Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 121 of 132
Found at i:37054678 original size:17 final size:17
Alignment explanation
Indices: 37054629--37054678 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
37054619 TTTTTTCAAA
* *
37054629 ATAT-TTATTTATTTTG
1 ATATATTATTAATTTTT
*
37054645 ATATATT-TTAAAATTTT
1 ATATATTATT-AATTTTT
37054662 ATATATTATTAATTTTT
1 ATATATTATTAATTTTT
37054679 GTCAATAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
16 6 0.22
17 19 0.70
18 2 0.07
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
ATATATTATTAATTTTT
Found at i:37063103 original size:48 final size:48
Alignment explanation
Indices: 37063010--37063108 Score: 128
Period size: 48 Copynumber: 2.1 Consensus size: 48
37063000 ATTAAATATA
* * *
37063010 ATTTAATAAAAATAATAAATAATTTAATTATATTTTAACATAATTACT
1 ATTTAATAAAAATAATAAATAATTTAATAACATTTTAACACAATTACT
* * *
37063058 ATTTAAT-AAAATAATATATAATTTAATAACATTTTTAATACAATTATT
1 ATTTAATAAAAATAATAAATAATTTAATAACA-TTTTAACACAATTACT
37063106 ATT
1 ATT
37063109 GGTTGAATGG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
47 21 0.48
48 23 0.52
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (48 bp):
ATTTAATAAAAATAATAAATAATTTAATAACATTTTAACACAATTACT
Found at i:37070530 original size:17 final size:19
Alignment explanation
Indices: 37070499--37070538 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
37070489 ATTATTTGAA
37070499 TATTGTATAACTTTG-TTT
1 TATTGTATAACTTTGCTTT
*
37070517 TATTGT-TAATTTTGCTTT
1 TATTGTATAACTTTGCTTT
37070535 TATT
1 TATT
37070539 TTAGAGACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.20, C:0.05, G:0.10, T:0.65
Consensus pattern (19 bp):
TATTGTATAACTTTGCTTT
Found at i:37072610 original size:2 final size:2
Alignment explanation
Indices: 37072605--37072629 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37072595 AGATAAAAAA
37072605 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
37072630 ATTCTGAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:37075865 original size:14 final size:14
Alignment explanation
Indices: 37075846--37075885 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
37075836 TCGAATCAAA
37075846 TCGAGTGAAATTGT
1 TCGAGTGAAATTGT
*
37075860 TCGAGTGAGATTGT
1 TCGAGTGAAATTGT
*
37075874 TCGAGTTAAATT
1 TCGAGTGAAATT
37075886 AAAAAAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.28, C:0.07, G:0.28, T:0.38
Consensus pattern (14 bp):
TCGAGTGAAATTGT
Found at i:37076110 original size:21 final size:21
Alignment explanation
Indices: 37076084--37076131 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
37076074 AAATCTTAAC
*
37076084 TTTTTTAGAAAT-TTTTATAAT
1 TTTTTTAGAAATATTTT-GAAT
*
37076105 TTTTTTATAAATATTTTGAAT
1 TTTTTTAGAAATATTTTGAAT
37076126 TTTTTT
1 TTTTTT
37076132 GCACTTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (21 bp):
TTTTTTAGAAATATTTTGAAT
Found at i:37078771 original size:23 final size:23
Alignment explanation
Indices: 37078740--37078785 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
37078730 CAAATAAATA
* *
37078740 ATTTGATTTAAGTTTTTGAATTT
1 ATTTGATTTAAATTTTTAAATTT
*
37078763 ATTTTATTTAAATTTTTAAATTT
1 ATTTGATTTAAATTTTTAAATTT
37078786 GGATTTAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (23 bp):
ATTTGATTTAAATTTTTAAATTT
Found at i:37081615 original size:81 final size:81
Alignment explanation
Indices: 37081520--37081682 Score: 317
Period size: 81 Copynumber: 2.0 Consensus size: 81
37081510 GTGGCATCCA
*
37081520 TAGCATTAACATTATCCGGGACAGGTGCTGTACTTAGCTCCTTGTGACTTGTAGGTATCTTTGCT
1 TAGCATTAACATTATCCAGGACAGGTGCTGTACTTAGCTCCTTGTGACTTGTAGGTATCTTTGCT
37081585 TGTCATTGCACTTGCT
66 TGTCATTGCACTTGCT
37081601 TAGCATTAACATTATCCAGGACAGGTGCTGTACTTAGCTCCTTGTGACTTGTAGGTATCTTTGCT
1 TAGCATTAACATTATCCAGGACAGGTGCTGTACTTAGCTCCTTGTGACTTGTAGGTATCTTTGCT
37081666 TGTCATTGCACTTGCT
66 TGTCATTGCACTTGCT
37081682 T
1 T
37081683 TCTTTCTTTT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (81 bp):
TAGCATTAACATTATCCAGGACAGGTGCTGTACTTAGCTCCTTGTGACTTGTAGGTATCTTTGCT
TGTCATTGCACTTGCT
Found at i:37086876 original size:20 final size:21
Alignment explanation
Indices: 37086847--37086898 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
37086837 AAGAATTATA
*
37086847 TTATTATTTTGG-TGCTTTTT
1 TTATTATTTTGGTTGATTTTT
*
37086867 TTATTGTTTTGGTTGATTTTTT
1 TTATTATTTTGGTTGA-TTTTT
*
37086889 TTACTATTTT
1 TTATTATTTT
37086899 TGAGTTGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 11 0.42
21 2 0.08
22 13 0.50
ACGTcount: A:0.12, C:0.04, G:0.13, T:0.71
Consensus pattern (21 bp):
TTATTATTTTGGTTGATTTTT
Found at i:37086888 original size:21 final size:20
Alignment explanation
Indices: 37086847--37086919 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 20
37086837 AAGAATTATA
*
37086847 TTATTATTTTGGTGCTTTTT
1 TTATTATTTTGGTGATTTTT
*
37086867 TTATTGTTTTGGTTGATTTTTT
1 TTATTATTTTGG-TGA-TTTTT
*
37086889 TTACTATTTT--TGAGTTGTTT
1 TTATTATTTTGGTGA-TT-TTT
*
37086909 TTATTGTTTTG
1 TTATTATTTTG
37086920 ATTGTTATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
19 5 0.12
20 22 0.52
21 2 0.05
22 13 0.31
ACGTcount: A:0.11, C:0.03, G:0.16, T:0.70
Consensus pattern (20 bp):
TTATTATTTTGGTGATTTTT
Found at i:37086948 original size:23 final size:22
Alignment explanation
Indices: 37086922--37087009 Score: 72
Period size: 23 Copynumber: 3.9 Consensus size: 22
37086912 TTGTTTTGAT
*
37086922 TGTTATTTTCGTGTTATTTTTAC
1 TGTTATTTTC-TGTTATTTTTAA
* *
37086945 TGTTATTTT-TGTTGTTGTTTTAT
1 TGTTATTTTCTGTT-AT-TTTTAA
* *
37086968 TGCTATTTT-TGTTGTTTTTAA
1 TGTTATTTTCTGTTATTTTTAA
*
37086989 TGTTCTTTTACTGTTATTTTT
1 TGTTATTTT-CTGTTATTTTT
37087010 GTTGCTGTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
21 16 0.30
22 2 0.04
23 35 0.66
ACGTcount: A:0.11, C:0.06, G:0.14, T:0.69
Consensus pattern (22 bp):
TGTTATTTTCTGTTATTTTTAA
Found at i:37086977 original size:67 final size:67
Alignment explanation
Indices: 37086906--37087032 Score: 157
Period size: 67 Copynumber: 1.9 Consensus size: 67
37086896 TTTTGAGTTG
* * *
37086906 TTTTTATTGTTTTGATTGTTATTTT-CGTGTTATTTTTACTGTTATTTTTGTTGTTGTTTTATTG
1 TTTTTATTGTTTTGAATGTTATTTTAC-TGTTATTTTTACTGCTATTTTTGTTGTTATTTTATTG
37086970 CTA
65 CTA
* * * ** *
37086973 TTTTTGTTGTTTTTAATGTTCTTTTACTGTTATTTTTGTTGCTGTTTTTGTTGTTATTTT
1 TTTTTATTGTTTTGAATGTTATTTTACTGTTATTTTTACTGCTATTTTTGTTGTTATTTT
37087033 TGTTGTTTGG
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
67 49 0.98
68 1 0.02
ACGTcount: A:0.10, C:0.05, G:0.15, T:0.70
Consensus pattern (67 bp):
TTTTTATTGTTTTGAATGTTATTTTACTGTTATTTTTACTGCTATTTTTGTTGTTATTTTATTGC
TA
Found at i:37086986 original size:32 final size:31
Alignment explanation
Indices: 37086945--37087027 Score: 85
Period size: 32 Copynumber: 2.6 Consensus size: 31
37086935 TTATTTTTAC
* *
37086945 TGTTATTTTTGTTGTTGTTTTATTGCTATTTT
1 TGTTGTTTTT-TTGTTGTTTTACTGCTATTTT
* * *
37086977 TGTTGTTTTTAATGTTCTTTTACTGTTATTTT
1 TGTTGTTTTT-TTGTTGTTTTACTGCTATTTT
*
37087009 TGTTGCTGTTTTTGTTGTT
1 TGTTG-TTTTTTTGTTGTT
37087028 ATTTTTGTTG
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
32 37 0.90
33 4 0.10
ACGTcount: A:0.08, C:0.05, G:0.17, T:0.70
Consensus pattern (31 bp):
TGTTGTTTTTTTGTTGTTTTACTGCTATTTT
Found at i:37087038 original size:12 final size:12
Alignment explanation
Indices: 37086915--37087039 Score: 82
Period size: 12 Copynumber: 10.8 Consensus size: 12
37086905 GTTTTTATTG
37086915 TTTTGATTGTTAT
1 TTTTG-TTGTTAT
*
37086928 TTTCG-TGTTAT
1 TTTTGTTGTTAT
**
37086939 TTTTACTGTTAT
1 TTTTGTTGTTAT
*
37086951 TTTTGTTGTT-G
1 TTTTGTTGTTAT
* *
37086962 TTTTATTGCTAT
1 TTTTGTTGTTAT
37086974 TTTTGTTG---T
1 TTTTGTTGTTAT
** *
37086983 TTTTAATGTT-C
1 TTTTGTTGTTAT
**
37086994 TTTTACTGTTAT
1 TTTTGTTGTTAT
* *
37087006 TTTTGTTGCTGT
1 TTTTGTTGTTAT
37087018 TTTTGTTGTTAT
1 TTTTGTTGTTAT
37087030 TTTTGTTGTT
1 TTTTGTTGTT
37087040 TGGATGTTAC
Statistics
Matches: 86, Mismatches: 21, Indels: 11
0.73 0.18 0.09
Matches are distributed among these distances:
9 7 0.08
11 26 0.30
12 49 0.57
13 4 0.05
ACGTcount: A:0.10, C:0.05, G:0.16, T:0.70
Consensus pattern (12 bp):
TTTTGTTGTTAT
Found at i:37087047 original size:55 final size:56
Alignment explanation
Indices: 37086933--37087053 Score: 165
Period size: 55 Copynumber: 2.2 Consensus size: 56
37086923 GTTATTTTCG
* * *
37086933 TGTTATTTTTACTGTTATTTTTGTTGTTGTTTTATTGCTATTTTTGTTGTTTTTAA
1 TGTTACTTTTACTGTTATTTTTGTTGCTGTTTTATTGCTATTTTTGTTGTTTTGAA
* * *
37086989 TGTT-CTTTTACTGTTATTTTTGTTGCTGTTTTTGTTGTTATTTTTGTTG-TTTGGA
1 TGTTACTTTTACTGTTATTTTTGTTGCTG-TTTTATTGCTATTTTTGTTGTTTTGAA
37087044 TGTTACTTTT
1 TGTTACTTTT
37087054 TATGCGTTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
55 30 0.53
56 27 0.47
ACGTcount: A:0.10, C:0.05, G:0.17, T:0.69
Consensus pattern (56 bp):
TGTTACTTTTACTGTTATTTTTGTTGCTGTTTTATTGCTATTTTTGTTGTTTTGAA
Found at i:37087193 original size:20 final size:19
Alignment explanation
Indices: 37087164--37087203 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
37087154 ATCTTAATAT
*
37087164 AATTTTTTTAATGTATTTTA
1 AATTTATTTAATGT-TTTTA
37087184 AATTTATTTAATGTTTTTA
1 AATTTATTTAATGTTTTTA
37087203 A
1 A
37087204 GTGTATTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
AATTTATTTAATGTTTTTA
Found at i:37087210 original size:19 final size:20
Alignment explanation
Indices: 37087170--37087211 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
37087160 ATATAATTTT
*
37087170 TTTAATGTATTTTAAATTTA
1 TTTAATGTATTTTAAATGTA
*
37087190 TTTAATGT-TTTTAAGTGTA
1 TTTAATGTATTTTAAATGTA
37087209 TTT
1 TTT
37087212 GATATATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.62
Consensus pattern (20 bp):
TTTAATGTATTTTAAATGTA
Found at i:37087229 original size:29 final size:28
Alignment explanation
Indices: 37087160--37087232 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 28
37087150 AGCTATCTTA
*
37087160 ATATAATTTTTTTAATGTATTTTAAATTT
1 ATATAA-TTTTTTAATGTATTTGAAATTT
* *
37087189 ATTTAATGTTTTTAAGTGTATTTGATATATT
1 ATATAAT-TTTTTAA-TGTATTTGAAAT-TT
37087220 ATAT-ATTTTTTAA
1 ATATAATTTTTTAA
37087233 ATTTGTTGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
28 1 0.03
29 19 0.51
30 12 0.32
31 5 0.14
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (28 bp):
ATATAATTTTTTAATGTATTTGAAATTT
Found at i:37089462 original size:24 final size:24
Alignment explanation
Indices: 37089430--37089498 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
37089420 AAGGCCTGTA
*
37089430 TCAATTAAACTCTGTTTAATTGTT
1 TCAATTAAACTCTGTTTAATTATT
*
37089454 TCAATTAAACTCTGTTTATTTATT
1 TCAATTAAACTCTGTTTAATTATT
* *
37089478 TGAGTTAAACTCT-TATTAATT
1 TCAATTAAACTCTGT-TTAATT
37089499 TAGATTATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 1 0.03
24 38 0.97
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.51
Consensus pattern (24 bp):
TCAATTAAACTCTGTTTAATTATT
Found at i:37093625 original size:23 final size:22
Alignment explanation
Indices: 37093599--37093736 Score: 118
Period size: 23 Copynumber: 5.9 Consensus size: 22
37093589 TTACCGTTCA
*
37093599 GCACTGTGTGTGCTTACTGTTTC
1 GCACT-TGTGTGCCTACTGTTTC
37093622 GCACTTTGTGTGCCTACTGTTTC
1 GCAC-TTGTGTGCCTACTGTTTC
37093645 GCACTTCGTGTGCCTACTGATTT-
1 GCACTT-GTGTGCCTACTG-TTTC
* * *
37093668 GCGCTATGTGCGCCTACTGATT-
1 GCACT-TGTGTGCCTACTGTTTC
*
37093690 GCACTGTGTGTGCTTACTGTTTCCC
1 GCACT-TGTGTGCCTACTGTTT--C
*
37093715 TAGCACTTGTGTGCTTACTGTT
1 --GCACTTGTGTGCCTACTGTT
37093737 AAGTACTTCG
Statistics
Matches: 97, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
22 21 0.22
23 51 0.53
24 5 0.05
26 15 0.15
27 5 0.05
ACGTcount: A:0.11, C:0.25, G:0.24, T:0.41
Consensus pattern (22 bp):
GCACTTGTGTGCCTACTGTTTC
Found at i:37093683 original size:46 final size:45
Alignment explanation
Indices: 37093599--37093712 Score: 142
Period size: 46 Copynumber: 2.5 Consensus size: 45
