Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 41 of 132
Found at i:11085396 original size:18 final size:17
Alignment explanation
Indices: 11085354--11085396 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
11085344 AACTAGGGTT
*
11085354 AGAAGAAGAGGAATAAG
1 AGAAGAAGAAGAATAAG
11085371 -G-AGAAGAAGAATAAG
1 AGAAGAAGAAGAATAAG
11085386 AGAAGATAGAA
1 AGAAGA-AGAA
11085397 AGGACAATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 13 0.59
16 2 0.09
17 3 0.14
18 4 0.18
ACGTcount: A:0.60, C:0.00, G:0.33, T:0.07
Consensus pattern (17 bp):
AGAAGAAGAAGAATAAG
Found at i:11087642 original size:5 final size:5
Alignment explanation
Indices: 11087627--11087669 Score: 63
Period size: 5 Copynumber: 8.8 Consensus size: 5
11087617 TCAAAATTTT
11087627 GAAGTA GAAGA G-A-A GAAGA GAAGA GAAGA GAAGA GAAGA GAAG
1 GAAG-A GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAG
11087670 GAAAGGTGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 27 0.77
6 4 0.11
ACGTcount: A:0.58, C:0.00, G:0.40, T:0.02
Consensus pattern (5 bp):
GAAGA
Found at i:11096971 original size:2 final size:2
Alignment explanation
Indices: 11096964--11097008 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
11096954 CTAGCTGAAA
11096964 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
11097006 AG A
1 AG A
11097009 AAGGGTTGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:11103633 original size:58 final size:59
Alignment explanation
Indices: 11103507--11103786 Score: 225
Period size: 58 Copynumber: 4.8 Consensus size: 59
11103497 AATCGAGGGG
* * * *
11103507 AAAATAAAATTTT-GAAAATTT-GAGGGT-AAAATGGTAATTTTAGA-AAGTTT-GAGATC
1 AAAATATAATTTTAGAAAATTTAG-GGGTCAAAAT-GTAATTTTAGAGAATTTTAGGGGTC
* * * * * *
11103563 AAAAATAGAATTTTGGAAAATTTAGGGGTGAAAATGTGATTTTAGA-AATTTTTGGGGTT
1 -AAAATATAATTTTAGAAAATTTAGGGGTCAAAATGTAATTTTAGAGAATTTTAGGGGTC
* * * * * *
11103622 AAAATATAATTTTGGAGAAGTTTGGGGGTC--AATATAATTTTGGAGAAGTTTAGGGGTC
1 AAAATATAATTTTAGA-AAATTTAGGGGTCAAAATGTAATTTTAGAGAATTTTAGGGGTC
* * * * * * *
11103680 AAAACATAATTTTTAGAAAGTTTATGGGTCAAAATATAATTTTGGAGAATTATAAGGGTC
1 AAAATATAA-TTTTAGAAAATTTAGGGGTCAAAATGTAATTTTAGAGAATTTTAGGGGTC
*
11103740 AAAATGTAATTTTTAGAAAATTTAGGGGTCAAAATGTAATTTCTAGA
1 AAAATATAA-TTTTAGAAAATTTAGGGGTCAAAATGTAATTT-TAGA
11103787 CAGTTTAGAA
Statistics
Matches: 184, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
57 23 0.12
58 71 0.39
59 25 0.14
60 62 0.34
61 3 0.02
ACGTcount: A:0.40, C:0.03, G:0.22, T:0.35
Consensus pattern (59 bp):
AAAATATAATTTTAGAAAATTTAGGGGTCAAAATGTAATTTTAGAGAATTTTAGGGGTC
Found at i:11103794 original size:30 final size:29
Alignment explanation
Indices: 11103507--11103794 Score: 212
Period size: 30 Copynumber: 9.8 Consensus size: 29
11103497 AATCGAGGGG
* *
11103507 AAAATAAAATTTT-GAAAATTT-GAGGGT-
1 AAAATATAATTTTAGAAAGTTTAG-GGGTC
* * *
11103534 AAAATGGTAATTTTAGAAAGTTT-GAGATC
1 AAAAT-ATAATTTTAGAAAGTTTAGGGGTC
* * * *
11103563 AAAAATAGAATTTTGGAAAATTTAGGGGTG
1 -AAAATATAATTTTAGAAAGTTTAGGGGTC
* * * * *
11103593 AAAATGTGATTTTAGAAATTTTTGGGGTT
1 AAAATATAATTTTAGAAAGTTTAGGGGTC
* *
11103622 AAAATATAATTTTGGAGAAGTTTGGGGGTC
1 AAAATATAATTTTAGA-AAGTTTAGGGGTC
*
11103652 --AATATAATTTTGGAGAAGTTTAGGGGTC
1 AAAATATAATTTTAGA-AAGTTTAGGGGTC
* *
11103680 AAAACATAATTTTTAGAAAGTTTATGGGTC
1 AAAATATAA-TTTTAGAAAGTTTAGGGGTC
* *
11103710 AAAATATAATTTTGGAGAA-TTATAAGGGTC
1 AAAATATAATTTTAGA-AAGTT-TAGGGGTC
* *
11103740 AAAATGTAATTTTTAGAAAATTTAGGGGTC
1 AAAATATAA-TTTTAGAAAGTTTAGGGGTC
* *
11103770 AAAATGTAATTTCTAGACAGTTTAG
1 AAAATATAATTT-TAGAAAGTTTAG
11103795 AAACTTCCAG
Statistics
Matches: 210, Mismatches: 37, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
27 5 0.02
28 35 0.17
29 67 0.32
30 89 0.42
31 14 0.07
ACGTcount: A:0.39, C:0.03, G:0.22, T:0.35
Consensus pattern (29 bp):
AAAATATAATTTTAGAAAGTTTAGGGGTC
Found at i:11104921 original size:21 final size:20
Alignment explanation
Indices: 11104895--11104939 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
11104885 TCACTAATAT
* *
11104895 TATTATTAATAATATTTATTA
1 TATTATAAACAATA-TTATTA
11104916 TATTATAAACAATATTATTA
1 TATTATAAACAATATTATTA
11104936 -ATTA
1 TATTA
11104940 CTATTAATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 6 0.27
21 12 0.55
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TATTATAAACAATATTATTA
Found at i:11105634 original size:23 final size:23
Alignment explanation
Indices: 11105606--11105650 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
11105596 GGACATTTTA
* *
11105606 TTAAATTTATAATAATTTTAAAT
1 TTAAATTTAAAATAAATTTAAAT
11105629 TTAAATTTAAAATAAATTTAAA
1 TTAAATTTAAAATAAATTTAAA
11105651 ATGGTTTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TTAAATTTAAAATAAATTTAAAT
Found at i:11105644 original size:11 final size:11
Alignment explanation
Indices: 11105607--11105652 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
11105597 GACATTTTAT
*
11105607 TAAATTTATAA
1 TAAATTTAAAA
* *
11105618 TAATTTTAAATT
1 TAAATTTAAA-A
11105630 TAAATTTAAAA
1 TAAATTTAAAA
11105641 TAAATTTAAAA
1 TAAATTTAAAA
11105652 T
1 T
11105653 GGTTTGGTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
11 20 0.69
12 9 0.31
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TAAATTTAAAA
Found at i:11106066 original size:92 final size:92
Alignment explanation
Indices: 11105904--11106407 Score: 900
Period size: 92 Copynumber: 5.5 Consensus size: 92
11105894 TGATGTCGAG
* * * *
11105904 GCTTTATCTTGCTCTTACTACAACTTCAGAGAGATAAACGTTTGTTATCTAACTTTACTATATCT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACT
11105969 TCAAGAGGATAAGAATTGACGTTTGAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
* *
11105996 GTTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACT
*
11106061 TCAAGAGGATAAGAATTGACGTTTAAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
*
11106088 GCTTCATCTTGCTCTTACTACAACTTCAAAGAGATAAAGGTTTGTTATCCAACTTTACTATAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACT
*
11106153 TCAAGAGGATAAGAATTGACATTTGAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
*
11106180 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAATT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACT
11106245 TCAAGAGGATAAGAATTGACGTTTGAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
11106272 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACT
*
11106337 TCAAGAGGATAAGAATTGACTTTTGAA
66 TCAAGAGGATAAGAATTGACGTTTGAA
*
11106364 GCTTCATCCTGCTCTTACTACAACTTCAGAGAGATAAAGGTTTG
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGGTTTG
11106408 CTATTTTTGA
Statistics
Matches: 394, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 394 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (92 bp):
GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACT
TCAAGAGGATAAGAATTGACGTTTGAA
Found at i:11116479 original size:21 final size:21
Alignment explanation
Indices: 11116452--11116522 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
11116442 ACTTTGCCAA
11116452 AACCAGAACTAGTTTTACCAG
1 AACCAGAACTAGTTTTACCAG
* * ** *
11116473 AATCAGAACCAACTTTACTAG
1 AACCAGAACTAGTTTTACCAG
*
11116494 AACCAGAACTAGTTTCACCAG
1 AACCAGAACTAGTTTTACCAG
*
11116515 AACTAGAA
1 AACCAGAA
11116523 GTGGTGAATG
Statistics
Matches: 38, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.42, C:0.24, G:0.13, T:0.21
Consensus pattern (21 bp):
AACCAGAACTAGTTTTACCAG
Found at i:11122728 original size:22 final size:20
Alignment explanation
Indices: 11122681--11122759 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 20
11122671 ATTATATTTT
*
11122681 TATTTTGGTGTTGTTTTTGC
1 TATTTTGGTGTTGTTTTTAC
11122701 TATTTTGGTGTTGCTTTTTTAC
1 TATTTTGGTGTTG--TTTTTAC
* *
11122723 TGTTTTAGTGTT-TTTTTAC
1 TATTTTGGTGTTGTTTTTAC
*
11122742 TATTTTGATTGTTGTTTT
1 TATTTTG-GTGTTGTTTT
11122760 AGTGTTTTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
19 12 0.24
20 17 0.35
21 4 0.08
22 16 0.33
ACGTcount: A:0.09, C:0.05, G:0.19, T:0.67
Consensus pattern (20 bp):
TATTTTGGTGTTGTTTTTAC
Found at i:11122758 original size:31 final size:30
Alignment explanation
Indices: 11122723--11122789 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 30
11122713 GCTTTTTTAC
11122723 TGTTTTAGTGTTTTTTTACTATTTTGATTGT
1 TGTTTTAGTGTTTTTTTACTATTTTGA-TGT
*
11122754 TGTTTTAGTGTTTTTTTACTGTTTTGATGT
1 TGTTTTAGTGTTTTTTTACTATTTTGATGT
*
11122784 TATTTT
1 TGTTTT
11122790 TGTTGCTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 8 0.24
31 26 0.76
ACGTcount: A:0.12, C:0.03, G:0.16, T:0.69
Consensus pattern (30 bp):
TGTTTTAGTGTTTTTTTACTATTTTGATGT
Found at i:11122767 original size:20 final size:19
Alignment explanation
Indices: 11122717--11122767 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
11122707 GGTGTTGCTT
*
11122717 TTTTACTGTTTTAGTGTTT
1 TTTTACTGTTTTAGTGTTG
* *
11122736 TTTTACTATTTTGATTGTTG
1 TTTTACTGTTTT-AGTGTTG
*
11122756 TTTTAGTGTTTT
1 TTTTACTGTTTT
11122768 TTTACTGTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.12, C:0.04, G:0.16, T:0.69
Consensus pattern (19 bp):
TTTTACTGTTTTAGTGTTG
Found at i:11122812 original size:35 final size:35
Alignment explanation
Indices: 11122770--11122860 Score: 112
Period size: 35 Copynumber: 2.6 Consensus size: 35
11122760 AGTGTTTTTT
* *
11122770 TACTGTTTTGATGTTATTTTTGTTGCTATTTTTGC
1 TACTGTTTTGTTGTTATTTTTGCTGCTATTTTTGC
* * *
11122805 TGCTGTTTTTGTTGTT-GTTTTGCTGTTATTTTTGC
1 TACTG-TTTTGTTGTTATTTTTGCTGCTATTTTTGC
11122840 TACTGTTTTGGTTGTTATTTT
1 TACTGTTTT-GTTGTTATTTT
11122861 GGTTATTTGG
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
34 4 0.09
35 30 0.65
36 12 0.26
ACGTcount: A:0.08, C:0.08, G:0.20, T:0.65
Consensus pattern (35 bp):
TACTGTTTTGTTGTTATTTTTGCTGCTATTTTTGC
Found at i:11122823 original size:12 final size:12
Alignment explanation
Indices: 11122775--11122840 Score: 62
Period size: 12 Copynumber: 5.6 Consensus size: 12
11122765 TTTTTTACTG
*
11122775 TTTTGATGTTAT
1 TTTTGCTGTTAT
* *
11122787 TTTTGTTGCTAT
1 TTTTGCTGTTAT
* *
11122799 TTTTGCTGCTGT
1 TTTTGCTGTTAT
* *
11122811 TTTTGTTGTT-G
1 TTTTGCTGTTAT
11122822 TTTTGCTGTTAT
1 TTTTGCTGTTAT
11122834 TTTTGCT
1 TTTTGCT
11122841 ACTGTTTTGG
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
11 9 0.20
12 35 0.80
ACGTcount: A:0.06, C:0.08, G:0.20, T:0.67
Consensus pattern (12 bp):
TTTTGCTGTTAT
Found at i:11123024 original size:26 final size:26
Alignment explanation
Indices: 11122996--11123046 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11122986 ATATAAAGAA
11122996 TTTTTAATGTATTTTAAATTTATTTAT
1 TTTTTAAT-TATTTTAAATTTATTTAT
* *
11123023 TTTTTAATTTTTTTAAGTTTATTT
1 TTTTTAATTATTTTAAATTTATTT
11123047 GATATATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (26 bp):
TTTTTAATTATTTTAAATTTATTTAT
Found at i:11123080 original size:29 final size:26
