAAAGAAT
1 AAAAAAGAAAAAGAAAGAAT
*
33659846 AAAAAAGAAAAAGGAAGAA
1 AAAAAAGAAAAAGAAAGAA
33659865 AAAGGAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.03
Consensus pattern (20 bp):
AAAAAAGAAAAAGAAAGAAT
Found at i:33659872 original size:17 final size:17
Alignment explanation
Indices: 33659827--33659875 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
33659817 GGGGTCAAAA
*
33659827 AAAAAGAGAAAGAAAGAAT
1 AAAAAG-GAAA-AAAGAAG
* *
33659846 AAAAAAGAAAAAGGAAG
1 AAAAAGGAAAAAAGAAG
33659863 AAAAAGGAAAAAA
1 AAAAAGGAAAAAA
33659876 TGTCAAGATG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 16 0.64
18 4 0.16
19 5 0.20
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (17 bp):
AAAAAGGAAAAAAGAAG
Found at i:33660735 original size:7 final size:7
Alignment explanation
Indices: 33660719--33660762 Score: 56
Period size: 7 Copynumber: 6.4 Consensus size: 7
33660709 AAAAGAGAGG
*
33660719 AAAAACA
1 AAAAAGA
33660726 AAAACA-A
1 AAAA-AGA
33660733 AAAAAGA
1 AAAAAGA
33660740 AAAAAGA
1 AAAAAGA
33660747 AAAAAG-
1 AAAAAGA
33660753 AAAAAGA
1 AAAAAGA
33660760 AAA
1 AAA
33660763 GGAGAGGTCG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 7 0.21
7 26 0.76
8 1 0.03
ACGTcount: A:0.86, C:0.05, G:0.09, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:33662914 original size:29 final size:30
Alignment explanation
Indices: 33662882--33663221 Score: 282
Period size: 29 Copynumber: 11.7 Consensus size: 30
33662872 TTGGACATCC
33662882 AGGGGT-AAAATGGTAA-TTTTGAAAGTTTT
1 AGGGGTAAAAAT-GTAATTTTTGAAAGTTTT
* * * *
33662911 A-GGGTCAAAATGGAATTTTTGGAAGCTTT
1 AGGGGTAAAAATGTAATTTTTGAAAGTTTT
* *
33662940 -GGGGTCAAAAATGAAATTTTTAAAAG-TTT
1 AGGGGT-AAAAATGTAATTTTTGAAAGTTTT
*
33662969 AAGGGTAAAAATGTAATTTTTGAAAGTTTT
1 AGGGGTAAAAATGTAATTTTTGAAAGTTTT
* **
33662999 A-GGGTCAAAATGTAATTTTTGAAAGTTCG
1 AGGGGTAAAAATGTAATTTTTGAAAGTTTT
* *
33663028 A-GGGTAAAAATATAATTTTTGAAAGTTTC
1 AGGGGTAAAAATGTAATTTTTGAAAGTTTT
* *
33663057 A-AGGTCAAAATGTAATTTTTGAAAG--TT
1 AGGGGTAAAAATGTAATTTTTGAAAGTTTT
* ** *
33663084 CGGGGGCAAAATGTAATTTTTGGAAG--TT
1 AGGGGTAAAAATGTAATTTTTGAAAGTTTT
* **
33663112 AGGGGCAAAAATGTAATTTTTGGGA-TTTT
1 AGGGGTAAAAATGTAATTTTTGAAAGTTTT
33663141 AGGGGTAAAAATGTAATTTTT-AGAAG-TTT
1 AGGGGTAAAAATGTAATTTTTGA-AAGTTTT
* *
33663170 AAGGGTCAAAAATGTAATTTTT-ATAAG-TTC
1 AGGGGT-AAAAATGTAATTTTTGA-AAGTTTT
* * *
33663200 GGGGGTCAAAATATAATTTTTG
1 AGGGGTAAAAATGTAATTTTTG
33663222 GATAGTTTAA
Statistics
Matches: 259, Mismatches: 39, Indels: 25
0.80 0.12 0.08
Matches are distributed among these distances:
27 1 0.00
28 51 0.20
29 158 0.61
30 49 0.19
ACGTcount: A:0.36, C:0.04, G:0.24, T:0.36
Consensus pattern (30 bp):
AGGGGTAAAAATGTAATTTTTGAAAGTTTT
Found at i:33663033 original size:58 final size:59
Alignment explanation
Indices: 33662888--33663221 Score: 335
Period size: 59 Copynumber: 5.7 Consensus size: 59
33662878 ATCCAGGGGT
** * * * * *
33662888 AAAATGGTAA-TTTTGAAAGTTTTAGGGTCAAAATGGAATTTTTGGAAGCTTTGGGGTCA
1 AAAAT-GTAATTTTTGAAAGTTCGAGGGTAAAAATGTAATTTTTGAAAGTTTTAGGGTCA
