Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 122 of 132
Found at i:37367797 original size:12 final size:12
Alignment explanation
Indices: 37367780--37367804 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37367770 GTCCATATAA
37367780 TTTTTATATTTT
1 TTTTTATATTTT
37367792 TTTTTATATTTT
1 TTTTTATATTTT
37367804 T
1 T
37367805 AAATTTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTATATTTT
Found at i:37367824 original size:14 final size:14
Alignment explanation
Indices: 37367785--37367825 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 14
37367775 TATAATTTTT
37367785 ATATTTTTT-TTT-
1 ATATTTTTTATTTA
*
37367797 ATATTTTTAAATTTA
1 ATATTTTT-TATTTA
37367812 ATATTTTTTATTTA
1 ATATTTTTTATTTA
37367826 TTAAAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 8 0.33
14 8 0.33
15 8 0.33
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
ATATTTTTTATTTA
Found at i:37367841 original size:26 final size:28
Alignment explanation
Indices: 37367778--37367841 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 28
37367768 TCGTCCATAT
* **
37367778 AATTTTTATATTTTTTTTTATATTTTTA
1 AATTTTTATATTTTTTATTATATTTAAA
*
37367806 AA-TTTAATATTTTTTATT-TA-TTAAA
1 AATTTTTATATTTTTTATTATATTTAAA
37367831 AATTTTTATAT
1 AATTTTTATAT
37367842 AGTCATCTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
25 5 0.17
26 9 0.30
27 14 0.47
28 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (28 bp):
AATTTTTATATTTTTTATTATATTTAAA
Found at i:37371266 original size:19 final size:20
Alignment explanation
Indices: 37371225--37371267 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
37371215 CCAAAAAATT
* *
37371225 TATTATAAAAATAATTTTCA
1 TATTATAAAAATAATTATAA
*
37371245 TATTATAAAAGT-ATTATAA
1 TATTATAAAAATAATTATAA
37371264 TATT
1 TATT
37371268 TTTTTTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (20 bp):
TATTATAAAAATAATTATAA
Found at i:37403411 original size:12 final size:10
Alignment explanation
Indices: 37403380--37403414 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
37403370 TGGAGGAAAG
37403380 GAAAATGAGA
1 GAAAATGAGA
37403390 GAAAATGAGA
1 GAAAATGAGA
*
37403400 GAAAATAAGA
1 GAAAATGAGA
37403410 GAAAA
1 GAAAA
37403415 GGGAATCCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.66, C:0.00, G:0.26, T:0.09
Consensus pattern (10 bp):
GAAAATGAGA
Found at i:37404863 original size:16 final size:18
Alignment explanation
Indices: 37404840--37404879 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
37404830 ATATTTTTAT
37404840 TATATTTAT-TTAAAATA
1 TATATTTATATTAAAATA
*
37404857 T-TATTTATATTAACATA
1 TATATTTATATTAAAATA
37404874 TATATT
1 TATATT
37404880 AAATGGTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 7 0.35
17 9 0.45
18 4 0.20
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (18 bp):
TATATTTATATTAAAATA
Found at i:37409322 original size:18 final size:17
Alignment explanation
Indices: 37409296--37409330 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37409286 CATTCATTCG
37409296 TATACATACATAATATTA
1 TATACATACAT-ATATTA
*
37409314 TATATATACATATATTA
1 TATACATACATATATTA
37409331 ACTAAGTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (17 bp):
TATACATACATATATTA
Found at i:37409902 original size:13 final size:14
Alignment explanation
Indices: 37409878--37409910 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
37409868 AAAAAAAACT
37409878 AAAAAAGTAAAAAG
1 AAAAAAGTAAAAAG
37409892 AAAAAAG-AAAAAG
1 AAAAAAGTAAAAAG
37409905 AAAAAA
1 AAAAAA
37409911 TATATTCAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (14 bp):
AAAAAAGTAAAAAG
Found at i:37409910 original size:7 final size:7
Alignment explanation
Indices: 37409878--37409910 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
37409868 AAAAAAAACT
37409878 AAAAAAG
1 AAAAAAG
*
37409885 TAAAAAG
1 AAAAAAG
37409892 AAAAAAG
1 AAAAAAG
37409899 -AAAAAG
1 AAAAAAG
37409905 AAAAAA
1 AAAAAA
37409911 TATATTCAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:37421273 original size:6 final size:6
Alignment explanation
Indices: 37421255--37421321 Score: 50
Period size: 6 Copynumber: 11.2 Consensus size: 6
37421245 TTAAATTGAT
* * *
37421255 TTTAAA TTT--A TTTAAA TTTAGA TTT-AT TTTAAA TTTAAATA TTTTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT-AA-A -TTTAAA
*
37421303 TTTGAA TTTAAA TTTAAA T
1 TTTAAA TTTAAA TTTAAA T
37421322 AAAAATTAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
4 4 0.08
5 3 0.06
6 33 0.69
7 3 0.06
8 2 0.04
9 3 0.06
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (6 bp):
TTTAAA
Found at i:37421274 original size:16 final size:16
Alignment explanation
Indices: 37421255--37421312 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
37421245 TTAAATTGAT
37421255 TTTAAATTTATTTAAA
1 TTTAAATTTATTTAAA
*
37421271 TTTAGATTTATTTTAAA
1 TTTAAATTTA-TTTAAA
37421288 TTTAAATATT-TTT-AA
1 TTTAAAT-TTATTTAAA
*
37421303 TTTGAATTTA
1 TTTAAATTTA
37421313 AATTTAAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
14 2 0.06
15 8 0.22
16 12 0.33
17 12 0.33
18 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TTTAAATTTATTTAAA
Found at i:37421301 original size:27 final size:27
Alignment explanation
Indices: 37421245--37421324 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
37421235 GACTTTTGAG
* **
37421245 TTAAATTGATTTTAAATTTATTTAAAT
1 TTAATTTGATTTTAAATTTAAATAAAT
**
37421272 TTAGATTT-ATTTTAAATTTAAATATTT
1 TTA-ATTTGATTTTAAATTTAAATAAAT
*
37421299 TTAATTTGAATTTAAATTTAAATAAA
1 TTAATTTGATTTTAAATTTAAATAAA
37421325 AATTAAAGTA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.09
27 36 0.84
28 3 0.07
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (27 bp):
TTAATTTGATTTTAAATTTAAATAAAT
Found at i:37421804 original size:27 final size:25
Alignment explanation
Indices: 37421774--37421824 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 25
37421764 CCCGTGCACA
*
37421774 AAATCAATATACAACAACCTATTTTCG
1 AAATCAAAATACAA-AACC-ATTTTCG
37421801 AAATCAAAATACAAAACCATTTTC
1 AAATCAAAATACAAAACCATTTTC
37421825 CAGCAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 6 0.26
26 4 0.17
27 13 0.57
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (25 bp):
AAATCAAAATACAAAACCATTTTCG
Found at i:37422168 original size:20 final size:20
Alignment explanation
Indices: 37422127--37422169 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
37422117 CAATAAACAT
* *
37422127 TAATATTAAGTAATTATTAA
1 TAATATTAAGCAATTATAAA
37422147 TAATATTAA-CAATTAATAAA
1 TAATATTAAGCAATT-ATAAA
37422167 TAA
1 TAA
37422170 AAAGGGGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TAATATTAAGCAATTATAAA
Found at i:37422228 original size:6 final size:6
Alignment explanation
Indices: 37422219--37422245 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
37422209 TGCCACCGTC
37422219 GCCGGA GCCGGA GCCGGA GCCGGA GCC
1 GCCGGA GCCGGA GCCGGA GCCGGA GCC
37422246 CGTCACCGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.37, G:0.48, T:0.00
Consensus pattern (6 bp):
GCCGGA
Found at i:37423044 original size:162 final size:162
Alignment explanation
Indices: 37422865--37423178 Score: 420
Period size: 162 Copynumber: 1.9 Consensus size: 162
37422855 CTTTTCAATT
*
37422865 TAGTCCATTGACTGTTTGACTGTACCATGA-GCTGCCACGTGTC-TCTTTTTGGATTATTTATGC
1 TAGTCCATTGACTGTTTGACTGCACCA-GAGGCTGCCACGTGTCAT-TTTTTGGATTATTTATGC
** *
37422928 ATTTAGTCCTTTTTATTTTTTATTTGTTTTAATTTAATCCCCAAATCAAC-TTTATTTTAATTAC
64 ATTTAGTCCTTGGTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTA-TTTAATTAC
*
37422992 GAAATTGACCCAATAA-TTTTTCAAGGTTTATAAAC
128 AAAATTGACCCAA-AATTTTTTCAAGGTTTATAAAC
* * * * *
37423027 TAGTCCTTTGACTGTTTGACTGCACCAGAGGTTGCCACGTGTCATTTTTTTGATTATTTCTTCAT
1 TAGTCCATTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCATTTTTTGGATTATTTATGCAT
** * *
37423092 TTAGTCCTTGGTATTTTTAATTTGTTTTAATTTAATCCTTAAATCGACTTTTATTTAATTATAAA
66 TTAGTCCTTGGTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTATTTAATTACAAA
**
37423157 ATTGGTCCAAAATTTTTTCAAG
131 ATTGACCCAAAATTTTTTCAAG
37423179 ATTTTCAAAT
Statistics
Matches: 132, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
161 4 0.03
162 123 0.93
163 5 0.04
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (162 bp):
TAGTCCATTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCATTTTTTGGATTATTTATGCAT
TTAGTCCTTGGTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTATTTAATTACAAA
ATTGACCCAAAATTTTTTCAAGGTTTATAAAC
Found at i:37423240 original size:162 final size:161
Alignment explanation
Indices: 37422895--37423240 Score: 362
Period size: 162 Copynumber: 2.1 Consensus size: 161
37422885 TGTACCATGA
* * ** *
37422895 GCTGCCACGTGTCTCTTTTTGGATTATTTATGCATTTAGTCCTTTTTATTTTTTATTTGTTTTAA
1 GCTGCCACGTGTCACTTTTTTGATTATTTATGCATTTAGTCCTTGGTATTTTTAATTTGTTTTAA
* *
37422960 TTTAATCCCCAAATCAACTTTATTTTAATTACGAAATTGACCCAATAATTTTTCAAGGTTTATAA
66 TTTAATCCCCAAATCAACTTTATTTTAATTACAAAATTGACCCAATAATTTTTCAAGATTTATAA
* * *
37423025 ACTAGTCCTTTGACTGTTTGACTGCACCAGAG
131 ACTAGTCCCTTGACTGCTGGACT-CACCAGAG
* * * *
37423057 GTTGCCACGTGTCATTTTTTTGATTATTTCTTCATTTAGTCCTTGGTATTTTTAATTTGTTTTAA
1 GCTGCCACGTGTCACTTTTTTGATTATTTATGCATTTAGTCCTTGGTATTTTTAATTTGTTTTAA
** * * **
37423122 TTTAATCCTTAAATCGACTTT-TATTTAATTATAAAATTGGTCCAA-AATTTTTTCAAGATTT-T
66 TTTAATCCCCAAATCAACTTTAT-TTTAATTACAAAATTGACCCAATAA-TTTTTCAAGATTTAT
* * * *
37423184 CAAATTGGTCCCTTGACCT-CTGGA-T-ACCTGTGGG
129 -AAACTAGTCCCTTGA-CTGCTGGACTCACC--AGAG
37423218 GCTGCCACGTGTCACCTTTTTTG
1 GCTGCCACGTGTCA-CTTTTTTG
37423241 GTTTTATTAC
Statistics
Matches: 151, Mismatches: 26, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
159 3 0.02
161 20 0.13
162 126 0.83
163 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (161 bp):
GCTGCCACGTGTCACTTTTTTGATTATTTATGCATTTAGTCCTTGGTATTTTTAATTTGTTTTAA
TTTAATCCCCAAATCAACTTTATTTTAATTACAAAATTGACCCAATAATTTTTCAAGATTTATAA
ACTAGTCCCTTGACTGCTGGACTCACCAGAG
Found at i:37423302 original size:30 final size:30
Alignment explanation
Indices: 37423260--37423389 Score: 190
Period size: 30 Copynumber: 4.4 Consensus size: 30
37423250 CTTTGAAAGC
* *
37423260 CCCCTAAA-TTTTCCAAAATTATATTTTGA
1 CCCCAAAACTTTTCCAAAATTACATTTTGA
* *
37423289 CCCCGAAACTTTTCCAAAATTATATTTTGA
1 CCCCAAAACTTTTCCAAAATTACATTTTGA
* *
37423319 CCTCAAAACTTTACCAAAATTACATTTTGA
1 CCCCAAAACTTTTCCAAAATTACATTTTGA
*