Alignment explanation
Indices: 11123007--11123081 Score: 78
Period size: 29 Copynumber: 2.7 Consensus size: 26
11122997 TTTTAATGTA
* *
11123007 TTTTAAATTTATTTATTTTTTAATTT
1 TTTTAAATTTATTTATATATTAATTT
*
11123033 TTTTAAGTTTATTTGATATATTATATATT
1 TTTTAAATTTATTT-ATATATTA-AT-TT
*
11123062 TTTTAAATTTGTTGTATATA
1 TTTTAAATTTATT-TATATA
11123082 ATAAAATAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 13 0.32
27 6 0.15
28 2 0.05
29 18 0.45
30 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.65
Consensus pattern (26 bp):
TTTTAAATTTATTTATATATTAATTT
Found at i:11123886 original size:26 final size:24
Alignment explanation
Indices: 11123842--11123901 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
11123832 AATTTATCTT
* *
11123842 TTAATTTTTTATTTATTTAATTTA
1 TTAATTTTTAATTTATTTAAATTA
11123866 TTAACTTTTTAATTTATTTTAAATTA
1 TTAA-TTTTTAATTTA-TTTAAATTA
11123892 TTAATATTTT
1 TTAAT-TTTT
11123902 TACTAATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 4 0.13
25 11 0.35
26 16 0.52
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (24 bp):
TTAATTTTTAATTTATTTAAATTA
Found at i:11129517 original size:9 final size:10
Alignment explanation
Indices: 11129501--11129527 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
11129491 TGGTGATAAA
11129501 TAAAAAAAAC
1 TAAAAAAAAC
11129511 TAAAAAAAAC
1 TAAAAAAAAC
11129521 TAAAAAA
1 TAAAAAA
11129528 TAAAAACTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.81, C:0.07, G:0.00, T:0.11
Consensus pattern (10 bp):
TAAAAAAAAC
Found at i:11130402 original size:152 final size:152
Alignment explanation
Indices: 11130143--11130458 Score: 587
Period size: 152 Copynumber: 2.1 Consensus size: 152
11130133 GAGTCCTGCA
11130143 TTATTTCATGTAATTATTCCTGAGATAGACCTTTTTGTATGAATGTTGAAAGATGCATCGAAGTT
1 TTATTTCATGTAATTATTCCTGAGATAGACCTTTTTGTATGAATGTTGAAAGATGCATCGAAGTT
* *
11130208 CACTTAAATGATATCCTCTTCTGGTGATTCCCATACAACTCGTTCTTTGGCACGCGTAGATGTGG
66 CACTTAAATGATATCCTCCTCTGGTGATTCCCATACAACTCGTTCTTTGGCACACGTAGATGTGG
11130273 ACGAACCATTGAGTTGCTCAAT
131 ACGAACCATTGAGTTGCTCAAT
11130295 TTATTTCATGTAATTATTCCTGAGATAGACCTTTTTGTATGAATGTTGAAAGATGCATCGAAGTT
1 TTATTTCATGTAATTATTCCTGAGATAGACCTTTTTGTATGAATGTTGAAAGATGCATCGAAGTT
11130360 CACTTAAATGATATCCTCCTCTGGTGATTCCCATACAACTCGTTCTTTGGCACACGTAGATGTGG
66 CACTTAAATGATATCCTCCTCTGGTGATTCCCATACAACTCGTTCTTTGGCACACGTAGATGTGG
*
11130425 GCGAACCATTGAGTTGCTCAAT
131 ACGAACCATTGAGTTGCTCAAT
* *
11130447 TTCTTTTATGTA
1 TTATTTCATGTA
11130459 TGTATTAATA
Statistics
Matches: 159, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
152 159 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (152 bp):
TTATTTCATGTAATTATTCCTGAGATAGACCTTTTTGTATGAATGTTGAAAGATGCATCGAAGTT
CACTTAAATGATATCCTCCTCTGGTGATTCCCATACAACTCGTTCTTTGGCACACGTAGATGTGG
ACGAACCATTGAGTTGCTCAAT
Found at i:11136968 original size:69 final size:69
Alignment explanation
Indices: 11136836--11136975 Score: 181
Period size: 69 Copynumber: 2.0 Consensus size: 69
11136826 AATAATAACA
* * *
11136836 ATAAAATTAATTATTATAATAATATTACAACATAAAATAAAAAATATATCATATTATATCATATT
1 ATAAAATTAATTATTATAATAATATTACAACATAAAATAAAAAAAATATCATATTACACCATATT
11136901 ATCG
66 ATCG
* * ** * ** *
11136905 ATAAAATTAATTATTATGATAATATTATAATGTGAAATAAAAAAAATATTGTGTTACACCATATT
1 ATAAAATTAATTATTATAATAATATTACAACATAAAATAAAAAAAATATCATATTACACCATATT
11136970 ATCG
66 ATCG
11136974 AT
1 AT
11136976 TTTACAAACT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.51, C:0.06, G:0.05, T:0.38
Consensus pattern (69 bp):
ATAAAATTAATTATTATAATAATATTACAACATAAAATAAAAAAAATATCATATTACACCATATT
ATCG
Found at i:11138247 original size:4 final size:4
Alignment explanation
Indices: 11138238--11138289 Score: 86
Period size: 4 Copynumber: 12.5 Consensus size: 4
11138228 AAATAAACGG
11138238 GAAA GAAA GAAA GAAAA GAAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA G-AAA G-AAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
11138288 GA
1 GA
11138290 TAATATGTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 38 0.81
5 9 0.19
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:11138363 original size:20 final size:20
Alignment explanation
Indices: 11138340--11138383 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
11138330 TTTAAAATCG
* *
11138340 TATTTTATTTATTAA-AATTT
1 TATTTAATTT-TTAACAAATT
11138360 TATTTAATTTTTAACAAATT
1 TATTTAATTTTTAACAAATT
11138380 TATT
1 TATT
11138384 GAAGATGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTTAATTTTTAACAAATT
Found at i:11141322 original size:28 final size:28
Alignment explanation
Indices: 11141259--11141339 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 28
11141249 TTTAAAAATG
* * *
11141259 TTTCATGTATAGGATTTATGGTTTAAGG
1 TTTCAAGTATAGGGTTTATGGTTTAAGA
* * *
11141287 TTTGAAGTTTAGGGTTTATGGTTTATGA
1 TTTCAAGTATAGGGTTTATGGTTTAAGA
* * *
11141315 TTTCAAGTGTCGGGTTTAGGGTTTA
1 TTTCAAGTATAGGGTTTATGGTTTA
11141340 GGTTTTAGGG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.21, C:0.04, G:0.28, T:0.47
Consensus pattern (28 bp):
TTTCAAGTATAGGGTTTATGGTTTAAGA
Found at i:11141926 original size:14 final size:16
Alignment explanation
Indices: 11141900--11141931 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
11141890 GGCTGCAAAT
11141900 TCGGAGTGTACTC-CA
1 TCGGAGTGTACTCGCA
11141915 TCGGAG-GTACTCGCA
1 TCGGAGTGTACTCGCA
11141930 TC
1 TC
11141932 ATCCGGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (16 bp):
TCGGAGTGTACTCGCA
Found at i:11144201 original size:20 final size:21
Alignment explanation
Indices: 11144176--11144220 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
11144166 TTTACTTACT
11144176 ATTACTAAC-AACAAAATAAA
1 ATTACTAACTAACAAAATAAA
*
11144196 ATTACTAACTAACAAAATTAA
1 ATTACTAACTAACAAAATAAA
11144217 ATTA
1 ATTA
11144221 AAGTAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (21 bp):
ATTACTAACTAACAAAATAAA
Found at i:11144322 original size:23 final size:22
Alignment explanation
Indices: 11144295--11144372 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 22
11144285 CTATAACAAC
11144295 ATTAAATAACAAATCAATTAAAA
1 ATTAAATAACAAATCAA-TAAAA
*
11144318 ATTAAATTAAACAAAACAA-AAAA
1 ATTAAA-T-AACAAATCAATAAAA
* *
11144341 CTTAAAATAATCAAATTAAGTAACAA
1 ATT-AAATAA-CAAATCAA-TAA-AA
11144367 ATTAAA
1 ATTAAA
11144373 ATATTTTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
22 2 0.05
23 19 0.44
24 4 0.09
25 14 0.33
26 4 0.09
ACGTcount: A:0.65, C:0.09, G:0.01, T:0.24
Consensus pattern (22 bp):
ATTAAATAACAAATCAATAAAA
Found at i:11144609 original size:4 final size:4
Alignment explanation
Indices: 11144602--11144635 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
11144592 TTCTTCCTCC
11144602 TTCT TTCT TTCT TTCT TTC- -TCT TTCT TTCT TTCT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT
11144636 ATTTTCCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
4 26 0.93
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTCT
Found at i:11144618 original size:22 final size:23
Alignment explanation
Indices: 11144592--11144643 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
11144582 TCCTTCTTCC
11144592 TTCTTCCTCCTTCTTTCTTTCT-
1 TTCTTCCTCCTTCTTTCTTTCTA
* *
11144614 TTCTTTCTCTTTCTTTCTTTCTA
1 TTCTTCCTCCTTCTTTCTTTCTA
11144637 TT-TTCCT
1 TTCTTCCT
11144644 TCAAATTTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 24 0.92
23 2 0.08
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (23 bp):
TTCTTCCTCCTTCTTTCTTTCTA
Found at i:11144624 original size:14 final size:14
Alignment explanation
Indices: 11144607--11144635 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
11144597 CCTCCTTCTT
11144607 TCTTTCTTTCTTTC
1 TCTTTCTTTCTTTC
11144621 TCTTTCTTTCTTTC
1 TCTTTCTTTCTTTC
11144635 T
1 T
11144636 ATTTTCCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (14 bp):
TCTTTCTTTCTTTC
Found at i:11152330 original size:31 final size:33
Alignment explanation
Indices: 11152252--11152330 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
11152242 TAAGTCCTCC
11152252 TATATTAATTTTAATTT--T-TTTAAAAAATATT
1 TATATT-ATTTTAATTTAATATTTAAAAAATATT
*
11152283 TATATTATTTTAATTTAATATTTAATAAAT-TT
1 TATATTATTTTAATTTAATATTTAAAAAATATT
11152315 ATATATT-TTTT-ATTTA
1 -TATATTATTTTAATTTA
11152331 TTGAAAATTT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
30 10 0.23
31 11 0.26
32 7 0.16
33 15 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (33 bp):
TATATTATTTTAATTTAATATTTAAAAAATATT
Found at i:11152739 original size:16 final size:16
Alignment explanation
Indices: 11152717--11152755 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
11152707 GTTTGTTTCA
*
11152717 CTGTAATGGAATAAAG
1 CTGTAATGAAATAAAG
*
11152733 TTGTAATGAAATAAAG
1 CTGTAATGAAATAAAG
11152749 CTGTAAT
1 CTGTAAT
11152756 CAGTAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (16 bp):
CTGTAATGAAATAAAG
Found at i:11152831 original size:39 final size:41
Alignment explanation
Indices: 11152788--11152890 Score: 120
Period size: 44 Copynumber: 2.5 Consensus size: 41
11152778 AATGGAATAA
11152788 AATAGAGTTGTAATAGTATTCTTGTGTTTAGTTGAATGGAATAG
1 AATAGAGTTGTAATAGTATTCTTGTGTTTAGTTGAATGG---AG
* * *
11152832 AATAGAGTTGTAATAGCATTCTTGTGTTTGGTTGAAT-G-T
1 AATAGAGTTGTAATAGTATTCTTGTGTTTAGTTGAATGGAG
*
11152871 AATAGATGTTGCAATAGTAT
1 AATAGA-GTTGTAATAGTAT
11152891 AACGAAAGAG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
39 6 0.11
40 11 0.21
43 1 0.02
44 35 0.66
ACGTcount: A:0.31, C:0.04, G:0.24, T:0.41
Consensus pattern (41 bp):
AATAGAGTTGTAATAGTATTCTTGTGTTTAGTTGAATGGAG
Found at i:11152875 original size:44 final size:44
Alignment explanation
Indices: 11152768--11152876 Score: 182
Period size: 44 Copynumber: 2.5 Consensus size: 44
11152758 GTAATTTAAT
* *
11152768 TGTTTGGTTGAATGGAATAAAATAGAGTTGTAATAGTATTCTTG
1 TGTTTGGTTGAATGGAATAGAATAGAGTTGTAATAGCATTCTTG
*
11152812 TGTTTAGTTGAATGGAATAGAATAGAGTTGTAATAGCATTCTTG
1 TGTTTGGTTGAATGGAATAGAATAGAGTTGTAATAGCATTCTTG
*
11152856 TGTTTGGTTGAATGTAATAGA
1 TGTTTGGTTGAATGGAATAGA
11152877 TGTTGCAATA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 60 1.00
ACGTcount: A:0.31, C:0.03, G:0.26, T:0.40
Consensus pattern (44 bp):
TGTTTGGTTGAATGGAATAGAATAGAGTTGTAATAGCATTCTTG
Found at i:11153061 original size:60 final size:56
Alignment explanation
Indices: 11152975--11153102 Score: 134
Period size: 56 Copynumber: 2.2 Consensus size: 56
11152965 TTTTAATAAG
* * *
11152975 ATTATTATTAAATATATTTCATTAAAAAAATAATAAATAATTTAATCATATT-TTAACATA
1 ATTATTATTAAATAAATTTC---AATAAAATAATAAAT-A-TTAATAATATTCTTAACATA
* * *
11153035 ATTATTATTAAATAAAATTT-AATAAAATAATATATATTAATAATATTCTTAATATG
1 ATTATTATTAAAT-AAATTTCAATAAAATAATAAATATTAATAATATTCTTAACATA
11153091 ATTATTATTAAA
1 ATTATTATTAAA
11153103 ATATGAATTA
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