* * **
33662947 AAAATGAAATTTTTAAAAGTTTAAGGGTAAAAATGTAATTTTTGAAAGTTTTAGGGTC-
1 AAAATGTAATTTTTGAAAGTTCGAGGGTAAAAATGTAATTTTTGAAAGTTTTAGGGTCA
* * *
33663005 AAAATGTAATTTTTGAAAGTTCGAGGGTAAAAATATAATTTTTGAAAGTTTCAAGGTC-
1 AAAATGTAATTTTTGAAAGTTCGAGGGTAAAAATGTAATTTTTGAAAGTTTTAGGGTCA
** * *
33663063 AAAATGTAATTTTTGAAAGTTCG-GGGGCAAAATGTAATTTTTGGAAG--TTAGGGGCA
1 AAAATGTAATTTTTGAAAGTTCGAGGGTAAAAATGTAATTTTTGAAAGTTTTAGGGTCA
** ** *
33663119 AAAATGTAATTTTTGGGA-TTTTAGGGGTAAAAATGTAATTTTT-AGAAGTTTAAGGGTCA
1 AAAATGTAATTTTTGAAAGTTCGA-GGGTAAAAATGTAATTTTTGA-AAGTTTTAGGGTCA
* * *
33663178 AAAATGTAATTTTT-ATAAGTTCGGGGGTCAAAATATAATTTTTG
1 AAAATGTAATTTTTGA-AAGTTCGAGGGTAAAAATGTAATTTTTG
33663222 GATAGTTTAA
Statistics
Matches: 227, Mismatches: 38, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
55 7 0.03
56 16 0.07
57 40 0.18
58 77 0.34
59 85 0.37
60 2 0.01
ACGTcount: A:0.37, C:0.04, G:0.23, T:0.37
Consensus pattern (59 bp):
AAAATGTAATTTTTGAAAGTTCGAGGGTAAAAATGTAATTTTTGAAAGTTTTAGGGTCA
Found at i:33663045 original size:87 final size:86
Alignment explanation
Indices: 33662884--33663233 Score: 381
Period size: 87 Copynumber: 4.0 Consensus size: 86
33662874 GGACATCCAG
* * *
33662884 GGGT-AAAATGGTAA-TTTTGAAAGTTTTAGGGTCAAAATGGAATTTTTGGAAGCTTTGGGGTCA
1 GGGTAAAAAT-GTAATTTTTGAAAGTTTTAGGGTCAAAATGTAATTTTTGAAAG-TTCGGGGT-A
*
33662947 AAAATGA-AATTTTTAAAAGTTTAA
63 AAAAT-ATAATTTTTGAAAGTTTAA
33662971 GGGTAAAAATGTAATTTTTGAAAGTTTTAGGGTCAAAATGTAATTTTTGAAAGTTCGAGGGTAAA
1 GGGTAAAAATGTAATTTTTGAAAGTTTTAGGGTCAAAATGTAATTTTTGAAAGTTCG-GGGTAAA
33663036 AATATAATTTTTGAAAGTTTCAA
65 AATATAATTTTTGAAAGTTT-AA
* ** * * * *
33663059 -GGTCAAAATGTAATTTTTGAAAG-TTCGGGGGCAAAATGTAATTTTTGGAAGTTAGGGGCAAAA
1 GGGTAAAAATGTAATTTTTGAAAGTTTTAGGGTCAAAATGTAATTTTTGAAAGTTCGGGGTAAAA
* ** * *
33663122 ATGTAATTTTTGGGATTTTAG
66 ATATAATTTTTGAAAGTTTAA
*
33663143 GGGTAAAAATGTAATTTTT-AGAAGTTTAAGGGTCAAAAATGTAATTTTT-ATAAGTTCGGGGGT
1 GGGTAAAAATGTAATTTTTGA-AAGTTTTAGGGTC-AAAATGTAATTTTTGA-AAGTTC-GGGGT
* *
33663206 CAAAATATAATTTTTGGATAGTTTAA
62 AAAAATATAATTTTT-GAAAGTTTAA
33663232 GG
1 GG
33663234 ACCTCCAAGG
Statistics
Matches: 222, Mismatches: 29, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
84 2 0.01
85 42 0.19
86 34 0.15
87 72 0.32
88 64 0.29
89 8 0.04
ACGTcount: A:0.36, C:0.04, G:0.24, T:0.37
Consensus pattern (86 bp):
GGGTAAAAATGTAATTTTTGAAAGTTTTAGGGTCAAAATGTAATTTTTGAAAGTTCGGGGTAAAA
ATATAATTTTTGAAAGTTTAA
Found at i:33664358 original size:23 final size:22
Alignment explanation
Indices: 33664329--33664374 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
33664319 TAGTCCTTTC
33664329 AAAATTATTATTATTTAATATTA
1 AAAATTATTATTA-TTAATATTA
*
33664352 AAAATTATTATTATTATTATTA
1 AAAATTATTATTATTAATATTA
33664374 A
1 A
33664375 TTTAATACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
AAAATTATTATTATTAATATTA
Found at i:33664996 original size:14 final size:14
Alignment explanation
Indices: 33664951--33664999 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 14