37423349 CCCCAAAACTTTTCCAAAATTACATTTTGG
1 CCCCAAAACTTTTCCAAAATTACATTTTGA
37423379 CCCCAAAACTT
1 CCCCAAAACTT
37423390 CCAAAAATTA
Statistics
Matches: 92, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
29 7 0.08
30 85 0.92
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (30 bp):
CCCCAAAACTTTTCCAAAATTACATTTTGA
Found at i:37423413 original size:30 final size:29
Alignment explanation
Indices: 37423334--37423425 Score: 80
Period size: 30 Copynumber: 3.1 Consensus size: 29
37423324 AAACTTTACC
*
37423334 AAAATTACATTTTGA-CCCCAAAACTTTTCC-
1 AAAATTACATTCT-ACCCCCAAAAC--TTCCA
* **
37423364 AAAATTACATTTTGGCCCCAAAACTTCCA
1 AAAATTACATTCTACCCCCAAAACTTCCA
* *
37423393 AAAATTACCATTCTACCCCCAAAGCTTCTA
1 AAAATTA-CATTCTACCCCCAAAACTTCCA
37423423 AAA
1 AAA
37423426 TTCCGTTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
28 4 0.08
29 7 0.13
30 42 0.79
ACGTcount: A:0.39, C:0.28, G:0.04, T:0.28
Consensus pattern (29 bp):
AAAATTACATTCTACCCCCAAAACTTCCA
Found at i:37423415 original size:60 final size:60
Alignment explanation
Indices: 37423272--37423411 Score: 178
Period size: 60 Copynumber: 2.4 Consensus size: 60
37423262 CCTAAATTTT
* * * * *
37423272 CCAAAATTATATTTTGACCCCGAAACTTTTCCAAAATTATATTTTGACCTCAAAACTTTA
1 CCAAAATTACATTCTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTA
* *
37423332 CCAAAATTACATTTTGACCCCAAAACTTTTCCAAAATTACATTTTGGCCCCAAAAC-TT-
1 CCAAAATTACATTCTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTA
37423390 CCAAAAATTACCATTCT-ACCCC
1 CC-AAAATTA-CATTCTGACCCC
37423412 CAAAGCTTCT
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
58 2 0.03
59 14 0.19
60 56 0.78
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.32
Consensus pattern (60 bp):
CCAAAATTACATTCTGACCCCAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTA
Found at i:37423456 original size:59 final size:59
Alignment explanation
Indices: 37423393--37423884 Score: 684
Period size: 59 Copynumber: 8.4 Consensus size: 59
37423383 AAAACTTCCA
* * * * *
37423393 AAAATTACCATTCTACCCCCAAAGCTTCTAAAATTCCGTTTTTAACCCCGATTTCACTG
1 AAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACCG
* * *
37423452 AAAATTGCCATTTTACCCCTGAAACTTAC-AAAATTCCATTTTTAACCCCGATTTCACCG
1 AAAATTACCATTTTACCCCCGAATCTT-CTAAAATTCCATTTTTAACCCCGATTTCACCG
* * * * **
37423511 AAAATTACCATTTTACCCTCGAATCTTTTAAAATTCCGTTTTCAACCCTAATTTCACCG
1 AAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACCG
* *
37423570 AAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCG
1 AAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACCG
* * * *
37423629 AAAATTACCATTTTACCCCCGAATCTTTTAAAATTCTATTTTTAACCTCGATTTCACCA
1 AAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACCG
* *
37423688 AAAATTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTTAACCCCGATTTCACCA
1 AAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACCG
* * *
37423747 AAAATTACCATTTTACCCCTGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCACCA
1 AAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACCG
* * * *
37423806 AAAATTGCCATTTTACCCCCGAATCTTTTAAAATTCCATTTTTAATCCCGATTACA-C-
1 AAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACCG
*
37423863 AAAATTACCATTTTGCCCCCGA
1 AAAATTACCATTTTACCCCCGA
37423885 GTATCCATAA
Statistics
Matches: 388, Mismatches: 43, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
57 20 0.05
58 1 0.00
59 366 0.94
60 1 0.00
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (59 bp):
AAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACCG
Found at i:37436133 original size:40 final size:39
Alignment explanation
Indices: 37436070--37436155 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
37436060 GTAAGAGCAA
** * *
37436070 CCTCATCCTTTTGAAAGTGAAGTAGAGTTGGATAACGCGT
1 CCTCATCCCCTTGAAAGTAAAGTAGAG-TGGATAACACGT
* *
37436110 CTTCATCCCCTTGAAATTAAAGTAGAGTGGATAACACGT
1 CCTCATCCCCTTGAAAGTAAAGTAGAGTGGATAACACGT
37436149 CCTCATC
1 CCTCATC
37436156 TCTGAAATTG
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (39 bp):
CCTCATCCCCTTGAAAGTAAAGTAGAGTGGATAACACGT
Found at i:37436192 original size:68 final size:68
Alignment explanation
Indices: 37436112--37436691 Score: 1034
Period size: 68 Copynumber: 8.5 Consensus size: 68
37436102 TAACGCGTCT
* *
37436112 TCATCCCCTTGAAATTAAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37436177 ACG
66 ACG
37436180 TCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37436245 ACG
66 ACG
*
37436248 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
1 TCATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGC
37436313 AACG
65 AACG
* *
37436317 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37436382 ACG
66 ACG
* *
37436385 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGTA
1 TCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37436450 ACG
66 ACG
*
37436453 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
1 TCATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGC
37436518 AACG
65 AACG
*
37436522 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37436587 ACG
66 ACG
*
37436590 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
1 TCATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGC
37436655 AACG
65 AACG
37436659 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAA
1 TCATCCTCTTGAAATTGAAGTAGAG-TGGATAA
37436692 AAGAAGAGTT
Statistics
Matches: 496, Mismatches: 13, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
68 290 0.58
69 206 0.42
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (68 bp):
TCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
ACG
Found at i:37436293 original size:137 final size:137
Alignment explanation
Indices: 37436112--37436788 Score: 1079
Period size: 137 Copynumber: 4.8 Consensus size: 137
37436102 TAACGCGTCT
*
37436112 TCATCCCCTTGAAATTAAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
*
37436177 ACGTCATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAGTAAG
66 ACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAG
37436241 AGCAACG
131 AGCAACG
* *
37436248 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
1 TCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGC
*
37436313 AACGTCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTCATCTCTGAAATTGAAGTAA
65 AACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAA
37436377 GAGCAACG
130 GAGCAACG
*
37436385 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGTA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37436450 ACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAG
66 ACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAG
37436515 AGCAACG
131 AGCAACG
37436522 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37436587 ACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAG
66 ACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAG
37436652 AGCAACG
131 AGCAACG
* *
37436659 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAAAAGAAGAGTTGGATAACACGTCTTCATCTCTG
1 TCATCCCCTTGAAATT---G-A-A----G-T------AGAG-TGGATAACACGTCCTCATCTCTG
* * *
37436724 AAATTGAAGTAAGAGCAACCTCATCCTCTTGAAAGTGAAGTAGAGTTGGATAACGCGTCTTCATC
49 AAATTGAAGTAAGAGCAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATC
37436789 CCCTTGAAAT
Statistics
Matches: 507, Mismatches: 15, Indels: 20
0.94 0.03 0.04
Matches are distributed among these distances:
136 88 0.17
137 326 0.64
140 1 0.00
141 1 0.00
142 1 0.00
146 1 0.00
147 1 0.00
153 4 0.01
154 84 0.17
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (137 bp):
TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
ACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAG
AGCAACG
Found at i:37436464 original size:205 final size:205
Alignment explanation
Indices: 37436112--37436691 Score: 1106
Period size: 205 Copynumber: 2.8 Consensus size: 205
37436102 TAACGCGTCT
*
37436112 TCATCCCCTTGAAATTAAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37436177 ACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGA
66 ACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGA
37436242 GCAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGT
131 GCAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGT
37436307 AAGAGCAACG
196 AAGAGCAACG
*
37436317 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
*
37436382 ACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGA
66 ACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGA
*
37436447 GTAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGT
131 GCAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGT
37436512 AAGAGCAACG
196 AAGAGCAACG
37436522 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
*
37436587 ACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAG
66 ACGTCATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAGTAAG
37436652 AGCAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAA
130 AGCAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAA
37436692 AAGAAGAGTT
Statistics
Matches: 366, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
205 292 0.80
206 74 0.20
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (205 bp):
TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
ACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGA
GCAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGT
AAGAGCAACG
Found at i:37436754 original size:85 final size:85
Alignment explanation
Indices: 37436611--37436776 Score: 314
Period size: 85 Copynumber: 2.0 Consensus size: 85
37436601 AAATTGAAGT
* *
37436611 AGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGTCATCCTCTTGAAATTG
1 AGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACCTCATCCTCTTGAAAGTG
37436676 AAGTAGAGTTGGATAAAAGA
66 AAGTAGAGTTGGATAAAAGA
37436696 AGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACCTCATCCTCTTGAAAGTG
1 AGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACCTCATCCTCTTGAAAGTG
37436761 AAGTAGAGTTGGATAA
66 AAGTAGAGTTGGATAA
37436777 CGCGTCTTCA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 79 1.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (85 bp):
AGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACCTCATCCTCTTGAAAGTG
AAGTAGAGTTGGATAAAAGA
Found at i:37436805 original size:40 final size:39
Alignment explanation
Indices: 37436742--37436963 Score: 124
