Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 55 of 132
Found at i:15463365 original size:11 final size:11
Alignment explanation
Indices: 15463351--15463426 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
15463341 GATAATCACT
15463351 TTAATATTAAA
1 TTAATATTAAA
15463362 TTAATA--AAA
1 TTAATATTAAA
*
15463371 -TACTATTAAA
1 TTAATATTAAA
*
15463381 ATAAGTATTAAA
1 TTAA-TATTAAA
15463393 TTTAAT-TTAATA
1 -TTAATATTAA-A
15463405 TTAAACTATTAAA
1 TT-AA-TATTAAA
*
15463418 ATAATATTA
1 TTAATATTA
15463427 TTTTTGAAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 18
0.70 0.05 0.24
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 3 0.06
11 19 0.37
12 13 0.25
13 6 0.12
14 4 0.08
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:15464147 original size:14 final size:14
Alignment explanation
Indices: 15464128--15464157 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15464118 ATACACAAGT
15464128 CATATTTAGCAATC
1 CATATTTAGCAATC
*
15464142 CATATTTATCAATC
1 CATATTTAGCAATC
15464156 CA
1 CA
15464158 CACAATGCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (14 bp):
CATATTTAGCAATC
Found at i:15464915 original size:45 final size:45
Alignment explanation
Indices: 15464880--15465080 Score: 242
Period size: 45 Copynumber: 4.4 Consensus size: 45
15464870 CTTATATCAC
* *
15464880 AATCAATCAAATAATATCTACCAAATCATGCATATCGTACAGCAT
1 AATCAATCAAATAATATCTACCATATCATGCATATCGTACAACAT
* * * * * *
15464925 AATTAATTAAATTACATTTACCATATCATGCATATCGTATTAACAT
1 AATCAATCAAATAATATCTACCATATCATGCATATCGTA-CAACAT
15464971 AATCAATCAAATAATA-CTTACCATATCATGCATATCGTACAACAT
1 AATCAATCAAATAATATC-TACCATATCATGCATATCGTACAACAT
* **
15465016 AATCAATCAAATAATAATATTTACTGTATCATGCATATCGTACAACAT
1 AATCAATC--A-AATAATATCTACCATATCATGCATATCGTACAACAT
*
15465064 AATTAATCAAATAATAT
1 AATCAATCAAATAATAT
15465081 TACTTCATGG
Statistics
Matches: 132, Mismatches: 18, Indels: 12
0.81 0.11 0.07
Matches are distributed among these distances:
45 54 0.41
46 38 0.29
47 1 0.01
48 39 0.30
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (45 bp):
AATCAATCAAATAATATCTACCATATCATGCATATCGTACAACAT
Found at i:15464975 original size:23 final size:23
Alignment explanation
Indices: 15464949--15465020 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
15464939 CATTTACCAT
15464949 ATCATGCATATCGTATTAACATA
1 ATCATGCATATCGTATTAACATA
* ** *
15464972 ATCAAT-CAAATAATACTTACCAT-
1 ATC-ATGCATATCGTA-TTAACATA
*
15464995 ATCATGCATATCGTA-CAACATA
1 ATCATGCATATCGTATTAACATA
15465017 ATCA
1 ATCA
15465021 ATCAAATAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 9
0.67 0.17 0.17
Matches are distributed among these distances:
21 4 0.11
22 6 0.17
23 18 0.50
24 8 0.22
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.31
Consensus pattern (23 bp):
ATCATGCATATCGTATTAACATA
Found at i:15464981 original size:91 final size:93
Alignment explanation
Indices: 15464880--15465080 Score: 275
Period size: 91 Copynumber: 2.2 Consensus size: 93
15464870 CTTATATCAC
* * *
15464880 AATCAATCAAATAATATC-TACCAAATCATGCATATCGTACAGCATAATTAATTAAAT-T-ACAT
1 AATCAATCAAATAATATCTTACCAAATCATGCATATCGTACAACATAATCAATCAAATATAACAT
*
15464942 TTACCATATCATGCATATCGTATTAACAT
66 TTACCATATCATGCATATCGTA-CAACAT
* *
15464971 AATCAATCAAATAATA-CTTACCATATCATGCATATCGTACAACATAATCAATCAAATAATAATA
1 AATCAATCAAATAATATCTTACCAAATCATGCATATCGTACAACATAATCAATCAAAT-ATAACA
**
15465035 TTTACTGTATCATGCATATCGTACAACAT
65 TTTACCATATCATGCATATCGTACAACAT
*
15465064 AATTAATCAAATAATAT
1 AATCAATCAAATAATAT
15465081 TACTTCATGG
Statistics
Matches: 96, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
90 1 0.01
91 51 0.53
93 21 0.22
94 23 0.24
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (93 bp):
AATCAATCAAATAATATCTTACCAAATCATGCATATCGTACAACATAATCAATCAAATATAACAT
TTACCATATCATGCATATCGTACAACAT
Found at i:15465051 original size:48 final size:48
Alignment explanation
Indices: 15464889--15465079 Score: 232
Period size: 48 Copynumber: 4.1 Consensus size: 48
15464879 CAATCAATCA
* * * * *
15464889 AATAATATCTACCAAATCATGCATATCGTACAGCATAATTAATTAAAT
1 AATAATATTTACCATATCATGCATATCGTACAACATAATCAATCAAAT
* *
15464937 --T-ACATTTACCATATCATGCATATCGTATTAACATAATCAATC--A-
1 AATAATATTTACCATATCATGCATATCGTA-CAACATAATCAATCAAAT
*
15464980 AATAATACTTACCATATCATGCATATCGTACAACATAATCAATCAAAT
1 AATAATATTTACCATATCATGCATATCGTACAACATAATCAATCAAAT
** *
15465028 AATAATATTTACTGTATCATGCATATCGTACAACATAATTAATCAAAT
1 AATAATATTTACCATATCATGCATATCGTACAACATAATCAATCAAAT
15465076 AATA
1 AATA
15465080 TTACTTCATG
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
44 1 0.01
45 37 0.30
46 35 0.29
47 1 0.01
48 48 0.39
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (48 bp):
AATAATATTTACCATATCATGCATATCGTACAACATAATCAATCAAAT
Found at i:15467490 original size:18 final size:18
Alignment explanation
Indices: 15467467--15467528 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
15467457 TAGAGGGAAT
*
15467467 AGTAATACTGCCTCGTTG
1 AGTAATACTGACTCGTTG
* * * *
15467485 AGTAATATTTACACGTAAG
1 AGTAATACTGACTCGT-TG
*
15467504 AGTAATACTGGCTCGTTG
1 AGTAATACTGACTCGTTG
*
15467522 AGCAATA
1 AGTAATA
15467529 TTGGCTCGTA
Statistics
Matches: 32, Mismatches: 11, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
18 19 0.59
19 13 0.41
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (18 bp):
AGTAATACTGACTCGTTG
Found at i:15467519 original size:37 final size:37
Alignment explanation
Indices: 15467467--15467565 Score: 117
Period size: 37 Copynumber: 2.7 Consensus size: 37
15467457 TAGAGGGAAT
* * * *
15467467 AGTAATACTGCCTCGTTGAGTAATATTTACACGTAAG
1 AGTAATACTGGCTCGTTGAGCAATATTGACACGTAAA
* *
15467504 AGTAATACTGGCTCGTTGAGCAATATTGGCTCGTAAA
1 AGTAATACTGGCTCGTTGAGCAATATTGACACGTAAA
* **
15467541 AGCAATACTGGCTTATTGAGCAATA
1 AGTAATACTGGCTCGTTGAGCAATA
15467566 CTGGCTTGTA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (37 bp):
AGTAATACTGGCTCGTTGAGCAATATTGACACGTAAA
Found at i:15467533 original size:18 final size:18
Alignment explanation
Indices: 15467507--15467587 Score: 81
Period size: 18 Copynumber: 4.4 Consensus size: 18
15467497 ACGTAAGAGT
15467507 AATACTGGCTCGTTGAGC
1 AATACTGGCTCGTTGAGC
* **
15467525 AATATTGGCTCGTAAAAGC
1 AATACTGGCTCGT-TGAGC
**
15467544 AATACTGGCTTATTGAGC
1 AATACTGGCTCGTTGAGC
* *
15467562 AATACTGGCTTGTAAGAGC
1 AATACTGGCTCGT-TGAGC
15467581 AATACTG
1 AATACTG
15467588 ACTCATAAGT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
18 27 0.53
19 24 0.47
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (18 bp):
AATACTGGCTCGTTGAGC
Found at i:15467571 original size:37 final size:37
Alignment explanation
Indices: 15467498--15467593 Score: 129
Period size: 37 Copynumber: 2.6 Consensus size: 37
15467488 AATATTTACA
* * *
15467498 CGTAAGAGTAATACTGGCTCGTTGAGCAATATTGGCT
1 CGTAAGAGCAATACTGGCTCATTGAGCAATACTGGCT
* *
15467535 CGTAAAAGCAATACTGGCTTATTGAGCAATACTGGCT
1 CGTAAGAGCAATACTGGCTCATTGAGCAATACTGGCT
* *
15467572 TGTAAGAGCAATACTGACTCAT
1 CGTAAGAGCAATACTGGCTCAT
15467594 AAGTGCAATA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (37 bp):
CGTAAGAGCAATACTGGCTCATTGAGCAATACTGGCT
Found at i:15467582 original size:19 final size:19
Alignment explanation
Indices: 15467498--15467603 Score: 101
Period size: 19 Copynumber: 5.7 Consensus size: 19
15467488 AATATTTACA
*
15467498 CGTAAGAGTAATACTGGCT
1 CGTAAGAGCAATACTGGCT
* *
15467517 CGT-TGAGCAATATTGGCT
1 CGTAAGAGCAATACTGGCT
*
15467535 CGTAAAAGCAATACTGGCT
1 CGTAAGAGCAATACTGGCT
*
15467554 --TATTGAGCAATACTGGCT
1 CGTA-AGAGCAATACTGGCT
* *
15467572 TGTAAGAGCAATACTGACT
1 CGTAAGAGCAATACTGGCT
* *
15467591 CATAAGTGCAATA
1 CGTAAGAGCAATA
15467604 TTGGATCATA
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
17 2 0.03
18 28 0.40
19 38 0.54
20 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (19 bp):
CGTAAGAGCAATACTGGCT
Found at i:15468291 original size:21 final size:21
Alignment explanation
Indices: 15468267--15468324 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
15468257 TAGAAGTAAA
* *
15468267 ACTTGTTTCAGTAGAAGAGTC
1 ACTTGTATCGGTAGAAGAGTC
**
15468288 ACTTGTATCGGTAGAATTGTC
1 ACTTGTATCGGTAGAAGAGTC
15468309 ACTTGTATCGGTAGAA
1 ACTTGTATCGGTAGAA
15468325 ATTTGTACTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (21 bp):
ACTTGTATCGGTAGAAGAGTC
Found at i:15468990 original size:2 final size:2
Alignment explanation
Indices: 15468983--15469015 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
15468973 GAAAACTAGG
15468983 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15469016 AAGAGAGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15469087 original size:21 final size:21
Alignment explanation
Indices: 15469062--15469105 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
15469052 AGAGTTTTAG
* *
15469062 TATAATTAGAAAGGAAAAGAA
1 TATAAATAGAAAGAAAAAGAA
* *
15469083 TATAAATATAAATAAAAAGAA
1 TATAAATAGAAAGAAAAAGAA
15469104 TA
1 TA
15469106 AGTTCTAGTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (21 bp):
TATAAATAGAAAGAAAAAGAA
Found at i:15470111 original size:30 final size:30
Alignment explanation
Indices: 15470071--15470383 Score: 306
Period size: 29 Copynumber: 10.6 Consensus size: 30
15470061 GAGAATTTGA
*
15470071 GGTTAAAATGTAATTTTGGAAAAATTTAGG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
* *
15470101 GGTAAAAATGTGATTTTGGAAAAGTTTA-G
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
* * * * * *
15470130 CGTCAAAATGTAGTTGTT-AAAAACTTTA-A
1 GGTTAAAATGTAATT-TTGGAAAAGTTTAGG
*
15470159 GGTCAAAATGTAATTTTGGAAAAGTTTAGG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
* *
15470189 GGTTAAAATGTGATTTTTGAAAAGTTTA-G
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
* * *
15470218 GGTAAAAATGTAATTTT-TAAAAGTTTAAG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
* *
15470247 GGTCAAAATGTAATTTTAGG--AAGTTTAAG
1 GGTTAAAATGTAATTTT-GGAAAAGTTTAGG
* *
15470276 GGTTAAAATGTGATTTTGGAAAAGTTT-GA
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGG
* *
15470305 GGTAAAAATGTAATTTTTGAAAAGTTT-GAG
1 GGTTAAAATGTAATTTTGGAAAAGTTTAG-G
15470335 GGTTAAAATGTAATTTTAGG-AAAGTTT-GG
1 GGTTAAAATGTAATTTT-GGAAAAGTTTAGG
*
15470364 GGTTTAAAATGTGATTTTGG
1 GG-TTAAAATGTAATTTTGG
15470384 GAAGTTCGAG
Statistics
Matches: 238, Mismatches: 34, Indels: 23
0.81 0.12 0.08
Matches are distributed among these distances:
28 13 0.05
29 128 0.54
30 96 0.40
31 1 0.00
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (30 bp):
GGTTAAAATGTAATTTTGGAAAAGTTTAGG
Found at i:15470389 original size:59 final size:59
Alignment explanation
Indices: 15470071--15470381 Score: 328
Period size: 59 Copynumber: 5.3 Consensus size: 59
15470061 GAGAATTTGA
* * * *
15470071 GGTTAAAATGTAATTTTGGAAAAATTTAGGGGTAAAAATGTGATTTTGGAAAAGTTTA-G
1 GGTTAAAATGTAATTTTTGAAAAGTTTA-GGGTTAAAATGTAATTTTGGAAAAGTTTAGG
* * * * * * * *
15470130 CGTCAAAATGTAGTTGTTAAAAACTTTAAGGTCAAAATGTAATTTTGGAAAAGTTTAGG
1 GGTTAAAATGTAATTTTTGAAAAGTTTAGGGTTAAAATGTAATTTTGGAAAAGTTTAGG
* * * *
15470189 GGTTAAAATGTGATTTTTGAAAAGTTTAGGGTAAAAATGTAATTTT-TAAAAGTTTAAG
1 GGTTAAAATGTAATTTTTGAAAAGTTTAGGGTTAAAATGTAATTTTGGAAAAGTTTAGG
* * * * *
15470247 GGTCAAAATGTAATTTTAG-GAAGTTTAAGGGTTAAAATGTGATTTTGGAAAAGTTT-GA
1 GGTTAAAATGTAATTTTTGAAAAGTTT-AGGGTTAAAATGTAATTTTGGAAAAGTTTAGG
*
15470305 GGTAAAAATGTAATTTTTGAAAAGTTTGAGGGTTAAAATGTAATTTTAGG-AAAGTTT-GG
1 GGTTAAAATGTAATTTTTGAAAAGTTT-AGGGTTAAAATGTAATTTT-GGAAAAGTTTAGG
*
15470364 GGTTTAAAATGTGATTTT
1 GG-TTAAAATGTAATTTT
15470382 GGGAAGTTCG
Statistics
Matches: 208, Mismatches: 38, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
57 6 0.03
58 86 0.41
59 101 0.49
60 15 0.07
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (59 bp):
GGTTAAAATGTAATTTTTGAAAAGTTTAGGGTTAAAATGTAATTTTGGAAAAGTTTAGG
Found at i:15470389 original size:88 final size:87
Alignment explanation
Indices: 15470066--15470383 Score: 414
Period size: 88 Copynumber: 3.6 Consensus size: 87
15470056 TTTCAGAGAA
* * *
15470066 TTTGA-GGTTAAAATGTAATTTTGGAAAAATTTAGGGGTAAAAATGTGATTTTGGAAAAGTTTAG
1 TTTGAGGGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTTAAAATGTGATTTTGGAAAAGTTTAG
