Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 52 of 132
Found at i:14357062 original size:59 final size:57
Alignment explanation
Indices: 14356991--14357411 Score: 361
Period size: 59 Copynumber: 7.2 Consensus size: 57
14356981 TGCCCGAGGA
* *
14356991 AAAATGGTAATTTTTAGG-AAGTTTGAGGTCAAAAATTGAATTTTTGGACATTTGGGGGT
1 AAAATGGTAA-TTTTGGGAAAGTTTGAGGT-AAAAATGGAATTTTTGGA-ATTTGGGGGT
* * * * *
14357050 AAAATGGTAATTTTGGGAAAGTTTGATGTTAAAAATAGAATTTTTAGAAGTCTGAGGGT
1 AAAATGGTAATTTTGGGAAAGTTTGA-GGTAAAAATGGAATTTTTGGAA-TTTGGGGGT
* ** * * * *
14357109 AAAATAGTAATTTTAAGAAAATTTGGGGTAAAAATAGAATTTTTGGATGTTTGGGGGT
1 AAAATGGTAATTTTGGGAAAGTTTGAGGTAAAAATGGAATTTTTGGA-ATTTGGGGGT
* * * *
14357167 AAAATGGTGATTTTGGGAAAG-TTCAGGGTTAAAATGGAATTTTTGGAAGTTTAGGGGT
1 AAAATGGTAATTTTGGGAAAGTTTGA-GGTAAAAATGGAATTTTTGGAA-TTTGGGGGT
* * ** * ****
14357225 AAAAT-CTAATTTTGGGAAAGTTTGAGGTTAAAA-CAAATTTTTGGAAGTCCAAGGT
1 AAAATGGTAATTTTGGGAAAGTTTGAGGTAAAAATGGAATTTTTGGAATTTGGGGGT
* * * *
14357280 AAAATGGTAGTTTTTAGG-AAGTTT-AGGGTAAAAAATGGAATTTTTGGACATTTGAGGAT
1 AAAATGGTA-ATTTTGGGAAAGTTTGA-GGT-AAAAATGGAATTTTTGGA-ATTTGGGGGT
* *
14357339 AAAATGGTAATTTTGGGAAAG-TTCAGGGTCAAAAATGGAATTTTTGGGAATTTAGGGGT
1 AAAATGGTAATTTTGGGAAAGTTTGA-GGT-AAAAATGGAATTTTT-GGAATTTGGGGGT
14357398 AAAATGGTAATTTT
1 AAAATGGTAATTTT
14357412 TGTGAAGTTC
Statistics
Matches: 292, Mismatches: 54, Indels: 32
0.77 0.14 0.08
Matches are distributed among these distances:
55 10 0.03
56 22 0.08
57 33 0.11
58 102 0.35
59 120 0.41
60 5 0.02
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (57 bp):
AAAATGGTAATTTTGGGAAAGTTTGAGGTAAAAATGGAATTTTTGGAATTTGGGGGT
Found at i:14357409 original size:29 final size:29
Alignment explanation
Indices: 14356991--14357420 Score: 202
Period size: 29 Copynumber: 14.8 Consensus size: 29
14356981 TGCCCGAGGA
* *
14356991 AAAATGGTAATTTTTAGGAAGTTTGAGGT
1 AAAATGGTAATTTTTGGGAAGTTTGGGGT
*
14357020 CAAAAATTG-AATTTTT-GGACA-TTTGGGGGT
1 --AAAATGGTAATTTTTGGGA-AGTTT-GGGGT
* *
14357050 AAAATGGTAA-TTTTGGGAAAGTTTGATGTT
1 AAAATGGTAATTTTTGGG-AAGTTTG-GGGT
* * *
14357080 AAAAATAG-AATTTTT-AGAAGTCTGAGGGT
1 -AAAATGGTAATTTTTGGGAAGTTTG-GGGT
* ** * *
14357109 AAAATAGTAATTTTAAGAAAATTTGGGGT
1 AAAATGGTAATTTTTGGGAAGTTTGGGGT
* *
14357138 AAAAATAG-AATTTTT-GGATGTTTGGGGGT
1 -AAAATGGTAATTTTTGGGAAGTTT-GGGGT
* * *
14357167 AAAATGGTGA-TTTTGGGAAAGTTCAGGGTT
1 AAAATGGTAATTTTTGGG-AAGTT-TGGGGT
14357197 AAAATGG-AATTTTT-GGAAGTTTAGGGGT
1 AAAATGGTAATTTTTGGGAAGTTT-GGGGT
* *
14357225 AAAAT-CTAA-TTTTGGGAAAGTTTGAGGTT
1 AAAATGGTAATTTTTGGG-AAGTTTG-GGGT
** ****
14357254 AAAA--CAAATTTTT-GGAAGTCCAAGGT
1 AAAATGGTAATTTTTGGGAAGTTTGGGGT
* * *
14357280 AAAATGGTAGTTTTTAGGAAGTTTAGGGT
1 AAAATGGTAATTTTTGGGAAGTTTGGGGT
*
14357309 AAAAAATGG-AATTTTT-GGACA-TTTGAGGAT
1 --AAAATGGTAATTTTTGGGA-AGTTTG-GGGT
**
14357339 AAAATGGTAA-TTTTGGGAAAGTTCAGGGT
1 AAAATGGTAATTTTTGGG-AAGTTTGGGGT
14357368 CAAAAATGG-AATTTTTGGGAA-TTTAGGGGT
1 --AAAATGGTAATTTTTGGGAAGTTT-GGGGT
*
14357398 AAAATGGTAATTTTTGTGAAGTT
1 AAAATGGTAATTTTTGGGAAGTT
14357421 CATGATAATG
Statistics
Matches: 308, Mismatches: 50, Indels: 83
0.70 0.11 0.19
Matches are distributed among these distances:
26 6 0.02
27 8 0.03
28 80 0.26
29 102 0.33
30 75 0.24
31 37 0.12
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (29 bp):
AAAATGGTAATTTTTGGGAAGTTTGGGGT
Found at i:14360186 original size:209 final size:209
Alignment explanation
Indices: 14359813--14360246 Score: 604
Period size: 209 Copynumber: 2.1 Consensus size: 209
14359803 TTTCAATCCG
* *
14359813 CTTCTCAGTATCTCATCAGGAAGATAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
1 CTTCTCAGTATCTCATCAAGAAGATAACCATTTTATTGCTTCGACCTACTTCTCAATATCTCATC
* *
14359878 AGGAAGCTGGGGTTCGAAGATTCGCTTACTTTTAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
66 AAGAAGCTGGGGTTCGAAGATTCGCTCACTTTTAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
**
14359943 GTATCTCATCAGGAAGATGATAGCATCACTTGTTTCAATCTGCTTCTCCGTATCTCATCAGAAAG
131 GTATCTCATCAGGAAGATGATAGCATCACTTGTTTCAATCCACTTCTCCGTATCTCATCAGAAAG
* *
14360008 GC-GAATTTGGTCCA
196 ACAG-ATCTGGTCCA
*
14360022 CTTCTCAGTATCTCATCAAGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCAATATCTCATC
1 CTTCTCAGTATCTCATCAAGAAGATAACCATTTTATTGCTTCGACCTACTTCTCAATATCTCATC
* * *
14360087 AAGAAGTTGGGGTTCGAAGATTTGCTCA-TTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTT
66 AAGAAGCTGGGGTTCGAAGATTCGCTCACTTTT-AGCTTGGCTTCATTGATTTGGCCTTCTTCTC
* * ** * ** * * *
14360151 AGTATCTTATTAGGAAGATGACT-GTTTCGCTTGTTTTGATCCACTTCTCTGTGTCTCATCAGGA
130 AGTATCTCATCAGGAAGATGA-TAGCATCACTTGTTTCAATCCACTTCTCCGTATCTCATCAGAA
*
14360215 AGACAGATCTGGTTCA
194 AGACAGATCTGGTCCA
*
14360231 CTTCTCTGTATCTCAT
1 CTTCTCAGTATCTCAT
14360247 TAGGAAGGTA
Statistics
Matches: 198, Mismatches: 24, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
208 4 0.02
209 192 0.97
210 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.38
Consensus pattern (209 bp):
CTTCTCAGTATCTCATCAAGAAGATAACCATTTTATTGCTTCGACCTACTTCTCAATATCTCATC
AAGAAGCTGGGGTTCGAAGATTCGCTCACTTTTAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
GTATCTCATCAGGAAGATGATAGCATCACTTGTTTCAATCCACTTCTCCGTATCTCATCAGAAAG
ACAGATCTGGTCCA
Found at i:14368500 original size:23 final size:23
Alignment explanation
Indices: 14368461--14368505 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14368451 AATATGCAAA
*
14368461 TATGCAATGCGAAAAAATGCATG
1 TATGCAATGCGAAAAAAGGCATG
*
14368484 TATGTAATGC-AAGAAAAGGCAT
1 TATGCAATGCGAA-AAAAGGCAT
14368506 TGATTTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (23 bp):
TATGCAATGCGAAAAAAGGCATG
Found at i:14370012 original size:13 final size:13
Alignment explanation
Indices: 14369994--14370018 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14369984 TACCACATCC
14369994 TCCACATGCCCTT
1 TCCACATGCCCTT
14370007 TCCACATGCCCT
1 TCCACATGCCCT
14370019 AATGCTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.08, T:0.28
Consensus pattern (13 bp):
TCCACATGCCCTT
Found at i:14372446 original size:59 final size:58
Alignment explanation
Indices: 14372381--14372908 Score: 301
Period size: 59 Copynumber: 9.3 Consensus size: 58
14372371 CCAGGGACAG
* *
14372381 AATGGTAATTTTTAGG-AAGTTCGAGGTTAAAAATGGAATTTTTGGACATTCAGGGTTAA
1 AATGGTAATTTTTGGGAAAGTT-GAGGTCAAAAATGGAATTTTTGGACATTCAGGG-TAA
* * * * *
14372440 AATGGTAA-TTTTGGGAAAGTTTA-GT---ACATGGAATTTTT-GAAAGTTTAAGGGTTA
1 AATGGTAATTTTTGGGAAAGTTGAGGTCAAAAATGGAATTTTTGGACA--TTCAGGGTAA
** * * * ** ** *
14372494 AATGGTAA-TTTTAAGTAAGTATGGGGTCAAGAATAAAATTTTTGGATGTTTGAGGGTAA
1 AATGGTAATTTTTGGGAAAGT-TGAGGTCAAAAATGGAATTTTTGGA-CATTCAGGGTAA
* * *
14372553 AATGATAA-TTTTGGGAAAGTTTAGGGTCAAAAATGGAATTTTTGGA-AGTTTAAGGGTAA
1 AATGGTAATTTTTGGGAAAGTTGA-GGTCAAAAATGGAATTTTTGGACA--TTCAGGGTAA
* * * *
14372612 AATGGTAATATTTGGG-AAGTTTG-GAGTAAAAAATGGAATTTTTAGACATTCGGGGGTAA
1 AATGGTAATTTTTGGGAAAG-TTGAG-GTCAAAAATGGAATTTTTGGACATTC-AGGGTAA
* *
14372671 AATGGTAA-TTTTGGGAAAGTTTG-GGTCAAAAATAGAATTTTTGGA-AGTCAGGGGGTAA
1 AATGGTAATTTTTGGGAAAG-TTGAGGTCAAAAATGGAATTTTTGGACATTCA--GGGTAA
* * *
14372729 AATGGTAATTTTT-GGCAAGTTCAAGGT-GAAAATGGAATTTTTGGACA-T-----T--
1 AATGGTAATTTTTGGGAAAGTT-GAGGTCAAAAATGGAATTTTTGGACATTCAGGGTAA
* *
14372778 --TGGTAA-TTATGGGAAAGTTTGAGGTCAAAAATGGAATTTTTGGAAATTC-GAGGTAA
1 AATGGTAATTTTTGGGAAAG-TTGAGGTCAAAAATGGAATTTTTGGACATTCAG-GGTAA
* * * * *
14372834 AATGGTAATTTTTGTG-AAGTTCGA-GTGCAATAATGTAAATTTTGGAAAGTTCAAGGGTCAA
1 AATGGTAATTTTTGGGAAAGTT-GAGGT-CAAAAATGGAATTTTTGGACA-TTC-AGGGT-AA
14372895 AAT-GTAATTTTTGG
1 AATGGTAATTTTTGG
14372909 AATTTTTAAG
Statistics
Matches: 366, Mismatches: 58, Indels: 89
0.71 0.11 0.17
Matches are distributed among these distances:
46 3 0.01
47 15 0.04
48 20 0.05
49 1 0.00
51 1 0.00
53 3 0.01
54 32 0.09
55 7 0.02
56 2 0.01
57 11 0.03
58 100 0.27
59 141 0.39
60 24 0.07
61 6 0.02
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.35
Consensus pattern (58 bp):
AATGGTAATTTTTGGGAAAGTTGAGGTCAAAAATGGAATTTTTGGACATTCAGGGTAA
Found at i:14372564 original size:29 final size:27
Alignment explanation
Indices: 14372385--14372773 Score: 148
Period size: 29 Copynumber: 13.4 Consensus size: 27
14372375 GGACAGAATG
* *
14372385 GTAATTTTTAGGAAGTTCGAGGTTAAAAAT
1 GTAATTTTT-GGAAGTT-TAGGGT-AAAAT
* *
14372415 GGAATTTTTGGACA-TTCAGGGTTAAAAT
1 GTAATTTTTGGA-AGTTTAGGG-TAAAAT
* *
14372443 GGTAATTTTGGGAAAGTTTA--GT-ACAT
1 -GTAATTTTTGG-AAGTTTAGGGTAAAAT
* * *
14372469 GGAATTTTTGAAAGTTTAAGGGTTAAAT
1 GTAATTTTTGGAAGTTT-AGGGTAAAAT
* * * *
14372497 GGTAATTTTAAGTAAGTATGGGGTCAAGAAT
1 -GTAATTTT-TGGAAGTTTAGGGT-AA-AAT
** *
14372528 AAAATTTTTGGATGTTTGAGGGTAAAAT
1 GTAATTTTTGGAAGTTT-AGGGTAAAAT
*
14372556 GATAATTTTGGGAAAGTTTAGGGTCAAAAAT
1 G-TAATTTTTGG-AAGTTTAGGGT--AAAAT
*
14372587 GGAATTTTTGGAAGTTTAAGGGTAAAAT
1 GTAATTTTTGGAAGTTT-AGGGTAAAAT
*
14372615 GGTAATATTTGGGAAGTTT-GGAGTAAAAAAT
1 -GTAAT-TTTTGGAAGTTTAGG-GT--AAAAT
* * **
14372646 GGAATTTTTAGACA-TTCGGGGGTAAAAT
1 GTAATTTTTGGA-AGTT-TAGGGTAAAAT
*
14372674 GGTAATTTTGGGAAAGTTT-GGGTCAAAAAT
1 -GTAATTTTTGG-AAGTTTAGGGT--AAAAT
*
14372704 AG-AATTTTTGGAAG-TCAGGGGGTAAAAT
1 -GTAATTTTTGGAAGTTTA--GGGTAAAAT
* *
14372732 GGTAATTTTTGGCAAGTTCAAGGTGAAAAT
1 -GTAATTTTTGG-AAGTTTAGGGT-AAAAT
*
14372762 GGAATTTTTGGA
1 GTAATTTTTGGA
14372774 CATTTGGTAA
Statistics
Matches: 274, Mismatches: 46, Indels: 80
0.69 0.12 0.20
Matches are distributed among these distances:
24 6 0.02
25 9 0.03
26 3 0.01
27 4 0.01
28 41 0.15
29 105 0.38
30 87 0.32
31 19 0.07
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.35
Consensus pattern (27 bp):
GTAATTTTTGGAAGTTTAGGGTAAAAT
Found at i:14372618 original size:118 final size:117
Alignment explanation
Indices: 14372381--14372740 Score: 378
Period size: 118 Copynumber: 3.1 Consensus size: 117
14372371 CCAGGGACAG
* * ** *
14372381 AATGGTAATTTTTAGGAAGT-TCGAGGTTAAAAATGGAATTTTTGGACATTC-AGGGTTAAAATG
1 AATGGTAA-TTTTAGGAAGTATGGA-GTAAAAAATAAAATTTTTAGACATTCGAGGG-TAAAATG
* * *
14372444 GTAATTTTGGGAAAGTTTA--GT---ACATGGAATTTTTGAAAGTTTAAGGGTTA
63 GTAATTTTGGGAAAGTTTAGGGTCAAAAATGGAATTTTTGGAAGTTTAAGGGTAA
* * * * * ** * *
14372494 AATGGTAATTTTAAGTAAGTATGGGGTCAAGAATAAAATTTTTGGATGTTTGAGGGTAAAATGAT
1 AATGGTAATTTT-AGGAAGTATGGAGTAAAAAATAAAATTTTTAGACATTCGAGGGTAAAATGGT
14372559 AATTTTGGGAAAGTTTAGGGTCAAAAATGGAATTTTTGGAAGTTTAAGGGTAA
65 AATTTTGGGAAAGTTTAGGGTCAAAAATGGAATTTTTGGAAGTTTAAGGGTAA
* * ** *
14372612 AATGGTAATATTTGGGAAGTTTGGAGTAAAAAATGGAATTTTTAGACATTCGGGGGTAAAATGGT
1 AATGGTAAT-TTTAGGAAGTATGGAGTAAAAAATAAAATTTTTAGACATTCGAGGGTAAAATGGT
* * *
14372677 AATTTTGGGAAAGTTT-GGGTCAAAAATAGAATTTTTGGAAG-TCAGGGGGTAA
65 AATTTTGGGAAAGTTTAGGGTCAAAAATGGAATTTTTGGAAGTTTA-AGGGTAA
14372729 AATGGTAATTTT
1 AATGGTAATTTT
14372741 TGGCAAGTTC
Statistics
Matches: 206, Mismatches: 31, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
112 4 0.02
113 58 0.28
114 6 0.03
115 2 0.01
116 5 0.02
117 39 0.19
118 89 0.43
119 3 0.01
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (117 bp):
AATGGTAATTTTAGGAAGTATGGAGTAAAAAATAAAATTTTTAGACATTCGAGGGTAAAATGGTA
ATTTTGGGAAAGTTTAGGGTCAAAAATGGAATTTTTGGAAGTTTAAGGGTAA
Found at i:14372796 original size:47 final size:48
Alignment explanation
Indices: 14372731--14372821 Score: 121
Period size: 47 Copynumber: 1.9 Consensus size: 48
14372721 GGGGGTAAAA
* * * *
14372731 TGGTAATTTTTGGCAAGTTCAAGGT-GAAAATGGAATTTTTGGACATT
1 TGGTAATTATGGGAAAGTTCAAGGTCAAAAATGGAATTTTTGGACATT
**
14372778 TGGTAATTATGGGAAAGTTTGAGGTCAAAAATGGAATTTTTGGA
1 TGGTAATTATGGGAAAGTTCAAGGTCAAAAATGGAATTTTTGGA
14372822 AATTCGAGGT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
47 20 0.54
48 17 0.46
ACGTcount: A:0.32, C:0.04, G:0.27, T:0.36
Consensus pattern (48 bp):
TGGTAATTATGGGAAAGTTCAAGGTCAAAAATGGAATTTTTGGACATT
Found at i:14372920 original size:30 final size:30
Alignment explanation
Indices: 14372800--14372949 Score: 121
Period size: 30 Copynumber: 5.0 Consensus size: 30
14372790 GAAAGTTTGA
* *
14372800 GGTCAAAAATGGAATTTTTGGAAA-TTCGA-
1 GGTC-AAAATGTAATTTTTGGAAAGTTCAAG
*
14372829 GGT-AAAATGGTAATTTTTGTG-AAGTTCGAG
1 GGTCAAAAT-GTAATTTTTG-GAAAGTTCAAG
* *
14372859 TG-CAATAATGTAAATTTTGGAAAGTTCAAG
1 GGTCAA-AATGTAATTTTTGGAAAGTTCAAG
** *
14372889 GGTCAAAATGTAATTTTTGGAATTTTTAAG
1 GGTCAAAATGTAATTTTTGGAAAGTTCAAG
* * * *
14372919 GGTCAAAATATGATTTTTAGACAGTTCAAG
1 GGTCAAAATGTAATTTTTGGAAAGTTCAAG
14372949 G
1 G
14372950 ACCTTCTAAG
Statistics
Matches: 97, Mismatches: 16, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
27 5 0.05
28 11 0.11
29 10 0.10
30 65 0.67
31 6 0.06
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.35
Consensus pattern (30 bp):
GGTCAAAATGTAATTTTTGGAAAGTTCAAG
Found at i:14373996 original size:3 final size:3
Alignment explanation
Indices: 14373988--14374046 Score: 64
Period size: 3 Copynumber: 19.7 Consensus size: 3
14373978 GACTGCCTTT
* * ** * *
14373988 TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA CTA TTA AGA ATA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14374036 TTA TTA TTA TT
1 TTA TTA TTA TT
14374047 GATACTGTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:14374243 original size:6 final size:6
Alignment explanation
Indices: 14374216--14374285 Score: 51
Period size: 6 Copynumber: 12.2 Consensus size: 6
14374206 GACTTTGTTT
* * *
14374216 ATTTAA ATTTAGA A--TAA TTTTAA ATTTAA ATATAA ATTTAA A-ATAA
1 ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
*
14374262 ATTT-A ATCTTAA A-ATAA ATTTAA A
1 ATTTAA AT-TTAA ATTTAA ATTTAA A
14374286 ATGGATTTAG
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
4 1 0.02
5 13 0.27
6 31 0.63
7 4 0.08
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (6 bp):
ATTTAA
Found at i:14374254 original size:29 final size:28
Alignment explanation
Indices: 14374219--14374287 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 28
14374209 TTTGTTTATT
* *
14374219 TAAATTTAGAATAATTTTAAAT-TTAAATA
1 TAAATTTAAAATAAATTT-AATCTTAAA-A
14374248 TAAATTTAAAATAAATTTAATCTTAAAA
1 TAAATTTAAAATAAATTTAATCTTAAAA
14374276 TAAATTTAAAAT
1 TAAATTTAAAAT
14374288 GGATTTAGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 16 0.43
29 21 0.57
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (28 bp):
TAAATTTAAAATAAATTTAATCTTAAAA
Found at i:14374255 original size:18 final size:17
Alignment explanation
Indices: 14374216--14374285 Score: 71