Period size: 31 Copynumber: 6.2 Consensus size: 39
37436732 GTAAGAGCAA
* * *
37436742 CCTCATCCTCTTGAAAGTGAAGTAGAGTTGGATAACGCGT
1 CCTCATCCCCTTGAAAGTAAAGTAGAG-TGGATAACACGT
* *
37436782 CTTCATCCCCTTGAAATTAAAGTAGAGTGGATAACACGT
1 CCTCATCCCCTTGAAAGTAAAGTAGAGTGGATAACACGT
* * * *
37436821 CCTCAT-CTC-TGAAATTGAAGTA-AG-AG-T-A-ACG-
1 CCTCATCCCCTTGAAAGTAAAGTAGAGTGGATAACACGT
* * *
37436852 --TCATCCCCTTAAAATTGAAGTAGAGTGGATAACACGT
1 CCTCATCCCCTTGAAAGTAAAGTAGAGTGGATAACACGT
* * * **
37436889 CCTCAT-CTC-TGAAATTGAAGTA-A---GAGCA-ACG-
1 CCTCATCCCCTTGAAAGTAAAGTAGAGTGGATAACACGT
* *
37436920 --TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGT
1 CCTCATCCCCTTGAAAGTAAAGTAGAGTGGATAACACGT
37436957 CCTCATC
1 CCTCATC
37436964 TCTGAAATTG
Statistics
Matches: 143, Mismatches: 19, Indels: 41
0.70 0.09 0.20
Matches are distributed among these distances:
29 8 0.06
30 4 0.03
31 25 0.17
32 9 0.06
33 5 0.03
34 2 0.01
35 5 0.03
36 9 0.06
37 24 0.17
38 4 0.03
39 25 0.17
40 23 0.16
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (39 bp):
CCTCATCCCCTTGAAAGTAAAGTAGAGTGGATAACACGT
Found at i:37436867 original size:68 final size:68
Alignment explanation
Indices: 37436784--37437430 Score: 1141
Period size: 68 Copynumber: 9.5 Consensus size: 68
37436774 TAACGCGTCT
* *
37436784 TCATCCCCTTGAAATTAAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGTA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37436849 ACG
66 ACG
*
37436852 TCATCCCCTTAAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37436917 ACG
66 ACG
37436920 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37436985 ACG
66 ACG
* * *
37436988 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTTAAGTAAGAGC
1 TCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGC
37437053 AACG
65 AACG
*
37437057 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37437122 ACG
66 ACG
37437125 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37437190 ACG
66 ACG
* *
37437193 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
1 TCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGC
37437258 AACG
65 AACG
37437262 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
37437327 ACG
66 ACG
* *
37437330 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
1 TCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGC
37437395 AACG
65 AACG
* *
37437399 TCATCCTCTTGAAATTGAAGTAAAGTTGGATA
1 TCATCCCCTTGAAATTGAAGTAGAG-TGGATA
37437431 GCAAAGTCCT
Statistics
Matches: 559, Mismatches: 17, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
68 355 0.64
69 204 0.36
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (68 bp):
TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
ACG
Found at i:37437086 original size:137 final size:136
Alignment explanation
Indices: 37436784--37437430 Score: 1150
Period size: 137 Copynumber: 4.7 Consensus size: 136
37436774 TAACGCGTCT
* * *
37436784 TCATCCCCTTGAAATTAAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGTA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCA
*
37436849 ACGTCATCCCCTTAAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGA
66 ACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGA
37436914 GCAACG
131 GCAACG
*
37436920 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCA
* * *
37436985 ACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTTAAGTAAG
66 ACGTCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAGTAAG
37437050 AGCAACG
130 AGCAACG
37437057 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCA
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCA
37437122 ACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGA
66 ACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGA
37437187 GCAACG
131 GCAACG
*
37437193 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
1 TCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
37437258 AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAG
65 AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAG
37437323 AGCAACG
130 AGCAACG
*
37437330 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
1 TCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
* *
37437395 AACGTCATCCTCTTGAAATTGAAGTAAAGTTGGATA
65 AACGTCATCCCCTTGAAATTGAAGTAGAG-TGGATA
37437431 GCAAAGTCCT
Statistics
Matches: 495, Mismatches: 13, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
136 154 0.31
137 335 0.68
138 6 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (136 bp):
TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCA
ACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGA
GCAACG
Found at i:37437161 original size:205 final size:205
Alignment explanation
Indices: 37436784--37437430 Score: 1188
Period size: 205 Copynumber: 3.2 Consensus size: 205
37436774 TAACGCGTCT
* * * *
37436784 TCATCCCCTTGAAATTAAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAGTAAGAGT
1 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
*
37436848 AACGTCATCCCCTTAAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAG
66 AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAG
37436913 AGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGT
131 AGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGT
37436978 AAGAGCAACG
196 AAGAGCAACG
*
37436988 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTTAAGTAAGAGC
1 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
*
37437053 AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAG
66 AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAG
37437118 AGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGT
131 AGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGT
37437183 AAGAGCAACG
196 AAGAGCAACG
37437193 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
1 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
37437258 AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAG
66 AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAG
* *
37437323 AGCAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAG
131 AGCAACGTCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCCTCATCTCTGAAATTGAAG
37437388 TAAGAGCAACG
195 TAAGAGCAACG
*
37437399 TCATCCTCTTGAAATTGAAGTAAAGTTGGATA
1 TCATCCTCTTGAAATTGAAGTAGAGTTGGATA
37437431 GCAAAGTCCT
Statistics
Matches: 429, Mismatches: 12, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
204 23 0.05
205 333 0.78
206 73 0.17
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (205 bp):
TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGTAAG
AGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCCTCATCTCTGAAATTGAAGT
AAGAGCAACG
Found at i:37437715 original size:16 final size:17
Alignment explanation
Indices: 37437696--37437738 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
37437686 TTAAATTGAT
37437696 TTTAAATTTA-TTTAAA
1 TTTAAATTTATTTTAAA
* *
37437712 TTTAGATTTATTTTTAA
1 TTTAAATTTATTTTAAA
*
37437729 TTTGAATTTA
1 TTTAAATTTA
37437739 AATTTAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:37437742 original size:12 final size:11
Alignment explanation
Indices: 37437686--37437747 Score: 54
Period size: 12 Copynumber: 5.5 Consensus size: 11
37437676 GACTTTTGAG
* *
37437686 TTAAATTGATT
1 TTAAATTTAAT
37437697 TTAAATTT-AT
1 TTAAATTTAAT
37437707 TTAAATTTAGAT
1 TTAAATTTA-AT
**
37437719 TTATTTTTAAT
1 TTAAATTTAAT
*
37437730 TTGAATTTAAAT
1 TTAAATTT-AAT
37437742 TTAAAT
1 TTAAAT
37437748 AAAAATTAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
10 9 0.22
11 14 0.35
12 17 0.43
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:37438215 original size:27 final size:25
Alignment explanation
Indices: 37438185--37438235 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 25
37438175 CCCGTGCACA
*
37438185 AAATCAATATACAACAACCTATTTTCG
1 AAATCAAAATACAA-AACC-ATTTTCG
37438212 AAATCAAAATACAAAACCATTTTC
1 AAATCAAAATACAAAACCATTTTC
37438236 CAGCAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 6 0.26
26 4 0.17
27 13 0.57
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (25 bp):
AAATCAAAATACAAAACCATTTTCG
Found at i:37438579 original size:20 final size:20
Alignment explanation
Indices: 37438538--37438580 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
37438528 CAATAAACAT
* *
37438538 TAATATTAAGTAATTATTAA
1 TAATATTAAGCAATTATAAA
37438558 TAATATTAA-CAATTAATAAA
1 TAATATTAAGCAATT-ATAAA
37438578 TAA
1 TAA
37438581 AAAGGGGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TAATATTAAGCAATTATAAA
Found at i:37438639 original size:6 final size:6
Alignment explanation
Indices: 37438630--37438656 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
37438620 TGCCACCGTC
37438630 GCCGGA GCCGGA GCCGGA GCCGGA GCC
1 GCCGGA GCCGGA GCCGGA GCCGGA GCC
37438657 CGTCACCGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.37, G:0.48, T:0.00
Consensus pattern (6 bp):
GCCGGA
Found at i:37439453 original size:162 final size:162
Alignment explanation
Indices: 37439274--37439587 Score: 429
Period size: 162 Copynumber: 1.9 Consensus size: 162
37439264 CTTTTCAATT
*
37439274 TAGTCCATTGACTGTTTGACTGTACCATGA-GCTGCCACGTGTC-TCTTTTTGGATTATTTATGC
1 TAGTCCATTGACTGTTTGACTGCACCA-GAGGCTGCCACGTGTCAT-TTTTTGGATTATTTATGC
** *
37439337 ATTTAGTCCTTTTTATTTTTTATTTGTTTTAATTTAATCCCCAAATCAAC-TTTATTTTAATTAC
64 ATTTAGTCCTTGGTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTA-TTTAATTAC
* *
37439401 GAAATTGG-CCTAATAATTTTTCAAGGTTTATAAAC
128 AAAATTGGTCC-AAAAATTTTTCAAGGTTTATAAAC
* * * * *
37439436 TAGTCCTTTGACTGTTTGACTGCACCAGAGGTTGCCACGTGTCATTTTTTTGATTATTTCTTCAT
1 TAGTCCATTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCATTTTTTGGATTATTTATGCAT
** * *
37439501 TTAGTCCTTGGTATTTTTAATTTGTTTTAATTTAATCCTTAAATCGACTTTTATTTAATTATAAA
66 TTAGTCCTTGGTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTATTTAATTACAAA
37439566 ATTGGTCCAAAAATTTTTCAAG
131 ATTGGTCCAAAAATTTTTCAAG
37439588 ATTTTCAAAT
Statistics
Matches: 133, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
161 2 0.02
162 124 0.93
163 7 0.05
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.47
Consensus pattern (162 bp):
TAGTCCATTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCATTTTTTGGATTATTTATGCAT
TTAGTCCTTGGTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTATTTAATTACAAA
ATTGGTCCAAAAATTTTTCAAGGTTTATAAAC
Found at i:37439649 original size:162 final size:161