37093589 TTACCGTTCA
* * *
37093599 GCACTGTGTGTGCTTACTGTTTCGCACTTTGTGTGCCTACTGTTT
1 GCACTGTGTGTGCTTACTGTTTCGCACTATGTGCGCCTACTGATT
* *
37093644 CGCACT-TCGTGTGCCTACTGATTT-GCGCTATGTGCGCCTACTGATT
1 -GCACTGT-GTGTGCTTACTG-TTTCGCACTATGTGCGCCTACTGATT
37093690 GCACTGTGTGTGCTTACTGTTTC
1 GCACTGTGTGTGCTTACTGTTTC
37093713 CCTAGCACTT
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
44 3 0.05
45 17 0.29
46 35 0.60
47 3 0.05
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.40
Consensus pattern (45 bp):
GCACTGTGTGTGCTTACTGTTTCGCACTATGTGCGCCTACTGATT
Found at i:37095082 original size:24 final size:24
Alignment explanation
Indices: 37095053--37095115 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
37095043 AGAAATAATC
*
37095053 TTTCAATTAAACTCTGTTTAATTG
1 TTTCAATTAAACTCTATTTAATTG
*
37095077 TTTCAATTAAACTCTATTTATTTG
1 TTTCAATTAAACTCTATTTAATTG
* *
37095101 TTTGAGTTAAACTCT
1 TTTCAATTAAACTCT
37095116 TATTAGTCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.51
Consensus pattern (24 bp):
TTTCAATTAAACTCTATTTAATTG
Found at i:37097467 original size:29 final size:29
Alignment explanation
Indices: 37097434--37097492 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
37097424 AGCTGATTTT
**
37097434 TGTTGGGCTTTAATTAGAAA-TTTTAAAAA
1 TGTTGGGAGTTAATTA-AAATTTTTAAAAA
37097463 TGTTGGGAGTTAATTAAAATTTTTAAAAA
1 TGTTGGGAGTTAATTAAAATTTTTAAAAA
37097492 T
1 T
37097493 CCCAAAGAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 3 0.11
29 24 0.89
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.42
Consensus pattern (29 bp):
TGTTGGGAGTTAATTAAAATTTTTAAAAA
Found at i:37098341 original size:76 final size:78
Alignment explanation
Indices: 37098253--37098399 Score: 192
Period size: 76 Copynumber: 1.9 Consensus size: 78
37098243 TTCCAAATTT
* * *
37098253 TAATTAAAAATTCATATATTACACAAGTCAAAATA-TTCATTTCACTATTTTGAATATG-TAAAT
1 TAATTAAAAATTCATATATTAAACAAGTCAAAA-AGTTCATTTCACCATTTTAAATATGTTAAAT
37098316 -TAAAAAAATATTA
65 GTAAAAAAATATTA
* * * * *
37098329 TAATTGAAAATTCATTTATTAAATAAGTCAAAAAGTTTATTTTACCATTTTAAATATGTTAAATG
1 TAATTAAAAATTCATATATTAAACAAGTCAAAAAGTTCATTTCACCATTTTAAATATGTTAAATG
37098394 TAAAAA
66 TAAAAA
37098400 TTGTTTTATA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
75 1 0.02
76 48 0.80
77 5 0.08
78 6 0.10
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.39
Consensus pattern (78 bp):
TAATTAAAAATTCATATATTAAACAAGTCAAAAAGTTCATTTCACCATTTTAAATATGTTAAATG
TAAAAAAATATTA
Found at i:37106811 original size:17 final size:18
Alignment explanation
Indices: 37106789--37106822 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37106779 AATTTTTTAA
37106789 AAATTAAT-AAATAATAT
1 AAATTAATAAAATAATAT
*
37106806 AAATTATTAAAATAATA
1 AAATTAATAAAATAATA
37106823 AAGATAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATTAATAAAATAATAT
Found at i:37121628 original size:27 final size:27
Alignment explanation
Indices: 37121598--37121662 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
37121588 ATATTTTTAG
37121598 AAATTTTTATAACTTTTT-TAAA-AATAT
1 AAATTTTTA-AA-TTTTTATAAATAATAT
* *
37121625 AAATTTTGAAATTTTTATAAATAATTT
1 AAATTTTTAAATTTTTATAAATAATAT
37121652 AAATTTTTAAA
1 AAATTTTTAAA
37121663 ATTATTTTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 5 0.15
26 6 0.18
27 22 0.67
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (27 bp):
AAATTTTTAAATTTTTATAAATAATAT
Found at i:37121645 original size:18 final size:17
Alignment explanation
Indices: 37121622--37121665 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
37121612 TTTTTAAAAA
37121622 TATAAATTTTGAAATTTT
1 TATAAATTTT-AAATTTT
37121640 TATAAATAATTTAAATTTT
1 TATAAAT--TTTAAATTTT
37121659 TA-AAATT
1 TATAAATT
37121666 ATTTTAGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
16 1 0.04
18 11 0.46
19 9 0.38
20 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TATAAATTTTAAATTTT
Found at i:37121671 original size:19 final size:19
Alignment explanation
Indices: 37121622--37121678 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
37121612 TTTTTAAAAA
*
37121622 TATAAAT-TTTGAAATTTT
1 TATAAATATTTTAAATTTT
*
37121640 TATAAATAATTTAAATTTT
1 TATAAATATTTTAAATTTT
*
37121659 TA-AAATTATTTTAGATTTT
1 TATAAA-TATTTTAAATTTT
37121678 T
1 T
37121679 TTTTTGTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 10 0.30
19 23 0.70
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (19 bp):
TATAAATATTTTAAATTTT
Found at i:37130630 original size:212 final size:211
Alignment explanation
Indices: 37130247--37130677 Score: 781
Period size: 212 Copynumber: 2.0 Consensus size: 211
37130237 CACCATCACC
* *
37130247 CCTAATAAGTGAAAATGTAATTGGGGTGCTCCAACTACTTCCAATTTAATGGGACCCATCAATTA
1 CCTAGTAAGTGAAAATGTAATTGGGGTGCTCCAACTACTTCCAATTTAATGGGACCCATCAACTA
*
37130312 AAGTGGTTACGTAAACATATCACATTGTATAATTACAAGCAATTATACTCAAATTCAATTACTAG
66 AAGTGGTTACGCAAACATATCACATTGTATAATTACAAGCAATTATACTCAAATTCAATTACTAG
* * *
37130377 GTGACTTTTCGAACACTATCTTTTTGGTTTAAGGGCTTGTTTGGACTGCACAAAGTAATCGAATG
131 GTGACTTTTCGAACACTATCTTATTGGTTTAAGGACTTGTTTGGACTGCACAAAGTAATCAAATG
37130442 AAAGTGTAGTTACTAT
196 AAAGTGTAGTTACTAT
* *
37130458 CCTAGTAAGTGGAAAGTGTAATTGGGGTGCTCCAACTACTTCCAGTTTAATGGGACCCATCAACT
1 CCTAGTAAGT-GAAAATGTAATTGGGGTGCTCCAACTACTTCCAATTTAATGGGACCCATCAACT
37130523 AAAGTGGTTACGCAAACATATCACATTGTATAATTACAAGCAATTATACTCAAATTCAATTACTA
65 AAAGTGGTTACGCAAACATATCACATTGTATAATTACAAGCAATTATACTCAAATTCAATTACTA
37130588 GGTGACTTTTCGAACACTATCTTATTGGTTTAAGGACTTGTTTGGACTGCACAAAGTAATCAAAT
130 GGTGACTTTTCGAACACTATCTTATTGGTTTAAGGACTTGTTTGGACTGCACAAAGTAATCAAAT
37130653 GAAAGTGTAGTTACTAT
195 GAAAGTGTAGTTACTAT
37130670 CCTAGTAA
1 CCTAGTAA
37130678 TTACACTCTC
Statistics
Matches: 211, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
211 9 0.04
212 202 0.96
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (211 bp):
CCTAGTAAGTGAAAATGTAATTGGGGTGCTCCAACTACTTCCAATTTAATGGGACCCATCAACTA
AAGTGGTTACGCAAACATATCACATTGTATAATTACAAGCAATTATACTCAAATTCAATTACTAG
GTGACTTTTCGAACACTATCTTATTGGTTTAAGGACTTGTTTGGACTGCACAAAGTAATCAAATG
AAAGTGTAGTTACTAT
Found at i:37131532 original size:22 final size:24
Alignment explanation
Indices: 37131493--37131537 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
37131483 AATTTCTCTA
*
37131493 TTTTAATTTTATATAATTTAATTC
1 TTTTAATTTTATATAATTAAATTC
37131517 TTTT-ATTTT-TATAATTAAATT
1 TTTTAATTTTATATAATTAAATT
37131538 AGTTAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 11 0.55
23 5 0.25
24 4 0.20
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (24 bp):
TTTTAATTTTATATAATTAAATTC
Found at i:37131931 original size:31 final size:30
Alignment explanation
Indices: 37131904--37131971 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
37131894 TATGATTTAA
*
37131904 TATATAGTTGTATACATG-AATTTTGATTT
1 TATATAATTGTATACATGAAATTTTGATTT
* * *
37131933 TGTATAATTTTATACTTGAAATTTTGATTT
1 TATATAATTGTATACATGAAATTTTGATTT
* *
37131963 GATCTAATT
1 TATATAATT
37131972 CTTGTAAATT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.31, C:0.04, G:0.12, T:0.53
Consensus pattern (30 bp):
TATATAATTGTATACATGAAATTTTGATTT
Found at i:37132123 original size:31 final size:32
Alignment explanation
Indices: 37132085--37132146 Score: 83
Period size: 31 Copynumber: 1.9 Consensus size: 32
37132075 CTTTCTTTAA
37132085 ATATATATGATTAAATCCA-AATT-AAATTTTCAG
1 ATATATAT--TTAAAT-CATAATTAAAATTTTCAG
37132118 ATATATATTTAAATCATAATTAAAATTTT
1 ATATATATTTAAATCATAATTAAAATTTT
37132147 ATTTGGCCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
30 2 0.07
31 10 0.37
32 7 0.26
33 8 0.30
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (32 bp):
ATATATATTTAAATCATAATTAAAATTTTCAG
Found at i:37135527 original size:19 final size:17
Alignment explanation
Indices: 37135486--37135535 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 17
37135476 CATTATAAAA
37135486 GAAAAAGAAAAAAATAG
1 GAAAAAGAAAAAAATAG
*
37135503 GAAAAAGAAAGAGAAATAT
1 GAAAAAGAAA-A-AAATAG
*
37135522 GTAAAAGAAAAAAA
1 GAAAAAGAAAAAAA
37135536 AATAACAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.45
18 2 0.07
19 14 0.48
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (17 bp):
GAAAAAGAAAAAAATAG
Found at i:37139340 original size:29 final size:28
Alignment explanation
Indices: 37139308--37139367 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
37139298 TATACTTTTT
*
37139308 AATAA-TTTTAATGATTTTTAATTTTTAAA
1 AATAATTTTTAA--ATTTTTAAATTTTAAA
37139337 AATAATTTTTTAAATTTTTAAATTTTAAA
1 AATAA-TTTTTAAATTTTTAAATTTTAAA
37139366 AA
1 AA
37139368 ATTAAATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 22 0.79
31 6 0.21
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (28 bp):
AATAATTTTTAAATTTTTAAATTTTAAA
Found at i:37141706 original size:6 final size:6
Alignment explanation
Indices: 37141695--37141720 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
37141685 ATAGATTGAA
37141695 TTAATT TTAATT TTAATT TTAATT TT
1 TTAATT TTAATT TTAATT TTAATT TT
37141721 TTTAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTAATT
Found at i:37149140 original size:31 final size:31
Alignment explanation
Indices: 37149081--37149140 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
37149071 TTTTTTTTTG
*
37149081 AAAAATTTAATTAAATCCTTCAAGAATTTAA
1 AAAAATTTAATTAAATCCTTCAACAATTTAA
* *
37149112 AAAAATTCTCATTAAA-CCTTCTACAATTT
1 AAAAATT-TAATTAAATCCTTCAACAATTT
37149141 TTAAAACTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 18 0.72
32 7 0.28
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.37
Consensus pattern (31 bp):
AAAAATTTAATTAAATCCTTCAACAATTTAA
Found at i:37151952 original size:22 final size:21
Alignment explanation
Indices: 37151916--37151974 Score: 59
Period size: 24 Copynumber: 2.7 Consensus size: 21
37151906 GTTCGATTTT
*
37151916 ATATTAATA-AAAAAATA-ATA
1 ATATTAATATAAAATATATA-A
37151936 ATAATTTAATTATAAAATATATAA
1 AT-A-TTAA-TATAAAATATATAA
37151960 ATATTAATATAAAAT
1 ATATTAATATAAAAT
37151975 TATTTATATT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
20 2 0.06
21 9 0.27
22 8 0.24
23 3 0.09
24 10 0.30
25 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
ATATTAATATAAAATATATAA
Found at i:37160286 original size:26 final size:25
Alignment explanation
Indices: 37160226--37160286 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
37160216 TTTACTTTCA
* *
37160226 ATTTAATCATTTATCTTATTTATTT
1 ATTTATTCATTTATCGTATTTATTT
* *
37160251 ATTTTTTTCATTTATACGTCTTTATTT
1 A-TTTATTCATTTAT-CGTATTTATTT
37160278 ATTTATTCA
1 ATTTATTCA
37160287 ACCACATGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.03
26 18 0.62
27 10 0.34
ACGTcount: A:0.25, C:0.10, G:0.02, T:0.64
Consensus pattern (25 bp):
ATTTATTCATTTATCGTATTTATTT
Found at i:37162521 original size:35 final size:35
Alignment explanation
Indices: 37162460--37162528 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
37162450 ATGTCAATGA
* * *
37162460 ATAAATAAATTTTAAAATATTGAAAAATTAAAATT
1 ATAAATAAATTTAAAAAAATTGAAAAAATAAAATT
*
37162495 ATAAA-AAATTTCAAAAAAATTTAAAAAATAAAAT
1 ATAAATAAATTT-AAAAAAATTGAAAAAATAAAAT
37162529 AAGATATACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 6 0.21
35 23 0.79
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (35 bp):
ATAAATAAATTTAAAAAAATTGAAAAAATAAAATT
Found at i:37171266 original size:14 final size:14
Alignment explanation
Indices: 37171243--37171277 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
37171233 ATATATTAGT
37171243 TAATAATAATAAAA
1 TAATAATAATAAAA
* *
37171257 TAATACTAATTAAA
1 TAATAATAATAAAA
37171271 TAATAAT
1 TAATAAT
37171278 TTATACAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (14 bp):
TAATAATAATAAAA
Found at i:37173103 original size:7 final size:7
Alignment explanation
Indices: 37173081--37173115 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