Period size: 17 Copynumber: 4.4 Consensus size: 17
14374206 GACTTTGTTT
*
14374216 ATTTAAATTTAGAATAA
1 ATTTAAATTTAAAATAA
*
14374233 TTTTAAATTT-AAAT--
1 ATTTAAATTTAAAATAA
14374247 A--TAAATTTAAAATAA
1 ATTTAAATTTAAAATAA
14374262 ATTT-AATCTTAAAATAA
1 ATTTAAAT-TTAAAATAA
14374279 ATTTAAA
1 ATTTAAA
14374286 ATGGATTTAG
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
12 7 0.16
13 4 0.09
15 1 0.02
16 6 0.14
17 23 0.53
18 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:14374287 original size:11 final size:12
Alignment explanation
Indices: 14374236--14374267 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
14374226 AGAATAATTT
14374236 TAAATTTAAATA
1 TAAATTTAAATA
14374248 TAAATTTAAA-A
1 TAAATTTAAATA
14374259 TAAATTTAA
1 TAAATTTAA
14374268 TCTTAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAATTTAAATA
Found at i:14375808 original size:6 final size:6
Alignment explanation
Indices: 14375788--14375843 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
14375778 ACGGAGCCCT
* * * **
14375788 TTTAAA TTT-AT TTTAAA TTTAGA TTT-AT TTTAAA TTGGAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
14375834 TTTAAA TTTA
1 TTTAAA TTTA
14375844 TTTTCATATT
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
5 7 0.18
6 31 0.82
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:14375813 original size:17 final size:17
Alignment explanation
Indices: 14375788--14375843 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
14375778 ACGGAGCCCT
14375788 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
14375805 TTTAGATTTATTTTAAA
1 TTTAAATTTATTTTAAA
** *
14375822 TTGGAATTTAAATTTAAA
1 TTTAAATTT-ATTTTAAA
14375840 TTTA
1 TTTA
14375844 TTTTCATATT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 22 0.71
18 9 0.29
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:14377851 original size:29 final size:29
Alignment explanation
Indices: 14377723--14377893 Score: 96
Period size: 29 Copynumber: 5.9 Consensus size: 29
14377713 TTTGGCCTCG
* * *
14377723 AAACTTCTAAAAATTACATTTTTGCCCCT
1 AAACTTCCAAAAATTACATTTTTACCCCC
*
14377752 AAAATTCCCAAAAA-TACATTTTTACCCCC
1 AAACTT-CCAAAAATTACATTTTTACCCCC
** * * ** * **
14377781 GGACATCAAAAAATCCCAATTTTGACCCTA
1 AAACTTCCAAAAATTAC-ATTTTTACCCCC
* *
14377811 AAAATTCCAAAAATTACATTTCTACCCCC
1 AAACTTCCAAAAATTACATTTTTACCCCC
* * * * *
14377840 AAACTTCTAAAAACTCCATTTTGGACCCCG
1 AAACTTCCAAAAATTACATTTT-TACCCCC
*
14377870 AAACTTTC-AAAATTAC-TGTTTTAC
1 AAACTTCCAAAAATTACAT-TTTTAC
14377894 TCTCGGATGT
Statistics
Matches: 100, Mismatches: 37, Indels: 11
0.68 0.25 0.07
Matches are distributed among these distances:
28 9 0.09
29 55 0.55
30 36 0.36
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (29 bp):
AAACTTCCAAAAATTACATTTTTACCCCC
Found at i:14377852 original size:59 final size:58
Alignment explanation
Indices: 14377723--14377852 Score: 154
Period size: 59 Copynumber: 2.2 Consensus size: 58
14377713 TTTGGCCTCG
* * * *
14377723 AAACTTCTAAAAATTACATTTTTGCCCCTAAAATTCCCAAAAATACATTTTTACCCCC
1 AAACTTCTAAAAATCACAATTTTGACCCTAAAATTCCCAAAAATACATTTCTACCCCC
** * * *
14377781 GGACATCAAAAAATCCCAATTTTGACCCTAAAAATT-CCAAAAATTACATTTCTACCCCC
1 AAACTTCTAAAAATCACAATTTTGACCCT-AAAATTCCCAAAAA-TACATTTCTACCCCC
14377840 AAACTTCTAAAAA
1 AAACTTCTAAAAA
14377853 CTCCATTTTG
Statistics
Matches: 57, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
58 28 0.49
59 29 0.51
ACGTcount: A:0.42, C:0.27, G:0.03, T:0.28
Consensus pattern (58 bp):
AAACTTCTAAAAATCACAATTTTGACCCTAAAATTCCCAAAAATACATTTCTACCCCC
Found at i:14377867 original size:59 final size:57
Alignment explanation
Indices: 14377723--14377867 Score: 150
Period size: 59 Copynumber: 2.5 Consensus size: 57
14377713 TTTGGCCTCG
* * * *
14377723 AAACTTCTAAAAATTACATTTTTGCCCCTAAAATTCCCAAAAATACATTTTTACCCCC
1 AAACTTCTAAAAAATCCA-TTTTGACCCTAAAATTCCCAAAAATACATTTCTACCCCC
** *
14377781 GGACATC-AAAAAATCCCAATTTTGACCCTAAAAATT-CCAAAAATTACATTTCTACCCCC
1 AAACTTCTAAAAAAT-CC-ATTTTGACCCT-AAAATTCCCAAAAA-TACATTTCTACCCCC
*
14377840 AAACTTCTAAAAACTCCATTTTGGACCC
1 AAACTTCTAAAAAATCCATTTT-GACCC
14377868 CGAAACTTTC
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
57 6 0.09
58 26 0.37
59 32 0.46
60 6 0.09
ACGTcount: A:0.39, C:0.28, G:0.04, T:0.29
Consensus pattern (57 bp):
AAACTTCTAAAAAATCCATTTTGACCCTAAAATTCCCAAAAATACATTTCTACCCCC
Found at i:14377881 original size:59 final size:58
Alignment explanation
Indices: 14377723--14377885 Score: 145
Period size: 59 Copynumber: 2.8 Consensus size: 58
14377713 TTTGGCCTCG
* * * *
14377723 AAACTTCTAAAAATTACATTTTTG-CCCCTAAAATTCCCAAAAA-TACATTTTTACCCCC
1 AAACTTCTAAAAAATCCA-TTTTGACCCCAAAAATT-CCAAAAATTACATTTCTACCCCC
** * *
14377781 GGACATC-AAAAAATCCCAATTTTGACCCTAAAAATTCCAAAAATTACATTTCTACCCCC
1 AAACTTCTAAAAAAT-CC-ATTTTGACCCCAAAAATTCCAAAAATTACATTTCTACCCCC
* * * *
14377840 AAACTTCTAAAAACTCCATTTTGGACCCCGAAACTTTC-AAAATTAC
1 AAACTTCTAAAAAATCCATTTT-GACCCCAAAAATTCCAAAAATTAC
14377886 TGTTTTACTC
Statistics
Matches: 83, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
57 6 0.07
58 30 0.36
59 41 0.49
60 6 0.07
ACGTcount: A:0.39, C:0.28, G:0.04, T:0.29
Consensus pattern (58 bp):
AAACTTCTAAAAAATCCATTTTGACCCCAAAAATTCCAAAAATTACATTTCTACCCCC
Found at i:14378057 original size:29 final size:29
Alignment explanation
Indices: 14377996--14378057 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
14377986 AAATTTTTCC
* * *
14377996 AAAATTACCATTTTGCCCTTGAGAATCCC
1 AAAATTACCATTTTACCCTCGAGAATCCA
* * *
14378025 AAAATTACCATTTTATCCTCGGGTATCCA
1 AAAATTACCATTTTACCCTCGAGAATCCA
14378054 AAAA
1 AAAA
14378058 GTCTCATTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.35, C:0.24, G:0.10, T:0.31
Consensus pattern (29 bp):
AAAATTACCATTTTACCCTCGAGAATCCA
Found at i:14406369 original size:6 final size:6
Alignment explanation
Indices: 14406349--14406404 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
14406339 ACCGAGCCCT
* * * * *
14406349 TTTAAA TTT-AT TTTAAA TTTAGA TTT-AT TTTAAA TTTGAA TTTGAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
14406395 TTTAAA TTTA
1 TTTAAA TTTA
14406405 TTTTCATATT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
5 7 0.17
6 33 0.82
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (6 bp):
TTTAAA
Found at i:14406374 original size:17 final size:17
Alignment explanation
Indices: 14406349--14406404 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 17
14406339 ACCGAGCCCT
*
14406349 TTTAAATTTATTTTAAA
1 TTTAGATTTATTTTAAA
14406366 TTTAGATTTATTTTAAA
1 TTTAGATTTATTTTAAA
*
14406383 TTT-GAATTTGAATTTAAA
1 TTTAG-ATTT-ATTTTAAA
14406401 TTTA
1 TTTA
14406405 TTTTCATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 1 0.03
17 23 0.68
18 10 0.29
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (17 bp):
TTTAGATTTATTTTAAA
Found at i:14406415 original size:18 final size:17
Alignment explanation
Indices: 14406353--14406418 Score: 66
Period size: 17 Copynumber: 3.8 Consensus size: 17
14406343 AGCCCTTTTA
14406353 AATTTAT-TTTAAATTT
1 AATTTATATTTAAATTT
14406369 AGATTTAT-TTTAAATTT
1 A-ATTTATATTTAAATTT
14406386 GAATTTGA-ATTTAAATTT
1 -AATTT-ATATTTAAATTT
*
14406404 ATTTTCATATTTAAA
1 AATTT-ATATTTAAA
14406419 AAAAAAAGCA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
16 1 0.02
17 24 0.56
18 18 0.42
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.56
Consensus pattern (17 bp):
AATTTATATTTAAATTT
Found at i:14408313 original size:30 final size:30
Alignment explanation
Indices: 14408271--14408459 Score: 147
Period size: 29 Copynumber: 6.4 Consensus size: 30
14408261 AACTGTTCAG
* * * *
14408271 AAATTATA-TTTTGGCCTCAAAACTTCTAA
1 AAATTACATTTTTGACCCCAAAACTTCCAA
14408300 AAATTACATTTTTG-CCCCTAAAA-TTCCAA
1 AAATTACATTTTTGACCCC-AAAACTTCCAA
* * * *
14408329 AAAATACATTTTT-ACCCTC-AGACATCTAA
1 AAATTACATTTTTGACCC-CAAAACTTCCAA
** **
14408358 AAATCCCATTTTTGACCCTGAAACTTCCAA
1 AAATTACATTTTTGACCCCAAAACTTCCAA
* *
14408388 AAATTACATTTCT-ACCCCTAAACTTCCAA
1 AAATTACATTTTTGACCCCAAAACTTCCAA
* * * *
14408417 AAACTCCATTTTAGACCCCAAAACTTTCAA
1 AAATTACATTTTTGACCCCAAAACTTCCAA
14408447 AAATTACTATTTT
1 AAATTAC-ATTTT
14408460 ACTCTCGGAT
Statistics
Matches: 124, Mismatches: 27, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
28 2 0.02
29 67 0.54
30 50 0.40
31 5 0.04
ACGTcount: A:0.38, C:0.25, G:0.04, T:0.33
Consensus pattern (30 bp):
AAATTACATTTTTGACCCCAAAACTTCCAA
Found at i:14408396 original size:59 final size:58
Alignment explanation
Indices: 14408290--14408459 Score: 164
Period size: 59 Copynumber: 2.9 Consensus size: 58
14408280 TTTGGCCTCA
* ** * * *
14408290 AAACTTCTAAAAATTACATTTTTGCCCCTAAAATTCCAAAAAATACATTTTTA-CCCT
1 AAACATCTAAAAATCCCATTTTTGACCCTAAACTTCCAAAAATTACATTTTTACCCCT
* *
14408347 CAGACATCTAAAAATCCCATTTTTGACCCTGAAACTTCCAAAAATTACATTTCTACCCCT
1 -AAACATCTAAAAATCCCATTTTTGACCCT-AAACTTCCAAAAATTACATTTTTACCCCT
* * * * *
14408407 AAACTTCCAAAAA-CTCCATTTTAGACCCCAAAACTTTCAAAAATTACTATTTT
1 AAACATCTAAAAATC-CCATTTTTGA-CCCTAAACTTCCAAAAATTAC-ATTTT
14408460 ACTCTCGGAT
Statistics
Matches: 92, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
58 25 0.27
59 56 0.61
60 11 0.12
ACGTcount: A:0.39, C:0.26, G:0.03, T:0.32
Consensus pattern (58 bp):
AAACATCTAAAAATCCCATTTTTGACCCTAAACTTCCAAAAATTACATTTTTACCCCT
Found at i:14413135 original size:29 final size:28
Alignment explanation
Indices: 14413073--14413573 Score: 222
Period size: 29 Copynumber: 17.2 Consensus size: 28
14413063 ATGCCCGAGG
* **
14413073 AAAATGGTAATTTTTAGGAAGTTCGAGGACA
1 AAAATGG-AATTTTT-GGAAGTTTGAGG-GT
*
14413104 AAAATGGAATTTTTGGACA-TTCGAGGGT
1 AAAATGGAATTTTTGGA-AGTTTGAGGGT
* *
14413132 AAAATGATAATTTTGGGAAAGTTTG-GGGTT
1 AAAATG-GAATTTTTGG-AAGTTTGAGGG-T
* *
14413162 AAAAAGGAATTTTTAGAAGTTTGAGGGT
1 AAAATGGAATTTTTGGAAGTTTGAGGGT
* *
14413190 AAAATGGTAATTTTGGGAAAATTTG-GGGT
1 AAAATGG-AATTTTTGG-AAGTTTGAGGGT
* *
14413219 AAAAATGGAATTTTTGGATGTTTGGGGGT
1 -AAAATGGAATTTTTGGAAGTTTGAGGGT
* * *
14413248 AAAATGGTAATATTAGGAAAG-TTCAGGGT
1 AAAATGG-AATTTTTGG-AAGTTTGAGGGT
14413277 AAAAAATGGAATTTTTGGAAGTTT-AGGGGT
1 --AAAATGGAATTTTTGGAAGTTTGA-GGGT
* **
14413307 AAAATGGTAATTTTTGGGAAG-TTCAAAGT
1 AAAATGG-AATTTTT-GGAAGTTTGAGGGT
*
14413336 AAAAAATGGAATTTTTGGACA-TTTGGGGGT
1 --AAAATGGAATTTTTGGA-AGTTTGAGGGT
*
14413366 AAAATGGTAATTTTGGGAAAGTTTG-GGGTT
1 AAAATGG-AATTTTTGG-AAGTTTGAGGG-T
*** * ** *
14413396 AAAAACAAAAGTTTTGGAAG-TCCATGGT
1 -AAAATGGAATTTTTGGAAGTTTGAGGGT
* *
14413424 AAAATGGTAGTTTTTAGGAAG-TTCAGGGT
1 AAAATGG-AATTTTT-GGAAGTTTGAGGGT
* *
14413453 CAAAAATTGAATTTTTGGAAATTT-AGTGGT
1 --AAAATGGAATTTTTGGAAGTTTGAG-GGT
* * *
14413483 AAACTGGTAATTTTTTTGAAGTTT--GTG-
1 AAAATGG-AA-TTTTTGGAAGTTTGAGGGT
* * * *
14413510 ATAATGTAAATTTTGGAAAGTTTGGGGGTT
1 AAAATGGAATTTTTGG-AAGTTTGAGGG-T
* *
14413540 AAAATGTAACTTTTGGAAAGTTTG-GGGT
1 AAAATGGAATTTTTGG-AAGTTTGAGGGT
14413568 CAAAAT
1 -AAAAT
14413574 ATGATTTTTG
Statistics
Matches: 366, Mismatches: 61, Indels: 88
0.71 0.12 0.17
Matches are distributed among these distances:
25 5 0.01
26 8 0.02
27 8 0.02
28 62 0.17
29 131 0.36
30 121 0.33
31 31 0.08
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.35
Consensus pattern (28 bp):
AAAATGGAATTTTTGGAAGTTTGAGGGT
Found at i:14413201 original size:58 final size:59
Alignment explanation
Indices: 14413103--14413496 Score: 383
Period size: 58 Copynumber: 6.7 Consensus size: 59
14413093 GTTCGAGGAC
* *
14413103 AAAAATGGAATTTTTGGACA-TTCGAGGGTAAAATGATAATTTTGGGAAAGTTTGGGGTT
1 AAAAATGGAATTTTTGGA-AGTTTGAGGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTT
* *
14413162 AAAAA-GGAATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTGGGAAAATTTGGGG-T
1 AAAAATGGAATTTTTGGAAGTTTGAGGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTT
* * * * ** *
14413219 AAAAATGGAATTTTTGGATGTTTGGGGGTAAAATGGTAATATTAGGAAAGTTCAGGGTA
1 AAAAATGGAATTTTTGGAAGTTTGAGGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTT
**** *
14413278 AAAAATGGAATTTTTGGAAGTTT-AGGGGTAAAATGGTAATTTTTGGG-AAGTTCAAAGTA
1 AAAAATGGAATTTTTGGAAGTTTGA-GGGTAAAATGGTAA-TTTTGGGAAAGTTTGGGGTT
*
14413337 AAAAATGGAATTTTTGGACA-TTTGGGGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTT
1 AAAAATGGAATTTTTGGA-AGTTTGAGGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTT
*** * ** * * * ** *
14413396 AAAAACAAAAGTTTTGGAAG-TCCATGGTAAAATGGTAGTTTTTAGG-AAGTTCAGGGTC
1 AAAAATGGAATTTTTGGAAGTTTGAGGGTAAAATGGTA-ATTTTGGGAAAGTTTGGGGTT
* * *
14413454 AAAAATTGAATTTTTGGAAATTT-AGTGGTAAACTGGTAATTTT
1 AAAAATGGAATTTTTGGAAGTTTGAG-GGTAAAATGGTAATTTT
14413497 TTTGAAGTTT
Statistics
Matches: 276, Mismatches: 47, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
57 7 0.03
58 138 0.50
59 125 0.45
60 6 0.02
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (59 bp):
AAAAATGGAATTTTTGGAAGTTTGAGGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTT
Found at i:14413505 original size:59 final size:59
Alignment explanation
Indices: 14413073--14413497 Score: 357
Period size: 59 Copynumber: 7.3 Consensus size: 59
14413063 ATGCCCGAGG
* * *
14413073 AAAATGGTAATTTTTAGGAAGTTC-GAGG-ACAAAAATGGAATTTTTGGACA-TTCGAGGGT
1 AAAATGGTAATTTTTGGGAAGTTCAG-GGTA-AAAAATGGAATTTTTGGAAATTTAG-GGGT
* ** * * *
14413132 AAAATGATAA-TTTTGGGAAAGTTTGGGGTTAAAAA-GGAATTTTTAGAAGTTT-GAGGGT
1 AAAATGGTAATTTTTGGG-AAGTTCAGGGTAAAAAATGGAATTTTTGGAAATTTAG-GGGT
* ** ** *
14413190 AAAATGGTAA-TTTTGGGAAAATTTGGGGT-AAAAATGGAATTTTTGGATGTTTGGGGGT
1 AAAATGGTAATTTTTGGG-AAGTTCAGGGTAAAAAATGGAATTTTTGGAAATTTAGGGGT
* * * *
14413248 AAAATGGTAATATTAGGAAAGTTCAGGGTAAAAAATGGAATTTTTGGAAGTTTAGGGGT
1 AAAATGGTAATTTTTGGGAAGTTCAGGGTAAAAAATGGAATTTTTGGAAATTTAGGGGT
** * *
14413307 AAAATGGTAATTTTTGGGAAGTTCAAAGTAAAAAATGGAATTTTTGGACATTTGGGGGT
1 AAAATGGTAATTTTTGGGAAGTTCAGGGTAAAAAATGGAATTTTTGGAAATTTAGGGGT
** * *** * * ** *
14413366 AAAATGGTAA-TTTTGGGAAAGTTTGGGGTTAAAAACAAAAGTTTTGGAAGTCCA-TGGT
1 AAAATGGTAATTTTTGGG-AAGTTCAGGGTAAAAAATGGAATTTTTGGAAATTTAGGGGT
* * * * *
14413424 AAAATGGTAGTTTTTAGGAAGTTCAGGGTCAAAAATTGAATTTTTGGAAATTTAGTGGT
1 AAAATGGTAATTTTTGGGAAGTTCAGGGTAAAAAATGGAATTTTTGGAAATTTAGGGGT
*
14413483 AAACTGGTAATTTTT
1 AAAATGGTAATTTTT
14413498 TTGAAGTTTG
Statistics
Matches: 299, Mismatches: 56, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
57 5 0.02
58 132 0.44
59 161 0.54
60 1 0.00
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGGAAGTTCAGGGTAAAAAATGGAATTTTTGGAAATTTAGGGGT
