Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 53 of 132
Found at i:14742733 original size:6 final size:6
Alignment explanation
Indices: 14742722--14742777 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
14742712 AATATGAAAA
* * * * *
14742722 TAAATT TAAATT CAAATT CAAATT TAAA-A TAAATC TAAATT TAAA-A
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
14742768 TAAATT TAAA
1 TAAATT TAAA
14742778 AGGGCTCGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
5 8 0.20
6 33 0.80
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (6 bp):
TAAATT
Found at i:14742777 original size:17 final size:17
Alignment explanation
Indices: 14742722--14742777 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
14742712 AATATGAAAA
*
14742722 TAAATTTAAATTCAAATT
1 TAAATTTAAAAT-AAATT
* *
14742740 CAAATTTAAAATAAATC
1 TAAATTTAAAATAAATT
14742757 TAAATTTAAAATAAATT
1 TAAATTTAAAATAAATT
14742774 TAAA
1 TAAA
14742778 AGGGCTCGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
17 23 0.70
18 10 0.30
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAATTTAAAATAAATT
Found at i:14750843 original size:209 final size:209
Alignment explanation
Indices: 14750186--14750840 Score: 859
Period size: 209 Copynumber: 3.1 Consensus size: 209
14750176 TATCCAAAAT
* *
14750186 ATAAAGTGGTTACCTTCCTAATGAGATACAGAGAAGTGAACCAGA-TCTGTCTTCCTAATGAGAC
1 ATAAAATGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATTC-GTCTTCCTAATGAGAC
* * * *
14750250 ACAGAAAAGTGGATCAAAACAAGCGATACGGTCATCTTCTTGATGAGATACTGT-GAAGAAGACC
65 ACAGAGAAGTGGATTAAAACAAGCGATGCGGTCATCTTCTTGATGAGATACT-TAGAAGAAGGCC
*** * * * *
14750314 AAATCAAT-AAAATAGGCTCAAAGTGAGAGAATCTTCGAACCCTAGCTTCCTAATGAGATATTGA
129 AAATCAATGAAGCCAAGCTCAAAGTGAGCGAATCTTCGAACCCCAGCTTCCTGATGAGATATTGA
14750378 GAAGCAGGTCGAAGCA
194 GAAGCAGGTCGAAGCA
*** *
14750394 ATAAAGCAGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCGTCTTCCTAATGAGACA
1 ATAAAATGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATTCGTCTTCCTAATGAGACA
* * * * *
14750459 CAGAGAAGTGGA-TCAAACTAAGCGAAGCGGTCATCTTCCTGATAAGATACTAAGAAGAAGGCCA
66 CAGAGAAGTGGATTAAAAC-AAGCGATGCGGTCATCTTCTTGATGAGATACTTAGAAGAAGGCCA
* * * *
14750523 AATCAATGAAGCCAAGCTCAAAATGAGCAAATCTTCGAACCCCAACTTCTTGATGAGATATTGAG
130 AATCAATGAAGCCAAGCTCAAAGTGAGCGAATCTTCGAACCCCAGCTTCCTGATGAGATATTGAG
14750588 AAGCAGGTCGAAGCA
195 AAGCAGGTCGAAGCA
* * * * * * * *
14750603 ATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGCCTTTCTGATGAGATA
1 ATAAAATGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATTCGTCTTCCTAATGAGACA
* * * * * *
14750668 CGGAGAAGTAGATTGAAACAAGTGATGCTGTCATCTTCTTGATGAGATAGTTAGAAGAAGGCCAA
66 CAGAGAAGTGGATTAAAACAAGCGATGCGGTCATCTTCTTGATGAGATACTTAGAAGAAGGCCAA
*
14750733 ATCAATGAAGCCAAGCTCAAAGTAAGCGAATCTTCGAACCCCAGCTTCCTGATGAGATATTGAGA
131 ATCAATGAAGCCAAGCTCAAAGTGAGCGAATCTTCGAACCCCAGCTTCCTGATGAGATATTGAGA
*
14750798 AGCAGGTCAAAGCA
196 AGCAGGTCGAAGCA
* *
14750812 ATAAAATGGTTATCATCCTGATGAGATAC
1 ATAAAATGGTTACCTTCCTGATGAGATAC
14750841 TGAAAAGCGG
Statistics
Matches: 388, Mismatches: 54, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
207 4 0.01
208 115 0.30
209 264 0.68
210 5 0.01
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (209 bp):
ATAAAATGGTTACCTTCCTGATGAGATACAGAGAAGTGAACCAGATTCGTCTTCCTAATGAGACA
CAGAGAAGTGGATTAAAACAAGCGATGCGGTCATCTTCTTGATGAGATACTTAGAAGAAGGCCAA
ATCAATGAAGCCAAGCTCAAAGTGAGCGAATCTTCGAACCCCAGCTTCCTGATGAGATATTGAGA
AGCAGGTCGAAGCA
Found at i:14751235 original size:18 final size:17
Alignment explanation
Indices: 14751212--14751275 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 17
14751202 CTAAACCAAT
14751212 TTTAAATTTATTTTGAAA
1 TTTAAATTTATTTT-AAA
* *
14751230 TTTAAATATGTTTTAAAA
1 TTTAAATTTATTTT-AAA
**
14751248 TTTAAATTTAAATTAATA
1 TTTAAATTTATTTTAA-A
14751266 TTTAAATTTA
1 TTTAAATTTA
14751276 AAAATATTCT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
17 2 0.05
18 36 0.95
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:14751258 original size:42 final size:41
Alignment explanation
Indices: 14751212--14751295 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 41
14751202 CTAAACCAAT
* * * *
14751212 TTTAAATTTAT-TTTGAAATTTAAATATGTTTTAAAATTTAAA
1 TTTAAATTAATATTT-AAATTTAAAAATATTCT-AAATTTAAA
14751254 TTTAAATTAATATTTAAATTTAAAAATATTCTAAATTTAAA
1 TTTAAATTAATATTTAAATTTAAAAATATTCTAAATTTAAA
14751295 T
1 T
14751296 AAACAAAAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.27
42 24 0.65
43 3 0.08
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.50
Consensus pattern (41 bp):
TTTAAATTAATATTTAAATTTAAAAATATTCTAAATTTAAA
Found at i:14751276 original size:18 final size:18
Alignment explanation
Indices: 14751242--14751295 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
14751232 TAAATATGTT
*
14751242 TTAAAATTTAAATTTAAA
1 TTAATATTTAAATTTAAA
14751260 TTAATATTTAAATTTAAA
1 TTAATATTTAAATTTAAA
14751278 --AATATTCTAAATTTAAA
1 TTAATATT-TAAATTTAAA
14751295 T
1 T
14751296 AAACAAAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
16 6 0.18
17 10 0.30
18 17 0.52
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
TTAATATTTAAATTTAAA
Found at i:14751295 original size:6 final size:6
Alignment explanation
Indices: 14751245--14751277 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
14751235 ATATGTTTTA
14751245 AAATTT AAATTT AAA-TT AATATTT AAATTT AAA
1 AAATTT AAATTT AAATTT AA-ATTT AAATTT AAA
14751278 AATATTCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 4 0.16
6 17 0.68
7 4 0.16
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (6 bp):
AAATTT
Found at i:14755915 original size:22 final size:18
Alignment explanation
Indices: 14755890--14755934 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 18
14755880 CTCATTTTCC
14755890 TAAAATAGCCCAACACCCAAAA
1 TAAAATA-CCCAA-A-CC-AAA
14755912 TAAAATACCCAAACCAAA
1 TAAAATACCCAAACCAAA
14755930 TAAAA
1 TAAAA
14755935 CCCATACCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.35
19 2 0.09
20 1 0.04
21 5 0.22
22 7 0.30
ACGTcount: A:0.60, C:0.27, G:0.02, T:0.11
Consensus pattern (18 bp):
TAAAATACCCAAACCAAA
Found at i:14776164 original size:12 final size:12
Alignment explanation
Indices: 14776147--14776176 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14776137 TACACACTTG
14776147 CATTATTGACGT
1 CATTATTGACGT
*
14776159 CATTATTGACTT
1 CATTATTGACGT
14776171 CATTAT
1 CATTAT
14776177 CCCTCCTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.47
Consensus pattern (12 bp):
CATTATTGACGT
Found at i:14777396 original size:23 final size:23
Alignment explanation
Indices: 14777357--14777401 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14777347 AATATGCAAA
*
14777357 TATGCAATGCGAAAAAATGCATG
1 TATGCAATGCGAAAAAAGGCATG
*
14777380 TATGTAATGC-AAGAAAAGGCAT
1 TATGCAATGCGAA-AAAAGGCAT
14777402 TGATTTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (23 bp):
TATGCAATGCGAAAAAAGGCATG
Found at i:14781348 original size:28 final size:30
Alignment explanation
Indices: 14781278--14781670 Score: 122
Period size: 29 Copynumber: 13.5 Consensus size: 30
14781268 CCAGGGGCAG
14781278 AATGGTAATTTTTAGGAAGTTCGAGGTTGAA
1 AATGGTAATTTTT-GGAAGTTCGAGGTTGAA
*
14781309 AATGG-AATTTTTGGACA-TTCGGGGTT-AA
1 AATGGTAATTTTTGGA-AGTTCGAGGTTGAA
* *
14781337 AATGGTAATTTTGGGAAAGTT-TA-G-T--A
1 AATGGTAATTTTTGG-AAGTTCGAGGTTGAA
* ** *
14781363 CATGG-AATTTTTGGAAGTTTAAGGGT-AA
1 AATGGTAATTTTTGGAAGTTCGAGGTTGAA
* * *
14781391 AATGGTAATTTTAGGTAAGTAT-G-GGGTCAA
1 AATGGTAATTTTTGG-AAGT-TCGAGGTTGAA
** * * *
14781421 GAAT-AAAATTTTTGGATGTTTGAGGGT-AA
1 -AATGGTAATTTTTGGAAGTTCGAGGTTGAA
* * **
14781450 AATGATAATTTTGGGAAAGTTC-AGGGTCAAA
1 AATGGTAATTTTTGG-AAGTTCGA-GGTTGAA
* *
14781481 AATGG-AATTTTTGGAAG-TCTAAGGGT-AA
1 AATGGTAATTTTTGGAAGTTC-GAGGTTGAA
* * **
14781509 AATGGTAATATTTGGGAAGTTTG-GAGTCAAAA
1 AATGGTAAT-TTTTGGAAGTTCGAG-GT-TGAA
* * * *
14781541 AATTG-AATTTTTAGACA-TTCGGGGGT-AA
1 AATGGTAATTTTTGGA-AGTTCGAGGTTGAA
* * **
14781569 AATGGTAATTTTGGGAAGTTTG-GGTCAAA
1 AATGGTAATTTTTGGAAGTTCGAGGTTGAA
* * *
14781598 AATAG-AATTTTTGGAAG-TCAAGG-GGTAA
1 AATGGTAATTTTTGGAAGTTCGAGGTTG-AA
*
14781626 AATGGTAATTTTTGGCAAGTTC-AGGGTGAA
1 AATGGTAATTTTTGG-AAGTTCGAGGTTGAA
14781656 AATGG-AATTTTTGGA
1 AATGGTAATTTTTGGA
14781671 CATTTGGTAA
Statistics
Matches: 275, Mismatches: 49, Indels: 79
0.68 0.12 0.20
Matches are distributed among these distances:
24 5 0.02
25 9 0.03
26 6 0.02
27 3 0.01
28 55 0.20
29 92 0.33
30 75 0.27
31 24 0.09
32 6 0.02
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (30 bp):
AATGGTAATTTTTGGAAGTTCGAGGTTGAA
Found at i:14781348 original size:59 final size:57
Alignment explanation
Indices: 14781278--14781755 Score: 275
Period size: 59 Copynumber: 8.4 Consensus size: 57
14781268 CCAGGGGCAG
* *
14781278 AATGGTAATTTTTAGG-AAGTTCGAGGTTGAAAATGGAATTTTTGGACATTCGGGGTTAA
1 AATGGTAA-TTTTGGGAAAGTTCGAGGTTAAAAATGGAATTTTTGGA-ATTCGGGG-TAA
* * **
14781337 AATGGTAATTTTGGGAAAGTT-TA-G-T--ACATGGAATTTTTGGAAGTTTAAGGGTAA
1 AATGGTAATTTTGGGAAAGTTCGAGGTTAAAAATGGAATTTTTGGAA--TTCGGGGTAA
* * * * * ** * *
14781391 AATGGTAATTTTAGGTAAGTAT-GGGGTCAAGAATAAAATTTTTGGATGTTTGAGGGTAA
1 AATGGTAATTTTGGGAAAGT-TCGAGGTTAAAAATGGAATTTTTGGA-ATTCG-GGGTAA
* * **
14781450 AATGATAATTTTGGGAAAGTTC-AGGGTCAAAAATGGAATTTTTGGAAGTCTAAGGGTAA
1 AATGGTAATTTTGGGAAAGTTCGA-GGTTAAAAATGGAATTTTTGGAA-T-TCGGGGTAA
* * * *
14781509 AATGGTAATATTTGGG-AAGTTTG-GAGTCAAAAAATTGAATTTTTAGACATTCGGGGGTAA
1 AATGGTAAT-TTTGGGAAAGTTCGAG-GT-TAAAAATGGAATTTTTGGA-ATTC-GGGGTAA
* * * *
14781569 AATGGTAATTTTGGG-AAGTTTG-GGTCAAAAATAGAATTTTTGGAAGTCAAGGGGTAA
1 AATGGTAATTTTGGGAAAGTTCGAGGTTAAAAATGGAATTTTTGGAATTC--GGGGTAA
* * * *
14781626 AATGGTAATTTTTGGCAAGTTC-AGGGTGAAAATGGAATTTTTGGACA-T-----T--
1 AATGGTAATTTTGGGAAAGTTCGAGGTTAAAAATGGAATTTTTGGA-ATTCGGGGTAA
* * * *
14781675 --TGGTAATTATGGGAAAGTTTGAGGTCAAAAATGGAATTTTTGGAAATTCGAGGTAA
1 AATGGTAATTTTGGGAAAGTTCGAGGTTAAAAATGGAATTTTTGG-AATTCGGGGTAA
*
14781731 AATGGTAATTTTTGTG-AAGTTCGAG
1 AATGGTAA-TTTTGGGAAAGTTCGAG
14781756 TGCAATAATG
Statistics
Matches: 327, Mismatches: 55, Indels: 75
0.72 0.12 0.16
Matches are distributed among these distances:
47 16 0.05
48 20 0.06
49 2 0.01
51 1 0.00
53 1 0.00
54 37 0.11
55 6 0.02
56 5 0.02
57 38 0.12
58 51 0.16
59 110 0.34
60 39 0.12
61 1 0.00
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (57 bp):
AATGGTAATTTTGGGAAAGTTCGAGGTTAAAAATGGAATTTTTGGAATTCGGGGTAA
Found at i:14781515 original size:118 final size:116
Alignment explanation
Indices: 14781314--14781637 Score: 358
Period size: 118 Copynumber: 2.8 Consensus size: 116
14781304 TTGAAAATGG
* * *
14781314 AATTTTTGGACATTCG-GGGTTAAAATGGTAATTTTGGGAAAGTTTA--GT---ACATGGAATTT
1 AATTTTTAGACATTCGAGGG-TAAAATGATAATTTTGGG-AAG-TTAGGGTCAAAAATGGAATTT
* * * *
14781373 TTGGAAGTTTAAGGGTAAAATGGTAATTTTAGGTAAGTATGGGGTC-AAGAATAA
63 TTGGAAGTCTAAGGGTAAAATGGTAATTTT-GGGAAGTATGGAGTCAAAAAATAA
* ** *
14781427 AATTTTTGGATGTTTGAGGGTAAAATGATAATTTTGGGAAAGTTCAGGGTCAAAAATGGAATTTT
1 AATTTTTAGACATTCGAGGGTAAAATGATAATTTTGGG-AAGTT-AGGGTCAAAAATGGAATTTT
* **
14781492 TGGAAGTCTAAGGGTAAAATGGTAATATTTGGGAAGTTTGGAGTCAAAAAATTG
64 TGGAAGTCTAAGGGTAAAATGGTAAT-TTTGGGAAGTATGGAGTCAAAAAATAA
* * * *
14781546 AATTTTTAGACATTCGGGGGTAAAATGGTAATTTTGGGAAGTTTGGGTCAAAAATAGAATTTTTG
1 AATTTTTAGACATTCGAGGGTAAAATGATAATTTTGGGAAGTTAGGGTCAAAAATGGAATTTTTG
14781611 GAAGTC-AAGGGGTAAAATGGTAATTTT
66 GAAGTCTAA-GGGTAAAATGGTAATTTT
14781638 TGGCAAGTTC
Statistics
Matches: 181, Mismatches: 20, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
112 2 0.01
113 35 0.19
114 3 0.02
115 2 0.01
116 5 0.03
117 41 0.23
118 53 0.29
119 40 0.22
ACGTcount: A:0.34, C:0.04, G:0.27, T:0.35
Consensus pattern (116 bp):
AATTTTTAGACATTCGAGGGTAAAATGATAATTTTGGGAAGTTAGGGTCAAAAATGGAATTTTTG
GAAGTCTAAGGGTAAAATGGTAATTTTGGGAAGTATGGAGTCAAAAAATAA
Found at i:14781668 original size:29 final size:27
Alignment explanation
Indices: 14781278--14781807 Score: 198
Period size: 30 Copynumber: 18.6 Consensus size: 27
14781268 CCAGGGGCAG
*
14781278 AATGGTAATTTTTAGGAAGTTCGAGGTTGAA
1 AATGG-AATTTTT-GGAAGTTC-AGGGT-AA
*
14781309 AATGGAATTTTTGGACA-TTCGGGGTTAA
1 AATGGAATTTTTGGA-AGTTCAGGG-TAA
* *
14781337 AATGGTAATTTTGGGAAAGTTTA--GT-A
1 AATGG-AATTTTTGG-AAGTTCAGGGTAA
* *
14781363 CATGGAATTTTTGGAAGTTTAAGGGTAA
1 AATGGAATTTTTGGAAG-TTCAGGGTAA
* *
14781391 AATGGTAATTTTAGGTAAGTAT-GGGGTCAA
1 AATGG-AATTTTTGG-AAGT-TCAGGGT-AA
** * *
14781421 GAATAAAATTTTTGGATGTTTGAGGGTAA
1 -AATGGAATTTTTGGAAG-TTCAGGGTAA
* *
14781450 AATGATAATTTTGGGAAAGTTCAGGGTCAAA
1 AATG-GAATTTTTGG-AAGTTCAGGGT--AA
*
14781481 AATGGAATTTTTGGAAGTCTAAGGGTAA
1 AATGGAATTTTTGGAAGT-TCAGGGTAA
* *
14781509 AATGGTAATATTTGGGAAGTT-TGGAGTCAAAA
1 AATGG-AAT-TTTTGGAAGTTCAGG-GT---AA
* * *
14781541 AATTGAATTTTTAGACA-TTCGGGGGTAA
1 AATGGAATTTTTGGA-AGTTC-AGGGTAA
* *
14781569 AATGGTAATTTTGGGAAGTT-TGGGTCAAA
1 AATGG-AATTTTTGGAAGTTCAGGGT--AA
*
14781598 AATAGAATTTTTGGAAG-TCAAGGGGTAA
1 AATGGAATTTTTGGAAGTTC-A-GGGTAA
14781626 AATGGTAATTTTTGGCAAGTTCAGGGTGAA
1 AATGG-AATTTTTGG-AAGTTCAGGGT-AA
*
14781656 AATGGAATTTTTGGACA-TT--TGGTAA
1 AATGGAATTTTTGGA-AGTTCAGGGTAA
* ** *
14781681 TTATGGGAAAGTTT-G-AGGTCA----AA
1 -AAT-GGAATTTTTGGAAGTTCAGGGTAA
*
14781704 AATGGAATTTTTGGAAATTC-GAGGTAA
1 AATGGAATTTTTGGAAGTTCAG-GGTAA
* *
14781731 AATGGTAATTTTTGTGAAGTTCGAGTGCAA
1 AATGG-AATTTTTG-GAAGTTC-AGGGTAA
* *
14781761 TAATGTAAATTTTGGAAAGTTCAAGGGTCAA
1 -AATGGAATTTTTGG-AAGTTC-AGGGT-AA
*
14781792 AATGTAATTTTTGGAA
1 AATGGAATTTTTGGAA
14781808 TTTTTAAGGG
Statistics
Matches: 381, Mismatches: 57, Indels: 124
0.68 0.10 0.22
Matches are distributed among these distances:
21 7 0.02
22 3 0.01
23 5 0.01
24 4 0.01
25 14 0.04
26 11 0.03
27 22 0.06
28 62 0.16
29 107 0.28
30 109 0.29
31 29 0.08
32 8 0.02
ACGTcount: A:0.34, C:0.04, G:0.27, T:0.34
Consensus pattern (27 bp):
AATGGAATTTTTGGAAGTTCAGGGTAA
Found at i:14781817 original size:30 final size:30
Alignment explanation
Indices: 14781697--14781846 Score: 121
Period size: 30 Copynumber: 5.0 Consensus size: 30
14781687 GAAAGTTTGA
* *
14781697 GGTCAAAAATGGAATTTTTGGAAA-TTCGA-
1 GGTC-AAAATGTAATTTTTGGAAAGTTCAAG
*
14781726 GGT-AAAATGGTAATTTTTGTG-AAGTTCGAG
1 GGTCAAAAT-GTAATTTTTG-GAAAGTTCAAG
* *
14781756 TG-CAATAATGTAAATTTTGGAAAGTTCAAG
1 GGTCAA-AATGTAATTTTTGGAAAGTTCAAG
** *
14781786 GGTCAAAATGTAATTTTTGGAATTTTTAAG
1 GGTCAAAATGTAATTTTTGGAAAGTTCAAG
* * * *
14781816 GGTCAAAATATGATTTTTAGACAGTTCAAG
1 GGTCAAAATGTAATTTTTGGAAAGTTCAAG
14781846 G
1 G
14781847 ACCTTCTACG
Statistics
Matches: 97, Mismatches: 16, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
27 5 0.05
28 11 0.11
29 10 0.10
30 65 0.67
31 6 0.06
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.35
Consensus pattern (30 bp):
GGTCAAAATGTAATTTTTGGAAAGTTCAAG
Found at i:14783186 original size:6 final size:6
Alignment explanation
Indices: 14783159--14783228 Score: 51
Period size: 6 Copynumber: 12.2 Consensus size: 6
14783149 GACTTTGTTT
* * *
14783159 ATTTAA ATTTAGA A--TAA TTTTAA ATTTAA ATATAA ATTTAA A-ATAA
1 ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
*
14783205 ATTT-A ATCTTAA A-ATAA ATTTAA A