* * * *
15470130 CGTCAAAATGTAGTTGTTAAAAAC
66 -GTAAAAATGTAATT-TTTAAAAG
* *
15470154 TTT-AAGGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTTAAAATGTGATTTTTGAAAAGTTTAG
1 TTTGAGGGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTTAAAATGTGATTTTGGAAAAGTTTA-
15470218 GGTAAAAATGTAATTTTTAAAAG
65 GGTAAAAATGTAATTTTTAAAAG
* *
15470241 TTTAAGGGTCAAAATGTAATTTTAGG--AAGTTTAAGGGTTAAAATGTGATTTTGGAAAAGTTTG
1 TTTGAGGGTCAAAATGTAATTTT-GGAAAAGTTTAGGGGTTAAAATGTGATTTTGGAAAAGTTT-
15470304 AGGTAAAAATGTAATTTTTGAAAAG
64 AGGTAAAAATGTAATTTTT-AAAAG
*
15470329 TTTGAGGGTTAAAATGTAATTTTAGG-AAAGTTT-GGGGTTTAAAATGTGATTTTGG
1 TTTGAGGGTCAAAATGTAATTTT-GGAAAAGTTTAGGGG-TTAAAATGTGATTTTGG
15470384 GAAGTTCGAG
Statistics
Matches: 208, Mismatches: 14, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
87 62 0.30
88 120 0.58
89 26 0.12
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (87 bp):
TTTGAGGGTCAAAATGTAATTTTGGAAAAGTTTAGGGGTTAAAATGTGATTTTGGAAAAGTTTAG
GTAAAAATGTAATTTTTAAAAG
Found at i:15472442 original size:78 final size:77
Alignment explanation
Indices: 15472253--15472810 Score: 560
Period size: 78 Copynumber: 7.2 Consensus size: 77
15472243 TGAGATGATA
* * * * ** *
15472253 GCTTCAATCTACCCCATGATCGGGGTAAGAGATTGGTATGCCTTCAATTTGTCTTC-TGATTAAG
1 GCTTCAATCTGCCCCATGATCAGGGTAAGAGATTGG-ATGGCTTCAATCTG-CCCCATGATTAGG
15472317 GTAAAAGATTGGAT
64 GTAAAAGATTGGAT
* * *
15472331 GCTTCAATCT-ACCCATGATCAGGGTAAGTGATTGGATGGCTGCAATCTGCCCCATGATTAGGGT
1 GCTTCAATCTGCCCCATGATCAGGGTAAGAGATTGGATGGCTTCAATCTGCCCCATGATTAGGGT
15472395 AAAAGATTGGAT
66 AAAAGATTGGAT
* * **
15472407 GGCTACAATCTGCCCCATGATCAGGGTAAGAGATTGGAT-GCTTCAATCTGCCCCATGGTCGGGG
1 -GCTTCAATCTGCCCCATGATCAGGGTAAGAGATTGGATGGCTTCAATCTGCCCCATGATTAGGG
*
15472471 TAAGAGATTGGAT
65 TAAAAGATTGGAT
* * * **
15472484 GCTTTAATCTGCCCCATGGTC-GGGATAAGAGATTGGATGATCTTCAATCTGCCCTTTGATTAGG
1 GCTTCAATCTGCCCCATGATCAGGG-TAAGAGATTGGATG-GCTTCAATCTGCCCCATGATTAGG
15472548 GTAAAAGATTGGAT
64 GTAAAAGATTGGAT
* * * * **
15472562 GCTTCAATCTACCCCATGATCGGGGTAAAAGATTGGATGGTCTTCAATTTGCCCTTTGATTAGGG
1 GCTTCAATCTGCCCCATGATCAGGGTAAGAGATTGGATGG-CTTCAATCTGCCCCATGATTAGGG
*
15472627 TAAAAGATTAGAT
65 TAAAAGATTGGAT
* * * * * * **
15472640 GGCTACAATTTGCCTCATGATC-GAGGTAAGAGATTGGAT-GCTTCAATTTGCCTCATGGTCGGG
1 -GCTTCAATCTGCCCCATGATCAG-GGTAAGAGATTGGATGGCTTCAATCTGCCCCATGATTAGG
*
15472703 GTAAGAGATTGGAT
64 GTAAAAGATTGGAT
* * *
15472717 GATCTTCAATCTGCCCTC-T-ACTTAGGGTAAAAGACTGGAT-GCTTCAATCTGCCCCATGATTA
1 G--CTTCAATCTGCCC-CATGA-TCAGGGTAAGAGATTGGATGGCTTCAATCTGCCCCATGATTA
15472779 GGGTAAAAGATTAGG-T
62 GGGTAAAAGATT-GGAT
* *
15472795 TCTTCAATTTGCCCCA
1 GCTTCAATCTGCCCCA
15472811 CTGTAACTTA
Statistics
Matches: 402, Mismatches: 61, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
75 6 0.01
76 76 0.19
77 94 0.23
78 188 0.47
79 38 0.09
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (77 bp):
GCTTCAATCTGCCCCATGATCAGGGTAAGAGATTGGATGGCTTCAATCTGCCCCATGATTAGGGT
AAAAGATTGGAT
Found at i:15472463 original size:38 final size:38
Alignment explanation
Indices: 15472253--15472810 Score: 509
Period size: 38 Copynumber: 14.4 Consensus size: 38
15472243 TGAGATGATA
* * *
15472253 GCTTCAATCTACCCCATGATCGGGGTAAGAGATTGGTAT
1 GCTTCAATCTGCCCCATGATCAGGGTAAAAGATTGG-AT
* ** * *
15472292 GCCTTCAATTTGTCTTC-TGATTAAGGTAAAAGATTGGAT
1 G-CTTCAATCTG-CCCCATGATCAGGGTAAAAGATTGGAT
* **
15472331 GCTTCAATCT-ACCCATGATCAGGGTAAGTGATTGGAT
1 GCTTCAATCTGCCCCATGATCAGGGTAAAAGATTGGAT
* *
15472368 GGCTGCAATCTGCCCCATGATTAGGGTAAAAGATTGGAT
1 -GCTTCAATCTGCCCCATGATCAGGGTAAAAGATTGGAT
* *
15472407 GGCTACAATCTGCCCCATGATCAGGGTAAGAGATTGGAT
1 -GCTTCAATCTGCCCCATGATCAGGGTAAAAGATTGGAT
* * *
15472446 GCTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGAT
1 GCTTCAATCTGCCCCATGATCAGGGTAAAAGATTGGAT
* * *
15472484 GCTTTAATCTGCCCCATGGTC-GGGATAAGAGATTGGAT
1 GCTTCAATCTGCCCCATGATCAGGG-TAAAAGATTGGAT
** *
15472522 GATCTTCAATCTGCCCTTTGATTAGGGTAAAAGATTGGAT
1 G--CTTCAATCTGCCCCATGATCAGGGTAAAAGATTGGAT
* *
15472562 GCTTCAATCTACCCCATGATCGGGGTAAAAGATTGGAT
1 GCTTCAATCTGCCCCATGATCAGGGTAAAAGATTGGAT
* ** * *
15472600 GGTCTTCAATTTGCCCTTTGATTAGGGTAAAAGATTAGAT
1 -G-CTTCAATCTGCCCCATGATCAGGGTAAAAGATTGGAT
* * * *
15472640 GGCTACAATTTGCCTCATGATC-GAGGTAAGAGATTGGAT
1 -GCTTCAATCTGCCCCATGATCAG-GGTAAAAGATTGGAT
* * * * *
15472679 GCTTCAATTTGCCTCATGGTCGGGGTAAGAGATTGGAT
1 GCTTCAATCTGCCCCATGATCAGGGTAAAAGATTGGAT
* *
15472717 GATCTTCAATCTGCCCTC-T-ACTTAGGGTAAAAGACTGGAT
1 G--CTTCAATCTGCCC-CATGA-TCAGGGTAAAAGATTGGAT
*
15472757 GCTTCAATCTGCCCCATGATTAGGGTAAAAGATTAGG-T
1 GCTTCAATCTGCCCCATGATCAGGGTAAAAGATT-GGAT
* *
15472795 TCTTCAATTTGCCCCA
1 GCTTCAATCTGCCCCA
15472811 CTGTAACTTA
Statistics
Matches: 434, Mismatches: 65, Indels: 41
0.80 0.12 0.08
Matches are distributed among these distances:
36 1 0.00
37 22 0.05
38 197 0.45
39 96 0.22
40 112 0.26
41 6 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (38 bp):
GCTTCAATCTGCCCCATGATCAGGGTAAAAGATTGGAT
Found at i:15472802 original size:233 final size:229
Alignment explanation
Indices: 15472309--15472790 Score: 675
Period size: 233 Copynumber: 2.1 Consensus size: 229
15472299 ATTTGTCTTC
* **
15472309 TGATTAAGGTAAAAGATTGGATGCTTCAATCTACCCATGATCAGGGTAAGTGATTGGATGGCTGC
1 TGATTAGGGTAAAAGATTGGATGCTTCAATCTACCCATGATCAGGGTAAAAGATTGGATGGCTGC
*
15472374 AATCTGCCCCATGATTAGGGTAAAAGATTGGATGGCTACAATCTGCCCCATGATCAGGGTAAGAG
66 AATCTGCCCCATGATTAGGGTAAAAGATTAGATGGCTACAATCTGCCCCATGATCAGGGTAAGAG
*
15472439 ATTGGATGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGCTTTAATCTGCCCCATGGT
131 ATTGGATGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGCTTCAATCTGCCCCAT-GT
* * * **
15472504 CGGGATAAGAGATTGGATGATCTTCAATCTGCCCTT
195 AGGGATAAAAGACTGGATGA-CTTCAATCTGCCCCA
*
15472540 TGATTAGGGTAAAAGATTGGATGCTTCAATCTACCCCATGATCGGGGTAAAAGATTGGATGGTCT
1 TGATTAGGGTAAAAGATTGGATGCTTCAATCTA-CCCATGATCAGGGTAAAAGATTGGATGG-CT
* * ** * *
15472605 TCAATTTGCCCTTTGATTAGGGTAAAAGATTAGATGGCTACAATTTGCCTCATGATC-GAGGTAA
64 GCAATCTGCCCCATGATTAGGGTAAAAGATTAGATGGCTACAATCTGCCCCATGATCAG-GGTAA
* *
15472669 GAGATTGGATGCTTCAATTTGCCTCATGGTCGGGGTAAGAGATTGGATGATCTTCAATCTGCCCT
128 GAGATTGGATGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATG--CTTCAATCTGCCC-
15472734 CTACT-TAGGG-TAAAAGACTGGATG-CTTCAATCTGCCCCA
190 C-A-TGTAGGGATAAAAGACTGGATGACTTCAATCTGCCCCA
15472773 TGATTAGGGTAAAAGATT
1 TGATTAGGGTAAAAGATT
15472791 AGGTTCTTCA
Statistics
Matches: 224, Mismatches: 19, Indels: 14
0.87 0.07 0.05
Matches are distributed among these distances:
231 32 0.14
232 26 0.12
233 135 0.60
235 24 0.11
236 5 0.02
237 1 0.00
238 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.29
Consensus pattern (229 bp):
TGATTAGGGTAAAAGATTGGATGCTTCAATCTACCCATGATCAGGGTAAAAGATTGGATGGCTGC
AATCTGCCCCATGATTAGGGTAAAAGATTAGATGGCTACAATCTGCCCCATGATCAGGGTAAGAG
ATTGGATGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGCTTCAATCTGCCCCATGTA
GGGATAAAAGACTGGATGACTTCAATCTGCCCCA
Found at i:15478589 original size:31 final size:31
Alignment explanation
Indices: 15478551--15478614 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
15478541 GTGTGCTTCT
15478551 GAACTTAACAATAGTGTTAAAATCAATATGC
1 GAACTTAACAATAGTGTTAAAATCAATATGC
15478582 GAACTTAACAATAGTGTTAAAATCAATATGC
1 GAACTTAACAATAGTGTTAAAATCAATATGC
15478613 GA
1 GA
15478615 GCCGGCTGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.28
Consensus pattern (31 bp):
GAACTTAACAATAGTGTTAAAATCAATATGC
Found at i:15483786 original size:30 final size:30
Alignment explanation
Indices: 15483518--15483839 Score: 236
Period size: 29 Copynumber: 10.9 Consensus size: 30
15483508 AATGGGGTTG
* *
15483518 AAAATGAAATTTTGGAGAA-TTTG-GGGTC
1 AAAATGTAATTTTGGAAAAGTTTGAGGGTC
* * * * *
15483546 AAAATATAATTTTAGAAAAATTTTAGGGGTA
1 AAAATGTAATTTTGGAAAAGTTTGA-GGGTC
**
15483577 AAAATGTAATAATGGAAAAGTTTGA-GGTC
1 AAAATGTAATTTTGGAAAAGTTTGAGGGTC
* * * *
15483606 AAAATGTGACTTTGGGAAAGTTT-AGGGTT
1 AAAATGTAATTTTGGAAAAGTTTGAGGGTC
** ** *
15483635 AAAATGTGGTTTTCAAAAAGTTT-AGGGTA
1 AAAATGTAATTTTGGAAAAGTTTGAGGGTC
*
15483664 AAAATGTAATTTTTGAAAAGTTTG-GGGTC
1 AAAATGTAATTTTGGAAAAGTTTGAGGGTC
* *
15483693 AAAATATAATTTT--AAGATAGTTTGGGGGTC
1 AAAATGTAATTTTGGAA-A-AGTTTGAGGGTC
* * *
15483723 AAAATG-AGATTTTGGAAAATTTTGA-GATA
1 AAAATGTA-ATTTTGGAAAAGTTTGAGGGTC
* *
15483752 AAAATGTAATTTTTGAAAAGTTTGAGGGTT
1 AAAATGTAATTTTGGAAAAGTTTGAGGGTC
* *
15483782 AAAATGTAATTTTAGG-GAAGTTT-AGGGGTT
1 AAAATGTAATTTT-GGAAAAGTTTGA-GGGTC
* *
15483812 AAAATATGATTTTGGAAAAGTTTGAGGG
1 AAAATGTAATTTTGGAAAAGTTTGAGGG
15483840 CCTTTTTATG
Statistics
Matches: 232, Mismatches: 45, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
27 2 0.01
28 17 0.07
29 118 0.51
30 67 0.29
31 26 0.11
32 2 0.01
ACGTcount: A:0.39, C:0.02, G:0.25, T:0.35
Consensus pattern (30 bp):
AAAATGTAATTTTGGAAAAGTTTGAGGGTC
Found at i:15483794 original size:59 final size:59
Alignment explanation
Indices: 15483518--15483839 Score: 253
Period size: 59 Copynumber: 5.5 Consensus size: 59
15483508 AATGGGGTTG
* * * *
15483518 AAAATGAAATTTTGGAGAA-TTTG-GGGTCAAAATATAATTTTAGAAAAATTTTAGGGGTA
1 AAAATGTAATTTTGGAAAAGTTTGAGGGTCAAAATGTAATTTT-GGAAAATTTT-GGGGTA
** * * * * * *
15483577 AAAATGTAATAATGGAAAAGTTTGA-GGTCAAAATGTGACTTTGGGAAAGTTTAGGGTT
1 AAAATGTAATTTTGGAAAAGTTTGAGGGTCAAAATGTAATTTTGGAAAATTTTGGGGTA
** ** * * * *
15483635 AAAATGTGGTTTTCAAAAAGTTT-AGGGTAAAAATGTAATTTTTGAAAAGTTTGGGGTC
1 AAAATGTAATTTTGGAAAAGTTTGAGGGTCAAAATGTAATTTTGGAAAATTTTGGGGTA
* * * *
15483693 AAAATATAATTTT--AAGATAGTTTGGGGGTCAAAATG-AGATTTTGGAAAATTTTGAGATA
1 AAAATGTAATTTTGGAA-A-AGTTTGAGGGTCAAAATGTA-ATTTTGGAAAATTTTGGGGTA
* * * * * *
15483752 AAAATGTAATTTTTGAAAAGTTTGAGGGTTAAAATGTAATTTTAGGGAAGTTTAGGGGTT
1 AAAATGTAATTTTGGAAAAGTTTGAGGGTCAAAATGTAATTTT-GGAAAATTTTGGGGTA
* *
15483812 AAAATATGATTTTGGAAAAGTTTGAGGG
1 AAAATGTAATTTTGGAAAAGTTTGAGGG
15483840 CCTTTTTATG
Statistics
Matches: 205, Mismatches: 47, Indels: 21
0.75 0.17 0.08
Matches are distributed among these distances:
56 2 0.01
57 2 0.01
58 63 0.31
59 81 0.40
60 55 0.27
61 2 0.01
ACGTcount: A:0.39, C:0.02, G:0.25, T:0.35
Consensus pattern (59 bp):
AAAATGTAATTTTGGAAAAGTTTGAGGGTCAAAATGTAATTTTGGAAAATTTTGGGGTA
Found at i:15484522 original size:15 final size:14
Alignment explanation
Indices: 15484495--15484521 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15484485 TCGAAACCAA
15484495 ATTATCCTTTTTTC
1 ATTATCCTTTTTTC
15484509 ATTATCCTTTTTT
1 ATTATCCTTTTTT
15484522 TAAATCTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.19, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTATCCTTTTTTC
Found at i:15485527 original size:29 final size:30
Alignment explanation
Indices: 15485482--15485603 Score: 151
Period size: 30 Copynumber: 4.1 Consensus size: 30
15485472 CCAAAGTATA
*
15485482 AGGGC-TTTATTTGTAA-TTTACTAAAGTTG
1 AGGGCATTTA-TTATAATTTTACTAAAGTTG
15485511 AGGGCATTTATTATAATTTTACTAAAGTTG
1 AGGGCATTTATTATAATTTTACTAAAGTTG
**
15485541 AGGGCATTTACCATAATTTTACTAAAGTTG
1 AGGGCATTTATTATAATTTTACTAAAGTTG
* * * *
15485571 AGGG-AGTTATTGTATTTTTACTAAAGTTT
1 AGGGCATTTATTATAATTTTACTAAAGTTG
15485600 AGGG
1 AGGG
15485604 GTGTGATTGA
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
29 33 0.40
30 49 0.60
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (30 bp):
AGGGCATTTATTATAATTTTACTAAAGTTG
Found at i:15485625 original size:29 final size:30
Alignment explanation
Indices: 15485584--15485657 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 30
15485574 GAGTTATTGT
* * *
15485584 ATTTTTACTAAAGTTTAGGGGTGTGATTGA-A
1 ATTTTT-CCAAAGTTTAGGGGCGTGACT-ACA
*
15485615 A-TTTTCCAAAGTTTGGGGGCGTGACTACA
1 ATTTTTCCAAAGTTTAGGGGCGTGACTACA
15485644 ATTTTTCCAAAGTT
1 ATTTTTCCAAAGTT
15485658 GGCCGAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 1 0.03
29 19 0.51
30 16 0.43
31 1 0.03
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (30 bp):
ATTTTTCCAAAGTTTAGGGGCGTGACTACA
Found at i:15486710 original size:144 final size:142
Alignment explanation
Indices: 15486442--15487006 Score: 668