Found at i:14413582 original size:29 final size:30
Alignment explanation
Indices: 14413520--14413585 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
14413510 ATAATGTAAA
* *
14413520 TTTTGGAAAGTTTGGGGGTTAAAATGTAAC
1 TTTTGGAAAGTTTGGGGGTCAAAATATAAC
* *
14413550 TTTTGGAAAGTTT-GGGGTCAAAATATGAT
1 TTTTGGAAAGTTTGGGGGTCAAAATATAAC
14413579 TTTTGGA
1 TTTTGGA
14413586 CATTTTAGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 19 0.59
30 13 0.41
ACGTcount: A:0.29, C:0.03, G:0.29, T:0.39
Consensus pattern (30 bp):
TTTTGGAAAGTTTGGGGGTCAAAATATAAC
Found at i:14415527 original size:17 final size:16
Alignment explanation
Indices: 14415505--14415538 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
14415495 GACTTTTGTT
14415505 TTTTTAAATTTAGAATA
1 TTTTTAAATTTA-AATA
14415522 TTTTTAAATTTAAATA
1 TTTTTAAATTTAAATA
14415538 T
1 T
14415539 GAAATTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TTTTTAAATTTAAATA
Found at i:14416595 original size:209 final size:208
Alignment explanation
Indices: 14415979--14416610 Score: 822
Period size: 209 Copynumber: 3.0 Consensus size: 208
14415969 AGATAACCAT
* * * *
14415979 TTTATTGCTTCGATCTGCTTCTCAATATCTCATCAGGCAGCTGGGGTTCGAAGATTCGCTTACTT
1 TTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTT
*
14416044 TGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTT
66 TGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTT
** ** * * * *
14416109 GTTTCAATCTGCTTCTCAGTATCTCATCAAGAAGACGAAT-TTGTTCCACTTCTC-AGTATCTCA
131 GTTTTGATCCACTTCTCTGTGTCTCATCAGGAAGACG-ATCTGGTT-CACTTCTCTA-TATCTCA
* * ***
14416172 TTAGGAAGCTAACCAT
193 TCAGGAAGGTAACTGC
* * * *
14416188 TTTATTGCTTCGACATGCTTCTTAATATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCATTT
1 TTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTT
* *
14416253 TGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCAGTATCTTATCAGGAAGATGACCGCTTCGCTT
66 TGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTT
* * * *
14416318 AG-TTTGATCCACTTCTCTGTGTCTTATCAGGAAGACGGATCTGGTTCACTTCTATGTATCTTAT
131 -GTTTTGATCCACTTCTCTGTGTCTCATCAGGAAGAC-GATCTGGTTCACTTCTCTATATCTCAT
14416382 CAGGAAGGTAACTGC
194 CAGGAAGGTAACTGC
* * *
14416397 TTTATTGCTTCGACCTGCTTCTCAATATCTTATTAGGAAGCTGGGGTTCGAAGATTTTCTCACTT
1 TTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTT
* ** * * * *
14416462 TGAGCCTGATTTTATTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGAAGACCGCATCGCTT
66 TGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTT
*
14416527 GTTTTGATCCACTTCTCTGTGTCTCATCAGGAAGACAGATCTGGTTTACTTCTCTATATCTCATC
131 GTTTTGATCCACTTCTCTGTGTCTCATCAGGAAGAC-GATCTGGTTCACTTCTCTATATCTCATC
14416592 AGGAAGGTAA-TCGC
195 AGGAAGGTAACT-GC
14416606 TTTAT
1 TTTAT
14416611 GTTTTGGATA
Statistics
Matches: 367, Mismatches: 50, Indels: 12
0.86 0.12 0.03
Matches are distributed among these distances:
208 2 0.01
209 359 0.98
210 6 0.02
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (208 bp):
TTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTT
TGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTT
GTTTTGATCCACTTCTCTGTGTCTCATCAGGAAGACGATCTGGTTCACTTCTCTATATCTCATCA
GGAAGGTAACTGC
Found at i:14418454 original size:25 final size:23
Alignment explanation
Indices: 14418426--14418471 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
14418416 GTTGGATTCA
14418426 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
14418451 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
14418472 CTTAATTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:14420415 original size:12 final size:11
Alignment explanation
Indices: 14420384--14420426 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
14420374 CATAATTAAA
14420384 AAAATTAAAAAT
1 AAAA-TAAAAAT
*
14420396 AAAATAAAACT
1 AAAATAAAAAT
14420407 AAAACTAAAAAT
1 AAAA-TAAAAAT
*
14420419 GAAATAAA
1 AAAATAAA
14420427 TAAACTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 14 0.52
12 13 0.48
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:14423325 original size:14 final size:13
Alignment explanation
Indices: 14423273--14423337 Score: 51
Period size: 13 Copynumber: 4.9 Consensus size: 13
14423263 ATAAAAGGGA
*
14423273 AAAAAATTAAAAT
1 AAAAAATAAAAAT
*
14423286 AGAAAAAT-TAAAT
1 A-AAAAATAAAAAT
* **
14423299 TAAAAATGCAAAT
1 AAAAAATAAAAAT
14423312 AATAAAATAAAAAT
1 AA-AAAATAAAAAT
*
14423326 AAATAATAAAAA
1 AAAAAATAAAAA
14423338 AATGACTAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
12 6 0.14
13 19 0.45
14 17 0.40
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.22
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:14424421 original size:25 final size:23
Alignment explanation
Indices: 14424393--14424438 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
14424383 GTTGGATCCA
14424393 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
14424418 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
14424439 CCTTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:14429059 original size:6 final size:6
Alignment explanation
Indices: 14429050--14429092 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
14429040 AATTTTGATT
* * * *
14429050 ATTTAA ATTTGA ATTTGA ATTTAA ATTTAT ATTCAA ATTTAA A
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA A
14429093 AAAAAAAGCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (6 bp):
ATTTAA
Found at i:14431025 original size:57 final size:57
Alignment explanation
Indices: 14430935--14431077 Score: 157
Period size: 57 Copynumber: 2.5 Consensus size: 57
14430925 CCTTAAACTG
* ** * *
14430935 TTCAAAAATTATATTTTGGCCTCGAAACTTCTAAAAAT-TACATTTTTG-CTCCTAAAA
1 TTCAAAAATTACATTTTTACCTCGAAACATCTAAAAATCT-CATTTTTGAC-CCGAAAA
*
14430992 TTCAAAAATTACATTTTTACACTCGAAA-ATCTAAAAATCTCATTTTTGAACCCGAAAC
1 TTCAAAAATTACATTTTTAC-CTCGAAACATCTAAAAATCTCATTTTTG-ACCCGAAAA
14431050 TTCCAAAAATTACATTTTTACCCTCGAA
1 TT-CAAAAATTACATTTTTA-CCTCGAA
14431078 CTTCCAAAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
57 34 0.46
58 15 0.20
59 24 0.32
60 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.36
Consensus pattern (57 bp):
TTCAAAAATTACATTTTTACCTCGAAACATCTAAAAATCTCATTTTTGACCCGAAAA
Found at i:14431087 original size:28 final size:28
Alignment explanation
Indices: 14430935--14431109 Score: 115
Period size: 29 Copynumber: 6.0 Consensus size: 28
14430925 CCTTAAACTG
* **
14430935 TTCAAAAATTATA-TTTTGGCCTCGAAAC
1 TTCAAAAATTACATTTTTACCCTCG-AAC
* * *
14430963 TTCTAAAAATTACATTTTTGCTCCT-AAAA
1 TTC-AAAAATTACATTTTTAC-CCTCGAAC
* *
14430992 TTCAAAAATTACATTTTTACACTCGAAA
1 TTCAAAAATTACATTTTTACCCTCGAAC
* *
14431020 ATCTAAAAATCT-CATTTTTGAACC-CGAAAC
1 TTC-AAAAAT-TACATTTTT-ACCCTCG-AAC
14431050 TTCCAAAAATTACATTTTTACCCTCGAAC
1 TT-CAAAAATTACATTTTTACCCTCGAAC
*
14431079 TTCCAAAATTCCATACATTTTTACCCTCGAA
1 TT-CAAAAAT---TACATTTTTACCCTCGAA
14431110 TGTCCAAAAA
Statistics
Matches: 119, Mismatches: 14, Indels: 24
0.76 0.09 0.15
Matches are distributed among these distances:
27 2 0.02
28 24 0.20
29 45 0.38
30 26 0.22
31 4 0.03
32 18 0.15
ACGTcount: A:0.37, C:0.22, G:0.05, T:0.35
Consensus pattern (28 bp):
TTCAAAAATTACATTTTTACCCTCGAAC
Found at i:14431218 original size:59 final size:60
Alignment explanation
Indices: 14431144--14431276 Score: 148
Period size: 59 Copynumber: 2.2 Consensus size: 60
14431134 CCAAAACTTT
* * * * *
14431144 AAAAATTACCGTTTTACTCC-CGGATGTCCAAAACATCCATTTTTGATCCC-GAA-TTTTCC
1 AAAAATTACCATTTTA-TCCTCAGATGTCCAAAACAT-CATTTTTAACCCCAAAATTTTTCC
* **
14431203 AAAAATTACCATTTTATCCTCAGATGTCTAAAATGTCATTTTTAACCCCAAAATTTTTCC
1 AAAAATTACCATTTTATCCTCAGATGTCCAAAACATCATTTTTAACCCCAAAATTTTTCC
14431263 -AAAATTACCATTTT
1 AAAAATTACCATTTT
14431277 GCCTCCAAGA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
58 14 0.22
59 43 0.68
60 6 0.10
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (60 bp):
AAAAATTACCATTTTATCCTCAGATGTCCAAAACATCATTTTTAACCCCAAAATTTTTCC
Found at i:14431221 original size:29 final size:28
Alignment explanation
Indices: 14431144--14431221 Score: 70
Period size: 29 Copynumber: 2.7 Consensus size: 28
14431134 CCAAAACTTT
* *
14431144 AAAAATTACCGTTTTACTCCCGGATGTCC
1 AAAAATTACCATTTTA-TCCCGAATGTCC
*
14431173 AAAACA-T-CCATTTTTGATCCCGAATTTTCC
1 AAAA-ATTACCA-TTTT-ATCCCGAA-TGTCC
14431203 AAAAATTACCATTTTATCC
1 AAAAATTACCATTTTATCC
14431222 TCAGATGTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
28 2 0.05
29 20 0.50
30 15 0.38
31 3 0.08
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.35
Consensus pattern (28 bp):
AAAAATTACCATTTTATCCCGAATGTCC
Found at i:14437649 original size:11 final size:11
Alignment explanation
Indices: 14437633--14437666 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
14437623 GATCGGGCCG
14437633 TTTTAAATTTA
1 TTTTAAATTTA
14437644 TTTTAAATTTGA
1 TTTTAAATTT-A
*
14437656 ATTTAAATTTA
1 TTTTAAATTTA
14437667 AATTTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (11 bp):
TTTTAAATTTA
Found at i:14437658 original size:6 final size:6
Alignment explanation
Indices: 14437634--14437686 Score: 56
Period size: 6 Copynumber: 9.0 Consensus size: 6
14437624 ATCGGGCCGT
* * *
14437634 TTTAAA TTT-AT TTTAAA TTTGAA TTTAAA TTTAAA TTT-AT TTTCAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA
14437681 TTTAAA
1 TTTAAA
14437687 AAAAAAAAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
5 8 0.21
6 26 0.68
7 4 0.11
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:14439595 original size:29 final size:30
Alignment explanation
Indices: 14439523--14439630 Score: 89
Period size: 29 Copynumber: 3.7 Consensus size: 30
14439513 TATTATGGCA
* * *
14439523 TCGAAACTTCTAAAATTTACATTTTTGCCC
1 TCGAAAATTCTAAAAATTACATTTTTACCC
* *
14439553 -CTAAAATTCCAAAAATTACATTTTTACCC
1 TCGAAAATTCTAAAAATTACATTTTTACCC
* **
14439582 TCGAGAA-TCTAAAAATCCCATTTTTGA-CC
1 TCGAAAATTCTAAAAATTACATTTTT-ACCC
*
14439611 TCGAAACTT-TCAAAAATTAC
1 TCGAAAATTCT-AAAAATTAC
14439631 CGTTTTACTC
Statistics
Matches: 60, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
29 47 0.78
30 13 0.22
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (30 bp):
TCGAAAATTCTAAAAATTACATTTTTACCC
Found at i:14446238 original size:58 final size:57
Alignment explanation
Indices: 14446176--14446565 Score: 234
Period size: 58 Copynumber: 6.7 Consensus size: 57
14446166 GATTAAATGC
* * *
14446176 AATTTTCGGATGCCTGAGGAAAAATGGTAATCTTTAGGAAGTTCGAGGTTAAAAATTG
1 AATTTTCGGATGTCTGAGGTAAAATGGTAAT-TTTAGGAAGTTCGAGGTTAAAAATAG
* * * *
14446234 AATTTTTGGACAT-TCGGGGGTAAAATGGTAATTTTGGGAAGTTCGAGGTTAAAAATAG
1 AATTTTCGG--ATGTCTGAGGTAAAATGGTAATTTTAGGAAGTTCGAGGTTAAAAATAG
* * * * * * *
14446292 AATTTTGGGAAGTTTGAGGGTAAAATGGTAATTTTAGGAAAATTTG-GGGTAAAAATGG
1 AATTTTCGGATGTCTGA-GGTAAAATGGTAATTTTAGG-AAGTTCGAGGTTAAAAATAG
** * * * * *
14446350 AATTTTTTGATGTTTGGGGGTAAAATGGTGATTTTGGGAAAGTTC-AGGGTTAAAAATGG
1 AATTTTCGGATGTCT-GAGGTAAAATGGTAATTTTAGG-AAGTTCGA-GGTTAAAAATAG
* * * * *
14446409 AATTTTTGGACAT-TC-GAGGGTAAAATGGCAATTTTGGGAAAGTTTGGGGTTAAAAATAG
1 AATTTTCGG--ATGTCTGA-GGTAAAATGGTAATTTTAGG-AAGTTCGAGGTTAAAAATAG
* * ** * * * * *
14446468 AATTTTTGGAAGTCCAAGGTAAAATAGTAGTTTTTAGGAAGTT-TAGGGTCAAAAATGG
1 AATTTTCGGATGTCTGAGGTAAAATGGTA-ATTTTAGGAAGTTCGA-GGTTAAAAATAG
** ** * *
14446526 AATTTTTTGACATTTGAGGATAAAATGGTAATTTTGGGAA
1 AATTTTCGGATGTCTGAGG-TAAAATGGTAATTTTAGGAA
14446566 AGTTTAGGGT
Statistics
Matches: 262, Mismatches: 53, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
56 1 0.00
57 3 0.01
58 153 0.58
59 100 0.38
60 3 0.01
61 2 0.01
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (57 bp):
AATTTTCGGATGTCTGAGGTAAAATGGTAATTTTAGGAAGTTCGAGGTTAAAAATAG
Found at i:14446249 original size:29 final size:30
Alignment explanation
Indices: 14446195--14446596 Score: 207
Period size: 29 Copynumber: 13.7 Consensus size: 30
14446185 ATGCCTGAGG
* *
14446195 AAAAATGGTAATCTTTAGG-AAGTTCGAGGTT
1 AAAAATGG-AAT-TTTGGGAAAGTTCGAGGGT
* * * *
14446226 AAAAATTGAATTTTTGGACA-TTCGGGGGT
1 AAAAATGGAATTTTGGGAAAGTTCGAGGGT
*
14446255 -AAAATGGTAATTTTGGG-AAGTTCGAGGTT
1 AAAAATGG-AATTTTGGGAAAGTTCGAGGGT
* *
14446284 AAAAATAGAATTTTGGG-AAGTTTGAGGGT
1 AAAAATGGAATTTTGGGAAAGTTCGAGGGT
* * *
14446313 -AAAATGGTAATTTTAGGAAAATTTG-GGGT
1 AAAAATGG-AATTTTGGGAAAGTTCGAGGGT
** * * *
14446342 AAAAATGGAATTTTTTG-ATGTTTGGGGGT
1 AAAAATGGAATTTTGGGAAAGTTCGAGGGT
*
14446371 -AAAATGGTGATTTTGGGAAAGTTC-AGGGTT
1 AAAAATGG-AATTTTGGGAAAGTTCGAGGG-T
* *
14446401 AAAAATGGAATTTTTGGACA-TTCGAGGGT
1 AAAAATGGAATTTTGGGAAAGTTCGAGGGT
*
14446430 -AAAATGGCAATTTTGGGAAAGTTTG-GGGTT
1 AAAAATGG-AATTTTGGGAAAGTTCGAGGG-T
* * * *
14446460 AAAAATAGAATTTTTGG-AAG-TCCAAGGT
1 AAAAATGGAATTTTGGGAAAGTTCGAGGGT
* * * *
14446488 -AAAATAGTAGTTTTTAGG-AAGTT-TAGGGT
1 AAAAAT-GGA-ATTTTGGGAAAGTTCGAGGGT
** * * *
14446517 CAAAAATGGAATTTTTTGACA-TTTGAGGAT
1 -AAAAATGGAATTTTGGGAAAGTTCGAGGGT
*
14446547 -AAAATGGTAATTTTGGGAAAGTT-TAGGGT
1 AAAAATGG-AATTTTGGGAAAGTTCGAGGGT
* *
14446576 CAAAAATGGGATTTTTGGAAA
1 -AAAAATGGAATTTTGGGAAA
14446597 TTTATGGGTA
Statistics
Matches: 285, Mismatches: 57, Indels: 59
0.71 0.14 0.15
Matches are distributed among these distances:
27 5 0.02
28 42 0.15
29 133 0.47
30 73 0.26
31 32 0.11
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (30 bp):
AAAAATGGAATTTTGGGAAAGTTCGAGGGT
Found at i:14446262 original size:59 final size:59
Alignment explanation
Indices: 14446196--14446619 Score: 400
Period size: 59 Copynumber: 7.2 Consensus size: 59
14446186 TGCCTGAGGA
* * * *
14446196 AAAATGGTAATCTTTAGG-AAGTTCGAGGTTAAAAATTGAATTTTTGGACATTCGGGGGT
1 AAAATGGTAAT-TTTGGGAAAGTTCGAGGTTAAAAATGGAATTTTTGGACATTTGAGGGT
* *
14446255 AAAATGGTAATTTTGGG-AAGTTCGAGGTTAAAAATAGAATTTTGGGA-AGTTTGAGGGT
1 AAAATGGTAATTTTGGGAAAGTTCGAGGTTAAAAATGGAATTTTTGGACA-TTTGAGGGT
* * * * * ** *
14446313 AAAATGGTAATTTTAGGAAAATTTG-GGGTAAAAATGGAATTTTTTGATGTTTGGGGGT
1 AAAATGGTAATTTTGGGAAAGTTCGAGGTTAAAAATGGAATTTTTGGACATTTGAGGGT
* *
14446371 AAAATGGTGATTTTGGGAAAGTTC-AGGGTTAAAAATGGAATTTTTGGACATTCGAGGGT
1 AAAATGGTAATTTTGGGAAAGTTCGA-GGTTAAAAATGGAATTTTTGGACATTTGAGGGT
* * * * * ** *
14446430 AAAATGGCAATTTTGGGAAAGTTTGGGGTTAAAAATAGAATTTTTGGA-AGTCCAAGGT
1 AAAATGGTAATTTTGGGAAAGTTCGAGGTTAAAAATGGAATTTTTGGACATTTGAGGGT
* * * * * * *
14446488 AAAATAGTAGTTTTTAGG-AAGTT-TAGGGTCAAAAATGGAATTTTTTGACATTTGAGGAT
1 AAAATGGTA-ATTTTGGGAAAGTTCGA-GGTTAAAAATGGAATTTTTGGACATTTGAGGGT
* * * *