1 ATTTAA AT-TTAA ATTTAA ATTTAA A
14783229 ATGGATTTAG
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
4 1 0.02
5 13 0.27
6 31 0.63
7 4 0.08
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (6 bp):
ATTTAA
Found at i:14783197 original size:29 final size:28
Alignment explanation
Indices: 14783162--14783230 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 28
14783152 TTTGTTTATT
* *
14783162 TAAATTTAGAATAATTTTAAAT-TTAAATA
1 TAAATTTAAAATAAATTT-AATCTTAAA-A
14783191 TAAATTTAAAATAAATTTAATCTTAAAA
1 TAAATTTAAAATAAATTTAATCTTAAAA
14783219 TAAATTTAAAAT
1 TAAATTTAAAAT
14783231 GGATTTAGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 16 0.43
29 21 0.57
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (28 bp):
TAAATTTAAAATAAATTTAATCTTAAAA
Found at i:14783198 original size:18 final size:17
Alignment explanation
Indices: 14783159--14783228 Score: 71
Period size: 17 Copynumber: 4.4 Consensus size: 17
14783149 GACTTTGTTT
*
14783159 ATTTAAATTTAGAATAA
1 ATTTAAATTTAAAATAA
*
14783176 TTTTAAATTT-AAAT--
1 ATTTAAATTTAAAATAA
14783190 A--TAAATTTAAAATAA
1 ATTTAAATTTAAAATAA
14783205 ATTT-AATCTTAAAATAA
1 ATTTAAAT-TTAAAATAA
14783222 ATTTAAA
1 ATTTAAA
14783229 ATGGATTTAG
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
12 7 0.16
13 4 0.09
15 1 0.02
16 6 0.14
17 23 0.53
18 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:14783230 original size:11 final size:12
Alignment explanation
Indices: 14783179--14783210 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
14783169 AGAATAATTT
14783179 TAAATTTAAATA
1 TAAATTTAAATA
14783191 TAAATTTAAA-A
1 TAAATTTAAATA
14783202 TAAATTTAA
1 TAAATTTAA
14783211 TCTTAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAATTTAAATA
Found at i:14786250 original size:29 final size:29
Alignment explanation
Indices: 14786217--14786317 Score: 96
Period size: 29 Copynumber: 3.4 Consensus size: 29
14786207 CGAAACTTCT
14786217 AAAAATTACATTTTTGCCCCTAAAAATCCC
1 AAAAATTACATTTTTGCCCCTAAAAAT-CC
* *** * *
14786247 AAAAA-TACATTTTTACCCCCGGACATCA
1 AAAAATTACATTTTTGCCCCTAAAAATCC
** *
14786275 AAAAATCCCATTTTTGACCCTAAAAATTCC
1 AAAAATTACATTTTTGCCCCTAAAAA-TCC
14786305 AAAAATTACATTT
1 AAAAATTACATTT
14786318 CTACCCCCAA
Statistics
Matches: 52, Mismatches: 17, Indels: 4
0.71 0.23 0.05
Matches are distributed among these distances:
28 6 0.12
29 28 0.54
30 18 0.35
ACGTcount: A:0.42, C:0.25, G:0.04, T:0.30
Consensus pattern (29 bp):
AAAAATTACATTTTTGCCCCTAAAAATCC
Found at i:14786349 original size:58 final size:58
Alignment explanation
Indices: 14786209--14786347 Score: 163
Period size: 58 Copynumber: 2.4 Consensus size: 58
14786199 TTTGGCCTCG
* * * * *
14786209 AAACTTCTAAAAATTACATTTTTGCCCCTAAAAATCCCAAAAATACATTTTTACCCCC
1 AAACTTCCAAAAAATCCATTTTTGACCCTAAAAATCCCAAAAATACATTTCTACCCCC
** * *
14786267 GGACAT-CAAAAAATCCCATTTTTGACCCTAAAAATTCCAAAAATTACATTTCTACCCCC
1 AAACTTCCAAAAAAT-CCATTTTTGACCCTAAAAATCCCAAAAA-TACATTTCTACCCCC
*
14786326 AAACTTCCAAAAACTCCATTTT
1 AAACTTCCAAAAAATCCATTTT
14786348 GAACCCCGAA
Statistics
Matches: 65, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
57 6 0.09
58 28 0.43
59 24 0.37
60 7 0.11
ACGTcount: A:0.40, C:0.28, G:0.03, T:0.29
Consensus pattern (58 bp):
AAACTTCCAAAAAATCCATTTTTGACCCTAAAAATCCCAAAAATACATTTCTACCCCC
Found at i:14786478 original size:59 final size:59
Alignment explanation
Indices: 14786363--14786524 Score: 149
Period size: 59 Copynumber: 2.7 Consensus size: 59
14786353 CCGAAACTTT
* * *
14786363 CAAAATT-ACTATTTTACTCTCGGATGTCCAAAAATTCCATTTTTGATCTCAA-TTTTTC
1 CAAAATTAAC-ATTTTACCCTCGGATGTCCAAAAATTCCATTTTTGAACCCAATTTTTTC
*
14786421 CAAAAATTAACATTTTACCCTCGGATGT-CTAAAATGT-CATTTTT-AACCCAAATTTTTTTC
1 C-AAAATTAACATTTTACCCTCGGATGTCCAAAAAT-TCCATTTTTGAACCC-AA-TTTTTTC
* *
14786481 CAAAATTACCATTTTACCC-CTGAGA-GTCCCAAAATTACCATTTT
1 CAAAATTAACATTTTACCCTC-G-GATGTCCAAAAATT-CCATTTT
14786525 ATCCTCGGGT
Statistics
Matches: 87, Mismatches: 6, Indels: 19
0.78 0.05 0.17
Matches are distributed among these distances:
57 3 0.03
58 17 0.20
59 44 0.51
60 17 0.20
61 6 0.07
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (59 bp):
CAAAATTAACATTTTACCCTCGGATGTCCAAAAATTCCATTTTTGAACCCAATTTTTTC
Found at i:14810117 original size:17 final size:17
Alignment explanation
Indices: 14810092--14810147 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
14810082 ACCGAGCCCT
14810092 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
14810109 TTTAGATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* *
14810126 TTTGAAATTGAATTTAAA
1 TTT-AAATTTATTTTAAA
14810144 TTTA
1 TTTA
14810148 TTTTCATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 20 0.59
18 14 0.41
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:14810144 original size:11 final size:11
Alignment explanation
Indices: 14810092--14810147 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
14810082 ACCGAGCCCT
*
14810092 TTTAAATTTAT
1 TTTAAATTTAA
14810103 TTTAAATTTAGA
1 TTTAAATTTA-A
*
14810115 TTT-ATTTTAAA
1 TTTAAATTT-AA
*
14810126 TTTGAAATTGAA
1 TTT-AAATTTAA
14810138 TTTAAATTTA
1 TTTAAATTTA
14810148 TTTTCATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
11 24 0.67
12 9 0.25
13 3 0.08
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:14813418 original size:58 final size:59
Alignment explanation
Indices: 14813338--14813654 Score: 240
Period size: 58 Copynumber: 5.4 Consensus size: 59
14813328 ATGCTCGAGG
* *
14813338 AAAATGGTAATTTTTAGGAAGTTCGAGGTCAAAAATGGAA-TTTTGGACAGTCGAGGGT
1 AAAATGGTAATTTTTGGGAAGTTCGAGGTAAAAAATGGAATTTTTGGACAGTCGAGGGT
* * * *
14813396 AAAATGATAA-TTTTGGGAAAGTTCGGGGTTAAAAA-GGAATTTTTGGA-AGTTTGAGGGT
1 AAAATGGTAATTTTTGGG-AAGTTCGAGGTAAAAAATGGAATTTTTGGACAG-TCGAGGGT
* * *
14813454 AAAATGGTAATTTTTGGGAAGTTCAAAGTAAAAAATGGAATTTTTGGACATTC-AGGGGT
1 AAAATGGTAATTTTTGGGAAGTTCGAGGTAAAAAATGGAATTTTTGGACAGTCGA-GGGT
** ** *** * * *
14813513 AAAATGGTAA-TTTTGGGAAAGTTC-AGGGTTTAGGACAAAAGTTTTGGA-AGTCCAAGGT
1 AAAATGGTAATTTTTGGG-AAGTTCGA-GGTAAAAAATGGAATTTTTGGACAGTCGAGGGT
* * * * * **
14813571 AAAATGGTAGTTTTTAGGAAGTTC-AGGGTCAAAAATTGAATTTTTGGA-AATTTAGTGGT
1 AAAATGGTAATTTTTGGGAAGTTCGA-GGTAAAAAATGGAATTTTTGGACAGTCGAG-GGT
* **
14813630 AAATTGGTAATTTTTTTGAAGTTCG
1 AAAATGGTAATTTTTGGGAAGTTCG
14813655 TGATAATGTA
Statistics
Matches: 205, Mismatches: 41, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
57 12 0.06
58 109 0.53
59 83 0.40
60 1 0.00
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.33
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGGAAGTTCGAGGTAAAAAATGGAATTTTTGGACAGTCGAGGGT
Found at i:14813440 original size:30 final size:31
Alignment explanation
Indices: 14813338--14813542 Score: 102
Period size: 29 Copynumber: 7.0 Consensus size: 31
14813328 ATGCTCGAGG
* * * *
14813338 AAAATGGTAATTTTTAGG-AAGTTCGAGGTC
1 AAAAAGGTAATTTTTGGGAAAGTTCGGGGTT
*
14813368 AAAAATGG-AA-TTTT-GGACAG-TCGAGGG-T
1 AAAAA-GGTAATTTTTGGGAAAGTTCG-GGGTT
* *
14813396 AAAATGATAA-TTTTGGGAAAGTTCGGGGTT
1 AAAAAGGTAATTTTTGGGAAAGTTCGGGGTT
*
14813426 AAAAAGG-AATTTTT-GG-AAGTTTGAGGG-T
1 AAAAAGGTAATTTTTGGGAAAGTTCG-GGGTT
* *** *
14813454 AAAATGGTAATTTTTGGG-AAGTTCAAAGTA
1 AAAAAGGTAATTTTTGGGAAAGTTCGGGGTT
*
14813484 AAAAATGG-AATTTTT-GGACA-TTCAGGGG-T
1 AAAAA-GGTAATTTTTGGGAAAGTTC-GGGGTT
* *
14813513 AAAATGGTAA-TTTTGGGAAAGTTCAGGGTT
1 AAAAAGGTAATTTTTGGGAAAGTTCGGGGTT
14813543 TAGGACAAAA
Statistics
Matches: 131, Mismatches: 25, Indels: 38
0.68 0.13 0.20
Matches are distributed among these distances:
27 1 0.01
28 34 0.26
29 49 0.37
30 43 0.33
31 4 0.03
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (31 bp):
AAAAAGGTAATTTTTGGGAAAGTTCGGGGTT
Found at i:14813572 original size:117 final size:116
Alignment explanation
Indices: 14813338--14813643 Score: 368
Period size: 117 Copynumber: 2.6 Consensus size: 116
14813328 ATGCTCGAGG
* *
14813338 AAAATGGTAATTTTTAGGAAGTTCGAGGTCAAAAATGGAA-TTTTGGACAGTC-GAGGGTAAAAT
1 AAAATGGTAATTTTTAGGAAGTTCAAGGTCAAAAATGGAATTTTTGGACATTCAG-GGGTAAAAT
* * ** *
14813401 GATAATTTTGGGAAAGTTCGGGGTTAAAAAGGAATTTTTGGAAGTTTGAGGGT
65 GGTAATTTTGGGAAAGTTCGGGGTTAAAAA-GAAGTTTTGGAAGTTCCAAGGT
* * *
14813454 AAAATGGTAATTTTTGGGAAGTTCAAAGTAAAAAATGGAATTTTTGGACATTCAGGGGTAAAATG
1 AAAATGGTAATTTTTAGGAAGTTCAAGGTCAAAAATGGAATTTTTGGACATTCAGGGGTAAAATG
* *
14813519 GTAATTTTGGGAAAGTTCAGGGTTTAGGACAA-AAGTTTTGGAAG-TCCAAGGT
66 GTAATTTTGGGAAAGTTC-GGGGTTA--AAAAGAAGTTTTGGAAGTTCCAAGGT
* * * * * * *
14813571 AAAATGGTAGTTTTTAGGAAGTTCAGGGTCAAAAATTGAATTTTTGGAAATTTAGTGGTAAATTG
1 AAAATGGTAATTTTTAGGAAGTTCAAGGTCAAAAATGGAATTTTTGGACATTCAGGGGTAAAATG
14813636 GTAATTTT
66 GTAATTTT
14813644 TTTGAAGTTC
Statistics
Matches: 163, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
116 36 0.22
117 106 0.65
118 18 0.11
120 3 0.02
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (116 bp):
AAAATGGTAATTTTTAGGAAGTTCAAGGTCAAAAATGGAATTTTTGGACATTCAGGGGTAAAATG
GTAATTTTGGGAAAGTTCGGGGTTAAAAAGAAGTTTTGGAAGTTCCAAGGT
Found at i:14813694 original size:30 final size:30
Alignment explanation
Indices: 14813659--14813721 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
14813649 AGTTCGTGAT
14813659 AATGTAAATTTTGGAAAGTTTGGGGGTCAA
1 AATGTAAATTTTGGAAAGTTTGGGGGTCAA
*
14813689 AATGTAACTTTTGGAAAGTTTGGGGGTCAA
1 AATGTAAATTTTGGAAAGTTTGGGGGTCAA
14813719 AAT
1 AAT
14813722 ATGATTTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (30 bp):
AATGTAAATTTTGGAAAGTTTGGGGGTCAA
Found at i:14813731 original size:30 final size:30
Alignment explanation
Indices: 14813667--14813733 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
14813657 ATAATGTAAA
*
14813667 TTTTGGAAAGTTTGGGGGTCAAAATGTAAC
1 TTTTGGAAAGTTTGGGGGTCAAAATATAAC
* *
14813697 TTTTGGAAAGTTTGGGGGTCAAAATATGAT
1 TTTTGGAAAGTTTGGGGGTCAAAATATAAC
14813727 TTTTGGA
1 TTTTGGA
14813734 CATTTTAGGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.28, C:0.04, G:0.30, T:0.37
Consensus pattern (30 bp):
TTTTGGAAAGTTTGGGGGTCAAAATATAAC
Found at i:14815640 original size:17 final size:16
Alignment explanation
Indices: 14815618--14815651 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
14815608 GACTTTTGTT
14815618 TTTTTAAATTTAGAATA
1 TTTTTAAATTTA-AATA
14815635 TTTTTAAATTTAAATA
1 TTTTTAAATTTAAATA
14815651 T
1 T
14815652 GAATTTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TTTTTAAATTTAAATA
Found at i:14815668 original size:12 final size:12
Alignment explanation
Indices: 14815638--14815713 Score: 61
Period size: 12 Copynumber: 6.4 Consensus size: 12
14815628 TAGAATATTT
14815638 TTAAATTTAAA-
1 TTAAATTTAAAC
*
14815649 TATGAATTTAAAC
1 T-TAAATTTAAAC
14815662 TTAAA-TTAAAC
1 TTAAATTTAAAC
14815673 TTAAATTTTAAAAC
1 TTAAA-TTT-AAAC
*
14815687 --AAATTTAAAA
1 TTAAATTTAAAC
* *
14815697 ATAAATTTAATC
1 TTAAATTTAAAC
14815709 TTAAA
1 TTAAA
14815714 ATAAATTTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
10 3 0.06
11 15 0.29
12 27 0.52
13 3 0.06
14 4 0.08
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.39
Consensus pattern (12 bp):
TTAAATTTAAAC
Found at i:14815694 original size:29 final size:28
Alignment explanation
Indices: 14815662--14815726 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
14815652 GAATTTAAAC
* *
14815662 TTAAATTAAACTTAAATTTTAAAACAAAT
1 TTAAAATAAA-TTAAATCTTAAAACAAAT
* *
14815691 TTAAAAATAAATTTAATCTTAAAATAAAT
1 TT-AAAATAAATTAAATCTTAAAACAAAT
14815720 TTAAAAT
1 TTAAAAT
14815727 GGGTTTAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 5 0.16
29 19 0.61
30 7 0.23
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (28 bp):
TTAAAATAAATTAAATCTTAAAACAAAT
Found at i:14816511 original size:209 final size:207
Alignment explanation
Indices: 14816089--14816744 Score: 807
Period size: 209 Copynumber: 3.1 Consensus size: 207
14816079 TTTCAATCCG
* * *
14816089 CTTCTGAGTATCTTATCAGGAAGATAACCATTTTATTGCTTCGATCTGCTTCTCAATATCTCATC
1 CTTCTCAGTATCTCATCAGGAAGGTAACCATTTTATTGCTTCGA-CTGCTTCTCAATATCTCATC
* * * *
14816154 AGGCAGTTGGGGTTCGAAGATTCGCTTACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
65 AGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
* * ** * * *
14816219 GTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCTGCTTCTCAGTATCTCATCAAGAAG
130 GTATCTCATCAGGAAGATGACCGCATCGCTTGTTT-GATCCACTTCTCTGTGTCTCATCAGGAAG
* * * *
14816284 GCAAATTTGGTCCA
194 ACAGATCTGGTTCA
* * *
14816298 CTTCTCAGTATCTCATTAGGAAGCTAACCATTTTATTGCTTCGACATGCTTCTTAATATCTCATC
1 CTTCTCAGTATCTCATCAGGAAGGTAACCATTTTATTGCTTCGAC-TGCTTCTCAATATCTCATC
* *
14816363 AAGAAGCTGGGGTTCGAAGATTTGCTCATTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
65 AGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
* * *
14816428 GTATCTTATCAGGAAGATGACCGCTTCGCTTAGTTTGATCCACTTCTCTGTGTCTTATCAGGAAG
130 GTATCTCATCAGGAAGATGACCGCATCGCTT-GTTTGATCCACTTCTCTGTGTCTCATCAGGAAG
*
14816493 ACGGATCTGGTTCA
194 ACAGATCTGGTTCA
* *** * *
14816507 CTTCT-ATGTATCTTATCAGGAAGGTAACTGCTTTATTACTTCGACCTGCTTCTCAATATCTTAT
1 CTTCTCA-GTATCTCATCAGGAAGGTAACCATTTTATTGCTTCGA-CTGCTTCTCAATATCTCA-
* * ** * *
14816571 TC-GGAAGCTGGGGTTTGAAGATTCT-CTCACTTTGAGCCTGATTTTATTGATTTGGTCTTCTTC
63 TCAGGAAGCTGGGGTTCGAAGATT-TGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTC
* *
14816634 TCAGTATCTCATCAAGAAGAAGACCGCATCGCTTGTTTTGATCCACTTCTCTGTGTCTCATCAGG
127 TCAGTATCTCATCAGGAAGATGACCGCATCGCTTG-TTTGATCCACTTCTCTGTGTCTCATCAGG
*
14816699 AAGACAGATCTGGTTTA
191 AAGACAGATCTGGTTCA
*
14816716 TTTCTCTA-TATCTCATCAGGAAGGTAACC
1 CTTCTC-AGTATCTCATCAGGAAGGTAACC
14816745 GCTTTATGTT
Statistics
Matches: 385, Mismatches: 53, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
208 3 0.01
209 373 0.97
210 8 0.02
211 1 0.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (207 bp):
CTTCTCAGTATCTCATCAGGAAGGTAACCATTTTATTGCTTCGACTGCTTCTCAATATCTCATCA
GGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCAG
TATCTCATCAGGAAGATGACCGCATCGCTTGTTTGATCCACTTCTCTGTGTCTCATCAGGAAGAC
AGATCTGGTTCA
Found at i:14818609 original size:23 final size:24
Alignment explanation
Indices: 14818567--14818611 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
14818557 GTTGGATTCA
14818567 AATTAAATTCTAAAAGATAATTAG
1 AATTAAATTCTAAAAGATAATTAG
14818591 AATTAAA-TCTAAACA-ATAATT
1 AATTAAATTCTAAA-AGATAATT
14818612 CCTTAATTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (24 bp):
AATTAAATTCTAAAAGATAATTAG
Found at i:14819660 original size:10 final size:10
Alignment explanation
Indices: 14819636--14819674 Score: 60
Period size: 10 Copynumber: 3.7 Consensus size: 10
14819626 TGTCTTCTTC
14819636 TTTTTTTCTCAA
1 TTTTTTT-TC-A
14819648 TTTTTTTTCA
1 TTTTTTTTCA
14819658 TTTTTTTTCA
1 TTTTTTTTCA
14819668 TTTTTTT
1 TTTTTTT
14819675 CTTTTCGACT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.67
11 2 0.07
12 7 0.26
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTTTTTCA
Found at i:14820563 original size:12 final size:11
Alignment explanation
Indices: 14820532--14820574 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
14820522 CATAATTAAA
14820532 AAAATTAAAAAT
1 AAAA-TAAAAAT
*
14820544 AAAATAAAACT
1 AAAATAAAAAT
14820555 AAAACTAAAAAT
1 AAAA-TAAAAAT
*
14820567 GAAATAAA
1 AAAATAAA
