Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 24 of 132
Found at i:6846655 original size:58 final size:58
Alignment explanation
Indices: 6846560--6846695 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 58
6846550 GGATGATCGG
* * * * *
6846560 GGGTAAAAAGGCAATTTTTGGATACCTTGGGGCAAAATGGTAATTTTTAAACGTTCGA
1 GGGTAAAATGGTAATTTTTGGACACCTAGGGGCAAAATGATAATTTTTAAACGTTCGA
** * ** * * *
6846618 GGGTAAAATGGTAATTTTTGGACGTCTAGGGGTAAAATGATAATTTTTGGATGTTTGG
1 GGGTAAAATGGTAATTTTTGGACACCTAGGGGCAAAATGATAATTTTTAAACGTTCGA
*
6846676 GGGTAAAATGATAATTTTTG
1 GGGTAAAATGGTAATTTTTG
6846696 AAAAGTTCAG
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
58 64 1.00
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.35
Consensus pattern (58 bp):
GGGTAAAATGGTAATTTTTGGACACCTAGGGGCAAAATGATAATTTTTAAACGTTCGA
Found at i:6846730 original size:31 final size:29
Alignment explanation
Indices: 6846680--6846763 Score: 98
Period size: 30 Copynumber: 2.8 Consensus size: 29
6846670 GTTTGGGGGT
6846680 AAAATGATAATTTTTGAAAAGTTCAGGATCA
1 AAAATG-TAATTTTTGAAAAGTTCAGGAT-A
* * *
6846711 AAAATGTAATTTTTGGAAAATTTGAGGGTA
1 AAAATGTAATTTTT-GAAAAGTTCAGGATA
6846741 AAAATGTAATTTTT-AAGAAGTTC
1 AAAATGTAATTTTTGAA-AAGTTC
6846764 GGGGGCCAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
28 2 0.04
29 4 0.09
30 23 0.50
31 17 0.37
ACGTcount: A:0.43, C:0.04, G:0.18, T:0.36
Consensus pattern (29 bp):
AAAATGTAATTTTTGAAAAGTTCAGGATA
Found at i:6846743 original size:60 final size:60
Alignment explanation
Indices: 6846651--6846763 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 60
6846641 GTCTAGGGGT
** *
6846651 AAAATGATAATTTTTGGATGTTTGGGGGT-AAAATGATAATTTTTGAA-AAGTTCAGGATCA
1 AAAATGATAATTTTTGGAAATTTGAGGGTAAAAATG-TAATTTTT-AAGAAGTTCAGGATCA
6846711 AAAATG-TAATTTTTGGAAAATTTGAGGGTAAAAATGTAATTTTTAAGAAGTTC
1 AAAATGATAATTTTTGG-AAATTTGAGGGTAAAAATGTAATTTTTAAGAAGTTC
6846764 GGGGGCCAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
59 12 0.26
60 29 0.62
61 6 0.13
ACGTcount: A:0.39, C:0.03, G:0.21, T:0.37
Consensus pattern (60 bp):
AAAATGATAATTTTTGGAAATTTGAGGGTAAAAATGTAATTTTTAAGAAGTTCAGGATCA
Found at i:6847204 original size:7 final size:7
Alignment explanation
Indices: 6847192--6847221 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
6847182 CGGGTCGATC
*
6847192 GGGTCAA
1 GGGTCAG
6847199 GGGTCAG
1 GGGTCAG
6847206 GGGTCAG
1 GGGTCAG
6847213 GGGTCAG
1 GGGTCAG
6847220 GG
1 GG
6847222 CATGAAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.17, C:0.13, G:0.57, T:0.13
Consensus pattern (7 bp):
GGGTCAG
Found at i:6848701 original size:17 final size:17
Alignment explanation
Indices: 6848665--6848701 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
6848655 AATTTTAATG
*
6848665 TAAAATAAATTTAAACT
1 TAAAATAAATTAAAACT
*
6848682 TAAAATAAATTAAAATT
1 TAAAATAAATTAAAACT
6848699 TAA
1 TAA
6848702 CAAATCTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAATAAATTAAAACT
Found at i:6849016 original size:13 final size:13
Alignment explanation
Indices: 6848998--6849025 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6848988 ATCACAAACT
6848998 CATCAGCCTCAGC
1 CATCAGCCTCAGC
6849011 CATCAGCCTCAGC
1 CATCAGCCTCAGC
6849024 CA
1 CA
6849026 GACTCATCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.46, G:0.14, T:0.14
Consensus pattern (13 bp):
CATCAGCCTCAGC
Found at i:6849213 original size:21 final size:21
Alignment explanation
Indices: 6849189--6849228 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
6849179 AATTTTTTGG
6849189 GGGTTTT-AATTTCTTTTGTAA
1 GGGTTTTAAATTT-TTTTGTAA
6849210 GGGTTTTAAATTTTTTTGT
1 GGGTTTTAAATTTTTTTGT
6849229 GGGTTATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.20, T:0.60
Consensus pattern (21 bp):
GGGTTTTAAATTTTTTTGTAA
Found at i:6852236 original size:58 final size:58
Alignment explanation
Indices: 6852186--6852388 Score: 248
Period size: 59 Copynumber: 3.5 Consensus size: 58
6852176 TTTTTGTATA
***
6852186 TTCGGGGGTAAAAACTTAATTTTTGGAAAGTTTAAGATAAAAATGGAATTTTTGGAAG
1 TTCGGGGGTAAAATGGTAATTTTTGGAAAGTTTAAGATAAAAATGGAATTTTTGGAAG
* * *
6852244 TTCGGGGGTAAAATGGTGATTTTTGGAAA-ATTAGTGATCAAAAATGGAATTTTTGGAAG
1 TTCGGGGGTAAAATGGTAATTTTTGGAAAGTTTA-AGAT-AAAAATGGAATTTTTGGAAG
** * * *
6852303 TTAAGGGGTAAAATGGTAA-TTTTGGAAAGTTTGAGGTTAAAAATGGAATTTTAGGAAG
1 TTCGGGGGTAAAATGGTAATTTTTGGAAAGTTT-AAGATAAAAATGGAATTTTTGGAAG
*
6852361 TTTGGGGGGTAAAATGGTAATTTTTGGA
1 -TTCGGGGGTAAAATGGTAATTTTTGGA
6852389 TTTAGGGTTA
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
57 3 0.02
58 56 0.45
59 57 0.46
60 8 0.06
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.34
Consensus pattern (58 bp):
TTCGGGGGTAAAATGGTAATTTTTGGAAAGTTTAAGATAAAAATGGAATTTTTGGAAG
Found at i:6852255 original size:29 final size:28
Alignment explanation
Indices: 6852105--6852411 Score: 144
Period size: 29 Copynumber: 10.6 Consensus size: 28
6852095 GTTACCTGAT
* *
6852105 GGTAAAACGGTAA-TTTTGGACACTTCGGG
1 GGTAAAATGGTAATTTTTGGA-AGTT-GGG
* * * **
6852134 GGTAAAACGGTAATTTTTGAACACTCAGG
1 GGTAAAATGGTAATTTTTGGA-AGTTGGG
* * *
6852163 GGCAAAATTGTAATTTTTGTATA-TTCGGG
1 GGTAAAATGGTAATTTTTGGA-AGTT-GGG
*** ***
6852192 GGTAAAAACTTAATTTTTGGAAAGTTTAA
1 GGTAAAATGGTAATTTTTGG-AAGTTGGG
*
6852221 GATAAAAATGG-AATTTTTGGAAGTTCGGG
1 GGT-AAAATGGTAATTTTTGGAAGTT-GGG
* * * *
6852250 GGTAAAATGGTGATTTTTGGAAAATTAGT
1 GGTAAAATGGTAATTTTTGG-AAGTTGGG
* *
6852279 GATCAAAAATGG-AATTTTTGGAAGTTAAGG
1 GGT--AAAATGGTAATTTTTGGAAGTT-GGG
*
6852309 GGTAAAATGGTAA-TTTTGGAAAGTTTGAG
1 GGTAAAATGGTAATTTTTGG-AAG-TTGGG
* *
6852338 GTTAAAAATGG-AATTTTAGGAAGTTTGGGG
1 GGT-AAAATGGTAATTTTTGGAAG-TT-GGG
* *
6852368 GGTAAAATGGTAATTTTTGG-ATTTAGG
1 GGTAAAATGGTAATTTTTGGAAGTTGGG
*
6852395 GTTAAAAT-GTAATTTTT
1 GGTAAAATGGTAATTTTT
6852412 AAAAAGTTTA
Statistics
Matches: 215, Mismatches: 45, Indels: 39
0.72 0.15 0.13
Matches are distributed among these distances:
26 9 0.04
27 9 0.04
28 28 0.13
29 103 0.48
30 59 0.27
31 7 0.03
ACGTcount: A:0.34, C:0.04, G:0.27, T:0.35
Consensus pattern (28 bp):
GGTAAAATGGTAATTTTTGGAAGTTGGG
Found at i:6852420 original size:57 final size:58
Alignment explanation
Indices: 6852206--6852425 Score: 150
Period size: 59 Copynumber: 3.8 Consensus size: 58
6852196 AAAACTTAAT
* * *** * *
6852206 TTTTGGAAAGTTT-AAGATAAAAATGGAATTTTTGGAAG-TTCGGGGGTAAAATGGTGAT
1 TTTTGG-AAGTTTGAGGTTAAAAATGGAATTTTAAAAAGTTTAGGGGGTAAAATGGT-AA
** * *** *
6852264 TTTTGGAAAATT-AGTGATCAAAAATGGAATTTTTGGAAG-TTAAGGGGTAAAATGGTAA
1 TTTTGGAAGTTTGAG-G-TTAAAAATGGAATTTTAAAAAGTTTAGGGGGTAAAATGGTAA
** *
6852322 TTTTGGAAAGTTTGAGGTTAAAAATGGAATTTTAGGAAGTTTGGGGGGTAAAATGGTAA
1 TTTTGG-AAGTTTGAGGTTAAAAATGGAATTTTAAAAAGTTTAGGGGGTAAAATGGTAA
*
6852381 TTTTTGG-A-TTT-AGGGTT-AAAATGTAATTTTTAAAAAGTTTAGGGG
1 -TTTTGGAAGTTTGA-GGTTAAAAATGGAA-TTTTAAAAAGTTTAGGGG
6852426 TCAAAATATG
Statistics
Matches: 136, Mismatches: 18, Indels: 17
0.80 0.11 0.10
Matches are distributed among these distances:
56 9 0.07
57 27 0.20
58 35 0.26
59 57 0.42
60 8 0.06
ACGTcount: A:0.35, C:0.01, G:0.28, T:0.36
Consensus pattern (58 bp):
TTTTGGAAGTTTGAGGTTAAAAATGGAATTTTAAAAAGTTTAGGGGGTAAAATGGTAA
Found at i:6855933 original size:32 final size:33
Alignment explanation
Indices: 6855897--6855973 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
6855887 AGTTTTCCTG
6855897 AAATATTTT-TAAAAAATC-TACCAAACAACAGA
1 AAATATTTTATAAAAAATCAT-CCAAACAACAGA
* * * *
6855929 AAATATTTTATACATATTCATCCAAACATCAGA
1 AAATATTTTATAAAAAATCATCCAAACAACAGA
6855962 AAATATTATTAT
1 AAATATT-TTAT
6855974 TTTTTAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
32 9 0.24
33 24 0.63
34 5 0.13
ACGTcount: A:0.51, C:0.14, G:0.03, T:0.32
Consensus pattern (33 bp):
AAATATTTTATAAAAAATCATCCAAACAACAGA
Found at i:6858371 original size:22 final size:23
Alignment explanation
Indices: 6858334--6858376 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
6858324 GGTTTCATTG
*
6858334 ATAAAATTATATTAAATATAAAT
1 ATAAAAATATATTAAATATAAAT
6858357 ATAAAAAT-TATTAAATATAA
1 ATAAAAATATATTAAATATAA
6858377 TACAAAGGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
ATAAAAATATATTAAATATAAAT
Found at i:6860596 original size:26 final size:29
Alignment explanation
Indices: 6860566--6860627 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
6860556 TCGTTAAAAA
*
6860566 ATTTAAATT-T-T-TGTTCATGTTCGTTT
1 ATTTAAATTATGTGTGTTCAAGTTCGTTT
6860592 ATTTAAAATTATGTGTGTTCAAGTTCGTTT
1 ATTT-AAATTATGTGTGTTCAAGTTCGTTT
*
6860622 GTTTAA
1 ATTTAA
6860628 TGTTCACGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
26 4 0.13
27 5 0.17
28 1 0.03
29 3 0.10
30 17 0.57
ACGTcount: A:0.24, C:0.06, G:0.15, T:0.55
Consensus pattern (29 bp):
ATTTAAATTATGTGTGTTCAAGTTCGTTT
Found at i:6860797 original size:12 final size:12
Alignment explanation
Indices: 6860768--6860825 Score: 73
Period size: 12 Copynumber: 4.9 Consensus size: 12
6860758 ATCATTAATA
*
6860768 AATAAACGAACC
1 AATAAACGAGCC
*
6860780 -ATAAACGAGCT
1 AATAAACGAGCC
*
6860791 TATAAACGAGCC
1 AATAAACGAGCC
*
6860803 AATAAATGAGCC
1 AATAAACGAGCC
6860815 AATAAACGAGC
1 AATAAACGAGC
6860826 TTGTTGTTGA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
11 9 0.23
12 30 0.77
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.14
Consensus pattern (12 bp):
AATAAACGAGCC
Found at i:6861371 original size:18 final size:18
Alignment explanation
Indices: 6861348--6861391 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
6861338 TTTTTTATAC
6861348 TTTTTAAATAATTTTAAA
1 TTTTTAAATAATTTTAAA
* * *
6861366 TTTTTATATATTTTTTAA
1 TTTTTAAATAATTTTAAA
6861384 -TTTTAAAT
1 TTTTTAAAT
6861392 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTTAAATAATTTTAAA
Found at i:6870840 original size:34 final size:34
Alignment explanation
Indices: 6870799--6870869 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
6870789 ATAAAAAAAG
6870799 TAAATTTAAATTAAAACTAAAATGAAGAAATCAA
1 TAAATTTAAATTAAAACTAAAATGAAGAAATCAA
6870833 TAAATTTAAATTAAAACTAAAATGAAGAAATCAA
1 TAAATTTAAATTAAAACTAAAATGAAGAAATCAA
6870867 TAA
1 TAA
6870870 TTAAAAGTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.27
Consensus pattern (34 bp):
TAAATTTAAATTAAAACTAAAATGAAGAAATCAA
Found at i:6871215 original size:31 final size:31
Alignment explanation
Indices: 6871175--6871267 Score: 82
Period size: 30 Copynumber: 3.0 Consensus size: 31
6871165 GGTATTTTTT
*
6871175 GGTGGAGCCTAGTTGATAGGCGACACCAGTG
1 GGTGAAGCCTAGTTGATAGGCGACACCAGTG
** ** *
6871206 GGTGAAGCCTCCTAACATA--CGACATCAGTG
1 GGTGAAGCCTAGT-TGATAGGCGACACCAGTG
* * *
6871236 GGTGAAGGCTAGTTGACAGGAGACACCAGTG
1 GGTGAAGCCTAGTTGATAGGCGACACCAGTG
6871267 G
1 G
6871268 TGCCCATGTC
Statistics
Matches: 45, Mismatches: 14, Indels: 6
0.69 0.22 0.09
Matches are distributed among these distances:
29 2 0.04
30 20 0.44
31 20 0.44
32 3 0.07
ACGTcount: A:0.27, C:0.20, G:0.34, T:0.18
Consensus pattern (31 bp):
GGTGAAGCCTAGTTGATAGGCGACACCAGTG
Found at i:6871451 original size:15 final size:15
Alignment explanation
Indices: 6871423--6871459 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
6871413 AGGTTAGTAG
6871423 AATTTTTTAGCAATA
1 AATTTTTTAGCAATA
6871438 AATTTGTTTA-CAAT-
1 AATTT-TTTAGCAATA
6871452 AATTTTTT
1 AATTTTTT
6871460 TGCTGTTCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.14
14 5 0.24
15 9 0.43
16 4 0.19
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (15 bp):
AATTTTTTAGCAATA
Found at i:6872380 original size:6 final size:6
Alignment explanation
Indices: 6872369--6872399 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
6872359 GCTGTCATCG
6872369 CTCACC CTCACC CTCACC CTCACC CTCACC C
1 CTCACC CTCACC CTCACC CTCACC CTCACC C
6872400 ATGCTCTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.68, G:0.00, T:0.16
Consensus pattern (6 bp):
CTCACC
Found at i:6872655 original size:21 final size:20
Alignment explanation
Indices: 6872627--6872669 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
6872617 TTTGTTTTTT
*
6872627 TTATTATCTATTTATATCTA
1 TTATTATCTATCTATATCTA
*
6872647 TTATCTATCTATCTATATTTA