14446547 AAAATGGTAATTTTGGGAAAGTT-TAGGGTCAAAAATGGGATTTTTGGAAATTT-ATGGGT
1 AAAATGGTAATTTTGGGAAAGTTCGA-GGTTAAAAATGGAATTTTTGGACATTTGA-GGGT
14446606 AAAATGGTAATTTT
1 AAAATGGTAATTTT
14446620 TGTGAAGTTT
Statistics
Matches: 301, Mismatches: 53, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
57 1 0.00
58 147 0.49
59 153 0.51
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.35
Consensus pattern (59 bp):
AAAATGGTAATTTTGGGAAAGTTCGAGGTTAAAAATGGAATTTTTGGACATTTGAGGGT
Found at i:14446430 original size:117 final size:116
Alignment explanation
Indices: 14446196--14446628 Score: 451
Period size: 117 Copynumber: 3.7 Consensus size: 116
14446186 TGCCTGAGGA
* * * *
14446196 AAAATGGTAATCTTTAGG-AAGTTCGAGGTTAAAAATTGAATTTTTGGACATTCGGGGGTAAAAT
1 AAAATGGTAAT-TTTAGGAAAGTTTG-GGGTAAAAATGGAATTTTTGGAAATTCGGGGGTAAAAT
* *
14446260 GGTAATTTTGGGAAGTTC-GAGGTTAAAAATAGAATTTTGGGA-AGTTTGAGGGT
64 GGTAATTTTGGGAAGTTCAG-GGTTAAAAATGGAATTTTTGGACA-TTTGAGGGT
* * ** *
14446313 AAAATGGTAATTTTAGGAAAATTTGGGGTAAAAATGGAATTTTTTGATGTTTGGGGGTAAAATGG
1 AAAATGGTAATTTTAGGAAAGTTTGGGGTAAAAATGGAATTTTTGGAAATTCGGGGGTAAAATGG
* *
14446378 TGATTTTGGGAAAGTTCAGGGTTAAAAATGGAATTTTTGGACATTCGAGGGT
66 TAATTTTGGG-AAGTTCAGGGTTAAAAATGGAATTTTTGGACATTTGAGGGT
* * * * *** *
14446430 AAAATGGCAATTTTGGGAAAGTTTGGGGTTAAAAATAGAATTTTTGG-AAGTCCAAGGTAAAATA
1 AAAATGGTAATTTTAGGAAAGTTTGGGG-TAAAAATGGAATTTTTGGAAATTCGGGGGTAAAATG
* * * * * *
14446494 GTAGTTTTTAGGAAGTTTAGGGTCAAAAATGGAATTTTTTGACATTTGAGGAT
65 GTA-ATTTTGGGAAGTTCAGGGTTAAAAATGGAATTTTTGGACATTTGAGGGT
* * * ***
14446547 AAAATGGTAATTTTGGGAAAGTTTAGGGTCAAAAATGGGATTTTTGGAAATTTATGGGTAAAATG
1 AAAATGGTAATTTTAGGAAAGTTTGGGGT-AAAAATGGAATTTTTGGAAATTCGGGGGTAAAATG
*
14446612 GTAATTTTTGTGAAGTT
65 GTAA-TTTTGGGAAGTT
14446629 TGTGATAATG
Statistics
Matches: 261, Mismatches: 46, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
116 50 0.19
117 163 0.62
118 48 0.18
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.35
Consensus pattern (116 bp):
AAAATGGTAATTTTAGGAAAGTTTGGGGTAAAAATGGAATTTTTGGAAATTCGGGGGTAAAATGG
TAATTTTGGGAAGTTCAGGGTTAAAAATGGAATTTTTGGACATTTGAGGGT
Found at i:14446670 original size:30 final size:30
Alignment explanation
Indices: 14446635--14446715 Score: 117
Period size: 30 Copynumber: 2.7 Consensus size: 30
14446625 AGTTTGTGAT
14446635 AATGTAAATTTTGGAAAGTTTGGGGGTCAA
1 AATGTAAATTTTGGAAAGTTTGGGGGTCAA
*
14446665 AATGTAACTTTTGGAAAGTTTGGGGGTCAA
1 AATGTAAATTTTGGAAAGTTTGGGGGTCAA
* * * *
14446695 AATATGATTTTTGGATAGTTT
1 AATGTAAATTTTGGAAAGTTT
14446716 AGGGACCTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.38
Consensus pattern (30 bp):
AATGTAAATTTTGGAAAGTTTGGGGGTCAA
Found at i:14446707 original size:86 final size:86
Alignment explanation
Indices: 14446555--14446715 Score: 186
Period size: 86 Copynumber: 1.9 Consensus size: 86
14446545 ATAAAATGGT
* * * *
14446555 AATTTTGGGAAAGTTTAGGGTCAAAAATGGGATTTTTGGAAATTTATGGGTAAAATGGTAATTTT
1 AATTTTGGGAAAGTTTAGGGTCAAAAATGGAACTTTTGGAAATTTAGGGGTAAAATGATAATTTT
14446620 TGTGA-AGTTTGTGATAATGTA
66 TG-GATAGTTTGTGATAATGTA
* * * *
14446641 AATTTT-GGAAAGTTTGGGGGTC-AAAATGTAACTTTTGGAAAGTTTGGGGGTCAAAAT-ATGAT
1 AATTTTGGGAAAGTTT-AGGGTCAAAAATGGAACTTTTGGAAA-TTTAGGGGT-AAAATGATAAT
14446703 TTTTGGATAGTTT
63 TTTTGGATAGTTT
14446716 AGGGACCTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
85 27 0.43
86 31 0.49
87 5 0.08
ACGTcount: A:0.31, C:0.02, G:0.27, T:0.39
Consensus pattern (86 bp):
AATTTTGGGAAAGTTTAGGGTCAAAAATGGAACTTTTGGAAATTTAGGGGTAAAATGATAATTTT
TGGATAGTTTGTGATAATGTA
Found at i:14448635 original size:17 final size:16
Alignment explanation
Indices: 14448615--14448646 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
14448605 CTTTTGTTTA
14448615 TTTAAATTTAGAATATT
1 TTTAAATTTA-AATATT
14448632 TTTAAATTTAAATAT
1 TTTAAATTTAAATAT
14448647 AAATATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTAAATTTAAATATT
Found at i:14449161 original size:48 final size:49
Alignment explanation
Indices: 14449001--14449169 Score: 236
Period size: 49 Copynumber: 3.5 Consensus size: 49
14448991 ATTTGGTCTA
* *
14449001 CTTCTCTGTATCTCATCAGGAAGATGATCGCATCACTTGTTTCAATCCG
1 CTTCTCAGTATCTCATCAGGAAGATGAACGCATCACTTGTTTCAATCCG
*
14449050 CTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCG
1 CTTCTCAGTATCTCATCAGGAAGATGAACGCATCACTTGTTTCAATCCG
* * *
14449099 CTTCTCAGTATCTCATCAGGAAGAT-AAC-CATTATATTGCTTCAA-CCTG
1 CTTCTCAGTATCTCATCAGGAAGATGAACGCATCA-CTTGTTTCAATCC-G
*
14449147 CTTCTCAATATCTCATCAGGAAG
1 CTTCTCAGTATCTCATCAGGAAG
14449170 CTGGGGTTCG
Statistics
Matches: 111, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
47 6 0.05
48 33 0.30
49 72 0.65
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.33
Consensus pattern (49 bp):
CTTCTCAGTATCTCATCAGGAAGATGAACGCATCACTTGTTTCAATCCG
Found at i:14449521 original size:209 final size:208
Alignment explanation
Indices: 14449099--14449753 Score: 846
Period size: 209 Copynumber: 3.1 Consensus size: 208
14449089 TTTCAATCCG
* * *
14449099 CTTCTCAGTATCTCATCAGGAAGATAACCATTATATTGCTTCAACCTGCTTCTCAATATCTCATC
1 CTTCTCAGTATCTCATCAGGAAGGTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
* *
14449164 AGGAAGCTGGGGTTCGAAGATTCGCTTACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
66 AGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
* ** * * * ** * *
14449229 ATATCTCATCAGGAAGATGACAACATCACTTGTTTCAATCTGCTTCTCCGTATCTCATCAGAAAG
131 GTATCTCATCAGGAAGATGACCGCTTCGCTTGTTT-GATCCACTTCTCTGTGTCTCATCAGAAAG
* * * *
14449294 GCGAATTTGGTCCA
195 ACGGATCTGGTTCA
* *
14449308 CTTCTCAGTATCTCATCTGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
1 CTTCTCAGTATCTCATCAGGAAGGTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
* * * *
14449373 AAGAAGTTGGGGTTCGAAGATTTGCTCATTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTTA
66 AGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
* * *
14449438 GTATCTTATCAGGAAGATGACCGCTTCGCTTAGTTTGACCCACTTCTCTGTGTCTCATTAGAAAG
131 GTATCTCATCAGGAAGATGACCGCTTCGCTT-GTTTGATCCACTTCTCTGTGTCTCATCAGAAAG
14449503 ACGGATCTGGTTCA
195 ACGGATCTGGTTCA
* *** * *
14449517 CTTCTCTGTATCTCATCAGGAAGGTAACTGCTTTATTACTTCGACCTGCTTCTCAATATCTCATT
1 CTTCTCAGTATCTCATCAGGAAGGTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
* ** * *
14449582 AGGAAGCTGGGGTTCGAAGATTCT-CTCACTTTGAGCCTGATTTTATTGATTTGGTCTTCTTCTC
66 AGGAAGCTGGGGTTCGAAGATT-TGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTC
* * *
14449646 AGTATCTCATCAAGAAGATGACCGCATT-GCTTGTATTGTTCCACTTCTCTGTGTCTCATCAGGA
130 AGTATCTCATCAGGAAGATGACCGC-TTCGCTTGT-TTGATCCACTTCTCTGTGTCTCATCAGAA
**
14449710 AGATAGATCTGGTTCA
193 AGACGGATCTGGTTCA
*
14449726 CTTCTCTGTATCTCATCAGGAAGGTAAC
1 CTTCTCAGTATCTCATCAGGAAGGTAAC
14449754 TGCTTTATAT
Statistics
Matches: 390, Mismatches: 52, Indels: 8
0.87 0.12 0.02
Matches are distributed among these distances:
208 2 0.01
209 381 0.98
210 7 0.02
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (208 bp):
CTTCTCAGTATCTCATCAGGAAGGTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
AGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
GTATCTCATCAGGAAGATGACCGCTTCGCTTGTTTGATCCACTTCTCTGTGTCTCATCAGAAAGA
CGGATCTGGTTCA
Found at i:14459350 original size:30 final size:29
Alignment explanation
Indices: 14459306--14459794 Score: 135
Period size: 30 Copynumber: 16.8 Consensus size: 29
14459296 TGACAGGGGC
14459306 AAAATGGTAATTTTTAGGAAGTTTGAGGTT
1 AAAATGG-AATTTTTAGGAAGTTTGAGGTT
* *
14459336 AAAAATGGAATTTTT-GGACA-TTCGGGGTT
1 -AAAATGGAATTTTTAGGA-AGTTTGAGGTT
* * *
14459365 AAAATGGTAGTTTTGGGAAAGTTT-A---T
1 AAAATGGAATTTTTAGG-AAGTTTGAGGTT
* * *
14459391 GAAATGGAATTTTTA-GAAGTTTTAGGGT
1 AAAATGGAATTTTTAGGAAGTTTGAGGTT
* * *
14459419 AAAATGGTAA-TTTTAGGAAAGTATGGGGTCA
1 AAAATGG-AATTTTTAGG-AAGTTTGAGGT-T
** * *
14459450 AAAATAAAATTTTT-GGATGTTTGAGGGT
1 AAAATGGAATTTTTAGGAAGTTTGAGGTT
* * * *
14459478 AAAATGGTAA-TTTTGGGAAAGTTCGGGGTCA
1 AAAATGG-AATTTTTAGG-AAGTTTGAGGT-T
* ** * * *
14459509 AAAATGGTATTTTTTTGAAGTCTAAGGGT
1 AAAATGGAATTTTTAGGAAGTTTGAGGTT
* *
14459538 AAAATGGTAATATTTAGGAAGTTTG-GAGTCA
1 AAAATGG-AATTTTTAGGAAGTTTGAG-GT-T
* * *
14459569 AAAATGGAATTTTTA-GACA-TTCGGGGGT
1 AAAATGGAATTTTTAGGA-AGTTTGAGGTT
* * *
14459597 GAAATGGTAA-TTTTGGGAAAGTTTGGGGTT
1 AAAATGG-AATTTTTAGG-AAGTTTGAGGTT
* *
14459627 AAAAATAGAATTTTT-GGAAGTTT-AGGGGT
1 -AAAATGGAATTTTTAGGAAGTTTGA-GGTT
*
14459656 AAAATGGTAA-TTTT-GGTAAGTTT-AGGGTGA
1 AAAATGG-AATTTTTAGG-AAGTTTGA-GGT-T
* * *
14459686 AAAATGGAATTTTT-TGATA-TTTGGGGGT
1 AAAATGGAATTTTTAGGA-AGTTTGAGGTT
* * * * * *
14459714 AGAATGGTATTTTTGGGAAAGTTCGGGGTCA
1 AAAATGGAATTTTTAGG-AAGTTTGAGGT-T
* *
14459745 AAAATAGAATTTTT-GGAAATTTGAGG-T
1 AAAATGGAATTTTTAGGAAGTTTGAGGTT
*
14459772 AAGATGGTAATTTTT-GTGAAGTT
1 AAAATGG-AATTTTTAG-GAAGTT
14459795 CTTTTGGAAA
Statistics
Matches: 334, Mismatches: 82, Indels: 86
0.67 0.16 0.17
Matches are distributed among these distances:
24 6 0.02
25 2 0.01
26 12 0.04
27 5 0.01
28 75 0.22
29 88 0.26
30 91 0.27
31 55 0.16
ACGTcount: A:0.33, C:0.02, G:0.28, T:0.36
Consensus pattern (29 bp):
AAAATGGAATTTTTAGGAAGTTTGAGGTT
Found at i:14459387 original size:59 final size:57
Alignment explanation
Indices: 14459301--14459785 Score: 419
Period size: 59 Copynumber: 8.3 Consensus size: 57
14459291 TTCGATGACA
* * * * *
14459301 GGGGCAAAATGGTAATTTTTAGG-AAGTTTGAGGTTAAAAATGGAATTTTTGGACATTC
1 GGGGTAAAATGGTAA-TTTTGGGAAAGTTTGGGGTCAAAAATGGAATTTTTGGA-ATTT
* * * *
14459359 GGGGTTAAAATGGTAGTTTTGGGAAAGTTT---AT--GAAATGGAATTTTTAGAAGTTTT
1 GGGG-TAAAATGGTAATTTTGGGAAAGTTTGGGGTCAAAAATGGAATTTTTGGAA--TTT
* * * ** *
14459414 AGGGTAAAATGGTAATTTTAGGAAAGTATGGGGTCAAAAATAAAATTTTTGGATGTTT
1 GGGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTCAAAAATGGAATTTTTGGA-ATTT
* * * *
14459472 GAGGGTAAAATGGTAATTTTGGGAAAGTTCGGGGTCAAAAATGGTATTTTTTTGAAGTCTA
1 G-GGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTCAAAAATGG-AATTTTTGGAA-T-TT
* * * * *
14459533 AGGGTAAAATGGTAATATTTAGG-AAGTTTGGAGTCAAAAATGGAATTTTTAGACATTCG
1 GGGGTAAAATGGTAAT-TTTGGGAAAGTTTGGGGTCAAAAATGGAATTTTTGGA-ATT-T
* * *
14459592 GGGGTGAAATGGTAATTTTGGGAAAGTTTGGGGTTAAAAATAGAATTTTTGGAAGTTT
1 GGGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTCAAAAATGGAATTTTTGGAA-TTT
* * * *
14459650 AGGGGTAAAATGGTAATTTT-GGTAAGTTTAGGGTGAAAAATGGAATTTTTTGATATTT
1 -GGGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTCAAAAATGGAATTTTTGGA-ATTT
* * * *
14459708 GGGGGTAGAATGGTATTTTTGGGAAAGTTCGGGGTCAAAAATAGAATTTTTGGAAATTT
1 -GGGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTCAAAAATGGAATTTTTGG-AATTT
* *
14459767 GAGGTAAGATGGTAATTTT
1 GGGGTAAAATGGTAATTTT
14459786 TGTGAAGTTC
Statistics
Matches: 343, Mismatches: 61, Indels: 46
0.76 0.14 0.10
Matches are distributed among these distances:
53 1 0.00
54 37 0.11
55 5 0.01
56 1 0.00
57 1 0.00
58 83 0.24
59 165 0.48
60 44 0.13
61 6 0.02
ACGTcount: A:0.33, C:0.02, G:0.29, T:0.36
Consensus pattern (57 bp):
GGGGTAAAATGGTAATTTTGGGAAAGTTTGGGGTCAAAAATGGAATTTTTGGAATTT
Found at i:14459676 original size:29 final size:27
Alignment explanation
Indices: 14459301--14459794 Score: 177
Period size: 29 Copynumber: 17.0 Consensus size: 27
14459291 TTCGATGACA
*
14459301 GGGGCAAAATGGTAATTTTTAGGAAGTTT
1 GGGGTAAAATGGTAA-TTTT-GGAAGTTT
* *
14459330 GAGGTTAAAAATGG-AATTTTTGGACA-TTC
1 G-GGGT-AAAATGGTAA-TTTTGGA-AGTTT
*
14459359 GGGGTTAAAATGGTAGTTTTGGGAAAGTTT
1 GGGG-TAAAATGGTAATTTT-GG-AAGTTT
* * *
14459389 ---ATGAAATGG-AATTTTTAGAAGTTTT
1 GGGGTAAAATGGTAA-TTTTGGAAG-TTT
* *
14459414 AGGGTAAAATGGTAATTTTAGGAAAGTAT
1 GGGGTAAAATGGTAATTTT-GG-AAGTTT
** *
14459443 GGGGTCAAAAAT-AAAATTTTTGGATGTTT
1 GGGGT--AAAATGGTAA-TTTTGGAAGTTT
*
14459472 GAGGGTAAAATGGTAATTTTGGGAAAGTTC
1 G-GGGTAAAATGGTAATTTT-GG-AAGTTT
* * *
14459502 GGGGTCAAAAATGGTATTTTTTTGAAGTCTA
1 GGGGT--AAAATGGTA-ATTTTGGAAGT-TT
*
14459533 AGGGTAAAATGGTAATATTTAGGAAGTTT
1 GGGGTAAAATGGTAAT-TTT-GGAAGTTT
* * *
14459562 GGAGTCAAAAATGG-AATTTTTAGACA-TTCG
1 GGGGT--AAAATGGTAA-TTTTGGA-AGTT-T
*
14459592 GGGGTGAAATGGTAATTTTGGGAAAGTTT
1 GGGGTAAAATGGTAATTTT-GG-AAGTTT
*
14459621 GGGGTTAAAAATAG-AATTTTTGGAAGTTT
1 GGGG-T-AAAATGGTAA-TTTTGGAAGTTT
14459650 AGGGGTAAAATGGTAATTTTGGTAAGTTT
1 -GGGGTAAAATGGTAATTTTGG-AAGTTT
* *
14459679 AGGGTGAAAAATGG-AATTTTTTGATA-TTT
1 -GGG-GTAAAATGGTAA-TTTTGGA-AGTTT
* * *
14459708 GGGGGTAGAATGGTATTTTTGGGAAAGTTC
1 -GGGGTAAAATGGTAATTTT-GG-AAGTTT
* *
14459738 GGGGTCAAAAATAG-AATTTTTGGAAATTT
1 GGGGT--AAAATGGTAA-TTTTGGAAGTTT
* *
14459767 GAGGTAAGATGGTAATTTTTGTGAAGTT
1 GGGGTAAAATGGTAA-TTTTG-GAAGTT
14459795 CTTTTGGAAA
Statistics
Matches: 351, Mismatches: 58, Indels: 112
0.67 0.11 0.21
Matches are distributed among these distances:
24 3 0.01
25 5 0.01
26 11 0.03
27 5 0.01
28 75 0.21
29 111 0.32
30 80 0.23
31 57 0.16
32 4 0.01
ACGTcount: A:0.33, C:0.02, G:0.29, T:0.36
Consensus pattern (27 bp):
GGGGTAAAATGGTAATTTTGGAAGTTT
Found at i:14460987 original size:3 final size:3
Alignment explanation
Indices: 14460979--14461032 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
14460969 CGACTGCCTT
* ** * *
14460979 TTA TTA TTA TTA TTA TTA CTA TTA AGA ATA GTA TTA TTA TTA TTGA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
14461025 TTA TTA TT
1 TTA TTA TT
14461033 GATACTATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:14461229 original size:6 final size:6
Alignment explanation
Indices: 14461202--14461271 Score: 51
Period size: 6 Copynumber: 12.2 Consensus size: 6
14461192 GACTTTGTTT
* * *
14461202 ATTTAA ATTTAGA A--TAA TTTTAA ATTTAA ATATAA ATTTAA A-ATAA
1 ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
*
14461248 ATTT-A ATCTTAA A-ATAA ATTTAA A
1 ATTTAA AT-TTAA ATTTAA ATTTAA A
14461272 ATGGATTTAG
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
4 1 0.02
5 13 0.27
6 31 0.63
7 4 0.08
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (6 bp):
ATTTAA
Found at i:14461240 original size:29 final size:28
Alignment explanation
Indices: 14461205--14461273 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 28
14461195 TTTGTTTATT
* *
14461205 TAAATTTAGAATAATTTTAAAT-TTAAATA
1 TAAATTTAAAATAAATTT-AATCTTAAA-A
14461234 TAAATTTAAAATAAATTTAATCTTAAAA
1 TAAATTTAAAATAAATTTAATCTTAAAA
14461262 TAAATTTAAAAT
1 TAAATTTAAAAT
14461274 GGATTTAGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 16 0.43
29 21 0.57
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (28 bp):