55 10 0.17
56 19 0.32
57 13 0.22
60 13 0.22
61 5 0.08
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.45
Consensus pattern (56 bp):
ATTATTATTAAATAAATTTCAATAAAATAATAAATATTAATAATATTCTTAACATA
Found at i:11166270 original size:83 final size:83
Alignment explanation
Indices: 11166131--11166299 Score: 302
Period size: 83 Copynumber: 2.0 Consensus size: 83
11166121 CTATTATTGC
* *
11166131 TATGTTTTGGAACATATAAACTTGGATGACTACTTTTCCTCAAACTAAGACCTGAAAATAGCAAC
1 TATGTTCTGAAACATATAAACTTGGATGACTACTTTTCCTCAAACTAAGACCTGAAAATAGCAAC
11166196 TTGGTTCGAAAAATGTTG
66 TTGGTTCGAAAAATGTTG
* *
11166214 TATGTTCTGAAACATATAAACTTGGATGACTACTTTTCGTCAAACTAAGACTTGAAAATAGCAAC
1 TATGTTCTGAAACATATAAACTTGGATGACTACTTTTCCTCAAACTAAGACCTGAAAATAGCAAC
11166279 TTGGTTCGAAAAATGTTG
66 TTGGTTCGAAAAATGTTG
11166297 TAT
1 TAT
11166300 AATGAAGCAT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.33
Consensus pattern (83 bp):
TATGTTCTGAAACATATAAACTTGGATGACTACTTTTCCTCAAACTAAGACCTGAAAATAGCAAC
TTGGTTCGAAAAATGTTG
Found at i:11167350 original size:61 final size:59
Alignment explanation
Indices: 11167184--11167353 Score: 202
Period size: 58 Copynumber: 2.9 Consensus size: 59
11167174 ATCCCATGAG
* * * *
11167184 ATTATGTTATGATTTTTA-T-AATTCATATTTTAATAATAATTATATTAAAATGTTATTAA
1 ATTATATTATTATTTTTATTAAATT-ATA-TTTAATAATAATTATATTAAAATATGATTAA
* * *
11167243 ATTATA-TAGTATTTTTATTAAATTTTATTTAATAATAATTAGATTAAAATATGATTAA
1 ATTATATTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATGATTAA
**
11167301 ATTATTTATTATTATTTTTATTAAATTATATTTAATAATAATCCTATTAAAAT
1 ATTA--TATTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAAT
11167354 TTAATAACAA
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
58 41 0.44
59 8 0.09
60 6 0.06
61 39 0.41
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (59 bp):
ATTATATTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATGATTAA
Found at i:11167558 original size:73 final size:73
Alignment explanation
Indices: 11167433--11167595 Score: 299
Period size: 73 Copynumber: 2.2 Consensus size: 73
11167423 TATGCAATTG
11167433 CAACCTCTATTTCATTCAACCAAACAATTGAATTACTAATTACAACTTTATTCCATTACAACTAT
1 CAACC-CTATTTCATTCAACCAAACAATTGAATTACTAATTACAACTTTATTCCATTACAACTAT
11167498 ATTCCATTA
65 ATTCCATTA
*
11167507 CAACCCTATTTCATTCAACCAAACAATTGAATTACTGATTACAACTTTATTCCATTACAACTATA
1 CAACCCTATTTCATTCAACCAAACAATTGAATTACTAATTACAACTTTATTCCATTACAACTATA
11167572 TTCCATTA
66 TTCCATTA
*
11167580 CAACCCTATTTTATTC
1 CAACCCTATTTCATTC
11167596 CCCAAACCAA
Statistics
Matches: 87, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
73 82 0.94
74 5 0.06
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.37
Consensus pattern (73 bp):
CAACCCTATTTCATTCAACCAAACAATTGAATTACTAATTACAACTTTATTCCATTACAACTATA
TTCCATTA
Found at i:11167589 original size:16 final size:16
Alignment explanation
Indices: 11167471--11167583 Score: 82
Period size: 16 Copynumber: 6.5 Consensus size: 16
11167461 TGAATTACTA
*
11167471 ATTACAACTTTATTCC
1 ATTACAACTATATTCC
11167487 ATTACAACTATATTCC
1 ATTACAACTATATTCC
** *
11167503 ATTACAACCCTATTTC
1 ATTACAACTATATTCC
* *
11167519 ATTCAACCAAACAATTGAATTACTG
1 ATT--A-C-AACTA-T--ATT-C-C
*
11167544 ATTACAACTTTATTCC
1 ATTACAACTATATTCC
11167560 ATTACAACTATATTCC
1 ATTACAACTATATTCC
11167576 ATTACAAC
1 ATTACAAC
11167584 CCTATTTTAT
Statistics
Matches: 76, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
16 54 0.71
17 1 0.01
18 4 0.05
19 1 0.01
20 4 0.05
21 4 0.05
22 1 0.01
23 4 0.05
25 3 0.04
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.36
Consensus pattern (16 bp):
ATTACAACTATATTCC
Found at i:11181206 original size:16 final size:17
Alignment explanation
Indices: 11181168--11181212 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
11181158 TTATATGAAA
*
11181168 ATATATTTATTTACTTTT
1 ATAT-TTTAATTACTTTT
*
11181186 CTATTTTAATTAC-TTT
1 ATATTTTAATTACTTTT
11181202 ATATTTTAATT
1 ATATTTTAATT
11181213 TTCTTATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 13 0.54
17 8 0.33
18 3 0.12
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (17 bp):
ATATTTTAATTACTTTT
Found at i:11184099 original size:6 final size:6
Alignment explanation
Indices: 11184088--11184112 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
11184078 TCTAATGGAA
11184088 TCTCAT TCTCAT TCTCAT TCTCAT T
1 TCTCAT TCTCAT TCTCAT TCTCAT T
11184113 TGAAGAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (6 bp):
TCTCAT
Found at i:11184908 original size:3 final size:3
Alignment explanation
Indices: 11184900--11184935 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
11184890 TACATCCCAA
*
11184900 AAT AAT AAT AAT AAT CAT AAT AAT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
11184936 GAATAGAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:11186134 original size:21 final size:21
Alignment explanation
Indices: 11186108--11186173 Score: 105
Period size: 21 Copynumber: 3.1 Consensus size: 21
11186098 GGTTCAAATA
11186108 GGTTTGGTTTAAATGAATTTG
1 GGTTTGGTTTAAATGAATTTG
*
11186129 GGTTTGGTTTAAATGAATGTG
1 GGTTTGGTTTAAATGAATTTG
*
11186150 GGTTTGGTTTAAATAGGATTTG
1 GGTTTGGTTTAAAT-GAATTTG
11186172 GG
1 GG
11186174 CTTAATGGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
21 34 0.83
22 7 0.17
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (21 bp):
GGTTTGGTTTAAATGAATTTG
Found at i:11186585 original size:23 final size:23
Alignment explanation
Indices: 11186543--11186605 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 23
11186533 AAGTGTGATT
*
11186543 AAAAGAGGAAGAAAATAGAAAAG
1 AAAAGAGAAAGAAAATAGAAAAG
*
11186566 AAAAGAGAAAG-AAATAAGAAATG
1 AAAAGAGAAAGAAAAT-AGAAAAG
11186589 AATGAGAGAGAAAGAAA
1 AA--A-AGAGAAAGAAA
11186606 GATGAGAGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 4 0.12
23 18 0.55
25 1 0.03
26 8 0.24
27 2 0.06
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.06
Consensus pattern (23 bp):
AAAAGAGAAAGAAAATAGAAAAG
Found at i:11191990 original size:3 final size:3
Alignment explanation
Indices: 11191982--11192017 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
11191972 TACATCCCAA
*
11191982 AAT AAT AAT AAT AAT CAT AAT AAT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
11192018 GAATAGAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:11193080 original size:7 final size:7
Alignment explanation
Indices: 11193065--11193137 Score: 60
Period size: 7 Copynumber: 10.7 Consensus size: 7
11193055 TTTTGAAAAA
11193065 GTCAACG
1 GTCAACG
*
11193072 GTTAACG
1 GTCAACG
11193079 GTCAACG
1 GTCAACG
*
11193086 GTCAA-A
1 GTCAACG
* *
11193092 GTTAACA
1 GTCAACG
11193099 GTCAACG
1 GTCAACG
* *
11193106 ATCAA-A
1 GTCAACG
*
11193112 GTCAACT
1 GTCAACG
11193119 GTCAACG
1 GTCAACG
*
11193126 GTCAACA
1 GTCAACG
11193133 GTCAA
1 GTCAA
11193138 TCAACACCGG
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
6 8 0.15
7 44 0.85
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (7 bp):
GTCAACG
Found at i:11193097 original size:20 final size:20
Alignment explanation
Indices: 11193072--11193130 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 20
11193062 AAAGTCAACG
*
11193072 GTTAACGGTCAACGGTCAAA
1 GTTAACAGTCAACGGTCAAA
*
11193092 GTTAACAGTCAACGATCAAA
1 GTTAACAGTCAACGGTCAAA
* *
11193112 GTCAACTGTCAACGGTCAA
1 GTTAACAGTCAACGGTCAA
11193131 CAGTCAATCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (20 bp):
GTTAACAGTCAACGGTCAAA
Found at i:11193148 original size:21 final size:21
Alignment explanation
Indices: 11193124--11193174 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
11193114 CAACTGTCAA
11193124 CGGTCAACAGTCAATCAACAC
1 CGGTCAACAGTCAATCAACAC
** **
11193145 CGGTCAATGGTCGGTCAACAC
1 CGGTCAACAGTCAATCAACAC
*
11193166 CAGTCAACA
1 CGGTCAACA
11193175 TCGGTCAATG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.31, G:0.20, T:0.16
Consensus pattern (21 bp):
CGGTCAACAGTCAATCAACAC
Found at i:11193180 original size:31 final size:32
Alignment explanation
Indices: 11193124--11193186 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 32
11193114 CAACTGTCAA
*
11193124 CGGTCAACAGTCAATCAACACCGGTCAATGGT
1 CGGTCAACAGCCAATCAACACCGGTCAATGGT
* *
11193156 CGGTCAACA-CCAGTCAACATCGGTCAATGGT
1 CGGTCAACAGCCAATCAACACCGGTCAATGGT
11193187 TTGACTTGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 19 0.68
32 9 0.32
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (32 bp):
CGGTCAACAGCCAATCAACACCGGTCAATGGT
Found at i:11193239 original size:15 final size:15
Alignment explanation
Indices: 11193219--11193248 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11193209 TGGTTCATTT
11193219 GGTTTGGTTCAAATG
1 GGTTTGGTTCAAATG
*
11193234 GGTTTGGTTTAAATG
1 GGTTTGGTTCAAATG
11193249 AATTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.03, G:0.33, T:0.43
Consensus pattern (15 bp):
GGTTTGGTTCAAATG
Found at i:11193258 original size:21 final size:21
Alignment explanation
Indices: 11193232--11193299 Score: 109
Period size: 21 Copynumber: 3.2 Consensus size: 21
11193222 TTGGTTCAAA
11193232 TGGGTTTGGTTTAAATGAATT
1 TGGGTTTGGTTTAAATGAATT
*
11193253 TGGGTTTGGTTTAAATGAATG
1 TGGGTTTGGTTTAAATGAATT
*
11193274 TGGGTTTGGTTTAAATAGGATT
1 TGGGTTTGGTTTAAAT-GAATT
11193296 TGGG
1 TGGG
11193300 CTTAATGGGT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
21 36 0.84
22 7 0.16
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (21 bp):
TGGGTTTGGTTTAAATGAATT
Found at i:11208133 original size:22 final size:22
Alignment explanation
Indices: 11208105--11208158 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
11208095 CTGTTTTGAT
11208105 ACTCTCTGTTTTGGCCATTTAA
1 ACTCTCTGTTTTGGCCATTTAA
*
11208127 ACTCTCTATTTTGGCCATTTAA
1 ACTCTCTGTTTTGGCCATTTAA
11208149 ACTCTCTGTT
1 ACTCTCTGTT
11208159 AAACTCTCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.19, C:0.24, G:0.11, T:0.46
Consensus pattern (22 bp):
ACTCTCTGTTTTGGCCATTTAA
Found at i:11208162 original size:12 final size:12
Alignment explanation
Indices: 11208145--11208177 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
11208135 TTTTGGCCAT
11208145 TTAAACTCTCTG
1 TTAAACTCTCTG
11208157 TTAAACTCTCTG
1 TTAAACTCTCTG
11208169 TTAAACTCT
1 TTAAACTCT
11208178 GTTAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.42
Consensus pattern (12 bp):
TTAAACTCTCTG
Found at i:11214134 original size:58 final size:58
Alignment explanation
Indices: 11214046--11214191 Score: 183
Period size: 58 Copynumber: 2.5 Consensus size: 58
11214036 ATATATTATA
* *
11214046 ATTTTTACT-AATTCATATTTTAATAATAATTATATTAAAA-AT-ATT-ATTAAATTACAT
1 ATTTTTATTAAATT-ATA-TTTAATAATAATTATATTAAAATATAATTAAATAAATTA-AT
* *
11214103 ATTATTTTATTAAATTGTATTTAATAATAATTATGTTAAAATATAATTAAATAAATTAAT
1 A-T-TTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATAAATTAAT
11214163 ATTTTTATTAAATTATATTTAATAATAAT
1 ATTTTTATTAAATTATATTTAATAATAAT
11214192 CATTAAAATT
Statistics
Matches: 78, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
57 1 0.01
58 48 0.62
59 11 0.14
60 10 0.13
61 8 0.10
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (58 bp):
ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATAAATTAAT
Found at i:11214330 original size:39 final size:44
Alignment explanation
Indices: 11214275--11214379 Score: 114
Period size: 46 Copynumber: 2.5 Consensus size: 44
11214265 TTTCTTATGC
*
11214275 TATTACAGCATC-ATTCCATT-CAACCAA-ACACAA-GAA-TA-T
1 TATTACAGC-TCTATTCCATTCCAACCAACAAACAATGAATTACT
*
11214314 TATTACAGCTCTATTCCATTCCAATCAACCAAACAATTGAATTACT
1 TATTACAGCTCTATTCCATTCCAACCAA-CAAACAA-TGAATTACT
*
11214360 GATTACAGCTCTATTCCATT
1 TATTACAGCTCTATTCCATT
11214380 ACAGCTCTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
38 2 0.04
39 17 0.31
40 6 0.11
42 5 0.09
44 3 0.05
45 2 0.04
46 20 0.36
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (44 bp):
TATTACAGCTCTATTCCATTCCAACCAACAAACAATGAATTACT
Found at i:11214378 original size:46 final size:44
Alignment explanation
Indices: 11214286--11214379 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
11214276 ATTACAGCAT
* *
11214286 CATTCCATTCAACCAAACACAAGAATATTATTACAGCTCTATTC
1 CATTCCAATCAACCAAACACAAGAATATGATTACAGCTCTATTC
*
11214330 CATTCCAATCAACCAAACA-ATTGAATTACTGATTACAGCTCTATTC
1 CATTCCAATCAACCAAACACA-AGAA-TA-TGATTACAGCTCTATTC
11214376 CATT
1 CATT
11214380 ACAGCTCTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 21 0.48
45 2 0.05
46 20 0.45
ACGTcount: A:0.37, C:0.27, G:0.05, T:0.31
Consensus pattern (44 bp):
CATTCCAATCAACCAAACACAAGAATATGATTACAGCTCTATTC
Found at i:11214382 original size:16 final size:16
Alignment explanation
Indices: 11214361--11214448 Score: 151
Period size: 16 Copynumber: 5.5 Consensus size: 16
11214351 TGAATTACTG
11214361 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
11214377 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
11214393 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
11214409 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
11214425 ATTACA-CTTCTATTCC
1 ATTACAGC-TCTATTCC
11214441 ATTACAGC
1 ATTACAGC
11214449 GAACCAAACA
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
15 1 0.01
16 66 0.97
17 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:11217345 original size:9 final size:9
Alignment explanation
Indices: 11217331--11217364 Score: 50
Period size: 10 Copynumber: 3.6 Consensus size: 9
11217321 TATAGATACG
11217331 ATTTTATTT
1 ATTTTATTT
11217340 ATTTTATTT
1 ATTTTATTT
11217349 ATTTTTATTT
1 A-TTTTATTT
11217359 GATTTT
1 -ATTTT
11217365 CACATTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 10 0.43
10 12 0.52
11 1 0.04
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (9 bp):
ATTTTATTT
Found at i:11217356 original size:10 final size:10
Alignment explanation
Indices: 11217332--11217364 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
11217322 ATAGATACGA
11217332 TTTTATTTA-
1 TTTTATTTAT
11217341 TTTTATTTAT
1 TTTTATTTAT
11217351 TTTTATTTGAT
1 TTTTATTT-AT
11217362 TTT
1 TTT
11217365 CACATTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.41
10 8 0.36
11 5 0.23
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (10 bp):
TTTTATTTAT
Found at i:11237824 original size:39 final size:39
Alignment explanation
Indices: 11237770--11237848 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
11237760 TAGTGAATGT
11237770 GTATGATGGTTTTTTGGGGCCACAATCACCATAAACTTC
1 GTATGATGGTTTTTTGGGGCCACAATCACCATAAACTTC
11237809 GTATGATGGTTTTTTGGGGCCACAATCACCATAAACTTC
1 GTATGATGGTTTTTTGGGGCCACAATCACCATAAACTTC
11237848 G
1 G
11237849 GGTTCTAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (39 bp):
GTATGATGGTTTTTTGGGGCCACAATCACCATAAACTTC
Found at i:11239456 original size:45 final size:45
Alignment explanation
Indices: 11239375--11239476 Score: 132
Period size: 45 Copynumber: 2.3 Consensus size: 45
11239365 GTCTTTCTAT
* * *
11239375 TATGGTCTTACTCACTTCTATCATGATGCTATAACATCTAACAAC
1 TATGGTCTTACTCACTTCTATCATGATACCACAACATCTAACAAC
* * ** *
11239420 TATGGTTTTACTCACTTTTATCATGATACCACAACATCTTTCAGC
1 TATGGTCTTACTCACTTCTATCATGATACCACAACATCTAACAAC
11239465 TATGGTCTTACT
1 TATGGTCTTACT
11239477 TTTTTTTGCT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (45 bp):
TATGGTCTTACTCACTTCTATCATGATACCACAACATCTAACAAC
Found at i:11247038 original size:23 final size:23
Alignment explanation
Indices: 11246965--11247113 Score: 126
Period size: 23 Copynumber: 6.4 Consensus size: 23
11246955 TATATGGAAC
* * *
11246965 AAACAGAGAGTAC-CAAAGTACT
1 AAACAGAGAGCACACACAGTGCT
*
11246987 -AACAGAGAGCACATA-AGTGCT
1 AAACAGAGAGCACACACAGTGCT
*
11247008 GGGCAACAGAGAGCACACACAGTGCT
1 ---AAACAGAGAGCACACACAGTGCT
* * *
11247034 AAACAGAGAGTACACAAAGTACT
1 AAACAGAGAGCACACACAGTGCT
*
11247057 AATCAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACACAGTGCT
*
11247080 AATAACAGAGAGCACGAGAC-GTGCT
1 -A-AACAGAGAGCAC-ACACAGTGCT
11247105 AAACAGAGA
1 AAACAGAGA
11247114 ACGCGCTAGT
Statistics
Matches: 104, Mismatches: 14, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
21 16 0.15
22 1 0.01
23 46 0.44
24 2 0.02
25 30 0.29
26 9 0.09
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.11
Consensus pattern (23 bp):
AAACAGAGAGCACACACAGTGCT
Found at i:11247043 original size:25 final size:25
Alignment explanation
Indices: 11247015--11247113 Score: 86
Period size: 25 Copynumber: 4.1 Consensus size: 25
11247005 GCTGGGCAAC
11247015 AGAGAGCACACACAGTGCTAAACAG
1 AGAGAGCACACACAGTGCTAAACAG
* *
11247040 AGAGTA-CACA-A-AGTACTAATC--
1 AGAG-AGCACACACAGTGCTAAACAG
*
11247061 AGAGAGCACACACAGTGCTAATA-AC
1 AGAGAGCACACACAGTGCTAA-ACAG
*
11247086 AGAGAGCACGAGAC-GTGCTAAACAG
1 AGAGAGCAC-ACACAGTGCTAAACAG
11247111 AGA
1 AGA
11247114 ACGCGCTAGT
Statistics
Matches: 59, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
20 1 0.02
21 8 0.14
22 1 0.02
23 15 0.25
24 2 0.03
25 28 0.47
26 4 0.07
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.11
Consensus pattern (25 bp):
AGAGAGCACACACAGTGCTAAACAG
Found at i:11247087 original size:71 final size:69
Alignment explanation
Indices: 11246965--11247113 Score: 203
Period size: 71 Copynumber: 2.1 Consensus size: 69
11246955 TATATGGAAC
* **
11246965 AAACAGAGAGTACCAAAGTACTAACAGAGAGCACATAAGTGCTGGGCAACAGAGAGCAC-ACACA
1 AAACAGAGAGTACCAAAGTACTAACAGAGAGCACACAAGTGCTGAACAACAGAGAGCACGACAC-
11247029 GTGCT
65 GTGCT
* *
11247034 AAACAGAGAGTACACAAAGTACTAATCAGAGAGCACACACAGTGCT-AATAACAGAGAGCACGAG
1 AAACAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACACA-AGTGCTGAACAACAGAGAGCACGAC
11247098 ACGTGCT
63 ACGTGCT
11247105 AAACAGAGA
1 AAACAGAGA
11247114 ACGCGCTAGT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
69 13 0.18
70 11 0.15
71 38 0.54
72 9 0.13
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.11
Consensus pattern (69 bp):
AAACAGAGAGTACCAAAGTACTAACAGAGAGCACACAAGTGCTGAACAACAGAGAGCACGACACG
TGCT
Found at i:11249865 original size:44 final size:46
Alignment explanation
Indices: 11249796--11249892 Score: 128
Period size: 44 Copynumber: 2.2 Consensus size: 46
11249786 ATTGCAGCAT
*
11249796 CATTCCATTCAACCAAACACAAGAA-TACT-ATTACAGTTATATTC
1 CATTACATTCAACCAAACACAAGAATTACTGATTACAGTTATATTC
* * *
11249840 CATTACATTCAACCAAACA-ATAGAATTATTGATTATAGTTTTATTC
1 CATTACATTCAACCAAACACA-AGAATTACTGATTACAGTTATATTC
11249886 CATTACA
1 CATTACA
11249893 ACCTTATTAC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
43 1 0.02
44 22 0.48
45 3 0.07
46 20 0.43
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (46 bp):
CATTACATTCAACCAAACACAAGAATTACTGATTACAGTTATATTC
Found at i:11249899 original size:16 final size:16
Alignment explanation
Indices: 11249880--11249917 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
11249870 GATTATAGTT
11249880 TTATTCCATTACAACC
1 TTATTCCATTACAACC
*
11249896 TTATTACATTACAACC
1 TTATTCCATTACAACC
*
11249912 CTATTC
1 TTATTC
11249918 AATTCCAGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (16 bp):
TTATTCCATTACAACC
Found at i:11251975 original size:13 final size:13
Alignment explanation
Indices: 11251957--11251981 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11251947 TCCAAACCAT
11251957 AATTAATATTATA
1 AATTAATATTATA
11251970 AATTAATATTAT
1 AATTAATATTAT
11251982 TACAAATCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AATTAATATTATA
Found at i:11263749 original size:37 final size:37
Alignment explanation
Indices: 11263693--11263988 Score: 364
Period size: 37 Copynumber: 8.0 Consensus size: 37
11263683 GTTATTGGAT
* *
11263693 CACCGGCACAAAGCCTGCTAGGCACATAGCCTAAATA
1 CACCGGCACTAAGCCTGCTAGGCACATAGCCTGAATA
* * *
11263730 CACCGGCACGAAGCTTGCTAGGCACACAGCCTGAATA
1 CACCGGCACTAAGCCTGCTAGGCACATAGCCTGAATA
* * * *
11263767 CAGCAGCAC-AAGGCCTGCTAGGCACACAGTCTGAATA
1 CACCGGCACTAA-GCCTGCTAGGCACATAGCCTGAATA
11263804 CACCGGCACTAAGCCTGCTAGGCACATAG-CTCGAATA
1 CACCGGCACTAAGCCTGCTAGGCACATAGCCT-GAATA
* *
11263841 CACCGGCACTAAGCCTGCTAGCCACATAGCTTGAATA
1 CACCGGCACTAAGCCTGCTAGGCACATAGCCTGAATA
* *
11263878 CATCGGCACTAAGCCTGCTAGGCACATAGCCCGAATA
1 CACCGGCACTAAGCCTGCTAGGCACATAGCCTGAATA
* * *
11263915 CACCGGC-GTAAAGCCTGCTAGCCACATAGCTTGAATA
1 CACCGGCACT-AAGCCTGCTAGGCACATAGCCTGAATA
** * *
11263952 CATAGGCACTAAGCCTACTAGGCACATAGCCCGAATA
1 CACCGGCACTAAGCCTGCTAGGCACATAGCCTGAATA
11263989 TTGTGCAAGC
Statistics
Matches: 224, Mismatches: 29, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
36 5 0.02
37 215 0.96
38 4 0.02
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.16
Consensus pattern (37 bp):
CACCGGCACTAAGCCTGCTAGGCACATAGCCTGAATA
Found at i:11266626 original size:3 final size:3
Alignment explanation
Indices: 11266618--11266642 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
11266608 TATGGGGTAG
11266618 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
11266643 GATGATGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:11268882 original size:79 final size:78
Alignment explanation
Indices: 11268784--11269369 Score: 546
Period size: 79 Copynumber: 7.4 Consensus size: 78
11268774 TGTGGTTTCA
* * *
11268784 ATCTACCCCATGATTGGGGTAAGAGATTGGATGGTTGTGATCTGCCTCATGATCGGGGTAAGAGA
1 ATCTGCCCCATGATCGGGGTAAGAGATTGGATGGTTGTGATCTGCCCCATGATCGGGGTAAGAGA
*
11268849 TCAGATGGTTTTT
66 TCGGATGGTTTTT
* * *
11268862 AGTCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTGCGATCTACCCCATGATCGGGGTAAGAG
1 A-TCTGCCCCATGATCGGGGTAAGAGATTGGATGGTTGTGATCTGCCCCATGATCGGGGTAAGAG
* *
11268927 ATCAGATGTTTTTCT
65 ATCGGATGGTTTT-T
* ** * ***
11268942 ATCTGCCCCATGATCGGGATAAGAGATTGGATGACTGCGATCTGCCCCATGATCTACGTAAGAGA
1 ATCTGCCCCATGATCGGGGTAAGAGATTGGATGGTTGTGATCTGCCCCATGATCGGGGTAAGAGA