Period size: 144 Copynumber: 4.0 Consensus size: 142
15486432 TTTTTTTTAA
* * * *
15486442 AAAAGAAAATTTAGATTTTTAAAAATAAAAATATGTTTCTTAGTCATTTTGAAGAAAAAATTTAA
1 AAAA-AAAATTTAGATTTTTAAAAAAAAAAATATGTTTTTTAGTCATTTTAAAGAAAAAGTTTAA
* * *
15486507 ATTTTTAAATAAAGTTTTGATTTTTTAATTATTTCTAAATAAAAGTTTGGATTTTTAAGTAAAGT
65 ATTTTTAAATAAAGTTTTGATTTTTTAAATATTTCGAAATAAAAGTTTGAATTTTTAAGTAAAGT
15486572 AGTGATTTTCATT
130 AGTGATTTTCATT
*
15486585 AAAAAAAATTTAGATTTTAAAAAAAATAAAATATGTTTTTTAGTCA-TTTAAAGAAAAAGTTTAA
1 AAAAAAAATTTAGATTTTTAAAAAAA-AAAATATGTTTTTTAGTCATTTTAAAGAAAAAGTTTAA
* *
15486649 CA-TTCTAAATAAAGTTTTAATTTTTTTTAAATATTTCGAAATAAAAGTTTGAATTTTTAAGTAA
65 -ATTTTTAAATAAAGTTTTGA--TTTTTTAAATATTTCGAAATAAAAGTTTGAATTTTTAAGTAA
* *
15486713 AGTAATAATTTTCATT
127 AGTAGTGATTTTCATT
* * * * *
15486729 AAAAAAATAAAGTTT-GATTTTTAAGAATAAAAATCTG-TTTTTAGTCGTTTTAAAGAAAAAGTA
1 --AAAAA-AAA-TTTAGATTTTTAAAAAAAAAAATATGTTTTTTAGTCATTTTAAAGAAAAAGTT
* * * *
15486792 TAAATTTTTAAATAAAGTTTTGTTTTTTTAACTATTTTGAAATAAAA-TTTTAGATTTTTAAGTA
62 TAAATTTTTAAATAAAGTTTTGATTTTTTAAATATTTCGAAATAAAAGTTTGA-ATTTTTAAGTA
* *
15486856 TAGTAGTGA-TTT-A-A
126 AAGTAGTGATTTTCATT
* * * *
15486870 AAAAAACAAATTAGATTTTTAAAAAAAAAAATCT-ATTTTTAGGCATTTTAAAAGAAAAAGTTT-
1 AAAAAA-AATTTAGATTTTTAAAAAAAAAAATATGTTTTTTAGTCATTTT-AAAGAAAAAGTTTA
* *
15486933 AATTTTTAAACAAAG-TTTGATTTTTTAAATATTTCGAAATAAAAGTTTTG-ATTTTGAAGTAAA
64 AATTTTTAAATAAAGTTTTGATTTTTTAAATATTTCGAAATAAAAG-TTTGAATTTTTAAGTAAA
15486996 GTAGTGATTTT
128 GTAGTGATTTT
15487007 ATTTTTTAAA
Statistics
Matches: 363, Mismatches: 41, Indels: 40
0.82 0.09 0.09
Matches are distributed among these distances:
138 47 0.13
139 55 0.15
140 15 0.04
142 53 0.15
143 30 0.08
144 92 0.25
145 10 0.03
146 44 0.12
147 14 0.04
148 3 0.01
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.43
Consensus pattern (142 bp):
AAAAAAAATTTAGATTTTTAAAAAAAAAAATATGTTTTTTAGTCATTTTAAAGAAAAAGTTTAAA
TTTTTAAATAAAGTTTTGATTTTTTAAATATTTCGAAATAAAAGTTTGAATTTTTAAGTAAAGTA
GTGATTTTCATT
Found at i:15486837 original size:288 final size:284
Alignment explanation
Indices: 15486440--15486998 Score: 754
Period size: 288 Copynumber: 2.0 Consensus size: 284
15486430 TTTTTTTTTT
* *
15486440 AAAAAAGAAAATTTAGATTTTTAAAAATAAAAATATGTTTCTTAGTCATTTTGAAGAAAAAATTT
1 AAAAAAGAAAATTTAGATTTTTAAAAATAAAAATATGTTTCTTAGTCATTTTAAAGAAAAAATAT
* *
15486505 AAATTTTTAAATAAAGTTTTGATTTTTTAATTATTTCTAAATAAAAGTTTGGATTTTTAAGTAAA
66 AAATTTTTAAATAAAGTTTTGATTTTTTAACTATTTCTAAATAAAAGTTTAGATTTTTAAGTAAA
* * * *
15486570 GTAGTGATTTTCATTAAAAAA-AATTTAGATTTTAAAAAAAATAAAATATGTTTTTTAGTCA-TT
131 GTAGTGA-TTT-A-AAAAAAACAAATTAGATTTTAAAAAAAA-AAAATAT-ATTTTTAGGCATTT
*
15486633 T-AAAGAAAAAGTTTAACATTCTAAATAAAGTTTTAATTTTTTTTAAATATTTCGAAATAAAAG-
191 TAAAAGAAAAAGTTTAA-ATTCTAAACAAAG-TTTAA--TTTTTTAAATATTTCGAAATAAAAGT
*
15486696 TTTGAATTTTTAAGTAAAGTAATAATTTTCATTA
252 TTTG-ATTTTGAAGTAAAGTAATAATTTTCATTA
* * * * * *
15486730 AAAAAATAAAGTTT-GATTTTTAAGAATAAAAATCTGTTT-TTAGTCGTTTTAAAGAAAAAGTAT
1 AAAAAAGAAAATTTAGATTTTTAAAAATAAAAATATGTTTCTTAGTCATTTTAAAGAAAAAATAT
* * *
15486793 AAATTTTTAAATAAAGTTTTGTTTTTTTAACTATTT-TGAAATAAAATTTTAGATTTTTAAGTAT
66 AAATTTTTAAATAAAGTTTTGATTTTTTAACTATTTCT-AAATAAAAGTTTAGATTTTTAAGTAA
* *
15486857 AGTAGTGATTTAAAAAAAACAAATTAGATTTTTAAAAAAAAAAATCTATTTTTAGGCATTTTAAA
130 AGTAGTGATTTAAAAAAAACAAATTAGATTTTAAAAAAAAAAAATATATTTTTAGGCATTTTAAA
* * *
15486922 AGAAAAAGTTTAATTTTTAAACAAAGTTTGATTTTTTAAATATTTCGAAATAAAAGTTTTGATTT
195 AGAAAAAGTTTAAATTCTAAACAAAGTTTAATTTTTTAAATATTTCGAAATAAAAGTTTTGATTT
15486987 TGAAGTAAAGTA
260 TGAAGTAAAGTA
15486999 GTGATTTTAT
Statistics
Matches: 240, Mismatches: 24, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
282 40 0.17
283 4 0.02
284 13 0.05
285 25 0.10
286 34 0.14
287 4 0.02
288 85 0.35
289 23 0.10
290 12 0.05
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.43
Consensus pattern (284 bp):
AAAAAAGAAAATTTAGATTTTTAAAAATAAAAATATGTTTCTTAGTCATTTTAAAGAAAAAATAT
AAATTTTTAAATAAAGTTTTGATTTTTTAACTATTTCTAAATAAAAGTTTAGATTTTTAAGTAAA
GTAGTGATTTAAAAAAAACAAATTAGATTTTAAAAAAAAAAAATATATTTTTAGGCATTTTAAAA
GAAAAAGTTTAAATTCTAAACAAAGTTTAATTTTTTAAATATTTCGAAATAAAAGTTTTGATTTT
GAAGTAAAGTAATAATTTTCATTA
Found at i:15486907 original size:20 final size:21
Alignment explanation
Indices: 15486865--15486910 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
15486855 ATAGTAGTGA
15486865 TTTAAAAAAAACAAATTAGATT
1 TTTAAAAAAAACAAATTA-ATT
15486887 TTTAAAAAAAA-AAATCT-ATT
1 TTTAAAAAAAACAAAT-TAATT
15486907 TTTA
1 TTTA
15486911 GGCATTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 7 0.30
21 4 0.17
22 12 0.52
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (21 bp):
TTTAAAAAAAACAAATTAATT
Found at i:15487205 original size:61 final size:61
Alignment explanation
Indices: 15487110--15487231 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
15487100 CAACATGGAA
15487110 TGAGGAAGAGAAAGAGGAAGAGTTTTTTTTAAATGAGGCTAAAAATGAAAGAATAAAATGG
1 TGAGGAAGAGAAAGAGGAAGAGTTTTTTTTAAATGAGGCTAAAAATGAAAGAATAAAATGG
15487171 TGAGGAAGAGAAAGAGGAAGAGTTTTTTTTAAATGAGGCTAAAAATGAAAGAATAAAATGG
1 TGAGGAAGAGAAAGAGGAAGAGTTTTTTTTAAATGAGGCTAAAAATGAAAGAATAAAATGG
15487232 ACTTTCCCTA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.48, C:0.02, G:0.28, T:0.23
Consensus pattern (61 bp):
TGAGGAAGAGAAAGAGGAAGAGTTTTTTTTAAATGAGGCTAAAAATGAAAGAATAAAATGG
Found at i:15500127 original size:736 final size:737
Alignment explanation
Indices: 15496102--15504944 Score: 15869
Period size: 737 Copynumber: 12.0 Consensus size: 737
15496092 GATAGGTAGG
*
15496102 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTACTAATTGTCTCTTTTTTGTA
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTC--TTTTGTA
*
15496167 GCATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTATATTATCTAACTCATTGTTGTT
64 GCATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTT
*
15496232 TGGTTTAAATTCTCGTTATTTTATCTCTTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCA
129 TGGTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCA
* * * *
15496297 CAATTGTCAGCGCAGGGATCCATCTCAGAAAGATCAATGCTAGAAAGAATTTAAAGACGCAGCCA
194 CAATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACA
**
15496362 CAAGTTAGCTTGGAATTGCAACCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAA
259 CAAGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAA
* *
15496427 TTCACGTTGCAAGCACATATGAAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAA
324 TTCACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAA
*
15496492 GATTGTAGATTACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTG
389 GATTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTG
*
15496557 CGTGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCAGAAGAAGTTGGATCTGAGAGGAG
454 CGTGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAG
*
15496622 ATGAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATTTCAAGGACT
519 ATGAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACT
* *
15496687 GAAGATATTAAATCTGCAAATACTTTGAGTTCTTGAAGCTTTATGTTGGAGTTCGGTGAGCTGAT
584 GAAGATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGAT
15496752 CGATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCC
649 CGATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCC
15496817 TCTTTGAAAGCTGATGAATTCTCT
714 TCTTTGAAAGCTGATGAATTCTCT
15496841 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
*
15496906 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGCTGTTTG
66 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
*
15496971 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGTAGAATAAGTTCACA
131 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
15497036 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
196 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
15497101 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
261 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
15497166 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
326 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
* *
15497231 TTGTAGATTACGCCCAGAAATGCGACGACAATCTACAGATTTAAGAAGATCACACCGGATCTGCG
391 TTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
*
15497296 TGACTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
456 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
15497361 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTGA
521 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTGA
*
15497426 AGATATTAAATCTGCAAATACTTTGAGTTCTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATCG
586 AGATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATCG
15497491 ATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCTC
651 ATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCTC
15497556 TTTGAAAGCTGATGAATTCTCT
716 TTTGAAAGCTGATGAATTCTCT
* *
15497578 TGATATCATTAGAAATAACACCTATTTTCTCCCCAAATTTATGTATTAATTATCTCTTTTGTAGC
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
* *
15497643 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTATATTATCTAACTCTTTGTTGTTTG
66 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
15497708 GTTTAAATTCTCGTTATTTTATCT-CTACTATGCATTAATATCGGCGTATGCAGAATAAGTTCAC
131 GTTTAAATTCTCGTTATTTTATCTCCT-CTATGCATTAATATCGGCGTATGCAGAATAAGTTCAC
15497772 AATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACAC
195 AATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACAC
15497837 AAGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAAT
260 AAGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAAT
15497902 TCACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAG
325 TCACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAG
*
15497967 ATTGTAGATTACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGC
390 ATTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGC
*
15498032 GTGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCAGAAGAAGTTGGATCTGAGAGGAGA
455 GTGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGA
*
15498097 TGAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATTTCAAGGACTG
520 TGAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTG
*
15498162 AAGATATTAAATCTGCAAATACTTTGAGTTCTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATC
585 AAGATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATC
15498227 GATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCT
650 GATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCT
*
15498292 CTTTGAAAGTTGATGAATTCTCT
715 CTTTGAAAGCTGATGAATTCTCT
15498315 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
*
15498380 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGCTGTTTG
66 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
*
15498445 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGTAGAATAAGTTCACA
131 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
15498510 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
196 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
15498575 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
261 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
* * *
15498640 CACGTTGCAAGCACTTCTGGAAGTACTAGCGTAGGAATTTCACACGATGTTGCCCCAATTAAAGA
326 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
* *
15498705 TTGTAGATCGCGCCCAGAAATGTGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
391 TTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
15498770 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
456 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
* *
15498835 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAGAATATCAAGGATTGA
521 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTGA
* *
15498900 AGGA-ATTAAATCTGTAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGTGCTGATC
586 A-GATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATC
* *
15498964 GATTAGGCGAGCAACAAATCCTAGTAGCTTAGGGATAATATGCTTCATATTATTTGTTAATTCCT
650 GATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCT
15499029 CTTTGAAAGCTGATGAATTCTCT
715 CTTTGAAAGCTGATGAATTCTCT
15499052 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