TAAATTTAAAATAAATTTAATCTTAAAA
Found at i:14461241 original size:18 final size:17
Alignment explanation
Indices: 14461202--14461271 Score: 71
Period size: 17 Copynumber: 4.4 Consensus size: 17
14461192 GACTTTGTTT
*
14461202 ATTTAAATTTAGAATAA
1 ATTTAAATTTAAAATAA
*
14461219 TTTTAAATTT-AAAT--
1 ATTTAAATTTAAAATAA
14461233 A--TAAATTTAAAATAA
1 ATTTAAATTTAAAATAA
14461248 ATTT-AATCTTAAAATAA
1 ATTTAAAT-TTAAAATAA
14461265 ATTTAAA
1 ATTTAAA
14461272 ATGGATTTAG
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
12 7 0.16
13 4 0.09
15 1 0.02
16 6 0.14
17 23 0.53
18 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:14461273 original size:11 final size:12
Alignment explanation
Indices: 14461222--14461253 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
14461212 AGAATAATTT
14461222 TAAATTTAAATA
1 TAAATTTAAATA
14461234 TAAATTTAAA-A
1 TAAATTTAAATA
14461245 TAAATTTAA
1 TAAATTTAA
14461254 TCTTAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAATTTAAATA
Found at i:14475903 original size:22 final size:18
Alignment explanation
Indices: 14475878--14475922 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 18
14475868 CTCATTTTCC
14475878 TAAAATAGCCCAACACCCAAAA
1 TAAAATA-CCCAA-A-CC-AAA
14475900 TAAAATACCCAAACCAAA
1 TAAAATACCCAAACCAAA
14475918 TAAAA
1 TAAAA
14475923 CCCATACCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.35
19 2 0.09
20 1 0.04
21 5 0.22
22 7 0.30
ACGTcount: A:0.60, C:0.27, G:0.02, T:0.11
Consensus pattern (18 bp):
TAAAATACCCAAACCAAA
Found at i:14479401 original size:20 final size:20
Alignment explanation
Indices: 14479346--14479402 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
14479336 CTTAGTCAAA
**
14479346 TTGTTATTTTCTTTTTATTT
1 TTGTTATTTTCTTTTTATAG
*
14479366 TTGTTTATATT-TTTTTATAAG
1 TTG-TTATTTTCTTTTTAT-AG
14479387 TTGTTATTTTCTTTTT
1 TTGTTATTTTCTTTTT
14479403 GACTAATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.14, C:0.04, G:0.07, T:0.75
Consensus pattern (20 bp):
TTGTTATTTTCTTTTTATAG
Found at i:14480372 original size:11 final size:11
Alignment explanation
Indices: 14480356--14480380 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14480346 TTTATTTGAC
14480356 TATTTTTATTT
1 TATTTTTATTT
14480367 TATTTTTATTT
1 TATTTTTATTT
14480378 TAT
1 TAT
14480381 CTTAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (11 bp):
TATTTTTATTT
Found at i:14485712 original size:18 final size:22
Alignment explanation
Indices: 14485670--14485714 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 22
14485660 CTCATTTTCC
14485670 TAAAATAGCCCAACAGCCAAAA
1 TAAAATAGCCCAACAGCCAAAA
14485692 TAAAATA-CCCAA-A-CC-AAA
1 TAAAATAGCCCAACAGCCAAAA
14485710 TAAAA
1 TAAAA
14485715 CCCATACCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.35
19 2 0.09
20 1 0.04
21 5 0.22
22 7 0.30
ACGTcount: A:0.60, C:0.24, G:0.04, T:0.11
Consensus pattern (22 bp):
TAAAATAGCCCAACAGCCAAAA
Found at i:14539862 original size:58 final size:58
Alignment explanation
Indices: 14539752--14539921 Score: 218
Period size: 58 Copynumber: 2.9 Consensus size: 58
14539742 AAAATCGGGA
* * * * * *
14539752 TCAAAAATAGAATTTTTGGACATTCG-GGAGTAAAATAGTAATTTTTGAAAGTTTTGGGG
1 TCAAAAATGGAATATTTGGA-ATTTGAGGGGCAAAAT-GTAATTTTTGGAAGTTTTGGGG
*
14539811 TCAAAAATGGAAT-TTTGGAAGTTTGAGGGTCAAAATGTAATTTTTGGAAGTTTTGGGG
1 TCAAAAATGGAATATTTGGAA-TTTGAGGGGCAAAATGTAATTTTTGGAAGTTTTGGGG
*
14539869 TCAAAAATGGAATATTTGGAATTTTAGGGGCAATAATGTAATTTTTGGAAGTT
1 TCAAAAATGGAATATTTGGAATTTGAGGGGCAA-AATGTAATTTTTGGAAGTT
14539922 CGAGGGTATA
Statistics
Matches: 99, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
57 1 0.01
58 53 0.54
59 45 0.45
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.36
Consensus pattern (58 bp):
TCAAAAATGGAATATTTGGAATTTGAGGGGCAAAATGTAATTTTTGGAAGTTTTGGGG
Found at i:14539935 original size:29 final size:28
Alignment explanation
Indices: 14539762--14539951 Score: 165
Period size: 29 Copynumber: 6.5 Consensus size: 28
14539752 TCAAAAATAG
*
14539762 AATTTTTGGACA-TTCGGGAGT-AAAATAGT
1 AATTTTTGGA-AGTTTGGG-GTCAAAAT-GT
* *
14539791 AATTTTTGAAAGTTTTGGGGTCAAAAATGG
1 AATTTTTGGAAG-TTTGGGGTC-AAAATGT
14539821 AA-TTTTGGAAGTTTGAGGGTCAAAATGT
1 AATTTTTGGAAGTTTG-GGGTCAAAATGT
*
14539849 AATTTTTGGAAGTTTTGGGGTCAAAAATGG
1 AATTTTTGGAAG-TTTGGGGTC-AAAATGT
* *
14539879 AATATTTGGAATTTTAGGGG-CAATAATGT
1 AATTTTTGGAAGTTT-GGGGTCAA-AATGT
*
14539908 AATTTTTGGAAGTTCGAGGGT-ATAAATGT
1 AATTTTTGGAAGTTTG-GGGTCA-AAATGT
*
14539937 AATTTTTAGAAGTTT
1 AATTTTTGGAAGTTT
14539952 CAACGCCAAA
Statistics
Matches: 134, Mismatches: 14, Indels: 26
0.77 0.08 0.15
Matches are distributed among these distances:
28 16 0.12
29 80 0.60
30 33 0.25
31 5 0.04
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.38
Consensus pattern (28 bp):
AATTTTTGGAAGTTTGGGGTCAAAATGT
Found at i:14589116 original size:841 final size:841
Alignment explanation
Indices: 14587495--14589132 Score: 2835
Period size: 841 Copynumber: 1.9 Consensus size: 841
14587485 TTCAATCATT
* *
14587495 TAGTTGTCATTTTCCTTTTTAAAACGTGATAAGTACGATAAAAAGTTTTTAACAATAAAAAGATT
1 TAGTTGTCATTTTCCTTTTTAAAACGTGATAAGTACGATAAAAAGATTTTAACAAAAAAAAGATT
* *
14587560 TTATGATTTTACGCTTCGCATAATTATTTCAATATTGTTGCACATACATATCACCAGTAGAGATA
66 TTATGATTTTACGCTTCGCATAATTATTTCAATATTGTGGCACATACATATCACCAGTAGAGAAA
** * * *
14587625 TCTAGTATAGCTCATTTGATTTGGAGATAGGCGTGCGTTTTTAACCGTCACCATGACTAGAACAA
131 TCTAGTATAGCTCATTCAATTTGGAGATAGACGTCCATTTTTAACCGTCACCATGACTAGAACAA
* * * *
14587690 ATATAACTACGAAAAGGTAGAAAAATGGGATAACACACATAACAAATATGTGTGTCTGTAACGCA
196 ATATAACTACAAAAAGGTAGAAAAATAGGACAACACACATAACAAATATGTGTGCCTGTAACGCA
*
14587755 AGTGCTCCCGTTGCTTTATTCATATGATATTTCCTGTATATTATGGTGCTAGTTTTTGGTTTGTA
261 AGTGCTCACGTTGCTTTATTCATATGATATTTCCTGTATATTATGGTGCTAGTTTTTGGTTTGTA
14587820 GTGGATGTAATAGTACATTCCTAGTTTCAATGCAGAAACACAATTATGACATAACCGTCTTTATT
326 GTGGATGTAATAGTACATTCCTAGTTTCAATGCAGAAACACAATTATGACATAACCGTCTTTATT
*
14587885 GAACCTTATTTTCGTTAGCCATTTAATGAAATTTAAGAATAGGAAAAAGGAAGCACAGATGTGTG
391 GAACCTTATTTTCGTTAGCCATTTAATGAAATTTAAGAATAGGAAAAAGGAAGCACAGATGTGCG
14587950 TGTTTGAATTAATATGTAGATTTGTGTTAATTAAAATTAAAGCTTATTAAACTAAAACATTAAAT
456 TGTTTGAATTAATATGTAGATTTGTGTTAATTAAAATTAAAGCTTATTAAACTAAAACATTAAAT
**
14588015 GCTCTATTTTGTTGCAACGTATTCTAGTTCCATGTGGTCATAACACTTGTTATAAATGCAGGTTT
521 GCTCTATTTTGTTGCAACGTATTCTAGTTCCATGTGGTCATAACACTTCCTATAAATGCAGGTTT
*
14588080 TTTCCCCTTCTATTCTTGTTCGAAATTAATTTTACGAACAAAATTCAAGTAGAAACATCAAATTC
586 TTTCCCCTTCTATTCTTGTTCGAAATTAATTTTACGAACAAAATTCAAGTAGAAACATCAAATAC
* *
14588145 ACACAATATGGCATGCCTTAATGTTAATTCCGTCCTAGTGGTTTTATTCTTAACTTGCGTGGTAG
651 ACACAATATGGCAAGCCTTAATGTTAATTCCGTCCAAGTGGTTTTATTCTTAACTTGCGTGGTAG
* *
14588210 TAATGGCTATGAAGGAGAATGACCAGATTATTAAGGAAAATAATTGTGAAACTAAAATGGGTTGG
716 TAATGGCTAAGAAGGAGAACGACCAGATTATTAAGGAAAATAATTGTGAAACTAAAATGGGTTGG
*
14588275 CCTTGTGTTCAAGAAACATCAAATTCACACAATATGGCATGCCTTAATGTTAATTCCGTCC
781 CCCTGTGTTCAAGAAACATCAAATTCACACAATATGGCATGCCTTAATGTTAATTCCGTCC
*
14588336 TAGTTGTCATTTTCCTTTTTAAAACGTGATAAGTGCGATAAAAAGATTTTAACAAAAAAAAGATT
1 TAGTTGTCATTTTCCTTTTTAAAACGTGATAAGTACGATAAAAAGATTTTAACAAAAAAAAGATT
* * * *
14588401 TTATGATTTTACGCTTCGCATAATTATTTCCATTTTGTGGCACATACATATCACTAGTATAGAAA
66 TTATGATTTTACGCTTCGCATAATTATTTCAATATTGTGGCACATACATATCACCAGTAGAGAAA
* ** **
14588466 TCTAGTATAGCTCATTCAATTTGGAGATATACGTCCATTTTTAACCGTTGCCATGACTAGAACTT
131 TCTAGTATAGCTCATTCAATTTGGAGATAGACGTCCATTTTTAACCGTCACCATGACTAGAACAA
* * * *
14588531 ATATAACTACAAAAAGTTAGAAAAATAGGACGACACACATAACAATTATGTGTGCCTGTAATGCA
196 ATATAACTACAAAAAGGTAGAAAAATAGGACAACACACATAACAAATATGTGTGCCTGTAACGCA
14588596 AGTGCTCACGTTGCTTTATTCATATGATATTTCCTGTATATTATGGTGCTAGTTTTTGGTTTGTA
261 AGTGCTCACGTTGCTTTATTCATATGATATTTCCTGTATATTATGGTGCTAGTTTTTGGTTTGTA
14588661 GTGGATGTAATAGTACATTCCTAGTTTCAATGCAGAAACACAATTATGACATAACCGTCTTTATT
326 GTGGATGTAATAGTACATTCCTAGTTTCAATGCAGAAACACAATTATGACATAACCGTCTTTATT
* *
14588726 GAACCTTATTTTCGTTATCCATTTAATGATATTTAAGAATAGGAAAAAGGAAGCACAGATGTGCG
391 GAACCTTATTTTCGTTAGCCATTTAATGAAATTTAAGAATAGGAAAAAGGAAGCACAGATGTGCG
* *
14588791 TGTTTGAATTAATATGTAGATTTGTGTTAATTAAAATTAATGCTTATTAAACTGAAACATTAAAT
456 TGTTTGAATTAATATGTAGATTTGTGTTAATTAAAATTAAAGCTTATTAAACTAAAACATTAAAT
* *
14588856 GCTTTATTTTGTTGCAACGTATTCTAGTTCCATGTGGTCATAACACTTCCTCTAAATGCAGGTTT
521 GCTCTATTTTGTTGCAACGTATTCTAGTTCCATGTGGTCATAACACTTCCTATAAATGCAGGTTT
* *
14588921 TTTCCCGTTCTATTCTTGTTCGAAATTAATTTTACGAACAAAATTGAAGTAGAAACATCAAATAC
586 TTTCCCCTTCTATTCTTGTTCGAAATTAATTTTACGAACAAAATTCAAGTAGAAACATCAAATAC
* * *
14588986 ACACATTATGGCAAGCCTTAATGTTTATTCTGTCCAAGTGGTTTTATTCTTAACTTGCGTGGTAG
651 ACACAATATGGCAAGCCTTAATGTTAATTCCGTCCAAGTGGTTTTATTCTTAACTTGCGTGGTAG
*
14589051 TAATGGCTAAGAAGGAGAACGACTAGATTATTAAGGAAAATAATTGTGAAACTAAAATGGGTTGG
716 TAATGGCTAAGAAGGAGAACGACCAGATTATTAAGGAAAATAATTGTGAAACTAAAATGGGTTGG
14589116 CCCTGTGTTCAAGAAAC
781 CCCTGTGTTCAAGAAAC
14589133 TTTCACGAGT
Statistics
Matches: 748, Mismatches: 49, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
841 748 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (841 bp):
TAGTTGTCATTTTCCTTTTTAAAACGTGATAAGTACGATAAAAAGATTTTAACAAAAAAAAGATT
TTATGATTTTACGCTTCGCATAATTATTTCAATATTGTGGCACATACATATCACCAGTAGAGAAA
TCTAGTATAGCTCATTCAATTTGGAGATAGACGTCCATTTTTAACCGTCACCATGACTAGAACAA
ATATAACTACAAAAAGGTAGAAAAATAGGACAACACACATAACAAATATGTGTGCCTGTAACGCA
AGTGCTCACGTTGCTTTATTCATATGATATTTCCTGTATATTATGGTGCTAGTTTTTGGTTTGTA
GTGGATGTAATAGTACATTCCTAGTTTCAATGCAGAAACACAATTATGACATAACCGTCTTTATT
GAACCTTATTTTCGTTAGCCATTTAATGAAATTTAAGAATAGGAAAAAGGAAGCACAGATGTGCG
TGTTTGAATTAATATGTAGATTTGTGTTAATTAAAATTAAAGCTTATTAAACTAAAACATTAAAT
GCTCTATTTTGTTGCAACGTATTCTAGTTCCATGTGGTCATAACACTTCCTATAAATGCAGGTTT
TTTCCCCTTCTATTCTTGTTCGAAATTAATTTTACGAACAAAATTCAAGTAGAAACATCAAATAC
ACACAATATGGCAAGCCTTAATGTTAATTCCGTCCAAGTGGTTTTATTCTTAACTTGCGTGGTAG
TAATGGCTAAGAAGGAGAACGACCAGATTATTAAGGAAAATAATTGTGAAACTAAAATGGGTTGG
CCCTGTGTTCAAGAAACATCAAATTCACACAATATGGCATGCCTTAATGTTAATTCCGTCC
Found at i:14614771 original size:22 final size:18
Alignment explanation
Indices: 14614746--14614790 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 18
14614736 CTCATTTTCC
14614746 TAAAATAGCCCAACACCCAAAA
1 TAAAATA-CCCAA-A-CC-AAA
14614768 TAAAATACCCAAACCAAA
1 TAAAATACCCAAACCAAA
14614786 TAAAA
1 TAAAA
14614791 CCCATACCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.35
19 2 0.09
20 1 0.04
21 5 0.22
22 7 0.30
ACGTcount: A:0.60, C:0.27, G:0.02, T:0.11
Consensus pattern (18 bp):
TAAAATACCCAAACCAAA
Found at i:14621218 original size:15 final size:15
Alignment explanation
Indices: 14621198--14621243 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
14621188 TTCAATTTCT
14621198 TTTATTATTTAAATA
1 TTTATTATTTAAATA
*
14621213 TTTATTA-TTATAT-
1 TTTATTATTTAAATA
14621226 TATTATTATTTCAAATA
1 T-TTATTATTT-AAATA
14621243 T
1 T
14621244 ATTAATGTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 1 0.04
14 11 0.44
15 9 0.36
16 3 0.12
17 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTATTATTTAAATA
Found at i:14622027 original size:6 final size:6
Alignment explanation
Indices: 14622002--14622070 Score: 56
Period size: 6 Copynumber: 12.0 Consensus size: 6
14621992 GCTTTTTTTT
* * *
14622002 TTTAAA TTTGAAA -ATAAA TTTAAA TTTAAA TTCAAA -TTAAA -ATAAA
1 TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
14622048 TCTAAA TTTAAA -ATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA
14622071 AGGGCCGATC
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
5 15 0.30
6 32 0.64
7 3 0.06
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (6 bp):
TTTAAA
Found at i:14622031 original size:12 final size:11
Alignment explanation
Indices: 14622003--14622070 Score: 66
Period size: 11 Copynumber: 6.0 Consensus size: 11
14621993 CTTTTTTTTT
14622003 TTAAATTTGAAA
1 TTAAATTT-AAA
*
14622015 ATAAATTTAAA
1 TTAAATTTAAA
*
14622026 TTTAAATTCAAA
1 -TTAAATTTAAA
*
14622038 TTAAA-ATAAA
1 TTAAATTTAAA
14622048 TCTAAATTTAAA
1 T-TAAATTTAAA
*
14622060 ATAAATTTAAA
1 TTAAATTTAAA
14622071 AGGGCCGATC
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
10 4 0.09
11 22 0.48
12 20 0.43
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:14622069 original size:28 final size:28
Alignment explanation
Indices: 14622004--14622071 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
14621994 TTTTTTTTTT
* *
14622004 TAAATTTGAAAATAAATTTAAATTTAAAT
1 TAAATTT-AAAATAAATCTAAATTTAAAA
14622033 TCAAA-TTAAAATAAATCTAAATTTAAAA
1 T-AAATTTAAAATAAATCTAAATTTAAAA
14622061 TAAATTTAAAA
1 TAAATTTAAAA
14622072 GGGCCGATCA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 3 0.09
28 26 0.74
29 3 0.09
30 3 0.09
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (28 bp):
TAAATTTAAAATAAATCTAAATTTAAAA
Found at i:14623123 original size:20 final size:23
Alignment explanation
Indices: 14623082--14623123 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 23
14623072 CAATAAAATA
14623082 AAGCATTTAATGTTTCAATTAAT
1 AAGCATTTAATGTTTCAATTAAT
14623105 AAGCA-TTAAT-TTT-AATTAA
1 AAGCATTTAATGTTTCAATTAA
14623124 CACAAATCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 3 0.16
22 5 0.26
23 5 0.26
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (23 bp):
AAGCATTTAATGTTTCAATTAAT
Found at i:14625262 original size:6 final size:6
Alignment explanation
Indices: 14625225--14625294 Score: 51
Period size: 6 Copynumber: 12.2 Consensus size: 6
14625215 CTAAATCCAT
* * *
14625225 TTTAAA TTT-AT TTTAAGA -TTAAA TTT-AT TTTAAA TTTATA TTTAAA
1 TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
14625271 TTTAAA ATT--A TTCTAAA TTTAAA T
1 TTTAAA TTTAAA TT-TAAA TTTAAA T
14625295 AAACAAAGTC
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
4 2 0.04
5 10 0.20
6 34 0.69
7 3 0.06
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:14625266 original size:13 final size:12
Alignment explanation
Indices: 14625243--14625274 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
14625233 TATTTTAAGA
14625243 TTAAATTTAT-T
1 TTAAATTTATAT
14625254 TTAAATTTATAT
1 TTAAATTTATAT
14625266 TTAAATTTA
1 TTAAATTTA
14625275 AAATTATTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTAAATTTATAT
Found at i:14625267 original size:17 final size:18
Alignment explanation
Indices: 14625225--14625268 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
14625215 CTAAATCCAT