1 TTAT-TATCTATCTATATCTA
6872668 TT
1 TT
6872670 TATTTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (20 bp):
TTATTATCTATCTATATCTA
Found at i:6876569 original size:16 final size:16
Alignment explanation
Indices: 6876548--6876578 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6876538 CCTTTCTTAC
*
6876548 CTAAATTAATCAGAAT
1 CTAAATTAATAAGAAT
6876564 CTAAATTAATAAGAA
1 CTAAATTAATAAGAA
6876579 ACATTTATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.06, T:0.29
Consensus pattern (16 bp):
CTAAATTAATAAGAAT
Found at i:6876621 original size:27 final size:27
Alignment explanation
Indices: 6876589--6876660 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
6876579 ACATTTATAA
*
6876589 AATAAATAAAAAAATAATAAAAATTAT-
1 AATAAATAAAAAAATAA-AAAAATAATG
*
6876616 AATAAATAAATAAAATAAACAAATAATG
1 AATAAATAAA-AAAATAAAAAAATAATG
*
6876644 TATAAATAATAAAAATA
1 AATAAATAA-AAAAATA
6876661 CATTTTCTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 17 0.44
28 21 0.54
29 1 0.03
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (27 bp):
AATAAATAAAAAAATAAAAAAATAATG
Found at i:6876648 original size:31 final size:27
Alignment explanation
Indices: 6876589--6876658 Score: 79
Period size: 31 Copynumber: 2.4 Consensus size: 27
6876579 ACATTTATAA
*
6876589 AATAAATAAAAAAATAATAAAAATTAT
1 AATAAATAAAAAAATAACAAAAATTAT
6876616 AATAAATAAATAAAATAAACAAATAATGTAT
1 AATAAATAAA-AAAAT-AACAAA-AAT-TAT
6876647 AA-ATAATAAAAA
1 AATA-AATAAAAA
6876659 TACATTTTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
27 10 0.27
28 5 0.14
29 5 0.14
30 6 0.16
31 11 0.30
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.24
Consensus pattern (27 bp):
AATAAATAAAAAAATAACAAAAATTAT
Found at i:6876795 original size:5 final size:5
Alignment explanation
Indices: 6876785--6876810 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
6876775 ATCCCTTTCT
6876785 CCTTC CCTTC CCTTC CCTTC CCTTC C
1 CCTTC CCTTC CCTTC CCTTC CCTTC C
6876811 ATTTTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (5 bp):
CCTTC
Found at i:6891345 original size:25 final size:26
Alignment explanation
Indices: 6891288--6891352 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
6891278 AATTTAGTAG
* *
6891288 TTAGTAGGTGAAAGATTAAGAGTTTT
1 TTAGTAGGTGAAAGATCAAAAGTTTT
*
6891314 TTAGTAGATGAAAGATCAAAAG-TTT
1 TTAGTAGGTGAAAGATCAAAAGTTTT
6891339 TTAGTAGGTGAAAG
1 TTAGTAGGTGAAAG
6891353 GCCAAGGGTC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
25 16 0.46
26 19 0.54
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.34
Consensus pattern (26 bp):
TTAGTAGGTGAAAGATCAAAAGTTTT
Found at i:6891536 original size:23 final size:23
Alignment explanation
Indices: 6891506--6891551 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
6891496 TATTAATTCG
6891506 ATTTTCAGTTTTCAAATCGGTAT
1 ATTTTCAGTTTTCAAATCGGTAT
*
6891529 ATTTTCAGTTTTCAAATTGGTAT
1 ATTTTCAGTTTTCAAATCGGTAT
6891552 CAGAGCTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (23 bp):
ATTTTCAGTTTTCAAATCGGTAT
Found at i:6895257 original size:25 final size:25
Alignment explanation
Indices: 6895187--6895251 Score: 112
Period size: 26 Copynumber: 2.6 Consensus size: 25
6895177 AATTTAGTAG
6895187 TTAGTAGGTGAAAGATCAAGAGTTT
1 TTAGTAGGTGAAAGATCAAGAGTTT
*
6895212 TATAGTAGATGAAAGATCAAGAGTTT
1 T-TAGTAGGTGAAAGATCAAGAGTTT
6895238 TTAGTAGGTGAAAG
1 TTAGTAGGTGAAAG
6895252 GCCAAGGGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 13 0.35
26 24 0.65
ACGTcount: A:0.38, C:0.03, G:0.28, T:0.31
Consensus pattern (25 bp):
TTAGTAGGTGAAAGATCAAGAGTTT
Found at i:6901771 original size:31 final size:31
Alignment explanation
Indices: 6901733--6901838 Score: 105
Period size: 31 Copynumber: 3.5 Consensus size: 31
6901723 TTAATATAAC
6901733 ATTTGGTA-TCTAAACTTGACATTTTTTCCTA
1 ATTTGGTACT-TAAACTTGACATTTTTTCCTA
** *
6901764 ATTTGGTACTTAAACTT----TTTTGACCCA
1 ATTTGGTACTTAAACTTGACATTTTTTCCTA
* * *
6901791 ATTTTGTACTTGAACTTGACACTTTTTCCTA
1 ATTTGGTACTTAAACTTGACATTTTTTCCTA
*
6901822 ATTTGGTACCTAAACTT
1 ATTTGGTACTTAAACTT
6901839 TTTTTGGATC
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
27 22 0.38
31 35 0.60
32 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.46
Consensus pattern (31 bp):
ATTTGGTACTTAAACTTGACATTTTTTCCTA
Found at i:6901877 original size:60 final size:59
Alignment explanation
Indices: 6901745--6901922 Score: 232
Period size: 61 Copynumber: 3.0 Consensus size: 59
6901735 TTGGTATCTA
* * * *
6901745 AACTTGACATTTTTTCCTAATTTGGTACTTAAAC-TTTTTTGACCCAATTTTGTACTTG
1 AACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTGATCCAATTTTATACCTG
*
6901803 AACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTTGGATCCAATTTTATACCTG
1 AACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTT-GATCCAATTTTATACCTG
* ** * *
6901863 AACTTGGCATTTTTTCCCTAATTTGGTACCTAAGTTTTTTTTAGATTCAATTTGATACCT
1 AACTTGACATTTTTT-CCTAATTTGGTACCTAAACTTTTTTT-GATCCAATTTTATACCT
6901923 AAAATTATTA
Statistics
Matches: 105, Mismatches: 12, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
58 32 0.30
59 6 0.06
60 28 0.27
61 39 0.37
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (59 bp):
AACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTGATCCAATTTTATACCTG
Found at i:6902215 original size:32 final size:31
Alignment explanation
Indices: 6902155--6902214 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 31
6902145 TTAAAAAACA
6902155 GTCAATTTTAGGTACAAAATTAGGAAAAAGT
1 GTCAATTTTAGGTACAAAATTAGGAAAAAGT
*
6902186 GTCAAGTTTTA-GTACCAAATT-GGACAAAA
1 GTCAA-TTTTAGGTACAAAATTAGGA-AAAA
6902215 AAAAACATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 3 0.12
31 18 0.69
32 5 0.19
ACGTcount: A:0.43, C:0.10, G:0.18, T:0.28
Consensus pattern (31 bp):
GTCAATTTTAGGTACAAAATTAGGAAAAAGT
Found at i:6904495 original size:29 final size:28
Alignment explanation
Indices: 6904433--6904492 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
6904423 AAAACGAGAC
6904433 TTTTGGATACCCGGGGGCAAAATGGTAA
1 TTTTGGATACCCGGGGGCAAAATGGTAA
** *
6904461 TTTTGGATATGCGGGGGCAAAGTGGTAA
1 TTTTGGATACCCGGGGGCAAAATGGTAA
6904489 TTTT
1 TTTT
6904493 TGGTGAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.10, G:0.33, T:0.32
Consensus pattern (28 bp):
TTTTGGATACCCGGGGGCAAAATGGTAA
Found at i:6904536 original size:59 final size:59
Alignment explanation
Indices: 6904451--6904728 Score: 342
Period size: 59 Copynumber: 4.7 Consensus size: 59
6904441 ACCCGGGGGC
* ** * * * **
6904451 AAAATGGTAATTTTGGATA-TGCGGGGGCAAAGTGGTAATTTTTGGTGAAATTAAGGTTA
1 AAAATGG-AATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGATGAAATTGGGGTTA
*
6904510 AAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGATGACATTGGGGTTA
1 AAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGATGAAATTGGGGTTA
* ** * *
6904569 AAAATGGAATTTTGGAAAGTTTAGGGGTAATTTGGTAATTTTTGGTGAAACTGGGGTTA
1 AAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGATGAAATTGGGGTTA
** *
6904628 AAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGATGAAACCGGGGCTA
1 AAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGATGAAATTGGGGTTA
** * * *
6904687 AAAACAGAATTTTGGAAGGTTCGAGGGTAAAATGGTAATTTT
1 AAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTT
6904729 CGAACAGTCT
Statistics
Matches: 192, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
58 10 0.05
59 182 0.95
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.34
Consensus pattern (59 bp):
AAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGATGAAATTGGGGTTA
Found at i:6904540 original size:29 final size:29
Alignment explanation
Indices: 6904510--6904669 Score: 141
Period size: 29 Copynumber: 5.5 Consensus size: 29
6904500 ATTAAGGTTA
6904510 AAAATGG-AATTTTGGAAAGTTTGGGGGT
1 AAAATGGTAATTTTGGAAAGTTTGGGGGT
* * ** *
6904538 AAAATGGTAATTTTTGATGACATTGGGGTT
1 AAAATGGTAATTTTGGA-AAGTTTGGGGGT
*
6904568 AAAAATGG-AATTTTGGAAAGTTTAGGGGT
1 -AAAATGGTAATTTTGGAAAGTTTGGGGGT
** * *
6904597 AATTTGGTAATTTTTGGTGAAA--CTGGGGTT
1 AAAATGGTAA-TTTT-G-GAAAGTTTGGGGGT
6904627 AAAAATGG-AATTTTGGAAAGTTTGGGGGT
1 -AAAATGGTAATTTTGGAAAGTTTGGGGGT
6904656 AAAATGGTAATTTT
1 AAAATGGTAATTTT
6904670 TGATGAAACC
Statistics
Matches: 101, Mismatches: 20, Indels: 21
0.71 0.14 0.15
Matches are distributed among these distances:
27 4 0.04
28 20 0.20
29 33 0.33
30 27 0.27
31 13 0.13
32 4 0.04
ACGTcount: A:0.33, C:0.01, G:0.30, T:0.36
Consensus pattern (29 bp):
AAAATGGTAATTTTGGAAAGTTTGGGGGT
Found at i:6904564 original size:30 final size:30
Alignment explanation
Indices: 6904473--6904675 Score: 112
Period size: 29 Copynumber: 6.9 Consensus size: 30
6904463 TTGGATATGC
* * * *
6904473 GGGGGCAAAGTGGTAATTTTTGGTGAAATT
1 GGGGGTAAAATGGTAATTTTTGATGAGATT
** * * * *
6904503 AAGGTTAAAAATGG-AATTTTGGA-AAGTTT
1 GGGGGT-AAAATGGTAATTTTTGATGAGATT
*
6904532 GGGGGTAAAATGGTAATTTTTGATGACATT
1 GGGGGTAAAATGGTAATTTTTGATGAGATT
* * * *
6904562 GGGGTTAAAAATGG-AATTTTGGA-AAGTTT
1 GGGGGT-AAAATGGTAATTTTTGATGAGATT
* ** * * *
6904591 AGGGGTAATTTGGTAATTTTTGGTGAAACT
1 GGGGGTAAAATGGTAATTTTTGATGAGATT
* * * *
6904621 GGGGTTAAAAATGG-AATTTTGGA-AAGTTT
1 GGGGGT-AAAATGGTAATTTTTGATGAGATT
6904650 GGGGGTAAAATGGTAATTTTTGATGA
1 GGGGGTAAAATGGTAATTTTTGATGA
6904676 AACCGGGGCT
Statistics
Matches: 119, Mismatches: 45, Indels: 18
0.65 0.25 0.10
Matches are distributed among these distances:
28 19 0.16
29 43 0.36
30 39 0.33
31 18 0.15
ACGTcount: A:0.32, C:0.01, G:0.31, T:0.35
Consensus pattern (30 bp):
GGGGGTAAAATGGTAATTTTTGATGAGATT
Found at i:6905073 original size:162 final size:160
Alignment explanation
Indices: 6904802--6905133 Score: 547
Period size: 162 Copynumber: 2.1 Consensus size: 160
6904792 GGCATCCAGA
6904802 AGTCAAAGGACTAATTTAAAAATCTCAAAAAATTCCTGGGTCAATTTTGTAATTAAGAAAAAGTT
1 AGTCAAAGGACTAATTTAAAAATCTCAAAAAATTCCTGGGTCAATTTTGTAATTAAGAAAAAGTT
** *
6904867 GATTTGAGGATTAAATTAAAACAAATTAAAAATGTCATGGACTAAATGCACAAATAAGCCAAAAA
66 GATTTGAGGATTAAATTAAAACAAATTAAAAATAACAGGGACTAAATGCA-AAATAAGCCAAAAA
*
6904932 GTGACACATGGCGGCCTCTAGTGCAGTCAAAC
130 -TGACACATGGCAGCCTCTAGTGCAGTCAAAC
* **
6904964 AGTCAAAGGACTAATTTAAAAATCTCAAAAGATTTTTGGGTCAATTTTGTAATTAAGAAAAAGTT
1 AGTCAAAGGACTAATTTAAAAATCTCAAAAAATTCCTGGGTCAATTTTGTAATTAAGAAAAAGTT
*
6905029 GATTTGAGGATTAAATTAAAACAAATTAAAAATAACAGGGACTAAATGCAAAATGAGCCAAAAAT
66 GATTTGAGGATTAAATTAAAACAAATTAAAAATAACAGGGACTAAATGCAAAATAAGCCAAAAAT
* *
6905094 GACACGTGGCAGCCTCTGGTGCAGTCAAAC
131 GACACATGGCAGCCTCTAGTGCAGTCAAAC
*
6905124 AGTCGAAGGA
1 AGTCAAAGGA
6905134 TTAAATTGAA
Statistics
Matches: 159, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
160 37 0.23
161 13 0.08
162 109 0.69
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.25
Consensus pattern (160 bp):
AGTCAAAGGACTAATTTAAAAATCTCAAAAAATTCCTGGGTCAATTTTGTAATTAAGAAAAAGTT
GATTTGAGGATTAAATTAAAACAAATTAAAAATAACAGGGACTAAATGCAAAATAAGCCAAAAAT
GACACATGGCAGCCTCTAGTGCAGTCAAAC
Found at i:6907189 original size:76 final size:76
Alignment explanation
Indices: 6907052--6907589 Score: 889
Period size: 76 Copynumber: 7.1 Consensus size: 76
6907042 TCGAGGCTTC
* * *
6907052 ATCTTGCTCTTACTTCAATTTCAAAGAGATAAAGAATTGCTATCCAACTTTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAATTTC--AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAG
*
6907117 AGGATAGAAAATG
64 AGGATAGGAAATG
* * *
6907130 ATCTTGCTCTTACTTCAATTTCAAAGATAAATACTTGTTATCCAACCCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
6907195 GATAGGAAATG
66 GATAGGAAATG
* *
6907206 ATCTTGCTCTTACTTCAATTTCAGATATAAAGACTTGTTATCCAACTCTACTTTAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
6907271 GATAGGAAATG
66 GATAGGAAATG
6907282 A-CGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
1 ATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
6907346 GGATAGGAAATG
65 GGATAGGAAATG
* * * * *
6907358 ATGTTGCTCTTACTTCAATTTCAAAGATAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
*
6907423 GATATGAAATG
66 GATAGGAAATG
* *
6907434 ATGTTGCTCTTACTTCAATTTCAGAGATAAAAACTTGTTATCCAACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