*
15499117 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCTTTGTTGTTTG
66 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
* * *
15499182 GTTTAAATTCTCATTATTTTATCTCTTCTATGCATTAATATCAGCGTATGCAGAATAAGTTCACA
131 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
* *
15499247 ATTCTCATCGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
196 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
15499312 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
261 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
15499377 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
326 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
* * * * *
15499442 TTGTAGATTACGCCCAGAAATGCGACGGCAATCTGCAGATTTATGAAGATCACACCAGATCTGCA
391 TTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
* *
15499507 TGAGTGCACAGCTAGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATTTGAGAGGAGAT
456 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
*
15499572 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAAGAAGGAGAAAAATATCAAGGACTGA
521 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTGA
15499637 AGATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATCG
586 AGATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATCG
*
15499702 ATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTT-ATTTCTC
651 ATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCTC
15499766 TTTGAAAGCTGATGAATTCTCT
716 TTTGAAAGCTGATGAATTCTCT
15499788 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
*
15499853 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCTTTGTTGTTTG
66 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
15499918 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
131 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
15499983 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
196 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
*
15500048 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCGCATGGAAATATTTACTTTGTATAAGTAAATT
261 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
15500113 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
326 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
*
15500178 TTGTAGATTACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
391 TTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
15500243 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
456 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
15500308 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTGA
521 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTGA
*
15500373 AGATATTAAATCTGCAAATACTTTGAGTTCTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATCG
586 AGATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATCG
15500438 ATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCTC
651 ATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCTC
15500503 TTTGAAAGCTGATGAATTCTCT
716 TTTGAAAGCTGATGAATTCTCT
*
15500525 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTGTTAATTGTCTCTTTTGTAGC
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
15500590 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
66 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
15500655 GTTTAAATTCTCGTTATTTTATCT-CTACTATGCATTAATATCGGCGTATGCAGAATAAGTTCAC
131 GTTTAAATTCTCGTTATTTTATCTCCT-CTATGCATTAATATCGGCGTATGCAGAATAAGTTCAC
*
15500719 AATTGTCAACGCAAGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACAC
195 AATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACAC
15500784 AAGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAAT
260 AAGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAAT
* *
15500849 TCACGTTGCAAGCACTTCTGGAAGTACTAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAG
325 TCACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAG
* *
15500914 ATTGTAGATCGCGCCCAGAAATGTGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGC
390 ATTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGC
15500979 GTGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGA
455 GTGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGA
*
15501044 TGAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGAGTG
520 TGAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTG
*
15501109 AAGGA-ATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGTGCTGAT
585 AA-GATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGAT
15501173 CGATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCC
649 CGATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCC
15501238 TCTTTGAAAGCTGATGAATTCTCT
714 TCTTTGAAAGCTGATGAATTCTCT
15501262 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
*
15501327 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCTTTGTTGTTTG
66 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
* *
15501392 GTTTAAATTCTCGTTATTTTATCTCTTCTATGCATTAATATCAGCGTATGCAGAATAAGTTCACA
131 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
* * *
15501457 ATTCTCATCGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGCCACA
196 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
*
15501522 AGTTAGCTTGGAATTGCGGCAAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
261 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
15501587 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
326 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
** * * * * *
15501652 TTGTAGATTGCGCCTAGAAATGCGATGACAATCTGCAGATTTATGAAGATCACACCAGATCTGCA
391 TTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
15501717 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
456 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
*
15501782 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAAGAAGGAGAAAAATATCAAGGACTGA
521 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTGA
*
15501847 AGATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTCCGGTGAGCTGATCG
586 AGATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATCG
15501912 ATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCTC
651 ATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCTC
15501977 TTTGAAAGCTGATGAATTCTCT
716 TTTGAAAGCTGATGAATTCTCT
15501999 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
*
15502064 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTATATTATCTAACTCATTGTTGTTTG
66 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
15502129 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
131 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
* *
15502194 ATTGTCAACGTAGGGATCAATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
196 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
15502259 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
261 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
* * *
15502324 CACGTTGCAAGCACTTCTGGAAGTACTAGCGTAGGAATTTCACACGATGTCGCCCCAATTAATGA
326 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
* *
15502389 TTTTAGATCGCGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
391 TTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
15502454 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
456 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
*
15502519 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGAGTGA
521 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTGA
* *
15502584 AGGA-ATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGTGTTGATC
586 A-GATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATC
* *
15502648 GATTAGGCGAGCAACAAATCCTAGTAGCTTAGGGATTATATGCTTCAAATTATTTGTTAATTCCT
650 GATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCT
15502713 CTTTGAAAGCTGATGAATTCTCT
715 CTTTGAAAGCTGATGAATTCTCT
* *
15502736 TGATACCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGCAGC
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
*
15502801 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTATATTATCTAACTCATTGTTGTTTG
66 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
* * *
15502866 GTTTAAATTCTCGTTATTTTATCTCTTCTATGCATTAATATCGGCGTATGAAGAATACGTTCACA
131 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
* * *
15502931 ATTGTCAGCGCAGGGATCCATCTCAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGCCACA
196 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
15502996 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
261 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
* * * *
15503061 CACGTTGCAAGAACATCTGAAAGTACCAGCGTTGGAATTTCACACGATGTCGCCCCAATTAAATA
326 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
* * * * *
15503126 TTGTAGATCGCGCCCAGAAATGCGACGATAATCTACAGGTTTATGAAGATCACACCGGATCTGCG
391 TTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
* * *
15503191 TGGGCGCACAACTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
456 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
* *
15503256 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAAGAAGGAGAAAAATATCAAGGAGTGA
521 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTGA
* *
15503321 AGGA-ATTAAATTTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTCCGGTGAGCTGATC
586 A-GATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATC
* *
15503385 GATTAGGCGAGCAACAAATCCTAGTATCTTAGGGATAATATGCTTCAAATTATTTGTTAATTCCT
650 GATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCT
15503450 CTTTGAAAGCTGATGAATTCTCT
715 CTTTGAAAGCTGATGAATTCTCT
*
15503473 TGATATCATTAGAAATGACACCTATTTTCTTCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
* * *
15503538 ATATTTAGCATGCATGATAAGCATTTCATACGTAGTATTTATATTATCTAACTCATTGTTGTTTG
66 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
* *
15503603 GTTTAAATTCTCGTTATTTTATCTCTTCTATGCATTAATATCAGCGTATGCAGAATAAGTTCACA
131 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
* * *
15503668 ATTGTCATCGTAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGGCACA
196 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
15503733 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
261 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
* * *
15503798 CACGTTGCAAGCACATCTTGAAGTACCAGCGTAGAAATTTCACACGATGTCGCCCCAATTAAATA
326 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
* ** * * * *
15503863 TTGTAGATCACGCCTAGAAATGCGATAACAATCTACATATTTATGAAGATCACACCAGATCTGCG
391 TTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
15503928 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
456 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
* *
15503993 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAAGAAGGAGAAAAATATCAAGGACTAA
521 GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTGA
15504058 AGGA-ATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATC
586 A-GATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATC
* * *
15504122 GATTAGGCGAGCAACAAATCCTTGTAGCTTAGGGATATTATGCTTCAAATTATTTGTTAATTCCT
650 GATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCT
15504187 CTTTGAAAGCTGATGAATTCTCT
715 CTTTGAAAGCTGATGAATTCTCT
*
15504210 TG--AT-A--AGAAATGACACCTATTTTCTCACCAAATTTATGTATTAATTGTCTCTTTTGTAGC
1 TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
* *
15504270 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTATATTATCTAACTCATTGTTGTTAG
66 ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
* * * * *
15504335 GTTTAAATTCTTGTCATTTTATCTCTTCTATGCATTAATATCAGCGTATTCAGAATAAGTTCACA
131 GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
* * *
15504400 ATTGTCAGCGCAGGGATCCATCTTAGAAAGATCAATGATAGAAAGAATTTAAAGATGCAGCCACA
196 ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
*
15504465 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACGTGGAAATATTTACTTTGTATAAGTAAATT
261 AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
* * *
15504530 CACATTACAAGCACATCTGGAAGTACCAACGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
326 CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
* * * * *
15504595 TTGTAGATCGCGCCCAGAAATGCGACAACAATCTGCAAATTTATGAAGATCACATCGGATCTGCG