Alignment explanation
Indices: 37439304--37439649 Score: 371
Period size: 162 Copynumber: 2.1 Consensus size: 161
37439294 TGTACCATGA
* * ** *
37439304 GCTGCCACGTGTCTCTTTTTGGATTATTTATGCATTTAGTCCTTTTTATTTTTTATTTGTTTTAA
1 GCTGCCACGTGTCACTTTTTTGATTATTTATGCATTTAGTCCTTGGTATTTTTAATTTGTTTTAA
* * *
37439369 TTTAATCCCCAAATCAACTTTATTTTAATTACGAAATTGGCCTAATAATTTTTCAAGGTTTATAA
66 TTTAATCCCCAAATCAACTTTATTTTAATTACAAAATTGGCCTAAAAATTTTTCAAGATTTATAA
* * *
37439434 ACTAGTCCTTTGACTGTTTGACTGCACCAGAG
131 ACTAGTCCCTTGACTGCTGGACT-CACCAGAG
* * * *
37439466 GTTGCCACGTGTCATTTTTTTGATTATTTCTTCATTTAGTCCTTGGTATTTTTAATTTGTTTTAA
1 GCTGCCACGTGTCACTTTTTTGATTATTTATGCATTTAGTCCTTGGTATTTTTAATTTGTTTTAA
** * *
37439531 TTTAATCCTTAAATCGACTTT-TATTTAATTATAAAATTGGTCC-AAAAATTTTTCAAGATTT-T
66 TTTAATCCCCAAATCAACTTTAT-TTTAATTACAAAATTGG-CCTAAAAATTTTTCAAGATTTAT
* * * *
37439593 CAAATTGGTCCCTTGACCT-CTGGA-T-ACCTGTGGG
129 -AAACTAGTCCCTTGA-CTGCTGGACTCACC--AGAG
37439627 GCTGCCACGTGTCACCTTTTTTG
1 GCTGCCACGTGTCA-CTTTTTTG
37439650 GTTTTATTAC
Statistics
Matches: 152, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
159 3 0.02
161 18 0.12
162 127 0.84
163 4 0.03
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (161 bp):
GCTGCCACGTGTCACTTTTTTGATTATTTATGCATTTAGTCCTTGGTATTTTTAATTTGTTTTAA
TTTAATCCCCAAATCAACTTTATTTTAATTACAAAATTGGCCTAAAAATTTTTCAAGATTTATAA
ACTAGTCCCTTGACTGCTGGACTCACCAGAG
Found at i:37439711 original size:30 final size:30
Alignment explanation
Indices: 37439669--37439828 Score: 184
Period size: 30 Copynumber: 5.4 Consensus size: 30
37439659 CTTTGAAAGC
* * *
37439669 CCCCTAAA-TTTTCCAAAATTATATTTTAA
1 CCCCAAAACTTTTCCAAAATTACATTTTGA
* *
37439698 CCCCGAAACTTTTCCAAAATTATATTTTGA
1 CCCCAAAACTTTTCCAAAATTACATTTTGA
*
37439728 CCCTAAAACTTTTCCAAAATTACATTTTGA
1 CCCCAAAACTTTTCCAAAATTACATTTTGA
*
37439758 CCCCAAAACTTTTCCAAAATTACATTTTGG
1 CCCCAAAACTTTTCCAAAATTACATTTTGA
* *
37439788 CCCTAAAAC--TTCCAAAAATTGCCATTTT-A
1 CCCCAAAACTTTTCC-AAAATT-ACATTTTGA
37439817 CCCCTAAAACTT
1 CCCC-AAAACTT
37439829 ACAAAATTCC
Statistics
Matches: 114, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
28 4 0.04
29 16 0.14
30 94 0.82
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.35
Consensus pattern (30 bp):
CCCCAAAACTTTTCCAAAATTACATTTTGA
Found at i:37439865 original size:30 final size:29
Alignment explanation
Indices: 37439831--37439934 Score: 84
Period size: 30 Copynumber: 3.5 Consensus size: 29
37439821 TAAAACTTAC
*
37439831 AAAATTCCGTTTTTAACCTCGATTTCACCG
1 AAAATTCC-TTTTTAACCCCGATTTCACCG
* * * ****
37439861 AAAATTACCATTTTACCCCCGA-ATCTTTT
1 AAAATT-CCTTTTTAACCCCGATTTCACCG
37439890 AAAATTCCATTTTTAACCCCGATTTCACCG
1 AAAATTCC-TTTTTAACCCCGATTTCACCG
*
37439920 AAAATTGCCATTTTA
1 AAAATT-CCTTTTTA
37439935 CCCTCGAATC
Statistics
Matches: 54, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
28 2 0.04
29 19 0.35
30 29 0.54
31 4 0.07
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.37
Consensus pattern (29 bp):
AAAATTCCTTTTTAACCCCGATTTCACCG
Found at i:37439865 original size:59 final size:58
Alignment explanation
Indices: 37439802--37439996 Score: 259
Period size: 59 Copynumber: 3.3 Consensus size: 58
37439792 AAAACTTCCA
* * * ** *
37439802 AAAATTGCCATTTTACCCCTAAAACTTACAAAATTCCGTTTTTAACCTCGATTTCACCG
1 AAAATTACCATTTTACCCCTGAATCTTTTAAAATTCCATTTTTAACC-CGATTTCACCG
*
37439861 AAAATTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTTAACCCCGATTTCACCG
1 AAAATTACCATTTTACCCCTGAATCTTTTAAAATTCCATTTTTAA-CCCGATTTCACCG
* *
37439920 AAAATTGCCATTTTA-CCCTCGAATCTTTTAAAATTCCATTTTTAATCCCGATTACACC-
1 AAAATTACCATTTTACCCCT-GAATCTTTTAAAATTCCATTTTTAA-CCCGATTTCACCG
37439978 AAAATTACCATTTTACCCC
1 AAAATTACCATTTTACCCC
37439997 CGGGTATCCA
Statistics
Matches: 121, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
58 17 0.14
59 102 0.84
60 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (58 bp):
AAAATTACCATTTTACCCCTGAATCTTTTAAAATTCCATTTTTAACCCGATTTCACCG
Found at i:37439903 original size:29 final size:29
Alignment explanation
Indices: 37439861--37439961 Score: 98
Period size: 29 Copynumber: 3.5 Consensus size: 29
37439851 GATTTCACCG
37439861 AAAATTACCATTTTACCCCCGAATCTTTT
1 AAAATTACCATTTTACCCCCGAATCTTTT
* * ****
37439890 AAAATT-CCATTTTTAACCCCGATTTCACCG
1 AAAATTACCA-TTTTACCCCCGA-ATCTTTT
* *
37439920 AAAATTGCCATTTTACCCTCGAATCTTTT
1 AAAATTACCATTTTACCCCCGAATCTTTT
37439949 AAAATT-CCATTTT
1 AAAATTACCATTTT
37439962 TAATCCCGAT
Statistics
Matches: 56, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
28 10 0.18
29 25 0.45
30 18 0.32
31 3 0.05
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.39
Consensus pattern (29 bp):
AAAATTACCATTTTACCCCCGAATCTTTT
Found at i:37439998 original size:29 final size:27
Alignment explanation
Indices: 37439830--37439998 Score: 88
Period size: 29 Copynumber: 5.8 Consensus size: 27
37439820 CTAAAACTTA
* *
37439830 CAAAATTCCGTTTTTAACCTCGATTTCAC
1 CAAAATTCC-ATTTTAACCCCGA-TTCAC
* * **
37439859 CGAAAATTACCATTTTACCCCCGAATCTTT
1 C-AAAATT-CCATTTTAACCCCGATTC-AC
*
37439889 TAAAATTCCATTTTTAACCCCGATTTCAC
1 CAAAATTCCA-TTTTAACCCCGA-TTCAC
* **
37439918 CGAAAATTGCCATTTT-ACCCTCGAATCTTT
1 C-AAAATT-CCATTTTAACCC-CGATTC-AC
* *
37439948 TAAAATTCCATTTTTAATCCCGATTACAC
1 CAAAATTCCA-TTTTAACCCCGATT-CAC
*
37439977 CAAAATTACCATTTTACCCCCG
1 CAAAATT-CCATTTTAACCCCG
37439999 GGTATCCATA
Statistics
Matches: 104, Mismatches: 23, Indels: 26
0.68 0.15 0.17
Matches are distributed among these distances:
28 6 0.06
29 55 0.53
30 38 0.37
31 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (27 bp):
CAAAATTCCATTTTAACCCCGATTCAC
Found at i:37441446 original size:16 final size:16
Alignment explanation
Indices: 37441425--37441459 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
37441415 CGTGATATTT
37441425 GTTTGAATTATTTTGA
1 GTTTGAATTATTTTGA
*
37441441 GTTTGAATTGTTTTGA
1 GTTTGAATTATTTTGA
37441457 GTT
1 GTT
37441460 CGAGTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (16 bp):
GTTTGAATTATTTTGA
Found at i:37441719 original size:29 final size:30
Alignment explanation
Indices: 37441686--37441755 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 30
37441676 TTCATGTACT
*
37441686 CTTTTTAAATTT-GAAATTTAGTCTCTATA
1 CTTTTTAAATTTAGAAATTTAGTCCCTATA
** * *
37441715 C-TTTTATTTTTAGAAATTTATTCCCTTTA
1 CTTTTTAAATTTAGAAATTTAGTCCCTATA
*
37441744 CTTTTCAAATTT
1 CTTTTTAAATTT
37441756 CTAAATTCAA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
28 8 0.26
29 16 0.52
30 7 0.23
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56
Consensus pattern (30 bp):
CTTTTTAAATTTAGAAATTTAGTCCCTATA
Found at i:37445879 original size:15 final size:16
Alignment explanation
Indices: 37445859--37445892 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
37445849 TGTTCAAAAT
*
37445859 AATTTATA-ATTTCAG
1 AATTTATATATTTAAG
37445874 AATTTATATATTTAAG
1 AATTTATATATTTAAG
37445890 AAT
1 AAT
37445893 GAATTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (16 bp):
AATTTATATATTTAAG
Found at i:37446497 original size:33 final size:30
Alignment explanation
Indices: 37446437--37446534 Score: 88
Period size: 33 Copynumber: 3.1 Consensus size: 30
37446427 AATTTATATT
* * *
37446437 TTATGTATTATTATATTAAATTGTTTAAATAA
1 TTATATATCATTAAATTAAATT-TTTAAAT-A
37446469 TTCATATATCATTAAATTAAATTATTTAAATA
1 TT-ATATATCATTAAATTAAATT-TTTAAATA
* * *
37446501 TTATTTATTATTATAATTAAAATTTTAAAATA
1 TTATATATCATTA-AATT-AAATTTTTAAATA
37446533 TT
1 TT
37446535 TTATGTGTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
31 9 0.16
32 18 0.32
33 29 0.52
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (30 bp):
TTATATATCATTAAATTAAATTTTTAAATA
Found at i:37450711 original size:11 final size:11
Alignment explanation
Indices: 37450697--37450742 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
37450687 ATATCCAAAC
37450697 AATAATAACAA
1 AATAATAACAA
37450708 AATAATAACAA
1 AATAATAACAA
* *
37450719 TATAATAATAA
1 AATAATAACAA
*
37450730 AATAATAGCAA
1 AATAATAACAA
37450741 AA
1 AA
37450743 CAATGAAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.22
Consensus pattern (11 bp):
AATAATAACAA
Found at i:37451222 original size:28 final size:29
Alignment explanation
Indices: 37451169--37451227 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
37451159 TATAGATTGG
*
37451169 ATTTTAAATTAGTCCTTAAACCTAAAAAT
1 ATTTTAAATTAGTCCTTAAAACTAAAAAT
* *
37451198 ATTTT-AATTGAGT-CTTAAAAGTAAAGAT
1 ATTTTAAATT-AGTCCTTAAAACTAAAAAT
37451226 AT
1 AT
37451228 CGTATGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 18 0.69
29 8 0.31
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (29 bp):
ATTTTAAATTAGTCCTTAAAACTAAAAAT
Found at i:37465657 original size:16 final size:17
Alignment explanation
Indices: 37465636--37465670 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
37465626 TGATATAATA
37465636 AATAAAA-ATGTTTTTG
1 AATAAAATATGTTTTTG
*
37465652 AATAAAATTTGTTTTTG
1 AATAAAATATGTTTTTG
37465669 AA
1 AA
37465671 CAAAGAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (17 bp):
AATAAAATATGTTTTTG
Found at i:37476171 original size:23 final size:23
Alignment explanation
Indices: 37476132--37476175 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
37476122 AAAAATTACC
*
37476132 AAAAAAATATGTTAATGACATGA
1 AAAAAAATATGTAAATGACATGA
37476155 AAAAAAATACTG-AAATGACAT
1 AAAAAAATA-TGTAAATGACAT
37476176 CAAATAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.59, C:0.07, G:0.11, T:0.23
Consensus pattern (23 bp):
AAAAAAATATGTAAATGACATGA
Found at i:37476488 original size:112 final size:112
Alignment explanation
Indices: 37476341--37476566 Score: 425
Period size: 112 Copynumber: 2.0 Consensus size: 112
37476331 AGACCGAAAG
37476341 AAATTGCTATGCCCCTTTTACCATCAAAACACGAGATGACTATTGCCTCACCTTATTATTTTGTT
1 AAATTGCTATGCCCCTTTTACCATCAAAACACGAGATGACTATTGCCTCACCTTATTATTTTGTT
*
37476406 ATTTATGGGTTGATTTATGATTTTGGTCCCTCTATTATTTTGAAACA
66 ATTTATGGATTGATTTATGATTTTGGTCCCTCTATTATTTTGAAACA
* *
37476453 AAATTGCTATGCCCCTTTTACTATCAAAACACGAGATGATTATTGCCTCACCTTATTATTTTGTT
1 AAATTGCTATGCCCCTTTTACCATCAAAACACGAGATGACTATTGCCTCACCTTATTATTTTGTT
37476518 ATTTATGGATTGATTTATGATTTTGGTCCCTCTATTATTTTGAAACA
66 ATTTATGGATTGATTTATGATTTTGGTCCCTCTATTATTTTGAAACA
37476565 AA
1 AA
37476567 GTCTTACAAG
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 111 1.00