6907499 GATAGGAAATG
66 GATAGGAAATG
6907510 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
6907575 GATAGGAAATG
66 GATAGGAAATG
6907586 ATCT
1 ATCT
6907590 GGTTTGATCT
Statistics
Matches: 430, Mismatches: 28, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
75 1 0.00
76 407 0.95
78 22 0.05
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.35
Consensus pattern (76 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
GATAGGAAATG
Found at i:6919755 original size:28 final size:29
Alignment explanation
Indices: 6919724--6919784 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
6919714 AAAACGAGAC
6919724 TTTTGGATAC-CCGGGGGAAAAATGGTAA
1 TTTTGGATACGCCGGGGGAAAAATGGTAA
* * *
6919752 TTTTGGATGCGCGGGGGGCAAAATGGTAA
1 TTTTGGATACGCCGGGGGAAAAATGGTAA
6919781 TTTT
1 TTTT
6919785 TGGTAAAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 9 0.31
29 20 0.69
ACGTcount: A:0.26, C:0.10, G:0.34, T:0.30
Consensus pattern (29 bp):
TTTTGGATACGCCGGGGGAAAAATGGTAA
Found at i:6919798 original size:29 final size:29
Alignment explanation
Indices: 6919766--6920076 Score: 91
Period size: 29 Copynumber: 10.7 Consensus size: 29
6919756 GGATGCGCGG
*
6919766 GGGGCAAAATGGTAATTTTTGGTAAA-ATC
1 GGGGAAAAATGGTAATTTTTGG-AAAGATC
* *
6919795 GGGGTTAAAAATGG-AA-TTTTGGAAAGTTTG
1 GGGG--AAAAATGGTAATTTTTGGAAAG-ATC
* *
6919825 GGGGTAAAATGGTAATTTTT-G-ATGACTC
1 GGGGAAAAATGGTAATTTTTGGAAAGA-TC
* * * *
6919853 TGGGGTTAAAAT-G-AAATTTTGGAAAGTTTA
1 -GGGG-AAAAATGGTAATTTTTGGAAAG-ATC
* * * * *
6919883 GGGGTAATATGGTTATTTTTGGTGAA-ACC
1 GGGGAAAAATGGTAATTTTTGG-AAAGATC
* * *
6919912 GGGTTAAAAATGG-AA-TTTTGGAAAGTTTA
1 GGG-GAAAAATGGTAATTTTTGGAAAG-ATC
* *
6919941 GGGGTAAAATGGTAATTTTTGGTGAA-A-C
1 GGGGAAAAATGGTAATTTTTGG-AAAGATC
* *
6919969 TGGGGTTAAAAATGG-AA-TTTTGGAAAGTTT
1 -GGGG--AAAAATGGTAATTTTTGGAAAGATC
* *
6919999 AGGGTAAAATGGTAATTTTT-GATGAA-ATC
1 GGGGAAAAATGGTAATTTTTGGA--AAGATC
*
6920028 GGGGTTAAAAATGG-AA-TTTTGGAAAGTTC
1 GGGG--AAAAATGGTAATTTTTGGAAAGATC
*
6920057 GAGGGTAAAATGGTAATTTT
1 G-GGGAAAAATGGTAATTTT
6920077 CGGACAGTCT
Statistics
Matches: 202, Mismatches: 43, Indels: 73
0.64 0.14 0.23
Matches are distributed among these distances:
27 9 0.04
28 52 0.26
29 63 0.31
30 53 0.26
31 25 0.12
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.34
Consensus pattern (29 bp):
GGGGAAAAATGGTAATTTTTGGAAAGATC
Found at i:6919813 original size:59 final size:59
Alignment explanation
Indices: 6919766--6920076 Score: 454
Period size: 58 Copynumber: 5.3 Consensus size: 59
6919756 GGATGCGCGG
* * *
6919766 GGGGCAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTG
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
* * *
6919825 GGGGTAAAATGGTAATTTTTGATG-ACTCTGGGGTT-AAAATGAAATTTTGGAAAGTTTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATC-GGGGTTAAAAATGGAATTTTGGAAAGTTTA
* * *
6919883 GGGGTAATATGGTTATTTTTGGTGAAA-CCGGGTTAAAAATGGAATTTTGGAAAGTTTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
6919941 GGGGTAAAATGGTAATTTTTGGTGAAA-CTGGGGTTAAAAATGGAATTTTGGAAAGTTTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATC-GGGGTTAAAAATGGAATTTTGGAAAGTTTA
* *
6920000 -GGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTGGAAAG-TTC
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
6920057 GAGGGTAAAATGGTAATTTT
1 G-GGGTAAAATGGTAATTTT
6920077 CGGACAGTCT
Statistics
Matches: 228, Mismatches: 17, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
57 7 0.03
58 145 0.64
59 76 0.33
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.34
Consensus pattern (59 bp):
GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
Found at i:6920063 original size:117 final size:116
Alignment explanation
Indices: 6919766--6920076 Score: 464
Period size: 117 Copynumber: 2.7 Consensus size: 116
6919756 GGATGCGCGG
* * *
6919766 GGGGCAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAG-TTGAGGGTA
**
6919831 AAATGGTAATTTTTGATGACTCTGGGGTTAAAATGAAATTTTGGAAAGTTTA
65 AAATGGTAATTTTTGATGAAACTGGGGTTAAAATGAAATTTTGGAAAGTTTA
* * * *
6919883 GGGGTAATATGGTTATTTTTGGTGAAA-CCGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTGA-GGGTA
* *
6919947 AAATGGTAATTTTTGGTGAAACTGGGGTTAAAAATGGAATTTTGGAAAGTTTA
65 AAATGGTAATTTTTGATGAAACTGGGGTT-AAAATGAAATTTTGGAAAGTTTA
*
6920000 -GGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGAGGGTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT-GAGGGTA
6920064 AAATGGTAATTTT
65 AAATGGTAATTTT
6920077 CGGACAGTCT
Statistics
Matches: 174, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
115 2 0.01
116 80 0.46
117 91 0.52
118 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.34
Consensus pattern (116 bp):
GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTGAGGGTAA
AATGGTAATTTTTGATGAAACTGGGGTTAAAATGAAATTTTGGAAAGTTTA
Found at i:6920090 original size:29 final size:27
Alignment explanation
Indices: 6919802--6920090 Score: 133
Period size: 29 Copynumber: 10.0 Consensus size: 27
6919792 ATCGGGGTTA
* *
6919802 AAAATGGAATTTTGGAAAGTTTGGGGGT
1 AAAATGGAATTTTGGAAAGTCT-AGGGT
* * * *
6919830 AAAATGGTAATTTTTGATGACTCTGGGGTT
1 AAAATGG-AATTTTGGA-AAGTCTAGGG-T
* *
6919860 AAAATGAAATTTTGGAAAGTTTAGGGGT
1 AAAATGGAATTTTGGAAAGTCTA-GGGT
* * *
6919888 AATATGGTTATTTTTGGTGAAA--C-CGGGTT
1 AAAATGG--AATTTT-G-GAAAGTCTAGGG-T
*
6919917 AAAAATGGAATTTTGGAAAGTTTAGGGGT
1 -AAAATGGAATTTTGGAAAGTCTA-GGGT
*
6919946 AAAATGGTAATTTTTGGTGAAA--CTGGGGTT
1 AAAATGG-AA-TTTT-G-GAAAGTCTAGGG-T
*
6919976 AAAAATGGAATTTTGGAAAGTTTAGGGT
1 -AAAATGGAATTTTGGAAAGTCTAGGGT
*
6920004 AAAATGGTAATTTTTGATGAAA-TC-GGGGTT
1 AAAATGG-AA-TTTTG--GAAAGTCTAGGG-T
*
6920034 AAAAATGGAATTTTGGAAAGTTCGAGGGT
1 -AAAATGGAATTTTGGAAAG-TCTAGGGT
*
6920063 AAAATGGTAATTTTCGGACAGTCTAGGG
1 AAAATGG-AATTTT-GGAAAGTCTAGGG
6920091 ACCTATAAAA
Statistics
Matches: 200, Mismatches: 28, Indels: 65
0.68 0.10 0.22
Matches are distributed among these distances:
26 4 0.02
27 16 0.08
28 42 0.21
29 66 0.33
30 44 0.22
31 20 0.10
32 8 0.04
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.34
Consensus pattern (27 bp):
AAAATGGAATTTTGGAAAGTCTAGGGT
Found at i:6920329 original size:162 final size:160
Alignment explanation
Indices: 6920150--6920481 Score: 556
Period size: 162 Copynumber: 2.1 Consensus size: 160
6920140 AGCATCCAGA
* *
6920150 AGTCAAAGGACTAATTTAAAAATCTCAAAAAATTCTTGGGTCAATTTTGTAATTAAGCAAAAGTT
1 AGTCAAAGGACTAATTTAAAAATCTCAAAAAATTCCTGGGTCAATTTTGTAAATAAGCAAAAGTT
**
6920215 GATTTGAGGATTAAATTAAAACAAATTAAAAATGTCAGGGACTAAATGCACAAATAAGCCAAAAA
66 GATTTGAGGATTAAATTAAAACAAATTAAAAATAACAGGGACTAAATGCA-AAATAAGCCAAAAA
*
6920280 GTGACACGTGGCGGCCTCTGGTGCAGTCAAAC
130 -TGACACGTGGCAGCCTCTGGTGCAGTCAAAC
* *
6920312 AGTCAAAGGACTAATTTAAAAATCTCAAAAGATTCCTGGGTCAATTTTGTAAATAATCAAAAGTT
1 AGTCAAAGGACTAATTTAAAAATCTCAAAAAATTCCTGGGTCAATTTTGTAAATAAGCAAAAGTT
* *
6920377 TATTTGAGGATTAAATTAAAACAAATTAAAAATAACAGGGACTAAATGCAAAATGAGCCAAAAAT
66 GATTTGAGGATTAAATTAAAACAAATTAAAAATAACAGGGACTAAATGCAAAATAAGCCAAAAAT
6920442 GACACGTGGCAGCCTCTGGTGCAGTCAAAC
131 GACACGTGGCAGCCTCTGGTGCAGTCAAAC
*
6920472 AGTCGAAGGA
1 AGTCAAAGGA
6920482 TTAAATTGAA
Statistics
Matches: 160, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
160 39 0.24
161 13 0.08
162 108 0.68
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.25
Consensus pattern (160 bp):
AGTCAAAGGACTAATTTAAAAATCTCAAAAAATTCCTGGGTCAATTTTGTAAATAAGCAAAAGTT
GATTTGAGGATTAAATTAAAACAAATTAAAAATAACAGGGACTAAATGCAAAATAAGCCAAAAAT
GACACGTGGCAGCCTCTGGTGCAGTCAAAC
Found at i:6923272 original size:40 final size:40
Alignment explanation
Indices: 6923211--6923318 Score: 94
Period size: 41 Copynumber: 2.7 Consensus size: 40
6923201 CCAAAAATAG
* * *
6923211 CGTTTTT-TCATAAATGTCGCTATTGCTTAAATTTTACGA
1 CGTTTTTCCCATAAACGCCGCTATTGCTTAAATTTTACGA
* * * *
6923250 CGTTTTTCCCATAAACGCCGCTACTAT-TTTACATTTTGCGG
1 CGTTTTTCCCATAAACGCCGCTA-T-TGCTTAAATTTTACGA
* * *
6923291 CGTTTTCCCCATAAACGCTGCTAATGCT
1 CGTTTTTCCCATAAACGCCGCTATTGCT
6923319 CTTTACCTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
39 8 0.15
40 13 0.24
41 32 0.59
42 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (40 bp):
CGTTTTTCCCATAAACGCCGCTATTGCTTAAATTTTACGA
Found at i:6925799 original size:41 final size:41
Alignment explanation
Indices: 6925715--6925912 Score: 229
Period size: 41 Copynumber: 4.9 Consensus size: 41
6925705 ATTTATGGGA
* * * *
6925715 AAACGCCGCTATTGCT-TAACCTTTAGCTGCG-TTTTTCAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
* * * *
6925754 AAACGCCGCTATTACTCTGACCTTTAACGGCGCTTTTTCAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
* * *
6925795 AAACGCTGCTAATGCTTTGACCTTTAGCGGCACTTTCTCAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
* * *
6925836 AAACGTCGCTAATGTTTTGACCTTTAGCGGCGCTTTCTCAT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
* * *
6925877 AAATGCCGCTAATGCTCTGACCTTTAGTGGCACTTT
1 AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTT
6925913 TCCTACAAAT
Statistics
Matches: 136, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 15 0.11
40 12 0.09
41 109 0.80
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.35
Consensus pattern (41 bp):
AAACGCCGCTAATGCTCTGACCTTTAGCGGCGCTTTCTCAT
Found at i:6925941 original size:82 final size:82
Alignment explanation
Indices: 6925771--6925948 Score: 216
Period size: 82 Copynumber: 2.2 Consensus size: 82
6925761 GCTATTACTC
* * * * *
6925771 TGACCTTTAACGGCGCTTTTTCATAAACGCTGCTAATGCTTTGACCTTTAGCGGCACTTTCTCAT
1 TGACCTTTAGCGGCGCTTTCTCATAAACGCCGCTAATGCTCTGACCTTTAGCGGCACTTTCTCAC
* *
6925836 AAACGTCGCTAATGTTT
66 AAACATCGCTAATGCTT
* *
6925853 TGACCTTTAGCGGCGCTTTCTCATAAATGCCGCTAATGCTCTGACCTTTAGTGGCACTTT-TCCT
1 TGACCTTTAGCGGCGCTTTCTCATAAACGCCGCTAATGCTCTGACCTTTAGCGGCACTTTCT-C-
* *
6925917 ACAAATATCGCTATTGCTT
64 ACAAACATCGCTAATGCTT
*
6925936 T-ACCTTTTGCGGC
1 TGACCTTTAGCGGC
6925949 ATTTATGGGA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 1 0.01
82 66 0.80
83 15 0.18
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (82 bp):
TGACCTTTAGCGGCGCTTTCTCATAAACGCCGCTAATGCTCTGACCTTTAGCGGCACTTTCTCAC
AAACATCGCTAATGCTT
Found at i:6925971 original size:40 final size:39
Alignment explanation
Indices: 6925926--6926032 Score: 153
Period size: 40 Copynumber: 2.7 Consensus size: 39
6925916 TACAAATATC
*
6925926 GCTATTGCTTTACCTTTTGCGGCATTTATGGGAAAAC-ACT
1 GCTATTG-TTTACCTTTTGCGGCATTTATGGAAAAACGA-T
*
6925966 GCTATTGATTTACCTTTTGCGGCGTTTATGGAAAAACGAT
1 GCTATTG-TTTACCTTTTGCGGCATTTATGGAAAAACGAT
6926006 GCTATTGTCTTACCTTTTGCGGCATTT
1 GCTATTGT-TTACCTTTTGCGGCATTT
6926033 TCTATCCAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
39 1 0.02
40 59 0.97
41 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (39 bp):
GCTATTGTTTACCTTTTGCGGCATTTATGGAAAAACGAT
Found at i:6926146 original size:14 final size:14
Alignment explanation
Indices: 6926127--6926153 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6926117 TTTTTTTCTA
6926127 GTTTCTTAGTGTTT
1 GTTTCTTAGTGTTT
6926141 GTTTCTTAGTGTT
1 GTTTCTTAGTGTT
6926154 ACCTTCAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.07, G:0.22, T:0.63
Consensus pattern (14 bp):
GTTTCTTAGTGTTT
Found at i:6926828 original size:28 final size:26
Alignment explanation
Indices: 6926795--6926853 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
6926785 TAGTGGATGG
*
6926795 AAAAAAGT-TCAAATACCAATCTAAGA
1 AAAAAAATCTCAAATACCAATCTAA-A
* *
6926821 CAAAAAAATCTTAAGTACCAATCTAAA
1 -AAAAAAATCTCAAATACCAATCTAAA
6926848 AAAAAA
1 AAAAAA
6926854 TTTATAAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.21
27 8 0.29
28 14 0.50
ACGTcount: A:0.61, C:0.15, G:0.05, T:0.19
Consensus pattern (26 bp):
AAAAAAATCTCAAATACCAATCTAAA
Found at i:6929852 original size:17 final size:17
Alignment explanation
Indices: 6929830--6929868 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
6929820 AGGTGGAGAA
* *
6929830 CTTGTTCATTGAGAGTT
1 CTTGTTCATAGAGAATT
*
6929847 CTTGTTCGTAGAGAATT
1 CTTGTTCATAGAGAATT
6929864 CTTGT
1 CTTGT