37173071 ATTGAAATTT
*
37173081 TATAAAT
1 TATAAAA
*
37173088 TAAAAAA
1 TATAAAA
37173095 TATAAAA
1 TATAAAA
37173102 TATAAAA
1 TATAAAA
37173109 TATAAAA
1 TATAAAA
37173116 ATATTTAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TATAAAA
Found at i:37191347 original size:27 final size:27
Alignment explanation
Indices: 37191299--37191356 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
37191289 GCCGGTGCAG
* * *
37191299 CAGCAGCGGCCACTCCAGGGTTAAACC
1 CAGCAGCAGCAACACCAGGGTTAAACC
* *
37191326 CAGCAGCAGCAACACCATGGTTGAACC
1 CAGCAGCAGCAACACCAGGGTTAAACC
37191353 CAGC
1 CAGC
37191357 TCCAGCAGGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.36, G:0.24, T:0.10
Consensus pattern (27 bp):
CAGCAGCAGCAACACCAGGGTTAAACC
Found at i:37192288 original size:3 final size:3
Alignment explanation
Indices: 37192282--37192307 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
37192272 GTCATCATCT
37192282 TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TC
37192308 TTCAAATTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (3 bp):
TCC
Found at i:37194894 original size:69 final size:70
Alignment explanation
Indices: 37194821--37194958 Score: 156
Period size: 70 Copynumber: 2.0 Consensus size: 70
37194811 TTTGGAATGG
* * *
37194821 TGTTGTCGTGTAGG-TTTTTACTGTATT-TTGGACTTTTGCTTATGTTTTT-TTATAATCTTGTT
1 TGTTGTCAT-TAGGATTTGTACTGT-TTATTGAACTTTTGCTTATGTTTTTATTATAATCTTGTT
37194883 GTGTTAT
64 GTGTTAT
* * ** *
37194890 TGTTGTTATTTGGATTTGTGTTGTTTACTTGAACTTTTGCTTATTTTTTTATTATAATCTTGTTG
1 TGTTGTCATTAGGATTTGTACTGTTTA-TTGAACTTTTGCTTATGTTTTTATTATAATCTTGTTG
37194955 TGTT
65 TGTT
37194959 GGCATTGTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
68 5 0.09
69 14 0.25
70 20 0.35
71 18 0.32
ACGTcount: A:0.14, C:0.07, G:0.19, T:0.61
Consensus pattern (70 bp):
TGTTGTCATTAGGATTTGTACTGTTTATTGAACTTTTGCTTATGTTTTTATTATAATCTTGTTGT
GTTAT
Found at i:37200452 original size:51 final size:51
Alignment explanation
Indices: 37200392--37200673 Score: 323
Period size: 51 Copynumber: 5.5 Consensus size: 51
37200382 TGAAAATGTT
* * *
37200392 CGATGACTAAGTGTCATCATGAGGAAAAGAATCCTTTACGGATTAAAGGTC
1 CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTC
**
37200443 CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTAAAGATTAAAGGTC
1 CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTC
* * *
37200494 CAATAACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGAATTAAAGGTC
1 CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTC
* * * * * *
37200545 CAATGATTAAGTGTCATCGTGAGTAAATGAATCCATGATGGATTAAGGGTC
1 CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTC
** * * * * **
37200596 CGATGACTTTGTGCCATCGTGAGTATATGAATTCCTATATGGAACAAGAGGTC
1 CGATGACTAAGTGTCATCGTGAGTAAATGAA-TCCTTTACGGATTAA-AGGTC
*
37200649 CGATGACTATA-TGTCATCGGGAGTA
1 CGATGACTA-AGTGTCATCGTGAGTA
37200674 TGAAATGAAA
Statistics
Matches: 195, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
51 161 0.83
52 10 0.05
53 24 0.12
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (51 bp):
CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTC
Found at i:37203216 original size:20 final size:21
Alignment explanation
Indices: 37203188--37203238 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
37203178 ATAAAATTGA
37203188 ATTAGAATATATAAACTAT-ATT
1 ATTA-AATATATAAA-TATAATT
*
37203210 -TTAAATATTTAAATATAATT
1 ATTAAATATATAAATATAATT
37203230 ATTAAATAT
1 ATTAAATAT
37203239 TTATATTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 3 0.12
20 12 0.46
21 11 0.42
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
ATTAAATATATAAATATAATT
Found at i:37203236 original size:21 final size:21
Alignment explanation
Indices: 37203188--37203241 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
37203178 ATAAAATTGA
*
37203188 ATTAGAATATATAAACTATATT
1 ATTA-AATATTTAAACTATATT
37203210 -TTAAATATTTAAA-TATAATT
1 ATTAAATATTTAAACTAT-ATT
37203230 ATTAAATATTTA
1 ATTAAATATTTA
37203242 TATTTAGATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 3 0.10
20 12 0.41
21 14 0.48
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (21 bp):
ATTAAATATTTAAACTATATT
Found at i:37204767 original size:13 final size:12
Alignment explanation
Indices: 37204743--37204775 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
37204733 CACCTAGCAA
37204743 CCATACATTGCT
1 CCATACATTGCT
37204755 CCATACTATTGCT
1 CCATAC-ATTGCT
37204768 CCA-ACATT
1 CCATACATT
37204776 TTCATTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 3 0.15
12 8 0.40
13 9 0.45
ACGTcount: A:0.27, C:0.33, G:0.06, T:0.33
Consensus pattern (12 bp):
CCATACATTGCT
Found at i:37205995 original size:20 final size:21
Alignment explanation
Indices: 37205951--37205995 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 21
37205941 AATTATGAAG
*
37205951 GTTTAAAAAAATTTACCTTAA
1 GTTTAAAAAAATTTACCATAA
37205972 -TTT-AAAAAATATTA-CATAA
1 GTTTAAAAAAAT-TTACCATAA
37205991 GTTTA
1 GTTTA
37205996 TTTTGATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 6
0.74 0.04 0.22
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (21 bp):
GTTTAAAAAAATTTACCATAA
Found at i:37210524 original size:27 final size:28
Alignment explanation
Indices: 37210494--37210548 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
37210484 GCCGGTGCAG
* *
37210494 CAGCAGCAGCCACTCCAGGGTT-AAACC
1 CAGCAGCAGCAACACCAGGGTTGAAACC
*
37210521 CAGCAGCAGCAACACCATGGTTGAAACC
1 CAGCAGCAGCAACACCAGGGTTGAAACC
37210549 AGCTCCAGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.33, C:0.35, G:0.22, T:0.11
Consensus pattern (28 bp):
CAGCAGCAGCAACACCAGGGTTGAAACC
Found at i:37211486 original size:3 final size:3
Alignment explanation
Indices: 37211480--37211508 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
37211470 ATCATCATCT
37211480 TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
37211509 TTCAAATTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (3 bp):
TCC
Found at i:37219655 original size:75 final size:75
Alignment explanation
Indices: 37219532--37219683 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
37219522 TTCAGAACCA
37219532 GACCGGACCATCTGGTCGGACCTGGAATTGGCTTGGGTACCGGTCTAGAACAAGGGGTTGGACCG
1 GACCGGACCATCTGGTCGGACCTGGAATTGGCTTGGGTACCGGTCTAGAACAAGGGGTTGGACCG
37219597 GTTGACCCAC
66 GTTGACCCAC
37219607 GACCGGACCATCTGGTCGGACCTGGAATTGGCTTGGGTACCGGTCTAGAACAAGGGGTTGGACCG
1 GACCGGACCATCTGGTCGGACCTGGAATTGGCTTGGGTACCGGTCTAGAACAAGGGGTTGGACCG
37219672 GTTGACCCAC
66 GTTGACCCAC
37219682 GA
1 GA
37219684 ACTGGTTGAA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.20, C:0.25, G:0.35, T:0.20
Consensus pattern (75 bp):
GACCGGACCATCTGGTCGGACCTGGAATTGGCTTGGGTACCGGTCTAGAACAAGGGGTTGGACCG
GTTGACCCAC
Found at i:37226289 original size:74 final size:74
Alignment explanation
Indices: 37226168--37226305 Score: 222
Period size: 74 Copynumber: 1.9 Consensus size: 74
37226158 AGGAAGATGA
* * * * * *
37226168 CCGCTTCATTTTTTGACCCACTTCTCTGTATCTTATCAGGAAGATGGGGTTTGAAGTTTCACTTA
1 CCGCTTCATTATTTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACTTA
37226233 TATTTAGCT
66 TATTTAGCT
37226242 CCGCTTCATTATTTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACTT
1 CCGCTTCATTATTTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACTT
37226306 CACTCCACTG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 58 1.00
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (74 bp):
CCGCTTCATTATTTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACTTA
TATTTAGCT
Found at i:37226386 original size:114 final size:114
Alignment explanation
Indices: 37226254--37226813 Score: 615
Period size: 114 Copynumber: 4.9 Consensus size: 114
37226244 GCTTCATTAT
37226254 TTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACTTCACTCCACTGTAT
1 TTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACTTCACTCCACTGTAT
* * *
37226319 CCTCAAGGAAGTTGAGCTTGGCTTCGTTGTTCTGATTCAACACACTATA
66 CCTCAAGGAAGTTGAGCTCGGCTTCGTTATTTTGATTCAACACACTATA
* * * * *
37226368 TTGACCCACTTCTTTGTACCTCACCAGGAAGATGGGGTTTGAACTTTTAC-TCTACTCCACTGTA
1 TTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACTTC-ACTCCACTGTA
* * * *
37226432 TCCTC-AGAGACGTTGAGCTCAGCTTCATTATTTTGATTCAACACACTATT
65 TCCTCAAG-GAAGTTGAGCTCGGCTTCGTTATTTTGATTCAACACACTATA
* * * * * *
37226482 TTGAGCCACTTCACTGTACCTCACCAAGAAGATGAGATTTGAAGTCTCACTCCACTCTACTGTAT
1 TTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACTTCACTCCACTGTAT
* * * * **
37226547 CCTCAGGGAAGTTGAGTTCGGCATCGTTGTTTTGATTCAACATGCT-TA
66 CCTCAAGGAAGTTGAGCTCGGCTTCGTTATTTTGATTCAACACACTATA
* * *
37226595 TTGACCCACTTCTCTGTATCTCACTAAGAAGATGGGATTTGAAGTTTCACTCCACTCCACTCTAC
1 TTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACT----T-CACTCCAC
* * * * * * *
37226660 TATATCCTCAGGGACGTTCAGCTCGGCTTCGTTATTTTGATTCAACATACTGTT
61 TGTATCCTCAAGGAAGTTGAGCTCGGCTTCGTTATTTTGATTCAACACACTATA
* * * * *
37226714 TTGACCCACTTCTCTGTACCTCACTAGGAAGATGGGATTTGAAGTCTCAC-CCTACTACACTGTA
1 TTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACTTC-ACTCCACTGTA
* ** * * *
37226778 TCCTCAGGGGCGTTGAGCCCTGCTTCATTATTTTGA
65 TCCTCAAGGAAGTTGAGCTCGGCTTCGTTATTTTGA
37226814 CCACTTCTTT
Statistics
Matches: 375, Mismatches: 60, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
113 51 0.14
114 222 0.59
115 2 0.01
118 52 0.14
119 48 0.13
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (114 bp):
TTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACTTCACTCCACTGTAT
CCTCAAGGAAGTTGAGCTCGGCTTCGTTATTTTGATTCAACACACTATA
Found at i:37226747 original size:232 final size:227
Alignment explanation
Indices: 37226253--37226795 Score: 714
Period size: 232 Copynumber: 2.4 Consensus size: 227
37226243 CGCTTCATTA
* *
37226253 TTTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTTTCACTTCACTCCACTGTA
1 TTTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTCTCACTCCACT-CACTGTA
* * *
37226318 TCCTCAAGGAAGTTGAGCTTGGCTTCGTTGTTCTGATTCAACACACTATATTGACCCACTTCTTT
65 TCCTCAGGGAAGTTGAGCTTGGCATCGTTGTTCTGATTCAACACACTATATTGACCCACTTCTCT
* * * * *
37226383 GTACCTCACCAGGAAGATGGGGTTTGAACTTTTACTCTACTCCACTGTATCCTCAGAGACGTTGA
130 GTACCTCACCAAGAAGATGGGATTTGAACTTTTACTCCACTCCACTATATCCTCAGAGACGTTCA
37226448 GCTCAGCTTCATTATTTTGATTCAACACACTAT
195 GCTCAGCTTCATTATTTTGATTCAACACACTAT
* * *
37226481 TTTGAGCCACTTCACTGTACCTCACCAAGAAGATGAGATTTGAAGTCTCACTCCACTCTACTGTA
1 TTTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTCTCACTCCACTC-ACTGTA
* **
37226546 TCCTCAGGGAAGTTGAG-TTCGGCATCGTTGTTTTGATTCAACATGCT-TATTGACCCACTTCTC
65 TCCTCAGGGAAGTTGAGCTT-GGCATCGTTGTTCTGATTCAACACACTATATTGACCCACTTCTC
* * * * *
37226609 TGTATCTCACTAAGAAGATGGGATTTGAAGTTTCACTCCACTCCACTCTACTATATCCTCAGGGA
129 TGTACCTCACCAAGAAGATGGGATTTGAACTTT---T--ACTCCACTCCACTATATCCTCAGAGA
* * * *
37226674 CGTTCAGCTCGGCTTCGTTATTTTGATTCAACATACTGT
189 CGTTCAGCTCAGCTTCATTATTTTGATTCAACACACTAT
* *
37226713 TTTGACCCACTTCTCTGTACCTCACTAGGAAGATGGGATTTGAAGTCTCAC-CCTACTACACTGT
1 TTTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTCTCACTCC-ACT-CACTGT
**
37226777 ATCCTCAGGGGCGTTGAGC
64 ATCCTCAGGGAAGTTGAGC
37226796 CCTGCTTCAT
Statistics
Matches: 273, Mismatches: 32, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
227 46 0.17
228 97 0.36
230 1 0.00
231 2 0.01
232 126 0.46
233 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.33
Consensus pattern (227 bp):
TTTGACCCACTTCTCTGTACCTCACCAAGAAGATGGGATTTGAAGTCTCACTCCACTCACTGTAT
CCTCAGGGAAGTTGAGCTTGGCATCGTTGTTCTGATTCAACACACTATATTGACCCACTTCTCTG
TACCTCACCAAGAAGATGGGATTTGAACTTTTACTCCACTCCACTATATCCTCAGAGACGTTCAG
CTCAGCTTCATTATTTTGATTCAACACACTAT
Found at i:37226887 original size:95 final size:95
Alignment explanation
Indices: 37226712--37226910 Score: 274
Period size: 95 Copynumber: 2.1 Consensus size: 95
37226702 CAACATACTG
* *