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (112 bp):
AAATTGCTATGCCCCTTTTACCATCAAAACACGAGATGACTATTGCCTCACCTTATTATTTTGTT
ATTTATGGATTGATTTATGATTTTGGTCCCTCTATTATTTTGAAACA
Found at i:37477194 original size:27 final size:27
Alignment explanation
Indices: 37477164--37477229 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
37477154 CCTACCTGAC
* *
37477164 AGGCGGCACTAGTGGTG-CTTACCTGTT
1 AGGCGGCACCAATGGTGCCTT-CCTGTT
*
37477191 AGGCAGCACCAATGGTGCCTTCCTGTT
1 AGGCGGCACCAATGGTGCCTTCCTGTT
37477218 AGGCGGCACCAA
1 AGGCGGCACCAA
37477230 CCCGAATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 31 0.91
28 3 0.09
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (27 bp):
AGGCGGCACCAATGGTGCCTTCCTGTT
Found at i:37480204 original size:23 final size:23
Alignment explanation
Indices: 37480157--37480204 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
37480147 GATCTAAGGT
* *
37480157 AAAATAAAAGAAACTGAATTAAA
1 AAAATAAAAGAAAATGAACTAAA
37480180 AAAATAAAAGAAAATAGAACTAAA
1 AAAATAAAAGAAAAT-GAACTAAA
37480204 A
1 A
37480205 GAAGTAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.73, C:0.04, G:0.08, T:0.15
Consensus pattern (23 bp):
AAAATAAAAGAAAATGAACTAAA
Found at i:37481044 original size:19 final size:19
Alignment explanation
Indices: 37481020--37481062 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
37481010 AAATATAAAT
37481020 TAAATACAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
37481039 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
37481058 TAAAT
1 TAAAT
37481063 CCTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:37483173 original size:28 final size:28
Alignment explanation
Indices: 37483120--37483177 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
37483110 CATTTTTCTG
*
37483120 TTGGAATTAATTAAGTTTATGATTGAAT
1 TTGGAATTAATTAAGTTTATAATTGAAT
**
37483148 TTGGAATTAATTTTGTTTA-AATTTGAAT
1 TTGGAATTAATTAAGTTTATAA-TTGAAT
37483176 TT
1 TT
37483178 ATTTAATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.52
Consensus pattern (28 bp):
TTGGAATTAATTAAGTTTATAATTGAAT
Found at i:37483218 original size:26 final size:26
Alignment explanation
Indices: 37483169--37483218 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
37483159 TTTGTTTAAA
*
37483169 TTTGAATTTATTTAATAATTTTTATG
1 TTTGAATTTATTTAATAATGTTTATG
37483195 TTTGAATTTATTTAATGAA-GTTTA
1 TTTGAATTTATTTAAT-AATGTTTA
37483219 GCAAATGACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (26 bp):
TTTGAATTTATTTAATAATGTTTATG
Found at i:37486119 original size:17 final size:17
Alignment explanation
Indices: 37486097--37486130 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37486087 CTTACAATAA
*
37486097 TTAAATAATATTTAAAT
1 TTAAATAACATTTAAAT
37486114 TTAAATAACATTTAAAT
1 TTAAATAACATTTAAAT
37486131 GAATTTTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAATAACATTTAAAT
Found at i:37486893 original size:14 final size:14
Alignment explanation
Indices: 37486871--37486913 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
37486861 AAATATTGAA
37486871 AATAATTTTATATT
1 AATAATTTTATATT
*
37486885 AATACTTTTATATTT
1 AATAATTTTATA-TT
*
37486900 TATAATTTTTATAT
1 AATAA-TTTTATAT
37486914 ATAAAATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 11 0.46
15 6 0.25
16 7 0.29
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (14 bp):
AATAATTTTATATT
Found at i:37490859 original size:15 final size:15
Alignment explanation
Indices: 37490835--37490864 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37490825 ATATGACGAA
*
37490835 TTAATGAAGTATTAT
1 TTAATAAAGTATTAT
37490850 TTAATAAAGTATTAT
1 TTAATAAAGTATTAT
37490865 ATAGATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (15 bp):
TTAATAAAGTATTAT
Found at i:37493006 original size:24 final size:25
Alignment explanation
Indices: 37492952--37493008 Score: 62
Period size: 28 Copynumber: 2.2 Consensus size: 25
37492942 TGAAATTACT
37492952 TATAATTCCTTCTCAATCTATAATTCGA
1 TATAATTCCTTCTCAATCTATAA-T--A
* *
37492980 TATAATTCTTTCTCAATTTATAA-A
1 TATAATTCCTTCTCAATCTATAATA
37493004 TATAA
1 TATAA
37493009 AATATTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 6 0.22
28 21 0.78
ACGTcount: A:0.37, C:0.16, G:0.02, T:0.46
Consensus pattern (25 bp):
TATAATTCCTTCTCAATCTATAATA
Found at i:37508874 original size:28 final size:29
Alignment explanation
Indices: 37508843--37508903 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
37508833 TCAAATTTAA
37508843 TTTTAATGTT-CAATTTGATACTTGAATT
1 TTTTAATGTTACAATTTGATACTTGAATT
** * *
37508871 TTTTTTTGTTATAATTTGATACTTGAGTT
1 TTTTAATGTTACAATTTGATACTTGAATT
37508900 TTTT
1 TTTT
37508904 TCAATTTGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 8 0.29
29 20 0.71
ACGTcount: A:0.23, C:0.05, G:0.11, T:0.61
Consensus pattern (29 bp):
TTTTAATGTTACAATTTGATACTTGAATT
Found at i:37509016 original size:16 final size:17
Alignment explanation
Indices: 37508983--37509020 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
37508973 AAATTATTAA
* *
37508983 AAAAAATTAAAATTTAT
1 AAAAAATGAAAATATAT
37509000 AAAAAATGAAAA-ATAT
1 AAAAAATGAAAATATAT
37509016 AAAAA
1 AAAAA
37509021 GTGTGAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
AAAAAATGAAAATATAT
Found at i:37515745 original size:26 final size:26
Alignment explanation
Indices: 37515702--37515759 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
37515692 TAAGATGATT
*
37515702 ATATAAAAAAATTTAATAAATAAAA-A
1 ATATAAAAAAATTAAAT-AATAAAATA
** *
37515728 ATATAAAATTATTAAATATTAAAATA
1 ATATAAAAAAATTAAATAATAAAATA
37515754 ATATAA
1 ATATAA
37515760 TATAAATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (26 bp):
ATATAAAAAAATTAAATAATAAAATA
Found at i:37526527 original size:2 final size:2
Alignment explanation
Indices: 37526522--37526552 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
37526512 TTAATATAAT
37526522 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37526553 TACTTGTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37529761 original size:15 final size:16
Alignment explanation
Indices: 37529741--37529771 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
37529731 AAGAATATAG
37529741 ATTACCAAAT-ATAAA
1 ATTACCAAATAATAAA
37529756 ATTACCAAATAATAAA
1 ATTACCAAATAATAAA
37529772 TAAAATAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (16 bp):
ATTACCAAATAATAAA
Found at i:37537184 original size:3 final size:3
Alignment explanation
Indices: 37537176--37537207 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
37537166 AAACTTTGAG
37537176 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
37537208 ATGGACGTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:37537656 original size:13 final size:13
Alignment explanation
Indices: 37537640--37537664 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37537630 AAATTCATTT
37537640 TTTTATTTTTAAC
1 TTTTATTTTTAAC
37537653 TTTTATTTTTAA
1 TTTTATTTTTAA
37537665 TAAATTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTATTTTTAAC
Found at i:37537863 original size:13 final size:15
Alignment explanation
Indices: 37537847--37537882 Score: 58
Period size: 13 Copynumber: 2.5 Consensus size: 15
37537837 TTTTGAATAA
37537847 TTTTATTATA-A-AT
1 TTTTATTATATATAT
37537860 TTTTATTATATATAT
1 TTTTATTATATATAT
37537875 TTTTATTA
1 TTTTATTA
37537883 ACATATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.48
14 1 0.05
15 10 0.48
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTATTATATATAT
Found at i:37537894 original size:15 final size:15
Alignment explanation
Indices: 37537847--37537894 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
37537837 TTTTGAATAA
37537847 TTTTATTATA-A-AT
1 TTTTATTATACATAT
*
37537860 TTTTATTATATATAT
1 TTTTATTATACATAT
37537875 TTTTATTA-ACATAT
1 TTTTATTATACATAT
37537889 TATTTA
1 T-TTTA
37537895 AAATTATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 10 0.32
14 7 0.23
15 14 0.45
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTATTATACATAT
Found at i:37538319 original size:10 final size:10
Alignment explanation
Indices: 37538306--37538334 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
37538296 CCGCCTCACC
37538306 TCTCCTCTCG
1 TCTCCTCTCG
37538316 TCTCCTCTCG
1 TCTCCTCTCG
37538326 TCTCCTCTC
1 TCTCCTCTC
37538335 CTACCCATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.52, G:0.07, T:0.41
Consensus pattern (10 bp):
TCTCCTCTCG
Found at i:37541751 original size:25 final size:23
Alignment explanation
Indices: 37541723--37541768 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
37541713 GTTGGATCCA
37541723 AATTAAATTCTAAAAAGATAATTTG
1 AATTAAA-TCTAAAAA-ATAATTTG
*
37541748 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
37541769 CCCTAATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTTG
Found at i:37545831 original size:21 final size:21
Alignment explanation
Indices: 37545794--37545833 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
37545784 TGTATATTAG
*
37545794 GCTTTCTTGAAAGTAAAGTTC
1 GCTTTCTGGAAAGTAAAGTTC
37545815 GCTTTCTGGCAAA-TAAAGT
1 GCTTTCTGG-AAAGTAAAGT
37545834 GATCTAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (21 bp):
GCTTTCTGGAAAGTAAAGTTC
Found at i:37553248 original size:49 final size:49
Alignment explanation
Indices: 37553192--37553289 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
37553182 AAACCCTTTT
37553192 GCAACCAACTCCTCTCATGCTAACTGCAGAAAGCAGACCAAAAGAATGG
1 GCAACCAACTCCTCTCATGCTAACTGCAGAAAGCAGACCAAAAGAATGG
37553241 GCAACCAACTCCTCTCATGCTAACTGCAGAAAGCAGACCAAAAGAATGG
1 GCAACCAACTCCTCTCATGCTAACTGCAGAAAGCAGACCAAAAGAATGG
37553290 CTACTGAAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.39, C:0.29, G:0.18, T:0.14
Consensus pattern (49 bp):
GCAACCAACTCCTCTCATGCTAACTGCAGAAAGCAGACCAAAAGAATGG
Found at i:37566623 original size:7 final size:7
Alignment explanation
Indices: 37566611--37566636 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37566601 AAAATGACTG
37566611 AATTTAA
1 AATTTAA
37566618 AATTTAA
1 AATTTAA
37566625 AATTTAA
1 AATTTAA
37566632 AATTT
1 AATTT
37566637 TCTGAGTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
AATTTAA
Found at i:37575091 original size:17 final size:18
Alignment explanation
Indices: 37575069--37575115 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
37575059 AACAATATAT
*
37575069 AAAATGTAAATAATTC-A