6929869 CAAGGTGGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.13, G:0.23, T:0.46
Consensus pattern (17 bp):
CTTGTTCATAGAGAATT
Found at i:6933555 original size:36 final size:34
Alignment explanation
Indices: 6933453--6933589 Score: 193
Period size: 34 Copynumber: 4.0 Consensus size: 34
6933443 GGGCACATAT
* * * *
6933453 TTTTTGGCGTAACATTTTAAAACATAATACTTAC
1 TTTTCGGCCTAACATTTTAAAATATAGTACTTAC
* *
6933487 TTTTTGGTCTAACATTTTAAAATATAGTACTTAC
1 TTTTCGGCCTAACATTTTAAAATATAGTACTTAC
*
6933521 TTTTCGGCCTAATATTTTAAAATATATAGTACTTAC
1 TTTTCGGCCTAACATTTT-AAA-ATATAGTACTTAC
6933557 TTTTCGGCCTAACATTTTAAAATATAGTACTTA
1 TTTTCGGCCTAACATTTTAAAATATAGTACTTA
6933590 TTATATTTTT
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
34 57 0.61
35 6 0.06
36 30 0.32
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.44
Consensus pattern (34 bp):
TTTTCGGCCTAACATTTTAAAATATAGTACTTAC
Found at i:6936366 original size:12 final size:12
Alignment explanation
Indices: 6936349--6936382 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
6936339 TGGAGATAAG
6936349 GTCACACGGGCA
1 GTCACACGGGCA
6936361 GTCACACGGGCA
1 GTCACACGGGCA
*
6936373 GCCACACGGG
1 GTCACACGGG
6936383 TGTGTGAGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.35, G:0.35, T:0.06
Consensus pattern (12 bp):
GTCACACGGGCA
Found at i:6938922 original size:48 final size:48
Alignment explanation
Indices: 6938851--6938946 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
6938841 ACCCATAACC
6938851 CCGATCCATATAGTGGTTAGTCTTTTAAAGAAATGTGTTTTGAATCTG
1 CCGATCCATATAGTGGTTAGTCTTTTAAAGAAATGTGTTTTGAATCTG
6938899 CCGATCCATATAGTGGTTAGTCTTTTAAAGAAATGTGTTTTGAATCTG
1 CCGATCCATATAGTGGTTAGTCTTTTAAAGAAATGTGTTTTGAATCTG
6938947 AGCAGATAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (48 bp):
CCGATCCATATAGTGGTTAGTCTTTTAAAGAAATGTGTTTTGAATCTG
Found at i:6946355 original size:12 final size:13
Alignment explanation
Indices: 6946329--6946360 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
6946319 CTAATCCCAA
6946329 TTTT-TTTATTGT
1 TTTTATTTATTGT
6946341 TTTTATTTATT-T
1 TTTTATTTATTGT
6946353 TTTTATTT
1 TTTTATTT
6946361 TAGCATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.84
Consensus pattern (13 bp):
TTTTATTTATTGT
Found at i:6946373 original size:21 final size:22
Alignment explanation
Indices: 6946327--6946375 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
6946317 GTCTAATCCC
***
6946327 AATTTTTTTATTGTTTTTATTT
1 AATTTTTTTATTGTTAGCATTT
6946349 -ATTTTTTTATT-TTAGCATTT
1 AATTTTTTTATTGTTAGCATTT
6946369 AATTTTT
1 AATTTTT
6946376 ATTTTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (22 bp):
AATTTTTTTATTGTTAGCATTT
Found at i:6947880 original size:25 final size:26
Alignment explanation
Indices: 6947843--6947893 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
6947833 AGACGATAAA
6947843 GATATTCTATCT-GGCTCGTAAGAGC
1 GATATTCTATCTGGGCTCGTAAGAGC
* *
6947868 GATATTCTGTCTGGGCTCGTTAGAGC
1 GATATTCTATCTGGGCTCGTAAGAGC
6947894 TAAAATCTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (26 bp):
GATATTCTATCTGGGCTCGTAAGAGC
Found at i:6956306 original size:20 final size:20
Alignment explanation
Indices: 6956289--6956326 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6956279 CTAATGATTG
6956289 TTGGAAATGAGAAATGATAA
1 TTGGAAATGAGAAATGATAA
*
6956309 TTGGAAATGTGAAA-GATA
1 TTGGAAATGAGAAATGATA
6956327 GGAATGACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.47, C:0.00, G:0.26, T:0.26
Consensus pattern (20 bp):
TTGGAAATGAGAAATGATAA
Found at i:6957825 original size:129 final size:130
Alignment explanation
Indices: 6957650--6957905 Score: 433
Period size: 130 Copynumber: 2.0 Consensus size: 130
6957640 CGTATTATCC
** *
6957650 CTCCTATCTCTAATCTGTCTATTTCATCTATTGTACTTTTTTAATAACT-ATGCCGAATCCCTTT
1 CTCCTATCTCTAATCTGTCTATCGCATCTATTGTACTTTTTTAATAACTGATGCCAAATCCCTTT
* * *
6957714 CCACAATGACTGATGCATATCTGTTCTGATGCCCAACTGAGGCTGTCGTAAGACATGCCAAATCT
66 CCACAATGACTGATGCATATCTGTTCTAATGCCCAACTGAAGCTATCGTAAGACATGCCAAATCT
* *
6957779 CTCCTATCTCTGATTTGTCTATCGCATCTATTGTACTTTTTTAATAACTGATGCCAAATCCCTTT
1 CTCCTATCTCTAATCTGTCTATCGCATCTATTGTACTTTTTTAATAACTGATGCCAAATCCCTTT
6957844 CCACAATGACTGATGCATATCTGTTCTAATGCCCAACTGAAGCTATCGTAAGACATGCCAAA
66 CCACAATGACTGATGCATATCTGTTCTAATGCCCAACTGAAGCTATCGTAAGACATGCCAAA
6957906 GCCTCAACCA
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
129 45 0.38
130 73 0.62
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (130 bp):
CTCCTATCTCTAATCTGTCTATCGCATCTATTGTACTTTTTTAATAACTGATGCCAAATCCCTTT
CCACAATGACTGATGCATATCTGTTCTAATGCCCAACTGAAGCTATCGTAAGACATGCCAAATCT
Found at i:6958413 original size:261 final size:261
Alignment explanation
Indices: 6957944--6958465 Score: 873
Period size: 261 Copynumber: 2.0 Consensus size: 261
6957934 CCCTATGAAT
** * *
6957944 TTGCATTACCACTGCTTTGATTTCACCCTATGCATTCCTAACCATAACGCCAGAAGTGGAGACCA
1 TTGCATTACCACTGCCCTGATTTCACCCTATGCATCCCTAACCATAACGCCAGAAGCGGAGACCA
*
6958009 ATCGATGCCTATCATAGGCAGCGTCAAAGTTTAACTTAAACGTGGCTCCTTGGGGTGGCTCCCAA
66 ACCGATGCCTATCATAGGCAGCGTCAAAGTTTAACTTAAACGTGGCTCCTTGGGGTGGCTCCCAA
* *
6958074 ACAAGGTCTTCAAATATATTGGTAAGAGTTTTTTCTTCACTTTCATCAATTGTTTTAATATATTG
131 ACAAGGCCTTCAAATATATTGGTAAGAGTTTTTTCTTCACTTTCATCAATTATTTTAATATATTG
* *
6958139 TTTAACAAACAAGGCTATTTCTAACCTAGTACCTCTTTTTCCTTTATGCACAGCCCTATTTCTAT
196 TTTAACAAACAAGGCTATTTCTAACCTAGTACCTCTTTTTCCTTCATGCACACCCCTATTTCTAT
6958204 C
261 C
* * * *
6958205 TTGCTTTACCACTGCCCTGATTTCACCCTGTGCATCCCTAACCATAACGCCAGAAGCGGAGATCG
1 TTGCATTACCACTGCCCTGATTTCACCCTATGCATCCCTAACCATAACGCCAGAAGCGGAGACCA
*
6958270 ACCGATGCCTATCATAGGTAGCGTCAAAGTTTAACTTAAACGTGGCTCCTTGGGGTGGCTCCCAA
66 ACCGATGCCTATCATAGGCAGCGTCAAAGTTTAACTTAAACGTGGCTCCTTGGGGTGGCTCCCAA
* * *
6958335 ACAAGGCCTTTAAATCTATTGGTAAGAGTTTTTTCTTCACTTTCGTCAATTATTTTAATATATTG
131 ACAAGGCCTTCAAATATATTGGTAAGAGTTTTTTCTTCACTTTCATCAATTATTTTAATATATTG
* *
6958400 TTTAACAAACAAGGCTATTTCTAACCTAGTACCTCTTTTTCCTTCATGCATACCCCTGTTTCTAT
196 TTTAACAAACAAGGCTATTTCTAACCTAGTACCTCTTTTTCCTTCATGCACACCCCTATTTCTAT
6958465 C
261 C
6958466 CATCCAAATG
Statistics
Matches: 242, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
261 242 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.34
Consensus pattern (261 bp):
TTGCATTACCACTGCCCTGATTTCACCCTATGCATCCCTAACCATAACGCCAGAAGCGGAGACCA
ACCGATGCCTATCATAGGCAGCGTCAAAGTTTAACTTAAACGTGGCTCCTTGGGGTGGCTCCCAA
ACAAGGCCTTCAAATATATTGGTAAGAGTTTTTTCTTCACTTTCATCAATTATTTTAATATATTG
TTTAACAAACAAGGCTATTTCTAACCTAGTACCTCTTTTTCCTTCATGCACACCCCTATTTCTAT
C
Found at i:6964119 original size:18 final size:19
Alignment explanation
Indices: 6964096--6964150 Score: 53
Period size: 18 Copynumber: 3.0 Consensus size: 19
6964086 TCTCGATTAA
6964096 AGCATATAGCTATGATGAT
1 AGCATATAGCTATGATGAT
* * *
6964115 A-CATAT-GTCT-TGGTTAG
1 AGCATATAG-CTATGATGAT
6964132 AGCATATAGCTATGATGAT
1 AGCATATAGCTATGATGAT
6964151 GTATATGTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 8
0.65 0.15 0.20
Matches are distributed among these distances:
17 6 0.23
18 14 0.54
19 6 0.23
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.35
Consensus pattern (19 bp):
AGCATATAGCTATGATGAT
Found at i:6964136 original size:36 final size:36
Alignment explanation
Indices: 6964079--6964282 Score: 230
Period size: 36 Copynumber: 5.6 Consensus size: 36
6964069 TCAAAGGAAG
* * *
6964079 GCATATGTCTCGATTAAAGCATATAGCTATGATGAT
1 GCATATGTCTCGGTTAGAGCATATAGCTATGATGTT
* * *
6964115 ACATATGTCTTGGTTAGAGCATATAGCTATGATGAT
1 GCATATGTCTCGGTTAGAGCATATAGCTATGATGTT
* * *
6964151 GTATATGTCTCAGTTAGAGCATATAACTATGATGTTT
1 GCATATGTCTCGGTTAGAGCATATAGCTATGATG-TT
* * *
6964188 GCATATGTCTCGGTTAGAGGATATTGCTATAATGTT
1 GCATATGTCTCGGTTAGAGCATATAGCTATGATGTT
*
6964224 GCATATGTCTCGGTTAGAGCATATTGCTACT-ATGTT
1 GCATATGTCTCGGTTAGAGCATATAGCTA-TGATGTT
* * * *
6964260 ACTTACGTCTTGGTTAGAGCATA
1 GCATATGTCTCGGTTAGAGCATA
6964283 ATGTTATATG
Statistics
Matches: 145, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
36 115 0.79
37 30 0.21
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (36 bp):
GCATATGTCTCGGTTAGAGCATATAGCTATGATGTT
Found at i:6964230 original size:73 final size:71
Alignment explanation
Indices: 6964079--6964282 Score: 212
Period size: 73 Copynumber: 2.8 Consensus size: 71
6964069 TCAAAGGAAG
* * *
6964079 GCATATGTCTCGATTAAAGCATATAGCTATGATGATACATATGTCTTGGTTAGAGCATATAGCTA
1 GCATATGTCTCG-TTAGAGCATATAACTATGATGATACATATGTCTCGGTTAGAGCATATAGCTA
*
6964144 TGATGAT
65 TAATGAT
* * * * *
6964151 GTATATGTCTCAGTTAGAGCATATAACTATGATGTTTGCATATGTCTCGGTTAGAGGATATTGCT
1 GCATATGTCTC-GTTAGAGCATATAACTATGATG-ATACATATGTCTCGGTTAGAGCATATAGCT
*
6964216 ATAATGTT
64 ATAATGAT
** * * * *
6964224 GCATATGTCTCGGTTAGAGCATATTGCTACT-ATGTTACTTACGTCTTGGTTAGAGCATA
1 GCATATGTCTC-GTTAGAGCATATAACTA-TGATGATACATATGTCTCGGTTAGAGCATA
6964283 ATGTTATATG
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
72 49 0.45
73 60 0.55
74 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (71 bp):
GCATATGTCTCGTTAGAGCATATAACTATGATGATACATATGTCTCGGTTAGAGCATATAGCTAT
AATGAT
Found at i:6964312 original size:37 final size:37
Alignment explanation
Indices: 6964230--6964433 Score: 189
Period size: 37 Copynumber: 5.5 Consensus size: 37
6964220 TGTTGCATAT
* * **
6964230 GTCTCGGTTAGAGCATATTGCTACTATGTTA--CTTAC
1 GTCTCGGTTAGAGCATAATGTTA-TATGGAAGGCTTAC
*
6964266 GTCTTGGTTAGAGCATAATGTTATATGGAAGGCTTAC
1 GTCTCGGTTAGAGCATAATGTTATATGGAAGGCTTAC
* * * * *
6964303 ATCTCGGTTATAGCGTAATGGTATATGGAAGGTTTAC
1 GTCTCGGTTAGAGCATAATGTTATATGGAAGGCTTAC
* *
6964340 GTCTCGGTTAGAGCGTAATGTTATATGGAAGGCTTAT
1 GTCTCGGTTAGAGCATAATGTTATATGGAAGGCTTAC
** * * *** *
6964377 GTCTCGGTTAGAGGGTAATGCTATGT-GATTTACTTAT
1 GTCTCGGTTAGAGCATAATGTTATATGGA-AGGCTTAC
6964414 GTCTCGGTTAGAGCATAATG
1 GTCTCGGTTAGAGCATAATG
6964434 CCATTTAAGC
Statistics
Matches: 141, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
35 5 0.04
36 22 0.16
37 114 0.81
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (37 bp):
GTCTCGGTTAGAGCATAATGTTATATGGAAGGCTTAC
Found at i:6964418 original size:74 final size:74
Alignment explanation
Indices: 6964227--6964433 Score: 242
Period size: 74 Copynumber: 2.8 Consensus size: 74
6964217 TAATGTTGCA
* * *
6964227 TATGTCTCGGTTAGAGCATATTGCTACTATG--TTACTTACGTCTTGGTTAGAGCATAATGTTAT
1 TATGTCTCGGTTAGAGCGTAATGCTA-TATGATTTACTTACGTCTCGGTTAGAGCATAATGTTAT
6964290 ATGGAAGGCT
65 ATGGAAGGCT
** * * ** *
6964300 TACATCTCGGTTATAGCGTAATGGTATATGGAAGGT--TTACGTCTCGGTTAGAGCGTAATGTTA
1 TATGTCTCGGTTAGAGCGTAATGCTATAT-G-ATTTACTTACGTCTCGGTTAGAGCATAATGTTA
6964363 TATGGAAGGCT
64 TATGGAAGGCT
* * *
6964374 TATGTCTCGGTTAGAGGGTAATGCTATGTGATTTACTTATGTCTCGGTTAGAGCATAATG
1 TATGTCTCGGTTAGAGCGTAATGCTATATGATTTACTTACGTCTCGGTTAGAGCATAATG
6964434 CCATTTAAGC
Statistics
Matches: 109, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
72 5 0.05
73 22 0.20
74 81 0.74
76 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.37
Consensus pattern (74 bp):
TATGTCTCGGTTAGAGCGTAATGCTATATGATTTACTTACGTCTCGGTTAGAGCATAATGTTATA
TGGAAGGCT
Found at i:6964434 original size:37 final size:37
Alignment explanation
Indices: 6964082--6964434 Score: 126
Period size: 37 Copynumber: 9.6 Consensus size: 37
6964072 AAGGAAGGCA
* * *
6964082 TATGTCTCGATTAAAGCAT-ATAGCTATGATGA--TACA
1 TATGTCTCGGTTAGAGCATAAT-GCTATG-TGATTTACT
* *
6964118 TATGTCTTGGTTAGAGCAT-ATAGCTATGATGATGTA--
1 TATGTCTCGGTTAGAGCATAAT-GCTATG-TGATTTACT
* * * *
6964154 TATGTCTCAGTTAGAGCAT-ATAACTATGATG-TTTGCA
1 TATGTCTCGGTTAGAGCATAAT-GCTATG-TGATTTACT
* * * * *
6964191 TATGTCTCGGTTAGAGGATATTGCTA--TAATGTTGCA
1 TATGTCTCGGTTAGAGCATAATGCTATGTGAT-TTACT
* *
6964227 TATGTCTCGGTTAGAGCATATTGCTA-CT-ATGTTACT
1 TATGTCTCGGTTAGAGCATAATGCTATGTGAT-TTACT
* * * * ***
6964263 TACGTCTTGGTTAGAGCATAATGTTATATGGA-AGGCT
1 TATGTCTCGGTTAGAGCATAATGCTATGT-GATTTACT
** * * * * **
6964300 TACATCTCGGTTATAGCGTAATGGTATATGGAAGGT--T
1 TATGTCTCGGTTAGAGCATAATGCTATGT-G-ATTTACT
* * * * ***
6964337 TACGTCTCGGTTAGAGCGTAATGTTATATGGA-AGGCT
1 TATGTCTCGGTTAGAGCATAATGCTATGT-GATTTACT