33664941 TTTGGACCTT
33664951 TTGGGTCAATTGTAA
1 TTGGGTCAA-TGTAA
** *
33664966 TTGGGTTTA-GGAA
1 TTGGGTCAATGTAA
33664979 TTGGGTCAATGTAA
1 TTGGGTCAATGTAA
33664993 TTGGGTC
1 TTGGGTC
33665000 TTAAATTGGG
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
13 10 0.37
14 10 0.37
15 7 0.26
ACGTcount: A:0.22, C:0.06, G:0.33, T:0.39
Consensus pattern (14 bp):
TTGGGTCAATGTAA
Found at i:33664997 original size:27 final size:27
Alignment explanation
Indices: 33664951--33665011 Score: 90
Period size: 28 Copynumber: 2.3 Consensus size: 27
33664941 TTTGGACCTT
33664951 TTGGGTCAATTGTAATTGGGT-TTAGGAA
1 TTGGGTCAATTGTAATTGGGTCTTA--AA
33664979 TTGGGTCAA-TGTAATTGGGTCTTAAA
1 TTGGGTCAATTGTAATTGGGTCTTAAA
33665005 TTGGGTC
1 TTGGGTC
33665012 TTTTTGTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
26 9 0.28
27 11 0.34
28 12 0.38
ACGTcount: A:0.23, C:0.07, G:0.31, T:0.39
Consensus pattern (27 bp):
TTGGGTCAATTGTAATTGGGTCTTAAA
Found at i:33665084 original size:6 final size:6
Alignment explanation
Indices: 33665068--33665165 Score: 87
Period size: 6 Copynumber: 16.7 Consensus size: 6
33665058 AATATTTATA
* *
33665068 TTAAAT CTTAAAT TTAAAT ATAAAT TTAAAT TTAAA- TTAAGT TTAAATT
1 TTAAAT -TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAA-T
* * * * *
33665117 TTAAA- TCAAAT TTAAAC TTAAA- ATAAAT TTAAAT TCAAA- ATAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
33665162 TTAA
1 TTAA
33665166 TCTTTAAAAT
Statistics
Matches: 73, Mismatches: 13, Indels: 11
0.75 0.13 0.11
Matches are distributed among these distances:
5 15 0.21
6 46 0.63
7 12 0.16
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (6 bp):
TTAAAT
Found at i:33665096 original size:18 final size:17
Alignment explanation
Indices: 33665069--33665179 Score: 132
Period size: 17 Copynumber: 6.3 Consensus size: 17
33665059 ATATTTATAT
33665069 TAAATCTTAAATTTAAATA
1 TAAAT-TTAAATTTAAA-A
*
33665088 TAAATTTAAATTTAAAT
1 TAAATTTAAATTTAAAA
* *
33665105 TAAGTTTAAATTTTAAA
1 TAAATTTAAATTTAAAA
*
33665122 TCAAATTTAAACTTAAAA
1 T-AAATTTAAATTTAAAA
*
33665140 TAAATTTAAATTCAAAA
1 TAAATTTAAATTTAAAA
*
33665157 TAAATTTAATCTTTAAAA
1 TAAATTTAA-ATTTAAAA
33665175 TAAAT
1 TAAAT
33665180 CTTTAAAATG
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
17 38 0.48
18 36 0.46
19 5 0.06
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:33665112 original size:11 final size:11
Alignment explanation
Indices: 33665075--33665165 Score: 69
Period size: 11 Copynumber: 7.9 Consensus size: 11
33665065 ATATTAAATC
33665075 TTAAATTTAAA
1 TTAAATTTAAA
33665086 TATAAATTTAAA
1 T-TAAATTTAAA
*
33665098 TTTAAA-TTAAGT
1 -TTAAATTTAA-A
33665110 TTAAATTTTAAA
1 TTAAA-TTTAAA
*
33665122 TCAAATTTAAA
1 TTAAATTTAAA
*
33665133 CTTAAA-ATAAA
1 -TTAAATTTAAA
*
33665144 TTTAAATTCAAA
1 -TTAAATTTAAA
*
33665156 ATAAATTTAA
1 TTAAATTTAA
33665166 TCTTTAAAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 14
0.72 0.11 0.16
Matches are distributed among these distances:
11 33 0.52
12 25 0.40