37226712 TTTTGACCCACTTCTCTGTACCTCACTAGGAAGATGGGATTTGAAGTCTCACCCTACTACACTGT
1 TTTTGA-CCACTTCTCTGTACCTCACTAGGAAGATAGGATTTGAAGTCTCACCCTACTACACCGT
* *
37226777 ATCCTCAGGGGCGTTGAGCCCTGCTTCATTA
65 ATCCTCAGGGACGTTGAGCCCTACTTCATTA
* * * ** *
37226808 TTTTGACCACTTCTTTGTACCTTACTAGGAAGATAGGATTTGAAGTCTTATTCTACTCCACCGTA
1 TTTTGACCACTTCTCTGTACCTCACTAGGAAGATAGGATTTGAAGTCTCACCCTACTACACCGT-
*
37226873 AT-CTCAGGGACGTTGAGCCCTACTTCGTTA
65 ATCCTCAGGGACGTTGAGCCCTACTTCATTA
37226903 TTTTGACC
1 TTTTGACC
37226911 CGACCTTCTG
Statistics
Matches: 91, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
95 83 0.91
96 8 0.09
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.34
Consensus pattern (95 bp):
TTTTGACCACTTCTCTGTACCTCACTAGGAAGATAGGATTTGAAGTCTCACCCTACTACACCGTA
TCCTCAGGGACGTTGAGCCCTACTTCATTA
Found at i:37227165 original size:42 final size:42
Alignment explanation
Indices: 37227080--37227203 Score: 126
Period size: 42 Copynumber: 3.0 Consensus size: 42
37227070 TAGGTATGTA
* * *
37227080 AGATTCACCTTTGCAACTTCAATCTAGC-CCTTTACATCTTTG
1 AGATTCACCTTTGCAGCTTCAATCT-GCTTCTCTACATCTTTG
* *
37227122 AGATTCACCTTTACGGCTTCAATCTGCTTCTCTACAGTC-TTG
1 AGATTCACCTTTGCAGCTTCAATCTGCTTCTCTACA-TCTTTG
** * * *
37227164 AGATTTGCCTTTGCAGCTTCAATATGCTTTTCTTCATCTT
1 AGATTCACCTTTGCAGCTTCAATCTGCTTCTCTACATCTT
37227204 CGGGGTATAA
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
41 4 0.06
42 61 0.91
43 2 0.03
ACGTcount: A:0.20, C:0.27, G:0.12, T:0.41
Consensus pattern (42 bp):
AGATTCACCTTTGCAGCTTCAATCTGCTTCTCTACATCTTTG
Found at i:37227388 original size:49 final size:49
Alignment explanation
Indices: 37227319--37227588 Score: 201
Period size: 49 Copynumber: 5.5 Consensus size: 49
37227309 ACTAGATCTG
* * * * *
37227319 CCGTTGTGGCCTCGATCTTTCCCATCACATCTGTAAGGTACCAGGTTCA
1 CCGTTGCGGCCTCAACCTTTCCCATCACATCTCTAAGGTACCAGGTTTA
* * * * * * * *
37227368 CCATTGCGGTCTCAACCTTTCCCTTCATAT-TTTCATGGTACCAGATTTG
1 CCGTTGCGGCCTCAACCTTTCCCATCACATCTCT-AAGGTACCAGGTTTA
* * *
37227417 CCATTGTGGCCTCAATCCTTT-CCATCACATCTTCTAAGGTA-TAGGGTTTA
1 CCGTTGCGGCCTCAA-CCTTTCCCATCACATC-TCTAAGGTACCA-GGTTTA
* * * * *
37227467 CCGTTGCGGCCTCAATCTTTCCCTTCATATCT-TCATGGTACCAGATTTA
1 CCGTTGCGGCCTCAACCTTTCCCATCACATCTCT-AAGGTACCAGGTTTA
* * * *
37227516 CTGTTGCGGCCTCAATCC-TTCCTATCACATATTCTAAGGTA-CAGGGTTCA
1 CCGTTGCGGCCTCAA-CCTTTCCCATCACAT-CTCTAAGGTACCA-GGTTTA
37227566 CCGTTGCGGCCTCAACCTTTCCC
1 CCGTTGCGGCCTCAACCTTTCCC
37227589 TTTATTTTCA
Statistics
Matches: 168, Mismatches: 40, Indels: 25
0.72 0.17 0.11
Matches are distributed among these distances:
48 3 0.02
49 97 0.58
50 65 0.39
51 3 0.02
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.34
Consensus pattern (49 bp):
CCGTTGCGGCCTCAACCTTTCCCATCACATCTCTAAGGTACCAGGTTTA
Found at i:37227438 original size:99 final size:99
Alignment explanation
Indices: 37227263--37227883 Score: 661
Period size: 99 Copynumber: 6.3 Consensus size: 99
37227253 TAGGGTATAA
* * * *
37227263 GGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTTATATTTTCATGGTACTAGATCTGCCGTTGTGG
1 GGTTCACCGTTGCGGCCTCAACCTTTCCC-TTCATATTTTCATGGTACCAGATTTGCCGTTGTGG
* *
37227328 CCTCGATCTTTCCCATCACATC-TGTAAGGTACCA-
65 CCTCAATCTTTCCCATCACATCTTCTAAGGTA-CAG
* * *
37227362 GGTTCACCATTGCGGTCTCAACCTTTCCCTTCATATTTTCATGGTACCAGATTTGCCATTGTGGC
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATTTTCATGGTACCAGATTTGCCGTTGTGGC
*
37227427 CTCAATCCTTT-CCATCACATCTTCTAAGGTATAG
66 CTCAAT-CTTTCCCATCACATCTTCTAAGGTACAG
* * * * * *
37227461 GGTTTACCGTTGCGGCCTCAATCTTTCCCTTCATATCTTCATGGTACCAGATTTACTGTTGCGGC
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATTTTCATGGTACCAGATTTGCCGTTGTGGC
* * *
37227526 CTCAATCCTTCCTATCACATATTCTAAGGTACAG
66 CTCAATCTTTCCCATCACATCTTCTAAGGTACAG
* * **
37227560 GGTTCACCGTTGCGGCCTCAACCTTTCCCTT--TATTTTCATGGTACC-GAATTCGTCGTTGCAG
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATTTTCATGGTACCAG-ATTTGCCGTTGTGG
* * * * *
37227622 CCTCAATCATTCTCATAACATCTTTTAAGGTATAG
65 CCTCAATCTTTCCCATCACATCTTCTAAGGTACAG
* * * * * *
37227657 GGTTCGCCGTTGCGACATCAACCTTTCCCTTCATATCTTCATGGTACTAGATTTGTCGTTGTGGC
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATTTTCATGGTACCAGATTTGCCGTTGTGGC
* *
37227722 TTCAATCATTCCCATCACATCTTCTAAGGTACAG
66 CTCAATCTTTCCCATCACATCTTCTAAGGTACAG
**** * * *
37227756 GGTTTGTTGTTGCGGCATTAACCTTTCCCTT--TA-TTTCTATGGTACC-GAATTTACCGTTGTG
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATTTTC-ATGGTACCAG-ATTTGCCGTTGTG
* *
37227817 GCTTCAATCCTTT-CCATCACATCTTCTAAGGTATAG
64 GCCTCAAT-CTTTCCCATCACATCTTCTAAGGTACAG
** * *
37227853 GGTTTGCTGTTGCAGCCTCAACCTTTCCCTT
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCTT
37227884 TATTTCTGTA
Statistics
Matches: 445, Mismatches: 66, Indels: 24
0.83 0.12 0.04
Matches are distributed among these distances:
96 5 0.01
97 156 0.35
98 54 0.12
99 229 0.51
100 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.37
Consensus pattern (99 bp):
GGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATTTTCATGGTACCAGATTTGCCGTTGTGGC
CTCAATCTTTCCCATCACATCTTCTAAGGTACAG
Found at i:37227685 original size:196 final size:194
Alignment explanation
Indices: 37227256--37227883 Score: 735
Period size: 196 Copynumber: 3.2 Consensus size: 194
37227246 ATGTTTTTAG
* * * * * *
37227256 GGTATAAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTTATATTTTCATGGTACTAGATCTGCC
1 GGTATAGGGTTCGCCGTTGCGACCTCAACCTTTCCC-TTCATATCTTCATGGTACTAGAT-TTCT
* * * * * *
37227321 GTTGTGGCCTCGATCTTTCCCATCACATCTGTAAGGTACCA-GGTTCACCATTGCGGTCTCAACC
64 GTTGTGGCCTCAATCATTCCCATCACATTTCTAAGGTA-CAGGGTTCACCGTTGCGGCCTCAACC
*
37227385 TTTCCCTTCATATTTTCATGGTACC-AGATTTGCCATTGTGGCCTCAATCCTTTCCATCACATCT
128 TTTCCCTT--TATTTTCATGGTACCGA-ATTTGCCGTTGTGGCCTCAATCCTTTCCATCACATCT
37227449 TCTAA
190 TCTAA
** * * *
37227454 GGTATAGGGTTTACCGTTGCGGCCTCAATCTTTCCCTTCATATCTTCATGGTACCAGATTTACTG
1 GGTATAGGGTTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATGGTACTAGATTT-CTG
* * *
37227519 TTGCGGCCTCAATCCTTCCTATCACATATTCTAAGGTACAGGGTTCACCGTTGCGGCCTCAACCT
65 TTGTGGCCTCAATCATTCCCATCACAT-TTCTAAGGTACAGGGTTCACCGTTGCGGCCTCAACCT
* * ** * * *
37227584 TTCCCTTTATTTTCATGGTACCGAATTCGTCGTTGCAGCCTCAAT-CATTCTCATAACATCTTTT
129 TTCCCTTTATTTTCATGGTACCGAATTTGCCGTTGTGGCCTCAATCCTTTC-CATCACATCTTCT
37227648 AA
193 AA
* *
37227650 GGTATAGGGTTCGCCGTTGCGACATCAACCTTTCCCTTCATATCTTCATGGTACTAGATTTGTCG
1 GGTATAGGGTTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATGGTACTAGATTTCT-G
* **** * *
37227715 TTGTGGCTTCAATCATTCCCATCACATCTTCTAAGGTACAGGGTTTGTTGTTGCGGCATTAACCT
65 TTGTGGCCTCAATCATTCCCATCACAT-TTCTAAGGTACAGGGTTCACCGTTGCGGCCTCAACCT
* *
37227780 TTCCCTTTA-TTTCTATGGTACCGAATTTACCGTTGTGGCTTCAATCCTTTCCATCACATCTTCT
129 TTCCCTTTATTTTC-ATGGTACCGAATTTGCCGTTGTGGCCTCAATCCTTTCCATCACATCTTCT
37227844 AA
193 AA
* *
37227846 GGTATAGGGTTTGCTGTTGC-AGCCTCAACCTTTCCCTT
1 GGTATAGGGTTCGCCGTTGCGA-CCTCAACCTTTCCCTT
37227884 TATTTCTGTA
Statistics
Matches: 366, Mismatches: 55, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
195 10 0.03
196 235 0.64
197 52 0.14
198 69 0.19
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.37
Consensus pattern (194 bp):
GGTATAGGGTTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATGGTACTAGATTTCTGT
TGTGGCCTCAATCATTCCCATCACATTTCTAAGGTACAGGGTTCACCGTTGCGGCCTCAACCTTT
CCCTTTATTTTCATGGTACCGAATTTGCCGTTGTGGCCTCAATCCTTTCCATCACATCTTCTAA
Found at i:37228751 original size:50 final size:49
Alignment explanation
Indices: 37228704--37228867 Score: 179
Period size: 50 Copynumber: 3.3 Consensus size: 49
37228694 TTACCGTTGT
* *
37228704 GGCCTCAATCCTTTCCATCACATCTTTTAAAGTACAGGGTTTGCCGTTGC
1 GGCCTCAAT-CTTTCCATCACATCTTTTAAAGTACAGGGTTCGCCGTTAC
* * * * * *
37228754 GGCCTCAATCTTTCCCTTCATATC-TTCATAGTACCA-GATTCGCTGTTAC
1 GGCCTCAATCTTT-CCATCACATCTTTTAAAGTA-CAGGGTTCGCCGTTAC
* *
37228803 GGCCTCAATCTTTCTCATTACATCTTTTAAGGTACAGGGTTCGCCGTTAC
1 GGCCTCAATCTTTC-CATCACATCTTTTAAAGTACAGGGTTCGCCGTTAC
*
37228853 GGCCTCAACCTTTCC
1 GGCCTCAATCTTTCC
37228868 CTTTATTTTC
Statistics
Matches: 92, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
48 1 0.01
49 42 0.46
50 49 0.53
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.35
Consensus pattern (49 bp):
GGCCTCAATCTTTCCATCACATCTTTTAAAGTACAGGGTTCGCCGTTAC
Found at i:37228788 original size:99 final size:98
Alignment explanation
Indices: 37228531--37229163 Score: 543
Period size: 99 Copynumber: 6.4 Consensus size: 98
37228521 CCTATCATGT
* ** * * * * *
37228531 TTTTAAGGTACAAGGTTCACTGTTACGGCCTCAACCTTTCCCCTTTATATTTTCATGGTACTAAA
1 TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTT-CCC-TTATATCTTCATGGTACCAGA
* * * * * *
37228596 TCCATCATTGCGGCCTCGAT-CTTTCCCATCACGTC
64 TTCACCGTTGTGGCCTCAATCCTTT-CCATCACATC
* * * * * *
37228631 -TCTAAGGTACCA-GGTTCGCTGTTGCGGCCTTAACCTTT-TCTTCATATTTTCATGGTACCAGA
1 TTTTAAGGTA-CAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTT-ATATCTTCATGGTACCAGA
*
37228693 TTTACCGTTGTGGCCTCAATCCTTTCCATCACATC
64 TTCACCGTTGTGGCCTCAATCCTTTCCATCACATC
* * *
37228728 TTTTAAAGTACAGGGTTTGCCGTTGCGGCCTCAATCTTTCCCTTCATATCTTCATAGTACCAGAT
1 TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTT-ATATCTTCATGGTACCAGAT
* * ** *
37228793 TCGCTGTTACGGCCTCAAT-CTTTCTCATTACATC
65 TCACCGTTGTGGCCTCAATCCTTTC-CATCACATC
* * *
37228827 TTTTAAGGTACAGGGTTCGCCGTTACGGCCTCAACCTTTCCCTT-TATTTTCATGGTACC-GAAT
1 TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTTATATCTTCATGGTACCAG-AT
** * ** * * *
37228890 TCGTCATTGCAGCCTCAATCATTCCCATCATATC
65 TCACCGTTGTGGCCTCAATCCTTTCCATCACATC
* * * *
37228924 TTTTAAGGTACAAGGTTTACCGTTGCGGTCTCAACCTTTCCCTTTATATCTTCATGATACCAGAT
1 TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCC-TTATATCTTCATGGTACCAGAT
* * * *
37228989 TCGCCGTTGTGGCTTC-ATTCATTCCTATCACATC
65 TCACCGTTGTGGCCTCAATCCTTTCC-ATCACATC
* * * * *
37229023 TTTTAAGGTACAAGGTTCGCCATTGCAGCCTCAACCTTTCCCTT-TAT-TTCCATGGTACCAAAT
1 TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTTATATCTT-CATGGTACCAGAT
* * *
37229086 TCACCGTTGTGGCTTCAATCCTTCCCATCATAT-
65 TCACCGTTGTGGCCTCAATCCTTTCCATCACATC
* *
37229119 TTTCTAAGGTATAGGGTTTGCCGTTGTGGCCTCAA-CTATTCCCTT
1 TTT-TAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCT-TTCCCTT
37229164 TATTTCTGTA
Statistics
Matches: 437, Mismatches: 79, Indels: 37
0.79 0.14 0.07
Matches are distributed among these distances:
96 10 0.02
97 183 0.42
98 56 0.13
99 185 0.42
100 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.37
Consensus pattern (98 bp):
TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTTATATCTTCATGGTACCAGATT
CACCGTTGTGGCCTCAATCCTTTCCATCACATC
Found at i:37228957 original size:50 final size:49
Alignment explanation
Indices: 37228696--37229040 Score: 121
Period size: 50 Copynumber: 7.0 Consensus size: 49
37228686 TACCAGATTT
* * * * * * *
37228696 ACCGTTGTGGCCTCAATCCTTTCCATCACATCTTTTAAAGTACAGGGTTT
1 ACCGTTGCGG-CTCAATCATTCCCATCATATCTTTTAAGGTACAAGGTTC
* * * * * *
37228746 GCCGTTGCGGCCTCAATCTTTCCCTTCATATC-TTCATA-GTACCAGATTC
1 ACCGTTGCGG-CTCAATCATTCCCATCATATCTTTTA-AGGTACAAGGTTC
* * * * * * * *
37228795 GCTGTTACGGCCTCAATCTTTCTCATTACATCTTTTAAGGTACAGGGTTC
1 ACCGTTGCGG-CTCAATCATTCCCATCATATCTTTTAAGGTACAAGGTTC
* * * * * * *
37228845 GCCGTTACGGCCTCAACCTTTCCC-T-TTAT-TTTCATGGTACCGAA--TTC
1 ACCGTTGCGG-CTCAATCATTCCCATCATATCTTTTAAGGTA-C-AAGGTTC
** * * *
37228892 GTCATTGCAGCCTCAATCATTCCCATCATATCTTTTAAGGTACAAGGTTT
1 ACCGTTGC-GGCTCAATCATTCCCATCATATCTTTTAAGGTACAAGGTTC
* * * * * * * * *
37228942 ACCGTTGCGGTCTCAACCTTTCCCTTTATATC-TTCATGATACCAGATTC
1 ACCGTTGCGG-CTCAATCATTCCCATCATATCTTTTAAGGTACAAGGTTC
* * * * *
37228991 GCCGTTGTGGCTTCATTCATTCCTATCACATCTTTTAAGGTACAAGGTTC
1 ACCGTTGCGGC-TCAATCATTCCCATCATATCTTTTAAGGTACAAGGTTC
37229041 GCCATTGCAG
Statistics
Matches: 214, Mismatches: 67, Indels: 28
0.69 0.22 0.09
Matches are distributed among these distances:
47 27 0.13