14820575 TAAACTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 14 0.52
12 13 0.48
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:14833404 original size:21 final size:18
Alignment explanation
Indices: 14833364--14833407 Score: 52
Period size: 21 Copynumber: 2.3 Consensus size: 18
14833354 GGGGTATGGG
*
14833364 TTTTATTTGGTTTGGGTA
1 TTTTATTTGGTTTGGCTA
14833382 TTTTATTTTGGATGTTGGCTA
1 TTTTA-TTTGG-T-TTGGCTA
14833403 TTTTA
1 TTTTA
14833408 GGAAAATGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 5 0.23
19 5 0.23
20 1 0.05
21 11 0.50
ACGTcount: A:0.14, C:0.02, G:0.23, T:0.61
Consensus pattern (18 bp):
TTTTATTTGGTTTGGCTA
Found at i:14841161 original size:437 final size:437
Alignment explanation
Indices: 14840347--14841223 Score: 1727
Period size: 437 Copynumber: 2.0 Consensus size: 437
14840337 CCCCAAATTC
14840347 GAATTTAGCTAATCTCTTCACACATGTCTTCAATTTAATCCTTCTTTTGCTTGCTTTTAAGTAAA
1 GAATTTAGCTAATCTCTTCACACATGTCTTCAATTTAATCCTTCTTTTGCTTGCTTTTAAGTAAA
14840412 CAAGCATCAATTTGTGTACCGGATAAGAAATGAAAGAAATTAGAAGTATTTTTCCTTCAAAATTA
66 CAAGCATCAATTTGTGTACCGGATAAGAAATGAAAGAAATTAGAAGTATTTTTCCTTCAAAATTA
14840477 ATCAAAATACACAAATAAATTGCTTAAATAATTTACTTATCACTCTACTAGTGATATGTATATGC
131 ATCAAAATACACAAATAAATTGCTTAAATAATTTACTTATCACTCTACTAGTGATATGTATATGC
14840542 CACAATGTTTAAATAATTATGCGAAGCGTAATATCATAAAATCTTTTTGTTGTTAAAAACTTTTT
196 CACAATGTTTAAATAATTATGCGAAGCGTAATATCATAAAATCTTTTTGTTGTTAAAAACTTTTT
14840607 GTCGCACTTATCATGTTTTAAAAAGGAAAATGAAAAGATTAGAATGGGAAAAAACATTAAGGCTT
261 GTCGCACTTATCATGTTTTAAAAAGGAAAATGAAAAGATTAGAATGGGAAAAAACATTAAGGCTT
14840672 GCCATATTGTGTGAATTTGAGGTTTCTACTTGAATTTGGTTCATAAAATTAATTTCGAACAAGAT
326 GCCATATTGTGTGAATTTGAGGTTTCTACTTGAATTTGGTTCATAAAATTAATTTCGAACAAGAT
14840737 GAGAAGGGGAAAAAACCTGCATTTATAAGAAGTGTTATGACCACATG
391 GAGAAGGGGAAAAAACCTGCATTTATAAGAAGTGTTATGACCACATG
14840784 GAATTTAGCTAATCTCTTCACACATGTCTTCAATTTAATCCTTCTTTTGCTTGCTTTTAAGTAAA
1 GAATTTAGCTAATCTCTTCACACATGTCTTCAATTTAATCCTTCTTTTGCTTGCTTTTAAGTAAA
14840849 CAAGCATCAATTTGTGTACCGGATAAGAAATGAAAGAAATTAGAAGTATTTTTCCTTCAAAATTA
66 CAAGCATCAATTTGTGTACCGGATAAGAAATGAAAGAAATTAGAAGTATTTTTCCTTCAAAATTA
14840914 ATCAAAATACACAAATAAATTGCTTAAATAATTTACTTATCACTCTACTAGTGATATGTATATGC
131 ATCAAAATACACAAATAAATTGCTTAAATAATTTACTTATCACTCTACTAGTGATATGTATATGC
14840979 CACAATGTTTAAATAATTATGCGAAGCGTAATATCATAAAATCTTTTTGTTGTTAAAAACTTTTT
196 CACAATGTTTAAATAATTATGCGAAGCGTAATATCATAAAATCTTTTTGTTGTTAAAAACTTTTT
*
14841044 GTCGCACTTATCATGTTTTAAAAAGGAAAATGACAAGATTAGAATGGGAAAAAACATTAAGGCTT
261 GTCGCACTTATCATGTTTTAAAAAGGAAAATGAAAAGATTAGAATGGGAAAAAACATTAAGGCTT
*
14841109 GCCATATTGTGTGAATTTGATGTTTCTACTTGAATTTGGTTCATAAAATTAATTTCGAACAAGAT
326 GCCATATTGTGTGAATTTGAGGTTTCTACTTGAATTTGGTTCATAAAATTAATTTCGAACAAGAT
*
14841174 TAGAAGGGGAAAAAACCTGCATTTATAAGAAGTGTTATGACCACATG
391 GAGAAGGGGAAAAAACCTGCATTTATAAGAAGTGTTATGACCACATG
14841221 GAA
1 GAA
14841224 CTAGAATGCG
Statistics
Matches: 437, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
437 437 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (437 bp):
GAATTTAGCTAATCTCTTCACACATGTCTTCAATTTAATCCTTCTTTTGCTTGCTTTTAAGTAAA
CAAGCATCAATTTGTGTACCGGATAAGAAATGAAAGAAATTAGAAGTATTTTTCCTTCAAAATTA
ATCAAAATACACAAATAAATTGCTTAAATAATTTACTTATCACTCTACTAGTGATATGTATATGC
CACAATGTTTAAATAATTATGCGAAGCGTAATATCATAAAATCTTTTTGTTGTTAAAAACTTTTT
GTCGCACTTATCATGTTTTAAAAAGGAAAATGAAAAGATTAGAATGGGAAAAAACATTAAGGCTT
GCCATATTGTGTGAATTTGAGGTTTCTACTTGAATTTGGTTCATAAAATTAATTTCGAACAAGAT
GAGAAGGGGAAAAAACCTGCATTTATAAGAAGTGTTATGACCACATG
Found at i:14874376 original size:11 final size:11
Alignment explanation
Indices: 14874362--14874386 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14874352 TTAAATTAAG
14874362 ATAAAATAAAA
1 ATAAAATAAAA
14874373 ATAAAATAAAA
1 ATAAAATAAAA
14874384 ATA
1 ATA
14874387 GTAAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:14883154 original size:24 final size:24
Alignment explanation
Indices: 14883121--14883171 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
14883111 AGAAATAATC
* **
14883121 TTTCAGTTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCCATTTATTTG
14883145 TTTCAATTAAACTCCATTTATTTG
1 TTTCAATTAAACTCCATTTATTTG
14883169 TTT
1 TTT
14883172 GAGTCAAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.14, G:0.08, T:0.55
Consensus pattern (24 bp):
TTTCAATTAAACTCCATTTATTTG
Found at i:14883180 original size:24 final size:24
Alignment explanation
Indices: 14883137--14883182 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
14883127 TTAAACTCTG
*
14883137 TTTATTTGTTTCAATTAAACTCCA
1 TTTATTTGTTTCAATCAAACTCCA
* *
14883161 TTTATTTGTTTGAGTCAAACTC
1 TTTATTTGTTTCAATCAAACTC
14883183 GTATTACTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.09, T:0.50
Consensus pattern (24 bp):
TTTATTTGTTTCAATCAAACTCCA
Found at i:14887620 original size:24 final size:24
Alignment explanation
Indices: 14887587--14887637 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
14887577 AGAAATAATC
* *
14887587 TTTCAGTTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCCGTTTATTTG
14887611 TTTCAATTAAACTCCGTTTATTTG
1 TTTCAATTAAACTCCGTTTATTTG
14887635 TTT
1 TTT
14887638 GAGTCAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.14, G:0.10, T:0.55
Consensus pattern (24 bp):
TTTCAATTAAACTCCGTTTATTTG
Found at i:14887646 original size:24 final size:24
Alignment explanation
Indices: 14887595--14887648 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
14887585 TCTTTCAGTT
* *
14887595 AAACTCTGTTTATTTGTTTCAATT
1 AAACTCCGTTTATTTGTTTCAATC
* *
14887619 AAACTCCGTTTATTTGTTTGAGTC
1 AAACTCCGTTTATTTGTTTCAATC
14887643 AAACTC
1 AAACTC
14887649 GTATTACTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.11, T:0.46
Consensus pattern (24 bp):
AAACTCCGTTTATTTGTTTCAATC
Found at i:14894321 original size:15 final size:16
Alignment explanation
Indices: 14894301--14894334 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14894291 ATTTTCGTAC
14894301 AACTCAA-ATTAATTT
1 AACTCAACATTAATTT
*
14894316 AACTCAACTTTAATTT
1 AACTCAACATTAATTT
14894332 AAC
1 AAC
14894335 GATAGAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (16 bp):
AACTCAACATTAATTT
Found at i:14901003 original size:20 final size:24
Alignment explanation
Indices: 14900959--14901003 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 24
14900949 CAACAAAATA
14900959 AAGCATTTAATGTTTCAATTTAAC
1 AAGCATTTAATGTTTCAATTTAAC
14900983 AAGC-TTTAAT-TTT-AA-TTAAC
1 AAGCATTTAATGTTTCAATTTAAC
14901003 A
1 A
14901004 CAAATCTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.29
21 2 0.10
22 3 0.14
23 6 0.29
24 4 0.19
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (24 bp):
AAGCATTTAATGTTTCAATTTAAC
Found at i:14903056 original size:29 final size:29
Alignment explanation
Indices: 14902981--14903057 Score: 68
Period size: 29 Copynumber: 2.6 Consensus size: 29
14902971 ACATTCGAGG
*
14902981 GTAAAATGGTAATTTTTGGAAAAATCGGGA
1 GTAAAAAGGTAATTTTTGG-AAAATCGGGA
* * *
14903011 -TCAAAAAGGGAACTTTTGG-ACATCCGGGA
1 GT-AAAAAGGTAATTTTTGGAAAAT-CGGGA
*
14903040 GTAAAACGGTAATTTTTG
1 GTAAAAAGGTAATTTTTG
14903058 AAAGTTTCGG
Statistics
Matches: 37, Mismatches: 7, Indels: 7
0.73 0.14 0.14
Matches are distributed among these distances:
28 3 0.08
29 19 0.51
30 15 0.41
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (29 bp):
GTAAAAAGGTAATTTTTGGAAAATCGGGA
Found at i:14903098 original size:29 final size:28
Alignment explanation
Indices: 14903054--14903221 Score: 167
Period size: 29 Copynumber: 5.9 Consensus size: 28
14903044 AACGGTAATT
* *
14903054 TTTGAAAGTTTCGGGGTCAAAAATGGAAG
1 TTTGGAAGTTTCGGGGT-AAAAATGGAAA
*
14903083 TTTGGAAGTTTGGGGGTAAAAATGGAAA
1 TTTGGAAGTTTCGGGGTAAAAATGGAAA
* * *
14903111 TTTGGAAGTTTGGGGGTAAAAATGTAAT
1 TTTGGAAGTTTCGGGGTAAAAATGGAAA
* *
14903139 TTTCAGAAGTTTCGGGGTTAAAATGGAATA
1 TTT-GGAAGTTTCGGGGTAAAAATGGAA-A
* * * *
14903169 TTTGGAATTTTAGGGGTAAAAATGTAATT
1 TTTGGAAGTTTCGGGGTAAAAATGGAA-A
*
14903198 TTTGGAAG-TTCGAGGGTACAAATG
1 TTTGGAAGTTTCG-GGGTAAAAATG
14903222 TAATTTTTAG
Statistics
Matches: 117, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
28 42 0.36
29 72 0.62
30 3 0.03
ACGTcount: A:0.33, C:0.04, G:0.30, T:0.33
Consensus pattern (28 bp):
TTTGGAAGTTTCGGGGTAAAAATGGAAA
Found at i:14903148 original size:57 final size:57
Alignment explanation
Indices: 14903054--14903237 Score: 192
Period size: 58 Copynumber: 3.2 Consensus size: 57
14903044 AACGGTAATT
* * * * * *
14903054 TTTGAAAGTTTCGGGGTCAAAAATGGAAGTTTGGAAGTTTGGGGGTAAAAATGGAA-A
1 TTTGGAAGTTTAGGGGT-AAAAATGTAATTTTAGAAGTTTCGGGGTAAAAATGGAATA
* *
14903111 TTTGGAAGTTTGGGGGTAAAAATGTAATTTTCAGAAGTTTCGGGGTTAAAATGGAATA
1 TTTGGAAGTTTAGGGGTAAAAATGTAATTTT-AGAAGTTTCGGGGTAAAAATGGAATA
* * * * *
14903169 TTTGGAATTTTAGGGGTAAAAATGTAATTTTTGGAAG-TTCGAGGGTACAAATGTAATT
1 TTTGGAAGTTTAGGGGTAAAAATGTAA-TTTTAGAAGTTTCG-GGGTAAAAATGGAATA
*
14903227 TTTAGAAGTTT
1 TTTGGAAGTTT
14903238 CAGGACCAAA
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
56 12 0.11
57 40 0.37
58 51 0.48
59 4 0.04
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.35
Consensus pattern (57 bp):
TTTGGAAGTTTAGGGGTAAAAATGTAATTTTAGAAGTTTCGGGGTAAAAATGGAATA
Found at i:14903222 original size:29 final size:28
Alignment explanation
Indices: 14903048--14903236 Score: 157
Period size: 29 Copynumber: 6.6 Consensus size: 28
14903038 GAGTAAAACG
*
14903048 GTAATTTTTGAAAGTTTCGGGGTCAAAAAT
1 GTAATTTTTGGAAG-TTCGGGGT-AAAAAT
* * *
14903078 GGAA-GTTTGGAAGTTTGGGGGTAAAAAT
1 GTAATTTTTGGAAG-TTCGGGGTAAAAAT
* * *
14903106 GGAA-ATTTGGAAGTTTGGGGGTAAAAAT
1 GTAATTTTTGGAAG-TTCGGGGTAAAAAT
** *
14903134 GTAATTTTCAGAAGTTTCGGGGTTAAAAT
1 GTAATTTTTGGAAG-TTCGGGGTAAAAAT
* * * *
14903163 GGAATATTTGGAATTTTAGGGGTAAAAAT
1 GTAATTTTTGGAA-GTTCGGGGTAAAAAT
*
14903192 GTAATTTTTGGAAGTTCGAGGGTACAAAT
1 GTAATTTTTGGAAGTTCG-GGGTAAAAAT
*
14903221 GTAATTTTTAGAAGTT
1 GTAATTTTTGGAAGTT
14903237 TCAGGACCAA
Statistics
Matches: 132, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
28 39 0.30
29 90 0.68
30 3 0.02
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.35
Consensus pattern (28 bp):
GTAATTTTTGGAAGTTCGGGGTAAAAAT
Found at i:14905081 original size:17 final size:18
Alignment explanation
Indices: 14905061--14905104 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
14905051 AAAATTAATT
*
14905061 TAAATTC-AAATTTAAAA
1 TAAATTCTAAATTCAAAA
14905078 TAAA-TCTAAATTCAAAA
1 TAAATTCTAAATTCAAAA
14905095 TAAATT-TAAA
1 TAAATTCTAAA
14905105 AGGGCTCGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 2 0.08
17 21 0.88
18 1 0.04
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (18 bp):
TAAATTCTAAATTCAAAA
Found at i:14905087 original size:23 final size:24
Alignment explanation
Indices: 14905044--14905093 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
14905034 ATTTTTTTTT
* *
14905044 AAATTTGAAAATTAATTTAAATTC
1 AAATTTGAAAATAAATCTAAATTC
14905068 AAATTT-AAAATAAATCTAAATTC
1 AAATTTGAAAATAAATCTAAATTC
14905091 AAA
1 AAA
14905094 ATAAATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (24 bp):
AAATTTGAAAATAAATCTAAATTC
Found at i:14905104 original size:23 final size:23
Alignment explanation
Indices: 14905051--14905098 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
14905041 TTTAAATTTG
* * *
14905051 AAAATTAATTTAAATTCAAATTT
1 AAAATAAATCTAAATTCAAATAT
14905074 AAAATAAATCTAAATTCAAA-AT
1 AAAATAAATCTAAATTCAAATAT
14905096 AAA
1 AAA
14905099 TTTAAAAGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.33
Consensus pattern (23 bp):
AAAATAAATCTAAATTCAAATAT
Found at i:14905991 original size:204 final size:204
Alignment explanation
Indices: 14905403--14907023 Score: 2140
Period size: 204 Copynumber: 8.0 Consensus size: 204
14905393 TCTGGTTTCA
* * * * * * ** *
14905403 TTGACTTGGCCTTCTTCTCTGTATCTCATCAGGAAGATGACCACATCACATGTTTTGATCCACTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAAT-CGCTT
* *** * * * * *
14905468 CTCTATGTTTCATCAGGAAGACGGATTTGGTTCACTTCTCTGTATCTCATCAAGAAGCTAACCAC
65 CTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCAT
* * * **
14905533 TTTATTCCTTAGACCTGCTTCTCAATATCTCATCAAAAAGCTAGGGGTTCGAAGATTTGCTCACA
130 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTA-GGGTTCGAAGATTTGCTCACA
14905598 TCGAGCGTTGGT
194 TCGAGCG-TGGT
* * *
14905610 TTGATTTGGTCTTCTTCTTAGTATCTCATCATGAAGATGACCGCATCGTTTGTTTCAATCTGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAATC-GCTT
* * *
14905675 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTTATCAGGAAACTAACCAT
65 CTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCAT
* *
14905740 TTTATTGCTTCGACCTGCTTTTCAGTATCTCATCAGGAAG-TTGGGTTCGAAGATTTGCTCACAT
130 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACAT
14905804 CGAGCGTGGGT
195 CGAGCGT-GGT
14905815 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAATCGCTTC
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAATCGCTTC
* *
14905880 TTTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCATT
66 TCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATT
14905945 TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCT-GGGTTCGAAGATTTGCTCACATC
131 TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACATC
*
14906009 GAGCGTCGAT
196 GAGCGT-GGT
* * *
14906019 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGAAAGATGACCGCATTGCTTGTTTCAATCCTCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAAT-CGCTT
* * *
14906084 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAGCCAT
65 CTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCAT
* * * *
14906149 TTTATTGCTTCGACCTGGTTCTCAGTATCTTATCAGGAAGTTAGGGTTCGAAGATTTGCT-ATCT
130 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCA-CA
* * *
14906213 TTGAAC----C
194 TCGAGCGTGGT
* * * * * * *
14906220 TTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGGTGACCGCCTCACTTGTTTCAATTCGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAA-TCGCTT
* * *
14906285 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTAATCAGGAAACTAACCAT
65 CTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCAT
* *
14906350 TTTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAG-TTGGGTTCGAAGATTTGCTCACAT
130 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACAT
14906414 CGAGCGTGGGT
195 CGAGCGT-GGT
*
14906425 TTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCGCTTGTTTCAATCGCTTC
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAATCGCTTC
* *
14906490 TCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAATATCTCATCAAGAAGCTAACCATT
66 TCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATT
*
14906555 TTATTGCTTCGACTTGCTTCTCAGTATCTCATCAGGAAGCTA-GGTTCGAAGATTTGCTCACATC
131 TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACATC
**
14906619 GAGCGTCAAT
196 GAGCGT-GGT
* *
14906629 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTGCTTGTTTCAATCCTCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAAT-CGCTT
* *
14906694 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAGCCAT
65 CTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCAT
* * * * *
14906759 TTTATTGCTTTGACCTGCTTCTCAGTATCTTATTAGGAAGTTAGGGTTCGAAGATTTGCT-ATCT