391 TTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
* *
15504660 TGAGTGCACAACTGGATTTCAACAAACTTTGACAGTTGCACGAGAAGTTGGATCTGAGAGG-GTA
456 TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAG-A
* *
15504724 TGAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAAGAAGGAGAAAAATATCAAGGAATG
520 TGAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTG
* * *
15504789 ACGAAATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTCCGGTGAGCTGATC
585 AAGATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATC
* *
15504854 GATTAGGCGAGCAACAAATCCTAGTAGCTTAGGGATAATATGCTTCAAATTATTTTTTAATTCCT
650 GATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCT
*
15504919 CTTTGAAAACTGATGAATTCTCT
715 CTTTGAAAGCTGATGAATTCTCT
15504942 TGA
1 TGA
15504945 CTTTTGATTG
Statistics
Matches: 7833, Mismatches: 258, Indels: 32
0.96 0.03 0.00
Matches are distributed among these distances:
731 3 0.00
732 688 0.09
734 1 0.00
735 2 0.00
736 729 0.09
737 6346 0.81
738 9 0.00
739 55 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (737 bp):
TGATATCATTAGAAATGACACCTATTTTCTCCCCAAATTTATGTATTAATTGTCTCTTTTGTAGC
ATATTTAGCATGCATGATAGGCATTTCATACTTAGTATTTAAATTATCTAACTCATTGTTGTTTG
GTTTAAATTCTCGTTATTTTATCTCCTCTATGCATTAATATCGGCGTATGCAGAATAAGTTCACA
ATTGTCAACGCAGGGATCCATCTTAGAAAGATCAATGCTAGAAAGAATTTAAAGATGCAGACACA
AGTTAGCTTGGAATTGCGGCCAGAGATGTCACCACATGGAAATATTTACTTTGTATAAGTAAATT
CACGTTGCAAGCACATCTGGAAGTACCAGCGTAGGAATTTCACACGATGTCGCCCCAATTAAAGA
TTGTAGATCACGCCCAGAAATGCGACGACAATCTGCAGATTTAAGAAGATCACACCGGATCTGCG
TGAGTGCACAGCTGGATTTCAACAAACTTTGACAGTTGCACAAGAAGTTGGATCTGAGAGGAGAT
GAGATCTACAATTCTTGAAGCCTATAAATAGAGGAAAGAGGAAGGAGAAAAATATCAAGGACTGA
AGATATTAAATCTGCAAATACTTTGAGTTTTTGAAGCTTTATGCTGGAGTTCGGTGAGCTGATCG
ATTAGGCGAGCAACAAATCCTAGTAGCTTAAGGATAATATGCTTCAAATTATTTGTTAATTCCTC
TTTGAAAGCTGATGAATTCTCT
Found at i:15510535 original size:21 final size:21
Alignment explanation
Indices: 15510511--15510553 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
15510501 AAAAGAAATG
15510511 AACAAGAATATTTTACTCTGT
1 AACAAGAATATTTTACTCTGT
15510532 AACAAGAATATTTTACTCTGT
1 AACAAGAATATTTTACTCTGT
15510553 A
1 A
15510554 TTTATAGACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (21 bp):
AACAAGAATATTTTACTCTGT
Found at i:15510913 original size:23 final size:23
Alignment explanation
Indices: 15510881--15510936 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
15510871 GTAATTTAAA
* *
15510881 ACAAATATAATGGATGGAGAGTT
1 ACAAAAATAATGGATGAAGAGTT
* *
15510904 ACAAAAATAATGGCTGAATAGTT
1 ACAAAAATAATGGATGAAGAGTT
15510927 ACAAAAATAA
1 ACAAAAATAA
15510937 AATTAAAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.52, C:0.07, G:0.18, T:0.23
Consensus pattern (23 bp):
ACAAAAATAATGGATGAAGAGTT
Found at i:15513392 original size:30 final size:30
Alignment explanation
Indices: 15513334--15513392 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
15513324 TTGACTGTTT
* * * *
15513334 GATCACTTTAACCCTTTATCTTTTTTTTTG
1 GATCACTTTAACCCCTAATATTTATTTTTG
15513364 GATCACTTTAACCCCTAATATTTATTTTT
1 GATCACTTTAACCCCTAATATTTATTTTT
15513393 ATCAAATTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.22, C:0.20, G:0.05, T:0.53
Consensus pattern (30 bp):
GATCACTTTAACCCCTAATATTTATTTTTG
Found at i:15515671 original size:20 final size:19
Alignment explanation
Indices: 15515635--15515676 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
15515625 AACAATGATG
* *
15515635 ATTTTAAAATCACTTTAATA
1 ATTTTAAAATAAATTTAA-A
15515655 ATTTTAAAATAAATTTAAA
1 ATTTTAAAATAAATTTAAA
15515674 ATT
1 ATT
15515677 ATTTGTTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTTAAAATAAATTTAAA
Found at i:15515923 original size:10 final size:11
Alignment explanation
Indices: 15515910--15515960 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
15515900 GCATTATATC
15515910 TTAAAATAT-A
1 TTAAAATATAA
15515920 TTAAAATATCTAA
1 TTAAAATA--TAA
* *
15515933 ATAAAATATCA
1 TTAAAATATAA
15515944 TTAAAATAATAA
1 TTAAAAT-ATAA
15515956 TTAAA
1 TTAAA
15515961 TAATCAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
10 8 0.24
11 8 0.24
12 9 0.27
13 8 0.24
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (11 bp):
TTAAAATATAA
Found at i:15515960 original size:23 final size:23
Alignment explanation
Indices: 15515910--15515960 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
15515900 GCATTATATC
*
15515910 TTAAAATATATTAAAATATCTAA
1 TTAAAATATATTAAAATATATAA
*
15515933 ATAAAATATCATTAAAATA-ATAA
1 TTAAAATAT-ATTAAAATATATAA
15515956 TTAAA
1 TTAAA
15515961 TAATCAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (23 bp):
TTAAAATATATTAAAATATATAA
Found at i:15516200 original size:30 final size:30
Alignment explanation
Indices: 15516145--15516201 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
15516135 TTAAATTTTA
*
15516145 TATTTTCATTTACGTCCTTTCCACTTTGGT
1 TATTTTCATTTACGTCCTTTACACTTTGGT
15516175 TATTTTCACTTTTA-GTCC-TTACACTTT
1 TATTTTCA--TTTACGTCCTTTACACTTT
15516202 TTGAATTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 16 0.67
31 4 0.17
32 4 0.17
ACGTcount: A:0.16, C:0.23, G:0.07, T:0.54
Consensus pattern (30 bp):
TATTTTCATTTACGTCCTTTACACTTTGGT
Found at i:15516257 original size:29 final size:27
Alignment explanation
Indices: 15516200--15516259 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
15516190 TCCTTACACT
* *
15516200 TTTTGAATTTACACTTTAACTCTCAAC
1 TTTTGAATTTACACTTTAACCCACAAC
* *
15516227 TTTTGAATATTCACACTTTGACCCACCAC
1 TTTTGAAT-TT-ACACTTTAACCCACAAC
15516256 TTTT
1 TTTT
15516260 AACTTTTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 8 0.30
28 2 0.07
29 17 0.63
ACGTcount: A:0.27, C:0.25, G:0.05, T:0.43
Consensus pattern (27 bp):
TTTTGAATTTACACTTTAACCCACAAC
Found at i:15517497 original size:19 final size:20
Alignment explanation
Indices: 15517466--15517514 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
15517456 ATTTAAAATG
*
15517466 AAAAGATAT-AAAAATT-ATT
1 AAAAAATATAAAAAATTGA-T
15517485 AAAAAA-ATAAAAAATTGAT
1 AAAAAATATAAAAAATTGAT
15517504 AAAAAATATAA
1 AAAAAATATAA
15517515 CACCCCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 2 0.08
19 19 0.73
20 5 0.19
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (20 bp):
AAAAAATATAAAAAATTGAT
Found at i:15518077 original size:12 final size:12
Alignment explanation
Indices: 15518031--15518069 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
15518021 ATCGACCAAT
15518031 AAAACAAAAACCA
1 AAAAC-AAAACCA
* *
15518044 AAAACCAACCCA
1 AAAACAAAACCA
15518056 AAAACAAAACCA
1 AAAACAAAACCA
15518068 AA
1 AA
15518070 TACGAAACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.72, C:0.28, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAACAAAACCA
Found at i:15518355 original size:20 final size:20
Alignment explanation
Indices: 15518328--15518397 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
15518318 AACGTGTCAT
15518328 ATCATATCATAACATAACGA
1 ATCATATCATAACATAACGA
* * *
15518348 ATCTTATCATATCATAAGGA
1 ATCATATCATAACATAACGA
* * *
15518368 ATCATATCATATCACAATGA
1 ATCATATCATAACATAACGA
*
15518388 ATTATATCAT
1 ATCATATCAT
15518398 GTCCTACCCC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (20 bp):
ATCATATCATAACATAACGA
Found at i:15519082 original size:17 final size:17
Alignment explanation
Indices: 15519062--15519104 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
15519052 TACAAAATCA
*
15519062 CACAGGGCCGTGTGCCC
1 CACACGGCCGTGTGCCC
**
15519079 CACACGATCGTGTGCCC
1 CACACGGCCGTGTGCCC
*
15519096 CACATGGCC
1 CACACGGCC
15519105 TACCCATACG
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.42, G:0.28, T:0.14
Consensus pattern (17 bp):
CACACGGCCGTGTGCCC
Found at i:15522345 original size:17 final size:18
Alignment explanation
Indices: 15522315--15522349 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
15522305 GCCCATATTA
*
15522315 TTTTTTATATATATAATT
1 TTTTTTATAAATATAATT
15522333 TTTTTTA-AAATATAATT
1 TTTTTTATAAATATAATT
15522350 CATAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTTATAAATATAATT
Found at i:15525390 original size:28 final size:28
Alignment explanation
Indices: 15525350--15525405 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
15525340 AATAAACAGA
15525350 AAGAAATTAAAAGAACATAGTATGTAGC
1 AAGAAATTAAAAGAACATAGTATGTAGC
15525378 AAGAAATTAAAAGAACATAGTATGTAGC
1 AAGAAATTAAAAGAACATAGTATGTAGC
15525406 TGTCCTAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.54, C:0.07, G:0.18, T:0.21
Consensus pattern (28 bp):
AAGAAATTAAAAGAACATAGTATGTAGC
Found at i:15529671 original size:28 final size:28
Alignment explanation
Indices: 15529631--15529686 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
15529621 GATATCTAAT
15529631 TTACTCCTTGTTGACCCAAAGGTCATGC
1 TTACTCCTTGTTGACCCAAAGGTCATGC
*
15529659 TTACTCCTTGTTGACCCAAAGGTTATGC
1 TTACTCCTTGTTGACCCAAAGGTCATGC
15529687 CTTTTACTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (28 bp):
TTACTCCTTGTTGACCCAAAGGTCATGC
Found at i:15530990 original size:148 final size:148
Alignment explanation
Indices: 15530666--15531311 Score: 881
Period size: 148 Copynumber: 4.4 Consensus size: 148
15530656 CTTGACCGAA
* * *
15530666 TACTTCAAAATCAAAACTTTTTTTTCGAAATAGTTAAAAAAATCAAAAGTTTGTTTAAAAATTTA
1 TACTTAAAAATCAAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAAATTTGTTTAAAAATTTA
* *
15530731 AACATTTTCTTTAAAATCACTAAAAAAACATATTTTTATTTTTTAAAAAAATCTAAATTTTCTTT
66 AACTTTTTCTTTAAAATGACT-AAAAAACATATTTTTA-TTTTT--AAAAATCTAAATTTTCTTT
* *
15530796 TTTTTAATGAAAATCATTATTT
127 TTTTTAAAGAAAATCACTATTT
* * * *
15530818 TTCTTAAAAATCAAAACTTTTATTTCGAAATAGTTAAAAAAGTTAAAAATTTATTTAAAAATTTA
1 TACTTAAAAATCAAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAAATTTGTTTAAAAATTTA
* * * *
15530883 AA-TTTTTCTTTAAAATGACTAAAAAACAAATTTTTATTTTTTTAAAATGTAAACTTTCTTTTTT
66 AACTTTTTCTTTAAAATGACTAAAAAACATATTTTTA-TTTTTAAAAATCTAAATTTTCTTTTTT
* * *
15530947 TTAATGGAAATCACTACTT
130 TTAAAGAAAATCACTATTT
* * *
15530966 TATTTAAAAATCCAAACTTTTATTTCGAAATAGTTAAAAAAAATCAAAACTTTGTTTAAAAATTT
1 TACTTAAAAATCAAAACTTTTATTTCGAAATAGTT-AAAAAAATCAAAAATTTGTTTAAAAATTT
* * *
15531031 AAGCTTTTTCTTTAAAATGATTAAAAAA-ATATTTTTATTTTTAAAAATCTAAATTTTCTCTTTT
65 AAACTTTTTCTTTAAAATGACTAAAAAACATATTTTTATTTTTAAAAATCTAAATTTTCTTTTTT
15531095 TTAAAGAAAATCACTATTT
130 TTAAAGAAAATCACTATTT
* *
15531114 TACTTAAAAATCCAAACTTTTATTTCGAAATAGTTAAAAAAAATCAAAACTTTGTTTAAAAATTT
1 TACTTAAAAATCAAAACTTTTATTTCGAAATAGTT-AAAAAAATCAAAAATTTGTTTAAAAATTT
* * * * *
15531179 AAACTTTTTCTTTAAAATAACTAAAAAACATATTTTTATTTTT--AAATATAAA-GTT-TATCTT
65 AAACTTTTTCTTTAAAATGACTAAAAAACATATTTTTATTTTTAAAAATCTAAATTTTCTTTTTT
15531240 TTAAAGAAAATCACTATTT
130 TTAAAGAAAATCACTATTT
* *
15531259 TACTTAAAAATCAAAACTTTTATTTCGAAATTATTTTAAAAAATCAAAAATTT
1 TACTTAAAAATCAAAACTTTTATTTCGAAA-TAGTTAAAAAAATCAAAAATTT
15531312 TCCCAAAATC
Statistics
Matches: 445, Mismatches: 45, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
145 67 0.15
146 6 0.01
147 8 0.02
148 195 0.44
149 49 0.11
150 44 0.10
151 16 0.04
152 60 0.13
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (148 bp):
TACTTAAAAATCAAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAAATTTGTTTAAAAATTTA
AACTTTTTCTTTAAAATGACTAAAAAACATATTTTTATTTTTAAAAATCTAAATTTTCTTTTTTT
TAAAGAAAATCACTATTT
Found at i:15531197 original size:52 final size:53
Alignment explanation
Indices: 15530962--15531206 Score: 162
Period size: 52 Copynumber: 4.9 Consensus size: 53
15530952 GGAAATCACT
* **
15530962 ACTTTATTTAAAAATCCAAACTTTTAT-TTCGAAATAGTTAAAAAAAATCAAA
1 ACTTTATTTAAAAATCTAAACTTTTATCTTTAAAATAGTTAAAAAAAATCAAA
* * *
15531014 ACTTTGTTTAAAAATTTAAGCTTTT-TCTTTAAAAT-GATT-AAAAAAAT---A
1 ACTTTATTTAAAAATCTAAACTTTTATCTTTAAAATAG-TTAAAAAAAATCAAA
** * * **
15531062 TTTTTATTTTTAAAAATCTAAA-TTTTCTCTTT----T--TTAAAGAAAATCACT
1 ACTTTA--TTTAAAAATCTAAACTTTTATCTTTAAAATAGTTAAAAAAAATCAAA
* * * **
15531110 ATTTTACTTAAAAATCCAAACTTTTAT-TTCGAAATAGTTAAAAAAAATCAAA
1 ACTTTATTTAAAAATCTAAACTTTTATCTTTAAAATAGTTAAAAAAAATCAAA
* * **
15531162 ACTTTGTTTAAAAATTTAAACTTTT-TCTTTAAAATAACTAAAAAA