**
6964374 TATGTCTCGGTTAGAGGGTAATGCTATGTGATTTACT
1 TATGTCTCGGTTAGAGCATAATGCTATGTGATTTACT
6964411 TATGTCTCGGTTAGAGCATAATGC
1 TATGTCTCGGTTAGAGCATAATGC
6964435 CATTTAAGCT
Statistics
Matches: 256, Mismatches: 45, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
34 1 0.00
35 3 0.01
36 118 0.46
37 129 0.50
38 4 0.02
39 1 0.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (37 bp):
TATGTCTCGGTTAGAGCATAATGCTATGTGATTTACT
Found at i:6969099 original size:29 final size:30
Alignment explanation
Indices: 6969010--6969172 Score: 130
Period size: 29 Copynumber: 5.7 Consensus size: 30
6969000 TTGGATGCTC
* * *
6969010 AGGGG-AAAATGGTAATTTTTAGAGATT-T
1 AGGGGTAAAATGGTAATTTTTGGACATTCG
* * *
6969038 AGGGATAAAATGATAATTTTTGGATACTT--
1 AGGGGTAAAATGGTAATTTTTGGACA-TTCG
6969067 AGGGGTAAAAAT-GTAA-TTTTGGACATTCG
1 AGGGGT-AAAATGGTAATTTTTGGACATTCG
* * * *
6969096 A-GGGTACAATGGTAATTTTTTGAAACTCG
1 AGGGGTAAAATGGTAATTTTTGGACATTCG
*
6969125 -GGGGCAAAAT-GTAATTTTTTGGACATTC-
1 AGGGGTAAAATGGTAA-TTTTTGGACATTCG
6969153 AGGGGTAAAATGGTAATTTT
1 AGGGGTAAAATGGTAATTTT
6969173 GGAAAGTTTG
Statistics
Matches: 107, Mismatches: 17, Indels: 21
0.74 0.12 0.14
Matches are distributed among these distances:
27 6 0.06
28 24 0.22
29 66 0.62
30 11 0.10
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.35
Consensus pattern (30 bp):
AGGGGTAAAATGGTAATTTTTGGACATTCG
Found at i:6969107 original size:86 final size:86
Alignment explanation
Indices: 6969017--6969175 Score: 198
Period size: 86 Copynumber: 1.8 Consensus size: 86
6969007 CTCAGGGGAA
* * * * *
6969017 AATGGTAATTTTTAGAGATTTAGGGATAAAATGATAA-TTTTTGGATACTT-AGGGGTAAAAAT-
1 AATGGTAATTTTTAGAAACTCAGGGACAAAATG-TAATTTTTTGGACA-TTCAGGGGT-AAAATG
6969079 GTAATTTTGGACATTCGAGGGTAC
63 GTAATTTTGGACATTCGAGGGTAC
* * *
6969103 AATGGTAATTTTTTGAAACTCGGGGGCAAAATGTAATTTTTTGGACATTCAGGGGTAAAATGGTA
1 AATGGTAATTTTTAGAAACTCAGGGACAAAATGTAATTTTTTGGACATTCAGGGGTAAAATGGTA
6969168 ATTTTGGA
66 ATTTTGGA
6969176 AAGTTTGGGG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
85 10 0.16
86 52 0.84
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (86 bp):
AATGGTAATTTTTAGAAACTCAGGGACAAAATGTAATTTTTTGGACATTCAGGGGTAAAATGGTA
ATTTTGGACATTCGAGGGTAC
Found at i:6969191 original size:58 final size:58
Alignment explanation
Indices: 6969015--6969294 Score: 221
Period size: 57 Copynumber: 4.8 Consensus size: 58
6969005 TGCTCAGGGG
* * * * * * *
6969015 AAAATGGTAATTTTTAGAGATTTAGGGATAAAATGATAATTTTTGGATACTTAGGGGTA
1 AAAAT-GTAATTTTTGGACATTCAGGGGTAAAATGGTAATTTTTGGAAAGTTAGGGGTA
* * * * **
6969074 AAAATGTAA-TTTTGGACATTC-GAGGGTACAATGGTAATTTTTTGAAA-CTCGGGGGC
1 AAAATGTAATTTTTGGACATTCAG-GGGTAAAATGGTAATTTTTGGAAAGTTAGGGGTA
*
6969130 AAAATGTAATTTTTTGGACATTCAGGGGTAAAATGGTAA-TTTTGGAAAGTTTGGGGTCA
1 AAAATGTAA-TTTTTGGACATTCAGGGGTAAAATGGTAATTTTTGGAAAGTTAGGGGT-A
* * ** * * * *
6969189 AAAATTGGATTTTTTTAAAAGTTCAGGGGTAAAATGTTAA-TTTTAGAAAGTTCAGAGG-A
1 AAAA-TGTAATTTTTGGACA-TTCAGGGGTAAAATGGTAATTTTTGGAAAGTT-AGGGGTA
* * * *
6969248 AAAATATAATTTTTGGATATCCAGGGGTAAAATAGTAATTTTTGGAA
1 AAAATGTAATTTTTGGACATTCAGGGGTAAAATGGTAATTTTTGGAA
6969295 GTTCGGATGC
Statistics
Matches: 174, Mismatches: 37, Indels: 21
0.75 0.16 0.09
Matches are distributed among these distances:
56 15 0.09
57 52 0.30
58 50 0.29
59 22 0.13
60 32 0.18
61 3 0.02
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.35
Consensus pattern (58 bp):
AAAATGTAATTTTTGGACATTCAGGGGTAAAATGGTAATTTTTGGAAAGTTAGGGGTA
Found at i:6969241 original size:29 final size:29
Alignment explanation
Indices: 6969150--6969260 Score: 86
Period size: 29 Copynumber: 3.8 Consensus size: 29
6969140 TTTTTGGACA
* *
6969150 TTCAGGGGTAAAATGGTAATTTTGGAAAG
1 TTCAGGGGTAAAATGTTAATTTTAGAAAG
* *
6969179 TT-TGGGGTCAAAAATTGGATT-TTTTTA-AAAG
1 TTCAGGGGT--AAAA-T-G-TTAATTTTAGAAAG
6969210 TTCAGGGGTAAAATGTTAATTTTAGAAAG
1 TTCAGGGGTAAAATGTTAATTTTAGAAAG
* * *
6969239 TTCAGAGGAAAAAT-ATAATTTT
1 TTCAGGGGTAAAATGTTAATTTT
6969261 TGGATATCCA
Statistics
Matches: 65, Mismatches: 9, Indels: 17
0.71 0.10 0.19
Matches are distributed among these distances:
27 2 0.03
28 18 0.28
29 19 0.29
30 8 0.12
31 7 0.11
32 10 0.15
33 1 0.02
ACGTcount: A:0.37, C:0.04, G:0.23, T:0.36
Consensus pattern (29 bp):
TTCAGGGGTAAAATGTTAATTTTAGAAAG
Found at i:6969308 original size:29 final size:29
Alignment explanation
Indices: 6969219--6969381 Score: 86
Period size: 29 Copynumber: 5.6 Consensus size: 29
6969209 GTTCAGGGGT
* * *
6969219 AAAATGTTAATTTTAGAAAGTTC-AGAGGA
1 AAAATG-TAATTTTTGGAAGTTCGAGAGCA
* * * **
6969248 AAAATATAATTTTTGG-A-TATCCAGGGGT
1 AAAATGTAATTTTTGGAAGT-TCGAGAGCA
6969276 AAAATAGTAATTTTTGGAAGTTCG-GATGCA
1 AAAAT-GTAATTTTTGGAAGTTCGAGA-GCA
* * *
6969306 AAAATGGGATTTTTTGGAAGTTCGAGAG-T
1 AAAAT-GTAATTTTTGGAAGTTCGAGAGCA
* ** **
6969335 AAAATGTAATTTTTAAGAAGTTTAAG-GTT
1 AAAATGTAATTTTT-GGAAGTTCGAGAGCA
6969364 AAAATGTAATTTTTGGAA
1 AAAATGTAATTTTTGGAA
6969382 AATTTAGGGG
Statistics
Matches: 105, Mismatches: 20, Indels: 19
0.73 0.14 0.13
Matches are distributed among these distances:
26 1 0.01
27 3 0.03
28 28 0.27
29 44 0.42
30 26 0.25
31 3 0.03
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.36
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAGTTCGAGAGCA
Found at i:6969392 original size:117 final size:117
Alignment explanation
Indices: 6969130--6969416 Score: 286
Period size: 117 Copynumber: 2.4 Consensus size: 117
6969120 ACTCGGGGGC
* * *
6969130 AAAATGTAATTTTTTGGACATTCAGGGGTAAAATGGTAA-TTTTGGAAAGTTTGGGGTCAAAAAT
1 AAAATGTAA-TTTTTGGAAATTCAGGGGTAAAATAGTAATTTTTGG-AAGTTCGGGGTCAAAAAT
* *
6969194 TGGATTTTTTTAAAAGTTCAGGGGTAAAATGTTAATTTTAGAAAGTTCAGAGGA
64 GGGATTTTTTTAAAAGTTCAGGAGTAAAATGTTAATTTTAGAAAGTTCAGAGGA
* * * *
6969248 AAAATATAATTTTTGGATATCCAGGGGTAAAATAGTAATTTTTGGAAGTTC-GGATGCAAAAATG
1 AAAATGTAATTTTTGGAAATTCAGGGGTAAAATAGTAATTTTTGGAAGTTCGGGGT-CAAAAATG
** * *
6969312 GGA-TTTTTTGGAAGTTC-GAGAGTAAAATG-TAATTTTTA-AGAAGTTTA-AGGTT
65 GGATTTTTTTAAAAGTTCAG-GAGTAAAATGTTAA-TTTTAGA-AAGTTCAGAGG-A
*
6969364 AAAATGTAATTTTTGGAAAATTTAGGGGTCAAAATATGT--TTTTTGGATAGTTC
1 AAAATGTAATTTTTGG-AAATTCAGGGGT-AAAATA-GTAATTTTTGGA-AGTTC
6969417 AGGGACCTTT
Statistics
Matches: 143, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
115 8 0.06
116 50 0.35
117 58 0.41
118 25 0.17
119 2 0.01
ACGTcount: A:0.36, C:0.04, G:0.23, T:0.37
Consensus pattern (117 bp):
AAAATGTAATTTTTGGAAATTCAGGGGTAAAATAGTAATTTTTGGAAGTTCGGGGTCAAAAATGG
GATTTTTTTAAAAGTTCAGGAGTAAAATGTTAATTTTAGAAAGTTCAGAGGA
Found at i:6971160 original size:17 final size:17
Alignment explanation
Indices: 6971138--6971192 Score: 83
Period size: 17 Copynumber: 3.1 Consensus size: 17
6971128 CAATATTTCA
6971138 AATTTTAAATTTAAAAT
1 AATTTTAAATTTAAAAT
6971155 AATTTTAAATTTAAAAAAT
1 AATTTTAAATTT--AAAAT
*
6971174 AAATTTAAATTTAAAAT
1 AATTTTAAATTTAAAAT
6971191 AA
1 AA
6971193 AAAATGGGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
17 19 0.54
19 16 0.46
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTTTAAATTTAAAAT
Found at i:6971174 original size:19 final size:19
Alignment explanation
Indices: 6971138--6971189 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
6971128 CAATATTTCA
6971138 AATTTTAAATTT--AAAAT
1 AATTTTAAATTTAAAAAAT
6971155 AATTTTAAATTTAAAAAAT
1 AATTTTAAATTTAAAAAAT
*
6971174 AAATTTAAATTTAAAA
1 AATTTTAAATTTAAAA
6971190 TAAAAAATGG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 12 0.38
19 20 0.62
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTTTAAATTTAAAAAAT
Found at i:6972000 original size:209 final size:211
Alignment explanation
Indices: 6971587--6972816 Score: 1639
Period size: 209 Copynumber: 5.9 Consensus size: 211
6971577 TTTTACTAGA
* ** ** * * ** *
6971587 AAGACGGATTTGGTTCACTTCTCTGCGTCTTTTCAG-GAAGATGACTATTTTATTGCTTCAACCT
1 AAGACGGATCTGGTTCACTTCTCTGTATCTCATCAGAGAAGGTAACTGCTTTATTGCTTCGACCT
* * * * *
6971651 GCCTT-TCCGTATCTTATCGGGAAGCTGGGGTTCGAAGTTTTGCTCACATCGAGCCTTGGTTTCA
66 G-CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCA
* * *
6971715 TTGATTTGGTCTGCTTCTCAGTATCTCATCA-AAATGATGACCGCATCACTTGTTTTGA-CCTAC
130 TTGATTTGGTCTACTTCTTAGTATCTCATCAGGAA-GATGACCGCATCACTTGTTTTGATCC-AC
*
6971778 TTCTCTATGTCTCATCAGG
193 TTCTCTGTGTCTCATCAGG
* *
6971797 AATACGGGTCTGGTTCACTTCT-TGTATCTCATCAGAG-AGGTAACTGCTTTATTGCTTCGACCT
1 AAGACGGATCTGGTTCACTTCTCTGTATCTCATCAGAGAAGGTAACTGCTTTATTGCTTCGACCT
* * * * *
6971860 GCTTCTCAGTATCTCATCAAGAAGTTGGGGTTCAAAGTTTCGCTTACAGCGAGCTTTGGTTTCAT
66 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCAT
* *
6971925 TGATTTGGTCTACTTCTTAGTATCTCATCAGGCAGATGACTGCATCACTTGTTTTGATCCACTTC
131 TGATTTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTGATCCACTTC
6971990 TCTGTGTCTCATCAGG
196 TCTGTGTCTCATCAGG
* *
6972006 AAGACGGATCTGGTTCACTTCTCTGTATCTCATCAG-GAAGGTAACCGCTTTATTGCTTCGATCT
1 AAGACGGATCTGGTTCACTTCTCTGTATCTCATCAGAGAAGGTAACTGCTTTATTGCTTCGACCT
* * * * * *
6972070 GCTTCTTAGTATCTCATCAGGAAGTTGGGGTTCGAAGATTT-GCTTACTTTGAGC-CTGGTTTCA
66 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAG-TTTCGCTCACATCGAGCTTTGGTTTCA
* *
6972133 TTGATTTGGTCTACTTTTTAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTT
130 TTGATTTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTGATCCACTT
6972198 CTCTGTGTCTCATCAGG
195 CTCTGTGTCTCATCAGG
* *
6972215 AATACGGATCTGGTTCACTTCTCTGTATCTCATCA-AGAAGGTAACTGCTTTATTTCTTCGACCT
1 AAGACGGATCTGGTTCACTTCTCTGTATCTCATCAGAGAAGGTAACTGCTTTATTGCTTCGACCT
* *
6972279 GCTTCTTAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATCGAGCTTTTGTTTCAT
66 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCAT
*
6972344 TGATTTGGTCTACTTCTTAGTATCTTATCAGGAAGATGACCGCATCACTTGTTTTGAT-CACTTC
131 TGATTTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTGATCCACTTC
*
6972408 TCTATGTCTCATCAGG
196 TCTGTGTCTCATCAGG
* *
6972424 AAGACGGATCTGATTCACTTCTTTGTATCTCATCAG-GAAGGTAACTGCTTTATTGCTTCGACCT
1 AAGACGGATCTGGTTCACTTCTCTGTATCTCATCAGAGAAGGTAACTGCTTTATTGCTTCGACCT
* * * * * *
6972488 ACTTCTCAGTATCTTATCAGGAAGCTGGGGTTCGAAGATTT-GCTCACTTTGAGC-CTGGTTCCA
66 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAG-TTTCGCTCACATCGAGCTTTGGTTTCA
* * * * * *
6972551 TTGATTTGGTCTACTTCTCAATATCTCATCAAGAAGATGACCGCCTCACTTGTTTTAATCCGCTT
130 TTGATTTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTGATCCACTT
*
6972616 CTCTGTATCTCATCAGG
195 CTCTGTGTCTCATCAGG
* * * **
6972633 AAGACGGATCTGATTCACTTCTCTGTATCTTATCA-AAAAGGTAACCACTTTATTGCTTCGACCT
1 AAGACGGATCTGGTTCACTTCTCTGTATCTCATCAGAGAAGGTAACTGCTTTATTGCTTCGACCT
* * *
6972697 ACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATTGACCTTT-GTTTCAT
66 GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCAT
* * * * *
6972761 TGAGTTGGTATACTTCTCT-GTATCTCATCAAGAAGATGACCGCCTCACTTATTTTG
131 TGATTTGGTCTACTTCT-TAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTG
6972817 GATAACTACA
Statistics
Matches: 909, Mismatches: 94, Indels: 35
0.88 0.09 0.03
Matches are distributed among these distances:
208 68 0.07
209 667 0.73
210 171 0.19
211 3 0.00
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.37
Consensus pattern (211 bp):
AAGACGGATCTGGTTCACTTCTCTGTATCTCATCAGAGAAGGTAACTGCTTTATTGCTTCGACCT
GCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATCGAGCTTTGGTTTCAT
TGATTTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTGATCCACTTC
TCTGTGTCTCATCAGG
Found at i:6973408 original size:50 final size:49
Alignment explanation
Indices: 6973332--6973785 Score: 324
Period size: 50 Copynumber: 9.5 Consensus size: 49
6973322 TGGAGTCGGA
* * * * **
6973332 TTCGCCGTTATGGCCTCAATGC-TTCCCATAATATCTTTTAAGGTACCAGG
1 TTCGCCGTTACGGCCTCAA-CCTTTCCCATCACATCTTTT-AGGTACTGGG
* **
6973382 TTCGTCGTTGTGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACTGGG
1 TTCGCCGTTACGGCCTCAACCTTTCCCATCACATCTT-TTAGGTACTGGG
* * *
6973432 TTCACCGTTGCGGCCTCGACCTTTCCCATCACATCTTTTTAGGTACTGGG
1 TTCGCCGTTACGGCCTCAACCTTTCCCATCACATC-TTTTAGGTACTGGG
**
6973482 TTCGCCGTTACGATCTCAACCTTTCCCATCACATCTTCTTAGGT--T---
1 TTCGCCGTTACGGCCTCAACCTTTCCCATCACATCTT-TTAGGTACTGGG
* * * *