130 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCA-CA
** *
14906823 TTAAGC----C
194 TCGAGCGTGGT
* * * * * * *
14906830 TTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGGTGACCGCCTCACTTGTTTCAATTCGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAA-TCGCTT
* * * *
14906895 CTCTGTATCTCATCAGGAAGATGAATTTGATCCACTTCTCAGTATCTCATTAGGAAGCTAACCAT
65 CTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCAT
* * * * * * *
14906960 TTT-TTACTTCGCCCTG-TCTCTCAGTATGTCATCAGGAAGCTGGGGTTCAAAGATCTGTTCACA
130 TTTATTGCTTCGACCTGCT-TCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACA
14907023 T
194 T
14907024 TGAGTTGGTA
Statistics
Matches: 1253, Mismatches: 141, Indels: 47
0.87 0.10 0.03
Matches are distributed among these distances:
199 1 0.00
200 68 0.05
201 267 0.21
202 2 0.00
204 382 0.30
205 348 0.28
206 45 0.04
207 140 0.11
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (204 bp):
TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAATCGCTTC
TCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATT
TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACATC
GAGCGTGGT
Found at i:14906578 original size:610 final size:609
Alignment explanation
Indices: 14905403--14907023 Score: 2514
Period size: 610 Copynumber: 2.6 Consensus size: 609
14905393 TCTGGTTTCA
* * * * ** * ** *
14905403 TTGACTTGGCCTTCTTCTCTGTATCTCATCAGGAAGATGACCACATCACATGTTTTGATCCACTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTGCTTGTTTCAATCCTCTT
*** * * * * *
14905468 CTCTATGTTTCATCAGGAAGACGGATTTGGTTCACTTCTCTGTATCTCATCAAGAAGCTAACCAC
66 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAGCCAT
* * * ** *
14905533 TTTATTCCTTAGACCTGCTTCTCAATATCTCATCAAAAAGCTAGGGGTTCGAAGATTTGCTCA-C
131 TTTATTGCTTAGACCTGCTTCTCAGTATCTTATCAGGAAGTTA-GGGTTCGAAGATTTGCT-ATC
* * * * * * * * * * **
14905597 ATCGAGCGTTG-GTTTGATTTGGTCTTCTTCTTAGTATCTCATCATGAAGATGACCGCATCGTTT
194 TTTGAACCTTGAG-TTGGTAT--ACTTC-TC-T-GTATCTCATCAGGAAGGTGACCGCCTCACTT
*
14905661 GTTTCAA-TCTGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTTAT
253 GTTTCAATTC-GCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTAAT
*
14905725 CAGGAAACTAACCATTTTATTGCTTCGACCTGCTTTTCAGTATCTCATCAGGAAGTTGGGTTCGA
317 CAGGAAACTAACCATTTTATTGCTTCGACCT-CTTCTCAGTATCTCATCAGGAAGTTGGGTTCGA
*
14905790 AGATTTGCTCACATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGA
381 AGATTTGCTCACATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGA
*
14905855 CCGCATCGCTTGTTTCAATCGCTTCTTTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCA
446 CCGCATCGCTTGTTTCAATCGCTTCTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCA
*
14905920 GTATCTCATCAAGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGC
511 ATATCTCATCAAGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGC
* *
14905985 TGGGTTCGAAGATTTGCTCACATCGAGCGTCGAT
576 TAGGTTCGAAGATTTGCTCACATCGAGCGTCAAT
*
14906019 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGAAAGATGACCGCATTGCTTGTTTCAATCCTCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTGCTTGTTTCAATCCTCTT
14906084 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAGCCAT
66 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAGCCAT
* *
14906149 TTTATTGCTTCGACCTGGTTCTCAGTATCTTATCAGGAAGTTAGGGTTCGAAGATTTGCTATCTT
131 TTTATTGCTTAGACCTGCTTCTCAGTATCTTATCAGGAAGTTAGGGTTCGAAGATTTGCTATCTT
14906214 TGAACCTTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGGTGACCGCCTCACTTGTTTCAAT
196 TGAACCTTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGGTGACCGCCTCACTTGTTTCAAT
14906279 TCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTAATCAGGAAACT
261 TCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTAATCAGGAAACT
14906344 AACCATTTTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGTTGGGTTCGAAGATTTGCT
326 AACCATTTTATTGCTTCGACCT-CTTCTCAGTATCTCATCAGGAAGTTGGGTTCGAAGATTTGCT
14906409 CACATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCGC
390 CACATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCGC
14906474 TTGTTTCAATCGCTTCTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAATATCTCAT
455 TTGTTTCAATCGCTTCTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAATATCTCAT
*
14906539 CAAGAAGCTAACCATTTTATTGCTTCGACTTGCTTCTCAGTATCTCATCAGGAAGCTAGGTTCGA
520 CAAGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGTTCGA
14906604 AGATTTGCTCACATCGAGCGTCAAT
585 AGATTTGCTCACATCGAGCGTCAAT
14906629 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTGCTTGTTTCAATCCTCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTGCTTGTTTCAATCCTCTT
*
14906694 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAGCCAT
66 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAGCCAT
* *
14906759 TTTATTGCTTTGACCTGCTTCTCAGTATCTTATTAGGAAGTTAGGGTTCGAAGATTTGCTATCTT
131 TTTATTGCTTAGACCTGCTTCTCAGTATCTTATCAGGAAGTTAGGGTTCGAAGATTTGCTATCTT
14906824 T-AAGCCTTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGGTGACCGCCTCACTTGTTTCAA
196 TGAA-CCTTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGGTGACCGCCTCACTTGTTTCAA
* * * * *
14906888 TTCGCTTCTCTGTATCTCATCAGGAAGATGAATTTGATCCACTTCTCAGTATCTCATTAGGAAGC
260 TTCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTAATCAGGAAAC
* * * * * * *
14906953 TAACCATTTT-TTACTTCGCCCTGTCTCTCAGTATGTCATCAGGAAGCTGGGGTTCAAAGATCTG
325 TAACCATTTTATTGCTTCGACCTCT-TCTCAGTATCTCATCAGGAAG-TTGGGTTCGAAGATTTG
*
14907017 TTCACAT
388 CTCACAT
14907024 TGAGTTGGTA
Statistics
Matches: 933, Mismatches: 66, Indels: 18
0.92 0.06 0.02
Matches are distributed among these distances:
608 1 0.00
609 32 0.03
610 713 0.76
611 3 0.00
612 2 0.00
613 4 0.00
614 1 0.00
615 30 0.03
616 147 0.16
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (609 bp):
TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTGCTTGTTTCAATCCTCTT
CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAGCCAT
TTTATTGCTTAGACCTGCTTCTCAGTATCTTATCAGGAAGTTAGGGTTCGAAGATTTGCTATCTT
TGAACCTTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGGTGACCGCCTCACTTGTTTCAAT
TCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTAATCAGGAAACT
AACCATTTTATTGCTTCGACCTCTTCTCAGTATCTCATCAGGAAGTTGGGTTCGAAGATTTGCTC
ACATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCGCT
TGTTTCAATCGCTTCTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAATATCTCATC
AAGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGTTCGAA
GATTTGCTCACATCGAGCGTCAAT
Found at i:14906784 original size:409 final size:406
Alignment explanation
Indices: 14905403--14907023 Score: 2134
Period size: 409 Copynumber: 4.0 Consensus size: 406
14905393 TCTGGTTTCA
* * * * * ** *
14905403 TTGACTTGGCCTTCTTCTCTGTATCTCATCAGGAAGATGACCACATCACATGTTTTGATCCACTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTT
*** * * * *
14905468 CTCTATGTTTCATCAGGAAGACGGATTTGGTTCACTTCTCTGTATCTCATCAAGAAGCTAACCAC
66 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCAT
* * * ** *
14905533 TTTATTCCTTAGACCTGCTTCTCAATATCTCATCAAAAAGCTAGGGGTTCGAAGATTTGCTCACA
131 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAG-T-TGGGTTCGAAGATTTGCTCACA
* * *
14905598 TCGAGCGTTGGTTTGATTTGGTCTTCTTCTTAGTATCTCATCATGAAGATGACCGCATCGTTTGT
194 TCGAGCG-TGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCGCTTGT
* *
14905663 TTCAATCTGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTTATCAG
258 TTCAATC-GCTTCTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAG
* * * *
14905728 GAAACTAACCATTTTATTGCTTCGACCTGCTTTTCAGTATCTCATCAGGAAGTTGGGTTCGAAGA
322 GAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGTTCGAAGA
*
14905793 TTTGCTCACATCGAGCGTGGGT
387 TTTGCTCACATCGAGCGT--CT
*
14905815 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTCAAT-CGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTT
* *
14905879 CTTTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCAT
66 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCAT
*
14905944 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCACATC
131 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGTTCGAAGATTTGCTCACATC
* *
14906009 GAGCGTCGATTTGATTTGGTCTTCTTCTCAGTATCTCATC-AGAAAGATGACCGCATTGCTTGTT
196 GAGCGT-GGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAAG-AAGATGACCGCATCGCTTGTT
* * *
14906073 TCAATCCTCTTCTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGG
259 TCAAT-CGCTTCTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGG
* * * *
14906138 AAGCTAGCCATTTTATTGCTTCGACCTGGTTCTCAGTATCTTATCAGGAAGTTAGGGTTCGAAGA
323 AAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTA-GGTTCGAAGA
* * *
14906203 TTTGCT-ATCTTTGAAC--C-
387 TTTGCTCA-CATCGAGCGTCT
* * * * * * *
14906220 TTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGGTGACCGCCTCACTTGTTTCAATTCGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTT
* * * * *
14906285 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTAATCAGGAAACTAACCAT
66 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCAT
*
14906350 TTTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGTTGGGTTCGAAGATTTGCTCACATC
131 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGTTCGAAGATTTGCTCACATC
14906415 GAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCGCTTGTTT
196 GAGCGT-GGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCGCTTGTTT
* *
14906480 CAATCGCTTCTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAATATCTCATCAAGAA
260 CAATCGCTTCTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAA
*
14906545 GCTAACCATTTTATTGCTTCGACTTGCTTCTCAGTATCTCATCAGGAAGCTAGGTTCGAAGATTT
325 GCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGTTCGAAGATTT
14906610 GCTCACATCGAGCGTCAAT
390 GCTCACATCGAGCGTC--T
** *
14906629 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTGCTTGTTTCAATCCTCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTT
* *
14906694 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAGCCAT
66 CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCAT
* * * *
14906759 TTTATTGCTTTGACCTGCTTCTCAGTATCTTATTAGGAAGTTAGGGTTCGAAGATTTGCT-ATCT
131 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGTT-GGGTTCGAAGATTTGCTCA-CA
** * * * * * * * * *
14906823 TTAAGC----CTTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGGTGACCGCCTCACTTGTT
194 TCGAGCGTGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCGCTTGTT
* * * *
14906884 TCAATTCGCTTCTCTGTATCTCATCAGGAAGATGAATTTGATCCACTTCTCAGTATCTCATTAGG
259 TCAA-TCGCTTCTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGG
* * * * *
14906949 AAGCTAACCATTTT-TTACTTCGCCCTG-TCTCTCAGTATGTCATCAGGAAGCTGGGGTTCAAAG
323 AAGCTAACCATTTTATTGCTTCGACCTGCT-TCTCAGTATCTCATCAGGAAGCT-AGGTTCGAAG
* *
14907012 ATCTGTTCACAT
386 ATTTGCTCACAT
14907024 TGAGTTGGTA
Statistics
Matches: 1071, Mismatches: 120, Indels: 42
0.87 0.10 0.03
Matches are distributed among these distances:
404 22 0.02
405 238 0.22
406 278 0.26
407 2 0.00
408 2 0.00
409 339 0.32
410 44 0.04
411 95 0.09
412 51 0.05
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (406 bp):
TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTT
CTCTATACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCAT
TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGTTCGAAGATTTGCTCACATC
GAGCGTGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCGCTTGTTTC
AATCGCTTCTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAG
CTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGTTCGAAGATTTG
CTCACATCGAGCGTCT
Found at i:14907556 original size:49 final size:49
Alignment explanation
Indices: 14907414--14907567 Score: 164
Period size: 49 Copynumber: 3.1 Consensus size: 49
14907404 CGACTTAAAC
** * * * *
14907414 CTTTCCCTTCAAATCTTCGTCGTACTGGATCTGCTGTCGCAGCTTAGAT
1 CTTTCCCTTCATGTCTTCGTAGTACTGGATCCGCCGTCGCGGCTTAGAT
* * * * * *
14907463 CTTTCTCTTCTTGTCTTCGTAGTACTGGGTCCGTCATCGTGGCTTAGAT
1 CTTTCCCTTCATGTCTTCGTAGTACTGGATCCGCCGTCGCGGCTTAGAT
* **
14907512 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTTAGAT
1 CTTTCCCTTCATGTCTTCGTAGTACTGGATCCGCCGTCGCGGC-TTAGAT
14907562 CTTTCC
1 CTTTCC
14907568 TGTCGTGTCT
Statistics
Matches: 83, Mismatches: 21, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
49 71 0.86
50 12 0.14
ACGTcount: A:0.12, C:0.28, G:0.20, T:0.40
Consensus pattern (49 bp):
CTTTCCCTTCATGTCTTCGTAGTACTGGATCCGCCGTCGCGGCTTAGAT
Found at i:14913568 original size:59 final size:61
Alignment explanation
Indices: 14913474--14913607 Score: 141
Period size: 60 Copynumber: 2.2 Consensus size: 61
14913464 TCTCTATGGC
* * * * * *
14913474 AAAATGGTAA--TTTTGGAAAAATTTTGGGGTTAAAAAT-GACATTTTAGTCATTCGAGGGT
1 AAAATGGTAATTTTTTGGAAAAA-TTCGGGATCAAAAATGGACATTTTAGACATCCGAGAGT
** *
14913533 AAAATGGTAATTTTTTGGAAAAA-TCGGGATCAAAAATGGATTTTTTGGACATCCGAGAGT
1 AAAATGGTAATTTTTTGGAAAAATTCGGGATCAAAAATGGACATTTTAGACATCCGAGAGT
*
14913593 AAAATAGTAATTTTT
1 AAAATGGTAATTTTT
14913608 GAAGTTTTGG
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
59 21 0.34
60 30 0.48
61 11 0.18
ACGTcount: A:0.37, C:0.06, G:0.22, T:0.35
Consensus pattern (61 bp):
AAAATGGTAATTTTTTGGAAAAATTCGGGATCAAAAATGGACATTTTAGACATCCGAGAGT
Found at i:14913627 original size:30 final size:30
Alignment explanation
Indices: 14913593--14913703 Score: 95
Period size: 29 Copynumber: 3.7 Consensus size: 30
14913583 ATCCGAGAGT
14913593 AAAATAGTAATTTTTGAAGTTTT-GGGGTCA
1 AAAAT-GTAATTTTTGAAGTTTTAGGGGTCA
** * * *
14913623 AAAATGGGATTTTTTAGATTTTTGGGGGT-A
1 AAAATGTAATTTTTGA-AGTTTTAGGGGTCA
*
14913653 AAAATGTAATTTTTTTAA-TTTTAGGGG-CA
1 AAAATGTAA-TTTTTGAAGTTTTAGGGGTCA
*
14913682 AAAATGTTAATTTTAGAAGTTT
1 AAAATG-TAATTTTTGAAGTTT
14913704 CGATGCCAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
29 29 0.44
30 25 0.38
31 12 0.18
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (30 bp):
AAAATGTAATTTTTGAAGTTTTAGGGGTCA
Found at i:14913665 original size:29 final size:28
Alignment explanation
Indices: 14913593--14913695 Score: 75
Period size: 30 Copynumber: 3.5 Consensus size: 28
14913583 ATCCGAGAGT
14913593 AAAATAGTAATTTTTGAAGTTTTGGGGTCA
1 AAAATAGTAATTTTTGAA-TTTTGGGGT-A
* * * *
14913623 AAAATGGGATTTTTTAGATTTTTGGGGGTA
1 AAAATAGTAATTTTT-GAATTTT-GGGGTA
* *
14913653 AAAAT-GTAATTTTTTTAATTTTAGGGGCA
1 AAAATAGTAA-TTTTTGAATTTT-GGGGTA
14913682 AAAAT-GTTAATTTT
1 AAAATAG-TAATTTT
14913696 AGAAGTTTCG
Statistics
Matches: 59, Mismatches: 10, Indels: 9
0.76 0.13 0.12
Matches are distributed among these distances:
29 22 0.37
30 30 0.51
31 7 0.12
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (28 bp):
AAAATAGTAATTTTTGAATTTTGGGGTA
Found at i:14915583 original size:6 final size:6
Alignment explanation
Indices: 14915558--14915621 Score: 62
Period size: 6 Copynumber: 11.0 Consensus size: 6
14915548 TGCTCTTTTT
* * *
14915558 TTTAAA TTTGAAA -ATAAA TTTAAA TTTAAA TTCAAA -TTAAA TCTAAA
1 TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
14915605 TTTAAA -ATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA
14915622 AGGGCCCGAT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
5 11 0.24
6 32 0.70
7 3 0.07
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (6 bp):
TTTAAA
Found at i:14915599 original size:11 final size:12