13 5 0.08
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:33665114 original size:17 final size:17
Alignment explanation
Indices: 33665061--33665179 Score: 121
Period size: 18 Copynumber: 6.8 Consensus size: 17
33665051 GACATTCAAT
*
33665061 ATTTATATTAAATCTTAA
1 ATTTAAATTAAAT-TTAA
33665079 ATTTAAATATAAATTTAA
1 ATTTAAAT-TAAATTTAA
*
33665097 ATTTAAATTAAGTTTAA
1 ATTTAAATTAAATTTAA
*
33665114 ATTTTAAATCAAATTTAA
1 A-TTTAAATTAAATTTAA
* *
33665132 ACTTAAAATAAATTTAA
1 ATTTAAATTAAATTTAA
* *
33665149 ATTCAAAATAAATTTAA
1 ATTTAAATTAAATTTAA
* *
33665166 TCTTTAAAATAAAT
1 -ATTTAAATTAAAT
33665180 CTTTAAAATG
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
17 37 0.43
18 45 0.52
19 5 0.06
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (17 bp):
ATTTAAATTAAATTTAA
Found at i:33665173 original size:13 final size:13
Alignment explanation
Indices: 33665164--33665188 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33665154 AAATAAATTT
33665164 AATCTTTAAAATA
1 AATCTTTAAAATA
33665177 AATCTTTAAAAT
1 AATCTTTAAAAT
33665189 GGGTTTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
AATCTTTAAAATA
Found at i:33665173 original size:35 final size:34
Alignment explanation
Indices: 33665069--33665179 Score: 125
Period size: 35 Copynumber: 3.1 Consensus size: 34
33665059 ATATTTATAT
* *
33665069 TAAATCTTAAATTTAAATATAAATTTAAATTTAAAT
1 TAAAT-TTAAATTTAAA-ATAAATTTAACTTTAAAA
* *
33665105 TAAGTTTAAATTTTAAATCAAATTTAAAC-TTAAAA
1 TAAATTTAAATTTAAAAT-AAATTT-AACTTTAAAA
*
33665140 TAAATTTAAATTCAAAATAAATTTAATCTTTAAAA
1 TAAATTTAAATTTAAAATAAATTTAA-CTTTAAAA
33665175 TAAAT
1 TAAAT
33665180 CTTTAAAATG
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
33 2 0.03
34 9 0.14
35 47 0.73
36 6 0.09
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (34 bp):
TAAATTTAAATTTAAAATAAATTTAACTTTAAAA
Found at i:33665889 original size:39 final size:39
Alignment explanation
Indices: 33665813--33665894 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
33665803 TTAGGGTAGT
* * *
33665813 AGATTGGTTGATGATGATCTGCCCCAGGTTCGGGGTAAG
1 AGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAA
*
33665852 AGATTGGTTGATGATGATCTGCTCCAAGCTCGGGGTAAA
1 AGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAA
33665891 AGAT
1 AGAT
33665895 CAAATGGCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.28
Consensus pattern (39 bp):
AGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAA
Found at i:33666460 original size:50 final size:49
Alignment explanation
Indices: 33666188--33666443 Score: 291
Period size: 49 Copynumber: 5.2 Consensus size: 49
33666178 CGACTTAAAC
** * * *
33666188 CTTTCCCTTCAAATCTTCGTGGTACTGGATCTGTCATTGCGGCTTAGAT
1 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
* * *
33666237 CTTTCCTTTGATGTCTTCATGGTACTGGATCCGCCGTTGCGGCTTAGAT
1 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
* *
33666286 CTTTCTCTTCATGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAGAT
1 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