14625225 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTTTAAGA
14625243 -TTAAATTTATTTTAA-A
1 TTTAAATTTATTTTAAGA
*
14625259 TTTATATTTA
1 TTTAAATTTA
14625269 AATTTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 1 0.04
17 23 0.96
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TTTAAATTTATTTTAAGA
Found at i:14625276 original size:18 final size:17
Alignment explanation
Indices: 14625225--14625294 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 17
14625215 CTAAATCCAT
*
14625225 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTCTAA-A
*
14625243 -TTAAATTTATTTTAAA
1 TTTAAATTTATTCTAAA
14625259 TTT--A--TATT-TAAA
1 TTTAAATTTATTCTAAA
*
14625271 TTTAAAATTATTCTAAA
1 TTTAAATTTATTCTAAA
14625288 TTTAAAT
1 TTTAAAT
14625295 AAACAAAGTC
Statistics
Matches: 45, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
12 7 0.16
13 4 0.09
14 1 0.02
15 1 0.02
16 5 0.11
17 27 0.60
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTCTAAA
Found at i:14625281 original size:29 final size:28
Alignment explanation
Indices: 14625223--14625291 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 28
14625213 AACTAAATCC
*
14625223 ATTTTAAATTTATTTTAAGATTAAATTT
1 ATTTTAAATTTATTTTAAGATTAAAATT
14625251 ATTTTAAATTTATATTTAA-ATTTAAAATT
1 ATTTTAAATTTAT-TTTAAGA-TTAAAATT
*
14625280 ATTCTAAATTTA
1 ATTTTAAATTTA
14625292 AATAAACAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 14 0.38
29 23 0.62
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (28 bp):
ATTTTAAATTTATTTTAAGATTAAAATT
Found at i:14625470 original size:3 final size:3
Alignment explanation
Indices: 14625462--14625503 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
14625452 AAATAGTATC
* *
14625462 AAT AAT AAT CAAT AAT AAT AAT GAT AAT AAT AAA AAT AAT AA
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14625504 AAAGGCAGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:14626689 original size:29 final size:29
Alignment explanation
Indices: 14626640--14627152 Score: 131
Period size: 30 Copynumber: 17.5 Consensus size: 29
14626630 TGAACTGTTT
* * *
14626640 AAAAATCATATTTTGACCCCTCAACTTTTA
1 AAAAATTACATTTTGA-CCCTCAACTTTCA
* *
14626670 AAAAATTACATTTTGACCCTTGAACTTTCC
1 AAAAATTACATTTTGACCC-TCAACTTTCA
* *
14626700 AAAATTTACATTATTG-CCCTCGAGC-TTCA
1 AAAAATTACATT-TTGACCCTC-AACTTTCA
* * *
14626729 CAAAAATTACATTTT-ACCTTGAA-TTTCC
1 -AAAAATTACATTTTGACCCTCAACTTTCA
* *
14626757 AAAAATTCCATTTTTGACCC-CGAACTTTCC
1 AAAAATTACA-TTTTGACCCTC-AACTTTCA
* * * *
14626787 CAAAATTACCATTTT-ACCC-CAAATGTCC
1 AAAAATTA-CATTTTGACCCTCAACTTTCA
* * * *
14626815 AAAAATTCCATTTTTCACCCTGAACTTCCCA
1 AAAAATTACA-TTTTGACCCTCAACTT-TCA
*
14626846 AAAAA-TACCATTTT-ACCCCCAAACTTTC-
1 AAAAATTA-CATTTTGACCCTC-AACTTTCA
*
14626874 -AAAATT-C-TATTTGA-CCTCGAACTTTCC
1 AAAAATTACAT-TTTGACCCTC-AACTTTCA
* * *
14626901 CAAAATTACAATTTT-ACCCTCAGGC-TTCC
1 AAAAATTAC-ATTTTGACCCTCA-ACTTTCA
* * *
14626930 AAAAATT-CTATTTTTAACCTCAAACTTTCC
1 AAAAATTAC-ATTTTGACCCTC-AACTTTCA
* * * *
14626960 CAAAATTAGCATTTT-ACCCCCGAACATCCA
1 AAAAATTA-CATTTTGACCCTC-AACTTTCA
* * *
14626990 AAAATTTTA-TTTTTGACCC-CATACTTTCC
1 AAAA-ATTACATTTTGACCCTCA-ACTTTCA
* * * *
14627019 CAAAATTACCATTTT-ACCCTTAAAC-TACC
1 AAAAATTA-CATTTTGACCC-TCAACTTTCA
* * * *
14627048 AAAAATTCCATTTTTAACCCTAAACTTTCC
1 AAAAATTACA-TTTTGACCCTCAACTTTCA
* * *
14627078 CAAAATTACCATTTT-ACCCTCGAA-TGTCC
1 AAAAATTA-CATTTTGACCCTC-AACTTTCA
* * * *
14627107 AAAAATTCCATTTTTTA-CCTCGAACTTCCT
1 AAAAATTACA-TTTTGACCCTC-AACTTTCA
14627137 AAAAATTACCATTTTG
1 AAAAATTA-CATTTTG
14627153 CCCATGGCAT
Statistics
Matches: 364, Mismatches: 71, Indels: 96
0.69 0.13 0.18
Matches are distributed among these distances:
25 1 0.00
26 14 0.04
27 16 0.04
28 45 0.12
29 110 0.30
30 150 0.41
31 27 0.07
32 1 0.00
ACGTcount: A:0.34, C:0.27, G:0.04, T:0.35
Consensus pattern (29 bp):
AAAAATTACATTTTGACCCTCAACTTTCA
Found at i:14626962 original size:59 final size:59
Alignment explanation
Indices: 14626671--14627151 Score: 402
Period size: 59 Copynumber: 8.2 Consensus size: 59
14626661 CAACTTTTAA
* * * * * * *
14626671 AAAATTA-CATTTTGACCCT-TGAACTTTCCAAAATTTACATTATTGCCCTCGAGC-TTCACA
1 AAAATTACCATTTT-ACCCTCAG-AC-TTCCAAAAATTCCATTTTTGACCTCGAACTTTC-CC
* * * *
14626731 AAAATTA-CATTTTACCTTGA-ATTTCCAAAAATTCCATTTTTGACCCCGAACTTTCCC
1 AAAATTACCATTTTACCCTCAGACTTCCAAAAATTCCATTTTTGACCTCGAACTTTCCC
* *
14626788 AAAATTACCATTTTACCC-CA-AATGTCCAAAAATTCCATTTTTCACC-CTGAAC-TTCCC
1 AAAATTACCATTTTACCCTCAGACT-TCCAAAAATTCCATTTTTGACCTC-GAACTTTCCC
* * * * *
14626845 AAAAAATACCATTTTACCCCCAAACTTTC-AAAATT-C-TATTTGACCTCGAACTTTCCC
1 -AAAATTACCATTTTACCCTCAGACTTCCAAAAATTCCATTTTTGACCTCGAACTTTCCC
* * * * *
14626902 AAAATTACAATTTTACCCTCAGGCTTCCAAAAATTCTATTTTTAACCTCAAACTTTCCC
1 AAAATTACCATTTTACCCTCAGACTTCCAAAAATTCCATTTTTGACCTCGAACTTTCCC
* * * ** *
14626961 AAAATTAGCATTTTACCC-CCGAACATCCAAAAATTTTATTTTTGACC-CCATACTTTCCC
1 AAAATTACCATTTTACCCTCAG-ACTTCCAAAAATTCCATTTTTGACCTCGA-ACTTTCCC
* * * * *
14627020 AAAATTACCATTTTACCCTTAAACTACCAAAAATTCCATTTTTAACC-CTAAACTTTCCC
1 AAAATTACCATTTTACCCTCAGACTTCCAAAAATTCCATTTTTGACCTC-GAACTTTCCC
* * *
14627079 AAAATTACCATTTTACCCTC-GAATGTCCAAAAATTCCATTTTTTACCTCGAAC-TTCCTA
1 AAAATTACCATTTTACCCTCAGACT-TCCAAAAATTCCATTTTTGACCTCGAACTTTCC-C
14627138 AAAATTACCATTTT
1 AAAATTACCATTTT
14627152 GCCCATGGCA
Statistics
Matches: 347, Mismatches: 54, Indels: 41
0.79 0.12 0.09
Matches are distributed among these distances:
56 33 0.10
57 53 0.15
58 71 0.20
59 173 0.50
60 17 0.05
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.35
Consensus pattern (59 bp):
AAAATTACCATTTTACCCTCAGACTTCCAAAAATTCCATTTTTGACCTCGAACTTTCCC
Found at i:14627120 original size:118 final size:117
Alignment explanation
Indices: 14626731--14627151 Score: 461
Period size: 118 Copynumber: 3.6 Consensus size: 117
14626721 GAGCTTCACA
**
14626731 AAAATTA-CATTTTA-CCTTGAATTTCCAAAAATTCCATTTTTGACC-CCGAACTTTCCCAAAAT
1 AAAATTACCATTTTACCCCCGAA-TTCCAAAAATTCCATTTTTGACCTCC-AACTTTCCCAAAAT
* *
14626793 TACCATTTTACCC-CAAA-TGTCCAAAAATTCCATTTTTCACCCTGAAC-TTCCC
64 TACCATTTTACCCTCAAACT-TCCAAAAATTCCATTTTTAACCCTAAACTTTCCC
* * * * *
14626845 AAAAAATACCATTTTACCCCCAAACTTTC-AAAATT-C-TATTTGACCTCGAACTTTCCCAAAAT
1 -AAAATTACCATTTTACCCCCGAA-TTCCAAAAATTCCATTTTTGACCTCCAACTTTCCCAAAAT
* ** *
14626907 TACAATTTTACCCTCAGGCTTCCAAAAATTCTATTTTTAA-CCTCAAACTTTCCC
64 TACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTAACCCT-AAACTTTCCC
* * **
14626961 AAAATTAGCATTTTACCCCCGAACATCCAAAAATTTTATTTTTGACC-CCATACTTTCCCAAAAT
1 AAAATTACCATTTTACCCCCGAA-TTCCAAAAATTCCATTTTTGACCTCCA-ACTTTCCCAAAAT
* *
14627025 TACCATTTTACCCTTAAACTACCAAAAATTCCATTTTTAACCCTAAACTTTCCC
64 TACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTAACCCTAAACTTTCCC
* * * *
14627079 AAAATTACCATTTTACCCTCGAATGTCCAAAAATTCCATTTTTTACCTCGAAC-TTCCTAAAAAT
1 AAAATTACCATTTTACCCCCGAAT-TCCAAAAATTCCATTTTTGACCTCCAACTTTCC-CAAAAT
14627143 TACCATTTT
64 TACCATTTT
14627152 GCCCATGGCA
Statistics
Matches: 255, Mismatches: 36, Indels: 27
0.80 0.11 0.08
Matches are distributed among these distances:
114 37 0.15
115 54 0.21
116 25 0.10
117 13 0.05
118 121 0.47
119 5 0.02
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.34
Consensus pattern (117 bp):
AAAATTACCATTTTACCCCCGAATTCCAAAAATTCCATTTTTGACCTCCAACTTTCCCAAAATTA
CCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTAACCCTAAACTTTCCC
Found at i:14641289 original size:6 final size:6
Alignment explanation
Indices: 14641252--14641321 Score: 51
Period size: 6 Copynumber: 12.2 Consensus size: 6
14641242 CTAAATCCAT
* * *
14641252 TTTAAA TTT-AT TTTAAGA -TTAAA TTT-AT TTTAAA TTTATA TTTAAA
1 TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
14641298 TTTAAA ATT--A TTCTAAA TTTAAA T
1 TTTAAA TTTAAA TT-TAAA TTTAAA T
14641322 AAACAAAGTC
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
4 2 0.04
5 10 0.20
6 34 0.69
7 3 0.06
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:14641293 original size:13 final size:12
Alignment explanation
Indices: 14641270--14641301 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
14641260 TATTTTAAGA
14641270 TTAAATTTAT-T
1 TTAAATTTATAT
14641281 TTAAATTTATAT
1 TTAAATTTATAT
14641293 TTAAATTTA
1 TTAAATTTA
14641302 AAATTATTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTAAATTTATAT
Found at i:14641294 original size:17 final size:18
Alignment explanation
Indices: 14641252--14641295 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
14641242 CTAAATCCAT
14641252 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTTTAAGA
14641270 -TTAAATTTATTTTAA-A
1 TTTAAATTTATTTTAAGA
*
14641286 TTTATATTTA
1 TTTAAATTTA
14641296 AATTTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 1 0.04
17 23 0.96
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TTTAAATTTATTTTAAGA
Found at i:14641303 original size:18 final size:17
Alignment explanation
Indices: 14641252--14641321 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 17
14641242 CTAAATCCAT
*
14641252 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTCTAA-A
*
14641270 -TTAAATTTATTTTAAA
1 TTTAAATTTATTCTAAA
14641286 TTT--A--TATT-TAAA
1 TTTAAATTTATTCTAAA
*
14641298 TTTAAAATTATTCTAAA
1 TTTAAATTTATTCTAAA
14641315 TTTAAAT
1 TTTAAAT
14641322 AAACAAAGTC
Statistics
Matches: 45, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
12 7 0.16
13 4 0.09
14 1 0.02
15 1 0.02
16 5 0.11
17 27 0.60
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTCTAAA
Found at i:14641308 original size:29 final size:28
Alignment explanation
Indices: 14641250--14641318 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 28
14641240 AACTAAATCC
*
14641250 ATTTTAAATTTATTTTAAGATTAAATTT
1 ATTTTAAATTTATTTTAAGATTAAAATT
14641278 ATTTTAAATTTATATTTAA-ATTTAAAATT
1 ATTTTAAATTTAT-TTTAAGA-TTAAAATT
*
14641307 ATTCTAAATTTA
1 ATTTTAAATTTA
14641319 AATAAACAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 14 0.38
29 23 0.62
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (28 bp):
ATTTTAAATTTATTTTAAGATTAAAATT
Found at i:14641499 original size:3 final size:3
Alignment explanation
Indices: 14641491--14641535 Score: 63
Period size: 3 Copynumber: 14.7 Consensus size: 3
14641481 AAATAGTATC
* *
14641491 AAT AAT AAT CAAT AAT AAT AAT AAT GAT AAT AAT AAA AAT AAT AA
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14641536 AAAGGCAGTC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:14641504 original size:19 final size:16
Alignment explanation
Indices: 14641477--14641536 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 16
14641467 AAAACTTATT
14641477 TAATAAATAGTATCAATAA
1 TAATAAATA--AT-AATAA
*
14641496 TAATCAATAATAATAA
1 TAATAAATAATAATAA
*
14641512 TAATGATAATAATAAAAA
1 TAAT-A-AATAATAATAA
14641530 TAATAAA
1 TAATAAA
14641537 AAGGCAGTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
16 11 0.31
17 3 0.08
18 14 0.39
19 8 0.22
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (16 bp):
TAATAAATAATAATAA
Found at i:14642741 original size:30 final size:30
Alignment explanation
Indices: 14642664--14642726 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
14642654 TAAAAATCAT
* *
14642664 ATTTTGACCCTTAAACTTTCCAAGAATTAC
1 ATTTTGACCCCTGAACTTTCCAAGAATTAC
14642694 ATTTTGACCCCTGAACTTTCCAA-AATTTAC
1 ATTTTGACCCCTGAACTTTCCAAGAA-TTAC
14642724 ATT
1 ATT
14642727 ATTGCACTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 28 0.93
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (30 bp):
ATTTTGACCCCTGAACTTTCCAAGAATTAC
Found at i:14642837 original size:59 final size:58
Alignment explanation
Indices: 14642746--14643112 Score: 309
Period size: 59 Copynumber: 6.3 Consensus size: 58
14642736 GAACTTCACA
* * * * * *
14642746 AAAATTACCACTTTAACTCGAATTTCCAAAAATTCTATTTTTGACCCCGAACTTTCCC
1 AAAATTACCATTTTACCCCCAAATTCCAAAAATTCCATTTTTGACCCCGAACTTTCCC
* * * * * *
14642804 ATAATTACCATTCTACCCCCAAATGTCCAAAAATTCCATTTTTCACCCTGAACTTGCCA
1 AAAATTACCATTTTACCCCCAAAT-TCCAAAAATTCCATTTTTGACCCCGAACTTTCCC
* * * * *
14642863 AAAATTACCATTATACCCCCAGACTTCCAAAAATTCTATTTTTGACTCCAAAC-TTCCC
1 AAAATTACCATTTTACCCCCA-AATTCCAAAAATTCCATTTTTGACCCCGAACTTTCCC
** *
14642921 AAATATTACCATTTTACCCTTAGACA-TCCAAAAATTCCATTTTTGACCCCGAACTTTCCT
1 AAA-ATTACCATTTTACCCCCA-A-ATTCCAAAAATTCCATTTTTGACCCCGAACTTTCCC
** * * **
14642981 AAAATTACCATTTTACCCTTAAACTTTCAATAATTCCA--TTT-A--CTAAACTTTCCC
1 AAAATTACCATTTTACCCCCAAA-TTCCAAAAATTCCATTTTTGACCCCGAACTTTCCC
* * * * * * *
14643035 AAAATTACCATTTTAACCCCGAATGTCAAAAAATTCCATTTTTAACCTCAAAC-TTCCTA
1 AAAATTACCATTTTACCCCCAAAT-TCCAAAAATTCCATTTTTGACCCCGAACTTTCC-C
14643094 AAAATTACCATTTTACCCC
1 AAAATTACCATTTTACCCC
14643113 TGGCATCGAA
Statistics
Matches: 249, Mismatches: 46, Indels: 27
0.77 0.14 0.08
Matches are distributed among these distances:
53 1 0.00
54 38 0.15
56 4 0.02
57 5 0.02
58 28 0.11
59 164 0.66
60 9 0.04
ACGTcount: A:0.34, C:0.29, G:0.04, T:0.34
Consensus pattern (58 bp):
AAAATTACCATTTTACCCCCAAATTCCAAAAATTCCATTTTTGACCCCGAACTTTCCC
Found at i:14642864 original size:30 final size:30
Alignment explanation
Indices: 14642681--14643107 Score: 145
Period size: 30 Copynumber: 14.6 Consensus size: 30
14642671 CCCTTAAACT
* *
14642681 TTCCAAGAATTA-CA-TTTTGACCCCTGAAC
1 TTCCAAAAATTACCATTTTTCA-CCCTGAAC
* * *
14642710 TTTCCAAAATTTA-CATTATTGCACTC-GAAC
1 -TTCCAAAAATTACCATT-TTTCACCCTGAAC
* * * *
14642740 TTCACAAAAATTACCA-CTTTAACTC-GAAT
1 TTC-CAAAAATTACCATTTTTCACCCTGAAC
* * *
14642769 TTCCAAAAATT-CTATTTTTGACCCCGAAC
1 TTCCAAAAATTACCATTTTTCACCCTGAAC
* * * ** *
14642798 TTTCCCATAATTACCA-TTCT-ACCCCCAAA
1 -TTCCAAAAATTACCATTTTTCACCCTGAAC
14642827 TGTCCAAAAATT-CCATTTTTCACCCTGAAC
1 T-TCCAAAAATTACCATTTTTCACCCTGAAC
* * * *
14642857 TTGCCAAAAATTACCATTATACCCCCAG-AC
1 TT-CCAAAAATTACCATTTTTCACCCTGAAC
* * *
14642887 TTCCAAAAATT-CTATTTTTGACTCC-AAAC
1 TTCCAAAAATTACCATTTTTCAC-CCTGAAC
* *
14642916 TTCCCAAATATTACCA-TTTT-ACCCTTAGAC
1 TT-CCAAAAATTACCATTTTTCACCCTGA-AC
* * *
14642946 ATCCAAAAATT-CCATTTTTGACCCCGAAC
1 TTCCAAAAATTACCATTTTTCACCCTGAAC
* *
14642975 TTTCCTAAAATTACCA-TTTT-ACCCTTAAAC
1 -TTCCAAAAATTACCATTTTTCACCC-TGAAC
* * *
14643005 TTTCAATAATT-CCA--TTT-A--CTAAAC
1 TTCCAAAAATTACCATTTTTCACCCTGAAC
* * *
14643029 TTTCCCAAAATTACCA-TTTTAACCCCGAA-
1 -TTCCAAAAATTACCATTTTTCACCCTGAAC
* * *
14643058 TGTCAAAAAATT-CCATTTTT-AACCTCAAAC
1 T-TCCAAAAATTACCATTTTTCACCCT-GAAC