48 8 0.04
49 76 0.36
50 103 0.48
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.37
Consensus pattern (49 bp):
ACCGTTGCGGCTCAATCATTCCCATCATATCTTTTAAGGTACAAGGTTC
Found at i:37229164 original size:196 final size:196
Alignment explanation
Indices: 37228512--37229166 Score: 678
Period size: 196 Copynumber: 3.3 Consensus size: 196
37228502 CGTTATGACT
* * * * ** * *
37228512 TCAATTCTTCCTATCATGT-TTTTAAGGTACAAGGTTCACTGTTACGGCCTCAACCTTTCCCCTT
1 TCAATCCTTCCCATCATATCTTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTT-CCCTT
* * * * * ** * * * * *
37228576 TATATTTTCATGGTACTAAATCCATCATTGCGGCCTCGATCTTTCC-CATCACGTC-TCTAAGGT
65 TATATCTTCATAGTACCAGATTCGCCGTTACGGCCTCAATC-TTCCTCATCACATCTTTTAAGGT
* * * * * *
37228639 ACCAGGTTCGCTGTTGCGGCCTTAACCTTT-TCTTCATATTTTCATGGTACCAGATTTACCGTTG
129 ACAAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTT--TATTTTCATGGTACCAAATTCACCGTTG
37228703 TGGCC
192 TGGCC
* * * * *
37228708 TCAATCCTTTCCATCACATCTTTTAAAGTACAGGGTTTGCCGTTGCGGCCTCAATCTTTCCCTTC
1 TCAATCCTTCCCATCATATCTTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTTT
* * *
37228773 ATATCTTCATAGTACCAGATTCGCTGTTACGGCCTCAATCTTTCTCATTACATCTTTTAAGGTAC
66 ATATCTTCATAGTACCAGATTCGCCGTTACGGCCTCAATCTTCCTCATCACATCTTTTAAGGTAC
* * * ** * **
37228838 AGGGTTCGCCGTTACGGCCTCAACCTTTCCCTTTATTTTCATGGTACCGAATTCGTCATTGCAGC
131 AAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTATTTTCATGGTACCAAATTCACCGTTGTGGC
37228903 C
196 C
* * * *
37228904 TCAATCATTCCCATCATATCTTTTAAGGTACAAGGTTTACCGTTGCGGTCTCAACCTTTCCCTTT
1 TCAATCCTTCCCATCATATCTTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTTT
** * *
37228969 ATATCTTCAT-GATACCAGATTCGCCGTTGTGGCTTCATTCATTCCT-ATCACATCTTTTAAGGT
66 ATATCTTCATAG-TACCAGATTCGCCGTTACGGCCTCAATC-TTCCTCATCACATCTTTTAAGGT
* * *
37229032 ACAAGGTTCGCCATTGCAGCCTCAACCTTTCCCTTTATTTCCATGGTACCAAATTCACCGTTGTG
129 ACAAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTATTTTCATGGTACCAAATTCACCGTTGTG
*
37229097 GCT
194 GCC
* *
37229100 TCAATCCTTCCCATCATAT-TTTCTAAGGTATAGGGTTTGCCGTTGTGGCCTCAA-CTATTCCCT
1 TCAATCCTTCCCATCATATCTTT-TAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCT-TTCCCT
37229163 TTAT
64 TTAT
37229167 TTCTGTAGAA
Statistics
Matches: 375, Mismatches: 76, Indels: 16
0.80 0.16 0.03
Matches are distributed among these distances:
195 9 0.02
196 295 0.79
197 68 0.18
198 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.37
Consensus pattern (196 bp):
TCAATCCTTCCCATCATATCTTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTTT
ATATCTTCATAGTACCAGATTCGCCGTTACGGCCTCAATCTTCCTCATCACATCTTTTAAGGTAC
AAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTATTTTCATGGTACCAAATTCACCGTTGTGGC
C
Found at i:37229169 original size:97 final size:97
Alignment explanation
Indices: 37228531--37229168 Score: 577
Period size: 97 Copynumber: 6.5 Consensus size: 97
37228521 CCTATCATGT
* ** * * * *
37228531 TTTTAAGGTACAAGGTTCACTGTTACGGCCTCAACCTTTCCCCTTTATATTTTCATGGTACTAAA
1 TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTT-CCC-TT-TATTTTCATGGTACCAGA
* ** * * * * *
37228596 TCCATCATTGCGGCCTCGATCTTTCCCATCACGTC
63 TTCGCCGTTGTGGCCTCAATCATTCCCATCACATC
* * * * *
37228631 -TCTAAGGTACCA-GGTTCGCTGTTGCGGCCTTAACCTTT-TCTTCATATTTTCATGGTACCAGA
1 TTTTAAGGTA-CAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTT--TATTTTCATGGTACCAGA
** * *
37228693 TTTACCGTTGTGGCCTCAATCCTTTCCATCACATC
63 TTCGCCGTTGTGGCCTCAATCATTCCCATCACATC
* * * *
37228728 TTTTAAAGTACAGGGTTTGCCGTTGCGGCCTCAATCTTTCCCTTCATATCTTCATAGTACCAGAT
1 TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTT--TATTTTCATGGTACCAGAT
* ** * * *
37228793 TCGCTGTTACGGCCTCAATCTTTCTCATTACATC
64 TCGCCGTTGTGGCCTCAATCATTCCCATCACATC
* *
37228827 TTTTAAGGTACAGGGTTCGCCGTTACGGCCTCAACCTTTCCCTTTATTTTCATGGTACC-GAATT
1 TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTTTATTTTCATGGTACCAG-ATT
* * ** *
37228891 CGTCATTGCAGCCTCAATCATTCCCATCATATC
65 CGCCGTTGTGGCCTCAATCATTCCCATCACATC
* * * *
37228924 TTTTAAGGTACAAGGTTTACCGTTGCGGTCTCAACCTTTCCCTTTATATCTTCATGATACCAGAT
1 TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTTTAT-T-TTCATGGTACCAGAT
* * *
37228989 TCGCCGTTGTGGCTTCATTCATTCCTATCACATC
64 TCGCCGTTGTGGCCTCAATCATTCCCATCACATC
* * * * * *
37229023 TTTTAAGGTACAAGGTTCGCCATTGCAGCCTCAACCTTTCCCTTTATTTCCATGGTACCAAATTC
1 TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTTTATTTTCATGGTACCAGATTC
* * * *
37229088 ACCGTTGTGGCTTCAATCCTTCCCATCATAT-
66 GCCGTTGTGGCCTCAATCATTCCCATCACATC
* *
37229119 TTTCTAAGGTATAGGGTTTGCCGTTGTGGCCTCAA-CTATTCCCTTTATTT
1 TTT-TAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCT-TTCCCTTTATTT
37229169 CTGTAGAATA
Statistics
Matches: 445, Mismatches: 82, Indels: 25
0.81 0.15 0.05
Matches are distributed among these distances:
96 8 0.02
97 205 0.46
98 31 0.07
99 198 0.44
100 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.37
Consensus pattern (97 bp):
TTTTAAGGTACAGGGTTTGCCGTTGCGGCCTCAACCTTTCCCTTTATTTTCATGGTACCAGATTC
GCCGTTGTGGCCTCAATCATTCCCATCACATC
Found at i:37229862 original size:49 final size:50
Alignment explanation
Indices: 37229767--37229907 Score: 137
Period size: 49 Copynumber: 2.9 Consensus size: 50
37229757 TCATCTTCGG
* * * * * *
37229767 GGTATAAGATTCGTCGTTGTGGCTTCAAACCTTT-TCATCATGTTTTTA-A
1 GGTATAAGGTTCGTCGTTGCGGCCTC-AACCTTTCCCTTCATATTTTTATA
*
37229816 GGTATAAGGTTCGTCGTTGCGACCTCAACCTTTCCCTTCATATTTTTATA
1 GGTATAAGGTTCGTCGTTGCGGCCTCAACCTTTCCCTTCATATTTTTATA
** **
37229866 -GTA-CCGGATTCACCGTTGCGGCCTCAACCTTTCCCTTCATAT
1 GGTATAAGG-TTCGTCGTTGCGGCCTCAACCTTTCCCTTCATAT
37229908 CTTCATGGTA
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
48 9 0.12
49 67 0.87
50 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (50 bp):
GGTATAAGGTTCGTCGTTGCGGCCTCAACCTTTCCCTTCATATTTTTATA
Found at i:37229988 original size:99 final size:99
Alignment explanation
Indices: 37229878--37230392 Score: 591
Period size: 99 Copynumber: 5.3 Consensus size: 99
37229868 ACCGGATTCA
* ** *
37229878 CCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCGAATTCACTGTTGCAGCCTCAAT
1 CCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCGAATTCACCGTTGTGGCTTCAAT
** * * *
37229943 CCTTCAAATCACATCTTTTAAGGTAAATGGTTTG
66 CCTTCCCATCACATCTTCTAAGGTACAGGGTTTG
* * * *
37229977 CCGTTGTGGCCTCAACCTTTCTCTT--TAT-TTCTATGGTACCGAATTCACCGTTGTAGCCTCAA
1 CCGTTGCGGCCTCAACCTTTCCCTTCATATCTTC-ATGGTACCGAATTCACCGTTGTGGCTTCAA
* *
37230039 TCCTTCTCATCACATCTTCTAAGGTATAGGGTTTG
65 TCCTTCCCATCACATCTTCTAAGGTACAGGGTTTG
* * *
37230074 CCGTTGCAGCCTTAACC-TTCCCTTTCATATCTTCATGGTATCGAATTCACCGTTGTGGCTTCAA
1 CCGTTGCGGCCTCAACCTTTCCC-TTCATATCTTCATGGTACCGAATTCACCGTTGTGGCTTCAA
* * *
37230138 TCCTTCCCACCATATAC-TCTAAGGTACAGGG-TTC
65 TCCTTCCCATCACAT-CTTCTAAGGTACAGGGTTTG
* * * *
37230172 CCTGTTACGGTCTCAACCTTTCCCTTCATATCTTCATGGTATCGAATTCGCCGTTGTGGCTTCAA
1 CC-GTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCGAATTCACCGTTGTGGCTTCAA
* * *
37230237 TCCTTTCCATCACATCTTTTAAGGTACAGGGTTCG
65 TCCTTCCCATCACATCTTCTAAGGTACAGGGTTTG
* * *
37230272 CCGTTGTGGCCTCAACCATTCTCTT--TAT-TTCCATGGTACCGAATTCACCGTTGTGGCTTCAA
1 CCGTTGCGGCCTCAACCTTTCCCTTCATATCTT-CATGGTACCGAATTCACCGTTGTGGCTTCAA
* * * *
37230334 TGCTTCCCATCACATCTTCTATGGTATAGGGTTCG
65 TCCTTCCCATCACATCTTCTAAGGTACAGGGTTTG
*
37230369 CC-TTACGGCCTCAACCTTTCCCTT
1 CCGTTGCGGCCTCAACCTTTCCCTT
37230393 TATTTCTATA
Statistics
Matches: 357, Mismatches: 48, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
96 27 0.08
97 141 0.39
98 5 0.01
99 172 0.48
100 12 0.03
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.36
Consensus pattern (99 bp):
CCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCGAATTCACCGTTGTGGCTTCAAT
CCTTCCCATCACATCTTCTAAGGTACAGGGTTTG
Found at i:37230085 original size:50 final size:49
Alignment explanation
Indices: 37229929--37230093 Score: 120
Period size: 50 Copynumber: 3.4 Consensus size: 49
37229919 CGAATTCACT
** * *
37229929 GTTGCAGCCTCAATCCTTCAAATCACATCTTTTAAGGTAAATGGTTTGCC
1 GTTGCAGCCTCAA-CCTTCTCATCACATCTTCTAAGGTAAAGGGTTTGCC
** ** * ** ** **
37229979 GTTGTGGCCTCAACCTT-TC-TCTTTAT-TTCTATGGTACCGAATTCACC
1 GTTGCAGCCTCAACCTTCTCATC-ACATCTTCTAAGGTAAAGGGTTTGCC
* *
37230026 GTTGTAGCCTCAATCCTTCTCATCACATCTTCTAAGGTATAGGGTTTGCC
1 GTTGCAGCCTCAA-CCTTCTCATCACATCTTCTAAGGTAAAGGGTTTGCC
*
37230076 GTTGCAGCCTTAACCTTC
1 GTTGCAGCCTCAACCTTC
37230094 CCTTTCATAT
Statistics
Matches: 83, Mismatches: 27, Indels: 11
0.69 0.22 0.09
Matches are distributed among these distances:
47 26 0.31
48 6 0.07
49 13 0.16
50 38 0.46
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (49 bp):
GTTGCAGCCTCAACCTTCTCATCACATCTTCTAAGGTAAAGGGTTTGCC
Found at i:37230140 original size:196 final size:196
Alignment explanation
Indices: 37229878--37230401 Score: 607
Period size: 196 Copynumber: 2.7 Consensus size: 196
37229868 ACCGGATTCA
* * ** *
37229878 CCGTTGCGGCCTCAACCTTTCCC-TTCATATCTTCATGGTACCGAATTCACTGTTGCAGCCTCAA
1 CCGTTGCGGCCTCAACCATTCCCTTTCATATCTTCATGGTACCGAATTCACCGTTGTGGCTTCAA
** * ** *
37229942 TCCTTCAAATCACATCTTTTAAGGTAAATGGTTTGCCGTTGTGGCCTCAACCTTTCTCTTTATTT
66 TCCTTCCCATCACATCTTCTAAGGTAAA-GGTTTGCCGTTACGGCCTCAACCTTTCCCTTTATTT
*
37230007 CTATGGTACCGAATTCACCGTTGTAGCCTCAATCC-TTCTCATCACATCTTCTAAGGTATAGGGT
130 CTATGGTACCGAATTCACCGTTGTAGCCTCAATCCTTTC-CATCACATCTTCTAAGGTACAGGGT
*
37230071 TTG
194 TCG
* * *
37230074 CCGTTGCAGCCTTAACC-TTCCCTTTCATATCTTCATGGTATCGAATTCACCGTTGTGGCTTCAA
1 CCGTTGCGGCCTCAACCATTCCCTTTCATATCTTCATGGTACCGAATTCACCGTTGTGGCTTCAA
* * * * * *
37230138 TCCTTCCCACCATATAC-TCTAAGGTACAGGGTTCCCTGTTACGGTCTCAACCTTTCCCTTCATA
66 TCCTTCCCATCACAT-CTTCTAAGGTAAAGGTTTGCC-GTTACGGCCTCAACCTTTCCCTT--TA
* * * * *
37230202 TCTTC-ATGGTATCGAATTCGCCGTTGTGGCTTCAATCCTTTCCATCACATCTTTTAAGGTACAG
127 T-TTCTATGGTACCGAATTCACCGTTGTAGCCTCAATCCTTTCCATCACATCTTCTAAGGTACAG
37230266 GGTTCG
191 GGTTCG
* * *
37230272 CCGTTGTGGCCTCAACCATTCTCTTT-AT-T-TCCATGGTACCGAATTCACCGTTGTGGCTTCAA
1 CCGTTGCGGCCTCAACCATTCCCTTTCATATCTTCATGGTACCGAATTCACCGTTGTGGCTTCAA
* * * *
37230334 TGCTTCCCATCACATCTTCTATGGTATAGGGTTCGCC-TTACGGCCTCAACCTTTCCCTTTATTT
66 TCCTTCCCATCACATCTTCTAAGGTA-AAGGTTTGCCGTTACGGCCTCAACCTTTCCCTTTATTT
37230398 CTAT
130 CTAT
37230402 AGAATTTGCT
Statistics
Matches: 275, Mismatches: 42, Indels: 25
0.80 0.12 0.07
Matches are distributed among these distances:
192 3 0.01
193 5 0.02
195 33 0.12
196 141 0.51
197 7 0.03
198 73 0.27
199 13 0.05
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.36
Consensus pattern (196 bp):
CCGTTGCGGCCTCAACCATTCCCTTTCATATCTTCATGGTACCGAATTCACCGTTGTGGCTTCAA
TCCTTCCCATCACATCTTCTAAGGTAAAGGTTTGCCGTTACGGCCTCAACCTTTCCCTTTATTTC
TATGGTACCGAATTCACCGTTGTAGCCTCAATCCTTTCCATCACATCTTCTAAGGTACAGGGTTC
G
Found at i:37232149 original size:19 final size:20
Alignment explanation
Indices: 37232116--37232157 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
37232106 TCATTTAGAC
37232116 TTTTTCCTTCTTTTCTTTAT
1 TTTTTCCTTCTTTTCTTTAT
* *
37232136 TTTTTCTTTC-TTTCTTTCT
1 TTTTTCCTTCTTTTCTTTAT
37232155 TTT
1 TTT
37232158 CTTAGGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTCCTTCTTTTCTTTAT
Found at i:37236243 original size:37 final size:38
Alignment explanation
Indices: 37236170--37236257 Score: 99
Period size: 37 Copynumber: 2.3 Consensus size: 38
37236160 AGATAAAACG
* *
37236170 AATTTAAAAAAAGTTTAAAGGTAAACTAGACGAA-TTTA
1 AATTT-AAAAGAGTTTAAAGGTAAACTAGACAAATTTTA
*
37236208 AATTTAAAAGAGTTTAAAGGTAAATTAGTA-AAATTTTA
1 AATTTAAAAGAGTTTAAAGGTAAACTAG-ACAAATTTTA
*
37236246 AAGATTAAAAGA
1 AA-TTTAAAAGA
37236258 TAAAGAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
37 23 0.53
38 12 0.28
39 8 0.19
ACGTcount: A:0.53, C:0.02, G:0.14, T:0.31
Consensus pattern (38 bp):
AATTTAAAAGAGTTTAAAGGTAAACTAGACAAATTTTA
Found at i:37247839 original size:88 final size:88
Alignment explanation
Indices: 37247690--37247863 Score: 339