1 AAAATGTAAAAAATTCTA
*
37575086 AAAATGAAAAAAAATTCTA
1 AAAATG-TAAAAAATTCTA
37575105 AAAAT-TAAAAA
1 AAAATGTAAAAA
37575116 GCCATATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 11 0.44
18 8 0.32
19 6 0.24
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.23
Consensus pattern (18 bp):
AAAATGTAAAAAATTCTA
Found at i:37575114 original size:18 final size:18
Alignment explanation
Indices: 37575080--37575115 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
37575070 AAATGTAAAT
37575080 AATTCAAAAATGAAAAAA
1 AATTCAAAAATGAAAAAA
*
37575098 AATTCTAAAAATTAAAAA
1 AATTC-AAAAATGAAAAA
37575116 GCCATATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.69, C:0.06, G:0.03, T:0.22
Consensus pattern (18 bp):
AATTCAAAAATGAAAAAA
Found at i:37576132 original size:15 final size:13
Alignment explanation
Indices: 37576101--37576126 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37576091 ATGGATAGAA
37576101 ATAAAATATTTTT
1 ATAAAATATTTTT
37576114 ATAAAATATTTTT
1 ATAAAATATTTTT
37576127 TTATAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATAAAATATTTTT
Found at i:37576369 original size:23 final size:23
Alignment explanation
Indices: 37576343--37576431 Score: 72
Period size: 23 Copynumber: 3.7 Consensus size: 23
37576333 TTTATATAAC
37576343 TTAATCGAACATGTTCACGAACA
1 TTAATCGAACATGTTCACGAACA
* * * *
37576366 TTAAACAAACATGTTCATGAATA
1 TTAATCGAACATGTTCACGAACA
*
37576389 TATAAGT-GAACATGTTCACAAACA
1 T-TAA-TCGAACATGTTCACGAACA
* *
37576413 ATATTCATGAACATGTTCA
1 TTAATC--GAACATGTTCA
37576432 TAAACAATGT
Statistics
Matches: 50, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
22 1 0.02
23 22 0.44
24 16 0.32
25 11 0.22
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (23 bp):
TTAATCGAACATGTTCACGAACA
Found at i:37576441 original size:13 final size:13
Alignment explanation
Indices: 37576400--37576442 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
37576390 ATAAGTGAAC
*
37576400 ATGTTCACAAACA
1 ATGTTCATAAACA
* *
37576413 ATATTCATGAAC-
1 ATGTTCATAAACA
37576425 ATGTTCATAAACA
1 ATGTTCATAAACA
37576438 ATGTT
1 ATGTT
37576443 AAAGAATAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (13 bp):
ATGTTCATAAACA
Found at i:37576933 original size:28 final size:27
Alignment explanation
Indices: 37576880--37576933 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
37576870 TATGTAAAAG
**
37576880 AAAAAAAACATAGGTATCAATTTGAAT
1 AAAAAAAACATAGGTATCAAAATGAAT
37576907 AAAAAAAAGCATAGGTATCAAAATGAA
1 AAAAAAAA-CATAGGTATCAAAATGAA
37576934 CATAGAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.59, C:0.07, G:0.13, T:0.20
Consensus pattern (27 bp):
AAAAAAAACATAGGTATCAAAATGAAT
Found at i:37582495 original size:29 final size:30
Alignment explanation
Indices: 37582463--37582520 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
37582453 TTAGGTGTAT
* *
37582463 AATTGTACA-AAATTAAAGTTTATGTATCA
1 AATTGCACATAAATTAAAGTTCATGTATCA
37582492 AATTGCACATTAAATTAAAGTTCATGTAT
1 AATTGCACA-TAAATTAAAGTTCATGTAT
37582521 AGATTTGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 8 0.32
31 17 0.68
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.38
Consensus pattern (30 bp):
AATTGCACATAAATTAAAGTTCATGTATCA
Found at i:37583676 original size:16 final size:17
Alignment explanation
Indices: 37583655--37583693 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
37583645 ATTAGCTAGT
37583655 ACTTAAATAAAT-TTTA
1 ACTTAAATAAATATTTA
* *
37583671 ACTTAAATCAATATTTC
1 ACTTAAATAAATATTTA
37583688 ACTTAA
1 ACTTAA
37583694 TGTAAGACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (17 bp):
ACTTAAATAAATATTTA
Found at i:37585947 original size:51 final size:51
Alignment explanation
Indices: 37585866--37586058 Score: 296
Period size: 51 Copynumber: 3.8 Consensus size: 51
37585856 GCTATAAACG
*
37585866 AAAGAGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
1 AAAG-GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTATGGATT
* *
37585918 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATAAATCTTTTATGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTATGGATT
* * * *
37585969 AAAGGTTCGATGACTAAGTGTCATCGTGAGTAAATGAATCCATGATGAATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTATGGATT
* *
37586020 AAAGGTCCGATGACTCAGTGTCATCGTGAGTATATGAAT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAAT
37586059 TTCTATACGA
Statistics
Matches: 129, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
51 125 0.97
52 4 0.03
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.30
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTATGGATT
Found at i:37589938 original size:25 final size:24
Alignment explanation
Indices: 37589901--37589947 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
37589891 ACACTATAAA
* *
37589901 TTTTATTAGATATACTGATATTATC
1 TTTTATAAGATATA-TAATATTATC
*
37589926 TTTTATAATATATATAATATTA
1 TTTTATAAGATATATAATATTA
37589948 ATCTCATGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 7 0.37
25 12 0.63
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (24 bp):
TTTTATAAGATATATAATATTATC
Found at i:37591618 original size:20 final size:19
Alignment explanation
Indices: 37591584--37591621 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
37591574 TTTAAATACA
*
37591584 ATTAAATTGAAATATAAAG
1 ATTAAATTCAAATATAAAG
37591603 ATTAAATCTCAAATATAAA
1 ATTAAAT-TCAAATATAAA
37591622 CATAGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (19 bp):
ATTAAATTCAAATATAAAG
Found at i:37595322 original size:17 final size:16
Alignment explanation
Indices: 37595299--37595339 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
37595289 ATAGTAAAAA
37595299 TATAATTTTAT-TATT
1 TATAATTTTATATATT
37595314 T-TAATAATTTATATATT
1 TATAAT--TTTATATATT
37595331 TATAATTTT
1 TATAATTTT
37595340 TAAAAGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
14 4 0.18
15 1 0.05
16 8 0.36
17 5 0.23
18 4 0.18
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATAATTTTATATATT
Found at i:37595380 original size:29 final size:31
Alignment explanation
Indices: 37595329--37595389 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 31
37595319 AATTTATATA
*
37595329 TTTATAATTTTTAAAAGA-TTAAATTAAATT
1 TTTATAATTTTTAAAAGAGTAAAATTAAATT
* * *
37595359 TTTAT-ATTTTTAAGAGGGTAAAATTTAATT
1 TTTATAATTTTTAAAAGAGTAAAATTAAATT
37595389 T
1 T
37595390 CACTTTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (31 bp):
TTTATAATTTTTAAAAGAGTAAAATTAAATT
Found at i:37597040 original size:13 final size:13
Alignment explanation
Indices: 37597000--37597033 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
37596990 TGGTTTTATC
* *
37597000 AATTAATTTTATT
1 AATTGATTTGATT
37597013 AATTGATTTGATT
1 AATTGATTTGATT
37597026 AATTGATT
1 AATTGATT
37597034 CTGTTAACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (13 bp):
AATTGATTTGATT
Found at i:37604609 original size:69 final size:68
Alignment explanation
Indices: 37604482--37604689 Score: 278
Period size: 69 Copynumber: 3.0 Consensus size: 68
37604472 GCCTCATATA
* *
37604482 CTTCTTTCCCCATTAAATCAATACCCACTTTATCCGTGGCCTCCACATCACAAATGGTTGTATCA
1 CTTCTTGCCCCATTAAATCAATACCCACTTTATCCGTGG-CTCCACATCACAAGTGGTTGTATCA
37604547 TGTT
65 TGTT
* ** *
37604551 CTTTTTGCCTTATTAAATCAATTCCCACTTTATCCGTGGACTCCACATCACAAGTGGTTGTGA-C
1 CTTCTTGCCCCATTAAATCAATACCCACTTTATCCGTGG-CTCCACATCACAAGTGGTTGT-ATC
37604615 ATGTT
64 ATGTT
*
37604620 CTTCTTGCCCCATTAACAT-AATACCCACTTTATCCGTGGCCCTCACATCACAAGTGG-TGTTAT
1 CTTCTTGCCCCATTAA-ATCAATACCCACTTTATCCGTGGCTC-CACATCACAAGTGGTTG-TAT
37604683 CATGTT
63 CATGTT
37604689 C
1 C
37604690 CATCATTGAC
Statistics
Matches: 122, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
68 5 0.04
69 114 0.93
70 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (68 bp):
CTTCTTGCCCCATTAAATCAATACCCACTTTATCCGTGGCTCCACATCACAAGTGGTTGTATCAT
GTT
Found at i:37621324 original size:19 final size:21
Alignment explanation
Indices: 37621300--37621340 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
37621290 TTAAGAAAAA
*
37621300 TTTTAGTT-GGTTGAT-TGAG
1 TTTTAGTTCGATTGATATGAG
37621319 TTTTAGTTCGATTGATATGAG
1 TTTTAGTTCGATTGATATGAG
37621340 T
1 T
37621341 ATTATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 6 0.32
21 5 0.26
ACGTcount: A:0.20, C:0.02, G:0.27, T:0.51
Consensus pattern (21 bp):
TTTTAGTTCGATTGATATGAG
Found at i:37634184 original size:19 final size:19
Alignment explanation
Indices: 37634160--37634199 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
37634150 TTTCTTTTAT
37634160 ATAAAATGA-AAAAATATAA
1 ATAAAAT-ACAAAAATATAA
*
37634179 ATAAAATACATAAATATAA
1 ATAAAATACAAAAATATAA
37634198 AT
1 AT
37634200 TATTTGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (19 bp):
ATAAAATACAAAAATATAA
Found at i:37647029 original size:31 final size:31
Alignment explanation
Indices: 37646991--37647080 Score: 89
Period size: 34 Copynumber: 2.9 Consensus size: 31
37646981 TTATCAGCAA
37646991 ATTTTTATAATAATAAAATAATAATTTTATT
1 ATTTTTATAATAATAAAATAATAATTTTATT
* *
37647022 ATTTTTATAATTTATATTAAATCAA-ATTTTTATT
1 ATTTTTATAA--TA-ATAAAAT-AATAATTTTATT
37647056 ATTTTTA-AA-AATTAAAAT-ATAATTT
1 ATTTTTATAATAA-TAAAATAATAATTT
37647081 AATCTTCATT
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
28 1 0.02
29 5 0.10
30 6 0.12
31 10 0.20
33 4 0.08
34 21 0.43
35 2 0.04
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (31 bp):
ATTTTTATAATAATAAAATAATAATTTTATT
Found at i:37648538 original size:77 final size:77
Alignment explanation
Indices: 37648298--37649186 Score: 977
Period size: 77 Copynumber: 11.2 Consensus size: 77
37648288 TTCTTTCTTC
* * * *
37648298 AAACGAAGTTGTTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATTCTCATCGAGTGTG
1 AAACGGAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
*
37648363 CTTTCTT-TCTTC
66 CTTTCTTCT-TTA
** * * * *
37648375 AAACAAAGTTATTAGCAAATTTGGATGTAAATTTTACATGTCACTCCAAAATCCGCATTTAGTGT
1 AAACGGAGTTATTAGCAAATTTGGATGTAAA-TTTGCATGTGACTCCAAAATCCTCATCTAGTGT
* *
37648440 CCTTTCTT-TCTTC
65 GCTTTCTTCT-TTA
* *
37648453 AAAGGGAGTTGTTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
1 AAACGGAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
37648518 CTTTCTTCTTTA
66 CTTTCTTCTTTA
*
37648530 AAACGGAGTTATTAGCAAATTTGGATGTAAAAATCTGCATGTGACTCCAAAATCCTCATCTAGTG
1 AAACGGAGTTATTAGCAAATTTGGATGT--AAATTTGCATGTGACTCCAAAATCCTCATCTAGTG