6973527 TT-ACCGTTGCGGCCTCGACCTTTCCCATCACATCTTCTTAAGTACTGGG
1 TTCGCCGTTACGGCCTCAACCTTTCCCATCACATCTT-TTAGGTACTGGG
** * *
6973576 TTCGCTATTACAGTCTCAACCTTTCCCATCACATCTTCTTAGG---T---
1 TTCGCCGTTACGGCCTCAACCTTTCCCATCACATCTT-TTAGGTACTGGG
* * * *
6973620 TTC-TCGTTGCGGCCTCAACTTTTCCCATTACATCTTCTTAGGTA-TCGGG
1 TTCGCCGTTACGGCCTCAACCTTTCCCATCACATCTT-TTAGGTACT-GGG
* * * *
6973669 TTCACCATTGCGGCCTCAACCTTTTCCATCACAT-TTTCT---TA---GG
1 TTCGCCGTTACGGCCTCAACCTTTCCCATCACATCTTT-TAGGTACTGGG
** *
6973712 TTTACCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACTGGG
1 TTCGCCGTTACGGCCTCAACCTTTCCCATCACATCTT-TTAGGTACTGGG
* *
6973762 TTCACTGTTACGGCCGT-AACCTTT
1 TTCGCCGTTACGGCC-TCAACCTTT
6973786 TCCTGTCAAA
Statistics
Matches: 328, Mismatches: 49, Indels: 54
0.76 0.11 0.13
Matches are distributed among these distances:
43 64 0.20
44 41 0.12
45 4 0.01
46 3 0.01
47 3 0.01
48 2 0.01
49 11 0.03
50 195 0.59
51 5 0.02
ACGTcount: A:0.17, C:0.31, G:0.16, T:0.36
Consensus pattern (49 bp):
TTCGCCGTTACGGCCTCAACCTTTCCCATCACATCTTTTAGGTACTGGG
Found at i:6973653 original size:43 final size:42
Alignment explanation
Indices: 6973496--6973755 Score: 241
Period size: 43 Copynumber: 5.7 Consensus size: 42
6973486 CCGTTACGAT
6973496 CTCAACCTTTCCCATCACATCTTCTTAGGTTTTACCGTTGCGGC
1 CTCAACCTTTCCCATCACATCTTCTTAGG-TTT-CCGTTGCGGC
* * * * * *
6973540 CTCGACCTTTCCCATCACATCTTCTTAAGTACTGGGTTCGCTATTACAGT
1 CTCAACCTTTCCCATCACATCTTC-T---TA--GGTTTC-C-GTTGCGGC
6973590 CTCAACCTTTCCCATCACATCTTCTTAGGTTTCTCGTTGCGGC
1 CTCAACCTTTCCCATCACATCTTCTTAGGTTTC-CGTTGCGGC
* * *
6973633 CTCAACTTTTCCCATTACATCTTCTTAGGTATCGGGTTCACCATTGCGGC
1 CTCAACCTTTCCCATCACATCTTCTTAGG--T----TT--CCGTTGCGGC
* *
6973683 CTCAACCTTTTCCATCACATTTTCTTAGGTTTACCGTTGCGGC
1 CTCAACCTTTCCCATCACATCTTCTTAGGTTT-CCGTTGCGGC
6973726 CTCAACCTTTCCCATCACATCTTCTTAGGT
1 CTCAACCTTTCCCATCACATCTTCTTAGGT
6973756 ACTGGGTTCA
Statistics
Matches: 177, Mismatches: 23, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
43 69 0.39
44 31 0.18
45 2 0.01
46 2 0.01
48 4 0.02
49 6 0.03
50 62 0.35
51 1 0.01
ACGTcount: A:0.17, C:0.32, G:0.13, T:0.37
Consensus pattern (42 bp):
CTCAACCTTTCCCATCACATCTTCTTAGGTTTCCGTTGCGGC
Found at i:6973788 original size:93 final size:93
Alignment explanation
Indices: 6973393--6973785 Score: 495
Period size: 93 Copynumber: 4.1 Consensus size: 93
6973383 TCGTCGTTGT
*
6973393 GGCCTCAACCTTTCCCATCACATCTTCTTAGGTACTGGGTTCACCGTTGCGGCCTCGACCTTTCC
1 GGCCTCAACCTTTCCCATCACATCTTCTTAGG---T---TT-ACCGTTGCGGCCTCAACCTTTCC
* * *
6973458 CATCACATCTTTTTAGGTACTGGGTTCGCCGTTAC
59 CATCACATCTTCTTAGGTACTGGGTTCACCATTAC
** *
6973493 GATCTCAACCTTTCCCATCACATCTTCTTAGGTTTTACCGTTGCGGCCTCGACCTTTCCCATCAC
1 GGCCTCAACCTTTCCCATCACATCTTCTTAGG-TTTACCGTTGCGGCCTCAACCTTTCCCATCAC
* * *
6973558 ATCTTCTTAAGTACTGGGTTCGCTATTAC
65 ATCTTCTTAGGTACTGGGTTCACCATTAC
* * * *
6973587 AGTCTCAACCTTTCCCATCACATCTTCTTAGGTTT-CTCGTTGCGGCCTCAACTTTTCCCATTAC
1 GGCCTCAACCTTTCCCATCACATCTTCTTAGGTTTAC-CGTTGCGGCCTCAACCTTTCCCATCAC
*
6973651 ATCTTCTTAGGTA-TCGGGTTCACCATTGC
65 ATCTTCTTAGGTACT-GGGTTCACCATTAC
* *
6973680 GGCCTCAACCTTTTCCATCACATTTTCTTAGGTTTACCGTTGCGGCCTCAACCTTTCCCATCACA
1 GGCCTCAACCTTTCCCATCACATCTTCTTAGGTTTACCGTTGCGGCCTCAACCTTTCCCATCACA
**
6973745 TCTTCTTAGGTACTGGGTTCACTGTTAC
66 TCTTCTTAGGTACTGGGTTCACCATTAC
6973773 GGCCGT-AACCTTT
1 GGCC-TCAACCTTT
6973786 TCCTGTCAAA
Statistics
Matches: 263, Mismatches: 25, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
92 2 0.01
93 141 0.54
94 87 0.33
95 2 0.01
98 1 0.00
100 30 0.11
ACGTcount: A:0.17, C:0.32, G:0.16, T:0.36
Consensus pattern (93 bp):
GGCCTCAACCTTTCCCATCACATCTTCTTAGGTTTACCGTTGCGGCCTCAACCTTTCCCATCACA
TCTTCTTAGGTACTGGGTTCACCATTAC
Found at i:6974696 original size:6 final size:6
Alignment explanation
Indices: 6974687--6974759 Score: 60
Period size: 6 Copynumber: 11.8 Consensus size: 6
6974677 TGACCTCTTC
**
6974687 TTTTCT TTTTCT CGTT-T -TTTCT ATTTTCT ATTTTCT TTTCTCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT -TTTTCT -TTTTCT TTT-TCT TTTTCT
* *
6974736 TTTTCT TTTTTT TCTTTTT TTTTC
1 TTTTCT TTTTCT T-TTTCT TTTTC
6974760 ATTGAATCCA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
4 2 0.04
5 2 0.04
6 29 0.51
7 24 0.42
ACGTcount: A:0.03, C:0.16, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:6974715 original size:7 final size:6
Alignment explanation
Indices: 6974702--6974759 Score: 62
Period size: 7 Copynumber: 9.0 Consensus size: 6
6974692 TTTTTCTCGT
* *
6974702 TTTTTC TATTTTC TATTTTC TTTTCTC TTTTTC TTTTTC TTTTTT TTCTTTT
1 TTTTTC T-TTTTC T-TTTTC TTTT-TC TTTTTC TTTTTC TTTTTC TT-TTTC
6974754 TTTTTC
1 TTTTTC
6974760 ATTGAATCCA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
6 22 0.47
7 25 0.53
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTC
Found at i:6974727 original size:19 final size:19
Alignment explanation
Indices: 6974703--6974744 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
6974693 TTTTCTCGTT
6974703 TTTTCT-ATTTTCTATTTTC
1 TTTTCTCATTTTCT-TTTTC
*
6974722 TTTTCTCTTTTTCTTTTTC
1 TTTTCTCATTTTCTTTTTC
6974741 TTTT
1 TTTT
6974745 TTTTCTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTCTCATTTTCTTTTTC
Found at i:6980103 original size:59 final size:60
Alignment explanation
Indices: 6980001--6980260 Score: 239
Period size: 59 Copynumber: 4.4 Consensus size: 60
6979991 ATTTTGGACA
* * *
6980001 TTCGAGGGGAAAATGGTAATTTTTGGAAAGTTTGGGGTTAAAAATGGGA-TTTTTTAGAAG
1 TTCGAGGGTAAAATGGTAA-TTTTGGAAAGTTTAGGGTCAAAAATGGGATTTTTTTAGAAG
* * * * * *
6980061 TTCGATGGTAAATTTGTAATTTTGGAAAGTTAAAGGTCAAAAATGGGATTTTTTTTAGAAT
1 TTCGAGGGTAAAATGGTAATTTTGGAAAGTTTAGGGTCAAAAATGGGA-TTTTTTTAGAAG
* * * * *
6980122 TTCGAGGGTAAAATGGTAATTTTGGAAAATTTAGGGTC-AAAATTGTA-ATTTTTGGATA-
1 TTCGAGGGTAAAATGGTAATTTTGGAAAGTTTAGGGTCAAAAATGGGATTTTTTTAGA-AG
* * ** *
6980180 TTTGAGGGTAAAATAGTAATTTTTGG-AAGTTCGGGGGT-AAAAATGGGATTTTTTGA-AAG
1 TTCGAGGGTAAAATGGTAA-TTTTGGAAAGTT-TAGGGTCAAAAATGGGATTTTTTTAGAAG
*
6980239 TTTGAGGGTAAAAT-GTAATTTT
1 TTCGAGGGTAAAATGGTAATTTT
6980261 TAAGAAGTTC
Statistics
Matches: 163, Mismatches: 29, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
57 4 0.02
58 33 0.20
59 58 0.36
60 26 0.16
61 42 0.26
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (60 bp):
TTCGAGGGTAAAATGGTAATTTTGGAAAGTTTAGGGTCAAAAATGGGATTTTTTTAGAAG
Found at i:6980175 original size:30 final size:29
Alignment explanation
Indices: 6979920--6980371 Score: 270
Period size: 29 Copynumber: 15.3 Consensus size: 29
6979910 TGGATGCCCG
* * *
6979920 GGGTAAAATGGTAATTTTTAGAGA-TTCG-
1 GGGTAAAAT-GTAATTTTTGGAAAGTTTGA
* * *
6979948 GGGATAAAATGATAATTTTTGGACA-CTCGA
1 GGG-TAAAATG-TAATTTTTGGAAAGTTTGA
* *
6979978 GGGTAAAAATGTAA-TTTTGGACA-TTCGA
1 GGGT-AAAATGTAATTTTTGGAAAGTTTGA
*
6980006 GGGGAAAATGGTAATTTTTGGAAAGTTTG-
1 GGGTAAAAT-GTAATTTTTGGAAAGTTTGA
** * *
6980035 GGGTTAAAAATGGGATTTTT-TAGAAGTTCGA
1 GGG-T-AAAATGTAATTTTTGGA-AAGTTTGA
* * *
6980066 TGGTAAATTTGTAA-TTTTGGAAAG-TTAA
1 GGGTAAA-ATGTAATTTTTGGAAAGTTTGA
* * * **
6980094 AGGTCAAAAATGGGATTTTTTTTAGAA-TTTCGA
1 GGGT--AAAAT-GTAATTTTTGGA-AAGTTT-GA
*
6980127 GGGTAAAATGGTAA-TTTTGGAAAATTT-A
1 GGGTAAAAT-GTAATTTTTGGAAAGTTTGA
*
6980155 GGGTCAAAATTGTAATTTTTGGATA-TTTGA
1 GGGT-AAAA-TGTAATTTTTGGAAAGTTTGA
* *
6980185 GGGTAAAATAGTAATTTTTGG-AAGTTCGG
1 GGGTAAAAT-GTAATTTTTGGAAAGTTTGA
** *
6980214 GGGTAAAAATGGGATTTTTTGAAAGTTTGA
1 GGGT-AAAATGTAATTTTTGGAAAGTTTGA
* *
6980244 GGGTAAAATGTAATTTTT-AAGAAGTTCGA
1 GGGTAAAATGTAATTTTTGGA-AAGTTTGA
* *
6980273 GGTTAAAATGTAATATTTGGAAAGTTT-A
1 GGGTAAAATGTAATTTTTGGAAAGTTTGA
*
6980301 GGGGTCAAAATGTAATTTTTGGAAATTTTGA
1 -GGGT-AAAATGTAATTTTTGGAAAGTTTGA
*
6980332 GGGTTAAAATGTAATTTTTGGAAAGTTTGG
1 GGG-TAAAATGTAATTTTTGGAAAGTTTGA
6980362 GGGTCAAAAT
1 GGGT-AAAAT
6980372 ATGATTTCTA
Statistics
Matches: 335, Mismatches: 53, Indels: 70
0.73 0.12 0.15
Matches are distributed among these distances:
27 5 0.01
28 38 0.11
29 134 0.40
30 128 0.38
31 22 0.07
32 4 0.01
33 4 0.01
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (29 bp):
GGGTAAAATGTAATTTTTGGAAAGTTTGA
Found at i:6982149 original size:17 final size:17
Alignment explanation
Indices: 6982113--6982174 Score: 88
Period size: 17 Copynumber: 3.5 Consensus size: 17
6982103 CAATATTTCA
6982113 AAATTTAAATTTAAAAAAT
1 AAATTTAAATTT--AAAAT
6982132 AAATTTAAATTTAAAAT
1 AAATTTAAATTTAAAAT
* *
6982149 AATTTTAAACTTAAAAT
1 AAATTTAAATTTAAAAT
6982166 AAATTTAAA
1 AAATTTAAA
6982175 ATAAAAATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
17 28 0.70
19 12 0.30
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATTTAAATTTAAAAT
Found at i:6982181 original size:17 final size:17
Alignment explanation
Indices: 6982126--6982183 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
6982116 TTTAAATTTA
*
6982126 AAAAATAAATTTAAATT
1 AAAAATAAATTTAAAAT
* * *
6982143 TAAAATAATTTTAAACT
1 AAAAATAAATTTAAAAT
*
6982160 TAAAATAAATTTAAAAT
1 AAAAATAAATTTAAAAT
6982177 AAAAATA
1 AAAAATA
6982184 TGTTTAATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAAATAAATTTAAAAT
Found at i:6986516 original size:15 final size:15
Alignment explanation
Indices: 6986488--6986539 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
6986478 GAGACTTCTA
*
6986488 TATTTTTATTTTTATT
1 TATTTTT-TGTTTATT
6986504 TATTTTTTGTTTATT
1 TATTTTTTGTTTATT
**
6986519 TATCTAGTTG-TTATT
1 TAT-TTTTTGTTTATT
6986534 TATTTT
1 TATTTT
6986540 CATGTCAGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
14 1 0.03
15 18 0.60
16 11 0.37
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.75
Consensus pattern (15 bp):
TATTTTTTGTTTATT
Found at i:6986819 original size:21 final size:23
Alignment explanation
Indices: 6986784--6986829 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
6986774 ACATTCTCAT
*
6986784 TTTTATTTAATTTTATTTA-TTG
1 TTTTATGTAATTTTATTTACTTG
6986806 TTTTATGT-ATTTTATTTACTTG
1 TTTTATGTAATTTTATTTACTTG
6986828 TT
1 TT
6986830 ATTTTGACGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.72
Consensus pattern (23 bp):
TTTTATGTAATTTTATTTACTTG
Found at i:6986886 original size:12 final size:11
Alignment explanation
Indices: 6986866--6986895 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
6986856 TTCATTTAAT
6986866 TTTATTTTTTA
1 TTTATTTTTTA
6986877 TTTATATTTTTA
1 TTTAT-TTTTTA
6986889 TTTATTT
1 TTTATTT
6986896 ATATGTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTATTTTTTA
Found at i:6987065 original size:23 final size:22
Alignment explanation
Indices: 6987039--6987083 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
6987029 TCATTATTAC
*
6987039 TACTATTATATTGTGATTTTATT
1 TACTATTAT-TTATGATTTTATT
* *
6987062 TACTCTTATTTATTATTTTATT
1 TACTATTATTTATGATTTTATT
6987084 GTGTTATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.64
Consensus pattern (22 bp):
TACTATTATTTATGATTTTATT
Found at i:6987074 original size:4 final size:4
Alignment explanation
Indices: 6987056--6987154 Score: 58
Period size: 4 Copynumber: 22.8 Consensus size: 4
6987046 ATATTGTGAT
* *
6987056 TTTA TTTA CTCTTA TTTA -TTA TTTTA TTGT- GTTA TTAA TTGTA TTTAA
1 TTTA TTTA -T-TTA TTTA TTTA -TTTA TT-TA TTTA TTTA TT-TA TTT-A
* *
6987104 TTGTA TTCA TTTAA TTTA TTTTA TTCA TGTTA TTTA TTTA TTTA TTTA
1 TT-TA TTTA TTT-A TTTA -TTTA TTTA T-TTA TTTA TTTA TTTA TTTA
6987152 TTT
1 TTT
6987155 TGTCATTATA
Statistics
Matches: 75, Mismatches: 8, Indels: 24
0.70 0.07 0.22
Matches are distributed among these distances:
3 4 0.05
4 41 0.55
5 26 0.35
6 4 0.05
ACGTcount: A:0.24, C:0.04, G:0.05, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:6987100 original size:22 final size:21
Alignment explanation
Indices: 6987074--6987146 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 21
6987064 CTCTTATTTA
6987074 TTATTTTATTGTGTTATTAAT
1 TTATTTTATTGTGTTATTAAT
* *
6987095 TGTATTTAATTGTATTCATTTAAT
1 T-TATTTTATTGTGTT-A-TTAAT
* *
6987119 TTATTTTATTCATGTTATTTAT
1 TTATTTTATT-GTGTTATTAAT
6987141 TTATTT
1 TTATTT
6987147 ATTTATTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
21 1 0.02