Period size: 88 Copynumber: 2.0 Consensus size: 88
37247680 TGAATTATTA
37247690 TAAATTATTTGAAATTTAAATAATGTTGAGTTTAGATTCATTACTAACATTGAATTCAAATCATT
1 TAAATTATTTGAAATTTAAATAATGTTGAGTTTAGATTCATTACTAACATTGAATTCAAATCATT
*
37247755 TTCTATCTGAGAGTTAATTTGGT
66 TTCTATCTAAGAGTTAATTTGGT
37247778 TAAATTATTTGAAATTTAAATAATGTTGAGTTTAGATTCATTACTAACATTGAATTCAAATCATT
1 TAAATTATTTGAAATTTAAATAATGTTGAGTTTAGATTCATTACTAACATTGAATTCAAATCATT
37247843 TTCTATCTAAGAGTTAATTTG
66 TTCTATCTAAGAGTTAATTTG
37247864 TGTTTTTAAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (88 bp):
TAAATTATTTGAAATTTAAATAATGTTGAGTTTAGATTCATTACTAACATTGAATTCAAATCATT
TTCTATCTAAGAGTTAATTTGGT
Found at i:37260605 original size:14 final size:14
Alignment explanation
Indices: 37260586--37260613 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37260576 GGCTCTTCAA
37260586 CGAAAAACTTAGTC
1 CGAAAAACTTAGTC
37260600 CGAAAAACTTAGTC
1 CGAAAAACTTAGTC
37260614 AAGGCATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.14, T:0.21
Consensus pattern (14 bp):
CGAAAAACTTAGTC
Found at i:37262154 original size:7 final size:7
Alignment explanation
Indices: 37262145--37262174 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
37262135 TGTGCATTCT
*
37262145 CACATCT
1 CACATCA
37262152 CACATCA
1 CACATCA
37262159 CACATCA
1 CACATCA
37262166 CACATCA
1 CACATCA
37262173 CA
1 CA
37262175 TGAGATGGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.40, C:0.43, G:0.00, T:0.17
Consensus pattern (7 bp):
CACATCA
Found at i:37264193 original size:27 final size:27
Alignment explanation
Indices: 37264152--37264203 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
37264142 ATTTGAATTC
*
37264152 AAGTTTAAAGCTCAAGTTTAGGGTTTA
1 AAGTTTAAAGCTCAAGTCTAGGGTTTA
* *
37264179 AAGTTTAGAGTTCAAGTCTAGGGTT
1 AAGTTTAAAGCTCAAGTCTAGGGTT
37264204 CGAGATTCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.37
Consensus pattern (27 bp):
AAGTTTAAAGCTCAAGTCTAGGGTTTA
Found at i:37266004 original size:18 final size:18
Alignment explanation
Indices: 37265973--37266008 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
37265963 TCAATTTCTT
37265973 AATTCGACTTAAATATAAA
1 AATTCGACTTAAAT-TAAA
37265992 AATTCGA-TTAAATTAAA
1 AATTCGACTTAAATTAAA
37266009 TTAATAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 6 0.35
19 7 0.41
ACGTcount: A:0.53, C:0.08, G:0.06, T:0.33
Consensus pattern (18 bp):
AATTCGACTTAAATTAAA
Found at i:37271989 original size:22 final size:22
Alignment explanation
Indices: 37271958--37272006 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
37271948 ATATACATTT
*
37271958 TTTAACAAATTTAACAAATAAA
1 TTTAAAAAATTTAACAAATAAA
*
37271980 TTTAAAAAATTTAATAAATAAA
1 TTTAAAAAATTTAACAAATAAA
37272002 TTTAA
1 TTTAA
37272007 TGTTTCATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAAAATTTAACAAATAAA
Found at i:37272007 original size:13 final size:13
Alignment explanation
Indices: 37271964--37272007 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
37271954 ATTTTTTAAC
*
37271964 AAATTTAACAAAT
1 AAATTTAATAAAT
37271977 AAA-TT--TAAA-
1 AAATTTAATAAAT
37271986 AAATTTAATAAAT
1 AAATTTAATAAAT
37271999 AAATTTAAT
1 AAATTTAAT
37272008 GTTTCATTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
9 3 0.12
10 5 0.19
12 6 0.23
13 12 0.46
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (13 bp):
AAATTTAATAAAT
Found at i:37275319 original size:28 final size:27
Alignment explanation
Indices: 37275256--37275344 Score: 79
Period size: 31 Copynumber: 3.0 Consensus size: 27
37275246 AATTTACAAG
* *
37275256 AATTGTATCAAATCGAAATTTCATGTATA
1 AATTGCAT-AAATC-AAAATTCATGTATA
*
37275285 AATTTGCATAAATCAAAATTCGTGTATA
1 AA-TTGCATAAATCAAAATTCATGTATA
*
37275313 CAATTGCACATTAAATCATAATTCATGTATA
1 -AATTG--CA-TAAATCAAAATTCATGTATA
37275344 A
1 A
37275345 TTTTAATATT
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
28 15 0.30
29 9 0.18
30 8 0.16
31 18 0.36
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (27 bp):
AATTGCATAAATCAAAATTCATGTATA
Found at i:37283593 original size:7 final size:7
Alignment explanation
Indices: 37283581--37283656 Score: 57
Period size: 7 Copynumber: 11.1 Consensus size: 7
37283571 CTCGAAAAAA
37283581 GTCAACG
1 GTCAACG
37283588 GTCAACG
1 GTCAACG
* *
37283595 ATCAACT
1 GTCAACG
*
37283602 GTTAACG
1 GTCAACG
* *
37283609 ATCAATG
1 GTCAACG
37283616 GTCAACG
1 GTCAACG
*
37283623 ATCAA--
1 GTCAACG
*
37283628 GTTAACG
1 GTCAACG
*
37283635 ATCAACG
1 GTCAACG
*
37283642 GTCAATG
1 GTCAACG
37283649 GTCAACG
1 GTCAACG
37283656 G
1 G
37283657 GTTAATGGTC
Statistics
Matches: 49, Mismatches: 18, Indels: 4
0.69 0.25 0.06
Matches are distributed among these distances:
5 3 0.06
7 46 0.94
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.21
Consensus pattern (7 bp):
GTCAACG
Found at i:37283608 original size:14 final size:13
Alignment explanation
Indices: 37283591--37283639 Score: 64
Period size: 14 Copynumber: 3.7 Consensus size: 13
37283581 GTCAACGGTC
37283591 AACGATCAACTGTT
1 AACGATCAA-TGTT
*
37283605 AACGATCAATGGTC
1 AACGATCAAT-GTT
37283619 AACGATCAA-GTT
1 AACGATCAATGTT
37283631 AACGATCAA
1 AACGATCAA
37283640 CGGTCAATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 11 0.34
13 1 0.03
14 20 0.62
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.22
Consensus pattern (13 bp):
AACGATCAATGTT
Found at i:37283638 original size:26 final size:27
Alignment explanation
Indices: 37283582--37283655 Score: 105
Period size: 26 Copynumber: 2.7 Consensus size: 27
37283572 TCGAAAAAAG
37283582 TCAACGGTCAACGATCAACTGTTAACGA
1 TCAACGGTCAACGATCAAC-GTTAACGA
*
37283610 TCAATGGTCAACGATCAA-GTTAACGA
1 TCAACGGTCAACGATCAACGTTAACGA
* *
37283636 TCAACGGTCAATGGTCAACG
1 TCAACGGTCAACGATCAACG
37283656 GGTTAATGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
26 23 0.56
27 1 0.02
28 17 0.41
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (27 bp):
TCAACGGTCAACGATCAACGTTAACGA
Found at i:37285770 original size:18 final size:18
Alignment explanation
Indices: 37285730--37285763 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37285720 TAAATAGGTT
37285730 TAAATTTATTATTAAATA
1 TAAATTTATTATTAAATA
37285748 TAAATTTATT-TTAAAT
1 TAAATTTATTATTAAAT
37285764 TTGAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAAATTTATTATTAAATA
Found at i:37285777 original size:17 final size:17
Alignment explanation
Indices: 37285757--37285798 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
37285747 ATAAATTTAT
37285757 TTTAAATTTGAAAT-AAA
1 TTTAAATTT-AAATAAAA
*
37285774 TTTAAATTTAATTAAAA
1 TTTAAATTTAAATAAAA
37285791 TTTAAATT
1 TTTAAATT
37285799 AAAAAAAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (17 bp):
TTTAAATTTAAATAAAA
Found at i:37285781 original size:6 final size:6
Alignment explanation
Indices: 37285728--37285798 Score: 53
Period size: 6 Copynumber: 12.3 Consensus size: 6
37285718 TTTAAATAGG
* * *
37285728 TTTAAA TTT-AT TATTAAA TATAAA TTT-AT TTTAAA TTTGAAA --TAAA
1 TTTAAA TTTAAA T-TTAAA TTTAAA TTTAAA TTTAAA TTT-AAA TTTAAA
*
37285774 TTTAAA TTT-AA TTAAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TT
37285799 AAAAAAAACC
Statistics
Matches: 50, Mismatches: 8, Indels: 14
0.69 0.11 0.19
Matches are distributed among these distances:
4 3 0.06
5 11 0.22
6 31 0.62
7 5 0.10
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (6 bp):
TTTAAA
Found at i:37285801 original size:28 final size:28
Alignment explanation
Indices: 37285731--37285801 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
37285721 AAATAGGTTT
* * *
37285731 AAATTTATTATTAAATATAAATTTATTTT
1 AAATTTA-AATTAAATATAAATTTAATTA
*
37285760 AAATTTGAAA-TAAATTTAAATTTAATTA
1 AAATTT-AAATTAAATATAAATTTAATTA
37285788 AAATTTAAATTAAA
1 AAATTTAAATTAAA
37285802 AAAAACCCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 3 0.08
28 25 0.69
29 7 0.19
30 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (28 bp):
AAATTTAAATTAAATATAAATTTAATTA
Found at i:37286520 original size:17 final size:17
Alignment explanation
Indices: 37286500--37286549 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
37286490 ATAAATTTAT
37286500 TTTAAATTTGAAAT-AAA
1 TTTAAATTT-AAATAAAA
*
37286517 TTTAAATTTAATTAAAA
1 TTTAAATTTAAATAAAA
37286534 TTTAAATTTAAA-AAAA
1 TTTAAATTTAAATAAAA
37286550 CCCAAAAGTC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 7 0.23
17 23 0.77
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (17 bp):
TTTAAATTTAAATAAAA
Found at i:37286524 original size:6 final size:6
Alignment explanation
Indices: 37286471--37286545 Score: 61
Period size: 6 Copynumber: 13.0 Consensus size: 6
37286461 TTTAAATAGG
* * *
37286471 TTTAAA TTT-AT TATTAAA TATAAA TTT-AT TTTAAA TTTGAAA --TAAA
1 TTTAAA TTTAAA T-TTAAA TTTAAA TTTAAA TTTAAA TTT-AAA TTTAAA
*
37286517 TTTAAA TTT-AA TTAAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
37286546 AAAACCCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
4 3 0.06
5 11 0.20
6 35 0.65
7 5 0.09
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:37286840 original size:743 final size:742
Alignment explanation
Indices: 37285411--37286897 Score: 2821
Period size: 743 Copynumber: 2.0 Consensus size: 742
37285401 TGCGGTGACA
* * *
37285411 ACGTTTGAAATTCCTGTGCTGGTGCTTCCAGATGTACTTGTAGCTTGAATTCACTCATGCAAAGT
1 ACGTGTGAAATTCCTATGCTGGTGCTTCCAGATGTACTTATAGCTTGAATTCACTCATGCAAAGT
*
37285476 AAAAATTTCTATGCGTTGACATCTTTGGCCGCAATTCCAAGCTATACTGTGGCTGTATTCTTCTT
66 AAAAATTTCTATGCGTCGACATCTTTGGCCGCAATTCCAAGCTATACTGTGGCTGTATTCTTCTT
37285541 CCAGCATTGATCTTCTGAGATGAGTTCCTGCGCTGACAATTCTAAGGCGCAATATATCGGCTGCT
131 CCAGCATTGATCTTCTGAGATGAGTTCCTGCGCTGACAATTCTAAGGCGCAATATATCGGCTGCT
37285606 TGTAGCGACATTAGTGCAAAAAGAGGTAAAAATACCAAGAATCTAAACCAACTAACAATGAGTTA
196 TGTAGCGACATTAGTGCAAAAAGAGGTAAAAATACCAAGAATCTAAACCAACTAACAATGAGTTA
*
37285671 TGTTGGAGCCCAATTTTGATTGAAGCCAAGGGATTGGGTTTTTTGGGTTTAAATAGGTTTAAATT
261 TGTTGGAGCCCAATTTTGATCGAAGCCAAGGGATTGGGTTTTTTGGGTTTAAATAGGTTTAAATT
37285736 TATTATTAAATATAAATTTATTTTAAATTTGAAATAAATTTAAATTTAATTAAAATTTAAATTAA
326 TATTATTAAATATAAATTTATTTTAAATTTGAAATAAATTTAAATTTAATTAAAATTTAAATTAA
37285801 AAAAAACCCAAAAGTCCAATTAGAAAGTCCATTTACAAGCCCAAATTAGGGCCCAATTACAAATT
391 AAAAAACCCAAAAGTCCAATTAGAAAGTCCATTTACAAGCCCAAATTAGGGCCCAATTACAAATT
37285866 AACCCAAACAAATCCCTTTACACCCTAAGCCCAAATTACATTGACCCATATCCCTAGCCCAATTA
456 AACCCAAACAAATCCCTTTACACCCTAAGCCCAAATTACATTGACCCATATCCCTAGCCCAATTA
37285931 TACAAAGTGACCCATGTCAGATCTGCTCCCACTTGCACTGACACCACCACCAACCTAGCCAACCA
521 TACAAAGTGACCCATGTCAGATCTGCTCCCACTTGCACTGACACCACCACCAACCTAGCCAACCA
* *
37285996 GGGCATGCCGCGTCATTGTCATCAACATCACCTTCAGCCAGACTGCATCTTCTTCAACCAGCTAC
586 GGGCATGCCACGTCATTGTCATCAACATCACCTCCAGCCAGACTGCATCTTCTTCAACCAGCTAC
37286061 TCCAACCGCCACTGCAACAGTCGAACCTGCAAAAGAAAAGATGGATTAGAACTAGCATTTAAATG
651 TCCAACCGCCACTGCAACAGTCGAACCTGCAAAAGAAAAGATGGATTAGAACTAGCATTTAAATG
37286126 TGGAAAAACAAAATTGAAGGATTATAT
716 TGGAAAAACAAAATTGAAGGATTATAT
37286153 ACGTGTGAAATTCCTATGCTGGTGCTTCCAGATGTACTTATAGCTTGAATTCACTCATGCAAAGT
1 ACGTGTGAAATTCCTATGCTGGTGCTTCCAGATGTACTTATAGCTTGAATTCACTCATGCAAAGT
37286218 AAAAATTTCTATGCGTCGACATCTTTGGCCGCAATTCCAAGCTATACTTGTGGCTGTATTCTTCT
66 AAAAATTTCTATGCGTCGACATCTTTGGCCGCAATTCCAAGCTATAC-TGTGGCTGTATTCTTCT
* *
37286283 TCCAGCATTGATCTTTTGAGATGAGTTCTTGCGCTGACAATTCTAAGGCGCAATATATCGGCTGC
130 TCCAGCATTGATCTTCTGAGATGAGTTCCTGCGCTGACAATTCTAAGGCGCAATATATCGGCTGC
*
37286348 TTGTAGCGACATTAGTGCAAAAAGAGGTAAAAATACCAAGAATTTAAACCAACTAACAATGAGTT
195 TTGTAGCGACATTAGTGCAAAAAGAGGTAAAAATACCAAGAATCTAAACCAACTAACAATGAGTT
37286413 ATGTTGGAGCCCAATTTTGATCGAAGCCAAGGGATTGGGTTTTTTGGGTTTAAATAGGTTTAAAT
260 ATGTTGGAGCCCAATTTTGATCGAAGCCAAGGGATTGGGTTTTTTGGGTTTAAATAGGTTTAAAT
*
37286478 TTATTATTAAATATAAATTTATTTTAAATTTGAAATAAATTTAAATTTAATTAAAATTTAAATTT
325 TTATTATTAAATATAAATTTATTTTAAATTTGAAATAAATTTAAATTTAATTAAAATTTAAATTA