* * * *
37648595 TTC-CTCATCTAGTGTGC
64 TGCTTTCTTCT--T-T-A
*** **** ** * * * * **
37648612 TTTCTTCCTTAAAACGGAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCT
1 AAACGGAGTTATTA-GCA--AATTTG--GA--T-G-TAA--ATTTGCATGTGACTCCAAAATCCT
*
37648677 CATCTAGTGTGCTTTCTT-TCTTC
55 CATCTAGTGTGCTTTCTTCT-TTA
**
37648700 AAACAAAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
1 AAACGGAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
37648765 CTTTCTTCTTTA
66 CTTTCTTCTTTA
* *
37648777 AAACGGAGTTATTAGTAAATTTGGATAAATTTGGATGTAAATTTGCATGTGAATCCAAAATCCTC
1 AAACGGAGTTA-T--T--A----G-CAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTC
37648842 ATCTAGTGTGCTTTCTTCTTTA
56 ATCTAGTGTGCTTTCTTCTTTA
37648864 AAACGGAGTTATTAGCAAATTTGGATGTAAAAATTTGCATGTGACTCCAAAATCCTCATCTAGTG
1 AAACGGAGTTATTAGCAAATTTGGATGT--AAATTTGCATGTGACTCCAAAATCCTCATCTAGTG
*
37648929 TGCTTTCTTCCTTA
64 TGCTTTCTTCTTTA
37648943 AAACGGAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
1 AAACGGAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
* *
37649008 CTTTCTTCCTTC
66 CTTTCTTCTTTA
*
37649020 AAAC-AAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
1 AAACGGAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
37649084 CTTTCTTTCTTCATA
66 CTTTC-TTCTT--TA
*
37649099 TAA---AGTT-TTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
1 AAACGGAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
37649160 CTTTCTTCTTTA
66 CTTTCTTCTTTA
*
37649172 AAGCGGAGTTATTAG
1 AAACGGAGTTATTAG
37649187 ATGTGACTCC
Statistics
Matches: 696, Mismatches: 76, Indels: 80
0.82 0.09 0.09
Matches are distributed among these distances:
73 3 0.00
75 5 0.01
76 127 0.18
77 222 0.32
78 75 0.11
79 115 0.17
80 3 0.00
81 2 0.00
82 7 0.01
83 3 0.00
84 1 0.00
85 8 0.01
86 2 0.00
87 74 0.11
88 6 0.01
89 2 0.00
90 2 0.00
91 36 0.05
92 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.37
Consensus pattern (77 bp):
AAACGGAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTG
CTTTCTTCTTTA
Found at i:37648601 original size:14 final size:14
Alignment explanation
Indices: 37648582--37648609 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37648572 GACTCCAAAA
37648582 TCCTCATCTAGTGT
1 TCCTCATCTAGTGT
37648596 TCCTCATCTAGTGT
1 TCCTCATCTAGTGT
37648610 GCTTTCTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.14, T:0.43
Consensus pattern (14 bp):
TCCTCATCTAGTGT
Found at i:37648932 original size:79 final size:77
Alignment explanation
Indices: 37648803--37649186 Score: 625
Period size: 76 Copynumber: 5.0 Consensus size: 77
37648793 AAATTTGGAT
*
37648803 AAATTTGGATGTAAATTTGCATGTGAATCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAAAC
1 AAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAAAC
37648868 GGAGTTATTAGC
66 GGAGTTATTAGC
*
37648880 AAATTTGGATGTAAAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCCTTAAA
1 AAATTTGGATGT--AAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAA
37648945 ACGGAGTTATTAGC
64 ACGGAGTTATTAGC
* *
37648959 AAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCCTTCAAAC
1 AAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAAAC
*
37649024 -AAGTTATTAGC
66 GGAGTTATTAGC
*
37649035 AAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTTCTTCATAT
1 AAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTC-TTCTT--TAA
37649100 AA---AGTT-TTAGC
63 AACGGAGTTATTAGC
*
37649111 AAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAAGC
1 AAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAAAC
37649176 GGAGTTATTAG
66 GGAGTTATTAG
37649187 ATGTGACTCC
Statistics
Matches: 289, Mismatches: 9, Indels: 18
0.91 0.03 0.06
Matches are distributed among these distances:
73 3 0.01
75 5 0.02
76 127 0.44
77 76 0.26
79 78 0.27
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (77 bp):
AAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAAAC
GGAGTTATTAGC
Found at i:37649217 original size:56 final size:56
Alignment explanation
Indices: 37649131--37649242 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
37649121 GTAAATTTGC
*
37649131 ATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAAGCGGAGTTATTAG
1 ATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAAACGGAGTTATTAG
*
37649187 ATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAAACGGGGTTATTAG
1 ATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAAACGGAGTTATTAG
37649243 CAAATTTGGA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38
Consensus pattern (56 bp):
ATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTCTTTAAAACGGAGTTATTAG
Found at i:37649299 original size:14 final size:14
Alignment explanation
Indices: 37649280--37649307 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37649270 GACTCCAAAA
37649280 TCCTCATCTAGTGT
1 TCCTCATCTAGTGT
37649294 TCCTCATCTAGTGT
1 TCCTCATCTAGTGT
37649308 GCTTTCTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.14, T:0.43
Consensus pattern (14 bp):
TCCTCATCTAGTGT
Found at i:37649390 original size:77 final size:77
Alignment explanation
Indices: 37649294--37649604 Score: 448
Period size: 77 Copynumber: 4.2 Consensus size: 77
37649284 CATCTAGTGT
* **
37649294 TCCTCATCTAGTGTGCTTTCTTCCTTAAAACGGAGTTATTAGCAAATTTGGATGTAAATTTGCAT
1 TCCTCATCTAGTGTGCTTTCTTCCTTCAAACAAAGTTATTAGCAAATTTGGATGTAAATTTGCAT
*
37649359 GTGACTTCAAAA
66 GTGACTCCAAAA
*
37649371 TCCTCATCTAGTGTGCTTTCTTTCTTCAAACAAAGTTATTAGCAAATTTGGATGTAAATTTGCAT
1 TCCTCATCTAGTGTGCTTTCTTCCTTCAAACAAAGTTATTAGCAAATTTGGATGTAAATTTGCAT
37649436 GTGACTCCAAAA
66 GTGACTCCAAAA
37649448 TCCTCATCTAGTGTGCTTTCTTCCTT----C--A---A--A-CAAATTTGGATGTAAATTTGCAT
1 TCCTCATCTAGTGTGCTTTCTTCCTTCAAACAAAGTTATTAGCAAATTTGGATGTAAATTTGCAT
37649501 GTGACTCCAAAA
66 GTGACTCCAAAA
* ***
37649513 TCCTCATCTAGTGTGCTTTCTTTCTTCATGTAAAGTTATTAGCAAATTTGGATGTAAATTTGCAT
1 TCCTCATCTAGTGTGCTTTCTTCCTTCAAACAAAGTTATTAGCAAATTTGGATGTAAATTTGCAT
37649578 GTGACTCCAAAA
66 GTGACTCCAAAA
*
37649590 TCCTCAACTAGTGTG
1 TCCTCATCTAGTGTG
37649605 TTCTCAATTG
Statistics
Matches: 213, Mismatches: 9, Indels: 24
0.87 0.04 0.10
Matches are distributed among these distances:
65 60 0.28
66 1 0.00
68 1 0.00
71 2 0.01
73 1 0.00
74 1 0.00
76 1 0.00
77 146 0.69
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (77 bp):
TCCTCATCTAGTGTGCTTTCTTCCTTCAAACAAAGTTATTAGCAAATTTGGATGTAAATTTGCAT
GTGACTCCAAAA
Found at i:37649592 original size:142 final size:142
Alignment explanation
Indices: 37649336--37649604 Score: 493
Period size: 142 Copynumber: 1.9 Consensus size: 142
37649326 GAGTTATTAG
*
37649336 CAAATTTGGATGTAAATTTGCATGTGACTTCAAAATCCTCATCTAGTGTGCTTTCTTTCTTCAAA
1 CAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTTCTTCAAA
*
37649401 CAAAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTT
66 CAAAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCAACTAGTGTGCTT
37649466 TCTTCCTTCAAA
131 TCTTCCTTCAAA
**
37649478 CAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTTCTTCATG
1 CAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTTCTTCAAA
*
37649543 TAAAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCAACTAGTGTG
66 CAAAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCAACTAGTGTG
37649605 TTCTCAATTG
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
142 122 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (142 bp):
CAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCATCTAGTGTGCTTTCTTTCTTCAAA
CAAAGTTATTAGCAAATTTGGATGTAAATTTGCATGTGACTCCAAAATCCTCAACTAGTGTGCTT
TCTTCCTTCAAA
Found at i:37650564 original size:29 final size:30
Alignment explanation
Indices: 37650543--37650800 Score: 93
Period size: 29 Copynumber: 8.9 Consensus size: 30
37650533 TTTTGGATAC
37650543 TCGAGGGCAAAATGGTAA-TTTTGGACTCT
1 TCGAGGGCAAAATGGTAATTTTTGGACTCT
* * ** *
37650572 TGGGGGGCAAAATGGTAATTTTTTAAAGT-T
1 TCGAGGGCAAAATGGTAA-TTTTTGGACTCT
* * * *
37650602 TTG-GGGTCAAAATGG-AGTTTTTGAAC-AT
1 TCGAGGG-CAAAATGGTAATTTTTGGACTCT
* * * *
37650630 TCGGGGGTAAAATGGTAATTTTTGAAAGT-T
1 TCGAGGGCAAAATGGTAATTTTTG-GACTCT
* * * *
37650660 TTGTGGTCAAAAATGG-AACTTTTGGACAT-T
1 TCGAGGGC-AAAATGGTAATTTTTGGAC-TCT
*
37650690 T-G-GGGTCAAAAATGG-AATTTTTGGAAT-T
1 TCGAGGG-C-AAAATGGTAATTTTTGGACTCT
* * *
37650718 TTGAGGGTAAAAT-GTAATTTTTGGAAGT-T
1 TCGAGGGCAAAATGGTAATTTTTGG-ACTCT
*
37650747 TCGAGGTCAAAAT-GTAATTTTTGGAACT-T
1 TCGAGGGCAAAATGGTAATTTTTGG-ACTCT
*
37650776 TCG-GGGTCAAAAT-ATAATTTTTGGA
1 TCGAGGG-CAAAATGGTAATTTTTGGA
37650801 TAGTTTAGGG
Statistics
Matches: 182, Mismatches: 31, Indels: 33
0.74 0.13 0.13
Matches are distributed among these distances:
27 1 0.01
28 39 0.21
29 98 0.54
30 31 0.17
31 13 0.07
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (30 bp):
TCGAGGGCAAAATGGTAATTTTTGGACTCT
Found at i:37650624 original size:59 final size:57
Alignment explanation
Indices: 37650550--37650800 Score: 215
Period size: 58 Copynumber: 4.3 Consensus size: 57
37650540 TACTCGAGGG
*
37650550 CAAAATGGTAA-TTTTGGACTCTTGGGGGGCAAAATGGTAATTTTTTAAAGTTTTGGGGT
1 CAAAATGG-AATTTTTGGACT-TT-GGGGGCAAAATGGTAATTTTTGAAAGTTTTGGGGT
* * * * *
37650609 CAAAATGGAGTTTTTGAACATTCGGGGGTAAAATGGTAATTTTTGAAAGTTTTGTGGT
1 CAAAATGGAATTTTTGGAC-TTTGGGGGCAAAATGGTAATTTTTGAAAGTTTTGGGGT
* * *
37650667 CAAAAATGGAACTTTTGGACATTTGGGGTCAAAAATGG-AATTTTTGGAA-TTTTGAGGGT
1 C-AAAATGGAATTTTTGGAC-TTTGGGGGC-AAAATGGTAATTTTTGAAAGTTTTG-GGGT
* * * * * * *
37650726 -AAAATGTAATTTTTGGAAGTTTCGAGGTCAAAAT-GTAATTTTTGGAACTTTCGGGGT
1 CAAAATGGAATTTTTGG-ACTTT-GGGGGCAAAATGGTAATTTTTGAAAGTTTTGGGGT
**
37650783 CAAAATATAATTTTTGGA
1 CAAAATGGAATTTTTGGA
37650801 TAGTTTAGGG
Statistics
Matches: 162, Mismatches: 20, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
56 1 0.01
57 38 0.23
58 64 0.40
59 51 0.31
60 8 0.05
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (57 bp):
CAAAATGGAATTTTTGGACTTTGGGGGCAAAATGGTAATTTTTGAAAGTTTTGGGGT
Found at i:37650635 original size:28 final size:29
Alignment explanation
Indices: 37650604--37650800 Score: 152
Period size: 29 Copynumber: 6.8 Consensus size: 29
37650594 TTAAAGTTTT
*
37650604 GGGGTCAAAATGGAGTTTTT-GAACATTC
1 GGGGTCAAAATGGAATTTTTGGAACATTC
* ** *
37650632 GGGGGT-AAAATGGTAATTTTTGAAAGTTTT
1 -GGGGTCAAAATGG-AATTTTTGGAACATTC
* * *
37650662 GTGGTCAAAAATGGAACTTTTGG-ACATTT
1 GGGGTC-AAAATGGAATTTTTGGAACATTC
* *
37650691 GGGGTCAAAAATGGAATTTTTGGAA-TTTT
1 GGGGTC-AAAATGGAATTTTTGGAACATTC