22 22 0.52
23 10 0.24
24 9 0.21
ACGTcount: A:0.25, C:0.03, G:0.07, T:0.66
Consensus pattern (21 bp):
TTATTTTATTGTGTTATTAAT
Found at i:6987130 original size:18 final size:17
Alignment explanation
Indices: 6987107--6987151 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
6987097 TATTTAATTG
6987107 TATTCATTTAATTTATTT
1 TATTCATTTAATTTA-TT
6987125 TATTCATGTT-ATTTATT
1 TATTCAT-TTAATTTATT
*
6987142 TATTTATTTA
1 TATTCATTTA
6987152 TTTTGTCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 2 0.08
17 8 0.33
18 12 0.50
19 2 0.08
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTCATTTAATTTATT
Found at i:6999044 original size:21 final size:21
Alignment explanation
Indices: 6999006--6999046 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
6998996 CCTGCAACTT
* **
6999006 CTACCGATATATGTATACTAA
1 CTACCGATACATCAATACTAA
6999027 CTACCGATACATCAATACTA
1 CTACCGATACATCAATACTA
6999047 GAAACTATCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.24, G:0.07, T:0.29
Consensus pattern (21 bp):
CTACCGATACATCAATACTAA
Found at i:6999340 original size:14 final size:14
Alignment explanation
Indices: 6999321--6999353 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
6999311 ATAGTAAGAT
*
6999321 TTCAACATTTTTGG
1 TTCAACATCTTTGG
6999335 TTCAACATCTTTGG
1 TTCAACATCTTTGG
6999349 TTCAA
1 TTCAA
6999354 TATCAAAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.45
Consensus pattern (14 bp):
TTCAACATCTTTGG
Found at i:7001559 original size:27 final size:27
Alignment explanation
Indices: 7001504--7001557 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7001494 GCGACGTTAA
7001504 TGCTACTGGTTTTAATTTTGCTTGTTT
1 TGCTACTGGTTTTAATTTTGCTTGTTT
* **
7001531 TGCTCCTGGTTTTTCTTTTGC-TGTTT
1 TGCTACTGGTTTTAATTTTGCTTGTTT
7001557 T
1 T
7001558 TGTTTTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.06, C:0.15, G:0.19, T:0.61
Consensus pattern (27 bp):
TGCTACTGGTTTTAATTTTGCTTGTTT
Found at i:7018180 original size:6 final size:6
Alignment explanation
Indices: 7018165--7018214 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
7018155 GTATAATTAA
* * *
7018165 AAAAATT AAAAAT -AAAAT -AAAAT ATAACT AAAAAT AAAAAT GAAAAT
1 AAAAA-T AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
7018212 AAA
1 AAA
7018215 TATACTATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
5 10 0.28
6 21 0.58
7 5 0.14
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (6 bp):
AAAAAT
Found at i:7018245 original size:10 final size:10
Alignment explanation
Indices: 7018232--7018276 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
7018222 TTTTTTTAAC
7018232 TTTTCAATTT
1 TTTTCAATTT
7018242 TTTTCAATTT
1 TTTTCAATTT
*
7018252 TTTTAGAATTT
1 TTTT-CAATTT
* *
7018263 TTCTCACTTT
1 TTTTCAATTT
7018273 TTTT
1 TTTT
7018277 TAAAAACATG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
10 21 0.72
11 8 0.28
ACGTcount: A:0.18, C:0.11, G:0.02, T:0.69
Consensus pattern (10 bp):
TTTTCAATTT
Found at i:7018263 original size:21 final size:21
Alignment explanation
Indices: 7018237--7018276 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7018227 TTAACTTTTC
*
7018237 AATTTTTTTCAATTTTTTTAG
1 AATTTTTCTCAATTTTTTTAG
*
7018258 AATTTTTCTCACTTTTTTT
1 AATTTTTCTCAATTTTTTT
7018277 TAAAAACATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.10, G:0.03, T:0.68
Consensus pattern (21 bp):
AATTTTTCTCAATTTTTTTAG
Found at i:7018308 original size:5 final size:6
Alignment explanation
Indices: 7018293--7018317 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7018283 CATGAAAGTA
7018293 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
7018318 CTCGGGTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:7021106 original size:14 final size:13
Alignment explanation
Indices: 7021089--7021146 Score: 50
Period size: 12 Copynumber: 4.4 Consensus size: 13
7021079 ATAAAAGGGA
7021089 AAAAATTAAAATAT
1 AAAAATTAAAAT-T
7021103 AAAAATT-AAATT
1 AAAAATTAAAATT
*
7021115 AAAAATATAAATAGT
1 AAAAAT-TAAA-ATT
7021130 AAAACA--AAAATT
1 AAAA-ATTAAAATT
7021142 AAAAA
1 AAAAA
7021147 ACTGCTAAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
11 1 0.03
12 13 0.34
13 8 0.21
14 9 0.24
15 6 0.16
16 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (13 bp):
AAAAATTAAAATT
Found at i:7021125 original size:27 final size:26
Alignment explanation
Indices: 7021089--7021146 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
7021079 ATAAAAGGGA
*
7021089 AAAAATTAAAATA-TAAAA-ATTAAATT
1 AAAAATT-AAATAGTAAAACA-AAAATT
7021115 AAAAATATAAATAGTAAAACAAAAATT
1 AAAAAT-TAAATAGTAAAACAAAAATT
7021142 AAAAA
1 AAAAA
7021147 ACTGCTAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 11 0.39
27 16 0.57
28 1 0.04
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (26 bp):
AAAAATTAAATAGTAAAACAAAAATT
Found at i:7021126 original size:13 final size:13
Alignment explanation
Indices: 7021089--7021133 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 13
7021079 ATAAAAGGGA
7021089 AAAAATTAAAATAT
1 AAAAATT-AAATAT
7021103 AAAAATTAAAT-T
1 AAAAATTAAATAT
7021115 AAAAATATAAATAGT
1 AAAAAT-TAAATA-T
7021130 AAAA
1 AAAA
7021134 CAAAAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 7 0.25
13 9 0.32
14 7 0.25
15 5 0.18
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (13 bp):
AAAAATTAAATAT
Found at i:7021132 original size:20 final size:19
Alignment explanation
Indices: 7021091--7021132 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
7021081 AAAAGGGAAA
*
7021091 AAATTAAAATATAAAAATT
1 AAATTAAAATATAAAAAGT
*
7021110 AAATTAAAAATATAAATAGT
1 AAATT-AAAATATAAAAAGT
7021130 AAA
1 AAA
7021133 ACAAAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
AAATTAAAATATAAAAAGT
Found at i:7021138 original size:20 final size:20
Alignment explanation
Indices: 7021096--7021146 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
7021086 GGAAAAAATT
* **
7021096 AAAATATAAAAATTAAATTA
1 AAAATATAAAAAGTAAAACA
*
7021116 AAAATATAAATAGTAAAACA
1 AAAATATAAAAAGTAAAACA
7021136 AAAAT-TAAAAA
1 AAAATATAAAAA
7021147 ACTGCTAAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (20 bp):
AAAATATAAAAAGTAAAACA
Found at i:7027049 original size:30 final size:29
Alignment explanation
Indices: 7027015--7027160 Score: 93
Period size: 31 Copynumber: 4.8 Consensus size: 29
7027005 CTCTGGAGAT
7027015 CCCTAAACTGTTT-AAAAATT-ATATTTTGA
1 CCCTAAACT-TTTCAAAAATTCAT-TTTTGA
7027044 CCCCTAAACTTTTCCAAAAATTCCATTTTTGA
1 -CCCTAAACTTTT-CAAAAATT-CATTTTTGA
** *
7027076 CCCTAAAAATTCCAAAAAATTACATTTTT-A
1 CCCTAAACTTTTC-AAAAATT-CATTTTTGA
* * * *
7027106 CCCCTAAAC-TTCCAAAAAATCCATTTATAA
1 -CCCTAAACTTTTC-AAAAATTCATTTTTGA
* *
7027136 CCCTATACTTTCCAAAAATTACATT
1 CCCTAAACTTTTCAAAAATT-CATT
7027161 CTTACCCCTG
Statistics
Matches: 98, Mismatches: 9, Indels: 18
0.78 0.07 0.14
Matches are distributed among these distances:
29 22 0.22
30 31 0.32
31 37 0.38
32 6 0.06
33 2 0.02
ACGTcount: A:0.39, C:0.24, G:0.02, T:0.35
Consensus pattern (29 bp):
CCCTAAACTTTTCAAAAATTCATTTTTGA
Found at i:7027072 original size:31 final size:29
Alignment explanation
Indices: 7027015--7027251 Score: 135
Period size: 30 Copynumber: 7.9 Consensus size: 29
7027005 CTCTGGAGAT
* *
7027015 CCCTAAACTGTT-TAAAAATTATATTTTGAC
1 CCCTAAACT-TTCCAAAAATTACATTTT-AC
*
7027045 CCCTAAACTTTTCCAAAAATTCCATTTTTGA-
1 CCCTAAAC-TTTCCAAAAATTACA-TTTT-AC
**
7027076 CCCTAAAAATTCCAAAAAATTACATTTTTAC
1 CCCTAAACTTTCC-AAAAATTACA-TTTTAC
* * *
7027107 CCCTAAAC-TTCCAAAAAATCCATTTATAA
1 CCCTAAACTTTCCAAAAATTACATTT-TAC
*
7027136 CCCTATACTTTCCAAAAATTACATTCTTAC
1 CCCTAAACTTTCCAAAAATTACATT-TTAC
** * * * *
7027166 CCCTGGA-TGTCCACAAATTTCATTTTTGAT
1 CCCTAAACTTTCCAAAAATTACA-TTTT-AC
* *
7027196 CCCGAAACTTT-CAAAAGTTACCATTTTACC
1 CCCTAAACTTTCCAAAAATTA-CATTTTA-C
* * *
7027226 CCCCAAA-TATCCAAAAATTCCATTTT
1 CCCTAAACTTTCCAAAAATTACATTTT
7027252 TGATCCCGAT
Statistics
Matches: 161, Mismatches: 32, Indels: 29
0.73 0.14 0.13
Matches are distributed among these distances:
28 3 0.02
29 40 0.25
30 70 0.43
31 42 0.26
32 6 0.04
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.35
Consensus pattern (29 bp):
CCCTAAACTTTCCAAAAATTACATTTTAC
Found at i:7027250 original size:60 final size:57
Alignment explanation
Indices: 7027012--7027260 Score: 196
Period size: 60 Copynumber: 4.1 Consensus size: 57
7027002 TTGCTCTGGA
* * *
7027012 GATCCCTAAACTGTTTAAAAATTATATTTTGACCCCTAAACTTTTCCAAAAATTCCATTTTT
1 GATCCCGAAACT-TTCAAAAATTACATTTT-ACCCCTAAA---TTCCAAAAATTCCATTTTT
* * * * *
7027074 GA-CCCTAAAAATTCCAAAAAATTACATTTTTACCCCTAAACTTCCAAAAAATCCATTTAT
1 GATCCC-GAAACTTTC-AAAAATTACA-TTTTACCCCTAAA-TTCCAAAAATTCCATTTTT
* * * ** * *
7027134 -AACCCTATACTTTCCAAAAATTACATTCTTACCCCTGGATGTCCACAAATTTCATTTTT
1 GATCCCGAAACTTT-CAAAAATTACATT-TTACCCCTAAAT-TCCAAAAATTCCATTTTT
* *
7027193 GATCCCGAAACTTTCAAAAGTTACCATTTTACCCCCCAAATATCCAAAAATTCCATTTTT
1 GATCCCGAAACTTTCAAAAATTA-CATTTTA-CCCCTAAAT-TCCAAAAATTCCATTTTT
7027253 GATCCCGA
1 GATCCCGA
7027261 TTTTTTTAAA
Statistics
Matches: 149, Mismatches: 28, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
58 3 0.02
59 49 0.33
60 65 0.44
61 4 0.03
62 24 0.16
63 4 0.03
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.34
Consensus pattern (57 bp):
GATCCCGAAACTTTCAAAAATTACATTTTACCCCTAAATTCCAAAAATTCCATTTTT
Found at i:7029513 original size:19 final size:19
Alignment explanation
Indices: 7029489--7029525 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7029479 ACGCGGTGAT
*
7029489 AGACTTGTTTGATCGATTA
1 AGACTTATTTGATCGATTA
7029508 AGACTTATTTGATCGATT
1 AGACTTATTTGATCGATT
7029526 GAGTAAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.43
Consensus pattern (19 bp):
AGACTTATTTGATCGATTA
Found at i:7034046 original size:18 final size:18
Alignment explanation
Indices: 7034020--7034055 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7034010 AGATGTAAAG
7034020 GAAAAGAAGAAAGAGATA
1 GAAAAGAAGAAAGAGATA
* *
7034038 GAAAGGAAGCAAGAGATA
1 GAAAAGAAGAAAGAGATA
7034056 AGGAAAGCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.31, T:0.06
Consensus pattern (18 bp):
GAAAAGAAGAAAGAGATA
Found at i:7038921 original size:99 final size:100
Alignment explanation
Indices: 7038746--7039041 Score: 373
Period size: 99 Copynumber: 3.0 Consensus size: 100
7038736 AATACAACGG
* *
7038746 GAAAGATCTAAGACCGTAACGGCGGATCCACTACCGCAAAGACACAAAAGGGAAAGGTCTAAGTC
1 GAAAGATCTAAGACCGCAACGGCGGATCCAATACCGCAAAGACACAAAAGGGAAAGGTCTAAGTC
7038811 GCAACGGCGGACCGTGTACCTCAGAAGCATGAAGA
66 GCAACGGCGGACCGTGTACCTCAGAAGCATGAAGA
* * * * *
7038846 GAGAGATCTAAGACCGCAATGACGGATCCAATACTG-AAAGATACAAAAGGGAAAGGTCTAAGTC
1 GAAAGATCTAAGACCGCAACGGCGGATCCAATACCGCAAAGACACAAAAGGGAAAGGTCTAAGTC
*
7038910 GCAACGGCGGACCGTGTACCTCAGAAGCATGAAGG
66 GCAACGGCGGACCGTGTACCTCAGAAGCATGAAGA
* * * * **** *
7038945 GAAAGATCTAAGATCGCAACGGCGGATCCAGTACCACTAAGA-TTTGAAGGGAAAGGTTTAAGTC
1 GAAAGATCTAAGACCGCAACGGCGGATCCAATACCGCAAAGACACAAAAGGGAAAGGTCTAAGTC
** * *
7039009 GCAACGATGAACCCG-GTACCTTAGAAGCATGAA
66 GCAACGGCGGA-CCGTGTACCTCAGAAGCATGAA
7039042 AGGTCGAATC
Statistics
Matches: 169, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
99 132 0.78
100 37 0.22
ACGTcount: A:0.37, C:0.21, G:0.27, T:0.15
Consensus pattern (100 bp):
GAAAGATCTAAGACCGCAACGGCGGATCCAATACCGCAAAGACACAAAAGGGAAAGGTCTAAGTC
GCAACGGCGGACCGTGTACCTCAGAAGCATGAAGA
Found at i:7038945 original size:49 final size:50
Alignment explanation
Indices: 7038793--7039041 Score: 185
Period size: 49 Copynumber: 5.0 Consensus size: 50
7038783 AAAGACACAA
*
7038793 AAGGGAAAGGTCTAAGTCGCAACGGCGGA-CCGTGTACCTCAGAAGCATG
1 AAGGGAAAGGTCTAAGTCGCAACGGCGGATCCGAGTACCTCAGAAGCATG
* * * * * * * * *
7038842 AAGAGAGAGATCTAAGACCGCAATGACGGATCC-AATA-CTGA-AAG-ATACAA
1 AAGGGAAAGGTCTAAG-TCGCAACGGCGGATCCGAGTACCTCAGAAGCAT---G
*
7038892 AAGGGAAAGGTCTAAGTCGCAACGGCGGA-CCGTGTACCTCAGAAGCATG
1 AAGGGAAAGGTCTAAGTCGCAACGGCGGATCCGAGTACCTCAGAAGCATG
* * *
7038941 AAGGGAAAGATCTAAGATCGCAACGGCGGATCC-AGTACCAC-TAAG-ATTTG
1 AAGGGAAAGGTCTAAG-TCGCAACGGCGGATCCGAGTACCTCAGAAGCA--TG