*
11269007 TCGGATGATTTTT
66 TCGGATGGTTTTT
* * * * *
11269020 AATCTGCCCCATGATCGGGGTAAGAGATTGGATGGTTTTCAATCTACCTCATGATTGGGGTAAGA
1 -ATCTGCCCCATGATCGGGGTAAGAGATTGGATGGTTGT-GATCTGCCCCATGATCGGGGTAAGA
* ***
11269085 GATTGGATGGTTGCG
64 GATCGGATGGTTTTT
* * ** * * * * *
11269100 ATCTGCCCCATAATCGAGGTAAGAGATCAGATGGTTTTCAATCTGCCCCATGATTGAGGTAAAAG
1 ATCTGCCCCATGATCGGGGTAAGAGATTGGATGGTTGT-GATCTGCCCCATGATCGGGGTAAGAG
* ***
11269165 ATTGGATGGTTGCG
65 ATCGGATGGTTTTT
* * * * * *
11269179 ATCTACCTCATGATCGAGGTAAGAGATCGGATGGCTT-TCAATCTGCCTCATGATCGGGGTAAGA
1 ATCTGCCCCATGATCGGGGTAAGAGATTGGATGG-TTGT-GATCTGCCCCATGATCGGGGTAAGA
*
11269243 GATTC-GATGGTTTTCA
64 GA-TCGGATGGTTTT-T
* ** * * * * *
11269259 ATCTACCTTATGATCGGGGTAAGTGATTGGATGGTTGCGATCTACCCCATGATCGGAGTAAAAGA
1 ATCTGCCCCATGATCGGGGTAAGAGATTGGATGGTTGTGATCTGCCCCATGATCGGGGTAAGAGA
*
11269324 TCGTATGGTTTTT
66 TCGGATGGTTTTT
** *
11269337 AATCTGCATCATAATCGGGGTAAGAGATTGGAT
1 -ATCTGCCCCATGATCGGGGTAAGAGATTGGAT
11269370 TTGATGTCGA
Statistics
Matches: 429, Mismatches: 69, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
78 4 0.01
79 362 0.84
80 63 0.15
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (78 bp):
ATCTGCCCCATGATCGGGGTAAGAGATTGGATGGTTGTGATCTGCCCCATGATCGGGGTAAGAGA
TCGGATGGTTTTT
Found at i:11269169 original size:198 final size:197
Alignment explanation
Indices: 11268784--11269369 Score: 730
Period size: 198 Copynumber: 3.0 Consensus size: 197
11268774 TGTGGTTTCA
* ** * * *
11268784 ATCTACCCCATGATTGGGGTAAGAGATTGGATG-GTTGT-GATCTGCCTCATGATCGGGGTAAGA
1 ATCTACCCCATGATCGACGTAAGAGATCGGATGACTT-TCAATCTGCCTCATGATCGGGGTAAGA
* * * * * *
11268847 GATCAGATGGTTTTTAGTCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTGCGATCTACCCCA
65 GATTAGATGGTTTTCAATCTACCTCATGATCGGGGTAAGAGATTGGATGGTTGCGATCTACCCCA
* * *
11268912 TGATCGGGGTAAGAGATCAGATGTTTTTCTATCTGCCCCATGATCGGGATAAGAGATTGGATGAC
130 TGATC-GGGTAAGAGATCAGATGGTTTTCAATCTGCCCCATGATCGGGATAAAAGATTGGATGAC
11268977 TGCG
194 TGCG
* * * * *
11268981 ATCTGCCCCATGATCTACGTAAGAGATCGGATGATTTTTAATCTGCCCCATGATCGGGGTAAGAG
1 ATCTACCCCATGATCGACGTAAGAGATCGGATGACTTTCAATCTGCCTCATGATCGGGGTAAGAG
* * *
11269046 ATTGGATGGTTTTCAATCTACCTCATGATTGGGGTAAGAGATTGGATGGTTGCGATCTGCCCCAT
66 ATTAGATGGTTTTCAATCTACCTCATGATCGGGGTAAGAGATTGGATGGTTGCGATCTACCCCAT
* * **
11269111 AATCGAGGTAAGAGATCAGATGGTTTTCAATCTGCCCCATGATTGAGG-TAAAAGATTGGATGGT
131 GATCG-GGTAAGAGATCAGATGGTTTTCAATCTGCCCCATGATCG-GGATAAAAGATTGGATGAC
11269175 TGCG
194 TGCG
* * *
11269179 ATCTACCTCATGATCGAGGTAAGAGATCGGATGGCTTTCAATCTGCCTCATGATCGGGGTAAGAG
1 ATCTACCCCATGATCGACGTAAGAGATCGGATGACTTTCAATCTGCCTCATGATCGGGGTAAGAG
* * *
11269244 ATTCGATGGTTTTCAATCTACCTTATGATCGGGGTAAGTGATTGGATGGTTGCGATCTACCCCAT
66 ATTAGATGGTTTTCAATCTACCTCATGATCGGGGTAAGAGATTGGATGGTTGCGATCTACCCCAT
* * ** * * *
11269309 GATCGGAGTAAAAGATC-GTATGGTTTTTAATCTGCATCATAATCGGGGTAAGAGATTGGAT
131 GATCGG-GTAAGAGATCAG-ATGGTTTTCAATCTGCCCCATGATCGGGATAAAAGATTGGAT
11269370 TTGATGTCGA
Statistics
Matches: 336, Mismatches: 46, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
197 33 0.10
198 301 0.90
199 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (197 bp):
ATCTACCCCATGATCGACGTAAGAGATCGGATGACTTTCAATCTGCCTCATGATCGGGGTAAGAG
ATTAGATGGTTTTCAATCTACCTCATGATCGGGGTAAGAGATTGGATGGTTGCGATCTACCCCAT
GATCGGGTAAGAGATCAGATGGTTTTCAATCTGCCCCATGATCGGGATAAAAGATTGGATGACTG
CG
Found at i:11269325 original size:119 final size:120
Alignment explanation
Indices: 11268779--11269365 Score: 580
Period size: 119 Copynumber: 4.9 Consensus size: 120
11268769 TGGGTTGTGG
* * * *
11268779 TTTCAATCTACCCCATGATTGGGGTAAGAGATTGGATGGTTGTGATCTGCCTCATGATCGGGGTA
1 TTTCAATCTACCCCATGATCGGGGTAAGAGATTGGATGGTTGCGATCTACCTCATGATCGGAGTA
* * * * *
11268844 AGAGATCAGATGGTTTTTAGTCTGCCCCATGATCGGGGTAAGAGATT-GGATGG-
66 AGAGATCGGATGGCTTTCAATCTGCCCCATGATCGGGGTAAGAGATTCAGATGGT
* * * ** * * * * *
11268897 CTGCGATCTACCCCATGATCGGGGTAAGAGATCAGATGTTTTTCTATCTGCCCCATGATCGG-GA
1 TTTCAATCTACCCCATGATCGGGGTAAGAGATTGGATG-GTTGCGATCTACCTCATGATCGGAG-
* * * * *** * *
11268961 TAAGAGATTGGATGAC-TGCGATCTGCCCCATGATCTACGTAAGAGA-TCGGATGAT
64 TAAGAGATCGGATGGCTTTCAATCTGCCCCATGATCGGGGTAAGAGATTCAGATGGT
* * * * * *
11269016 TTTTAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGTTTTCAATCTACCTCATGATTGGGGT
1 TTTCAATCTACCCCATGATCGGGGTAAGAGATTGGATGG-TTGCGATCTACCTCATGATCGGAGT
* * * * *
11269081 AAGAGATTGGATGG-TTGCGATCTGCCCCATAATCGAGGTAAGAGA-TCAGATGGT
65 AAGAGATCGGATGGCTTTCAATCTGCCCCATGATCGGGGTAAGAGATTCAGATGGT
* * * *
11269135 TTTCAATCTGCCCCATGATTGAGGTAAAAGATTGGATGGTTGCGATCTACCTCATGATC-GAGGT
1 TTTCAATCTACCCCATGATCGGGGTAAGAGATTGGATGGTTGCGATCTACCTCATGATCGGA-GT
*
11269199 AAGAGATCGGATGGCTTTCAATCTGCCTCATGATCGGGGTAAGAGATTC-GATGGT
65 AAGAGATCGGATGGCTTTCAATCTGCCCCATGATCGGGGTAAGAGATTCAGATGGT
** * *
11269254 TTTCAATCTACCTTATGATCGGGGTAAGTGATTGGATGGTTGCGATCTACCCCATGATCGGAGTA
1 TTTCAATCTACCCCATGATCGGGGTAAGAGATTGGATGGTTGCGATCTACCTCATGATCGGAGTA
* * * * ** *
11269319 AAAGATCGTATGGTTTTTAATCTGCATCATAATCGGGGTAAGAGATT
66 AGAGATCGGATGGCTTTCAATCTGCCCCATGATCGGGGTAAGAGATT
11269366 GGATTTGATG
Statistics
Matches: 389, Mismatches: 69, Indels: 21
0.81 0.14 0.04
Matches are distributed among these distances:
117 2 0.01
118 93 0.24
119 289 0.74
120 5 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (120 bp):
TTTCAATCTACCCCATGATCGGGGTAAGAGATTGGATGGTTGCGATCTACCTCATGATCGGAGTA
AGAGATCGGATGGCTTTCAATCTGCCCCATGATCGGGGTAAGAGATTCAGATGGT
Found at i:11269682 original size:99 final size:99
Alignment explanation
Indices: 11269498--11269746 Score: 329
Period size: 99 Copynumber: 2.5 Consensus size: 99
11269488 ATCTTTCTCG
*
11269498 TCATGCTTCTAAGGTATCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTTATATCTTTATGGTA
1 TCAT-CTTCTAAGGTATCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTTATATCTTTATGGCA
*
11269563 CCGAATTCGTCATTGTGGCCTCAATCATTCCCATC
65 CCGAATTCGTCATTGCGGCCTCAATCATTCCCATC
* * ** * **
11269598 TCATCTTCTAAGGTACCGAGTTCGTCATTGCGGCCTCAACCTTTCCCTTTATATCTTTATGGCGT
1 TCATCTTCTAAGGTATCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTTATATCTTTATGGCAC
* * * * *
11269663 CGGATTTG-CTGTTGCGGCCTCAATCCTTTCCATC
66 CGAATTCGTC-ATTGCGGCCTCAATCATTCCCATC
* *
11269697 ACATCTTCTAAGGTATCGGGTTCACCGTTGCAGCCTCAACCTTTCCCTTT
1 TCATCTTCTAAGGTATCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTT
11269747 TTGTCTTCAT
Statistics
Matches: 127, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 1 0.01
99 122 0.96
100 4 0.03
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.36
Consensus pattern (99 bp):
TCATCTTCTAAGGTATCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTTATATCTTTATGGCAC
CGAATTCGTCATTGCGGCCTCAATCATTCCCATC
Found at i:11269733 original size:50 final size:49
Alignment explanation
Indices: 11269503--11269742 Score: 169
Period size: 49 Copynumber: 4.9 Consensus size: 49
11269493 TCTCGTCATG
* * * *
11269503 CTTCTAAGGTATCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTTATAT
1 CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTT-CCATCACAT
* * ** * * * * * *
11269553 CTT-TATGGTACCGAATTCGTCATTGTGGCCTCAATCATTCCCATCTCAT
1 CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAA-CCTTTCCATCACAT
* * * * * * *
11269602 CTTCTAAGGTACCGAGTTCGTCATTGCGGCCTCAACCTTTCCCTTTATAT
1 CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTT-CCATCACAT
* ** * * *
11269652 CTT-TATGGCGTCGGATTTGCTGTTGCGGCCTCAATCCTTTCCATCACAT
1 CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAA-CCTTTCCATCACAT
* *
11269701 CTTCTAAGGTATCGGGTTCACCGTTGCAGCCTCAACCTTTCC
1 CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCC
11269743 CTTTTTGTCT
Statistics
Matches: 141, Mismatches: 44, Indels: 11
0.72 0.22 0.06
Matches are distributed among these distances:
49 71 0.50
50 70 0.50
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.35
Consensus pattern (49 bp):
CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCATCACAT
Found at i:11269754 original size:50 final size:50
Alignment explanation
Indices: 11269503--11269746 Score: 199
Period size: 50 Copynumber: 4.9 Consensus size: 50
11269493 TCTCGTCATG
*
11269503 CTTCTAAGGTATCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTTATAT
1 CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTATAT
* * ** * * * * * * *
11269553 CTT-TATGGTACCGAATTCGTCATTGTGGCCTCAATCATTCCCATCT-CAT
1 CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCC-TTTATAT
* * * *
11269602 CTTCTAAGGTACCGAGTTCGTCATTGCGGCCTCAACCTTTCCCTTTATAT
1 CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTATAT
* ** * * * * * *
11269652 CTT-TATGGCGTCGGATTTGCTGTTGCGGCCTCAATCCTTT-CCATCACAT
1 CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAA-CCTTTCCCTTTATAT
* *
11269701 CTTCTAAGGTATCGGGTTCACCGTTGCAGCCTCAACCTTTCCCTTT
1 CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTT
11269747 TTGTCTTCAT
Statistics
Matches: 146, Mismatches: 42, Indels: 12
0.73 0.21 0.06
Matches are distributed among these distances:
49 71 0.49
50 75 0.51
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.36
Consensus pattern (50 bp):
CTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTATAT
Found at i:11270718 original size:16 final size:17
Alignment explanation
Indices: 11270697--11270733 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
11270687 CAAACTCTCA
11270697 TTTTTCTTTTTT-CTTT
1 TTTTTCTTTTTTCCTTT
11270713 TTTTTCTTTTTTCCTTT
1 TTTTTCTTTTTTCCTTT
11270730 TTTT
1 TTTT
11270734 ATTCATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (17 bp):
TTTTTCTTTTTTCCTTT
Found at i:11273826 original size:13 final size:13
Alignment explanation
Indices: 11273808--11273833 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11273798 ACGATTAGTA
11273808 CGGGCATAAAACT
1 CGGGCATAAAACT
11273821 CGGGCATAAAACT
1 CGGGCATAAAACT
11273834 AGAAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (13 bp):
CGGGCATAAAACT
Found at i:11276833 original size:67 final size:65
Alignment explanation
Indices: 11276749--11276896 Score: 199
Period size: 67 Copynumber: 2.3 Consensus size: 65
11276739 ATGTACGACT
* * * * * * * *
11276749 TATATATAAAACT-AAAAAATGAAATCAAGATGTATGTTTATATATATATATCTGTACATGTGTA
1 TATATAAAAAAATAAAAAAATAAAATCAAAATGTATATCTATATATATATATATATACATGTGTA
11276813 TATATAAAAATAAATAAAAAAATAAAATCAAAATGTATATCTATATATATATATATATACATGTG
1 TATAT-AAAA-AAATAAAAAAATAAAATCAAAATGTATATCTATATATATATATATATACATGTG
11276878 TA
64 TA
11276880 TATATAAAAAAATAAAA
1 TATATAAAAAAATAAAA
11276897 CAAACAACAA
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
64 5 0.07
65 11 0.15
66 7 0.10
67 50 0.68
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (65 bp):
TATATAAAAAAATAAAAAAATAAAATCAAAATGTATATCTATATATATATATATATACATGTGTA
Found at i:11280112 original size:41 final size:38