* **
37650720 GAGGGT-AAAATGTAATTTTTGGAAGTTTC
1 G-GGGTCAAAATGGAATTTTTGGAACATTC
* * *
37650749 GAGGTCAAAATGTAATTTTTGGAACTTTC
1 GGGGTCAAAATGGAATTTTTGGAACATTC
**
37650778 GGGGTCAAAATATAATTTTTGGA
1 GGGGTCAAAATGGAATTTTTGGA
37650801 TAGTTTAGGG
Statistics
Matches: 141, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
28 27 0.19
29 91 0.65
30 16 0.11
31 7 0.05
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (29 bp):
GGGGTCAAAATGGAATTTTTGGAACATTC
Found at i:37650692 original size:87 final size:85
Alignment explanation
Indices: 37650601--37650800 Score: 233
Period size: 87 Copynumber: 2.3 Consensus size: 85
37650591 TTTTTAAAGT
* * * *
37650601 TTTGGGGTCAAAATGGAGTTTTT-GAACATTCGGGGGTAAAATGGTAATTTTTGAAAGTTTTGTG
1 TTTGGGGTCAAAATGGAATTTTTGGAA-ATTCGAGGGTAAAAT-GTAATTTTTGAAAGTTTCGAG
37650665 GTCAAAAATGGAACTTTTGG-AC
64 GTC-AAAATGGAACTTTTGGAAC
* * *
37650687 ATTTGGGGTCAAAAATGGAATTTTTGGAATTTTGAGGGTAAAATGTAATTTTTGGAAGTTTCGAG
1 -TTTGGGGTC-AAAATGGAATTTTTGGAAATTCGAGGGTAAAATGTAATTTTTGAAAGTTTCGAG
* *
37650752 GTCAAAATGTAATTTTTGGAAC
64 GTCAAAATGGAACTTTTGGAAC
**
37650774 TTTCGGGGTCAAAATATAATTTTTGGA
1 TTT-GGGGTCAAAATGGAATTTTTGGA
37650801 TAGTTTAGGG
Statistics
Matches: 98, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
86 32 0.33
87 38 0.39
88 25 0.26
89 3 0.03
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.38
Consensus pattern (85 bp):
TTTGGGGTCAAAATGGAATTTTTGGAAATTCGAGGGTAAAATGTAATTTTTGAAAGTTTCGAGGT
CAAAATGGAACTTTTGGAAC
Found at i:37651905 original size:9 final size:9
Alignment explanation
Indices: 37651889--37651940 Score: 56
Period size: 9 Copynumber: 5.8 Consensus size: 9
37651879 TTTTGTAAAT
37651889 ATTATTATTA
1 ATTATTA-TA
37651899 A-TATTATA
1 ATTATTATA
37651907 ATTATTATA
1 ATTATTATA
37651916 ATTATTATTA
1 ATTATTA-TA
37651926 GA-T-TTATA
1 -ATTATTATA
37651934 ATTATTA
1 ATTATTA
37651941 CCATAACTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
7 1 0.03
8 6 0.16
9 25 0.68
10 4 0.11
11 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (9 bp):
ATTATTATA
Found at i:37651912 original size:15 final size:15
Alignment explanation
Indices: 37651892--37651940 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
37651882 TGTAAATATT
37651892 ATTATTAATATTATA
1 ATTATTAATATTATA
*
37651907 ATTATT-ATA--ATT
1 ATTATTAATATTATA
37651919 ATTATTAGAT-TTATA
1 ATTATTA-ATATTATA
37651934 ATTATTA
1 ATTATTA
37651941 CCATAACTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 8 0.29
14 5 0.18
15 15 0.54
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTATTAATATTATA
Found at i:37651932 original size:27 final size:27
Alignment explanation
Indices: 37651889--37651940 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
37651879 TTTTGTAAAT
37651889 ATTATTATTAATATTATAATTATTATA
1 ATTATTATTAATATTATAATTATTATA
37651916 ATTATTATTAGAT-TTATAATTATTA
1 ATTATTATTA-ATATTATAATTATTA
37651941 CCATAACTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (27 bp):
ATTATTATTAATATTATAATTATTATA
Found at i:37652815 original size:17 final size:18
Alignment explanation
Indices: 37652793--37652837 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
37652783 TTTTAAAATT
37652793 TAAATTTAAAT-TCAAAA
1 TAAATTTAAATCTCAAAA
*
37652810 TAAATTT-AATCTTAAAA
1 TAAATTTAAATCTCAAAA
37652827 TAAATCTTAAA
1 TAAAT-TTAAA
37652838 AGTGGGTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 3 0.12
17 17 0.71
18 2 0.08
19 2 0.08
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAATTTAAATCTCAAAA
Found at i:37654165 original size:24 final size:22
Alignment explanation
Indices: 37654109--37654167 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 22
37654099 TAGTATAACG
37654109 ATATTA-AAA-TATAAAATTAA
1 ATATTATAAATTATAAAATTAA
*
37654129 ATATTATATAATTATAAAATATTA
1 ATATTATA-AATTATAAAAT-TAA
37654153 ATATTAATAAATTAT
1 ATATT-ATAAATTAT
37654168 TACAATATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 6 0.18
21 1 0.03
22 2 0.06
23 8 0.24
24 13 0.39
25 3 0.09
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
ATATTATAAATTATAAAATTAA
Found at i:37663078 original size:7 final size:7
Alignment explanation
Indices: 37663066--37663098 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
37663056 CAATTAATGC
37663066 AAAAAGA
1 AAAAAGA
37663073 AAAAAG-
1 AAAAAGA
37663079 AAAAAGA
1 AAAAAGA
37663086 AAAAGAGA
1 AAAA-AGA
37663094 AAAAA
1 AAAAA
37663099 CGGGAAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:37663084 original size:13 final size:14
Alignment explanation
Indices: 37663066--37663097 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
37663056 CAATTAATGC
37663066 AAAAAGAAAAA-AG
1 AAAAAGAAAAAGAG
37663079 AAAAAGAAAAAGAG
1 AAAAAGAAAAAGAG
37663093 AAAAA
1 AAAAA
37663098 ACGGGAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAGAG
Found at i:37675873 original size:16 final size:18
Alignment explanation
Indices: 37675840--37675877 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
37675830 TATTTAGATT
37675840 TTTTTTAAAATTATTATA
1 TTTTTTAAAATTATTATA
37675858 TTTTTTAAAA-TA-TATA
1 TTTTTTAAAATTATTATA
37675874 TTTT
1 TTTT
37675878 GAATTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTTAAAATTATTATA
Found at i:37675896 original size:20 final size:20
Alignment explanation
Indices: 37675871--37675939 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
37675861 TTTAAAATAT
37675871 ATATTTTGAATTTTTTATAA
1 ATATTTTGAATTTTTTATAA
* * *
37675891 ATATTTTAAAATTTTGA-AA
1 ATATTTTGAATTTTTTATAA
* *
37675910 ATTATTTTGAAACTATTTTGTAA
1 A-TATTTTG-AA-TTTTTTATAA
37675933 ATATTTT
1 ATATTTT
37675940 TAAAAAAATT
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
19 3 0.08
20 20 0.54
21 2 0.05
22 9 0.24
23 3 0.08
ACGTcount: A:0.38, C:0.01, G:0.06, T:0.55
Consensus pattern (20 bp):
ATATTTTGAATTTTTTATAA
Found at i:37675928 original size:11 final size:11
Alignment explanation
Indices: 37675889--37675944 Score: 55
Period size: 11 Copynumber: 5.3 Consensus size: 11
37675879 AATTTTTTAT
37675889 AAATATTTT--
1 AAATATTTTGA
37675898 AAA-ATTTTGA
1 AAATATTTTGA
37675908 AAATTATTTTGA
1 AAA-TATTTTGA
* *
37675920 AACTATTTTGT
1 AAATATTTTGA
*
37675931 AAATATTTTTA
1 AAATATTTTGA
37675942 AAA
1 AAA
37675945 AAATTAATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 5 0.13
9 3 0.08
10 3 0.08
11 18 0.47
12 9 0.24
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (11 bp):
AAATATTTTGA
Found at i:37678925 original size:12 final size:11
Alignment explanation
Indices: 37678906--37678935 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
37678896 TGTATAACAT
37678906 TTATTTTATTA
1 TTATTTTATTA
37678917 TTAATTTTATTA
1 TT-ATTTTATTA
37678929 TTATTTT
1 TTATTTT
37678936 GAAGACATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:37682941 original size:58 final size:58
Alignment explanation
Indices: 37682781--37682946 Score: 205
Period size: 58 Copynumber: 2.9 Consensus size: 58
37682771 ATATTATATA
* * *
37682781 TTATAATTTTTATT-AATTCATATTTTAATAATAATTATATTAAAAATGTTATTAAATTAT
1 TTATTATTTTTATTAAATT-ATA-TTTAATAATAATTATATT-AAAATATAATTAAATTAT
* * *
37682841 AT-TTA-TTTTATTAAATTGTATTTAATAATAATTATATTAAAATATAATTGAATTAT
1 TTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATTAT
*
37682897 TTATTATTTTTATTAAATTATATTTAATAATAATCT-TATTAAAATTTAAT
1 TTATTATTTTTATTAAATTATATTTAATAATAAT-TATATTAAAATATAAT
37682947 AACAATAATC
Statistics
Matches: 93, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
56 16 0.17
57 21 0.23
58 48 0.52
59 7 0.08
60 1 0.01
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (58 bp):
TTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATTAT
Found at i:37683118 original size:46 final size:44
Alignment explanation
Indices: 37683026--37683119 Score: 120
Period size: 46 Copynumber: 2.1 Consensus size: 44
37683016 ATTACAACAT
*
37683026 CATTCTATTCAACCAAACATAAAAATACTATTACAGCTCTATTC
1 CATTCTATTCAACCAAACATAAAAATACTATTACAGCCCTATTC
*
37683070 CATTCTATTCAACC-AA-ATAACCGAATTACTGATTACAGCCCTATTC
1 CATTCTATTCAACCAAACATAA---AAATACT-ATTACAGCCCTATTC
37683116 CATT
1 CATT
37683120 ACAGCTTTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
42 4 0.09
43 2 0.05
44 14 0.32
45 6 0.14
46 18 0.41
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.32
Consensus pattern (44 bp):
CATTCTATTCAACCAAACATAAAAATACTATTACAGCCCTATTC
Found at i:37683122 original size:16 final size:16
Alignment explanation
Indices: 37683101--37683152 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
37683091 CGAATTACTG
*
37683101 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
*
37683117 ATTACAGCTTTATTCC
1 ATTACAGCTCTATTCC
* *
37683133 ATTACAACTCTATTTC
1 ATTACAGCTCTATTCC
37683149 ATTA
1 ATTA
37683153 TAGCGAACCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.29, C:0.27, G:0.04, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:37694527 original size:3 final size:3
Alignment explanation
Indices: 37694513--37694563 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
37694503 ATATATTAAA
* * * * *
37694513 TAT TAG TAT TAT TAT AAC AAT TAT TAT TAT TAT TAT TAT TAT TAT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
37694561 TAT
1 TAT
37694564 ACAAAACTTA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:37696696 original size:30 final size:28
Alignment explanation
Indices: 37696662--37696736 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 28
37696652 AAAATGGGAT
37696662 TTTAAGTTCCTTAAAAGTTAGAAAAAAAAA
1 TTTAAG-TCCTTAAAAGTT-GAAAAAAAAA
* *
37696692 TTTAAGTCTTTTAAAAGTTGATAAAAAAA
1 TTTAAGTC-CTTAAAAGTTGAAAAAAAAA
*
37696721 TTTAAGCCCTTAAAAG
1 TTTAAGTCCTTAAAAG
37696737 CTATAATTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
28 7 0.17
29 18 0.45
30 15 0.38
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.33
Consensus pattern (28 bp):
TTTAAGTCCTTAAAAGTTGAAAAAAAAA
Found at i:37699461 original size:26 final size:24
Alignment explanation
Indices: 37699434--37699480 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
37699424 TTCTTCTCTT
* *
37699434 TATTTTTA-TAAT-ATTGTTAATA
1 TATTTATATTAATAATTTTTAATA
37699456 TATTTATATTAATAATTTTTAATA
1 TATTTATATTAATAATTTTTAATA
37699480 T
1 T
37699481 GTCCAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
23 4 0.19
24 10 0.48
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (24 bp):
TATTTATATTAATAATTTTTAATA
Done.