1 ACTTTATTTAAAAATCTAAACTTTTATCTTTAAAATAGTTAAAAAA
15531207 CATATTTTTA
Statistics
Matches: 146, Mismatches: 30, Indels: 34
0.70 0.14 0.16
Matches are distributed among these distances:
44 2 0.01
45 7 0.05
46 15 0.10
47 5 0.03
48 9 0.06
49 4 0.03
50 18 0.12
51 11 0.08
52 75 0.51
ACGTcount: A:0.45, C:0.10, G:0.04, T:0.41
Consensus pattern (53 bp):
ACTTTATTTAAAAATCTAAACTTTTATCTTTAAAATAGTTAAAAAAAATCAAA
Found at i:15534038 original size:30 final size:31
Alignment explanation
Indices: 15534004--15534061 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
15533994 GCCTTTTTAG
15534004 TTTCCTTC-AAAATTTTTTACTC-CTTCCTAC
1 TTTCCTTCTAAAA-TTTTTACTCTCTTCCTAC
15534034 TTTCCTTCTAAAATTTTTACTCTCTTCC
1 TTTCCTTCTAAAATTTTTACTCTCTTCC
15534062 CATCTCACTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.19, C:0.29, G:0.00, T:0.52
Consensus pattern (31 bp):
TTTCCTTCTAAAATTTTTACTCTCTTCCTAC
Found at i:15534332 original size:17 final size:17
Alignment explanation
Indices: 15534298--15534339 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
15534288 TAAATTAAAT
*
15534298 TTTACATT-TTGTACTA
1 TTTACATTATTGAACTA
*
15534314 TTTACATTATTGAATTA
1 TTTACATTATTGAACTA
15534331 TTTA-ATTAT
1 TTTACATTAT
15534340 ATTGAATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (17 bp):
TTTACATTATTGAACTA
Found at i:15564127 original size:35 final size:35
Alignment explanation
Indices: 15564069--15564161 Score: 116
Period size: 35 Copynumber: 2.7 Consensus size: 35
15564059 GATAATAGGC
* * *
15564069 ATGACCTTTGGGTTAACAAGGAGAATA-TGAGCATA
1 ATGACCGTTGGGTCAACAGGGAGAA-AGTGAGCATA
*
15564104 ATGATCGTTGGGTCAACAGGGAGAAAGTGAGCATA
1 ATGACCGTTGGGTCAACAGGGAGAAAGTGAGCATA
* *
15564139 ATGACCTTTGGGTCAAGAGGGAG
1 ATGACCGTTGGGTCAACAGGGAG
15564162 TAAACGAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
34 1 0.02
35 49 0.98
ACGTcount: A:0.33, C:0.12, G:0.32, T:0.23
Consensus pattern (35 bp):
ATGACCGTTGGGTCAACAGGGAGAAAGTGAGCATA
Found at i:15571399 original size:35 final size:35
Alignment explanation
Indices: 15571348--15571434 Score: 122
Period size: 35 Copynumber: 2.5 Consensus size: 35
15571338 AAGCACGACC
* *
15571348 TTTGTGTCAACAGGGAGAAAATGAGCATAATGGACA
1 TTTGGGTCAACAGGGAGAAAATGAACATAAT-GACA
*
15571384 -TTGGGTCAACAGGGAGAAAGTGAACATAATGACA
1 TTTGGGTCAACAGGGAGAAAATGAACATAATGACA
*
15571418 TTTGGGTCAAAAGGGAG
1 TTTGGGTCAACAGGGAG
15571435 TAAACAAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
34 4 0.09
35 42 0.91
ACGTcount: A:0.38, C:0.10, G:0.31, T:0.21
Consensus pattern (35 bp):
TTTGGGTCAACAGGGAGAAAATGAACATAATGACA
Found at i:15583292 original size:22 final size:20
Alignment explanation
Indices: 15583267--15583324 Score: 55
Period size: 22 Copynumber: 2.8 Consensus size: 20
15583257 ATTATGTGTC
15583267 AATAACATAAAAAAATTGTTAA
1 AATAACATAAAAAAATTG--AA
* * *
15583289 AATATCATCAAATAATTGAA
1 AATAACATAAAAAAATTGAA
15583309 AATAGACA-AAAAAAAT
1 AATA-ACATAAAAAAAT
15583325 AATGTAGTAG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
20 12 0.41
21 2 0.07
22 15 0.52
ACGTcount: A:0.64, C:0.07, G:0.05, T:0.24
Consensus pattern (20 bp):
AATAACATAAAAAAATTGAA
Found at i:15584296 original size:27 final size:27
Alignment explanation
Indices: 15584233--15584296 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
15584223 TGTAGAGGAT
* * *
15584233 ATCTGACAAGTGGCACCTATGGTGCCC
1 ATCTGATAGGTGGCACCAATGGTGCCC
* *
15584260 ATCTGGTAGGTGGCACCAATGTTG-CC
1 ATCTGATAGGTGGCACCAATGGTGCCC
15584286 ATACTGATAGG
1 AT-CTGATAGG
15584297 CAGCACTAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (27 bp):
ATCTGATAGGTGGCACCAATGGTGCCC
Found at i:15586640 original size:3 final size:3
Alignment explanation
Indices: 15586632--15586674 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
15586622 TTTCTATCGT
15586632 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
15586675 CCATAACTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:15590083 original size:19 final size:19
Alignment explanation
Indices: 15590040--15590082 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
15590030 AAATAGTTAA
*
15590040 AAAAATCAAAACTTTGTTT
1 AAAAATCAAAACTTTCTTT
*
15590059 AAAAATCTAAACTTTACTTT
1 AAAAATCAAAACTTT-CTTT
15590079 AAAA
1 AAAA
15590083 TGACTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAATCAAAACTTTCTTT
Found at i:15590679 original size:30 final size:30
Alignment explanation
Indices: 15590610--15590683 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
15590600 CAATTATTAT
* * *
15590610 TATATTATACTCGTATTTTAATTTTGGATA
1 TATACTATACCCGTATTTTAATTTCGGATA
* *
15590640 TATATTATACCCGTATTTTAATTTCGGGTCA
1 TATACTATACCCGTATTTTAATTTCGGAT-A
15590671 -ATACTATACCCGT
1 TATACTATACCCGT
15590684 GAAAAAGAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 38 0.97
31 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.11, T:0.46
Consensus pattern (30 bp):
TATACTATACCCGTATTTTAATTTCGGATA
Found at i:15594980 original size:17 final size:17
Alignment explanation
Indices: 15594960--15595010 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 17
15594950 ATGAAACCCA
15594960 ATTTTAAATTTAAATTT
1 ATTTTAAATTTAAATTT
* *
15594977 ATTTTGAGTTTAAATTT
1 ATTTTAAATTTAAATTT
15594994 ATTTTAAA-TTAAATTT
1 ATTTTAAATTTAAATTT
15595010 A
1 A
15595011 AATTTTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
16 9 0.30
17 21 0.70
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:15595019 original size:7 final size:6
Alignment explanation
Indices: 15594962--15595015 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
15594952 GAAACCCAAT
* * * *
15594962 TTTAAA TTTAAA TTT-AT TTTGAG TTTAAA TTT-AT TTTAAA -TTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
15595007 TTTAAA TTT
1 TTTAAA TTT
15595016 TAAAAGTTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
5 13 0.33
6 26 0.67
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (6 bp):
TTTAAA
Found at i:15596938 original size:29 final size:28
Alignment explanation
Indices: 15596896--15597196 Score: 250
Period size: 29 Copynumber: 10.4 Consensus size: 28
15596886 TTTGTCCTCT
* *
15596896 AAACTTTTCTAAAATTACATTTTTACCCC
1 AAAC-TTTCAAAAATCACATTTTTACCCC
15596925 TTAAACTTTCAAAAATCACATTTTTACCCC
1 --AAACTTTCAAAAATCACATTTTTACCCC
* *
15596955 AAACTTCTCAAAAATTACA-TTTTCCCCC
1 AAACTT-TCAAAAATCACATTTTTACCCC
* * *
15596983 AAGCTTTCAAAAATTATATTTTT-CCCC
1 AAACTTTCAAAAATCACATTTTTACCCC
*
15597010 AAACTTCCAAAAAATCACATTTTTACCCTC
1 AAACTTTC-AAAAATCACATTTTTACCC-C
* **
15597040 AAACTTCCAAAAATCACATTTTT-CCTT
1 AAACTTTCAAAAATCACATTTTTACCCC
* * * * *
15597067 GATCTTCCAAAAATTACATTTTTATCCCT
1 AAACTTTCAAAAATCACATTTTTA-CCCC
*
15597096 AAA-TTTCCAAAAATCACATTTTTGCCCC
1 AAACTTT-CAAAAATCACATTTTTACCCC
*
15597124 AAACTTTTCAAAAATCACATTTTCACCCC
1 AAAC-TTTCAAAAATCACATTTTTACCCC
* * * * *
15597153 GAACTCTCCCAAAATAATATTTTTACCCC
1 AAACT-TTCAAAAATCACATTTTTACCCC
15597182 TAAAACTTTTCAAAA
1 --AAAC-TTTCAAAA
15597197 TAATGTTTTA
Statistics
Matches: 223, Mismatches: 33, Indels: 28
0.79 0.12 0.10
Matches are distributed among these distances:
27 41 0.18
28 47 0.21
29 88 0.39
30 34 0.15
31 12 0.05
32 1 0.00
ACGTcount: A:0.37, C:0.27, G:0.01, T:0.35
Consensus pattern (28 bp):
AAACTTTCAAAAATCACATTTTTACCCC
Found at i:15597034 original size:84 final size:83
Alignment explanation
Indices: 15596901--15597152 Score: 299
Period size: 84 Copynumber: 3.0 Consensus size: 83
15596891 CCTCTAAACT
* *
15596901 TTTCTAAAATTACATTTTTACCCCTTAAACTTTCAAAAATCACATTTTTACCCCAAACTTCTCAA
1 TTTCAAAAATTACATTTTT-CCCC--AAACTTCCAAAAATCACATTTTTACCCCAAACTTCTCAA
*
15596966 AAATTACATTTTCCCCCAAGC
63 AAATCACATTTTCCCCCAAGC
*
15596987 TTTCAAAAATTATATTTTTCCCCAAACTTCCAAAAAATCACATTTTTACCCTCAAACTTC-CAAA
1 TTTCAAAAATTACATTTTTCCCCAAACTTCC-AAAAATCACATTTTTACCC-CAAACTTCTCAAA
* *** *
15597051 AATCACATTTTTCCTTGATC
64 AATCACATTTTCCCCCAAGC
* * * * *
15597071 TTCCAAAAATTACATTTTTATCCCTAAATTTCCAAAAATCACATTTTTGCCCCAAACTTTTCAAA
1 TTTCAAAAATTACA-TTTT-TCCCCAAACTTCCAAAAATCACATTTTTACCCCAAACTTCTCAAA
15597136 AATCACATTTTCACCCC
64 AATCACATTTTC-CCCC
15597153 GAACTCTCCC
Statistics
Matches: 142, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
83 7 0.05
84 56 0.39
85 49 0.35
86 30 0.21
ACGTcount: A:0.35, C:0.27, G:0.01, T:0.36
Consensus pattern (83 bp):
TTTCAAAAATTACATTTTTCCCCAAACTTCCAAAAATCACATTTTTACCCCAAACTTCTCAAAAA
TCACATTTTCCCCCAAGC
Found at i:15597105 original size:56 final size:55
Alignment explanation
Indices: 15596906--15597152 Score: 248
Period size: 56 Copynumber: 4.3 Consensus size: 55
15596896 AAACTTTTCT
15596906 AAAATTACATTTTTACCCCTTAAACTTTCAAAAATCACATTTTTACCCCAAACTTCTCA
1 AAAATTACATTTTTACCCC-TAAA-TTTCAAAAATCACATTTTT-CCCCAAACTTC-CA
* * * *
15596965 AAAATTACA-TTTT-CCCCCAAGCTTTCAAAAATTATATTTTTCCCCAAACTTCCAA
1 AAAATTACATTTTTACCCCTAA-ATTTCAAAAATCACATTTTTCCCCAAACTTCC-A
* * *** *
15597020 AAAATCACATTTTTA-CCCTCAAACTTCCAAAAATCACATTTTTCCTTGATCTTCCA
1 AAAATTACATTTTTACCCCT-AAA-TTTCAAAAATCACATTTTTCCCCAAACTTCCA
* *
15597076 AAAATTACATTTTTATCCCTAAATTTCCAAAAATCACATTTTTGCCCCAAACTTTTCA
1 AAAATTACATTTTTACCCCTAAATTT-CAAAAATCACATTTTT-CCCCAAAC-TTCCA
* *
15597134 AAAATCACATTTTCACCCC
1 AAAATTACATTTTTACCCC
15597153 GAACTCTCCC
Statistics
Matches: 154, Mismatches: 24, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
54 1 0.01
55 22 0.14
56 60 0.39
57 38 0.25
58 24 0.16
59 9 0.06
ACGTcount: A:0.36, C:0.28, G:0.01, T:0.35
Consensus pattern (55 bp):
AAAATTACATTTTTACCCCTAAATTTCAAAAATCACATTTTTCCCCAAACTTCCA
Found at i:15609191 original size:39 final size:38
Alignment explanation
Indices: 15609131--15609820 Score: 150
Period size: 39 Copynumber: 17.7 Consensus size: 38
15609121 CCATTAGCAA
* * *
15609131 ATCTCTTATCCCAATCATGGGGTAGATTGCAGCCATTCG
1 ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATTCG
* * * **
15609170 ATCTCTTACCTCGAGCCTGGGGCAGATCAT-CA-TCAGTAA
1 ATCTCTTACC-CGAGCATGGGGCAGAT--TGCAGCCATTCG
* *
15609209 ATCTCTTACCCTGATCATGAGGCAGATTGCAGCCATTCG
1 ATCTCTTACCC-GAGCATGGGGCAGATTGCAGCCATTCG
* * * *
15609248 ATCTCTTACCCCGAGCTTGGGGTA-AAT-CA-TCA-TCAG
1 ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATTC-G
* * * **
15609284 CAAATCTCTTACCCCAATCATGGGGTAGATTATAGCCATTCG
1 ---ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATTCG
* * **
15609326 ATCTTTTACCCCGAGCCTGAAGCAGA-T-CA-CCA-TCAG
1 ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATTC-G
* * * *
15609362 CCAATCTCTTACCCCGATCATGGGGCAAATTGCATCCATTTG
1 ---ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATTCG
* * *
15609404 ATCTCTTACCCCGAGCCTGGGGCAGA-T-CA-TCATTAGCAA
1 ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATT--C-G
* * * *
15609443 ATCTCTTACCCCGATCATGAGGCATATTGCAACCATTCG
1 ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATTCG
* * ** ** * ** *
15609482 ATCTTTTACCCCGAGCCTAAGGCAGATCACTA-TCAGCCA
1 ATCTCTTA-CCCGAGCATGGGGCAGATTGC-AGCCATTCG
* * * **
15609521 ATCTCTTACCCCGATCATAGGGCAGATTACAGCCATTTA
1 ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATTCG
* * * * * **
15609560 ATCCCTTACCCCGAGCCTAGGGCAGATCAT-CA-TCAGTAA
1 ATCTCTTA-CCCGAGCATGGGGCAGAT--TGCAGCCATTCG
** * * *
15609599 ATCTCTTACCCCGATTATGGGGCAAATTACAGTCATTCG
1 ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATTCG
* * * *
15609638 ATCTATTACCCTGAGTC-TGGGGCAGA-T-CA-TCATCAACAA
1 ATCTCTTACCC-GAG-CATGGGGCAGATTGCAGCCAT--TC-G
* *
15609677 ATCTCTTACCCCGATCATGGGACAGATTGCAGCCATTCG
1 ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATTCG
* * *
15609716 ATCTTTTACCCCGAGCTTGGGACAGA-T-CA-CCA-TCAG
1 ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATTC-G
* * *
15609752 CCAATCTCTTACCCCGATCATAGGGTAGATTGCAGCCATTCG
1 ---ATCTCTTA-CCCGAGCATGGGGCAGATTGCAGCCATTCG
* * *
15609794 ATCTGTTACCTCGAGCCTGGGGTAGAT
1 ATCTCTTACC-CGAGCATGGGGCAGAT
15609821 CATCATCAGC
Statistics
Matches: 483, Mismatches: 114, Indels: 108
0.69 0.16 0.15
Matches are distributed among these distances:
35 6 0.01
36 19 0.04
37 11 0.02
38 21 0.04
39 373 0.77
40 19 0.04
41 11 0.02
42 18 0.04
43 5 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (38 bp):