14643088 TTCCTAAAAATTACCATTTT
1 TTCC-AAAAATTACCATTTT
14643108 ACCCCTGGCA
Statistics
Matches: 299, Mismatches: 62, Indels: 71
0.69 0.14 0.16
Matches are distributed among these distances:
24 5 0.02
25 9 0.03
26 3 0.01
27 9 0.03
28 40 0.13
29 97 0.32
30 103 0.34
31 30 0.10
32 3 0.01
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.34
Consensus pattern (30 bp):
TTCCAAAAATTACCATTTTTCACCCTGAAC
Found at i:14642891 original size:118 final size:115
Alignment explanation
Indices: 14642665--14643112 Score: 372
Period size: 118 Copynumber: 3.8 Consensus size: 115
14642655 AAAAATCATA
* * * * * *
14642665 TTTTGACCCTTAAACTTT-CCAAGAATTA-CATTTTGACCCCTGAACTTTCCAAAATTTACATTA
1 TTTTGACCC--AAACTTTCCCAA-AATTACCATTTT-ACCCC-CAAATGTCCAAAAATTCCATTT
* * * * * * *
14642728 TTGCACTCGAACTTCACAAAAATTACCACTTTA-ACTCGAATTTCCAAAAATTCTAT
61 TTACCCT-GAACTTC-CAAAAATTACCATTTTACCCCCAAACTTCCAAAAATTCTAT
* * *
14642784 TTTTGACCCCGAACTTTCCCATAATTACCATTCTACCCCCAAATGTCCAAAAATTCCATTTTTCA
1 TTTTGA-CCCAAACTTTCCCAAAATTACCATTTTACCCCCAAATGTCCAAAAATTCCATTTTT-A
* *
14642849 CCCTGAACTTGCCAAAAATTACCATTATACCCCCAGACTTCCAAAAATTCTAT
64 CCCTGAACTT-CCAAAAATTACCATTTTACCCCCAAACTTCCAAAAATTCTAT
** * **
14642902 TTTTGACTCCAAAC-TTCCCAAATATTACCATTTTACCCTTAGACATCCAAAAATTCCATTTTTG
1 TTTTGAC-CCAAACTTTCCCAAA-ATTACCATTTTACCCCCAAATGTCCAAAAATTCCATTTTT-
* * ** * * *
14642966 ACCCCGAACTTTCCTAAAATTACCATTTTACCCTTAAACTTTCAATAATTCCA-
63 ACCCTGAAC-TTCCAAAAATTACCATTTTACCCCCAAACTTCCAAAAATTCTAT
* * * * *
14643019 -TTT-A-CTAAACTTTCCCAAAATTACCATTTTAACCCCGAATGTCAAAAAATTCCATTTTTAAC
1 TTTTGACCCAAACTTTCCCAAAATTACCATTTTACCCCCAAATGTCCAAAAATTCCATTTTTACC
*
14643081 CTCAAACTTCCTAAAAATTACCATTTTACCCC
66 CT-GAACTTCC-AAAAATTACCATTTTACCCC
14643113 TGGCATCGAA
Statistics
Matches: 267, Mismatches: 50, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
112 7 0.03
113 58 0.22
114 8 0.03
115 1 0.00
116 3 0.01
117 47 0.18
118 124 0.46
119 16 0.06
120 3 0.01
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.34
Consensus pattern (115 bp):
TTTTGACCCAAACTTTCCCAAAATTACCATTTTACCCCCAAATGTCCAAAAATTCCATTTTTACC
CTGAACTTCCAAAAATTACCATTTTACCCCCAAACTTCCAAAAATTCTAT
Found at i:14643096 original size:29 final size:29
Alignment explanation
Indices: 14642737--14643108 Score: 162
Period size: 29 Copynumber: 12.8 Consensus size: 29
14642727 ATTGCACTCG
* *
14642737 AACTTCACAAAAATTACCACTTTAA-CTCG
1 AACTTC-CAAAAATTACCATTTTAACCTCA
* * * * *
14642766 AATTTCCAAAAATT-CTATTTTTGACCCCG
1 AACTTCCAAAAATTACCA-TTTTAACCTCA
* * * * *
14642795 AACTTTCCCATAATTACCATTCTACCCCCA
1 AAC-TTCCAAAAATTACCATTTTAACCTCA
* *
14642825 AA-TGTCCAAAAATT-CCATTTTTCACC-CTG
1 AACT-TCCAAAAATTACCA-TTTTAACCTC-A
* * *
14642854 AACTTGCCAAAAATTACCATTATACCCCCA
1 AACTT-CCAAAAATTACCATTTTAACCTCA
* * *
14642884 GACTTCCAAAAATT-CTATTTTTGA-CTCCA
1 AACTTCCAAAAATTACCA-TTTTAACCT-CA
* * *
14642913 AACTTCCCAAATATTACCATTTTACCCTTA
1 AACTT-CCAAAAATTACCATTTTAACCTCA
* * * * *
14642943 GACATCCAAAAATT-CCATTTTTGACCCCG
1 AACTTCCAAAAATTACCA-TTTTAACCTCA
* * *
14642972 AACTTTCCTAAAATTACCATTTTACCCTTA
1 AAC-TTCCAAAAATTACCATTTTAACCTCA
* *
14643002 AACTTTCAATAATT-CCA-TTT-A-CT-A
1 AACTTCCAAAAATTACCATTTTAACCTCA
* * *
14643026 AACTTTCCCAAAATTACCATTTTAACCCCG
1 AAC-TTCCAAAAATTACCATTTTAACCTCA
*
14643056 AA-TGTCAAAAAATT-CCATTTTTAACCTCA
1 AACT-TCCAAAAATTACCA-TTTTAACCTCA
14643085 AACTTCCTAAAAATTACCATTTTA
1 AACTTCC-AAAAATTACCATTTTA
14643109 CCCCTGGCAT
Statistics
Matches: 248, Mismatches: 65, Indels: 59
0.67 0.17 0.16
Matches are distributed among these distances:
24 4 0.02
25 10 0.04
26 3 0.01
27 8 0.03
28 31 0.12
29 90 0.36
30 86 0.35
31 16 0.06
ACGTcount: A:0.35, C:0.28, G:0.03, T:0.34
Consensus pattern (29 bp):
AACTTCCAAAAATTACCATTTTAACCTCA
Found at i:14646995 original size:23 final size:23
Alignment explanation
Indices: 14646976--14647048 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
14646966 GCCTTTTCTT
14646976 GCATTACATACATGCATTTTTTC
1 GCATTACATACATGCATTTTTTC
* ** *
14646999 GCATTGCATATTTGCATATTTTC
1 GCATTACATACATGCATTTTTTC
** *
14647022 GCA-TAGCATATTTGCATATTTTC
1 GCATTA-CATACATGCATTTTTTC
14647045 GCAT
1 GCAT
14647049 AATAATTCTA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
22 1 0.02
23 42 0.98
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (23 bp):
GCATTACATACATGCATTTTTTC
Found at i:14647049 original size:23 final size:23
Alignment explanation
Indices: 14646988--14647049 Score: 106
Period size: 23 Copynumber: 2.7 Consensus size: 23
14646978 ATTACATACA
* *
14646988 TGCATTTTTTCGCATTGCATATT
1 TGCATATTTTCGCATAGCATATT
14647011 TGCATATTTTCGCATAGCATATT
1 TGCATATTTTCGCATAGCATATT
14647034 TGCATATTTTCGCATA
1 TGCATATTTTCGCATA
14647050 ATAATTCTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.47
Consensus pattern (23 bp):
TGCATATTTTCGCATAGCATATT
Found at i:14653586 original size:209 final size:208
Alignment explanation
Indices: 14653213--14653875 Score: 866
Period size: 209 Copynumber: 3.2 Consensus size: 208
14653203 TATCCAAAAT
* * *
14653213 ATAAATCAGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCTGTCTTCCTGATGAGACA
1 ATAAAACAGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCCTAATGAGACA
* * * * *
14653278 CAAAGAAGTGGATCAAAACAAGCGATGCGGTCATCTTCTTGATGAGATATTGAGAAGAAGACCAA
66 CAAAGAAGTGGATC-AAACAAGCGATGTGGTCATCTTCCTGATAAGATACTGAGAAGAAGGCCAA
* * * *
14653343 ATCAATAAAATCAGGCTCAAAGTGAGAGAATCTTCGAACCCCAGCTTCCTAATGAGATATTGAGA
130 ATCAATGAAACCAAGCTCAAAGTGAGAGAATCTTCGAACCCCAGCTTCCTGATGAGATATTGAGA
14653408 AGCAGGTCGAAGCA
195 AGCAGGTCGAAGCA
*
14653422 ATAAAGCAGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCCTAATGAGACA
1 ATAAAACAGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCCTAATGAGACA
* *
14653487 CAAAGAAGTGGATCAAACTAAGCGAAGTGGTCATCTTCCTGATAAGATACTAAGAAGAAGGCCAA
66 CAAAGAAGTGGATCAAAC-AAGCGATGTGGTCATCTTCCTGATAAGATACTGAGAAGAAGGCCAA
* * * *
14653552 ATCAATGAAGCCAAGCTCAAAATGAGCA-AATCTTCGAACCCCAACTTCTTGATGAGATATTGAG
130 ATCAATGAAACCAAGCTCAAAGTGAG-AGAATCTTCGAACCCCAGCTTCCTGATGAGATATTGAG
14653616 AAGCAGGTCGAAGCA
194 AAGCAGGTCGAAGCA
** * * * * * * *
14653631 ATAAAATGGTTAGCTT-CTAGATGAGATACTGAGAAGTGGACCAAATTCGCCTTTC-ATATGAGA
1 ATAAAACAGTTACCTTCCT-GATGAGATACAGAGAAGTGAACCAGATCCGTCTTCCTA-ATGAGA
* ** ** * *
14653694 TACGGAGAAGCAGATTGAAACAAGTGATGCT-GTCATCTTCCTGATAAGATACTGAGAAGAAGGC
64 CACAAAGAAGTGGA-TCAAACAAGCGATG-TGGTCATCTTCCTGATAAGATACTGAGAAGAAGGC
* *
14653758 CAAATCAATGAAACCAAGGTCAAAGTAAGAGAATCTTCGAACCCCAGCTTCCTGATGAGATATTG
127 CAAATCAATGAAACCAAGCTCAAAGTGAGAGAATCTTCGAACCCCAGCTTCCTGATGAGATATTG
14653823 AGAAGCAGGTCGAAGCA
192 AGAAGCAGGTCGAAGCA
** * *
14653840 ATAAAATGGTTATCTTCCTGATGAGATACTGAGAAG
1 ATAAAACAGTTACCTTCCTGATGAGATACAGAGAAG
14653876 AGGATTGAAA
Statistics
Matches: 402, Mismatches: 44, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
208 8 0.02
209 385 0.96
210 9 0.02
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.22
Consensus pattern (208 bp):
ATAAAACAGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCCTAATGAGACA
CAAAGAAGTGGATCAAACAAGCGATGTGGTCATCTTCCTGATAAGATACTGAGAAGAAGGCCAAA
TCAATGAAACCAAGCTCAAAGTGAGAGAATCTTCGAACCCCAGCTTCCTGATGAGATATTGAGAA
GCAGGTCGAAGCA
Found at i:14654263 original size:18 final size:18
Alignment explanation
Indices: 14654240--14654300 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
14654230 CTAAACCCAT
14654240 TTTAAATTTATTTTTAAA
1 TTTAAATTTATTTTTAAA
14654258 TTTAAA--TATGTTTTAAA
1 TTTAAATTTAT-TTTTAAA
** *
14654275 TTTTAAATTTAAATTTATA
1 -TTTAAATTTATTTTTAAA
14654294 TTTAAAT
1 TTTAAAT
14654301 ATAAAAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
16 3 0.08
17 7 0.19
18 19 0.53
19 5 0.14
20 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TTTAAATTTATTTTTAAA
Found at i:14654287 original size:42 final size:41
Alignment explanation
Indices: 14654240--14654323 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 41
14654230 CTAAACCCAT
* * * * *
14654240 TTTAAATTTATTTTTAAATTTAAATATGTTTTAAATTTTAAA
1 TTTAAATTTATATTTAAATATAAAAATATTCTAAA-TTTAAA
14654282 TTTAAATTTATATTTAAATATAAAAATATTCTAAATTTAAA
1 TTTAAATTTATATTTAAATATAAAAATATTCTAAATTTAAA
14654323 T
1 T
14654324 AAACAAAAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 7 0.19
42 30 0.81
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (41 bp):
TTTAAATTTATATTTAAATATAAAAATATTCTAAATTTAAA
Found at i:14654305 original size:24 final size:24
Alignment explanation
Indices: 14654254--14654305 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
14654244 AATTTATTTT
* *
14654254 TAAATTTAAATATGTTTTAAATTT
1 TAAATTTAAATATATTTTAAATTA
*
14654278 TAAATTTAAATTTATATTTAAA-TA
1 TAAATTTAAATATAT-TTTAAATTA
14654302 TAAA
1 TAAA
14654306 AATATTCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TAAATTTAAATATATTTTAAATTA
Found at i:14654323 original size:6 final size:6
Alignment explanation
Indices: 14654240--14654305 Score: 53
Period size: 6 Copynumber: 11.0 Consensus size: 6
14654230 CTAAACCCAT
** * **
14654240 TTTAAA TTTATT TTTAAA TTTAAA TAT-GT TTTAAA TTTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA -TTTAAA TTTAAA
* *
14654288 TTTATA TTTAAA TATAAA
1 TTTAAA TTTAAA TTTAAA
14654306 AATATTCTAA
Statistics
Matches: 45, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
5 2 0.04
6 37 0.82
7 6 0.13
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:14656368 original size:59 final size:59
Alignment explanation
Indices: 14656299--14656782 Score: 522
Period size: 59 Copynumber: 8.2 Consensus size: 59
14656289 GAACTTCACA
* * * *
14656299 AAAATGACCATTTTACCCTTAAATTTCTAAAAATTCCATTTTTGACCCTAAACTTTCCC
1 AAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAAACTTTCCC
* * * *
14656358 CAAATTACCATTTTATCCTCAAA-TGTCAAAAAATTCCATTTTTGACCCTAAAC-TTCCTA
1 AAAATTACCATTTTACCCTCAAACT-TCCAAAAATTCCATTTTTGACCCTAAACTTTCC-C
* * * ** * * *
14656417 AAAACTACCATTTTA-CCTTAGACTTCCAAAAATTTTACTTTTAACCCCAAACTTTCCC
1 AAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAAACTTTCCC
* * *
14656475 AAAATTACCATTTTACCCTCGAA-TGTCCTAAAATTCCATTTTTGACTCTAAAC-TTCCC
1 AAAATTACCATTTTACCCTCAAACT-TCCAAAAATTCCATTTTTGACCCTAAACTTTCCC
*
14656533 AAAAATTACCATTTTACCACT-AAACTTCCAAAAATTCCATTTTTAACCCTAAACTTTCCC
1 -AAAATTACCATTTTACC-CTCAAACTTCCAAAAATTCCATTTTTGACCCTAAACTTTCCC
* * * * * *
14656593 AAAATCACCATTTTACCCCCAAACATCCAAAAATTCCATTTTT-ACCCAAAATTTTCCT
1 AAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAAACTTTCCC
* *
14656651 AAAATTACCATTTTACCCTCAAACTTCCAAAAATTCTATTTTT-AACCTCAAACTTTCCC
1 AAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCT-AAACTTTCCC
* * * *
14656710 AAAATTACCATTTTACCCTCGAA-TGTCCAAAAATTCAATTTTTGA-CCTCGAAC-TTCCT
1 AAAATTACCATTTTACCCTCAAACT-TCCAAAAATTCCATTTTTGACCCT-AAACTTTCCC
14656768 AAAGATTACCATTTT
1 AAA-ATTACCATTTT
14656783 TCCTCGGGCA
Statistics
Matches: 360, Mismatches: 50, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
58 115 0.32
59 236 0.66
60 9 0.03
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (59 bp):
AAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTAAACTTTCCC
Found at i:14656469 original size:117 final size:118
Alignment explanation
Indices: 14656290--14656782 Score: 629
Period size: 117 Copynumber: 4.2 Consensus size: 118
14656280 CATTATCACG
* * * * *
14656290 AACTTCAC-AAAAATGACCATTTTACCCTTAAATTTCTAAAAATTCCATTTTTGACCCTAAACTT
1 AACTTC-CTAAAAATTACCATTTTACCCTTAAACTTCCAAAAATTCCATTTTTAACCCCAAACTT
* * *
14656354 TCCCCAAATTACCATTTTATCCTCAAATGTCAAAAAATTCCATTTTTGACCCTA
65 TCCCAAAATTACCATTTTACCCTCAAATGTCCAAAAATTCCATTTTTGACCCTA
* * ** *
14656408 AACTTCCTAAAAACTACCATTTTA-CCTTAGACTTCCAAAAATTTTACTTTTAACCCCAAACTTT
1 AACTTCCTAAAAATTACCATTTTACCCTTAAACTTCCAAAAATTCCATTTTTAACCCCAAACTTT
* * *
14656472 CCCAAAATTACCATTTTACCCTCGAATGTCCTAAAATTCCATTTTTGACTCTA
66 CCCAAAATTACCATTTTACCCTCAAATGTCCAAAAATTCCATTTTTGACCCTA
* *
14656525 AACTTCCCAAAAATTACCATTTTACCAC-TAAACTTCCAAAAATTCCATTTTTAACCCTAAACTT
1 AACTTCCTAAAAATTACCATTTTACC-CTTAAACTTCCAAAAATTCCATTTTTAACCCCAAACTT
* * ** *
14656589 TCCCAAAATCACCATTTTACCCCCAAACATCCAAAAATTCCATTTTT-ACCCAA
65 TCCCAAAATTACCATTTTACCCTCAAATGTCCAAAAATTCCATTTTTGACCCTA
* * * *
14656642 AATTTTCCT-AAAATTACCATTTTACCCTCAAACTTCCAAAAATTCTATTTTTAACCTCAAACTT
1 AA-CTTCCTAAAAATTACCATTTTACCCTTAAACTTCCAAAAATTCCATTTTTAACCCCAAACTT
* * *
14656706 TCCCAAAATTACCATTTTACCCTCGAATGTCCAAAAATTCAATTTTTGA-CCTCG
65 TCCCAAAATTACCATTTTACCCTCAAATGTCCAAAAATTCCATTTTTGACCCT-A
*
14656760 AACTTCCTAAAGATTACCATTTT
1 AACTTCCTAAAAATTACCATTTT
14656783 TCCTCGGGCA
Statistics
Matches: 320, Mismatches: 47, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
116 1 0.00
117 205 0.64
118 113 0.35
119 1 0.00
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (118 bp):
AACTTCCTAAAAATTACCATTTTACCCTTAAACTTCCAAAAATTCCATTTTTAACCCCAAACTTT
CCCAAAATTACCATTTTACCCTCAAATGTCCAAAAATTCCATTTTTGACCCTA
Found at i:14656752 original size:29 final size:30
Alignment explanation
Indices: 14656309--14656783 Score: 309
Period size: 29 Copynumber: 16.1 Consensus size: 30
14656299 AAAATGACCA
* *
14656309 TTTTACCCTTAAA-TTTCTAAAAATTCCAT
1 TTTTACCCTCAAACTTTCCAAAAATTCCAT
**
14656338 TTTTGACCCT-AAACTTTCCCCAAATTACCA-
1 TTTT-ACCCTCAAACTTTCCAAAAATT-CCAT
* * *
14656368 TTTTATCCTCAAA-TGTCAAAAAATTCCAT
1 TTTTACCCTCAAACTTTCCAAAAATTCCAT
*
14656397 TTTTGACCCT-AAAC-TTCCTAAAAACTACCA-
1 TTTT-ACCCTCAAACTTTCC-AAAAA-TTCCAT
* * **
14656427 TTTTA-CCTTAGAC-TTCCAAAAATTTTACT
1 TTTTACCCTCAAACTTTCCAAAAATTCCA-T
* *
14656456 TTTAACCC-CAAACTTTCCCAAAATTACCA-
1 TTTTACCCTCAAACTTTCCAAAAATT-CCAT
* * *
14656485 TTTTACCCTCGAA-TGTCCTAAAATTCCAT
1 TTTTACCCTCAAACTTTCCAAAAATTCCAT
* *
14656514 TTTTGACTCT-AAACTTCCCAAAAATTACCA-
1 TTTT-ACCCTCAAACTTTCCAAAAATT-CCAT
14656544 TTTTACCACT-AAAC-TTCCAAAAATTCCAT
1 TTTTACC-CTCAAACTTTCCAAAAATTCCAT
* *
14656573 TTTTAACCCT-AAACTTTCCCAAAATCACCA-
1 TTTT-ACCCTCAAACTTTCCAAAAAT-TCCAT
* *
14656603 TTTTACCCCCAAAC-ATCCAAAAATTCCAT
1 TTTTACCCTCAAACTTTCCAAAAATTCCAT
* * *
14656632 TTTTACCC-AAAATTTTCCTAAAATTACCA-
1 TTTTACCCTCAAACTTTCCAAAAATT-CCAT
*
14656661 TTTTACCCTCAAAC-TTCCAAAAATTCTAT
1 TTTTACCCTCAAACTTTCCAAAAATTCCAT
* *
14656690 TTTTAACCTCAAACTTTCCCAAAATTACCA-
1 TTTTACCCTCAAACTTTCCAAAAATT-CCAT
* * *
14656720 TTTTACCCTCGAA-TGTCCAAAAATTCAAT
1 TTTTACCCTCAAACTTTCCAAAAATTCCAT
* *
14656749 TTTTGA-CCTCGAAC-TTCCTAAAGATTACCAT
1 TTTT-ACCCTCAAACTTTCC-AAAAATT-CCAT
14656780 TTTT