Alignment explanation
Indices: 11280012--11280115 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 38
11280002 TTCGAAGCAA
* *
11280012 TAAAGTGACACCCAGTGTCTCATCG-GCCTAGCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
* ** ** * *
11280049 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
11280087 TAAAATAATGACACCCAGTGTCTCATCGA
1 T--AA-AATGACACCCAGTGTCTCATCGA
11280116 CTCAAGGTCG
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
37 21 0.41
38 10 0.20
40 2 0.04
41 18 0.35
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (38 bp):
TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
Found at i:11280241 original size:18 final size:18
Alignment explanation
Indices: 11280218--11280254 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
11280208 ACAATTCATA
11280218 TCACTTTCAATTCCAATT
1 TCACTTTCAATTCCAATT
* *
11280236 TCACTTTCACTTTCAATT
1 TCACTTTCAATTCCAATT
11280254 T
1 T
11280255 TGATCACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (18 bp):
TCACTTTCAATTCCAATT
Found at i:11280584 original size:17 final size:18
Alignment explanation
Indices: 11280550--11280585 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
11280540 TGAATTTCTA
11280550 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
11280568 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
11280585 T
1 T
11280586 AACTCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:11285998 original size:35 final size:35
Alignment explanation
Indices: 11285952--11286019 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
11285942 TCGCATTCTA
11285952 CAACAAGAGAGTAGTTAGGTTATACGCTATACCCC
1 CAACAAGAGAGTAGTTAGGTTATACGCTATACCCC
*
11285987 CAACAAGAGAGTAGTTGGGTTATACGCTATACC
1 CAACAAGAGAGTAGTTAGGTTATACGCTATACC
11286020 TCCAGAGAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.24
Consensus pattern (35 bp):
CAACAAGAGAGTAGTTAGGTTATACGCTATACCCC
Found at i:11300055 original size:16 final size:16
Alignment explanation
Indices: 11300034--11300064 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11300024 ATTTTATTCA
*
11300034 ATTTCTTCCGTCGATG
1 ATTTCTTCCATCGATG
11300050 ATTTCTTCCATCGAT
1 ATTTCTTCCATCGAT
11300065 TTCAATATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.26, G:0.13, T:0.45
Consensus pattern (16 bp):
ATTTCTTCCATCGATG
Found at i:11302142 original size:23 final size:23
Alignment explanation
Indices: 11302099--11302142 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
11302089 ATATTTTAAT
* *
11302099 TTGTTATTGCTTTTTTTTATTGA
1 TTGTTATTGCTTTTATATATTGA
11302122 TTGTTATTGCTTTTATATATT
1 TTGTTATTGCTTTTATATATT
11302143 ACAATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.16, C:0.05, G:0.11, T:0.68
Consensus pattern (23 bp):
TTGTTATTGCTTTTATATATTGA
Found at i:11303278 original size:111 final size:113
Alignment explanation
Indices: 11303157--11303396 Score: 299
Period size: 115 Copynumber: 2.1 Consensus size: 113
11303147 TTTGGTCCTA
* *
11303157 TTTCTAGCTTTGTTCGCTATTTCCCGTGCTTTGCCTTTCTTTGT-C-T-AAGTCATCATACGCAA
1 TTTCTAGCTTTGTCCGCTATTTCCCGTGCTTTGCCTTT-TTTGTCCATCAAATCATCATACGCAA
* * * *
11303219 -TCTATTCTGAGTCGTTTACTACTTTGTTGACCAAACTCTTTTGGTCTCG
65 TTC-ATTCTAAATCGTTGACTACTCTGTTGACCAAACTCTTTTGGTCTCG
* ** **
11303268 TTTCTAGCTTTGTCCTCTATTTTTCGTGCTTTGCCTTTTTTGTCCAAGTCAAATCATCATACTTA
1 TTTCTAGCTTTGTCCGCTATTTCCCGTGCTTTGCCTTTTTTGTCC-A-TCAAATCATCATACGCA
* *
11303333 ATTCATTCTAAATCGTTGGCTACTCTGTTGACCAAACTCTTTTGGTCTTG
64 ATTCATTCTAAATCGTTGACTACTCTGTTGACCAAACTCTTTTGGTCTCG
11303383 TTTCTAGCTTTGTC
1 TTTCTAGCTTTGTC
11303397 ATCTGTTTCA
Statistics
Matches: 110, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
110 5 0.05
111 35 0.32
114 1 0.01
115 67 0.61
116 2 0.02
ACGTcount: A:0.16, C:0.23, G:0.14, T:0.46
Consensus pattern (113 bp):
TTTCTAGCTTTGTCCGCTATTTCCCGTGCTTTGCCTTTTTTGTCCATCAAATCATCATACGCAAT
TCATTCTAAATCGTTGACTACTCTGTTGACCAAACTCTTTTGGTCTCG
Found at i:11307815 original size:115 final size:114
Alignment explanation
Indices: 11307623--11308000 Score: 447
Period size: 116 Copynumber: 3.3 Consensus size: 114
11307613 TTGGTCCTGG
* * * * *
11307623 TTCTAGCTTTGTCCTCTGTTTCCCGTGCTTTGCCTTCCATTGTCCAAGTCGATTCATCATACACA
1 TTCTAGCTTTGTCCTCTATTTCCTGTGCTTTGCCTTTCTTTGTCCAAGTTGATTCATCATACACA
* * *
11307688 ATTCATTCTGAGTCGTTGACTCCTCTACTGACCAAACTC-TTTGGTCCTTT
66 ATCCATTTTGAGTCGTTGACTACTCTA-TGACCAAACTCTTTTGGT-CTTT
* * * * *
11307738 TTCAAGCTTTGTCCTCTGTTTCCTATGCTTTGCCTTTCTTTGCCCAAGTTGATTCATCATGCACA
1 TTCTAGCTTTGTCCTCTATTTCCTGTGCTTTGCCTTTCTTTGTCCAAGTTGATTCATCATACACA
*
11307803 ATCCATTTTGAGTCGTTGACTACTCTATGGACCAAACTCTTTTGGTCTCCT
66 ATCCATTTTGAGTCGTTGACTACTCTAT-GACCAAACTCTTTTGGTCT-TT
* * * * * *
11307854 TTCTAGCATTGTCCTCTATTT-TTCGTGCTTTTCCTTTCTTTGTCCAAGTTAAGTCATCATACTC
1 TTCTAGCTTTGTCCTCTATTTCCT-GTGCTTTGCCTTTCTTTGTCCAAGTTGATTCATCATACAC
* *
11307918 AATCCATTTTAAGTCGTTGACTACTCTATTGGCCAAACTCTTTTGGTCTTGT
65 AATCCATTTTGAGTCGTTGACTACTCTA-TGACCAAACTCTTTTGGTCTT-T
* * *
11307970 TTTTAGCTTTGTCTTCTATTTCC-CTGCTTTG
1 TTCTAGCTTTGTCCTCTATTTCCTGTGCTTTG
11308001 GCTATTTGTT
Statistics
Matches: 224, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
114 1 0.00
115 100 0.45
116 122 0.54
117 1 0.00
ACGTcount: A:0.16, C:0.26, G:0.14, T:0.44
Consensus pattern (114 bp):
TTCTAGCTTTGTCCTCTATTTCCTGTGCTTTGCCTTTCTTTGTCCAAGTTGATTCATCATACACA
ATCCATTTTGAGTCGTTGACTACTCTATGACCAAACTCTTTTGGTCTTT
Found at i:11308788 original size:5 final size:5
Alignment explanation
Indices: 11308778--11308819 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
11308768 CATAATTAAT
11308778 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TC
1 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TC
11308820 TTTCCTTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (5 bp):
TCATA
Found at i:11309661 original size:49 final size:49
Alignment explanation
Indices: 11309583--11310057 Score: 315
Period size: 49 Copynumber: 9.7 Consensus size: 49
11309573 TAGGTTTGTC
*
11309583 GTTGCAGCCTC-ACCTTTCCCTTCATATCTTCATGGTACCGGATTCGCT
1 GTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCGGATTCGCT
* ** * ** * *
11309631 GTTGCGGCCTCAATCC-TTCCCTTCACATCTTCTAAAGAATTGGGTTTG-T
1 GTTGCGGCCTCAA-CCTTTCCCTTCATATCTTC-ATGGTACCGGATTCGCT
* ** * *
11309680 CATTGCGGCCTCAACCTTTCCCTTCATATGC-TCATGGTATTGGGTTCGCC
1 -GTTGCGGCCTCAACCTTTCCCTTCATAT-CTTCATGGTACCGGATTCGCT
* *
11309730 GTTGCGAG-CTCAACCTTTCCCTTCATATCTTCATGGTACCGGGTTCGCC
1 GTTGCG-GCCTCAACCTTTCCCTTCATATCTTCATGGTACCGGATTCGCT
** * * * * *
11309779 GTTGTAGCCTCAACCTTT-CCTATCACATCTTCATAGTACCGAATTCACC
1 GTTGCGGCCTCAACCTTTCCCT-TCATATCTTCATGGTACCGGATTCGCT
* * * ** * **
11309828 ATTGCGGCCTCAATCC-TTCCTTTCACATCTTCTAAAGTACTAGG-TT-AAT
1 GTTGCGGCCTCAA-CCTTTCCCTTCATATCTTC-ATGGTAC-CGGATTCGCT
* * * *
11309877 CGTTGCGGCCTCGACCTTTCCCTTCATATCCTCATGGTACTGGGTTCGCT
1 -GTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCGGATTCGCT
* * * * *
11309927 TTTACGGCCTCAACCTTTCCCTTCATATCTTCATGATA-CTGAGTTC-AT
1 GTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCGGA-TTCGCT
** * * * * * *
11309975 CGTTATGGCATCAACCTTTCCCATCAAATCTTTTAAGGTACCGGATTCGCC
1 -GTTGCGGCCTCAACCTTTCCCTTCATATC-TTCATGGTACCGGATTCGCT
*
11310026 GTTGTGGCCTCAACCTTTCCCTTCATATCTTC
1 GTTGCGGCCTCAACCTTTCCCTTCATATCTTC
11310058 GTATTTCCTC
Statistics
Matches: 333, Mismatches: 70, Indels: 47
0.74 0.16 0.10
Matches are distributed among these distances:
48 19 0.06
49 202 0.61
50 107 0.32
51 5 0.02
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.35
Consensus pattern (49 bp):
GTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTACCGGATTCGCT
Found at i:11309881 original size:148 final size:148
Alignment explanation
Indices: 11309557--11310057 Score: 407
Period size: 148 Copynumber: 3.4 Consensus size: 148
11309547 TCTTTCCTGT
* * *
11309557 CATGTTTCTAAGGTGCTAGGTTTGTCGTTGC-AGCCTCACCTTTCCCTTCATATCTTCATGGTAC
1 CATGCTTCTAAGGTACTAGGTTAGTCGTTGCGAGCCTCACCTTTCCCTTCATATCTTCATGGTAC
* * ** * * ** ** ***
11309621 CGGATTCGCTGTTGCGGCCTCAATCCTTCCCTTCACATCTTCTAAAGAATTGGGTTTGTCATTGC
66 CGGGTTCGCCGTTGTAGCCTCAA-CCTTTCCTTCACATCTTC-ATAGAACCGAATTCACCATTGC
11309686 GGCCTCAACCTTTCCCTTCA
129 GGCCTCAACCTTTCCCTTCA
* * * * * *
11309706 TATGC-TC-ATGGTATTGGGTTCGCCGTTGCGAG-CTCAACCTTTCCCTTCATATCTTCATGGTA
1 CATGCTTCTAAGGTACTAGGTTAGTCGTTGCGAGCCTC-ACCTTTCCCTTCATATCTTCATGGTA
*
11309768 CCGGGTTCGCCGTTGTAGCCTCAACCTTTCCTATCACATCTTCATAGTACCGAATTCACCATTGC
65 CCGGGTTCGCCGTTGTAGCCTCAACCTTTCCT-TCACATCTTCATAGAACCGAATTCACCATTGC
*
11309833 GGCCTCAATCC-TTCCTTTCA
129 GGCCTCAA-CCTTTCCCTTCA
* * *
11309853 CAT-CTTCTAAAGTACTAGGTTAATCGTTGCG-GCCTCGACCTTTCCCTTCATATCCTCATGGTA
1 CATGCTTCTAAGGTACTAGGTTAGTCGTTGCGAGCCTC-ACCTTTCCCTTCATATCTTCATGGTA
* * * * * * *
11309916 CTGGGTTCG-C-TTTTACGGCCTCAACCTTTCCCTTCATATCTTCAT-GATACTGAGTTCATCGT
65 CCGGGTTCGCCGTTGTA--GCCTCAACCTTT-CCTTCACATCTTCATAGA-ACCGAATTCACCAT
** * *
11309978 TATGGCATCAACCTTTCCCATCA
126 TGCGGCCTCAACCTTTCCCTTCA
* * * * * *
11310001 AAT-CTTTTAAGGTAC-CGGATTCGCCGTTGTG-GCCTCAACCTTTCCCTTCATATCTTC
1 CATGCTTCTAAGGTACTAGG-TTAGTCGTTGCGAGCCTC-ACCTTTCCCTTCATATCTTC
11310058 GTATTTCCTC
Statistics
Matches: 283, Mismatches: 56, Indels: 27
0.77 0.15 0.07
Matches are distributed among these distances:
146 5 0.02
147 66 0.23
148 206 0.73
149 6 0.02
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.36
Consensus pattern (148 bp):
CATGCTTCTAAGGTACTAGGTTAGTCGTTGCGAGCCTCACCTTTCCCTTCATATCTTCATGGTAC
CGGGTTCGCCGTTGTAGCCTCAACCTTTCCTTCACATCTTCATAGAACCGAATTCACCATTGCGG
CCTCAACCTTTCCCTTCA
Found at i:11309941 original size:197 final size:197
Alignment explanation
Indices: 11309582--11310057 Score: 548
Period size: 197 Copynumber: 2.4 Consensus size: 197
11309572 CTAGGTTTGT
* * * * * **
11309582 CGTTGCAGCCTC-ACCTTTCCCT-TCATATCTTCATGGTACCGGATTCGCTGTTGCGGCCTCAAT
1 CGTTGTAGCCTCAACCTTT-CCTATCAAATCTTCATAGTACCGAATTCACCATTGCGGCCTCAAT
* * ** *
11309645 CCTTCCCTTCACATCTTCTAAAGAATTGGGTTTGTCATTGCGGCCTCAACCTTTCCCTTCATATG
65 CCTTCCCTTCACATCTTCTAAAGAACTAGGTTAATCATTGCGGCCTCAACCTTTCCCTTCATATC
* * * *
11309710 CTCATGGTATTGGGTTCGCCGTTGCGAGCTCAACCTTTCCCTTCATATCTTCATGGTACCGGGTT
130 CTCATGGTACTGGGTTCGCCGTTACGAGCTCAACCTTTCCCTTCATATCTTCATGATACCGAGTT
*
11309775 CGC
195 CAC
*
11309778 CGTTGTAGCCTCAACCTTTCCTATCACATCTTCATAGTACCGAATTCACCATTGCGGCCTCAATC
1 CGTTGTAGCCTCAACCTTTCCTATCAAATCTTCATAGTACCGAATTCACCATTGCGGCCTCAATC
* * * *
11309843 CTTCCTTTCACATCTTCTAAAGTACTAGGTTAATCGTTGCGGCCTCGACCTTTCCCTTCATATCC
66 CTTCCCTTCACATCTTCTAAAGAACTAGGTTAATCATTGCGGCCTCAACCTTTCCCTTCATATCC
** *
11309908 TCATGGTACTGGGTTCGCTTTTACG-GCCTCAACCTTTCCCTTCATATCTTCATGATACTGAGTT
131 TCATGGTACTGGGTTCGCCGTTACGAG-CTCAACCTTTCCCTTCATATCTTCATGATACCGAGTT
*
11309972 CAT
195 CAC
* * * * * * * * *
11309975 CGTTATGGCATCAACCTTTCCCATCAAATCTT-TTAAGGTACCGGATTCGCCGTTGTGGCCTCAA