ATCTCTTACCCGAGCATGGGGCAGATTGCAGCCATTCG
Found at i:15609872 original size:78 final size:78
Alignment explanation
Indices: 15609086--15609860 Score: 976
Period size: 78 Copynumber: 9.9 Consensus size: 78
15609076 CAGATTGAAG
* * * * *
15609086 ATTCAATCTCTTACCCCGAGCCTAGGGGCAGATCACCATTAGCAAATCTCTTATCCCAATCATGG
1 ATTCGATCTCTTACCCCGAGCCT-GGGGCAGATCATCATCAGCAAATCTCTTACCCCGATCATGG
*
15609151 GGTAGATTGCAGCC
65 GGCAGATTGCAGCC
* * * *
15609165 ATTCGATCTCTTACCTCGAGCCTGGGGCAGATCATCATCAGTAAATCTCTTACCCTGATCATGAG
1 ATTCGATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTTACCCCGATCATGGG
15609230 GCAGATTGCAGCC
66 GCAGATTGCAGCC
* * * *
15609243 ATTCGATCTCTTACCCCGAGCTTGGGGTAAATCATCATCAGCAAATCTCTTACCCCAATCATGGG
1 ATTCGATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTTACCCCGATCATGGG
* **
15609308 GTAGATTATAGCC
66 GCAGATTGCAGCC
* ** * *
15609321 ATTCGATCTTTTACCCCGAGCCTGAAGCAGATCACCATCAGCCAATCTCTTACCCCGATCATGGG
1 ATTCGATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTTACCCCGATCATGGG
* *
15609386 GCAAATTGCATCC
66 GCAGATTGCAGCC
* * *
15609399 ATTTGATCTCTTACCCCGAGCCTGGGGCAGATCATCATTAGCAAATCTCTTACCCCGATCATGAG
1 ATTCGATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTTACCCCGATCATGGG
* *
15609464 GCATATTGCAACC
66 GCAGATTGCAGCC
* ** * *
15609477 ATTCGATCTTTTACCCCGAGCCTAAGGCAGATCA-CTATCAGCCAATCTCTTACCCCGATCATAG
1 ATTCGATCTCTTACCCCGAGCCTGGGGCAGATCATC-ATCAGCAAATCTCTTACCCCGATCATGG
*
15609541 GGCAGATTACAGCC
65 GGCAGATTGCAGCC
** * * * *
15609555 ATTTAATCCCTTACCCCGAGCCTAGGGCAGATCATCATCAGTAAATCTCTTACCCCGATTATGGG
1 ATTCGATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTTACCCCGATCATGGG
* * *
15609620 GCAAATTACAGTC
66 GCAGATTGCAGCC
* * * *
15609633 ATTCGATCTATTACCCTGAGTCTGGGGCAGATCATCATCAACAAATCTCTTACCCCGATCATGGG
1 ATTCGATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTTACCCCGATCATGGG
*
15609698 ACAGATTGCAGCC
66 GCAGATTGCAGCC
* * * * * *
15609711 ATTCGATCTTTTACCCCGAGCTTGGGACAGATCACCATCAGCCAATCTCTTACCCCGATCATAGG
1 ATTCGATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTTACCCCGATCATGGG
*
15609776 GTAGATTGCAGCC
66 GCAGATTGCAGCC
* * * * *
15609789 ATTCGATCTGTTACCTCGAGCCTGGGGTAGATCATCATCAGCCAATCTCTTACCCCAATCATGGG
1 ATTCGATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTTACCCCGATCATGGG
15609854 GCAGATT
66 GCAGATT
15609861 ATAGTCATTC
Statistics
Matches: 593, Mismatches: 101, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
77 1 0.00
78 570 0.96
79 22 0.04
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (78 bp):
ATTCGATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTTACCCCGATCATGGG
GCAGATTGCAGCC
Found at i:15610299 original size:17 final size:17
Alignment explanation
Indices: 15610279--15610379 Score: 125
Period size: 17 Copynumber: 6.1 Consensus size: 17
15610269 ATGGAACCCA
*
15610279 ATTTTAAATTTTAATTT
1 ATTTTAAATTTAAATTT
* *
15610296 A-TTTAAGTTTGAATTT
1 ATTTTAAATTTAAATTT
*
15610312 ATTTTAAATTTAAACTT
1 ATTTTAAATTTAAATTT
* * *
15610329 ATTTTGAGTTTGAATTT
1 ATTTTAAATTTAAATTT
15610346 ATTTTAAATTTAAATTT
1 ATTTTAAATTTAAATTT
15610363 ATTTTAAA-TTAAATTT
1 ATTTTAAATTTAAATTT
15610379 A
1 A
15610380 AATTTTAAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
16 23 0.32
17 48 0.68
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.57
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:15610325 original size:6 final size:6
Alignment explanation
Indices: 15610281--15610384 Score: 60
Period size: 6 Copynumber: 18.5 Consensus size: 6
15610271 GGAACCCAAT
* * * *
15610281 TTTAAA TTTTAA TTT--A TTTAAG TTTGAA TTT-AT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * * * * * *
15610326 CTT-AT TTTGAG TTTGAA TTT-AT TTTAAA TTTAAA TTT-AT TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
15610371 -TTAAA TTTAAA TTT
1 TTTAAA TTTAAA TTT
15610385 TAAAAGTTCA
Statistics
Matches: 76, Mismatches: 15, Indels: 14
0.72 0.14 0.13
Matches are distributed among these distances:
4 4 0.05
5 20 0.26
6 52 0.68
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.58
Consensus pattern (6 bp):
TTTAAA
Found at i:15610344 original size:34 final size:34
Alignment explanation
Indices: 15610279--15610369 Score: 148
Period size: 34 Copynumber: 2.7 Consensus size: 34
15610269 ATGGAACCCA
*
15610279 ATTTTAAATTTTAATTTA-TTTAAGTTTGAATTT
1 ATTTTAAATTTAAATTTATTTTAAGTTTGAATTT
* *
15610312 ATTTTAAATTTAAACTTATTTTGAGTTTGAATTT
1 ATTTTAAATTTAAATTTATTTTAAGTTTGAATTT
15610346 ATTTTAAATTTAAATTTATTTTAA
1 ATTTTAAATTTAAATTTATTTTAA
15610370 ATTAAATTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
33 16 0.31
34 36 0.69
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.58
Consensus pattern (34 bp):
ATTTTAAATTTAAATTTATTTTAAGTTTGAATTT
Found at i:15610416 original size:20 final size:19
Alignment explanation
Indices: 15610388--15610435 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
15610378 TAAATTTTAA
*
15610388 AAGTTCAAAAGTACAAATTC
1 AAGTCCAAAA-TACAAATTC
* *
15610408 AAGTCCAAAATATAATTTC
1 AAGTCCAAAATACAAATTC
*
15610427 AAGCCCAAA
1 AAGTCCAAA
15610436 CACTAAAACT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.50, C:0.19, G:0.08, T:0.23
Consensus pattern (19 bp):
AAGTCCAAAATACAAATTC
Found at i:15612319 original size:29 final size:28
Alignment explanation
Indices: 15612265--15612574 Score: 189
Period size: 30 Copynumber: 10.6 Consensus size: 28
15612255 TTATAATTTG
**
15612265 CCCCTAAACTTCCAAAAACCACATTTTTA
1 CCCC-AAACTTCCAAAAAATACATTTTTA
* *
15612294 CCCTAAACTTCTCAAAAAATACATTTTTTG
1 CCCCAAACTTC-CAAAAAATACA-TTTTTA
* *
15612324 CCTCCGAACTTCCAAAAAATATATTTTTTA
1 CC-CCAAACTTCCAAAAAATACA-TTTTTA
* * * *
15612354 CCCCCAAACTTTCAAAAATTACGTTTTTC
1 -CCCCAAACTTCCAAAAAATACATTTTTA
*
15612383 CCCCGAACTTCCAAAAAATTACATTTTTA
1 CCCCAAACTTCCAAAAAA-TACATTTTTA
*
15612412 CCCCCGAACTTCC-AAAAATCACA-TTTT-
1 -CCCCAAACTTCCAAAAAAT-ACATTTTTA
* * * *
15612439 CCCCAATCTTCCAAAAATTAAATTTTTTG
1 CCCCAAACTTCCAAAAAATACA-TTTTTA
* *
15612468 CCTCCAAATTTCCAAAAAATCACATTTTTG
1 CC-CCAAACTTCCAAAAAAT-ACATTTTTA
** * * *
15612498 CCGTAGACTTTTC-AAAAATCACATTTTCA
1 CCCCAAAC-TTCCAAAAAAT-ACATTTTTA
* *
15612527 CCTCAAACTCTCC-TAAAATGACATTTTTA
1 CCCCAAACT-TCCAAAAAAT-ACATTTTTA
15612556 CCCCTAAAACTTTCCAAAA
1 CCCC--AAAC-TTCCAAAA
15612575 TTGCATTTTA
Statistics
Matches: 219, Mismatches: 43, Indels: 35
0.74 0.14 0.12
Matches are distributed among these distances:
26 12 0.05
27 5 0.02
28 32 0.15
29 74 0.34
30 75 0.34
31 18 0.08
32 3 0.01
ACGTcount: A:0.36, C:0.28, G:0.03, T:0.33
Consensus pattern (28 bp):
CCCCAAACTTCCAAAAAATACATTTTTA
Found at i:15612497 original size:30 final size:28
Alignment explanation
Indices: 15612261--15612574 Score: 186
Period size: 29 Copynumber: 10.7 Consensus size: 28
15612251 AAAATTATAA
*
15612261 TTTGCCCCTAAACTTCCAAAAACCACATT
1 TTTGCCCC-AAACTTCCAAAAATCACATT
* *
15612290 TTTACCCTAAACTTCTCAAAAAAT-ACATTT
1 TTTGCCCCAAACTTC-C-AAAAATCACA-TT
* *
15612320 TTTGCCTCCGAACTTCCAAAAAAT-ATATTT
1 TTTGCC-CCAAACTTCC-AAAAATCACA-TT
* * * *
15612350 TTTACCCCCAAACTTTCAAAAATTACGTT
1 TTT-GCCCCAAACTTCCAAAAATCACATT
* * *
15612379 TTTCCCCCGAACTTCCAAAAAATTACATT
1 TTTGCCCCAAACTTCC-AAAAATCACATT
* *
15612408 TTTACCCCCGAACTTCCAAAAATCACA-T
1 TTT-GCCCCAAACTTCCAAAAATCACATT
* * *
15612436 TTT-CCCCAATCTTCCAAAAATTAAATTT
1 TTTGCCCCAAACTTCCAAAAATCACA-TT
*
15612464 TTTGCCTCCAAATTTCCAAAAAATCACATT
1 TTTGCC-CCAAACTTCC-AAAAATCACATT
** * *
15612494 TTTGCCGTAGACTTTTCAAAAATCACATT
1 TTTGCCCCAAAC-TTCCAAAAATCACATT
** * * *
15612523 TTCACCTCAAACTCTCCTAAAATGACATT
1 TTTGCCCCAAACT-TCCAAAAATCACATT
*
15612552 TTTACCCCTAAAACTTTCCAAAA
1 TTTGCCCC--AAAC-TTCCAAAA
15612575 TTGCATTTTA
Statistics
Matches: 227, Mismatches: 40, Indels: 34
0.75 0.13 0.11
Matches are distributed among these distances:
26 18 0.08
28 27 0.12
29 85 0.37
30 69 0.30
31 27 0.12
32 1 0.00
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.33
Consensus pattern (28 bp):
TTTGCCCCAAACTTCCAAAAATCACATT
Found at i:15612582 original size:30 final size:31
Alignment explanation
Indices: 15612531--15612589 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
15612521 TTTTCACCTC
*
15612531 AAACTCTCCTAAAATGACATTTTTACCCCTA
1 AAACTCTCCTAAAATGACATTTTAACCCCTA
*
15612562 AAACTTTCC-AAAATTG-CATTTTAACCCC
1 AAACTCTCCTAAAA-TGACATTTTAACCCC
15612590 GAACTCTCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.36, C:0.29, G:0.03, T:0.32
Consensus pattern (31 bp):
AAACTCTCCTAAAATGACATTTTAACCCCTA
Found at i:15613039 original size:97 final size:97
Alignment explanation
Indices: 15612868--15613061 Score: 309
Period size: 97 Copynumber: 2.0 Consensus size: 97
15612858 AAAATATTTA
* * * * *
15612868 AAATCGAGGCAATTTTCCTTTATTTCGGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGCGAT
1 AAATCGAGGCAATATTCCTCTATCTCAGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCACGAT
*
15612933 TTTACTTCAAACCGGGATAATCGAATACCCTT
66 TTTACTTCAAACCGGGATAATCAAATACCCTT
15612965 AAATCGAGGCAATATTCCTCTATCTCAGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCACGAC
1 AAATCGAGGCAATATTCCTCTATCTCAGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCACGA-
*
15613030 TTTT-TTTCAAACCGGGATAATCAAATACCCTT
65 TTTTACTTCAAACCGGGATAATCAAATACCCTT
15613062 TTTCAAGGTT
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
97 85 0.96
98 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (97 bp):
AAATCGAGGCAATATTCCTCTATCTCAGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCACGAT
TTTACTTCAAACCGGGATAATCAAATACCCTT
Found at i:15620054 original size:11 final size:11
Alignment explanation
Indices: 15620040--15620096 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
15620030 TTGTTTTAGG
15620040 TTTAAATTTAT
1 TTTAAATTTAT
*
15620051 TTTAAATTTAA
1 TTTAAATTTAT
* * * *
15620062 ATTGATTTTGAG
1 TTTAAATTT-AT
*
15620074 TTTAAATTAAT
1 TTTAAATTTAT
15620085 TTTAAATTTAT
1 TTTAAATTTAT
15620096 T
1 T
15620097 CAAATCTAAA
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
11 28 0.82
12 6 0.18
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (11 bp):
TTTAAATTTAT
Found at i:15620061 original size:34 final size:34
Alignment explanation
Indices: 15620023--15620094 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 34
15620013 AACTCATTTT
*
15620023 TTTAAATTTG-TTTT-AGGTTTAAATTTATTTTAAA
1 TTTAAA-TTGATTTTGA-GTTTAAATTAATTTTAAA
15620057 TTTAAATTGATTTTGAGTTTAAATTAATTTTAAA
1 TTTAAATTGATTTTGAGTTTAAATTAATTTTAAA
15620091 TTTA
1 TTTA
15620095 TTCAAATCTA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
33 3 0.09
34 31 0.89
35 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (34 bp):
TTTAAATTGATTTTGAGTTTAAATTAATTTTAAA
Found at i:15620086 original size:17 final size:17
Alignment explanation
Indices: 15620023--15620094 Score: 72
Period size: 17 Copynumber: 4.2 Consensus size: 17
15620013 AACTCATTTT
** *
15620023 TTTAAATTTGTTTTAGG
1 TTTAAATTAATTTTAAG
* *
15620040 TTTAAATTTATTTTAAA
1 TTTAAATTAATTTTAAG
* *
15620057 TTTAAATTGATTTTGAG
1 TTTAAATTAATTTTAAG
*
15620074 TTTAAATTAATTTTAAA
1 TTTAAATTAATTTTAAG
15620091 TTTA
1 TTTA
15620095 TTCAAATCTA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (17 bp):
TTTAAATTAATTTTAAG
Found at i:15622041 original size:29 final size:28
Alignment explanation
Indices: 15621999--15622285 Score: 161
Period size: 29 Copynumber: 9.8 Consensus size: 28
15621989 AGAGGCCCCC
* *
15621999 AAACTACTCAAAAATTATATTTTACCCT
1 AAACTTCTCAAAAATTACATTTTACCCT
* *
15622027 AAAACTTCTTAAAAATTATATTTTTACCCCT
1 -AAACTTCTCAAAAATTACA-TTTTA-CCCT
*
15622058 AAACTT-TCAAAAATCACATTTTTACCCTT
1 AAACTTCTCAAAAATTACA-TTTTACCC-T
* *
15622087 AAACTGCTCAAAAATCACATTTTGACCCT
1 AAACTTCTCAAAAATTACATTTT-ACCCT
* * *
15622116 AAACTTTTCCAAAATTACCATTTTACCCCCC
1 AAACTTCTCAAAAATTA-CATTTTA--CCCT
* * *
15622147 AAACATC-CAAAAATCACATTTTGACCCC
1 AAACTTCTCAAAAATTACATTTT-ACCCT
* * *
15622175 AAACTTTTCCAAAATTACCATTTTACACCC
1 AAACTTCTCAAAAATTA-CATTTTAC-CCT
* * * * *
15622205 GAACATC-CAAAAGTTTCCATTTTAACCCC
1 AAACTTCTCAAAA-ATTACATTTT-ACCCT
* *
15622234 AAACTTTTTC-AAAATTACCATTTTTCCCT
1 AAAC-TTCTCAAAAATTA-CATTTTACCCT
* *