Alignment explanation
Indices: 14915572--14915621 Score: 52
Period size: 11 Copynumber: 4.3 Consensus size: 12
14915562 AATTTGAAAA
*
14915572 TAAATTTAAATT
1 TAAATTCAAATT
14915584 TAAATTCAAA-T
1 TAAATTCAAATT
14915595 TAAA-TCTAAATT
1 TAAATTC-AAATT
*
14915607 TAAAAT-AAATT
1 TAAATTCAAATT
14915618 TAAA
1 TAAA
14915622 AGGGCCCGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
10 2 0.06
11 17 0.50
12 14 0.41
13 1 0.03
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (12 bp):
TAAATTCAAATT
Found at i:14915599 original size:17 final size:16
Alignment explanation
Indices: 14915559--14915621 Score: 63
Period size: 17 Copynumber: 3.7 Consensus size: 16
14915549 GCTCTTTTTT
*
14915559 TTAAATTTGAAAATAAA
1 TTAAATTT-AAATTAAA
14915576 TTTAAATTTAAATTCAAA
1 -TTAAATTTAAATT-AAA
*
14915594 TTAAATCTAAATTTAAA
1 TTAAATTTAAA-TTAAA
*
14915611 ATAAATTTAAA
1 TTAAATTTAAA
14915622 AGGGCCCGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
17 26 0.67
18 13 0.33
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.40
Consensus pattern (16 bp):
TTAAATTTAAATTAAA
Found at i:14915604 original size:23 final size:24
Alignment explanation
Indices: 14915558--14915610 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
14915548 TGCTCTTTTT
* *
14915558 TTTAAATTTGAAAATAAATTTAAA
1 TTTAAATTTCAAAATAAATCTAAA
*
14915582 TTTAAA-TTCAAATTAAATCTAAA
1 TTTAAATTTCAAAATAAATCTAAA
14915605 TTTAAA
1 TTTAAA
14915611 ATAAATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (24 bp):
TTTAAATTTCAAAATAAATCTAAA
Found at i:14934838 original size:30 final size:30
Alignment explanation
Indices: 14934767--14935121 Score: 273
Period size: 30 Copynumber: 12.2 Consensus size: 30
14934757 ATTCGAGGTC
* * *
14934767 AAAAATTGAATTTTTGGACA-TTTGGGGGT
1 AAAAATGGAATTTTTGGAAAGTTTAGGGGT
* *
14934796 -AAAATGGTAATTTTTGGAAAGTTTAAGGTT
1 AAAAATGG-AATTTTTGGAAAGTTTAGGGGT
* **
14934826 AAAAATAGAATTTTT-G-AAGTCGA-GGGT
1 AAAAATGGAATTTTTGGAAAGTTTAGGGGT
* *
14934853 -AAAATGGTAATTTTAGGAAA-TTTTGGGGT
1 AAAAATGG-AATTTTTGGAAAGTTTAGGGGT
* *
14934882 AAAGAATAGAATTTTTGG-ATGTTTAGGGGT
1 AAA-AATGGAATTTTTGGAAAGTTTAGGGGT
*
14934912 -AAAATGGTAATTTTGGGAAAGTTTA-GGGT
1 AAAAATGG-AATTTTTGGAAAGTTTAGGGGT
14934941 CAAAAATGGAATTTTTGG-AAGTTTAGGGGT
1 -AAAAATGGAATTTTTGGAAAGTTTAGGGGT
*
14934971 -AAAATGGTAATTTTGGGAAAGTTT-GGGGTT
1 AAAAATGG-AATTTTTGGAAAGTTTAGGGG-T
14935001 AAAAATGGAATTTTTGGAAA-TTTAGGGGT
1 AAAAATGGAATTTTTGGAAAGTTTAGGGGT
*
14935030 -AAAATGGTAATTTTTGTG-AAG-TT---CGT
1 AAAAATGG-AATTTTTG-GAAAGTTTAGGGGT
* * * * *
14935056 GATAATGAAAATTTTGGAAAGTTTGGGGGT
1 AAAAATGGAATTTTTGGAAAGTTTAGGGGT
* * *
14935086 CAAAATGTAACTTTTGGAAAGTTTAGGGGT
1 AAAAATGGAATTTTTGGAAAGTTTAGGGGT
14935116 CAAAAA
1 -AAAAA
14935122 ATGATTTTTC
Statistics
Matches: 261, Mismatches: 35, Indels: 58
0.74 0.10 0.16
Matches are distributed among these distances:
25 1 0.00
26 18 0.07
27 16 0.06
28 31 0.12
29 68 0.26
30 99 0.38
31 28 0.11
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.35
Consensus pattern (30 bp):
AAAAATGGAATTTTTGGAAAGTTTAGGGGT
Found at i:14935052 original size:59 final size:59
Alignment explanation
Indices: 14934738--14935121 Score: 378
Period size: 59 Copynumber: 6.6 Consensus size: 59
14934728 TGCTCGAGGA
* * * * *
14934738 AAAATGGTAATTTTTAGG-AA-TTCGAGGTCAAAAATTGAATTTTTGGACA-TTTGGGGGT
1 AAAATGGTAATTTTT-GGAAAGTTTGGGGTTAAAAATAGAATTTTTGGA-AGTTTAGGGGT
** **
14934796 AAAATGGTAATTTTTGGAAAGTTTAAGGTTAAAAATAGAATTTTT-GAAGTCGA-GGGT
1 AAAATGGTAATTTTTGGAAAGTTTGGGGTTAAAAATAGAATTTTTGGAAGTTTAGGGGT
* * *
14934853 AAAATGGTAATTTTAGGAAATTTTGGGG-TAAAGAATAGAATTTTTGGATGTTTAGGGGT
1 AAAATGGTAATTTTTGGAAAGTTTGGGGTTAAA-AATAGAATTTTTGGAAGTTTAGGGGT
* * * *
14934912 AAAATGGTAATTTTGGGAAAGTTTAGGGTCAAAAATGGAATTTTTGGAAGTTTAGGGGT
1 AAAATGGTAATTTTTGGAAAGTTTGGGGTTAAAAATAGAATTTTTGGAAGTTTAGGGGT
* * *
14934971 AAAATGGTAATTTTGGGAAAGTTTGGGGTTAAAAATGGAATTTTTGGAAATTTAGGGGT
1 AAAATGGTAATTTTTGGAAAGTTTGGGGTTAAAAATAGAATTTTTGGAAGTTTAGGGGT
* * * ** *
14935030 AAAATGGTAATTTTTGTG-AAG-TTCGTGATAATGA-A-AA-TTTTGGAAAGTTTGGGGGT
1 AAAATGGTAATTTTTG-GAAAGTTTGGGGTTAAAAATAGAATTTTTGG-AAGTTTAGGGGT
* *
14935086 CAAAAT-GTAACTTTTGGAAAGTTTAGGGGTCAAAAA
1 -AAAATGGTAATTTTTGGAAAGTTT-GGGGTTAAAAA
14935122 ATGATTTTTC
Statistics
Matches: 274, Mismatches: 39, Indels: 26
0.81 0.12 0.08
Matches are distributed among these distances:
55 7 0.03
56 28 0.10
57 50 0.18
58 38 0.14
59 147 0.54
60 4 0.01
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.35
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGAAAGTTTGGGGTTAAAAATAGAATTTTTGGAAGTTTAGGGGT
Found at i:14937075 original size:17 final size:16
Alignment explanation
Indices: 14937055--14937086 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
14937045 CTTTTGTTTA
14937055 TTTAAATTTAGAATATT
1 TTTAAATTTA-AATATT
14937072 TTTAAATTTAAATAT
1 TTTAAATTTAAATAT
14937087 AAATTTAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTAAATTTAAATATT
Found at i:14937081 original size:6 final size:6
Alignment explanation
Indices: 14937072--14937110 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
14937062 TTAGAATATT
* *
14937072 TTTAAA TTTAAA TATAAA TTTAAA CTTAAA -TTAAA TTTA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA
14937111 TGTTTTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (6 bp):
TTTAAA
Found at i:14937095 original size:18 final size:18
Alignment explanation
Indices: 14937054--14937148 Score: 81
Period size: 18 Copynumber: 5.4 Consensus size: 18
14937044 ACTTTTGTTT
14937054 ATTTAAATTTAGAATAT--
1 ATTTAAATTTA-AATATAA
*
14937071 TTTTAAATTTAAATATAA
1 ATTTAAATTTAAATATAA
*
14937089 ATTTAAACTTAAAT-TAA
1 ATTTAAATTTAAATATAA
** * *
14937106 ATTTATGTTTTAAA-ACAT
1 ATTTA-AATTTAAATATAA
*
14937124 ATTTAAATTTAAAAATAA
1 ATTTAAATTTAAATATAA
14937142 ATTTAAA
1 ATTTAAA
14937149 ATGGGTTTAG
Statistics
Matches: 61, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
16 5 0.08
17 24 0.39
18 32 0.52
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTTAAATTTAAATATAA
Found at i:14937899 original size:209 final size:208
Alignment explanation
Indices: 14937513--14938168 Score: 875
Period size: 209 Copynumber: 3.1 Consensus size: 208
14937503 TTTCAATCCG
* *
14937513 CTTCTCAGTCTCTCATCAGGAAGATAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
1 CTTCTCAGTATCTCATCAGGAAGGTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
* * *
14937578 AGGAAGCTGGGGTTCGAAGATTCGCTTACTTTGAGGTTGGCTTCATTGATTTGGCCTTCTTCTCA
66 AGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
* * * * * *
14937643 GTATCTCATCAGGAAGATGACAGCATCACTTGTTTCAATCTACTTCTCCGTATCTCATCAGGAAG
131 GTATCTCATCAGGAAGATGACCGCATCGCTTGTTT-GATCCACTTCTCTGTGTCTCATCAGGAAG
* * *
14937708 GCGAATTTGGTCCA
195 ACGAATCTGGTTCA
* * *
14937722 CTTCTCAGTATC-CTATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTTAATATCTCAT
1 CTTCTCAGTATCTC-ATCAGGAAGGTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCAT
* * * * * *
14937786 CAAGAAGTTGGGGTTCGAAGATTTGCTCATTTTGATCTTGGCTTCATTGATTTGACCTTCTTCTT
65 CAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTC
* * *
14937851 AGTATCTTATCAGGAAGATGACCGCTTCGCTTAGTTTGATCCACTTCTCTGTGTCTCATTAGGAA
130 AGTATCTCATCAGGAAGATGACCGCATCGCTT-GTTTGATCCACTTCTCTGTGTCTCATCAGGAA
14937916 GACGAATCTGGTTCA
194 GACGAATCTGGTTCA
* * *** *
14937931 CTTCTCTGTATCTCATCAGGAAGGTATCTGCTTTATTGCTTCGACCTGCTTCTCAATATCTCATT
1 CTTCTCAGTATCTCATCAGGAAGGTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
* * ** * * *
14937996 AGGAAGCTGGGGTCCGAAGATTCT-CTCACTTTGAGCCTGATTTTATTGATTTGGTCTTCTCCTC
66 AGGAAGCTGGGGTTCGAAGATT-TGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTC
*
14938060 AGTATCTCATCAAGAAGATGACCGCATCGCTTGTTTTGATCCACTTCTCTGTGTCTCATCAGGAA
130 AGTATCTCATCAGGAAGATGACCGCATCGCTTG-TTTGATCCACTTCTCTGTGTCTCATCAGGAA
*
14938125 GACAAATCTGGTTCA
194 GACGAATCTGGTTCA
*
14938140 CTTCTCTGTATCTCATCAGGAAGGTAACC
1 CTTCTCAGTATCTCATCAGGAAGGTAACC
14938169 GCTTTATATT
Statistics
Matches: 388, Mismatches: 54, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
208 2 0.01
209 380 0.98
210 6 0.02
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (208 bp):
CTTCTCAGTATCTCATCAGGAAGGTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATC
AGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCTTGGCTTCATTGATTTGGCCTTCTTCTCA
GTATCTCATCAGGAAGATGACCGCATCGCTTGTTTGATCCACTTCTCTGTGTCTCATCAGGAAGA
CGAATCTGGTTCA
Found at i:14946357 original size:23 final size:23
Alignment explanation
Indices: 14946327--14946382 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
14946317 TTAGAATTAT
14946327 TATGCGAAAATATGCAAATATGC
1 TATGCGAAAATATGCAAATATGC
14946350 TATGCGAAAATATGCAAATATGC
1 TATGCGAAAATATGCAAATATGC
* *
14946373 AATGTGAAAA
1 TATGCGAAAA
14946383 AATGGATGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.46, C:0.11, G:0.18, T:0.25
Consensus pattern (23 bp):
TATGCGAAAATATGCAAATATGC
Found at i:14948476 original size:401 final size:401
Alignment explanation
Indices: 14947727--14948529 Score: 1552
Period size: 401 Copynumber: 2.0 Consensus size: 401
14947717 TGTGTGGCAA
14947727 AAAATTCCTTTAAAGGTGAGAAGTCGACTGAGAACACTTTGCATGAAAACCTTTCTACTTTCCAG
1 AAAATTCCTTTAAAGGTGAGAAGTCGACTGAGAACACTTTGCATGAAAACCTTTCTACTTTCCAG
14947792 AAATGACTTTGAAACCAAACCATCAGAAGCTGTGCACAACTAATGAACCTTCCTTCCCCTTCTCT
66 AAATGACTTTGAAACCAAACCATCAGAAGCTGTGCACAACTAATGAACCTTCCTTCCCCTTCTCT
14947857 TCGGTAAGCACTTAATGATCTGAAGATTTCGGCAAGAATCGGTAGAACGAGCGTGACACCTTTAC
131 TCGGTAAGCACTTAATGATCTGAAGATTTCGGCAAGAATCGGTAGAACGAGCGTGACACCTTTAC
*
14947922 TAAGCCGATCAAACAACACTGCTACCACGTCCTCCACATGCCCTAATGCTTTTGGGAAAAGGACT
196 TAAGCCGATCAAAAAACACTGCTACCACGTCCTCCACATGCCCTAATGCTTTTGGGAAAAGGACT
14947987 AACTCGTAAATGCCAAGAGCAAAGATGTCAATGCGCTTCTTCATATCTGGATGTGTTGAAATTAG
261 AACTCGTAAATGCCAAGAGCAAAGATGTCAATGCGCTTCTTCATATCTGGATGTGTTGAAATTAG
*
14948052 ATCTCTCAAACTCTTCTAGTTGATGCACTTATTGTCTCCCTTTATTTTAATCTGAGCTGCAACCT
326 ATCTCTCAAACTCTTCCAGTTGATGCACTTATTGTCTCCCTTTATTTTAATCTGAGCTGCAACCT
*
14948117 ACTGTTTACTC
391 ACTATTTACTC
*
14948128 AAAATTCCTTTAAAGGTGAGAAGTCGACTGAGAACACTTTGCATGAAAACCTTTCTACTTTTCAG
1 AAAATTCCTTTAAAGGTGAGAAGTCGACTGAGAACACTTTGCATGAAAACCTTTCTACTTTCCAG
14948193 AAATGACTTTGAAACCAAACCATCAGAAGCTGTGCACAACTAATGAACCTTCCTTCCCCTTCTCT
66 AAATGACTTTGAAACCAAACCATCAGAAGCTGTGCACAACTAATGAACCTTCCTTCCCCTTCTCT
14948258 TCGGTAAGCACTTAATGATCTGAAGATTTCGGCAAGAATCGGTAGAACGAGCGTGACACCTTTAC
131 TCGGTAAGCACTTAATGATCTGAAGATTTCGGCAAGAATCGGTAGAACGAGCGTGACACCTTTAC
*
14948323 TAAGCCGATCAAAAAACACTGCTACCACGTCCTTCACATGCCCTAATGCTTTTGGGAAAAGGACT
196 TAAGCCGATCAAAAAACACTGCTACCACGTCCTCCACATGCCCTAATGCTTTTGGGAAAAGGACT
*
14948388 AACTCGTAAATGCCAAGAGCAAAGATGTTAATGCGCTTCTTCATATCTGGATGTGTTGAAATTAG
261 AACTCGTAAATGCCAAGAGCAAAGATGTCAATGCGCTTCTTCATATCTGGATGTGTTGAAATTAG
14948453 ATCTCTCAAACTCTTCCAGTTGATGCACTTATTGTCTCCCTTTATTTTAATCTGAGCTGCAACCT
326 ATCTCTCAAACTCTTCCAGTTGATGCACTTATTGTCTCCCTTTATTTTAATCTGAGCTGCAACCT
14948518 ACTATTTACTC
391 ACTATTTACTC
14948529 A
1 A
14948530 TCCCGGTTAC
Statistics
Matches: 396, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
401 396 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (401 bp):
AAAATTCCTTTAAAGGTGAGAAGTCGACTGAGAACACTTTGCATGAAAACCTTTCTACTTTCCAG
AAATGACTTTGAAACCAAACCATCAGAAGCTGTGCACAACTAATGAACCTTCCTTCCCCTTCTCT
TCGGTAAGCACTTAATGATCTGAAGATTTCGGCAAGAATCGGTAGAACGAGCGTGACACCTTTAC
TAAGCCGATCAAAAAACACTGCTACCACGTCCTCCACATGCCCTAATGCTTTTGGGAAAAGGACT
AACTCGTAAATGCCAAGAGCAAAGATGTCAATGCGCTTCTTCATATCTGGATGTGTTGAAATTAG
ATCTCTCAAACTCTTCCAGTTGATGCACTTATTGTCTCCCTTTATTTTAATCTGAGCTGCAACCT
ACTATTTACTC
Found at i:14950817 original size:59 final size:59
Alignment explanation
Indices: 14950728--14951163 Score: 372
Period size: 59 Copynumber: 7.4 Consensus size: 59
14950718 TGCCAGAGGC
* * *
14950728 AAAATGGTAATTTTTAGG-AAGTTCGAGGTCAAAAATGGAATTTTTGGGTATTCAGGGGT
1 AAAATGGTAA-TTTTGGGAAAGTTCGGGGTCAAAAATGGAATTTTTGGATATTCAGGGGT
* * ** ** * *
14950787 AAAATGGTAAATGTAAGAAAGTAT-GGGGTCAAAAATAAAATTTTTGGATGTT-TGAGGGT
1 AAAATGGTAATTTTGGGAAAGT-TCGGGGTCAAAAATGGAATTTTTGGATATTCAG-GGGT
* *
14950846 AAAATGGTAATTTTGGGAAAGTTCAGGGTCAAAAATGGAATTTTTGGA-AGTT-TGAGGGT
1 AAAATGGTAATTTTGGGAAAGTTCGGGGTCAAAAATGGAATTTTTGGATA-TTCAG-GGGT
* * * * *
14950905 AAAATGGTAATATTTGGG-AAGTTTGGAGTCAAAAATGGAATTTTTAGACATTCGGGGGT
1 AAAATGGTAAT-TTTGGGAAAGTTCGGGGTCAAAAATGGAATTTTTGGATATTCAGGGGT
* * * * *
14950964 AAAATTGTAATTTTTGGG-AAGTTCAGGGTGAAAAATGGAATTTTTGGACATTTAGGGGT
1 AAAATGGTAA-TTTTGGGAAAGTTCGGGGTCAAAAATGGAATTTTTGGATATTCAGGGGT
* * * * *
14951023 AGAATGGTAATTTTGGGAAAGTTCGAGGTAAAAAATGGAATTTTTGGAAATTC-GAGGT
1 AAAATGGTAATTTTGGGAAAGTTCGGGGTCAAAAATGGAATTTTTGGATATTCAGGGGT
* * * * * * *
14951081 AAAATGGTAATTTTTGTG-AAGTTCGAGTGT-AATAATGTAAATTTTGGAAAGTTCATGGGT
1 AAAATGGTAA-TTTTGGGAAAGTTCG-GGGTCAAAAATGGAATTTTTGGATA-TTCAGGGGT
*
14951141 CAAAAT-GTAATTTTTGGAAAGTT
1 -AAAATGGTAATTTTGGGAAAGTT
14951164 TAAGGGTTAA
Statistics
Matches: 312, Mismatches: 49, Indels: 31
0.80 0.12 0.08
Matches are distributed among these distances:
58 50 0.16
59 235 0.75
60 22 0.07
61 5 0.02
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.34
Consensus pattern (59 bp):
AAAATGGTAATTTTGGGAAAGTTCGGGGTCAAAAATGGAATTTTTGGATATTCAGGGGT
Found at i:14950936 original size:118 final size:118
Alignment explanation
Indices: 14950728--14951164 Score: 430
Period size: 118 Copynumber: 3.7 Consensus size: 118
14950718 TGCCAGAGGC
*
14950728 AAAATGGTAATTTTTAGGAAGTTC-GAGGTCAAAAATGGAATTTTTGG--GTATTCAGGGGTAAA
1 AAAATGGTAATTTTTGGGAAGTTCAG-GGTCAAAAATGGAATTTTTGGAAGT-TT-AGGGGTAAA
** * * * ** ** *
14950790 ATGGTAA-ATGTAAGAAAGTATGGGGTCAAAAATAAAATTTTTGGATGTTTGAGGGT
63 ATGGTAATAT-TTGGGAAGTTTGGAGTCAAAAATGGAATTTTTGGAAATTCGAGGGT
14950846 AAAATGGTAA-TTTTGGGAAAGTTCAGGGTCAAAAATGGAATTTTTGGAAGTTT-GAGGGTAAAA
1 AAAATGGTAATTTTTGGG-AAGTTCAGGGTCAAAAATGGAATTTTTGGAAGTTTAG-GGGTAAAA
* * *
14950909 TGGTAATATTTGGGAAGTTTGGAGTCAAAAATGGAATTTTTAGACATTCGGGGGT
64 TGGTAATATTTGGGAAGTTTGGAGTCAAAAATGGAATTTTTGGAAATTCGAGGGT
* * *
14950964 AAAATTGTAATTTTTGGGAAGTTCAGGGTGAAAAATGGAATTTTTGGACA-TTTAGGGGTAGAAT
1 AAAATGGTAATTTTTGGGAAGTTCAGGGTCAAAAATGGAATTTTTGGA-AGTTTAGGGGTAAAAT
* *
14951028 GGTAAT-TTTGGGAAAG-TTCGAGGTAAAAAATGGAATTTTTGGAAATTCGA-GGT
65 GGTAATATTTGGG-AAGTTTGGA-GTCAAAAATGGAATTTTTGGAAATTCGAGGGT
* * * * * * *
14951081 AAAATGGTAATTTTTGTGAAGTTCGAGTGT-AATAATGTAAATTTTGGAAAGTTCATGGGTCAAA
1 AAAATGGTAATTTTTGGGAAGTTC-AGGGTCAAAAATGGAATTTTTGG-AAGTTTAGGGGT-AAA
* *
14951145 AT-GTAATTTTTGGAAAGTTT
63 ATGGTAATATTTGGGAAGTTT
14951165 AAGGGTTAAA
Statistics
Matches: 271, Mismatches: 31, Indels: 33
0.81 0.09 0.10
Matches are distributed among these distances:
117 57 0.21
118 187 0.69
119 25 0.09
120 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.34
Consensus pattern (118 bp):
AAAATGGTAATTTTTGGGAAGTTCAGGGTCAAAAATGGAATTTTTGGAAGTTTAGGGGTAAAATG
GTAATATTTGGGAAGTTTGGAGTCAAAAATGGAATTTTTGGAAATTCGAGGGT
Found at i:14951031 original size:177 final size:177
Alignment explanation
Indices: 14950723--14951107 Score: 467
Period size: 177 Copynumber: 2.2 Consensus size: 177
14950713 TTCGATGCCA
* * * **