* * *
33666335 CTTTCCCTTCATGTCTTCGTGGTACTAGATCTGCCATTGCGGTCTTAGAT
1 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTGCGG-CTTAGAT
* * * * * *
33666385 CTTTCTCGTT-GTGTCTTCTGAGGTACATGG-TCTGCCGTTGCGACTTAGAC
1 CTTTC-CCTTCATGTCTTC-GTGGTAC-TGGATCCGCCGTTGCGGCTTAGAT
33666435 CTTTCCCTT
1 CTTTCCCTT
33666444 TTGTCTTTTT
Statistics
Matches: 177, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
49 125 0.71
50 30 0.17
51 20 0.11
52 2 0.01
ACGTcount: A:0.13, C:0.26, G:0.22, T:0.39
Consensus pattern (49 bp):
CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
Found at i:33669535 original size:22 final size:23
Alignment explanation
Indices: 33669506--33669551 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
33669496 ATTTTAAGTT
* *
33669506 TTAAAATTTTAGAAATAAAAATA
1 TTAAATTTTTAAAAATAAAAATA
33669529 TTAAATTTTTAAAAATAAAAATA
1 TTAAATTTTTAAAAATAAAAATA
33669552 AAAAATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (23 bp):
TTAAATTTTTAAAAATAAAAATA
Found at i:33669557 original size:23 final size:23
Alignment explanation
Indices: 33669508--33669557 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
33669498 TTTAAGTTTT
* *
33669508 AAAA-TTTTAGAAATAAAAATAT
1 AAAATTTTTAAAAATAAAAATAA
*
33669530 TAAATTTTTAAAAATAAAAATAA
1 AAAATTTTTAAAAATAAAAATAA
33669553 AAAAT
1 AAAAT
33669558 ATTAAATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
AAAATTTTTAAAAATAAAAATAA
Found at i:33669562 original size:22 final size:23
Alignment explanation
Indices: 33669508--33669563 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
33669498 TTTAAGTTTT
* *
33669508 AAAATTTT-AGAAATAAAAATAT
1 AAAATTTTAAAAAATAAAAATAA
* *
33669530 TAAATTTTTAAAAATAAAAATAA
1 AAAATTTTAAAAAATAAAAATAA
*
33669553 AAAATATTAAA
1 AAAATTTTAAA
33669564 TTGTAAAAAC
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 7 0.26
23 20 0.74
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
AAAATTTTAAAAAATAAAAATAA
Found at i:33678332 original size:19 final size:19
Alignment explanation
Indices: 33678295--33678334 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
33678285 TTTATATTTA
**
33678295 AAAAATGTATATATTAATT
1 AAAAATGTATATAAAAATT
*
33678314 AAAAATTTATATAAAAATT
1 AAAAATGTATATAAAAATT
33678333 AA
1 AA
33678335 TTGATATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
AAAAATGTATATAAAAATT
Found at i:33678895 original size:16 final size:17
Alignment explanation
Indices: 33678874--33678911 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
33678864 ATAAATTATT
*
33678874 AAAAAT-TTTAAAAATA
1 AAAAATATTAAAAAATA
33678890 AAAAATATTAAAAAATA
1 AAAAATATTAAAAAATA
33678907 AAAAA
1 AAAAA
33678912 ATTGATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAATATTAAAAAATA
Found at i:33684643 original size:11 final size:11
Alignment explanation
Indices: 33684627--33684651 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
33684617 TAAGATAGTA
33684627 ATAACCTGCTC
1 ATAACCTGCTC
33684638 ATAACCTGCTC
1 ATAACCTGCTC
33684649 ATA
1 ATA