1 TTTT
14656784 CCTCGGGCAT
Statistics
Matches: 350, Mismatches: 58, Indels: 74
0.73 0.12 0.15
Matches are distributed among these distances:
27 2 0.01
28 27 0.08
29 172 0.49
30 126 0.36
31 23 0.07
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.36
Consensus pattern (30 bp):
TTTTACCCTCAAACTTTCCAAAAATTCCAT
Found at i:14656781 original size:176 final size:175
Alignment explanation
Indices: 14656299--14656782 Score: 570
Period size: 176 Copynumber: 2.7 Consensus size: 175
14656289 GAACTTCACA
* * * *
14656299 AAAATGACCATTTTACCCTTAAATTTCTAAAAATTCCATTTTTGACC-CTAAACTTTCCCCAAAT
1 AAAATTACCATTTTACCCTCAAA-TTCCAAAAATTCCATTTTTGACCTCTAAACTTTCCCAAAAT
* * *
14656363 TACCATTTTATCCTCAAATGTCAAAAAATTCCATTTTTGACCCTAAACTTCCTAAAAACTACCAT
65 TACCATTTTACCCTCAAATGTCCAAAAATTCCATTTTTGACCCTAAACTTCCT-AAAATTACCAT
** * * ** *
14656428 TTTACCTTAGACTTCCAAAAATTTTACTTTTAACCCCAAACTTTCCC
129 TTTACCCCAAACATCCAAAAATTCCACTTTTAACCCAAAACTTTCCC
* *
14656475 AAAATTACCATTTTACCCTCGAATGTCCTAAAATTCCATTTTTGA-CTCTAAAC-TTCCCAAAAA
1 AAAATTACCATTTTACCCTCAAAT-TCCAAAAATTCCATTTTTGACCTCTAAACTTTCCC-AAAA
* * *
14656538 TTACCATTTTACCACT-AAACT-TCCAAAAATTCCATTTTTAACCCTAAACTTTCCCAAAATCAC
64 TTACCATTTTACC-CTCAAA-TGTCCAAAAATTCCATTTTTGACCCTAAAC-TTCCTAAAATTAC
* * *
14656601 CATTTTACCCCCAAACATCCAAAAATTCCA-TTTTTACCCAAAATTTTCCT
126 CATTTTA-CCCCAAACATCCAAAAATTCCACTTTTAACCCAAAACTTTCCC
* *
14656651 AAAATTACCATTTTACCCTCAAACTTCCAAAAATTCTATTTTTAACCTC-AAACTTTCCCAAAAT
1 AAAATTACCATTTTACCCTCAAA-TTCCAAAAATTCCATTTTTGACCTCTAAACTTTCCCAAAAT
* * *
14656715 TACCATTTTACCCTCGAATGTCCAAAAATTCAATTTTTGA-CCTCGAACTTCCTAAAGATTACCA
65 TACCATTTTACCCTCAAATGTCCAAAAATTCCATTTTTGACCCT-AAACTTCCTAAA-ATTACCA
14656779 TTTT
128 TTTT
14656783 TCCTCGGGCA
Statistics
Matches: 262, Mismatches: 32, Indels: 28
0.81 0.10 0.09
Matches are distributed among these distances:
175 20 0.08
176 210 0.80
177 32 0.12
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (175 bp):
AAAATTACCATTTTACCCTCAAATTCCAAAAATTCCATTTTTGACCTCTAAACTTTCCCAAAATT
ACCATTTTACCCTCAAATGTCCAAAAATTCCATTTTTGACCCTAAACTTCCTAAAATTACCATTT
TACCCCAAACATCCAAAAATTCCACTTTTAACCCAAAACTTTCCC
Found at i:14671497 original size:266 final size:266
Alignment explanation
Indices: 14671023--14671556 Score: 1068
Period size: 266 Copynumber: 2.0 Consensus size: 266
14671013 CAAATCCAAA
14671023 TTTTTTTCATTGACTAAGTATCATGCAATAATTATAGAAATTAGAAATAAATAATTGCTTATATC
1 TTTTTTTCATTGACTAAGTATCATGCAATAATTATAGAAATTAGAAATAAATAATTGCTTATATC
14671088 TACTCAAACCACGTTTTATAAACTTTCAAATACTATGAAATAAAATCAATCACTTCACAACTTAA
66 TACTCAAACCACGTTTTATAAACTTTCAAATACTATGAAATAAAATCAATCACTTCACAACTTAA
14671153 TTACTCTTGCTAAATAATTTGTACCCAATTTTATTTAATAAGTACAAACTTTTTTTTCGATTTTA
131 TTACTCTTGCTAAATAATTTGTACCCAATTTTATTTAATAAGTACAAACTTTTTTTTCGATTTTA
14671218 TTTGAGACCTAATCAAATCTTTTTACGCGAATTGAGATGACAAGCCAAGCACCTCAACCCGGTTA
196 TTTGAGACCTAATCAAATCTTTTTACGCGAATTGAGATGACAAGCCAAGCACCTCAACCCGGTTA
14671283 CTCAAT
261 CTCAAT
14671289 TTTTTTTCATTGACTAAGTATCATGCAATAATTATAGAAATTAGAAATAAATAATTGCTTATATC
1 TTTTTTTCATTGACTAAGTATCATGCAATAATTATAGAAATTAGAAATAAATAATTGCTTATATC
14671354 TACTCAAACCACGTTTTATAAACTTTCAAATACTATGAAATAAAATCAATCACTTCACAACTTAA
66 TACTCAAACCACGTTTTATAAACTTTCAAATACTATGAAATAAAATCAATCACTTCACAACTTAA
14671419 TTACTCTTGCTAAATAATTTGTACCCAATTTTATTTAATAAGTACAAACTTTTTTTTCGATTTTA
131 TTACTCTTGCTAAATAATTTGTACCCAATTTTATTTAATAAGTACAAACTTTTTTTTCGATTTTA
14671484 TTTGAGACCTAATCAAATCTTTTTACGCGAATTGAGATGACAAGCCAAGCACCTCAACCCGGTTA
196 TTTGAGACCTAATCAAATCTTTTTACGCGAATTGAGATGACAAGCCAAGCACCTCAACCCGGTTA
14671549 CTCAAT
261 CTCAAT
14671555 TT
1 TT
14671557 GAAAAGTCGA
Statistics
Matches: 268, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
266 268 1.00
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.37
Consensus pattern (266 bp):
TTTTTTTCATTGACTAAGTATCATGCAATAATTATAGAAATTAGAAATAAATAATTGCTTATATC
TACTCAAACCACGTTTTATAAACTTTCAAATACTATGAAATAAAATCAATCACTTCACAACTTAA
TTACTCTTGCTAAATAATTTGTACCCAATTTTATTTAATAAGTACAAACTTTTTTTTCGATTTTA
TTTGAGACCTAATCAAATCTTTTTACGCGAATTGAGATGACAAGCCAAGCACCTCAACCCGGTTA
CTCAAT
Found at i:14684081 original size:24 final size:24
Alignment explanation
Indices: 14684048--14684098 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
14684038 AGAAATAATC
* *
14684048 TTTCAGTTAAACTCTGTGTATTTG
1 TTTCAATTAAACTCCGTGTATTTG
*
14684072 TTTCAATTAAACTCCGTTTATTTG
1 TTTCAATTAAACTCCGTGTATTTG
14684096 TTT
1 TTT
14684099 GAGTCAAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.14, G:0.12, T:0.53
Consensus pattern (24 bp):
TTTCAATTAAACTCCGTGTATTTG
Found at i:14684107 original size:24 final size:24
Alignment explanation
Indices: 14684056--14684109 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
14684046 TCTTTCAGTT
* *
14684056 AAACTCTGTGTATTTGTTTCAATT
1 AAACTCCGTGTATTTGTTTCAATC
* * *
14684080 AAACTCCGTTTATTTGTTTGAGTC
1 AAACTCCGTGTATTTGTTTCAATC
14684104 AAACTC
1 AAACTC
14684110 TTATTACTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (24 bp):
AAACTCCGTGTATTTGTTTCAATC
Found at i:14732141 original size:13 final size:12
Alignment explanation
Indices: 14732118--14732148 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
14732108 TATTTTAAGA
14732118 TTAAATTTAT-T
1 TTAAATTTATAT
14732129 TTAAATTTATAT
1 TTAAATTTATAT
14732141 TTAAATTT
1 TTAAATTT
14732149 GAAATTATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TTAAATTTATAT
Found at i:14732142 original size:17 final size:18
Alignment explanation
Indices: 14732100--14732143 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
14732090 CTAAATCCAT
14732100 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTTTAAGA
14732118 -TTAAATTTATTTTAA-A
1 TTTAAATTTATTTTAAGA
*
14732134 TTTATATTTA
1 TTTAAATTTA
14732144 AATTTGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 1 0.04
17 23 0.96
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TTTAAATTTATTTTAAGA
Found at i:14732347 original size:3 final size:3
Alignment explanation
Indices: 14732339--14732391 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
14732329 AAATAGTATC
* * ** * *
14732339 AAT AAT AAT AAT AAT ACT ATT CTT AAT AGT AGT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14732387 AAT AA
1 AAT AA
14732392 GGCAGTCAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:14733529 original size:30 final size:30
Alignment explanation
Indices: 14733489--14733561 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
14733479 AAAGGTCCCT
* *
14733489 AAACTGTCCAAAAATCATATTTTGACCCCC
1 AAACTTTCCAAAAATCACATTTTGACCCCC
* *
14733519 AAACTTTCCAAAAGTTACATTTTGACCCCC
1 AAACTTTCCAAAAATCACATTTTGACCCCC
*
14733549 AAACTTTACAAAA
1 AAACTTTCCAAAA
14733562 TTTACATTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.40, C:0.27, G:0.05, T:0.27
Consensus pattern (30 bp):
AAACTTTCCAAAAATCACATTTTGACCCCC
Found at i:14733567 original size:30 final size:30
Alignment explanation
Indices: 14733507--14733569 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
14733497 CAAAAATCAT
*
14733507 ATTTTGACCCCCAAACTTTCCAAAAGTTAC
1 ATTTTGACCCCCAAACTTTACAAAAGTTAC
*
14733537 ATTTTGACCCCCAAACTTTACAAAATTTAC
1 ATTTTGACCCCCAAACTTTACAAAAGTTAC
14733567 ATT
1 ATT
14733570 ATCACGAACT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.33
Consensus pattern (30 bp):
ATTTTGACCCCCAAACTTTACAAAAGTTAC
Found at i:14733653 original size:59 final size:59
Alignment explanation
Indices: 14733583--14734008 Score: 418
Period size: 59 Copynumber: 7.3 Consensus size: 59
14733573 ACGAACTTAA
* * ** *
14733583 AAAAATTACCATTTTACCCCTAAATTTCCAAAAATTCAATTTTTGACCCTGGAC-TTCTT
1 AAAAATTACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCCTAAACTTTC-C
* * ** *** * *
14733642 AAAAACTACCATTTTA-CCTTGGACTTCCAAAAATTTTGTTTTTAACCCCAAACTTTCC
1 AAAAATTACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCCTAAACTTTCC
* * ** * *
14733700 CAAAATTACCATTTTACCCCCAAA-TGTCCAAAAATTCCATTATTT-ACTTTGAACTTCCC
1 AAAAATTACCATTTTACCCCTAAACT-TCCAAAAATTCCATT-TTTGACCCTAAACTTTCC
*
14733759 AAAAATTACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCTTAAACTTTCC
1 AAAAATTACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCCTAAACTTTCC
* * * * * *
14733818 CAAAATTACCATTTTACCCCCAAACATCCAAAAATTCCATTTTTTACCCCAAATTTTCC
1 AAAAATTACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCCTAAACTTTCC
* * * * * *
14733877 AAAAATTGCCATTTTACCCTTAGACTTCTAAAAATTCC-TTTTTAACCCCAAACTTTCC
1 AAAAATTACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCCTAAACTTTCC
* * *
14733935 CAAAATTACCATTTTACCCTCT-AACGTCCAAAAATTCCATTTTTGA-CCTCGAAC-TTCC
1 AAAAATTACCATTTTACCC-CTAAACTTCCAAAAATTCCATTTTTGACCCT-AAACTTTCC
14733993 TAAAAATTACCATTTT
1 -AAAAATTACCATTTT
14734009 TCCCTGGGCA
Statistics
Matches: 299, Mismatches: 58, Indels: 20
0.79 0.15 0.05
Matches are distributed among these distances:
58 98 0.33
59 197 0.66
60 4 0.01
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.35
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCCTAAACTTTCC
Found at i:14733730 original size:117 final size:118
Alignment explanation
Indices: 14733584--14734034 Score: 509
Period size: 117 Copynumber: 3.8 Consensus size: 118
14733574 CGAACTTAAA
* ** * * * *
14733584 AAAATTACCATTTTACCCCTAAATTTCCAAAAATTCAATTTTTGACCCTGGACTTCTTAAAAACT
1 AAAATTACCATTTTACCCCCAAACGTCCAAAAATTCCATTTTTGACCCTGAACTTCCTAAAAATT
* * **
14733649 ACCATTTTA-CCTTGGACTTCCAAAAATTTTGTTTTTAACCCCAAACTTTCCC
66 ACCATTTTACCCCTAGACTTCCAAAAATTTCATTTTTAACCCCAAACTTTCCC
* ** *
14733701 AAAATTACCATTTTACCCCCAAATGTCCAAAAATTCCATTATTT-ACTTTGAACTTCCCAAAAAT
1 AAAATTACCATTTTACCCCCAAACGTCCAAAAATTCCATT-TTTGACCCTGAACTTCCTAAAAAT
* * * **
14733765 TACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCTTAAACTTTCCC
65 TACCATTTTACCCCTAGACTTCCAAAAATTTCATTTTTAACCCCAAACTTTCCC
* * ** *
14733819 AAAATTACCATTTTACCCCCAAACATCCAAAAATTCCATTTTTTACCCCAAATTTTCC-AAAAAT
1 AAAATTACCATTTTACCCCCAAACGTCCAAAAATTCCATTTTTGACCCTGAA-CTTCCTAAAAAT
* * * *
14733883 TGCCATTTTACCCTTAGACTTCTAAAAA-TTCCTTTTTAACCCCAAACTTTCCC
65 TACCATTTTACCCCTAGACTTCCAAAAATTTCATTTTTAACCCCAAACTTTCCC
* *
14733936 AAAATTACCATTTTACCCTCTAACGTCCAAAAATTCCATTTTTGA-CCTCGAACTTCCTAAAAAT
1 AAAATTACCATTTTACCCCCAAACGTCCAAAAATTCCATTTTTGACCCT-GAACTTCCTAAAAAT
* * * * *
14734000 TACCATTTT-TCCCTGGGCATCCAAAAATTGCATTT
65 TACCATTTTACCCCTAGACTTCCAAAAATTTCATTT
14734035 AATCCCGACT
Statistics
Matches: 277, Mismatches: 50, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
116 18 0.06
117 146 0.53
118 109 0.39
119 4 0.01
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.35
Consensus pattern (118 bp):
AAAATTACCATTTTACCCCCAAACGTCCAAAAATTCCATTTTTGACCCTGAACTTCCTAAAAATT
ACCATTTTACCCCTAGACTTCCAAAAATTTCATTTTTAACCCCAAACTTTCCC
Found at i:14733790 original size:176 final size:176
Alignment explanation
Indices: 14733583--14734034 Score: 495
Period size: 176 Copynumber: 2.6 Consensus size: 176
14733573 ACGAACTTAA
* * * *
14733583 AAAAATTACCATTTTACCCCTAAATTTCCAAAAATTCAATTTTTGACCCTGGACTTCTTAAAAAC
1 AAAAATTACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCCTGAACTTCTTAAAAAT
* * *** *
14733648 TACCATTTTACCTTGGACTTCCAAAAATTTTGTTTTTAACCCCAAACTTTCCCAAAATTACCATT
66 TACCATTTTACCCTGGACATCCAAAAATTCCATTTTTAACCCCAAACTTTCCAAAAATTACCATT
****
14733713 TTACCCCCA-AATGTCCAAAAATTCCATTATTT-ACTTTGAAC-TTCCC
131 TTACCCCCAGAAT-TCCAAAAATTCC-TT-TTTAACCCCAAACTTTCCC
* * **
14733759 AAAAATTACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCTTAAACTT-TCCCAAAA
1 AAAAATTACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCCTGAACTTCT-TAAAAA
*** * * *
14733823 TTACCATTTTACCCCCAAACATCCAAAAATTCCATTTTTTACCCCAAATTTTCCAAAAATTGCCA
65 TTACCATTTTA-CCCTGGACATCCAAAAATTCCATTTTTAACCCCAAACTTTCCAAAAATTACCA
** * *
14733888 TTTTACCCTTAGACTTCTAAAAATTCCTTTTTAACCCCAAACTTTCCC
129 TTTTACCCCCAGAATTCCAAAAATTCCTTTTTAACCCCAAACTTTCCC
* *
14733936 -AAAATTACCATTTTACCCTCT-AACGTCCAAAAATTCCATTTTTGA-CCTCGAACTTCCTAAAA
1 AAAAATTACCATTTTACCC-CTAAACTTCCAAAAATTCCATTTTTGACCCT-GAACTTCTTAAAA
* * *
14733998 ATTACCATTTTTCCCTGGGCATCCAAAAATTGCATTT
64 ATTACCATTTTACCCTGGACATCCAAAAATTCCATTT
14734035 AATCCCGACT
Statistics
Matches: 228, Mismatches: 40, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
175 26 0.11
176 132 0.58
177 68 0.30
178 2 0.01
ACGTcount: A:0.34, C:0.27, G:0.04, T:0.35
Consensus pattern (176 bp):
AAAAATTACCATTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCCTGAACTTCTTAAAAAT
TACCATTTTACCCTGGACATCCAAAAATTCCATTTTTAACCCCAAACTTTCCAAAAATTACCATT
TTACCCCCAGAATTCCAAAAATTCCTTTTTAACCCCAAACTTTCCC
Found at i:14740761 original size:29 final size:29
Alignment explanation
Indices: 14740694--14740865 Score: 152
Period size: 29 Copynumber: 5.9 Consensus size: 29
14740684 ACATCCGAGA
* *
14740694 GTAAAACA-GTAATTTTTGAAAGTTTCGGG
1 GTAAAA-ATGTAATTTTTGGAAGTTTAGGG
* * *
14740723 GTCTAAAATGGAGTTTTTGGAAGTTTAGGG
1 GT-AAAAATGTAATTTTTGGAAGTTTAGGG
*
14740753 GTAGAAATGTAATTTTTGGAAGTTTTA-GG
1 GTAAAAATGTAATTTTTGGAAG-TTTAGGG
** * * *
14740782 GTCAAAAATGGGATTTTTAGATG-TTCGAGG
1 GT-AAAAATGTAATTTTTGGAAGTTTAG-GG
* *
14740812 GTAAAAATGTATTTTTTGGAATTTTAGGG
1 GTAAAAATGTAATTTTTGGAAGTTTAGGG
*
14740841 GTAAAAATGTAATTTTTAGAAGTTT
1 GTAAAAATGTAATTTTTGGAAGTTT
14740866 CGAGGCCAAA
Statistics
Matches: 111, Mismatches: 25, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
28 2 0.02
29 61 0.55
30 48 0.43
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.39
Consensus pattern (29 bp):
GTAAAAATGTAATTTTTGGAAGTTTAGGG
Found at i:14740799 original size:59 final size:60
Alignment explanation
Indices: 14740694--14740870 Score: 177
Period size: 59 Copynumber: 3.0 Consensus size: 60
14740684 ACATCCGAGA
* ** * *
14740694 GTAAAACA-GTAATTTTTGAAAGTTTCGGGGTCTAAAAT-GGAGTTTTTGGAAGTTTAG-GG
1 GTAAAA-ATGTAATTTTTGGAAGTTTTAGGGTCAAAAATGGGA-TTTTTAGAAGTTTAGAGG
* * *
14740753 GTAGAAATGTAATTTTTGGAAGTTTTAGGGTCAAAAATGGGATTTTTAGATG-TTCGAGG
1 GTAAAAATGTAATTTTTGGAAGTTTTAGGGTCAAAAATGGGATTTTTAGAAGTTTAGAGG
* ** *
14740812 GTAAAAATGTATTTTTTGGAA-TTTTAGGGGT-AAAAATGTAATTTTTAGAAGTTTCGAGG
1 GTAAAAATGTAATTTTTGGAAGTTTTA-GGGTCAAAAATGGGATTTTTAGAAGTTTAGAGG
14740871 CCAAAATATA
Statistics
Matches: 100, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
58 26 0.26
59 71 0.71
60 3 0.03
ACGTcount: A:0.32, C:0.03, G:0.27, T:0.38
Consensus pattern (60 bp):
GTAAAAATGTAATTTTTGGAAGTTTTAGGGTCAAAAATGGGATTTTTAGAAGTTTAGAGG
Done.