14950723 GAGGCAAAATGGTAATTTTTAGGAAG-TTCGAGGTCAAAAATGGAATTTTTGGGTATTCAGGGGT
1 GAGGTAAAATGGTAATTTTTGGGAAGTTTCGAGGTCAAAAATGGAATTTTTAGACATTCAGGGGT
* **
14950787 AAAATGGTAAATGTAAGAAAGTATGGGGTCAAAAATAAAATTTTTGGATGTTTGAGGGTAAAATG
66 AAAATGGTAAATGTAAGAAAGTATAGGGTCAAAAATAAAATTTTTGGACATTTGAGGGTAAAATG
* * *
14950852 GTAATTTTGGGAAAGTTC-AGGGTCAAAAATGGAATTTTTGGAAGTTT
131 GTAATTTTGGGAAAGTTCGA-GGTAAAAAATGGAATTTTTGGAAATTC
* * *
14950899 GAGGGTAAAATGGTAATATTTGGGAAGTTTGGA-GTCAAAAATGGAATTTTTAGACATTCGGGGG
1 GA-GGTAAAATGGTAATTTTTGGGAAGTTTCGAGGTCAAAAATGGAATTTTTAGACATTCAGGGG
* * * ** * * ** *
14950963 TAAAATTGTAATTTTTGGGAAGT-TCAGGGTGAAAAATGGAATTTTTGGACATTT-AGGGGTAGA
65 TAAAATGGTAAATGTAAGAAAGTAT-AGGGTCAAAAATAAAATTTTTGGACATTTGA-GGGTAAA
14951026 ATGGTAATTTTGGGAAAGTTCGAGGTAAAAAATGGAATTTTTGGAAATTC
128 ATGGTAATTTTGGGAAAGTTCGAGGTAAAAAATGGAATTTTTGGAAATTC
*
14951076 GAGGTAAAATGGTAATTTTTGTGAAG-TTCGAG
1 GAGGTAAAATGGTAATTTTTGGGAAGTTTCGAG
14951108 TGTAATAATG
Statistics
Matches: 176, Mismatches: 27, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
175 4 0.02
176 26 0.15
177 141 0.80
178 5 0.03
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (177 bp):
GAGGTAAAATGGTAATTTTTGGGAAGTTTCGAGGTCAAAAATGGAATTTTTAGACATTCAGGGGT
AAAATGGTAAATGTAAGAAAGTATAGGGTCAAAAATAAAATTTTTGGACATTTGAGGGTAAAATG
GTAATTTTGGGAAAGTTCGAGGTAAAAAATGGAATTTTTGGAAATTC
Found at i:14951133 original size:30 final size:29
Alignment explanation
Indices: 14950728--14951163 Score: 204
Period size: 30 Copynumber: 14.8 Consensus size: 29
14950718 TGCCAGAGGC
14950728 AAAATGGTAATTTTTAGG-AAGTTCGAGGTCA
1 AAAAT-GTAATTTTT-GGAAAGTTCGAGGT-A
* ** *
14950759 AAAATGGAATTTTTGGGTA-TTCAGGGGT-
1 AAAATGTAATTTTTGGAAAGTTC-GAGGTA
* * ** *
14950787 AAAATGGTAAATGTAAGAAAGTAT-GGGGTCA
1 AAAAT-GTAATTTTTGGAAAGT-TCGAGGT-A
** * *
14950818 AAAATAAAATTTTTGG-ATGTTTGAGGGT-
1 AAAATGTAATTTTTGGAAAGTTCGA-GGTA
*
14950846 AAAATGGTAATTTTGGGAAAGTTC-AGGGTCA
1 AAAAT-GTAATTTTTGGAAAGTTCGA-GGT-A
* *
14950877 AAAATGGAATTTTTGG-AAGTTTGAGGGT-
1 AAAATGTAATTTTTGGAAAGTTCGA-GGTA
* * *
14950905 AAAATGGTAATATTTGGGAAGTTTG-GAGTCA
1 AAAAT-GTAATTTTTGGAAAGTTCGAG-GT-A
* * * *
14950936 AAAATGGAATTTTTAGACA-TTCGGGGGTA
1 AAAATGTAATTTTTGGAAAGTTC-GAGGTA
* *
14950965 AAATTGTAATTTTTGGGAAGTTC-AGGGTGA
1 AAAATGTAATTTTTGGAAAGTTCGA-GGT-A
* * * * *
14950995 AAAATGGAATTTTTGGACATTTAGGGGT-
1 AAAATGTAATTTTTGGAAAGTTCGAGGTA
* *
14951023 AGAATGGTAATTTTGGGAAAGTTCGAGGTAA
1 AAAAT-GTAATTTTTGGAAAGTTCGAGGT-A
*
14951054 AAAATGGAATTTTTGGAAA-TTCGAGGT-
1 AAAATGTAATTTTTGGAAAGTTCGAGGTA
14951081 AAAATGGTAATTTTTGTG-AAGTTCGAGTGTA
1 AAAAT-GTAATTTTTG-GAAAGTTCGAG-GTA
* * *
14951112 ATAATGTAAATTTTGGAAAGTTC-ATGGGTC
1 AAAATGTAATTTTTGGAAAGTTCGA--GGTA
14951142 AAAATGTAATTTTTGGAAAGTT
1 AAAATGTAATTTTTGGAAAGTT
14951164 TAAGGGTTAA
Statistics
Matches: 306, Mismatches: 63, Indels: 73
0.69 0.14 0.17
Matches are distributed among these distances:
27 5 0.02
28 32 0.10
29 104 0.34
30 134 0.44
31 31 0.10
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.34
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAAGTTCGAGGTA
Found at i:14951826 original size:3 final size:3
Alignment explanation
Indices: 14951818--14951886 Score: 84
Period size: 3 Copynumber: 22.7 Consensus size: 3
14951808 TTCGACTGCC
* * ** *
14951818 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA CTA TTA AGA TTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14951866 TTA TTA TTA TTGA TTA TTA TT
1 TTA TTA TTA TT-A TTA TTA TT
14951887 GATACTATTT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
3 54 0.95
4 3 0.05
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:14952095 original size:18 final size:17
Alignment explanation
Indices: 14952056--14952097 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
14952046 GACTTTATTT
*
14952056 ATTTAAATTTAGAATAA
1 ATTTAAATTTAAAATAA
*
14952073 TTTTAAATTTAAATATAA
1 ATTTAAATTTAAA-ATAA
14952091 ATTTAAA
1 ATTTAAA
14952098 ATAAATTGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:14952103 original size:11 final size:12
Alignment explanation
Indices: 14952076--14952104 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14952066 AGAATAATTT
14952076 TAAATTTAAATA
1 TAAATTTAAATA
14952088 TAAATTTAAA-A
1 TAAATTTAAATA
14952099 TAAATT
1 TAAATT
14952105 GAATCCTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAATTTAAATA
Found at i:14983397 original size:6 final size:6
Alignment explanation
Indices: 14983379--14983420 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
14983369 TTTTAGTATA
*
14983379 TTTATT TTCATT TTTATT TTTATT TTTA-T TTTA-T TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
14983421 AATTATGCAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 10 0.30
6 23 0.70
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:14983404 original size:5 final size:5
Alignment explanation
Indices: 14983379--14983421 Score: 50
Period size: 5 Copynumber: 7.8 Consensus size: 5
14983369 TTTTAGTATA
14983379 TTTAT TTTCATT TTTATT TTTATT TTTAT TTTAT TTTAT TTTA
1 TTTAT TTT-A-T TTTA-T TTTA-T TTTAT TTTAT TTTAT TTTA
14983422 ATTATGCACT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
5 18 0.50
6 14 0.39
7 4 0.11
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:14994502 original size:23 final size:23
Alignment explanation
Indices: 14994463--14994507 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14994453 AATATGCAAA
*
14994463 TATGCAATGCGAAAAAATGCATG
1 TATGCAATGCGAAAAAAGGCATG
*
14994486 TATGTAATGC-AAGAAAAGGCAT
1 TATGCAATGCGAA-AAAAGGCAT
14994508 TGATTTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (23 bp):
TATGCAATGCGAAAAAAGGCATG
Found at i:14998394 original size:30 final size:29
Alignment explanation
Indices: 14998344--14998834 Score: 243
Period size: 29 Copynumber: 16.7 Consensus size: 29
14998334 TTTCGATGCC
14998344 AGGGTCAAAATGGTAATTTTTAGGAAGTTTG
1 AGGGT-AAAATGGTAATTTTT-GGAAGTTTG
* *
14998375 AGGTTAAAAATGG-AATTTTTGGACA-TTCG
1 AGGGT-AAAATGGTAATTTTTGGA-AGTTTG
*
14998404 AGGGTAAAATGGTAATTTTGGGAAAGTTT-
1 AGGGTAAAATGGTAATTTTTGG-AAGTTTG
* *
14998433 AGGGTTAAAAATGG-AATTTTTGGTAGTTTA
1 AGGG-T-AAAATGGTAATTTTTGGAAGTTTG
*
14998463 AGGGTAAAATGGTAATTTTTGGAAAGTATG
1 AGGGTAAAATGGTAATTTTTGG-AAGTTTG
** * *
14998493 -GGGTAAAA-AATAAACTTTTTGGATGTTCG
1 AGGGTAAAATGGT-AA-TTTTTGGAAGTTTG
*
14998522 -GGAGTAAAATGGTAATTTTGGGAAAGTTTG
1 AGG-GTAAAATGGTAATTTTTGG-AAGTTTG
* * **
14998552 A-GGTCAAAATAAG-AATTTTTCGAAGACTG
1 AGGGT-AAAAT-GGTAATTTTTGGAAGTTTG
* * *
14998581 AGGGTAAAATTGTAA-TTTGGGAAAGTTCG
1 AGGGTAAAATGGTAATTTTTGG-AAGTTTG
* * *
14998610 A-GGTCAAAAATAG-AATTTTTGAAAGTCTG
1 AGGGT--AAAATGGTAATTTTTGGAAGTTTG
* * * *
14998639 GGGGTAAAATGGTATTTTTTGGGA-TGTTC
1 AGGGTAAAATGGTAATTTTTGGAAGT-TTG
*
14998668 AGGGTGAAAAATGG-AATTTTTGGACA-TTCG
1 AGGGT--AAAATGGTAATTTTTGGA-AGTTTG
* *
14998698 -TGGTAAAATGGTAATTTTAGGAAAGTTTG
1 AGGGTAAAATGGTAATTTTTGG-AAGTTTG
* *
14998727 -GGGTCAAAAATGG-AATTTTTGGAA-ATTC
1 AGGGT--AAAATGGTAATTTTTGGAAGTTTG
* * *
14998755 AAGGTAAAATGGTAA-TTTTGTGAAGCTCG
1 AGGGTAAAATGGTAATTTTTG-GAAGTTTG
* * **
14998784 AGGGCAATAAT-GTAAATTTTGGAAAGTTCA
1 AGGGTAA-AATGGTAATTTTTGG-AAGTTTG
14998814 AGGGTCAAAAT-GTAATTTTTG
1 AGGGT-AAAATGGTAATTTTTG
14998835 AAAAGTTGAG
Statistics
Matches: 352, Mismatches: 66, Indels: 85
0.70 0.13 0.17
Matches are distributed among these distances:
27 19 0.05
28 46 0.13
29 126 0.36
30 123 0.35
31 38 0.11
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (29 bp):
AGGGTAAAATGGTAATTTTTGGAAGTTTG
Found at i:14998420 original size:59 final size:58
Alignment explanation
Indices: 14998344--14998774 Score: 378
Period size: 59 Copynumber: 7.3 Consensus size: 58
14998334 TTTCGATGCC
*
14998344 AGGGTCAAAATGGTAATTTTTAGG-AAGTTTGAGGTTAAAAATGGAATTTTTGGACATTCG
1 AGGGT-AAAATGGTAA-TTTTGGGAAAGTTTGAGGTTAAAAATGGAATTTTTGGA-ATTCG
* **
14998404 AGGGTAAAATGGTAATTTTGGGAAAGTTT-AGGGTTAAAAATGGAATTTTTGGTAGTTTA
1 AGGGTAAAATGGTAATTTTGGGAAAGTTTGA-GGTTAAAAATGGAATTTTTGG-AATTCG
* * * * * *
14998463 AGGGTAAAATGGTAATTTTTGGAAAGTATGGGGTAAAAAAT-AAACTTTTTGGATGTTCG
1 AGGGTAAAATGGTAATTTTGGGAAAGTTTGAGGTTAAAAATGGAA-TTTTTGGA-ATTCG
* * * **
14998522 -GGAGTAAAATGGTAATTTTGGGAAAGTTTGAGG-TCAAAATAAGAATTTTTCGAAGACTG
1 AGG-GTAAAATGGTAATTTTGGGAAAGTTTGAGGTTAAAAAT-GGAATTTTTGGAATTC-G
* * * * * *
14998581 AGGGTAAAATTGTAA-TTTGGGAAAGTTCGAGGTCAAAAATAGAATTTTTGAAAGTCTG
1 AGGGTAAAATGGTAATTTTGGGAAAGTTTGAGGTTAAAAATGGAATTTTTGGAATTC-G
* * * * *
14998639 GGGGTAAAATGGTATTTTTTGGG-ATG-TTCAGGGTGAAAAATGGAATTTTTGGACATTCG
1 AGGGTAAAATGGTA-ATTTTGGGAAAGTTTGA-GGTTAAAAATGGAATTTTTGGA-ATTCG
* * * *
14998698 -TGGTAAAATGGTAATTTTAGGAAAGTTTGGGGTCAAAAATGGAATTTTTGGAAATTC-
1 AGGGTAAAATGGTAATTTTGGGAAAGTTTGAGGTTAAAAATGGAATTTTTGG-AATTCG
*
14998755 AAGGTAAAATGGTAATTTTG
1 AGGGTAAAATGGTAATTTTG
14998775 TGAAGCTCGA
Statistics
Matches: 304, Mismatches: 47, Indels: 42
0.77 0.12 0.11
Matches are distributed among these distances:
57 6 0.02
58 118 0.39
59 161 0.53
60 19 0.06
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.34
Consensus pattern (58 bp):
AGGGTAAAATGGTAATTTTGGGAAAGTTTGAGGTTAAAAATGGAATTTTTGGAATTCG
Found at i:14998802 original size:58 final size:57
Alignment explanation
Indices: 14998380--14998836 Score: 191
Period size: 59 Copynumber: 7.8 Consensus size: 57
14998370 GTTTGAGGTT
* * * * * ** *
14998380 AAAAATGGAATTTTTGGACATTCGAGGGTAAAATGGTAATTTTGGGAAAGTTTAGGGTT
1 AAAAATGAAATTTTTGGAAATTC-AAGGTAAAATGGTAATTTTGTG-AAGCTCGGGGTC
* * * * * *
14998439 AAAAATGGAATTTTTGGTAGTTTAAGGGTAAAATGGTAATTTT-TGGAAAG-TATGGGGTA
1 AAAAATGAAATTTTTGGAAATTCAA-GGTAAAATGGTAATTTTGT-G-AAGCT-CGGGGTC
** ** * * * *
14998498 AAAAAT-AAACTTTTTGGATGTTCGGGAGTAAAATGGTAATTTTGGGAAAGTTTGAGGTC
1 AAAAATGAAA-TTTTTGGAAATTCAAG-GTAAAATGGTAATTTTGTG-AAGCTCGGGGTC
* * * * * * * * *
14998557 -AAAATAAGAATTTTTCGAAGACTGAGGGTAAAATTGTAA-TTTGGGAAAGTTCGAGGTC
1 AAAAATGA-AATTTTTGGAA-ATTCAAGGTAAAATGGTAATTTTGTG-AAGCTCGGGGTC
*** * * * * * *
14998615 AAAAAT-AGAATTTTT-GAAAGTCTGGGGGTAAAATGGTATTTTTTGGGATGTTCAGGGTG
1 AAAAATGA-AATTTTTGGAAA-T-TCAAGGTAAAATGGTA-ATTTTGTGAAGCTCGGGGTC
* * ** * *
14998674 AAAAATGGAATTTTTGGACATTCGTGGTAAAATGGTAATTTTAG-GAAAGTTTGGGGTC
1 AAAAATGAAATTTTTGGAAATTCAAGGTAAAATGGTAATTTT-GTG-AAGCTCGGGGTC
*
14998732 AAAAATGGAATTTTTGGAAATTCAAGGTAAAATGGTAATTTTGTGAAGCTCGAGGG-C
1 AAAAATGAAATTTTTGGAAATTCAAGGTAAAATGGTAATTTTGTGAAGCTCG-GGGTC
*
14998789 AATAATGTAAA-TTTTGGAAAGTTCAAGGGTCAAAAT-GTAATTTT-TGAA
1 AAAAATG-AAATTTTTGGAAA-TTCAA-GGT-AAAATGGTAATTTTGTGAA
14998837 AAGTTGAGGG
Statistics
Matches: 324, Mismatches: 49, Indels: 51
0.76 0.12 0.12
Matches are distributed among these distances:
56 1 0.00
57 30 0.09
58 128 0.40
59 145 0.45
60 20 0.06
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.33
Consensus pattern (57 bp):
AAAAATGAAATTTTTGGAAATTCAAGGTAAAATGGTAATTTTGTGAAGCTCGGGGTC
Found at i:14998840 original size:30 final size:30
Alignment explanation
Indices: 14998727--14998876 Score: 116
Period size: 30 Copynumber: 5.1 Consensus size: 30
14998717 GGAAAGTTTG
* *
14998727 GGGTCAAAAATGGAATTTTTGGAAA-TTCAA
1 GGGTC-AAAATGTAATTTTTGAAAAGTTCAA
* *
14998757 -GGT-AAAATGGTAATTTTGTG--AAGCTCGA
1 GGGTCAAAAT-GTAATTTT-TGAAAAGTTCAA
* *
14998785 GGG-CAATAATGTAAATTTTGGAAAGTTCAA
1 GGGTCAA-AATGTAATTTTTGAAAAGTTCAA
* *
14998815 GGGTCAAAATGTAATTTTTGAAAAGTTGAG
1 GGGTCAAAATGTAATTTTTGAAAAGTTCAA
* *
14998845 GGGTCAAAATATGATTTTT-AAACAGTTCAA
1 GGGTCAAAATGTAATTTTTGAAA-AGTTCAA
14998875 GG
1 GG
14998877 ACCTTTTAGG
Statistics
Matches: 96, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
27 7 0.07
28 12 0.12
29 19 0.20
30 55 0.57
31 3 0.03
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (30 bp):
GGGTCAAAATGTAATTTTTGAAAAGTTCAA
Found at i:14998846 original size:29 final size:29
Alignment explanation
Indices: 14998344--14998846 Score: 257
Period size: 30 Copynumber: 17.1 Consensus size: 29
14998334 TTTCGATGCC
14998344 AGGGTCAAAATGGTAATTTTTAGG-AAGTTTG
1 AGGGT-AAAATGGTAATTTTT-GGAAAG-TTG
* *
14998375 AGGTTAAAAATGG-AATTTTTGGACA-TTCG
1 AGGGT-AAAATGGTAATTTTTGGAAAGTT-G
* *
14998404 AGGGTAAAATGGTAATTTTGGGAAAGTTT
1 AGGGTAAAATGGTAATTTTTGGAAAGTTG
* *
14998433 AGGGTTAAAAATGG-AATTTTTGG-TAGTTTA
1 AGGG-T-AAAATGGTAATTTTTGGAAAG-TTG
14998463 AGGGTAAAATGGTAATTTTTGGAAAGTATG
1 AGGGTAAAATGGTAATTTTTGGAAAGT-TG
** *
14998493 -GGGTAAAA-AATAAACTTTTTGG-ATGTTCG
1 AGGGTAAAATGGT-AA-TTTTTGGAAAGTT-G
*
14998522 -GGAGTAAAATGGTAATTTTGGGAAAGTTTG
1 AGG-GTAAAATGGTAATTTTTGGAAAG-TTG
* * *
14998552 A-GGTCAAAATAAG-AATTTTTCG-AAGACTG
1 AGGGT-AAAAT-GGTAATTTTTGGAAAG-TTG
* *
14998581 AGGGTAAAATTGTAA-TTTGGGAAAGTTCG
1 AGGGTAAAATGGTAATTTTTGGAAAGTT-G
*
14998610 A-GGTCAAAAATAG-AATTTTT-GAAAGTCTG
1 AGGGT--AAAATGGTAATTTTTGGAAAGT-TG
* * * * *
14998639 GGGGTAAAATGGTATTTTTTGGGATGTTC
1 AGGGTAAAATGGTAATTTTTGGAAAGTTG
*
14998668 AGGGTGAAAAATGG-AATTTTTGGACA-TTCG
1 AGGGT--AAAATGGTAATTTTTGGAAAGTT-G
* *
14998698 -TGGTAAAATGGTAATTTTAGGAAAGTTTG
1 AGGGTAAAATGGTAATTTTTGGAAAG-TTG
*
14998727 -GGGTCAAAAATGG-AATTTTTGGAAA-TTC
1 AGGGT--AAAATGGTAATTTTTGGAAAGTTG
* *
14998755 AAGGTAAAATGGTAA-TTTTGTG-AAGCTCG
1 AGGGTAAAATGGTAATTTTTG-GAAAG-TTG
* * *
14998784 AGGGCAATAAT-GTAAATTTTGGAAAGTTCA
1 AGGGTAA-AATGGTAATTTTTGGAAAGTT-G
*
14998814 AGGGTCAAAAT-GTAATTTTTGAAAAGTTG
1 AGGGT-AAAATGGTAATTTTTGGAAAGTTG
14998843 AGGG
1 AGGG
14998847 GTCAAAATAT
Statistics
Matches: 364, Mismatches: 59, Indels: 100
0.70 0.11 0.19
Matches are distributed among these distances:
27 21 0.06
28 48 0.13
29 124 0.34
30 133 0.37
31 38 0.10
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.33
Consensus pattern (29 bp):
AGGGTAAAATGGTAATTTTTGGAAAGTTG
Found at i:15000234 original size:6 final size:6
Alignment explanation
Indices: 15000207--15000276 Score: 51
Period size: 6 Copynumber: 12.2 Consensus size: 6
15000197 GACTTTGTTT
* * *
15000207 ATTTAA ATTTAGA A--TAA TTTTAA ATTTAA ATATAA ATTTAA A-ATAA
1 ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
*
15000253 ATTT-A ATCTTAA A-ATAA ATTTAA A
1 ATTTAA AT-TTAA ATTTAA ATTTAA A
15000277 ATGGATTTAG
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
4 1 0.02
5 13 0.27
6 31 0.63
7 4 0.08
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (6 bp):
ATTTAA
Found at i:15000244 original size:29 final size:28
Alignment explanation
Indices: 15000210--15000278 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 28
15000200 TTTGTTTATT
* *
15000210 TAAATTTAGAATAATTTTAAAT-TTAAATA
1 TAAATTTAAAATAAATTT-AATCTTAAA-A
15000239 TAAATTTAAAATAAATTTAATCTTAAAA
1 TAAATTTAAAATAAATTTAATCTTAAAA
15000267 TAAATTTAAAAT
1 TAAATTTAAAAT
15000279 GGATTTAGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 16 0.43
29 21 0.57
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (28 bp):
TAAATTTAAAATAAATTTAATCTTAAAA
Found at i:15000246 original size:18 final size:17
Alignment explanation
Indices: 15000207--15000276 Score: 71
Period size: 17 Copynumber: 4.4 Consensus size: 17
15000197 GACTTTGTTT
*
15000207 ATTTAAATTTAGAATAA
1 ATTTAAATTTAAAATAA
*
15000224 TTTTAAATTT-AAAT--
1 ATTTAAATTTAAAATAA
15000238 A--TAAATTTAAAATAA
1 ATTTAAATTTAAAATAA
15000253 ATTT-AATCTTAAAATAA
1 ATTTAAAT-TTAAAATAA
15000270 ATTTAAA
1 ATTTAAA