33684652 CTCAAGTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.32, G:0.08, T:0.28
Consensus pattern (11 bp):
ATAACCTGCTC
Found at i:33686062 original size:3 final size:3
Alignment explanation
Indices: 33686054--33686091 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
33686044 TAGAACTATA
*
33686054 AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT ATT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A
33686092 TTATTATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:33687531 original size:16 final size:16
Alignment explanation
Indices: 33687512--33687542 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33687502 GGCAAAATGT
33687512 AGAAAAAGAAAAAAAA
1 AGAAAAAGAAAAAAAA
*
33687528 AGAAAGAGAAAAAAA
1 AGAAAAAGAAAAAAA
33687543 GAACCCAAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AGAAAAAGAAAAAAAA
Found at i:33687539 original size:14 final size:14
Alignment explanation
Indices: 33687516--33687545 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
33687506 AAATGTAGAA
33687516 AAAGAAAAAAAAAG
1 AAAGAAAAAAAAAG
*
33687530 AAAGAGAAAAAAAG
1 AAAGAAAAAAAAAG
33687544 AA
1 AA
33687546 CCCAAGCGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAAAAAG
Found at i:33688042 original size:3 final size:3
Alignment explanation
Indices: 33688034--33688060 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
33688024 TCATTTTTAA
33688034 CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT
33688061 ATTTTTATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:33723399 original size:619 final size:621
Alignment explanation
Indices: 33722557--33723683 Score: 2078
Period size: 619 Copynumber: 1.8 Consensus size: 621
33722547 ATTCATTGTC
* *
33722557 ATGATCCACAGATGGCAAAACACTTACACTTTCCAAACAAAAATATGTACTTCTGAAAACTTGAT
1 ATGATCCACAGATGACAAAACACTTACACTTTCCAAACAAAAAAATGTACTTCTGAAAACTTGAT
* *
33722622 GGTCAAGAGTGTTTACTGCTCCAGATATAACTTGAGTTCAAGTCATACTAATCAAATTTATTATT
66 GGCCAAAAGTGTTTACTGCTCCAGATATAACTTGAGTTCAAGTCATACTAATCAAATTTATTATT
* *
33722687 TAAGCTTTATCTTATTATTGTAATTCACCAAAAAAAAATGTACATATGCTTCAGCACATGCCCTG
131 TAAACTTTATCCTATTATTGTAATTCACCAAAAAAAAATGTACATATGCTTCAGCACATGCCCTG
*
33722752 CCCAACCCACCCCTTCAATATCCTCTTTCAACTTCATTAATCTTTCATTTGATTCCA-TCTAATT
196 CCCAACCCACCCCTTCAACATCCTCTTTCAACTTCATTAATCTTTCATTTGATTCCATTCTAATT
* *
33722816 CTCATAAATATAATAAGACATCGAATTAATTATGAAATTATTAAAATATATTTACTTTAAAGGGT
261 CTCATAAATATAATAAGACATCGAATCAATTATGAAATTATTAAAATATATTTACTTTAAAAGGT
33722881 AATTAATATTATTATAAAAATATTTCCA-TTTTTTATACTTTTATATAATCTTAAAATAAAACAA
326 AATTAATATTATTATAAAAATATTTCCATTTTTTTATACTTTTATATAATCTTAAAATAAAACAA
33722945 ATGAAAAATATCATTTGAAAATAAGATACAAGATCAACAAATTCATATAAAAAAATTTCTCCTTA
391 ATGAAAAATATCATTTGAAAATAAGATACAAGATCAACAAATTCATATAAAAAAATTTCTCCTTA
*
33723010 CTCCAATAATAATGATTTATTGACATATTTTTAATAAGAAAAATTTTCATTCACTCACATGTGAG
456 CTCCAATAATAATGATTTATTAACATATTTTTAATAAGAAAAATTTTCATTCACTCACATGTGAG
33723075 TATGATAAAACCTAATAATAATAAAATTTTATTATTAAAATTAAAATTATATGTTTATTATTAAA