37286543 AAAAAAACCCAAAAGTCCAATTAGAAAGTCCATTTACAAGCCCAAATTAGGGCCCAATTACAAAT
390 AAAAAAACCCAAAAGTCCAATTAGAAAGTCCATTTACAAGCCCAAATTAGGGCCCAATTACAAAT
37286608 TAACCCAAACAAATCCCTTTACACCCTAAGCCCAAATTACATTGACCCATATCCCTAGCCCAATT
455 TAACCCAAACAAATCCCTTTACACCCTAAGCCCAAATTACATTGACCCATATCCCTAGCCCAATT
37286673 ATACAAAGTGACCCATGTCAGATCTGCTCCCACTTGCACTGACACCACCACCAACCTAGCCAACC
520 ATACAAAGTGACCCATGTCAGATCTGCTCCCACTTGCACTGACACCACCACCAACCTAGCCAACC
* * *
37286738 AGGGCATGCCACGTCATTGTCATCAGCATCACCTCCAGCCAGATTGCATCTTCTTCAACCAGCTG
585 AGGGCATGCCACGTCATTGTCATCAACATCACCTCCAGCCAGACTGCATCTTCTTCAACCAGCTA
*
37286803 CTCCAACCGCCACTGCAACAGTCGAACCTGCAAAAGAAAAGATGGATTAGGACTAGCATTTAAAT
650 CTCCAACCGCCACTGCAACAGTCGAACCTGCAAAAGAAAAGATGGATTAGAACTAGCATTTAAAT
*
37286868 GTGGAAAAACAAAATTGAATGATTATAT
715 GTGGAAAAACAAAATTGAAGGATTATAT
37286896 AC
1 AC
37286898 ATGGCTATAA
Statistics
Matches: 728, Mismatches: 16, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
742 108 0.15
743 620 0.85
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (742 bp):
ACGTGTGAAATTCCTATGCTGGTGCTTCCAGATGTACTTATAGCTTGAATTCACTCATGCAAAGT
AAAAATTTCTATGCGTCGACATCTTTGGCCGCAATTCCAAGCTATACTGTGGCTGTATTCTTCTT
CCAGCATTGATCTTCTGAGATGAGTTCCTGCGCTGACAATTCTAAGGCGCAATATATCGGCTGCT
TGTAGCGACATTAGTGCAAAAAGAGGTAAAAATACCAAGAATCTAAACCAACTAACAATGAGTTA
TGTTGGAGCCCAATTTTGATCGAAGCCAAGGGATTGGGTTTTTTGGGTTTAAATAGGTTTAAATT
TATTATTAAATATAAATTTATTTTAAATTTGAAATAAATTTAAATTTAATTAAAATTTAAATTAA
AAAAAACCCAAAAGTCCAATTAGAAAGTCCATTTACAAGCCCAAATTAGGGCCCAATTACAAATT
AACCCAAACAAATCCCTTTACACCCTAAGCCCAAATTACATTGACCCATATCCCTAGCCCAATTA
TACAAAGTGACCCATGTCAGATCTGCTCCCACTTGCACTGACACCACCACCAACCTAGCCAACCA
GGGCATGCCACGTCATTGTCATCAACATCACCTCCAGCCAGACTGCATCTTCTTCAACCAGCTAC
TCCAACCGCCACTGCAACAGTCGAACCTGCAAAAGAAAAGATGGATTAGAACTAGCATTTAAATG
TGGAAAAACAAAATTGAAGGATTATAT
Found at i:37288499 original size:29 final size:28
Alignment explanation
Indices: 37288448--37288556 Score: 92
Period size: 29 Copynumber: 3.7 Consensus size: 28
37288438 AACTGTCTAG
* ** *
37288448 AAATCACATTTTGGCCCTAAAACTTTAGA
1 AAATTACATTTTAACCCCAAAACTTTA-A
*
37288477 AAATTACATTTTAACCCCGAAACTTCTAA
1 AAATTACATTTTAACCCCAAAACTT-TAA
* * *
37288506 AAATTACATTTTTACCCTCAAAATTTTCCA
1 AAATTACATTTTAACCC-CAAAACTTT-AA
*
37288536 AAATTCCATTTTTAACCCCAA
1 AAATTACA-TTTTAACCCCAA
37288557 TTTCACCAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
29 38 0.58
30 19 0.29
31 8 0.12
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.34
Consensus pattern (28 bp):
AAATTACATTTTAACCCCAAAACTTTAA
Found at i:37288601 original size:59 final size:58
Alignment explanation
Indices: 37288530--37288869 Score: 282
Period size: 58 Copynumber: 5.8 Consensus size: 58
37288520 CCCTCAAAAT
*
37288530 TTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAAGTTACCATTTTACCCCTGAAC
1 TTTCCTAAATTCCATTTTTAACCCCAATTTCACCAAAA-TTACCATTTTACCCCTGAAC
* ** * *
37288589 TTTCCTAAATTCCA-TTTTAACCCTAATTTTGCCTAAAATTACCGTTTTACCCCTAAATC
1 TTTCCTAAATTCCATTTTTAACCCCAATTTCACC-AAAATTACCATTTTACCCCTGAA-C
* * * * ** *
37288648 TTT--TAAAATTCTATTTTTGACCCTAATTTTAATAAAATCACCATTTTACCCCTGAA-
1 TTTCCT-AAATTCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCTGAAC
* * * *
37288704 TCTTCCAAAATTCCATTTTTGACCCCAATTTCACCAAAATTACCGTTTTA-TCCTCGAAC
1 T-TTCCTAAATTCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCT-GAAC
** * * * * *
37288763 TTTCC-AAAACCCTATTTTTAATCTCGATTTCACTAAAAATTACCATTTTACCCCCGAAC
1 TTTCCTAAATTCC-ATTTTTAACCCCAATTTCAC-CAAAATTACCATTTTACCCCTGAAC
* * **
37288822 CTT-CTAAAATCCCATTTTTAACCCCAAATTTTTCCAAAATTA-CATTTT
1 TTTCCT-AAATTCCATTTTTAACCCC-AATTTCACCAAAATTACCATTTT
37288870 TGCCCCCCCG
Statistics
Matches: 225, Mismatches: 41, Indels: 31
0.76 0.14 0.10
Matches are distributed among these distances:
56 1 0.00
57 11 0.05
58 126 0.56
59 74 0.33
60 13 0.06
ACGTcount: A:0.31, C:0.27, G:0.03, T:0.38
Consensus pattern (58 bp):
TTTCCTAAATTCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCTGAAC
Found at i:37288606 original size:28 final size:30
Alignment explanation
Indices: 37288564--37288644 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 30
37288554 CAATTTCACC
37288564 AAAAGTTACCATTTTACCCCTGAACTTT-CCT
1 AAAA-TTACCATTTTACCCCT-AACTTTGCCT
* *
37288595 -AAATT-CCATTTTAACCCTAATTTTGCCT
1 AAAATTACCATTTTACCCCTAACTTTGCCT
*
37288623 AAAATTACCGTTTTACCCCTAA
1 AAAATTACCATTTTACCCCTAA
37288645 ATCTTTTAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
27 5 0.12
28 15 0.35
29 7 0.16
30 16 0.37
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
AAAATTACCATTTTACCCCTAACTTTGCCT
Found at i:37288628 original size:29 final size:29
Alignment explanation
Indices: 37288476--37288722 Score: 127
Period size: 29 Copynumber: 8.4 Consensus size: 29
37288466 AAAACTTTAG
* * **
37288476 AAAATTACATTTTAACCCCGAAACTT-CT
1 AAAATTCCATTTTAACCCTGAATTTTCCT
* * *
37288504 AAAAATTACATTTTTACCCTCAAAATTTTCC-
1 -AAAATTCCATTTTAACCCT--GAATTTTCCT
* *
37288535 AAAATTCCATTTTTAACCC-CAA-TTTCACC
1 AAAATTCCA-TTTTAACCCTGAATTTTC-CT
* *
37288564 AAAAGTTACCATTTTACCCCTGAACTTTCCT
1 AAAA-TT-CCATTTTAACCCTGAATTTTCCT
37288595 -AAATTCCATTTTAACCCT-AATTTTGCCT
1 AAAATTCCATTTTAACCCTGAATTTT-CCT
* * *
37288623 AAAATTACCGTTTTACCCCTAAATCTTT--T
1 AAAATT-CCATTTTAACCCTGAAT-TTTCCT
* * **
37288652 AAAATTCTATTTTTGACCCT-AATTTTAAT
1 AAAATTCCA-TTTTAACCCTGAATTTTCCT
* * *
37288681 AAAATCACCATTTTACCCCTGAATCTTCC-
1 AAAAT-TCCATTTTAACCCTGAATTTTCCT
37288710 AAAATTCCATTTT
1 AAAATTCCATTTT
37288723 TGACCCCAAT
Statistics
Matches: 171, Mismatches: 27, Indels: 41
0.72 0.11 0.17
Matches are distributed among these distances:
27 12 0.07
28 29 0.17
29 62 0.36
30 39 0.23
31 21 0.12
32 8 0.05
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (29 bp):
AAAATTCCATTTTAACCCTGAATTTTCCT
Found at i:37288720 original size:116 final size:117
Alignment explanation
Indices: 37288535--37288864 Score: 305
Period size: 117 Copynumber: 2.8 Consensus size: 117
37288525 AAAATTTTCC
* * *
37288535 AAAATTCCATTTTTAACCCCAATTTCACCAAAAGTTACCATTTTACCCCTGAACTTTCCTAAATT
1 AAAATTCCATTTTTAACCCCAATTTCAACAAAAGTCACCATTTTACCCCTGAACTTTCCAAAATT
* **
37288600 CCA-TTTTAACCCTAATTTTGCCTAAAATTACCGTTTTACCCCTAAATCTTTT
66 CCATTTTTAACCCCAATTTCACC-AAAATTACCGTTTTACCCCTAAATCTTTT
* * * * *
37288652 AAAATTCTATTTTTGACCCTAATTTTAATAAAA-TCACCATTTTACCCCTGAA-TCTTCCAAAAT
1 AAAATTCCATTTTTAACCCCAATTTCAACAAAAGTCACCATTTTACCCCTGAACT-TTCCAAAAT
* * * *
37288715 TCCATTTTTGACCCCAATTTCACCAAAATTACCGTTTTA-TCCTCGAA-CTTTCC
65 TCCATTTTTAACCCCAATTTCACCAAAATTACCGTTTTACCCCT-AAATCTTT-T
* * * * * * * * *
37288768 AAAA-CCCTATTTTTAATCTCGATTTC-ACTAAAAATTACCATTTTACCCCCGAACCTTCTAAAA
1 AAAATTCC-ATTTTTAACCCCAATTTCAAC-AAAAGTCACCATTTTACCCCTGAACTTTCCAAAA
* **
37288831 TCCCATTTTTAACCCCAAATTTTTCCAAAATTAC
64 TTCCATTTTTAACCCC-AATTTCACCAAAATTAC
37288865 ATTTTTGCCC
Statistics
Matches: 172, Mismatches: 32, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
115 10 0.06
116 67 0.39
117 80 0.47
118 15 0.09
ACGTcount: A:0.32, C:0.27, G:0.03, T:0.37
Consensus pattern (117 bp):
AAAATTCCATTTTTAACCCCAATTTCAACAAAAGTCACCATTTTACCCCTGAACTTTCCAAAATT
CCATTTTTAACCCCAATTTCACCAAAATTACCGTTTTACCCCTAAATCTTTT
Found at i:37295129 original size:3 final size:3
Alignment explanation
Indices: 37295121--37295153 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
37295111 TGGGTAGTAA
37295121 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37295154 TATTATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37296531 original size:18 final size:19
Alignment explanation
Indices: 37296489--37296539 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
37296479 AACAAAAAAT
* *
37296489 ATAATACAATAATATTTTA
1 ATAATTCAATAATTTTTTA
37296508 ATAATTCAATAATTTTTTA
1 ATAATTCAATAATTTTTTA
*
37296527 A-AATTAAATAATT
1 ATAATTCAATAATT
37296540 AAAACGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 11 0.38
19 18 0.62
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAATTCAATAATTTTTTA
Found at i:37304717 original size:52 final size:52
Alignment explanation
Indices: 37304639--37304828 Score: 317
Period size: 52 Copynumber: 3.7 Consensus size: 52
37304629 GTAAATAAAG
37304639 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
*
37304691 AAAAGGTCTGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
* * * *
37304743 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGATTCCTTCACGGTTT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
* *
37304795 AAGAGGTCCGATGATTATGTGTCATCGTGAGTAT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTAT
37304829 TAAATGGAAT
Statistics
Matches: 130, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 130 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (52 bp):
AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
Found at i:37313975 original size:29 final size:29
Alignment explanation
Indices: 37313925--37314011 Score: 129
Period size: 29 Copynumber: 3.0 Consensus size: 29
37313915 TTTTGAGGAA
* * *
37313925 TTTGAGGGTCAAAATTGAAATTTTTGGATG
1 TTTGGGGGT-AAAATGGTAATTTTTGGATG
37313955 TTTGGGGGTAAAATGGTAATTTTTGGATG
1 TTTGGGGGTAAAATGGTAATTTTTGGATG
*
37313984 TTTGGGGGCAAAATGGTAATTTTTGGAT
1 TTTGGGGGTAAAATGGTAATTTTTGGAT
37314012 ATTCAAGGGC
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 45 0.85
30 8 0.15
ACGTcount: A:0.26, C:0.02, G:0.31, T:0.40
Consensus pattern (29 bp):
TTTGGGGGTAAAATGGTAATTTTTGGATG
Found at i:37314021 original size:29 final size:29
Alignment explanation
Indices: 37313910--37314064 Score: 116
Period size: 29 Copynumber: 5.3 Consensus size: 29
37313900 GGATGAAAAC
* *
37313910 GTAATTTTTGAGGA-ATTTGAGGGTCAAAATT
1 GTAATTTTT--GGATATTTAAGGG-CAAAATG
* * ** *
37313941 GAAATTTTTGGATGTTTGGGGGTAAAATG
1 GTAATTTTTGGATATTTAAGGGCAAAATG
* **
37313970 GTAATTTTTGGATGTTTGGGGGCAAAATG
1 GTAATTTTTGGATATTTAAGGGCAAAATG
* *
37313999 GTAATTTTTGGATATTCAAGGGCAAAATC
1 GTAATTTTTGGATATTTAAGGGCAAAATG
* * * *
37314028 ATAATTTTGGAGAAATTTAAGGTCAAAAT-
1 GTAATTTTTG-GATATTTAAGGGCAAAATG
37314057 GTAATTTT
1 GTAATTTT
37314065 GGAAATGTTT
Statistics
Matches: 104, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
29 74 0.71
30 22 0.21
31 8 0.08
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (29 bp):
GTAATTTTTGGATATTTAAGGGCAAAATG
Found at i:37314113 original size:30 final size:30
Alignment explanation
Indices: 37314029--37314230 Score: 232
Period size: 30 Copynumber: 6.8 Consensus size: 30
37314019 GGCAAAATCA
* *
37314029 TAATTTTGGAGAAA-TTTA-AGGTCAAAATG
1 TAATTTTGGA-AAAGTTTAGGGGTTAAAATG
*
37314058 TAATTTTGGAAATGTTTATGGGGTTAAAATG
1 TAATTTTGGAAAAGTTTA-GGGGTTAAAATG
37314089 TAATTTTGGAAAAGTTTAGGGGTTAAAATG
1 TAATTTTGGAAAAGTTTAGGGGTTAAAATG
*
37314119 TGATTTTGGAAAAGTTTAGGGGTTAAAATG
1 TAATTTTGGAAAAGTTTAGGGGTTAAAATG
* * *
37314149 TAATTTT-TATGAAGTTTAAGGGTTAAAATG
1 TAATTTTGGA-AAAGTTTAGGGGTTAAAATG
* * *
37314179 TAATTTTTGAGAAGTTTAGGGGTCAAAATG
1 TAATTTTGGAAAAGTTTAGGGGTTAAAATG
* * *
37314209 TGATTTTTGAGAAGTTT-GGGGT
1 TAATTTTGGAAAAGTTTAGGGGT
37314231 CAACTGTACA
Statistics
Matches: 155, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
28 2 0.01
29 20 0.13
30 106 0.68
31 27 0.17
ACGTcount: A:0.34, C:0.01, G:0.26, T:0.39
Consensus pattern (30 bp):
TAATTTTGGAAAAGTTTAGGGGTTAAAATG
Found at i:37314223 original size:60 final size:60
Alignment explanation
Indices: 37313905--37314233 Score: 259
Period size: 60 Copynumber: 5.5 Consensus size: 60
37313895 ATTCGGGATG
* * * * *
37313905 AAAACGTAATTTTTGAGGAA-TTTGAGGGTCAAAATTGAAATTTTTG-GATGTTTGGGGGT-
1 AAAATGTAATTTTTGA-GAAGTTTAAGGGTCAAAA-TGTAATTTTTGAGAAGTTTAGGGGTC
* * * * *
37313964 AAAATGGTAATTTTTG-GATGTTT-GGGGGCAAAATGGTAATTTTTG-GATA-TTCAAGGG-C
1 AAAAT-GTAATTTTTGAGAAGTTTAAGGGTCAAAAT-GTAATTTTTGAGA-AGTTTAGGGGTC
* * * * *
37314022 AAAATCATAATTTTGGAGAAATTTAA-GGTCAAAATGTAATTTTGGA-AATGTTTATGGGGTT