15000277 ATGGATTTAG
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
12 7 0.16
13 4 0.09
15 1 0.02
16 6 0.14
17 23 0.53
18 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:15000278 original size:11 final size:12
Alignment explanation
Indices: 15000227--15000258 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
15000217 AGAATAATTT
15000227 TAAATTTAAATA
1 TAAATTTAAATA
15000239 TAAATTTAAA-A
1 TAAATTTAAATA
15000250 TAAATTTAA
1 TAAATTTAA
15000259 TCTTAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAATTTAAATA
Found at i:15009107 original size:6 final size:6
Alignment explanation
Indices: 15009087--15009156 Score: 65
Period size: 6 Copynumber: 12.0 Consensus size: 6
15009077 ATCGGGCCCT
* * * *
15009087 TTTAAA TTT-AT TTTAAA TTTAGA TTT-AT TTTAAA TTTGAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
15009133 TTTAAA TTT-AT TTTCAAA TTTAAA
1 TTTAAA TTTAAA TTT-AAA TTTAAA
15009157 AAAAAAGCAA
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
5 11 0.22
6 35 0.70
7 4 0.08
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:15009112 original size:17 final size:17
Alignment explanation
Indices: 15009087--15009156 Score: 78
Period size: 17 Copynumber: 4.4 Consensus size: 17
15009077 ATCGGGCCCT
15009087 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
15009104 TTTAGATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
15009121 TTT-GA---A-TTTAAA
1 TTTAAATTTATTTTAAA
15009133 TTTAAATTTATTTTCAAA
1 TTTAAATTTATTTT-AAA
15009151 TTTAAA
1 TTTAAA
15009157 AAAAAAGCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
12 9 0.20
13 2 0.04
16 3 0.07
17 22 0.49
18 9 0.20
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:15011051 original size:29 final size:29
Alignment explanation
Indices: 15011019--15011120 Score: 109
Period size: 29 Copynumber: 3.5 Consensus size: 29
15011009 CGAAACTTCT
*
15011019 AAAATTTACATTTTTACCCCTAAAATTCC
1 AAAAATTACATTTTTACCCCTAAAATTCC
* *
15011048 AAAAATTACATTTTTACCCCCGAAAA-TCT
1 AAAAATTACATTTTTA-CCCCTAAAATTCC
** *
15011077 AAAAATCCCATTTTTA-ACCTAGAAACTTCC
1 AAAAATTACATTTTTACCCCTA-AAA-TTCC
15011107 AAAAATTACATTTT
1 AAAAATTACATTTT
15011121 ACTCTCGGAT
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
27 3 0.05
28 3 0.05
29 31 0.53
30 22 0.37
ACGTcount: A:0.41, C:0.23, G:0.02, T:0.34
Consensus pattern (29 bp):
AAAAATTACATTTTTACCCCTAAAATTCC
Found at i:15011139 original size:58 final size:56
Alignment explanation
Indices: 15011027--15011211 Score: 151
Period size: 58 Copynumber: 3.2 Consensus size: 56
15011017 CTAAAATTTA
* * ** *
15011027 CATTTTTACCCCTA-AAATTCCAAAAATTACATTTTTACCCCCGAAAATCTAAAAATCC
1 CATTTTTA-ACCTAGAAATTCCAAAAATTACA-TTTTACCCTCGAATGTCCAAAAAT-C
* *
15011085 CATTTTTAACCTAGAAACTTCCAAAAATTACATTTTACTCTCGGATGTCCAAAAAATC
1 CATTTTTAACCTAGAAA-TTCCAAAAATTACATTTTACCCTCGAATGTCC-AAAAATC
* * ** * *
15011143 CATTTTTGATCC-CGATTTTTCCAAAAATTACCATTTTACCCTCGAATGT-CTAAAATGT
1 CATTTTT-AACCTAGA-AATTCCAAAAATTA-CATTTTACCCTCGAATGTCCAAAAAT-C
15011201 CATTTTTAACC
1 CATTTTTAACC
15011212 CCAAATTTTT
Statistics
Matches: 104, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
57 12 0.12
58 53 0.51
59 39 0.38
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.35
Consensus pattern (56 bp):
CATTTTTAACCTAGAAATTCCAAAAATTACATTTTACCCTCGAATGTCCAAAAATC
Found at i:15011178 original size:59 final size:60
Alignment explanation
Indices: 15011103--15011241 Score: 169
Period size: 59 Copynumber: 2.4 Consensus size: 60
15011093 ACCTAGAAAC
* * * * *
15011103 TTCCAAAAATTA-CATTTTACTCTCGGATGTCCAAAAAATCCATTTTTGATCCC-GA-TTT
1 TTCCAAAAATTACCATTTTACCCTCGAATGTCCAAAAAAT-CATTTTTAACCCCAAATTTT
* **
15011161 TTCCAAAAATTACCATTTTACCCTCGAATGTCTAAAATGTCATTTTTAACCCCAAATTTT
1 TTCCAAAAATTACCATTTTACCCTCGAATGTCCAAAAAATCATTTTTAACCCCAAATTTT
15011221 TTCC-AAAATTACCATTTTACC
1 TTCCAAAAATTACCATTTTACC
15011242 TCCGAGAGTC
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
58 23 0.33
59 40 0.57
60 7 0.10
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (60 bp):
TTCCAAAAATTACCATTTTACCCTCGAATGTCCAAAAAATCATTTTTAACCCCAAATTTT
Found at i:15017294 original size:49 final size:49
Alignment explanation
Indices: 15017166--15017294 Score: 152
Period size: 49 Copynumber: 2.6 Consensus size: 49
15017156 CGTAACGGTG
* * * *
15017166 GATCTAGTACCACGAAGACATGAAGGGAAAGATCTAAGCTGCGATGACG
1 GATCCAGTACCACGAAGACATGAAGGGAAAGATCTAAGCTACGAAGACA
* * * *
15017215 GACCCAGTACTACGAAGACAGGAAGAGAAAGATCTAAGCTACGACAG-CA
1 GATCCAGTACCACGAAGACATGAAGGGAAAGATCTAAGCTACGA-AGACA
**
15017264 GATCCAGTACCACGAAGATTTGAAGGGAAAG
1 GATCCAGTACCACGAAGACATGAAGGGAAAG
15017295 GTTTAAGTCA
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
49 64 0.98
50 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.27, T:0.14
Consensus pattern (49 bp):
GATCCAGTACCACGAAGACATGAAGGGAAAGATCTAAGCTACGAAGACA
Found at i:15018193 original size:205 final size:204
Alignment explanation
Indices: 15017705--15018690 Score: 1354
Period size: 204 Copynumber: 4.8 Consensus size: 204
15017695 ATATTTGAAC
* * * * * *
15017705 CCCAGCTTCCTGATGACATACTGAGAGGTAGGGCGAAGTAATAAAATGGGTAGCTTCCTGATGAG
1 CCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAG
** *
15017770 ATACTGAGAAGTGGACCAAATTAATCTTCCTGATGAGATACAGAGAAGCGATTTGAAACAAGTGA
66 ATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA-TTGAAACAAGCGA
* * * * * * * * *
15017835 GGCGGTCACCTTCCTGATGAGATACAGAGAAGTATACCAACTC-AA--G--GCTCAAAGTGAGTA
130 TGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCGACGCTCGATGTGAGCA
15017895 AATCTTCGAA
195 AATCTTCGAA
* * * *
15017905 CCCTAACTTCTTGATAAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTTATGA
1 CCC-AGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGA
* *
15017970 GATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGGTATAGAGAAGCGGATTGAAACAAGCG
65 GATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGC-GATTGAAACAAGCG
* * *
15018035 ATGCGGTCATCTTCTTGATGAGATACTGAGAAGAAGACCAAGTCAAACTGACGCTCGATGTGAGC
129 ATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCGACGCTCGATGTGAGC
15018100 AAATCTTCGAA
194 AAATCTTCGAA
*
15018111 CCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCTTGATGAG
1 CCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAG
*
15018176 ATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGGTACAGAGAAGCGATTGAAACAAGCGAT
66 ATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGATTGAAACAAGCGAT
* * * *
15018241 GCGGTCATCTTCCTGATAAGATACTAAAAAGAAGACCAAATCAAACCCACGCTCGATGTGAGCAA
131 GCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCGACGCTCGATGTGAGCAA
15018306 ATCTTCGAA
196 ATCTTCGAA
* *
15018315 CCCAGCTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCATGATGAG
1 CCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAG
* *
15018380 ATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGAGAAGCAGATTGAAACAAACGA
66 ATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGC-GATTGAAACAAGCGA
* * *
15018445 TGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACGAAATCAAACCAACGCTTGATGTGAGCA
130 TGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCGACGCTCGATGTGAGCA
15018510 AATCTTCGAA
195 AATCTTCGAA
** * *
15018520 CCCCTAGCTTTTTGATGAGATACTGAGAAGCAGGTCTAAGCAATAAAGTGGTTAGCTTCCTGATG
1 -CCC-AGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATG
* * * * * * ** *
15018585 AGATAC-AAGAAGTGAACCAAATCCGTCTTCCTGATGAAACACAGAGAAGTGGATCAAAACAAGT
64 AGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAG-CGATTGAAACAAGC
* * * *
15018649 GATGTGGTCATCTTTCTGATGAGATACAGAGAAGAAGGCCAA
128 GATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAA
15018691 GTCATTGAAA
Statistics
Matches: 704, Mismatches: 71, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
200 3 0.00
201 145 0.21
202 4 0.01
204 194 0.28
205 188 0.27
206 110 0.16
207 60 0.09
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (204 bp):
CCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAG
ATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGATTGAAACAAGCGAT
GCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCGACGCTCGATGTGAGCAA
ATCTTCGAA
Found at i:15018465 original size:409 final size:406
Alignment explanation
Indices: 15017701--15018690 Score: 1394
Period size: 409 Copynumber: 2.4 Consensus size: 406
15017691 ACAGATATTT
* * * * * *
15017701 GAACCCCAGCTTCCTGATGACATACTGAGAGGTAGGGCGAAGTAATAAAATGGGTAGCTTCCTGA
1 GAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGA
**
15017766 TGAGATACTGAGAAGTGGACCAAATTAATCTTCCTGATGAGATACAGAGAAGCGATTTGAAACAA
66 TGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA-TTGAAACAA
* * * * * * * *
15017831 GTGAGGCGGTCACCTTCCTGATGAGATACAGAGAAGTATACCAACTCAAGGCTCAAAGTGAGTAA
130 GTGATGCGGTCATCTTCCTGATGAGATACAGAAAAGAAGACCAAATCAACGCTCAAAGTGAGCAA
*
15017896 ATCTTCGAACCCTAACTTCTTGATAAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCT
195 ATCTTCGAACCCTAACTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCT
* * * * * *
15017961 TCCTTATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGGTATAGAGAAGCGGATTG
260 TCATGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGAGAAGCAGATTG
* * * **
15018026 AAACAAGCGATGCGGTCATCTTCTTGATGAGATACTGAGAAGAAGACCAAGTCAAACTGACGCTC
325 AAACAAACGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCAACGCTC
15018091 GATGTGAGCAAATCTTC
390 GATGTGAGCAAATCTTC
*
15018108 GAA-CCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCTTGA
1 GAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGA
*
15018172 TGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGGTACAGAGAAGCGATTGAAACAAG
66 TGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGATTGAAACAAG
* * * *
15018237 CGATGCGGTCATCTTCCTGATAAGATACTA-AAAAGAAGACCAAATCAAACCCACGCTCGATGTG
131 TGATGCGGTCATCTTCCTGATGAGATAC-AGAAAAGAAGACCAAATC--A---ACGCTCAAAGTG
*
15018301 AGCAAATCTTCGAACCC-AGCTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGT
190 AGCAAATCTTCGAACCCTAACTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGT
15018365 TAGCTTCATGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGAGAAGCA
255 TAGCTTCATGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGAGAAGCA
*
15018430 GATTGAAACAAACGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACGAAATCAAACCAA
320 GATTGAAACAAACGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCAA
*
15018495 CGCTTGATGTGAGCAAATCTTC
385 CGCTCGATGTGAGCAAATCTTC
** * *
15018517 GAACCCCTAGCTTTTTGATGAGATACTGAGAAGCAGGTCTAAGCAATAAAGTGGTTAGCTTCCTG
1 GAACCCC-AGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTG
* * * * * * **
15018582 ATGAGATAC-AAGAAGTGAACCAAATCCGTCTTCCTGATGAAACACAGAGAAGTGGATCAAAACA
65 ATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAG-CGATTGAAACA
* * * *
15018646 AGTGATGTGGTCATCTTTCTGATGAGATACAGAGAAGAAGGCCAA
129 AGTGATGCGGTCATCTTCCTGATGAGATACAGAAAAGAAGACCAA
15018691 GTCATTGAAA
Statistics
Matches: 516, Mismatches: 57, Indels: 16
0.88 0.10 0.03
Matches are distributed among these distances:
405 46 0.09
406 107 0.21
407 4 0.01
409 187 0.36
410 66 0.13
411 106 0.21
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (406 bp):
GAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGA
TGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGATTGAAACAAG
TGATGCGGTCATCTTCCTGATGAGATACAGAAAAGAAGACCAAATCAACGCTCAAAGTGAGCAAA
TCTTCGAACCCTAACTTCCTGATAAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTT
CATGATGAGATACTGAGAAGTGGACCAAATTCATCTTCCTGATGAGATACAGAGAAGCAGATTGA
AACAAACGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCAACGCTCG
ATGTGAGCAAATCTTC
Found at i:15019020 original size:17 final size:17
Alignment explanation
Indices: 15018995--15019038 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
15018985 ACCGAGCCCT
15018995 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
15019012 TTTAGATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
15019029 TTTGAATTTA
1 TTTAAATTTA
15019039 AATTAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:15019036 original size:23 final size:24
Alignment explanation
Indices: 15019010--15019054 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
15019000 ATTTATTTTA
* *
15019010 AATTTAGATTTATTTT-AAATTTG
1 AATTTAAATTAATTTTCAAATTTG
15019033 AATTTAAATTAATTTTCAAATT
1 AATTTAAATTAATTTTCAAATT
15019055 AAAAAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (24 bp):
AATTTAAATTAATTTTCAAATTTG
Found at i:15043701 original size:59 final size:59
Alignment explanation
Indices: 15043587--15043761 Score: 160
Period size: 58 Copynumber: 3.0 Consensus size: 59
15043577 TGACACTTTA
* ** * *
15043587 GACATCCGAGGGTAAAATGGTAATTTTTGGAAA-AATCGAGATCAAAAACA-AAATTTTTG
1 GACATCCGAGGGTAAAATTGTAATTTTT-GAAAGTTTCGAGGTCAAAAA-AGGAATTTTTG
* *
15043646 GACATCCAAGAGTAAAATTGTAATTTTTGAAAGTTTCGAGGTCAAAAAAGGAA-TTTTG
1 GACATCCGAGGGTAAAATTGTAATTTTTGAAAGTTTCGAGGTCAAAAAAGGAATTTTTG
** * * * * * *
15043704 GA-AGTTTGGGGGTAAAAATGTAATTTTTGGAAGTTTCGGGGTCAAAAATGGATTTTTT
1 GACA-TCCGAGGGTAAAATTGTAATTTTTGAAAGTTTCGAGGTCAAAAAAGGAATTTTT
15043762 AATTTTAGGG
Statistics
Matches: 95, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
57 1 0.01
58 51 0.54
59 43 0.45
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.32
Consensus pattern (59 bp):
GACATCCGAGGGTAAAATTGTAATTTTTGAAAGTTTCGAGGTCAAAAAAGGAATTTTTG
Found at i:15043731 original size:58 final size:57
Alignment explanation
Indices: 15043657--15043788 Score: 183
Period size: 58 Copynumber: 2.3 Consensus size: 57
15043647 ACATCCAAGA
* *
15043657 GTAAAATTGTAATTTTTGAAAGTTTCGAGGTCAAAAAAGGAATTTTGGAAGTTTGGGG
1 GTAAAAATGTAATTTTTGAAAGTTTCGAGGTCAAAAAAGG-ATTTTGGAAGTTTAGGG
* * * ** *
15043715 GTAAAAATGTAATTTTTGGAAGTTTCGGGGTCAAAAATGGATTTTTTAATTTTAGGG
1 GTAAAAATGTAATTTTTGAAAGTTTCGAGGTCAAAAAAGGATTTTGGAAGTTTAGGG
15043772 GTAAAAATGTAATTTTT
1 GTAAAAATGTAATTTTT
15043789 TTAAGTTTGG
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
57 30 0.45
58 36 0.55
ACGTcount: A:0.34, C:0.03, G:0.24, T:0.39
Consensus pattern (57 bp):
GTAAAAATGTAATTTTTGAAAGTTTCGAGGTCAAAAAAGGATTTTGGAAGTTTAGGG
Found at i:15043789 original size:58 final size:58
Alignment explanation
Indices: 15043657--15043807 Score: 187
Period size: 57 Copynumber: 2.6 Consensus size: 58
15043647 ACATCCAAGA
* * *
15043657 GTAAAATTGTAATTTTTGAAAGTTTCGAGGTCAAAAAAGGAATTTTGGAAGTTTGGGG
1 GTAAAAATGTAATTTTTGAAAGTTTCGGGGTCAAAAAAGGAATTTTGGAAGTTTAGGG
* * ** *
15043715 GTAAAAATGTAATTTTTGGAAGTTTCGGGGTCAAAAATGG-ATTTTTTAATTTTAGGG
1 GTAAAAATGTAATTTTTGAAAGTTTCGGGGTCAAAAAAGGAATTTTGGAAGTTTAGGG
** *
15043772 GTAAAAATGTAATTTTTTTAAGTTTGGGGGTACAAA
1 GTAAAAATGTAATTTTTGAAAGTTTCGGGGT-CAAA
15043808 TGTAATTTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
57 41 0.51
58 40 0.49
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.38
Consensus pattern (58 bp):
GTAAAAATGTAATTTTTGAAAGTTTCGGGGTCAAAAAAGGAATTTTGGAAGTTTAGGG
Found at i:15043823 original size:29 final size:29
Alignment explanation
Indices: 15043657--15043825 Score: 164
Period size: 29 Copynumber: 5.9 Consensus size: 29
15043647 ACATCCAAGA
* * * *
15043657 GTAAAATTGTAATTTTTGAAAGTTTCGAG
1 GTAAAAATGTAATTTTTGGAAGTTTGGGG