1 CGTTGTAGCCTCAACCTTTCCTATCAAATCTTCAT-A-GTACCGAATTCACCATTGCGGCCTCAA
*
11310039 -CCTTTCCCTTCATATCTTC
64 TCC-TTCCCTTCACATCTTC
11310058 GTATTTCCTC
Statistics
Matches: 237, Mismatches: 37, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
196 16 0.07
197 184 0.78
198 37 0.16
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.35
Consensus pattern (197 bp):
CGTTGTAGCCTCAACCTTTCCTATCAAATCTTCATAGTACCGAATTCACCATTGCGGCCTCAATC
CTTCCCTTCACATCTTCTAAAGAACTAGGTTAATCATTGCGGCCTCAACCTTTCCCTTCATATCC
TCATGGTACTGGGTTCGCCGTTACGAGCTCAACCTTTCCCTTCATATCTTCATGATACCGAGTTC
AC
Found at i:11313748 original size:30 final size:29
Alignment explanation
Indices: 11313714--11313808 Score: 118
Period size: 29 Copynumber: 3.2 Consensus size: 29
11313704 AAAATATAAA
* *
11313714 TTTGGAAAATTTTGGGGGTTAAAATGTGTT
1 TTTGGAAAAGTTT-GAGGTTAAAATGTGTT
* *
11313744 TTTGGAAAAGTTTGAGGTCAAAATGTGAT
1 TTTGGAAAAGTTTGAGGTTAAAATGTGTT
*
11313773 TTTGGAAAAGTTTAGAAGTTAAAATGTGATT
1 TTTGGAAAAGTTT-GAGGTTAAAATGTG-TT
11313804 TTTGG
1 TTTGG
11313809 GTAAAATAGA
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
29 26 0.46
30 24 0.43
31 6 0.11
ACGTcount: A:0.32, C:0.01, G:0.27, T:0.40
Consensus pattern (29 bp):
TTTGGAAAAGTTTGAGGTTAAAATGTGTT
Found at i:11313775 original size:29 final size:30
Alignment explanation
Indices: 11313674--11313805 Score: 126
Period size: 30 Copynumber: 4.4 Consensus size: 30
11313664 AATTTTAGGA
* *
11313674 AAAATGTAATTTTGGGAAAA-TAT-GAGGGTT
1 AAAATGTGATTTT-GGAAAAGTTTAGA-GGTT
* * * * * *
11313704 AAAATATAAATTTGGAAAATTTTGGGGGTT
1 AAAATGTGATTTTGGAAAAGTTTAGAGGTT
* *
11313734 AAAATGTGTTTTTGGAAAAGTTT-GAGGTC
1 AAAATGTGATTTTGGAAAAGTTTAGAGGTT
*
11313763 AAAATGTGATTTTGGAAAAGTTTAGAAGTT
1 AAAATGTGATTTTGGAAAAGTTTAGAGGTT
11313793 AAAATGTGATTTT
1 AAAATGTGATTTT
11313806 TGGGTAAAAT
Statistics
Matches: 85, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
29 32 0.38
30 52 0.61
31 1 0.01
ACGTcount: A:0.38, C:0.01, G:0.24, T:0.37
Consensus pattern (30 bp):
AAAATGTGATTTTGGAAAAGTTTAGAGGTT
Found at i:11317810 original size:19 final size:19
Alignment explanation
Indices: 11317786--11317847 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
11317776 CAGAGCATTA
11317786 GCAGCGTTTATGAGAAAAC
1 GCAGCGTTTATGAGAAAAC
11317805 GCAGCGTTTATGAGAAAAC
1 GCAGCGTTTATGAGAAAAC
11317824 GCAGCGTTTATGCA-AAAAC
1 GCAGCGTTTATG-AGAAAAC
11317843 GCAGC
1 GCAGC
11317848 TAAAGGTCAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 41 0.98
20 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (19 bp):
GCAGCGTTTATGAGAAAAC
Found at i:11317957 original size:41 final size:41
Alignment explanation
Indices: 11317837--11317946 Score: 152
Period size: 41 Copynumber: 2.7 Consensus size: 41
11317827 GCGTTTATGC
*
11317837 AAAAACGCAGCTAAAGGTCAGAGCATTAGCGGCATTTA-CA
1 AAAAACGCCGCTAAAGGTCAGAGCATTAGCGGCATTTATCA
* * *
11317877 AGAAAACGTCGCTAAATGTCAGAGCATTAGCGGCATTTATTA
1 A-AAAACGCCGCTAAAGGTCAGAGCATTAGCGGCATTTATCA
11317919 AAAAACGCCGCTAAAGGT-ATGAGCATTA
1 AAAAACGCCGCTAAAGGTCA-GAGCATTA
11317947 ACGACGTTTA
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
40 2 0.03
41 57 0.93
42 2 0.03
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.21
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGGTCAGAGCATTAGCGGCATTTATCA
Found at i:11319728 original size:41 final size:41
Alignment explanation
Indices: 11319665--11319807 Score: 164
Period size: 41 Copynumber: 3.5 Consensus size: 41
11319655 AAAAAATTAG
* * **
11319665 AGGTTAAGCAATAGTGGTGTTTATGGGATAAACGCTGCAAA
1 AGGTAAAGCAATAGCGACGTTTATGGGATAAACGCTGCAAA
11319706 AGGTAAAGCAATAGCGACGTTTATGGGATAAACGCTGCAAA
1 AGGTAAAGCAATAGCGACGTTTATGGGATAAACGCTGCAAA
* *** *
11319747 AGGTAAAGCAATAG-TAGCGTTT-TTCCATAAACGTTGCAAA
1 AGGTAAAGCAATAGCGA-CGTTTATGGGATAAACGCTGCAAA
* *
11319787 AGGTAAATCAATAGCGGCGTT
1 AGGTAAAGCAATAGCGACGTT
11319808 AACGCCGCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
40 32 0.36
41 56 0.64
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.24
Consensus pattern (41 bp):
AGGTAAAGCAATAGCGACGTTTATGGGATAAACGCTGCAAA
Found at i:11322803 original size:22 final size:22
Alignment explanation
Indices: 11322752--11322830 Score: 83
Period size: 22 Copynumber: 3.7 Consensus size: 22
11322742 ACAATATTAG
* *
11322752 TTAATTAAATATTTAATTCA-AA
1 TTAATTAATTATTTAATT-ATAT
* *
11322774 ATATTTAATTATTTAATTATAT
1 TTAATTAATTATTTAATTATAT
11322796 TTAATTAATTATTT-ATT-TAT
1 TTAATTAATTATTTAATTATAT
*
11322816 TTAATTACTTATTTA
1 TTAATTAATTATTTA
11322831 TTAAAAAACA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
20 16 0.33
21 4 0.08
22 28 0.58
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (22 bp):
TTAATTAATTATTTAATTATAT
Found at i:11322814 original size:16 final size:16
Alignment explanation
Indices: 11322775--11322834 Score: 68
Period size: 16 Copynumber: 3.7 Consensus size: 16
11322765 TAATTCAAAA
*
11322775 TATTTAATTATTTAATT
1 TATTTAATTAATT-ATT
11322792 ATATTTAATTAATTATT
1 -TATTTAATTAATTATT
* *
11322809 TATTTATTTAATTACT
1 TATTTAATTAATTATT
11322825 TATTT-ATTAA
1 TATTTAATTAA
11322835 AAAACAACCA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
15 4 0.11
16 19 0.50
17 3 0.08
18 12 0.32
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTTAATTAATTATT
Found at i:11322831 original size:4 final size:4
Alignment explanation
Indices: 11322775--11322832 Score: 53
Period size: 4 Copynumber: 14.0 Consensus size: 4
11322765 TAATTCAAAA
* * * * *
11322775 TATT TAAT TATT TAATT ATATT TAAT TAAT TATT TATT TATT TAAT TACT
1 TATT TATT TATT T-ATT -TATT TATT TATT TATT TATT TATT TATT TATT
11322825 TATT TATT
1 TATT TATT
11322833 AAAAAACAAC
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
4 38 0.84
5 6 0.13
6 1 0.02
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (4 bp):
TATT
Found at i:11322861 original size:8 final size:8
Alignment explanation
Indices: 11322848--11322883 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
11322838 ACAACCAAAA
11322848 TATTTAAT
1 TATTTAAT
11322856 TATTTAAT
1 TATTTAAT
11322864 TATTTAAT
1 TATTTAAT
*
11322872 TAGTTAAT
1 TATTTAAT
11322880 TATT
1 TATT
11322884 AAAATCAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (8 bp):
TATTTAAT
Found at i:11322928 original size:56 final size:54
Alignment explanation
Indices: 11322792--11323077 Score: 263
Period size: 56 Copynumber: 5.6 Consensus size: 54
11322782 TTATTTAATT
* * * *
11322792 ATATTTAATTAATTATTTATTTATTTAATTACTTATTTATTAAAAAACAACCAAA
1 ATATTTAATTAA-TATTTAATTATTTAATTAGTTATTTATTAAAAATCAACCCAA
*
11322847 ATATTTAA-T--TATTTAATTATTTAATTAGTTAATTATT-AAAATCAACCCAA
1 ATATTTAATTAATATTTAATTATTTAATTAGTTATTTATTAAAAATCAACCCAA
* *
11322897 ATATTTAATTCAAAATATTTAATTATTTAATTAGCTATTTATTAAAAAT-AATCC--
1 ATATTTAATT---AATATTTAATTATTTAATTAGTTATTTATTAAAAATCAACCCAA
*
11322951 -------A--AATATTTAATTATTTAATTAGTTAATTATT-AAAATCAACCCAA
1 ATATTTAATTAATATTTAATTATTTAATTAGTTATTTATTAAAAATCAACCCAA
* *
11322995 ATATTTAATTCAAAATATTTAATTATTTAATTAGCTATTTATTAAAAAT-AATCCAA
1 ATATTTAATT---AATATTTAATTATTTAATTAGTTATTTATTAAAAATCAACCCAA
*
11323051 ATATTTAA-T--TATTTAATTAGTTAATTA
1 ATATTTAATTAATATTTAATTATTTAATTA
11323078 TTAAAAAGAA
Statistics
Matches: 193, Mismatches: 15, Indels: 51
0.75 0.06 0.20
Matches are distributed among these distances:
41 5 0.03
42 32 0.17
47 1 0.01
50 36 0.19
51 27 0.14
54 1 0.01
55 9 0.05
56 72 0.37
57 10 0.05
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.46
Consensus pattern (54 bp):
ATATTTAATTAATATTTAATTATTTAATTAGTTATTTATTAAAAATCAACCCAA
Found at i:11322959 original size:42 final size:41
Alignment explanation
Indices: 11322909--11323004 Score: 147
Period size: 42 Copynumber: 2.3 Consensus size: 41
11322899 ATTTAATTCA
* * *
11322909 AAATATTTAATTATTTAATTAGCTATTTATTAAAAATAATCC
1 AAATATTTAATTATTTAATTAGTTAATTATT-AAAATAACCC
11322951 AAATATTTAATTATTTAATTAGTTAATTATTAAAATCAACCC
1 AAATATTTAATTATTTAATTAGTTAATTATTAAAAT-AACCC
11322993 AAATATTTAATT
1 AAATATTTAATT
11323005 CAAAATATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
41 5 0.10
42 45 0.90
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (41 bp):
AAATATTTAATTATTTAATTAGTTAATTATTAAAATAACCC
Found at i:11322968 original size:98 final size:98
Alignment explanation
Indices: 11322856--11323102 Score: 476
Period size: 98 Copynumber: 2.5 Consensus size: 98
11322846 AATATTTAAT
11322856 TATTTAATTATTTAATTAGTTAATTATTAAAATCAACCCAAATATTTAATTCAAAATATTTAATT
1 TATTTAATTATTTAATTAGTTAATTATTAAAATCAACCCAAATATTTAATTCAAAATATTTAATT
11322921 ATTTAATTAGCTATTTATTAAAAATAATCCAAA
66 ATTTAATTAGCTATTTATTAAAAATAATCCAAA
11322954 TATTTAATTATTTAATTAGTTAATTATTAAAATCAACCCAAATATTTAATTCAAAATATTTAATT
1 TATTTAATTATTTAATTAGTTAATTATTAAAATCAACCCAAATATTTAATTCAAAATATTTAATT
11323019 ATTTAATTAGCTATTTATTAAAAATAATCCAAA
66 ATTTAATTAGCTATTTATTAAAAATAATCCAAA
**
11323052 TATTTAATTATTTAATTAGTTAATTATTAAAAAGAACCCAAATATTTAATT
1 TATTTAATTATTTAATTAGTTAATTATTAAAATCAACCCAAATATTTAATT
11323103 ATTAAAAACA
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 147 1.00
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (98 bp):
TATTTAATTATTTAATTAGTTAATTATTAAAATCAACCCAAATATTTAATTCAAAATATTTAATT
ATTTAATTAGCTATTTATTAAAAATAATCCAAA
Found at i:11323057 original size:42 final size:41
Alignment explanation
Indices: 11323007--11323233 Score: 206
Period size: 42 Copynumber: 5.3 Consensus size: 41
11322997 ATTTAATTCA
* * *
11323007 AAATATTTAATTATTTAATTAGCTATTTATTAAAAATAATCC
1 AAATATTTAATTATTTAATTAGTTAATTATT-AAAATAACCC
*
11323049 AAATATTTAATTATTTAATTAGTTAATTATTAAAAAGAACCC
1 AAATATTTAATTATTTAATTAGTTAATTATT-AAAATAACCC
* * ** * ***
11323091 AAATATTTAATTATTAAAAACAACCTAAATATTTAATTCAAAAT-ATTT
1 AAATATTTAATTATT-----TAA-TTAGTTAATT-ATT-AAAATAACCC
* *
11323139 AATTATTTAATTAGTTAATTAGTTAATTATTAAAATCAACCC
1 AAATATTTAATTATTTAATTAGTTAATTATTAAAAT-AACCC
11323181 -AATATTTAATTATTTAATTAGTTAATTATTAAAATCAACCC
1 AAATATTTAATTATTTAATTAGTTAATTATTAAAAT-AACCC
11323222 AAATATTTAATT
1 AAATATTTAATT
11323234 CAAATTATTT
Statistics
Matches: 149, Mismatches: 26, Indels: 20
0.76 0.13 0.10
Matches are distributed among these distances:
40 5 0.03
41 42 0.28
42 71 0.48
43 2 0.01
47 2 0.01
48 20 0.13
49 7 0.05
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.43
Consensus pattern (41 bp):
AAATATTTAATTATTTAATTAGTTAATTATTAAAATAACCC
Found at i:11323100 original size:26 final size:26
Alignment explanation
Indices: 11323071--11323128 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
11323061 ATTTAATTAG
*
11323071 TTAATTATTAAAAAGAACCCAAATAT
1 TTAATTATTAAAAACAACCCAAATAT
*
11323097 TTAATTATTAAAAACAACCTAAATAT
1 TTAATTATTAAAAACAACCCAAATAT
11323123 TTAATT
1 TTAATT
11323129 CAAAATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (26 bp):
TTAATTATTAAAAACAACCCAAATAT
Found at i:11323122 original size:124 final size:129