521 TATGATAAAACCTAATAATAATAAAATTTTATTATTAAAATTAAAATTATATGTTTATTATTAAA
33723140 ATTAAAATTCTATAATAATAAATAAATTTATTATTT
586 ATTAAAATTCTATAATAATAAATAAATTTATTATTT
* *
33723176 ATGATCCACAGATGACAAAACACTTACACTTTCCAAACAAAAAAATGTACTTTTGGAAACTTGAT
1 ATGATCCACAGATGACAAAACACTTACACTTTCCAAACAAAAAAATGTACTTCTGAAAACTTGAT
*
33723241 GGCCAAAAGTGTTTACTGCTCCAGATATAACTTGAGTTCAAGTCGTACTAATCAAATTTATTATT
66 GGCCAAAAGTGTTTACTGCTCCAGATATAACTTGAGTTCAAGTCATACTAATCAAATTTATTATT
*
33723306 TAAATTTTATCCTATTATTGTAATTCACCAAAAAAAAATGTACATATGCTTCAGCACATGCCCTG
131 TAAACTTTATCCTATTATTGTAATTCACCAAAAAAAAATGTACATATGCTTCAGCACATGCCCTG
33723371 CCCAACCCACCCCTTCAACATCCTCTTTCAACTTCATTAATCTTTCATTTGATTCCATTCTAATT
196 CCCAACCCACCCCTTCAACATCCTCTTTCAACTTCATTAATCTTTCATTTGATTCCATTCTAATT
33723436 CTCATAAATATAATAAGACATCGAATCAATTATGAAATTATTAAAATATATTTACTTTAAAAGGT
261 CTCATAAATATAATAAGACATCGAATCAATTATGAAATTATTAAAATATATTTACTTTAAAAGGT
* *
33723501 AATTAATATTATTATAAAAGTATTTTCATTTTTTTATACTTTTATATAATCTTAAAATAAAACAA
326 AATTAATATTATTATAAAAATATTTCCATTTTTTTATACTTTTATATAATCTTAAAATAAAACAA
*
33723566 ATGAAAAATATTATTTGAAAATAAGATACAAGATCAACAAATTCATATAAAAAAATTTCTCCTTA
391 ATGAAAAATATCATTTGAAAATAAGATACAAGATCAACAAATTCATATAAAAAAATTTCTCCTTA
*
33723631 CTCCAATAATAATGATTTATTAACATATTTTTAATAAGAAATATTTTCATTCA
456 CTCCAATAATAATGATTTATTAACATATTTTTAATAAGAAAAATTTTCATTCA
33723684 GTATGATAAA
Statistics
Matches: 488, Mismatches: 18, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
619 241 0.49
620 96 0.20
621 151 0.31
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (621 bp):
ATGATCCACAGATGACAAAACACTTACACTTTCCAAACAAAAAAATGTACTTCTGAAAACTTGAT
GGCCAAAAGTGTTTACTGCTCCAGATATAACTTGAGTTCAAGTCATACTAATCAAATTTATTATT
TAAACTTTATCCTATTATTGTAATTCACCAAAAAAAAATGTACATATGCTTCAGCACATGCCCTG
CCCAACCCACCCCTTCAACATCCTCTTTCAACTTCATTAATCTTTCATTTGATTCCATTCTAATT
CTCATAAATATAATAAGACATCGAATCAATTATGAAATTATTAAAATATATTTACTTTAAAAGGT
AATTAATATTATTATAAAAATATTTCCATTTTTTTATACTTTTATATAATCTTAAAATAAAACAA
ATGAAAAATATCATTTGAAAATAAGATACAAGATCAACAAATTCATATAAAAAAATTTCTCCTTA
CTCCAATAATAATGATTTATTAACATATTTTTAATAAGAAAAATTTTCATTCACTCACATGTGAG
TATGATAAAACCTAATAATAATAAAATTTTATTATTAAAATTAAAATTATATGTTTATTATTAAA
ATTAAAATTCTATAATAATAAATAAATTTATTATTT
Found at i:33725115 original size:3 final size:3
Alignment explanation
Indices: 33725107--33725142 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
33725097 TTTTACAGTC
33725107 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
33725143 GTTATTAGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:33726185 original size:32 final size:31
Alignment explanation
Indices: 33726112--33726173 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
33726102 CAGATGCATC
33726112 ATAAACAAAATCCTGCTCCCCAAAAAATAGT
1 ATAAACAAAATCCTGCTCCCCAAAAAATAGT
33726143 ATAAACAAAATCCTGCTCCCCAAAAAATAGT
1 ATAAACAAAATCCTGCTCCCCAAAAAATAGT
33726174 TGTATTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.26, G:0.06, T:0.19
Consensus pattern (31 bp):
ATAAACAAAATCCTGCTCCCCAAAAAATAGT
Done.