* *
15043686 GTCAAAAAAGGAA-TTTTGGAAGTTTGGGG
1 GT-AAAAATGTAATTTTTGGAAGTTTGGGG
*
15043715 GTAAAAATGTAATTTTTGGAAGTTTCGGG
1 GTAAAAATGTAATTTTTGGAAGTTTGGGG
* * * *
15043744 GTCAAAAATG-GATTTTT-TAATTTTAGGG
1 GT-AAAAATGTAATTTTTGGAAGTTTGGGG
**
15043772 GTAAAAATGTAATTTTTTTAAGTTTGGGG
1 GTAAAAATGTAATTTTTGGAAGTTTGGGG
* *
15043801 GTACAAATGTAATTTTTAGAAGTTT
1 GTAAAAATGTAATTTTTGGAAGTTT
15043826 CAAGGCCAAA
Statistics
Matches: 116, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
27 7 0.06
28 24 0.21
29 71 0.61
30 14 0.12
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40
Consensus pattern (29 bp):
GTAAAAATGTAATTTTTGGAAGTTTGGGG
Found at i:15045698 original size:6 final size:6
Alignment explanation
Indices: 15045687--15045742 Score: 62
Period size: 6 Copynumber: 9.7 Consensus size: 6
15045677 AATTTGAAAA
** * *
15045687 TAAATT TAAATT TAAATT CCAATT TAAA-A TAAATT TAAATT TAAA-A
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
15045733 TAAATT TAAA
1 TAAATT TAAA
15045743 AGGGCCTGGT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
5 8 0.20
6 32 0.80
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (6 bp):
TAAATT
Found at i:15045739 original size:17 final size:17
Alignment explanation
Indices: 15045687--15045742 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
15045677 AATTTGAAAA
*
15045687 TAAATTTAAATTTAAATT
1 TAAATTTAAA-ATAAATT
**
15045705 CCAATTTAAAATAAATT
1 TAAATTTAAAATAAATT
15045722 TAAATTTAAAATAAATT
1 TAAATTTAAAATAAATT
15045739 TAAA
1 TAAA
15045743 AGGGCCTGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
17 25 0.76
18 8 0.24
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATTTAAAATAAATT
Found at i:15054967 original size:12 final size:11
Alignment explanation
Indices: 15054937--15054971 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
15054927 AACTAAATCC
15054937 ATTTTAAATTT
1 ATTTTAAATTT
15054948 ATTTTAAATTT
1 ATTTTAAATTT
15054959 ATATTTAAATTT
1 AT-TTTAAATTT
15054971 A
1 A
15054972 AAATTATTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
ATTTTAAATTT
Found at i:15054971 original size:18 final size:17
Alignment explanation
Indices: 15054950--15054991 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
15054940 TTAAATTTAT
*
15054950 TTTAAATTTATATTTAAA
1 TTTAAATTTAT-TCTAAA
*
15054968 TTTAAAATTATTCTAAA
1 TTTAAATTTATTCTAAA
15054985 TTTAAAT
1 TTTAAAT
15054992 AAACAAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAAATTTATTCTAAA
Found at i:15055169 original size:3 final size:3
Alignment explanation
Indices: 15055161--15055214 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
15055151 AAATAGTATC
* * ** *
15055161 AAT AAT AAT CAAT AAT AAT AAT ACT ATT CTT AAT AGT AAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15055207 AAT AAT AA
1 AAT AAT AA
15055215 GGCAGTCGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:15056431 original size:29 final size:30
Alignment explanation
Indices: 15056342--15056933 Score: 203
Period size: 30 Copynumber: 20.0 Consensus size: 30
15056332 AGAAGGTCCT
* * * * * *
15056342 TGAACTGTCTAAAAATCATATTTTAACCCT
1 TGAACTTTCCAAAAATTACATTTTGACCCC
*
15056372 TAAACTTTCCAAAAATTACATTTTGACCCC
1 TGAACTTTCCAAAAATTACATTTTGACCCC
* *
15056402 TGAACTTTCCAAAATTTATATTATT-A-CCC
1 TGAACTTTCCAAAAATTACATT-TTGACCCC
* * *
15056431 TCAAAC-TTCATAAAAATTACCATTTT-ACCTC
1 T-GAACTTTC-CAAAAATTA-CATTTTGACCCC
* *
15056462 -GAA-TTTCCAAAAATTCCATTTTTTACCCC
1 TGAACTTTCCAAAAATTACA-TTTTGACCCC
* * *
15056491 -AAACTTTCCCAAAATTACCATTCT-ACTCCC
1 TGAACTTTCCAAAAATTA-CATTTTGAC-CCC
* * **
15056521 -GAAC-GTCCAAAAATTCCATTTTTCCCCC
1 TGAACTTTCCAAAAATTACATTTTGACCCC
*
15056549 TGAACTTCCCAAAAATTACCATTTT-ACACCC
1 TGAACTTTCCAAAAATTA-CATTTTGAC-CCC
* *
15056580 -AAAC-TTCCAAGAATT-CTATTTTTGACCCC
1 TGAACTTTCCAAAAATTAC-A-TTTTGACCCC
*
15056609 -GAACTTTCCCAAAATTACCATTTT-ACCCC
1 TGAACTTTCCAAAAATTA-CATTTTGACCCC
* * * * *
15056638 -CAAATGTT-TAAAAATTTCATTTTTGACTCC
1 TGAACT-TTCCAAAAATTACA-TTTTGACCCC
* * *
15056668 -AAACTTTCCAAATATTACCATTTT-A-TCC
1 TGAACTTTCCAAAAATTA-CATTTTGACCCC
* *
15056696 TCAGAC-TTCCAAAAATTCCATTTTTGACCCC
1 TGA-ACTTTCCAAAAATTACA-TTTTGACCCC
*
15056727 -GAACTTTCCCAAAATTACCATTTT-ACCCC
1 TGAACTTTCCAAAAATTA-CATTTTGACCCC
* * *
15056756 TAAAC-ATCCAAAAAATTTA-TTTTTGA--CC
1 TGAACTTTCC-AAAAA-TTACATTTTGACCCC
* * * *
15056784 TCATACTTTCCCAAAATTACCAGTTT-ACCCT
1 TGA-ACTTTCCAAAAATTA-CATTTTGACCCC
* * * * *
15056815 TAAAC-TTCCAATAATTCCATTTTTAACCC
1 TGAACTTTCCAAAAATTACATTTTGACCCC
* *
15056844 TAAACTTTCCCAAAATTACCATTTT-ACCCC
1 TGAACTTTCCAAAAATTA-CATTTTGACCCC
* * * *
15056874 CGAA-TGTCCAAAAATT-CTATTTTTTA-CCT
1 TGAACTTTCCAAAAATTAC-A-TTTTGACCCC
15056903 TGAAC-TTCCTAAAAATTACCATTTT-ACCCC
1 TGAACTTTCC-AAAAATTA-CATTTTGACCCC
15056933 T
1 T
15056934 AGCATCGAAA
Statistics
Matches: 421, Mismatches: 86, Indels: 110
0.68 0.14 0.18
Matches are distributed among these distances:
27 4 0.01
28 40 0.10
29 150 0.36
30 187 0.44
31 38 0.09
32 2 0.00
ACGTcount: A:0.33, C:0.28, G:0.04, T:0.35
Consensus pattern (30 bp):
TGAACTTTCCAAAAATTACATTTTGACCCC
Found at i:15056532 original size:59 final size:58
Alignment explanation
Indices: 15056373--15056932 Score: 492
Period size: 59 Copynumber: 9.5 Consensus size: 58
15056363 TTTAACCCTT
* * * ** *
15056373 AAACTTTCCAAAAATTA-CATTTTGACCCCTGAACTTTCCAAAATTTATATTATT-ACCCTC
1 AAACTTTCCCAAAATTACCATTTT-ACCCC-AAAC-TTCCAAAAATTCCATTTTTGACCC-C
** * * * *
15056433 AAAC-TTCATAAAAATTACCATTTTACCTCGAATTTCCAAAAATTCCATTTTTTACCCC
1 AAACTTTC-CCAAAATTACCATTTTACCCCAAACTTCCAAAAATTCCATTTTTGACCCC
* * * *
15056491 AAACTTTCCCAAAATTACCATTCTACTCCCGAACGTCCAAAAATTCCATTTTT-CCCCC
1 AAACTTTCCCAAAATTACCATTTTAC-CCCAAACTTCCAAAAATTCCATTTTTGACCCC
* * *
15056549 TGAAC-TTCCCAAAAATTACCATTTTACACCCAAACTTCCAAGAATTCTATTTTTGACCCC
1 -AAACTTTCCC-AAAATTACCATTTTAC-CCCAAACTTCCAAAAATTCCATTTTTGACCCC
* ** * *
15056609 GAACTTTCCCAAAATTACCATTTTACCCCCAAA-TGTTTAAAAATTTCATTTTTGACTCC
1 AAACTTTCCCAAAATTACCATTTTA-CCCCAAACT-TCCAAAAATTCCATTTTTGACCCC
* *
15056668 AAACTTT-CCAAATATTACCATTTTATCCTCAGACTTCCAAAAATTCCATTTTTGACCCC
1 AAACTTTCCCAAA-ATTACCATTTTA-CCCCAAACTTCCAAAAATTCCATTTTTGACCCC
* * * *
15056727 GAACTTTCCCAAAATTACCATTTTACCCCTAAACATCCAAAAAATT-TATTTTTGACCTC
1 AAACTTTCCCAAAATTACCATTTTACCCC-AAACTTCC-AAAAATTCCATTTTTGACCCC
* * * * * *
15056786 ATACTTTCCCAAAATTACCAGTTTACCCTTAAACTTCCAATAATTCCATTTTTAACCCT
1 AAACTTTCCCAAAATTACCATTTTACCC-CAAACTTCCAAAAATTCCATTTTTGACCCC
* * * **
15056845 AAACTTTCCCAAAATTACCATTTTACCCCCGAA-TGTCCAAAAATTCTATTTTTTACCTT
1 AAACTTTCCCAAAATTACCATTTTA-CCCCAAACT-TCCAAAAATTCCATTTTTGACCCC
* *
15056904 GAAC-TTCCTAAAAATTACCATTTTACCCC
1 AAACTTTCC-CAAAATTACCATTTTACCCC
15056933 TAGCATCGAA
Statistics
Matches: 417, Mismatches: 62, Indels: 44
0.80 0.12 0.08
Matches are distributed among these distances:
58 68 0.16
59 301 0.72
60 42 0.10
61 6 0.01
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.35
Consensus pattern (58 bp):
AAACTTTCCCAAAATTACCATTTTACCCCAAACTTCCAAAAATTCCATTTTTGACCCC
Found at i:15056676 original size:177 final size:175
Alignment explanation
Indices: 15056443--15056934 Score: 590
Period size: 177 Copynumber: 2.8 Consensus size: 175
15056433 AAACTTCATA
* *
15056443 AAAATTACCATTTTA-CCTCGAATTTCCAAAAATTCCATTTTTTACCCCAAACTTTCCCAAAATT
1 AAAATTACCATTTTACCCTCAAATTT-CAAAAATTCCA-TTTTTAACCCAAACTTTCCCAAAATT
* *
15056507 ACCATTCTACTCCCGAACGTCCAAAAATTCCATTTTTCCCCCTGAACTTCCCAAAAATTACCATT
64 ACCATTTTACTCCCGAACGTCCAAAAATTCCATTTTTACCCCTGAACTTCCCAAAAATTACCATT
* *
15056572 TTACACCC-AAACTTCC-AAGAATTCTATTTTTGACCCCGA-ACTTTCCC
129 TTAC-CCCTAAACATCCAAAAAATT-TATTTTTGACCCC-ATACTTTCCC
* * * *
15056619 AAAATTACCATTTTACCCCCAAATGTTTAAAAATTTCATTTTTGACTCCAAACTTT-CCAAATAT
1 AAAATTACCATTTTACCCTCAAAT-TTCAAAAATTCCATTTTTAAC-CCAAACTTTCCCAAA-AT
*
15056683 TACCATTTTA-TCCTC-AGACTTCCAAAAATTCCATTTTTGACCCC-GAACTTTCCC-AAAATTA
63 TACCATTTTACTCC-CGA-ACGTCCAAAAATTCCATTTTT-ACCCCTGAAC-TTCCCAAAAATTA
*
15056744 CCATTTTACCCCTAAACATCCAAAAAATTTATTTTTGACCTCATACTTTCCC
124 CCATTTTACCCCTAAACATCCAAAAAATTTATTTTTGACCCCATACTTTCCC
* * * *
15056796 AAAATTACCAGTTTACCCTTAAACTTCCAATAATTCCATTTTTAACCCTAAACTTTCCCAAAATT
1 AAAATTACCATTTTACCCTCAAA-TTTCAAAAATTCCATTTTTAACCC-AAACTTTCCCAAAATT
* * * * *
15056861 ACCATTTTACCCCCGAATGTCCAAAAATTCTATTTTTTA-CCTTGAACTTCCTAAAAATTACCAT
64 ACCATTTTACTCCCGAACGTCCAAAAATTCCA-TTTTTACCCCTGAACTTCCCAAAAATTACCAT
15056925 TTTACCCCTA
128 TTTACCCCTA
15056935 GCATCGAAAA
Statistics
Matches: 271, Mismatches: 26, Indels: 37
0.81 0.08 0.11
Matches are distributed among these distances:
176 42 0.15
177 198 0.73
178 31 0.11
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.35
Consensus pattern (175 bp):
AAAATTACCATTTTACCCTCAAATTTCAAAAATTCCATTTTTAACCCAAACTTTCCCAAAATTAC
CATTTTACTCCCGAACGTCCAAAAATTCCATTTTTACCCCTGAACTTCCCAAAAATTACCATTTT
ACCCCTAAACATCCAAAAAATTTATTTTTGACCCCATACTTTCCC
Found at i:15056931 original size:118 final size:116
Alignment explanation
Indices: 15056362--15056931 Score: 558
Period size: 118 Copynumber: 4.8 Consensus size: 116
15056352 AAAAATCATA
* * * *
15056362 TTTTAACCCTTAAACTTTCCAAAAATTA-CATTTTGACCCCTGAACTTTCC-AAAATTTATATTA
1 TTTTAACCC-CAAACTTTCCCAAAATTACCATTTT-ACCCCCGAA-TGTCCAAAAATTTAT-TT-
* * * *
15056425 TT-ACCCTCAAACTTCATAAAAATTACCATTTTA-CCTCGAATTTCCAAAAATTCCAT
61 TTGA-CCTTAAACTTC-CAAAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCAT
* * * * * **
15056481 TTTTTACCCCAAACTTTCCCAAAATTACCATTCTACTCCCGAACGTCCAAAAATTCCATTTTTCC
1 TTTTAACCCCAAACTTTCCCAAAATTACCATTTTACCCCCGAATGTCCAAAAATT-TATTTTTGA
* * * *
15056546 CCCTGAACTTCCCAAAAATTACCATTTTACACC-CAAACTTCCAAGAATTCTAT
65 CCTTAAACTT-CCAAAAATTACCATTTTAC-CCTCAAACTTCCAAAAATTCCAT
* * * **
15056599 TTTTGACCCCGAACTTTCCCAAAATTACCATTTTACCCCCAAATGTTTAAAAATTTCATTTTTGA
1 TTTTAACCCCAAACTTTCCCAAAATTACCATTTTACCCCCGAATGTCCAAAAATTT-ATTTTTGA
* * * *
15056664 -CTCCAAACTTTCCAAATATTACCATTTTATCCTCAGACTTCCAAAAATTCCAT
65 CCT-TAAAC-TTCCAAAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCAT
* * ** **
15056717 TTTTGACCCCGAACTTTCCCAAAATTACCATTTTACCCCTAAACATCCAAAAAATTTATTTTTGA
1 TTTTAACCCCAAACTTTCCCAAAATTACCATTTTACCCCCGAATGTCC-AAAAATTTATTTTTGA
* * * * * *
15056782 CCTCATACTTTCCCAAAATTACCAGTTTACCCTTAAACTTCCAATAATTCCAT
65 CCTTAAAC-TTCCAAAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCAT
* *
15056835 TTTTAACCCTAAACTTTCCCAAAATTACCATTTTACCCCCGAATGTCCAAAAATTCTATTTTTTA
1 TTTTAACCCCAAACTTTCCCAAAATTACCATTTTACCCCCGAATGTCCAAAAATT-TATTTTTGA
*
15056900 CCTTGAACTTCCTAAAAATTACCATTTTACCC
65 CCTTAAACTTCC-AAAAATTACCATTTTACCC
15056932 CTAGCATCGA
Statistics
Matches: 373, Mismatches: 63, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
117 42 0.11
118 302 0.81
119 29 0.08
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.35
Consensus pattern (116 bp):
TTTTAACCCCAAACTTTCCCAAAATTACCATTTTACCCCCGAATGTCCAAAAATTTATTTTTGAC
CTTAAACTTCCAAAAATTACCATTTTACCCTCAAACTTCCAAAAATTCCAT
Found at i:15075161 original size:14 final size:13
Alignment explanation
Indices: 15075143--15075174 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
15075133 AATAAGAGGG
15075143 AAAAAATTAAATT
1 AAAAAATTAAATT
15075156 AGAAAAATTAAATT
1 A-AAAAATTAAATT
15075170 AAAAA
1 AAAAA
15075175 TGCAAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (13 bp):
AAAAAATTAAATT
Found at i:15075189 original size:21 final size:18
Alignment explanation
Indices: 15075164--15075203 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
15075154 TTAGAAAAAT
*
15075164 TAAATTAAAAATGCAAATAA
1 TAAAATAAAAAT--AAATAA
15075184 TAAAATAAAAATAAATAA
1 TAAAATAAAAATAAATAA
15075202 TA
1 TA
15075204 CAAAAAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
20 11 0.58
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (18 bp):
TAAAATAAAAATAAATAA
Found at i:15076410 original size:13 final size:13
Alignment explanation
Indices: 15076389--15076422 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
15076379 TAAATAATAT
15076389 AATAATAATCCTA
1 AATAATAATCCTA
*
15076402 AATATTAATCCTA
1 AATAATAATCCTA
*
15076415 AAAAATAA
1 AATAATAA
15076423 ATTTTAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (13 bp):
AATAATAATCCTA
Found at i:15092968 original size:29 final size:29
Alignment explanation
Indices: 15092906--15093053 Score: 142
Period size: 29 Copynumber: 5.1 Consensus size: 29
15092896 GTGAATTTGA
* *
15092906 GGTCAAAATGTAATTTTAGG-AAGTTTTGG
1 GGTCAAAATGTGATTTTAGGAAAG-TTTAG
*
15092935 GGTCAAATTGTGATTTTAGG-AAGTTTAG
1 GGTCAAAATGTGATTTTAGGAAAGTTTAG
*
15092963 GTGTCAAAATATGATTTT-GTGAAAGTTTAAG
1 G-GTCAAAATGTGATTTTAG-GAAAGTTT-AG
* * *
15092994 GGTGAAAATGTTATTTTGGGAAAGTTTAG
1 GGTCAAAATGTGATTTTAGGAAAGTTTAG
* *
15093023 GGTTAAAATATGATTTT-GTGAAAGTTTAG
1 GGTCAAAATGTGATTTTAG-GAAAGTTTAG
15093052 GG
1 GG
15093054 GTTAAAATAT
Statistics
Matches: 102, Mismatches: 11, Indels: 12
0.82 0.09 0.10
Matches are distributed among these distances:
28 7 0.07
29 64 0.63
30 27 0.26
31 4 0.04
ACGTcount: A:0.32, C:0.02, G:0.28, T:0.39
Consensus pattern (29 bp):
GGTCAAAATGTGATTTTAGGAAAGTTTAG
Found at i:15092991 original size:30 final size:29
Alignment explanation
Indices: 15092955--15093069 Score: 149
Period size: 30 Copynumber: 3.9 Consensus size: 29
15092945 TGATTTTAGG
*
15092955 AAGTTTAGGTGTCAAAATATGATTTTGTGA
1 AAGTTTAGG-GTTAAAATATGATTTTGTGA
* * * *
15092985 AAGTTTAAGGGTGAAAATGTTATTTTGGGA
1 AAGTTT-AGGGTTAAAATATGATTTTGTGA
15093015 AAGTTTAGGGTTAAAATATGATTTTGTGA
1 AAGTTTAGGGTTAAAATATGATTTTGTGA
*
15093044 AAGTTTAGGGGTTAAAATATAATTTT
1 AAGTTTA-GGGTTAAAATATGATTTT
15093070 TAGATAAAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
29 26 0.35
30 45 0.61
31 3 0.04
ACGTcount: A:0.35, C:0.01, G:0.24, T:0.40
Consensus pattern (29 bp):
AAGTTTAGGGTTAAAATATGATTTTGTGA
Found at i:15093031 original size:59 final size:59
Alignment explanation
Indices: 15092947--15093061 Score: 178
Period size: 59 Copynumber: 1.9 Consensus size: 59
15092937 TCAAATTGTG
15092947 ATTTTAGGAAGTTTAGGTGTCAAAATATGATTTTGTGAAAGTTTAAGGGTGAAAATGTT
1 ATTTTAGGAAGTTTAGGTGTCAAAATATGATTTTGTGAAAGTTTAAGGGTGAAAATGTT
* * * *
15093006 ATTTTGGGAAAGTTTAGG-GTTAAAATATGATTTTGTGAAAGTTTAGGGGTTAAAAT
1 ATTTTAGG-AAGTTTAGGTGTCAAAATATGATTTTGTGAAAGTTTAAGGGTGAAAAT
15093062 ATAATTTTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
59 42 0.82
60 9 0.18
ACGTcount: A:0.34, C:0.01, G:0.26, T:0.39
Consensus pattern (59 bp):
ATTTTAGGAAGTTTAGGTGTCAAAATATGATTTTGTGAAAGTTTAAGGGTGAAAATGTT
Found at i:15093083 original size:59 final size:59
Alignment explanation
Indices: 15092968--15093083 Score: 144
Period size: 59 Copynumber: 2.0 Consensus size: 59
15092958 TTTAGGTGTC
* * * **
15092968 AAAATATGATTTTGTGAAAGTTTAAGGGTGAAAATGTTATTTTGGGAAAGTTTAGGGTT
1 AAAATATGATTTTGTGAAAGTTTAAGGGTGAAAATATAATTTTGAGAAAGAATAGGGTT
* * *
15093027 AAAATATGATTTTGTGAAAGTTTAGGGGTTAAAATATAATTTTTAGATAA-AATAGGG
1 AAAATATGATTTTGTGAAAGTTTAAGGGTGAAAATATAATTTTGAGA-AAGAATAGGG
15093084 GCTTTATGCA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
59 46 0.96
60 2 0.04
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (59 bp):
AAAATATGATTTTGTGAAAGTTTAAGGGTGAAAATATAATTTTGAGAAAGAATAGGGTT
Done.