Alignment explanation
Indices: 11322973--11323233 Score: 399
Period size: 131 Copynumber: 2.0 Consensus size: 129
11322963 ATTTAATTAG
*
11322973 TTAATTATTAAAATCAACCCAAATATTTAATTCAAAATATTTAATTATTTAATTAGCT-A-T-TT
1 TTAATTATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTATTTAATTAGCTAATTATT
*
11323035 -ATTA-AAAAT-AATCCAAATATTTAATTATTTAATTAGTTAATTATTAAAAAGAACCCAAATAT
66 AATTATAAAATCAA-CCAAATATTTAATTATTTAATTAGTTAATTATTAAAAACAACCCAAATAT
* *
11323097 TTAATTATTAAAAACAACCTAAATATTTAATTCAAAATATTTAATTATTTAATTAGTTAATTAGT
1 TTAATTATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTATTTAATTAGCTAATTA-T
* *
11323162 TAATTATTAAAATCAACCCAATATTTAATTATTTAATTAGTTAATTATTAAAATCAACCCAAATA
65 TAATTA-TAAAATCAACCAAATATTTAATTATTTAATTAGTTAATTATTAAAAACAACCCAAATA
11323227 T
129 T
11323228 TTAATT
1 TTAATT
11323234 CAAATTATTT
Statistics
Matches: 123, Mismatches: 6, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
124 55 0.45
125 1 0.01
126 1 0.01
128 2 0.02
129 4 0.03
131 58 0.47
132 2 0.02
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (129 bp):
TTAATTATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTATTTAATTAGCTAATTATT
AATTATAAAATCAACCAAATATTTAATTATTTAATTAGTTAATTATTAAAAACAACCCAAATAT
Found at i:11323124 original size:90 final size:89
Alignment explanation
Indices: 11323030--11323194 Score: 242
Period size: 90 Copynumber: 1.8 Consensus size: 89
11323020 TTTAATTAGC
* *
11323030 TATTT-ATTAAAAATAATCCAAATATTTAATTATTTAATTAGTTAATTATTAAAAAGAACCCAAA
1 TATTTAATTAAAAAT-ATCCAAATATTTAATTAGTTAATTAGTTAATTATTAAAAACAACCC-AA
11323094 TATTTAATTATTAAAAACAACCTAAA
64 TATTTAATTATTAAAAACAACCTAAA
* ** * *
11323120 TATTTAATTCAAAATATTTAATTATTTAATTAGTTAATTAGTTAATTATTAAAATCAACCCAATA
1 TATTTAATTAAAAATATCCAAATATTTAATTAGTTAATTAGTTAATTATTAAAAACAACCCAATA
11323185 TTTAATTATT
66 TTTAATTATT
11323195 TAATTAGTTA
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
89 14 0.21
90 45 0.67
91 8 0.12
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.42
Consensus pattern (89 bp):
TATTTAATTAAAAATATCCAAATATTTAATTAGTTAATTAGTTAATTATTAAAAACAACCCAATA
TTTAATTATTAAAAACAACCTAAA
Found at i:11323147 original size:8 final size:8
Alignment explanation
Indices: 11323134--11323210 Score: 57
Period size: 8 Copynumber: 9.5 Consensus size: 8
11323124 TAATTCAAAA
11323134 TATTTAAT
1 TATTTAAT
11323142 TATTTAAT
1 TATTTAAT
*
11323150 TAGTTAAT
1 TATTTAAT
*
11323158 TAGTTAAT
1 TATTTAAT
*
11323166 TATTAAAAT
1 TATT-TAAT
* ***
11323175 CAACCCAA-
1 -TATTTAAT
11323183 TATTTAAT
1 TATTTAAT
11323191 TATTTAAT
1 TATTTAAT
*
11323199 TAGTTAAT
1 TATTTAAT
11323207 TATT
1 TATT
11323211 AAAATCAACC
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
7 3 0.06
8 44 0.83
9 5 0.09
10 1 0.02
ACGTcount: A:0.40, C:0.05, G:0.04, T:0.51
Consensus pattern (8 bp):
TATTTAAT
Found at i:11323220 original size:105 final size:106
Alignment explanation
Indices: 11323097--11323294 Score: 308
Period size: 105 Copynumber: 1.9 Consensus size: 106
11323087 ACCCAAATAT
* * *
11323097 TTAATTATTAAAAACAACCTAAATATTTAATTCAAAATATTTAATTATTTAATTAGTTAATTAGT
1 TTAATTATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTATTTAAATAGTTAATTACT
* *
11323162 TAATTATTAAAATCAAC-CCAATATTTAATTATTTAATTAG
66 TAATTATTAAAAACAACTCAAATATTTAATTATTTAATTAG
* * *
11323202 TTAATTATTAAAATCAACCCAAATATTTAATTCAAATTATTTAATTATTTAAATATTTAATTACT
1 TTAATTATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTATTTAAATAGTTAATTACT
*
11323267 TATTTATTAAAAACAACTCAAATATTTA
66 TAATTATTAAAAACAACTCAAATATTTA
11323295 TTTCAAAATA
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
105 74 0.89
106 9 0.11
ACGTcount: A:0.46, C:0.09, G:0.02, T:0.44
Consensus pattern (106 bp):
TTAATTATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTATTTAAATAGTTAATTACT
TAATTATTAAAAACAACTCAAATATTTAATTATTTAATTAG
Found at i:11323249 original size:8 final size:8
Alignment explanation
Indices: 11323236--11323274 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
11323226 ATTTAATTCA
11323236 AATTATTT
1 AATTATTT
11323244 AATTATTT
1 AATTATTT
*
11323252 AAATATTT
1 AATTATTT
*
11323260 AATTACTT
1 AATTATTT
*
11323268 ATTTATT
1 AATTATT
11323275 AAAAACAACT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (8 bp):
AATTATTT
Found at i:11323254 original size:41 final size:39
Alignment explanation
Indices: 11323142--11323255 Score: 149
Period size: 41 Copynumber: 2.8 Consensus size: 39
11323132 AATATTTAAT
11323142 TATTTAATTAGTTAATTAGTTAATTATTAAAATCAACCCAA
1 TATTTAATTA--TAATTAGTTAATTATTAAAATCAACCCAA
11323183 TATTTAATTATTTAATTAGTTAATTATTAAAATCAACCCAAA
1 TATTTAATTA--TAATTAGTTAATTATTAAAATCAACCC-AA
* *
11323225 TATTTAATTCA-AATTATTTAATTATTTAAAT
1 TATTTAATT-ATAATTAGTTAATTATTAAAAT
11323256 ATTTAATTAC
Statistics
Matches: 68, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
40 18 0.26
41 38 0.56
42 11 0.16
43 1 0.01
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.46
Consensus pattern (39 bp):
TATTTAATTATAATTAGTTAATTATTAAAATCAACCCAA
Found at i:11323259 original size:64 final size:64
Alignment explanation
Indices: 11323183--11323367 Score: 226
Period size: 64 Copynumber: 2.8 Consensus size: 64
11323173 ATCAACCCAA
* * * * *
11323183 TATTTAATTATTTAATTAGTTAATTATTAAAATCAACCCAAATATTTAATTCAAATTATTTAAT
1 TATTTAAATATTTAATTACTTAATTATTAAAAACAACACAAATATTTAATTCAAAATATTTAAT
* * *
11323247 TATTTAAATATTTAATTACTTATTTATTAAAAACAACTCAAATATTTATTTCAAAATATTTAAT
1 TATTTAAATATTTAATTACTTAATTATTAAAAACAACACAAATATTTAATTCAAAATATTTAAT
* *
11323311 TATTTAATTATATTTAATTAAATATTTAATTATTAAAAAGAACACAAATATTTAATT
1 TATTTAA--ATATTTAA-T---TACTTAATTATTAAAAACAACACAAATATTTAATT
11323368 ATTTGGTTAT
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
64 64 0.62
66 8 0.08
67 1 0.01
70 30 0.29
ACGTcount: A:0.46, C:0.06, G:0.01, T:0.46
Consensus pattern (64 bp):
TATTTAAATATTTAATTACTTAATTATTAAAAACAACACAAATATTTAATTCAAAATATTTAAT
Found at i:11323274 original size:16 final size:16
Alignment explanation
Indices: 11323186--11323274 Score: 56
Period size: 16 Copynumber: 5.6 Consensus size: 16
11323176 AACCCAATAT
*
11323186 TTAATTATTTAATTAG
1 TTAATTATTTAATTAC
* *
11323202 TTAATTATTAAAATCAAC
1 TTAATTATT-TAAT-TAC
** *
11323220 CCAAATATTTAATT-C
1 TTAATTATTTAATTAC
* *
11323235 -AAATTATTTAATTAT
1 TTAATTATTTAATTAC
*
11323250 TTAAATATTTAATTAC
1 TTAATTATTTAATTAC
*
11323266 TTATTTATT
1 TTAATTATT
11323275 AAAAACAACT
Statistics
Matches: 53, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
14 11 0.21
15 1 0.02
16 28 0.53
17 6 0.11
18 7 0.13
ACGTcount: A:0.42, C:0.07, G:0.01, T:0.51
Consensus pattern (16 bp):
TTAATTATTTAATTAC
Found at i:11323315 original size:18 final size:18
Alignment explanation
Indices: 11323292--11323330 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
11323282 ACTCAAATAT
11323292 TTATTTCAA-AATATTTAA
1 TTATTT-AATAATATTTAA
*
11323310 TTATTTAATTATATTTAA
1 TTATTTAATAATATTTAA
11323328 TTA
1 TTA
11323331 AATATTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTATTTAATAATATTTAA
Found at i:11341255 original size:42 final size:42
Alignment explanation
Indices: 11341181--11341264 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
11341171 AAATGAGTTG
* *
11341181 TTTATGAGTGTTATTTAGGAATAAAAAAATATTTGGGTTTAA
1 TTTATGAGTGTTATTTAAGAATAAAAAAATATTTGAGTTTAA
* **
11341223 TTTATGAGTGTT-TTTGAAGAATGAAATTATATTTGAGTTTAA
1 TTTATGAGTGTTATTT-AAGAATAAAAAAATATTTGAGTTTAA
11341265 AAATATTTGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
41 3 0.08
42 33 0.92
ACGTcount: A:0.36, C:0.00, G:0.19, T:0.45
Consensus pattern (42 bp):
TTTATGAGTGTTATTTAAGAATAAAAAAATATTTGAGTTTAA
Found at i:11341338 original size:58 final size:58
Alignment explanation
Indices: 11341205--11341341 Score: 231
Period size: 58 Copynumber: 2.4 Consensus size: 58
11341195 TTAGGAATAA
* *
11341205 AAAAATATTTGGGTTTAATTTATGAGTGTTTTTGAAGAATGAAATTATATTTGAGTTT
1 AAAAATATTTGGGTTTAGTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGAGTTT
11341263 AAAAATATTTGGGTTTAGTTTATGAGTGTTTTTGAAGAATAAAATTATATGTTG-GTTT
1 AAAAATATTTGGGTTTAGTTTATGAGTGTTTTTGAAGAATAAAATTATAT-TTGAGTTT
*
11341321 AAAAATATTTGTGTTTAGTTT
1 AAAAATATTTGGGTTTAGTTT
11341342 GTTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
58 72 0.96
59 3 0.04
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (58 bp):
AAAAATATTTGGGTTTAGTTTATGAGTGTTTTTGAAGAATAAAATTATATTTGAGTTT
Found at i:11341569 original size:9 final size:9
Alignment explanation
Indices: 11341555--11341580 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
11341545 TCGATTCGTT
11341555 TAACTCGAA
1 TAACTCGAA
11341564 TAACTCGAA
1 TAACTCGAA
11341573 TAACTCGA
1 TAACTCGA
11341581 TTCGAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.12, T:0.23
Consensus pattern (9 bp):
TAACTCGAA
Found at i:11351977 original size:21 final size:21
Alignment explanation
Indices: 11351948--11352023 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
11351938 GGAATTTTTA
*
11351948 GTATCGGTAGAAGTA-AGACTT
1 GTATCGGTAGAAG-AGACACTT
*
11351969 GTTTCGGTAGAAGAGACACTT
1 GTATCGGTAGAAGAGACACTT
** *
11351990 GTATCGGTAGAACTGTCACTT
1 GTATCGGTAGAAGAGACACTT
*
11352011 GTATCGATAGAAG
1 GTATCGGTAGAAG
11352024 TCTACAATAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 1 0.02
21 45 0.98
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (21 bp):
GTATCGGTAGAAGAGACACTT
Found at i:11352379 original size:30 final size:30
Alignment explanation
Indices: 11352339--11352410 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
11352329 GTGTGTTTGA
*
11352339 AGGTTAATCCTCCAGGTCGAGCT-CTACCAT
1 AGGTTAATCCTCCAAGTCGAGCTCCT-CCAT
* *
11352369 AGGTTGATCCTCCAAGTCGAGCTCCTTCAT
1 AGGTTAATCCTCCAAGTCGAGCTCCTCCAT
11352399 AGGTTAATCCTC
1 AGGTTAATCCTC
11352411 GGGTCAAGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 35 0.95
31 2 0.05
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (30 bp):
AGGTTAATCCTCCAAGTCGAGCTCCTCCAT
Found at i:11354082 original size:27 final size:27
Alignment explanation
Indices: 11354039--11354091 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
11354029 TTTCACATAA
** *
11354039 AATTTCATCATTTTATTTAGTATTTCC
1 AATTTCATCATCATATTTACTATTTCC
11354066 AATTTCATCATCATATTTACTATTTC
1 AATTTCATCATCATATTTACTATTTC
11354092 ACATTAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.02, T:0.53
Consensus pattern (27 bp):
AATTTCATCATCATATTTACTATTTCC
Found at i:11357714 original size:17 final size:17
Alignment explanation
Indices: 11357692--11357725 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
11357682 CTGAAATGAG
*
11357692 CATACCATTTTGGTAAA
1 CATACCATTTTCGTAAA
11357709 CATACCATTTTCGTAAA
1 CATACCATTTTCGTAAA
11357726 TAATCTCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (17 bp):
CATACCATTTTCGTAAA
Done.