* ** * * *
7038991 AAGGGAAAGGTTTAAGTCGCAACGATGAACCCG-GTACCTTAGAAGCATG
1 AAGGGAAAGGTCTAAGTCGCAACGGCGGATCCGAGTACCTCAGAAGCATG
7039040 AA
1 AA
7039042 AGGTCGAATC
Statistics
Matches: 151, Mismatches: 33, Indels: 32
0.70 0.15 0.15
Matches are distributed among these distances:
47 2 0.01
48 6 0.04
49 67 0.44
50 66 0.44
51 8 0.05
52 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.28, T:0.16
Consensus pattern (50 bp):
AAGGGAAAGGTCTAAGTCGCAACGGCGGATCCGAGTACCTCAGAAGCATG
Found at i:7038979 original size:50 final size:49
Alignment explanation
Indices: 7038744--7038979 Score: 187
Period size: 50 Copynumber: 4.8 Consensus size: 49
7038734 GAAATACAAC
* * * * *
7038744 GGGAAAGATCTAAGACCGTAACGGCGGATCCACTACCGCAAAGACACAAAA
1 GGGAAAGATCTAAGATCGCAACGGCGGATCCAGTACCTCAAAG-CA-TAAA
* * *
7038795 GGGAAAGGTCTAAG-TCGCAACGGCGGA-CCGTGTACCTCAGAAGCATGAA
1 GGGAAAGATCTAAGATCGCAACGGCGGATCC-AGTACCTCA-AAGCATAAA
* * * * * * *
7038844 GAGAGAGATCTAAGACCGCAATGACGGATCCAATA-CTGAAAG-ATACAAAA
1 GGGAAAGATCTAAGATCGCAACGGCGGATCCAGTACCTCAAAGCAT---AAA
* * *
7038894 GGGAAAGGTCTAAG-TCGCAACGGCGGA-CCGTGTACCTCAGAAGCATGAA
1 GGGAAAGATCTAAGATCGCAACGGCGGATCC-AGTACCTCA-AAGCATAAA
7038943 GGGAAAGATCTAAGATCGCAACGGCGGATCCAGTACC
1 GGGAAAGATCTAAGATCGCAACGGCGGATCCAGTACC
7038980 ACTAAGATTT
Statistics
Matches: 142, Mismatches: 30, Indels: 27
0.71 0.15 0.14
Matches are distributed among these distances:
47 2 0.01
48 5 0.04
49 45 0.32
50 65 0.46
51 23 0.16
52 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.28, T:0.13
Consensus pattern (49 bp):
GGGAAAGATCTAAGATCGCAACGGCGGATCCAGTACCTCAAAGCATAAA
Found at i:7038993 original size:50 final size:49
Alignment explanation
Indices: 7038793--7039014 Score: 177
Period size: 50 Copynumber: 4.5 Consensus size: 49
7038783 AAAGACACAA
* *
7038793 AAGGGAAAGGTCTAAGTCGCAACGGCGGACCGTGTACCTCAGAAGCATG
1 AAGGGAAAGGTCTAAGTCGCAACGGCGGACCGAGTACCACAGAAGCATG
* * * * * * * * * *
7038842 AAGAGAGAGATCTAAGACCGCAATGACGGATCC-AATACTGAAAGATA-CA-A
1 AAGGGAAAGGTCTAAG-TCGCAACGGCGGA-CCGAGTAC-CACAGA-AGCATG
* *
7038892 AAGGGAAAGGTCTAAGTCGCAACGGCGGACCGTGTACCTCAGAAGCATG
1 AAGGGAAAGGTCTAAGTCGCAACGGCGGACCGAGTACCACAGAAGCATG
* *
7038941 AAGGGAAAGATCTAAGATCGCAACGGCGGATCC-AGTACCAC-TAAG-ATTTG
1 AAGGGAAAGGTCTAAG-TCGCAACGGCGGA-CCGAGTACCACAGAAGCA--TG
*
7038991 AAGGGAAAGGTTTAAGTCGCAACG
1 AAGGGAAAGGTCTAAGTCGCAACG
7039015 ATGAACCCGG
Statistics
Matches: 132, Mismatches: 30, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
47 1 0.01
48 8 0.06
49 52 0.39
50 61 0.46
51 9 0.07
52 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.29, T:0.15
Consensus pattern (49 bp):
AAGGGAAAGGTCTAAGTCGCAACGGCGGACCGAGTACCACAGAAGCATG
Found at i:7039260 original size:92 final size:92
Alignment explanation
Indices: 7039103--7039599 Score: 819
Period size: 92 Copynumber: 5.5 Consensus size: 92
7039093 ATCAAAATAG
* *
7039103 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGTAAGATGAAGCTTCAAATATCAATTCTTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTTATCC
7039168 TCTTGAAGTTGCAGTAAAGTTGGATAA
66 TCTTGAAGTTGCAGTAAAGTTGGATAA
* *
7039195 CAAGTCTTTACCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTTATCC
*
7039260 TCTTGAAGTTGCAGTAAAGTTGGATAG
66 TCTTGAAGTTGCAGTAAAGTTGGATAA
7039287 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTTATCC
7039352 TCTTGAAGTTGCAGTAAAGTTGGATAA
66 TCTTGAAGTTGCAGTAAAGTTGGATAA
* *
7039379 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTCCAAACATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTTATCC
* *
7039444 TCTTGAAGTTGCAGTAAAGTTGCATAG
66 TCTTGAAGTTGCAGTAAAGTTGGATAA
* * * *
7039471 CAAGTCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATCAAGC-T------TCAATTCTTGTCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTTATCC
7039529 TCTTGAAGTTGCAGTAAAGTTGGATAA
66 TCTTGAAGTTGCAGTAAAGTTGGATAA
*
7039556 CAAGTCTTTATCTCTTTGAAGTTGTAGTAAGAGCAAGATGAAGC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGC
7039600 CTCGACATCA
Statistics
Matches: 381, Mismatches: 24, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
85 76 0.20
92 305 0.80
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (92 bp):
CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTCAAACATCAATTCTTATCC
TCTTGAAGTTGCAGTAAAGTTGGATAA
Found at i:7039571 original size:39 final size:39
Alignment explanation
Indices: 7039443--7039585 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 39
7039433 AATTCCTATC
* *
7039443 CTCTTGAAGTTGCAGTAAAGTTGCATAGCAAGTCTTTAT
1 CTCTTGAAGTTGCAGTAAAGTTGGATAACAAGTCTTTAT
** ** * *
7039482 CTCTCTGAAGTTATAGTAAGAGTAAGATCAAGCTTCAATTCTTGT-C
1 CTCT-TGAAGTTGCAGTAA-AGTTGGAT-AA----CAAGTCTT-TAT
7039528 CTCTTGAAGTTGCAGTAAAGTTGGATAACAAGTCTTTAT
1 CTCTTGAAGTTGCAGTAAAGTTGGATAACAAGTCTTTAT
*
7039567 CTCTTTGAAGTTGTAGTAA
1 CTC-TTGAAGTTGCAGTAA
7039586 GAGCAAGATG
Statistics
Matches: 79, Mismatches: 15, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
38 1 0.01
39 14 0.18
40 26 0.33
41 5 0.06
42 1 0.01
43 2 0.03
44 6 0.08
45 12 0.15
46 11 0.14
47 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (39 bp):
CTCTTGAAGTTGCAGTAAAGTTGGATAACAAGTCTTTAT
Found at i:7041828 original size:29 final size:28
Alignment explanation
Indices: 7041753--7042026 Score: 226
Period size: 29 Copynumber: 9.4 Consensus size: 28
7041743 CTCTGGAGAT
* * *
7041753 CCCTAAACTATCCAAAAACTATATTTTGA
1 CCCTAAACT-TCCAAAAATTACATTTTTA
** *
7041782 CCCCTAAACTTCTTTAAAATTGCATTTTTA
1 -CCCTAAACTTC-CAAAAATTACATTTTTA
* *
7041812 CCCTAAAACTTCCTAAAATTACTTTTTTA
1 CCCT-AAACTTCCAAAAATTACATTTTTA
* *
7041841 CCCTAAACTTTCAAAAATTACATTTTAA
1 CCCTAAACTTCCAAAAATTACATTTTTA
* * ** *
7041869 CCTTTGAACTTCCAAAAATCCCATTTTAA
1 CC-CTAAACTTCCAAAAATTACATTTTTA
7041898 CCCTAAAACTTCCAAAAATTACATTTTTA
1 CCCT-AAACTTCCAAAAATTACATTTTTA
* *
7041927 CCCCTAAACTTCTAAAAATTCCATTTTTAA
1 -CCCTAAACTTCCAAAAATTACATTTTT-A
* *
7041957 CCTTAAACTTTCCAAAAATTACATTCTTA
1 CCCTAAAC-TTCCAAAAATTACATTTTTA
* * *
7041986 CCCCTAGA-TGTCCATAAATTCCATTTTTGA
1 -CCCTAAACT-TCCAAAAATTACATTTTT-A
7042016 TCCCTAAACTT
1 -CCCTAAACTT
7042027 TTAAAGGTTA
Statistics
Matches: 197, Mismatches: 36, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
28 24 0.12
29 111 0.56
30 61 0.31
31 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.37
Consensus pattern (28 bp):
CCCTAAACTTCCAAAAATTACATTTTTA
Found at i:7041902 original size:86 final size:88
Alignment explanation
Indices: 7041804--7041975 Score: 253
Period size: 86 Copynumber: 2.0 Consensus size: 88
7041794 TTTAAAATTG
* * *
7041804 CATTTTTACCCTAAAACTTCCTAAAATTACTTTTTTA-CCCTAAACTT-TCAAAAATTACA-TTT
1 CATTTTAACCCTAAAACTTCCAAAAATTACATTTTTACCCCTAAACTTCT-AAAAATTACATTTT
*
7041866 TAACCTTTGAAC-TTCCAAAAATCC
65 TAACC-TTAAACTTTCCAAAAATCC
*
7041890 CATTTTAACCCTAAAACTTCCAAAAATTACATTTTTACCCCTAAACTTCTAAAAATTCCATTTTT
1 CATTTTAACCCTAAAACTTCCAAAAATTACATTTTTACCCCTAAACTTCTAAAAATTACATTTTT
7041955 AACCTTAAACTTTCCAAAAAT
66 AACCTTAAACTTTCCAAAAAT
7041976 TACATTCTTA
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
86 34 0.44
87 24 0.31
88 19 0.25
ACGTcount: A:0.38, C:0.24, G:0.01, T:0.37
Consensus pattern (88 bp):
CATTTTAACCCTAAAACTTCCAAAAATTACATTTTTACCCCTAAACTTCTAAAAATTACATTTTT
AACCTTAAACTTTCCAAAAATCC
Found at i:7041971 original size:59 final size:59
Alignment explanation
Indices: 7041753--7042027 Score: 249
Period size: 59 Copynumber: 4.7 Consensus size: 59
7041743 CTCTGGAGAT
* ** * * ** *
7041753 CCCTAAACTATCCAAAAACTATATTTTGACCCCTAAAC-TTCTTTAAAATTGCATTTTTA-
1 CCCTAAACT-TCCAAAAATTCCATTTTTAACCCTAAACTTTC-CAAAAATTACATTTTTAC
* * * *
7041812 CCCTAAAACTTCCTAAAATTAC-TTTTTTACCCTAAACTTT-CAAAAATTACATTTTAAC
1 CCCT-AAACTTCCAAAAATTCCATTTTTAACCCTAAACTTTCCAAAAATTACATTTTTAC
** * *
7041870 CTTTGAACTTCCAAAAATCCCA-TTTTAACCCTAAAAC-TTCCAAAAATTACATTTTTAC
1 CCCTAAACTTCCAAAAATTCCATTTTTAACCCT-AAACTTTCCAAAAATTACATTTTTAC
* * *
7041928 CCCTAAACTTCTAAAAATTCCATTTTTAACCTTAAACTTTCCAAAAATTACATTCTTAC
1 CCCTAAACTTCCAAAAATTCCATTTTTAACCCTAAACTTTCCAAAAATTACATTTTTAC
* * *
7041987 CCCTAGA-TGTCCATAAATTCCATTTTTGATCCCTAAACTTT
1 CCCTAAACT-TCCAAAAATTCCATTTTT-AACCCTAAACTTT
7042028 TAAAGGTTAC
Statistics
Matches: 176, Mismatches: 30, Indels: 19
0.78 0.13 0.08
Matches are distributed among these distances:
57 37 0.21
58 57 0.32
59 66 0.38
60 16 0.09
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.37
Consensus pattern (59 bp):
CCCTAAACTTCCAAAAATTCCATTTTTAACCCTAAACTTTCCAAAAATTACATTTTTAC
Found at i:7042046 original size:59 final size:61
Alignment explanation
Indices: 7041841--7042077 Score: 185
Period size: 59 Copynumber: 4.0 Consensus size: 61
7041831 TACTTTTTTA
* ** * *
7041841 CCCTAAACTTT-CAAAAATTACATT-TTA-ACCTTTGA-ACTTCCAAAAATCCCA-TTTT-AA
1 CCCTAAACTTTCCAAAAATTACATTCTTACCCCTCAGATA--TCCAAAAATTCCATTTTTGAT
* * * *
7041898 CCCTAAAAC-TTCCAAAAATTACATTTTTACCCCT-AAACT-TCTAAAAATTCCATTTTT-AA
1 CCCT-AAACTTTCCAAAAATTACATTCTTACCCCTCAGA-TATCCAAAAATTCCATTTTTGAT
* * *
7041957 CCTTAAACTTTCCAAAAATTACATTCTTACCCCT-AGATGTCCATAAATTCCATTTTTGAT
1 CCCTAAACTTTCCAAAAATTACATTCTTACCCCTCAGATATCCAAAAATTCCATTTTTGAT
* ** * *
7042017 CCCTAAACTTT-TAAAGGTTACCATT-TTACCCCTCAGATATCCAAAAATTTCGTTTTTGAT
1 CCCTAAACTTTCCAAAAATTA-CATTCTTACCCCTCAGATATCCAAAAATTCCATTTTTGAT
7042077 C
1 C
7042078 TCGAGTTTTT
Statistics
Matches: 149, Mismatches: 19, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
57 6 0.04
58 33 0.22
59 69 0.46
60 41 0.28
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.37
Consensus pattern (61 bp):
CCCTAAACTTTCCAAAAATTACATTCTTACCCCTCAGATATCCAAAAATTCCATTTTTGAT
Found at i:7043767 original size:58 final size:60
Alignment explanation
Indices: 7043697--7043862 Score: 248
Period size: 60 Copynumber: 2.8 Consensus size: 60
7043687 ATAACACTTG
*
7043697 GTACTTGAACTTGACATTTTTTCCTAATTTGGTACTTAAAC-TTTTTT-GA-CACAATTTT
1 GTACTTGAACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTGGATC-CAATTTT
*
7043755 GTACTTGAACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTTGGATCCAATTTT
1 GTACTTGAACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTGGATCCAATTTT
* * **
7043815 GTACCTAAACTTGACATTTTTTCCTAATTTGGTACCTAAGTTTTTTTT
1 GTACTTGAACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTT
7043863 TAGATTCAAT
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
58 39 0.40
59 6 0.06
60 52 0.53
61 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.11, T:0.48
Consensus pattern (60 bp):
GTACTTGAACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTGGATCCAATTTT
Found at i:7043836 original size:60 final size:59
Alignment explanation
Indices: 7043704--7043884 Score: 240
Period size: 60 Copynumber: 3.0 Consensus size: 59
7043694 TTGGTACTTG
* * *
7043704 AACTTGACATTTTTTCCTAATTTGGTACTTAAAC-TTTTTTGA-CACAATTTTGTACTTG
1 AACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTGATC-CAATTTTGTACCTA
*
7043762 AACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTTGGATCCAATTTTGTACCTA
1 AACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTT-GATCCAATTTTGTACCTA
** * *
7043822 AACTTGACATTTTTTCCTAATTTGGTACCTAAGTTTTTTTTTAGATTCAATTTGGTACCTA
1 AACTTGACATTTTTTCCTAATTTGGTACCTAA-ACTTTTTTT-GATCCAATTTTGTACCTA
7043883 AA
1 AA
7043885 ATTATTAAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
58 32 0.29
59 6 0.06
60 45 0.41
61 26 0.24
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (59 bp):
AACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTGATCCAATTTTGTACCTA
Found at i:7044164 original size:31 final size:28
Alignment explanation
Indices: 7044089--7044164 Score: 71
Period size: 31 Copynumber: 2.5 Consensus size: 28
7044079 ACCCCAAAAT
*
7044089 GTTTAAGTACCAACTTAAAAAAGAGTCAA
1 GTTT-AGTACCAAATTAAAAAAGAGTCAA
* * *
7044118 CTTTAGGTACAAAATTAGGAAAAAGTGTCAA
1 GTTTA-GTACCAAATTA--AAAAAGAGTCAA
7044149 GTTTGAGTACCAAATT
1 GTTT-AGTACCAAATT
7044165 GGACCAAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
28 1 0.03
29 12 0.32
31 23 0.62
32 1 0.03
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (28 bp):
GTTTAGTACCAAATTAAAAAAGAGTCAA
Done.