1 AAAAT-GTAATTTTTGAGAAGTTTAAGGGTCAAAATGTAATTTTTGAGAA-GTTTA-GGGGTC
* * * * * * * *
37314083 AAAATGTAATTTTGGAAAAGTTTAGGGGTTAAAATGTGATTTTGGAAAAGTTTAGGGGTT
1 AAAATGTAATTTTTGAGAAGTTTAAGGGTCAAAATGTAATTTTTGAGAAGTTTAGGGGTC
*
37314143 AAAATGTAATTTTT-ATGAAGTTTAAGGGTTAAAATGTAATTTTTGAGAAGTTTAGGGGTC
1 AAAATGTAATTTTTGA-GAAGTTTAAGGGTCAAAATGTAATTTTTGAGAAGTTTAGGGGTC
* *
37314203 AAAATGTGATTTTTGAGAAGTTT-GGGGTCAA
1 AAAATGTAATTTTTGAGAAGTTTAAGGGTCAA
37314234 CTGTACAATA
Statistics
Matches: 218, Mismatches: 36, Indels: 32
0.76 0.13 0.11
Matches are distributed among these distances:
57 2 0.01
58 49 0.22
59 30 0.14
60 106 0.49
61 29 0.13
62 2 0.01
ACGTcount: A:0.33, C:0.03, G:0.26, T:0.37
Consensus pattern (60 bp):
AAAATGTAATTTTTGAGAAGTTTAAGGGTCAAAATGTAATTTTTGAGAAGTTTAGGGGTC
Found at i:37314230 original size:29 final size:29
Alignment explanation
Indices: 37313905--37314233 Score: 226
Period size: 30 Copynumber: 11.1 Consensus size: 29
37313895 ATTCGGGATG
*
37313905 AAAACGTAATTTTTGAGGAA-TTTGAGGGTC
1 AAAATGTAATTTTTGA-GAAGTTTG-GGGTC
* *
37313935 AAAATTGAAATTTTTG-GATGTTTGGGGGT-
1 AAAA-TGTAATTTTTGAGAAGTTT-GGGGTC
* *
37313964 AAAATGGTAATTTTTG-GATGTTTGGGGGC
1 AAAAT-GTAATTTTTGAGAAGTTTGGGGTC
**
37313993 AAAATGGTAATTTTTG-GATA-TTCAAGGG-C
1 AAAAT-GTAATTTTTGAGA-AGTT-TGGGGTC
* * * **
37314022 AAAATCATAATTTTGGAGAAATTTAAGGTC
1 AAAAT-GTAATTTTTGAGAAGTTTGGGGTC
* *
37314052 AAAATGTAATTTTGGA-AATGTTTATGGGGTT
1 AAAATGTAATTTTTGAGAA-G-TT-TGGGGTC
* * *
37314083 AAAATGTAATTTTGGAAAAGTTTAGGGGTT
1 AAAATGTAATTTTTGAGAAGTTT-GGGGTC
* * * *
37314113 AAAATGTGATTTTGGAAAAGTTTAGGGGTT
1 AAAATGTAATTTTTGAGAAGTTT-GGGGTC
* *
37314143 AAAATGTAATTTTT-ATGAAGTTTAAGGGTT
1 AAAATGTAATTTTTGA-GAAGTTT-GGGGTC
37314173 AAAATGTAATTTTTGAGAAGTTTAGGGGTC
1 AAAATGTAATTTTTGAGAAGTTT-GGGGTC
*
37314203 AAAATGTGATTTTTGAGAAGTTTGGGGTC
1 AAAATGTAATTTTTGAGAAGTTTGGGGTC
37314232 AA
1 AA
37314234 CTGTACAATA
Statistics
Matches: 256, Mismatches: 26, Indels: 35
0.81 0.08 0.11
Matches are distributed among these distances:
28 7 0.03
29 80 0.31
30 135 0.53
31 32 0.12
32 2 0.01
ACGTcount: A:0.33, C:0.03, G:0.26, T:0.37
Consensus pattern (29 bp):
AAAATGTAATTTTTGAGAAGTTTGGGGTC
Found at i:37318987 original size:21 final size:22
Alignment explanation
Indices: 37318963--37319005 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
37318953 AAATATTTTC
37318963 AAAAAAT-A-TATT-AAAAAAT
1 AAAAAATAATTATTGAAAAAAT
*
37318982 AAAAAATAATTATTGACAAAAT
1 AAAAAATAATTATTGAAAAAAT
37319004 AA
1 AA
37319006 TAATATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.35
20 1 0.05
21 4 0.20
22 8 0.40
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (22 bp):
AAAAAATAATTATTGAAAAAAT
Found at i:37319033 original size:28 final size:32
Alignment explanation
Indices: 37319001--37319067 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 32
37318991 TTATTGACAA
37319001 AATAATAATAT-ATAAA-A-ATTTAAAAATAT
1 AATAATAATATCATAAATATATTTAAAAATAT
*
37319030 -AT-A-AATATGCATAAATATTTTTAAAAATAT
1 AATAATAATAT-CATAAATATATTTAAAAATAT
37319060 AATAATAA
1 AATAATAA
37319068 ATTTAAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 10
0.73 0.02 0.24
Matches are distributed among these distances:
26 5 0.17
27 1 0.03
28 7 0.23
29 1 0.03
30 11 0.37
31 2 0.07
32 1 0.03
33 2 0.07
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (32 bp):
AATAATAATATCATAAATATATTTAAAAATAT
Found at i:37322154 original size:5 final size:5
Alignment explanation
Indices: 37322146--37322171 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
37322136 CCCTCCTCAT
37322146 CCCAC CCCAC CCCAC CCCAC CCCAC C
1 CCCAC CCCAC CCCAC CCCAC CCCAC C
37322172 AACCCTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.81, G:0.00, T:0.00
Consensus pattern (5 bp):
CCCAC
Found at i:37323167 original size:14 final size:14
Alignment explanation
Indices: 37323150--37323184 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
37323140 TCATTTCTTT
*
37323150 CTTTTTTCTTTTTC
1 CTTTTTTCGTTTTC
*
37323164 CTTTTTCCGTTTTC
1 CTTTTTTCGTTTTC
37323178 CTTTTTT
1 CTTTTTT
37323185 TCTTCTGTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.74
Consensus pattern (14 bp):
CTTTTTTCGTTTTC
Found at i:37323976 original size:24 final size:24
Alignment explanation
Indices: 37323940--37323988 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
37323930 CCAGCAAAGA
* *
37323940 CTTCCAACTGATTCGCCTGAGAGG
1 CTTCCAACAGATTCGCCTAAGAGG
*
37323964 CTTCCAACAGATTCTCCTAAGAGG
1 CTTCCAACAGATTCGCCTAAGAGG
37323988 C
1 C
37323989 CTAGGGAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (24 bp):
CTTCCAACAGATTCGCCTAAGAGG
Found at i:37327170 original size:19 final size:18
Alignment explanation
Indices: 37327101--37327170 Score: 59
Period size: 19 Copynumber: 3.7 Consensus size: 18
37327091 AGACAAACAT
*
37327101 AAAATATATAAATTTATTA
1 AAAATATAAAAATTTA-TA
* *
37327120 AAAGATATTAAAATTGATA
1 AAA-ATATAAAAATTTATA
* * *
37327139 TAAATTTATAAATATTATA
1 AAAATATAAAAAT-TTATA
37327158 AAAATATAAAAAT
1 AAAATATAAAAAT
37327171 CTAATAAATT
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
18 7 0.18
19 21 0.55
20 10 0.26
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (18 bp):
AAAATATAAAAATTTATA
Found at i:37327177 original size:19 final size:18
Alignment explanation
Indices: 37327101--37327178 Score: 50
Period size: 17 Copynumber: 4.1 Consensus size: 18
37327091 AGACAAACAT
* *
37327101 AAAATATATAAATTTATTA
1 AAAATATA-AAAATTAATA
*
37327120 AAAGATATTAAAATTGATATA
1 AAA-ATATAAAAATT-A-ATA
** *
37327141 AATTTATAAATATT-ATA
1 AAAATATAAAAATTAATA
37327158 AAAATATAAAAATCTAATA
1 AAAATATAAAAAT-TAATA
37327177 AA
1 AA
37327179 TTATATTTTT
Statistics
Matches: 44, Mismatches: 10, Indels: 10
0.69 0.16 0.16
Matches are distributed among these distances:
17 13 0.30
18 1 0.02
19 13 0.30
20 13 0.30
21 4 0.09
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (18 bp):
AAAATATAAAAATTAATA
Found at i:37327253 original size:20 final size:20
Alignment explanation
Indices: 37327230--37327296 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
37327220 TATAAAAACG
37327230 TATAAAAATTCTTAACAACT
1 TATAAAAATTCTTAACAACT
* *
37327250 TATAGAAA-TCATTAA-AAAT
1 TATAAAAATTC-TTAACAACT
* *
37327269 TAAAAAAATTATTATAC-ACT
1 TATAAAAATTCTTA-ACAACT
37327289 TATAAAAA
1 TATAAAAA
37327297 ATTATAAATA
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
19 14 0.39
20 22 0.61
ACGTcount: A:0.57, C:0.09, G:0.01, T:0.33
Consensus pattern (20 bp):
TATAAAAATTCTTAACAACT
Found at i:37327311 original size:19 final size:22
Alignment explanation
Indices: 37327289--37327328 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
37327279 ATTATACACT
37327289 TATAAAA-AAT-T-ATAAATAC
1 TATAAAATAATATAATAAATAC
37327308 TATAAAATAATATAATAAATA
1 TATAAAATAATATAATAAATA
37327329 ATAATATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 3 0.17
21 1 0.06
22 7 0.39
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (22 bp):
TATAAAATAATATAATAAATAC
Found at i:37327321 original size:29 final size:27
Alignment explanation
Indices: 37327289--37327351 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
37327279 ATTATACACT
* *
37327289 TATAAAAAATTATAAATACTATAAAATAA
1 TATAAAAAATAAT-AATA-TATAAAAAAA
* *
37327318 TATAATAAATAATAATATGTAAAAAAA
1 TATAAAAAATAATAATATATAAAAAAA
37327345 TATAAAA
1 TATAAAA
37327352 TTAATGAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 14 0.48
28 4 0.14
29 11 0.38
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (27 bp):
TATAAAAAATAATAATATATAAAAAAA
Found at i:37328139 original size:20 final size:20
Alignment explanation
Indices: 37328115--37328172 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 20
37328105 ATTTTAAAGT
37328115 ATTTTATGA-GTTTTTAGGAA
1 ATTTTAT-ATGTTTTTAGGAA
* *
37328135 TTTTTATATGTTTTTATGAA
1 ATTTTATATGTTTTTAGGAA
37328155 ATTTTAAATATGTTTTTA
1 ATTTT--ATATGTTTTTA
37328173 TTAATTTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 1 0.03
20 20 0.62
22 11 0.34
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (20 bp):
ATTTTATATGTTTTTAGGAA
Found at i:37328165 original size:22 final size:21
Alignment explanation
Indices: 37328124--37328173 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
37328114 TATTTTATGA
* *
37328124 GTTTTTA-GGAATTTTTATAT
1 GTTTTTATGAAATTTTAATAT
37328144 GTTTTTATGAAATTTTAAATAT
1 GTTTTTATGAAATTTT-AATAT
37328166 GTTTTTAT
1 GTTTTTAT
37328174 TAATTTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 7 0.27
21 7 0.27
22 12 0.46
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (21 bp):
GTTTTTATGAAATTTTAATAT
Found at i:37328244 original size:10 final size:9
Alignment explanation
Indices: 37328077--37328248 Score: 57
Period size: 10 Copynumber: 18.0 Consensus size: 9
37328067 TTTTTATGGT
37328077 TTTTTATAA
1 TTTTTATAA
*
37328086 TTTTTTAAAA
1 -TTTTTATAA
*
37328096 TTTATATTAA
1 TTTTTA-TAA
37328106 -TTTTA-AA
1 TTTTTATAA
*
37328113 GTATTTTATGAG
1 -T-TTTTAT-AA
*
37328125 TTTTTAGGAA
1 TTTTTA-TAA
*
37328135 TTTTTATATG
1 TTTTTATA-A
37328145 TTTTTATGAAA
1 TTTTTAT--AA
* *
37328156 TTTTAAATATG
1 TTTT-TATA-A
37328167 TTTTTATTAA
1 TTTTTA-TAA
*
37328177 -TTTTGTAA
1 TTTTTATAA
37328185 TTTATTA-AA
1 TTT-TTATAA
*
37328194 ATTTTAT-A
1 TTTTTATAA
37328202 TTTTTATAA
1 TTTTTATAA
*
37328211 TATTTATAA
1 TTTTTATAA
* *
37328220 GTTCTTATCAT
1 -TTTTTAT-AA
37328231 TTTTTATAA
1 TTTTTATAA
*
37328240 CTTTTATAA
1 TTTTTATAA
37328249 ATTTAAATCT
Statistics
Matches: 118, Mismatches: 25, Indels: 39
0.65 0.14 0.21
Matches are distributed among these distances:
7 2 0.02
8 13 0.11
9 38 0.32
10 49 0.42
11 12 0.10
12 4 0.03
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (9 bp):
TTTTTATAA
Found at i:37348955 original size:7 final size:7
Alignment explanation
Indices: 37348939--37348971 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
37348929 ATGGGATGGG
37348939 ATTTTT-
1 ATTTTTC
37348945 ATTTTTC
1 ATTTTTC
37348952 ATTTTTC
1 ATTTTTC
37348959 ATTTTTC
1 ATTTTTC
37348966 ATTTTT
1 ATTTTT
37348972 TTTAAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (7 bp):
ATTTTTC
Found at i:37353319 original size:24 final size:25
Alignment explanation
Indices: 37353277--37353324 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
37353267 GATAGTAAAA
* * *
37353277 ATATAATTTTATTATTTTTGAAAGT
1 ATATAATTTTATAAATTTTAAAAGT
37353302 ATAT-ATTTTATAAATTTTAAAAG
1 ATATAATTTTATAAATTTTAAAAG
37353325 ATTAAATTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (25 bp):
ATATAATTTTATAAATTTTAAAAGT
Found at i:37362260 original size:17 final size:17
Alignment explanation
Indices: 37362238--37362272 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
37362228 AAACTATATA
* *
37362238 TTAAAATTATATTAATT
1 TTAAAACTATAATAATT
37362255 TTAAAACTATAATAATT
1 TTAAAACTATAATAATT
37362272 T
1 T
37362273 ATTTTAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAAAACTATAATAATT
Found at i:37362513 original size:15 final size:15
Alignment explanation
Indices: 37362489--37362528 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
37362479 TATTTTAAGT
*
37362489 TTATAATATTTTATA
1 TTATATTATTTTATA
*
37362504 TTATATTATTTTTTA
1 TTATATTATTTTATA
37362519 TT-TATTATTT
1 TTATATTATTT
37362529 AATTTAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.35
15 15 0.65
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTATATTATTTTATA
Found at i:37367177 original size:29 final size:29
Alignment explanation
Indices: 37367135--37367191 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
37367125 ACTTAAAATC
37367135 ATTGACCGAATTGATATTACGAGCTAATT
1 ATTGACCGAATTGATATTACGAGCTAATT
* *
37367164 ATTGACTGATTTGATATTACGAGCTAAT
1 ATTGACCGAATTGATATTACGAGCTAAT
37367192 CGAAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (29 bp):
ATTGACCGAATTGATATTACGAGCTAATT
Done.