15622263 GAACATC-CAAAAATTACCATTTT
1 AAACTTCTCAAAAATTA-CATTTT
15622286 GCCCCCGAAC
Statistics
Matches: 205, Mismatches: 35, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
27 1 0.00
28 27 0.13
29 96 0.47
30 68 0.33
31 13 0.06
ACGTcount: A:0.38, C:0.27, G:0.02, T:0.33
Consensus pattern (28 bp):
AAACTTCTCAAAAATTACATTTTACCCT
Found at i:15622130 original size:59 final size:59
Alignment explanation
Indices: 15622018--15622262 Score: 209
Period size: 59 Copynumber: 4.2 Consensus size: 59
15622008 AAAAATTATA
* * * * * *
15622018 TTTTACCCTAAAACTTCTTAAAAATTATATTTTTACCCCTAAAC-TTTCAAAAATCA-CAT
1 TTTTACCCTAAAAC-TCTCAAAAATCACATTTTGA-CCCTAAACTTTTCCAAAATTACCAT
*
15622077 TTTTACCCTTAAACTGCTCAAAAATCACATTTTGACCCTAAACTTTTCCAAAATTACCA-
1 TTTTACCCTAAAACT-CTCAAAAATCACATTTTGACCCTAAACTTTTCCAAAATTACCAT
** *
15622136 TTTTACCCCCCAAACATC-CAAAAATCACATTTTGACCCCAAACTTTTCCAAAATTACCAT
1 TTTTA-CCCTAAAAC-TCTCAAAAATCACATTTTGACCCTAAACTTTTCCAAAATTACCAT
* * * * * * *
15622196 TTTACACCCGAACA-TC-CAAAAGTTTC-CATTTTAACCCCAAACTTTTTCAAAATTACCAT
1 TTT-TACCCTAAAACTCTCAAAA--ATCACATTTTGACCCTAAACTTTTCCAAAATTACCAT
15622255 TTTT-CCCT
1 TTTTACCCT
15622263 GAACATCCAA
Statistics
Matches: 158, Mismatches: 19, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
57 3 0.02
58 16 0.10
59 117 0.74
60 20 0.13
61 2 0.01
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34
Consensus pattern (59 bp):
TTTTACCCTAAAACTCTCAAAAATCACATTTTGACCCTAAACTTTTCCAAAATTACCAT
Found at i:15622269 original size:58 final size:57
Alignment explanation
Indices: 15622104--15622313 Score: 237
Period size: 59 Copynumber: 3.6 Consensus size: 57
15622094 TCAAAAATCA
* * *
15622104 CATTTTGACCCTAAACTTTTCCAAAATTACCATTTTACCCCCCAAACATCCAAAA-ATC
1 CATTTTGACCCCAAACTTTTCCAAAATTACCATTTTA--CCCCGAACATCCAAAATTTC
15622162 ACATTTTGACCCCAAACTTTTCCAAAATTACCATTTTACACCCGAACATCCAAAAGTTTC
1 -CATTTTGACCCCAAACTTTTCCAAAATTACCATTTTAC-CCCGAACATCCAAAA-TTTC
* * * * *
15622222 CATTTTAACCCCAAACTTTTTCAAAATTACCATTTTTCCCTGAACATCCAAAAATTAC
1 CATTTTGACCCCAAACTTTTCCAAAATTACCATTTTACCCCGAACATCC-AAAATTTC
* * * *
15622280 CATTTTGCCCCCGAAC--ATCTAAAATTACCATTTT
1 CATTTTGACCCCAAACTTTTCCAAAATTACCATTTT
15622314 CGACCTTAAA
Statistics
Matches: 133, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
56 15 0.11
57 1 0.01
58 40 0.30
59 75 0.56
60 2 0.02
ACGTcount: A:0.35, C:0.30, G:0.03, T:0.32
Consensus pattern (57 bp):
CATTTTGACCCCAAACTTTTCCAAAATTACCATTTTACCCCGAACATCCAAAATTTC
Found at i:15622276 original size:28 final size:28
Alignment explanation
Indices: 15622244--15622313 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
15622234 AAACTTTTTC
* *
15622244 AAAATTACCATTTT-TCCCTGAACATCCA
1 AAAATTACCATTTTGCCCCCGAACAT-CA
*
15622272 AAAATTACCATTTTGCCCCCGAACATCT
1 AAAATTACCATTTTGCCCCCGAACATCA
15622300 AAAATTACCATTTT
1 AAAATTACCATTTT
15622314 CGACCTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 29 0.76
29 9 0.24
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.33
Consensus pattern (28 bp):
AAAATTACCATTTTGCCCCCGAACATCA
Found at i:15626823 original size:17 final size:18
Alignment explanation
Indices: 15626801--15626881 Score: 96
Period size: 17 Copynumber: 4.7 Consensus size: 18
15626791 CAAACCCATT
15626801 TTAAATTTATTTTAAGA-
1 TTAAATTTATTTTAAGAG
* * *
15626818 TTAAATTTGTTTTAAAAT
1 TTAAATTTATTTTAAGAG
15626836 TTAAATTTATTTTAA-AG
1 TTAAATTTATTTTAAGAG
* *
15626853 TTAAATTTAATTTAAG-T
1 TTAAATTTATTTTAAGAG
15626870 TTAAATTTATTT
1 TTAAATTTATTT
15626882 ACAAATTTAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
17 41 0.75
18 14 0.25
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (18 bp):
TTAAATTTATTTTAAGAG
Found at i:15626839 original size:35 final size:34
Alignment explanation
Indices: 15626800--15626881 Score: 112
Period size: 35 Copynumber: 2.4 Consensus size: 34
15626790 CCAAACCCAT
**
15626800 TTTAAATTTATTTT-AAGATTAAATTTGTTTTAAAA
1 TTTAAATTTATTTTAAAG-TTAAATTTAATTT-AAA
*
15626835 TTTAAATTTATTTTAAAGTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAAGTTAAATTTAATTTAAA
15626869 TTTAAATTTATTT
1 TTTAAATTTATTT
15626882 ACAAATTTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
34 15 0.35
35 25 0.58
36 3 0.07
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (34 bp):
TTTAAATTTATTTTAAAGTTAAATTTAATTTAAA
Found at i:15626843 original size:6 final size:6
Alignment explanation
Indices: 15626832--15626878 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
15626822 ATTTGTTTTA
* * *
15626832 AAATTT AAATTT -ATTTT AAAGTT AAATTT -AATTT AAGTTT AAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
15626878 A
1 A
15626879 TTTACAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
5 9 0.27
6 24 0.73
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (6 bp):
AAATTT
Found at i:15628843 original size:29 final size:29
Alignment explanation
Indices: 15628811--15629029 Score: 112
Period size: 29 Copynumber: 7.4 Consensus size: 29
15628801 AAAACTTTTT
*
15628811 AAAATTCCATTTTTAACCTCGATTTCACC
1 AAAATTCCATTTTTAACCTCGATTTTACC
*
15628840 AAAATTACCA-TTTTACCCTCGAACTTTTA--
1 AAAATT-CCATTTTTAACCTCG-A-TTTTACC
* *
15628869 AAAATTCTATTTTTAACCTCAATTTTACC
1 AAAATTCCATTTTTAACCTCGATTTTACC
* * * *
15628898 AAAAATTAC-TATTTTACCCTTGAACTTT-CC
1 -AAAATTCCAT-TTTTAACCTCG-ATTTTACC
* * * *
15628928 AAAATTCTATTTTTGACCCCGATTTTACTA
1 AAAATTCCATTTTTAACCTCGATTTTAC-C
* * *
15628958 AAAATTACC-GTTTTACCCTCGAACTTT-CC
1 AAAATT-CCATTTTTAACCTCG-ATTTTACC
* * * *
15628987 AAAATCCCCTTTTTAACC-CAATTTCAACC
1 AAAATTCCATTTTTAACCTCGATTT-TACC
15629016 AAAATTACCATTTT
1 AAAATT-CCATTTT
15629030 GCCCCCGAGT
Statistics
Matches: 138, Mismatches: 34, Indels: 35
0.67 0.16 0.17
Matches are distributed among these distances:
27 8 0.06
28 10 0.07
29 65 0.47
30 42 0.30
31 13 0.09
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.39
Consensus pattern (29 bp):
AAAATTCCATTTTTAACCTCGATTTTACC
Found at i:15628873 original size:58 final size:58
Alignment explanation
Indices: 15628811--15629029 Score: 260
Period size: 59 Copynumber: 3.7 Consensus size: 58
15628801 AAAACTTTTT
* **
15628811 AAAATTCCATTTTTAACCTCGATTTCACCAAAATTACCATTTTACCCTCGAACTTTTA
1 AAAATTCCATTTTTAACCTCAATTTCACCAAAATTACCATTTTACCCTCGAACTTTCC
* * * *
15628869 AAAATTCTATTTTTAACCTCAATTTTACCAAAAATTACTATTTTACCCTTGAACTTTCC
1 AAAATTCCATTTTTAACCTCAATTTCACC-AAAATTACCATTTTACCCTCGAACTTTCC
* * * * * * *
15628928 AAAATTCTATTTTTGACCCCGATTTTACTAAAAATTACCGTTTTACCCTCGAACTTTCC
1 AAAATTCCATTTTTAACCTCAATTTCAC-CAAAATTACCATTTTACCCTCGAACTTTCC
* *
15628987 AAAATCCCCTTTTTAACC-CAATTTCAACCAAAATTACCATTTT
1 AAAATTCCATTTTTAACCTCAATTTC-ACCAAAATTACCATTTT
15629030 GCCCCCGAGT
Statistics
Matches: 136, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
58 44 0.32
59 92 0.68
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.39
Consensus pattern (58 bp):
AAAATTCCATTTTTAACCTCAATTTCACCAAAATTACCATTTTACCCTCGAACTTTCC
Found at i:15634547 original size:14 final size:14
Alignment explanation
Indices: 15634530--15634587 Score: 57
Period size: 14 Copynumber: 4.0 Consensus size: 14
15634520 AAACAAATAA
15634530 AAAAAAAGAGAAAG
1 AAAAAAAGAGAAAG
15634544 AAAAAAAGA-AAAG
1 AAAAAAAGAGAAAG
15634557 CAAAAACAAGAAGAAA-
1 -AAAAA-AAG-AGAAAG
*
15634573 AAACAAAATAGAAAG
1 AAA-AAAAGAGAAAG
15634588 GAGAGGTCGA
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
13 4 0.11
14 19 0.51
15 8 0.22
16 3 0.08
17 3 0.08
ACGTcount: A:0.78, C:0.05, G:0.16, T:0.02
Consensus pattern (14 bp):
AAAAAAAGAGAAAG
Found at i:15636150 original size:92 final size:92
Alignment explanation
Indices: 15635993--15637088 Score: 1800
Period size: 92 Copynumber: 11.9 Consensus size: 92
15635983 AATAGCAAGT
* * * *
15635993 CTTTATCTCTTTGAAGTTGTAGTAAGATTC-AGATGAAGCTTCAAACATCAATTCTTATCCTCTT
1 CTTTATCTCTCTGAAGTTATAGTAAGA-GCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTT
* *
15636057 GAAGTTATATTAAAGTTGGATAACAAAC
65 GAAGTTATAGTAAAGTTGGATAACGAAC
* *
15636085 CTTTATCTCTCTGAAGTTATTGTAAGAGCAAGATGAAGCTTCAAATGTCAATTCTTATCCTCTTG
1 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
* *
15636150 AAGTCATATTAAAGTTGGATAACGAAC
66 AAGTTATAGTAAAGTTGGATAACGAAC
* *
15636177 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATAAAGCTTCAAACGTAAATTCTTATCCTCTTG
1 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
15636242 AAGTTATAGTAAAGTTGGATAACGAAC
66 AAGTTATAGTAAAGTTGGATAACGAAC
* *
15636269 CTTTATCTCTTTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACCTCAATTCTTATCCTCTTG
1 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
*
15636334 AAGTTATAGTAAAGTTGGATAACGACC
66 AAGTTATAGTAAAGTTGGATAACGAAC
* *
15636361 CCTTATCTCTCTGAAGTTATAGTAAGAGCCAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
1 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
* *
15636426 AAATTATAGTAAAGTTGGATAACAAAC
66 AAGTTATAGTAAAGTTGGATAACGAAC
* *
15636453 CTTTATCTCTCTAAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTGTCCTCTTG
1 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
15636518 AAGTTATAGTAAAGTTGGATAACGAAC
66 AAGTTATAGTAAAGTTGGATAACGAAC
15636545 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
1 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
*
15636610 AAGTTATAGTAAAGTTGGATAACAAAC
66 AAGTTATAGTAAAGTTGGATAACGAAC
* * *
15636637 CTTTATCTCTCTAAAGTTATAGTAAGAGCAAGATAAAGCTTCAAATGTCAATTCTTATCCTCTTG
1 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
*
15636702 AAGTTATAGTAAAGTTGGATAACGAGC
66 AAGTTATAGTAAAGTTGGATAACGAAC
* *
15636729 CCTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACCTCAATTCTTATCCTCTTG
1 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
15636794 AAGTTATAGTAAAGTTGGATAACGAAC
66 AAGTTATAGTAAAGTTGGATAACGAAC
* *
15636821 CCTTATCTCTCTGAAGTTATAGTAAGAGCCAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
1 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
*
15636886 AAGTTATAGTAAAGTTGGGTAACGAAC
66 AAGTTATAGTAAAGTTGGATAACGAAC
15636913 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
1 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
*
15636978 AAGTTATAGTAAAGTTGGATAA-TAAC
66 AAGTTATAGTAAAGTTGGATAACGAAC
* * ** * * *
15637004 ATTTATCTTTCTGAAGTCGTAGTAAGAGCAAGATAAAGCTTCAAACATCAATTCCTATCCTCTTG
1 CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
**
15637069 AAGTTGCAGTAAAGTTGGAT
66 AAGTTATAGTAAAGTTGGAT
15637089 TAAAAACAAA
Statistics
Matches: 941, Mismatches: 62, Indels: 3
0.94 0.06 0.00
Matches are distributed among these distances:
91 80 0.09
92 861 0.91
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (92 bp):
CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
AAGTTATAGTAAAGTTGGATAACGAAC
Found at i:15637752 original size:35 final size:34
Alignment explanation
Indices: 15637713--15637822 Score: 116
Period size: 35 Copynumber: 3.2 Consensus size: 34
15637703 CCAAACCCAT
**
15637713 TTTAAATTTATTTT-AAGATTAAATTTGTTTTAAAA
1 TTTAAATTTATTTTAAAG-TTAAATTTAATTT-AAA
*
15637748 TTTAAATTTATTTTAAAGTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAAGTTAAATTTAATTTAAA
* * *
15637782 TTTAAATTTATTTACAAATTTAAAATT-ATTATAAA
1 TTTAAATTTATTT-TAAAGTTAAATTTAATT-TAAA
15637817 TTTAAA
1 TTTAAA
15637823 AATAAAAGTC
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
34 18 0.28
35 44 0.68
36 3 0.05
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.52
Consensus pattern (34 bp):
TTTAAATTTATTTTAAAGTTAAATTTAATTTAAA
Found at i:15637756 original size:6 final size:6
Alignment explanation
Indices: 15637745--15637791 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
15637735 ATTTGTTTTA
* * *
15637745 AAATTT AAATTT -ATTTT AAAGTT AAATTT -AATTT AAGTTT AAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
15637791 A
1 A
15637792 TTTACAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
5 9 0.27
6 24 0.73
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (6 bp):
AAATTT
Found at i:15637780 original size:52 final size:52
Alignment explanation
Indices: 15637714--15637822 Score: 148
Period size: 52 Copynumber: 2.1 Consensus size: 52
15637704 CAAACCCATT
* * * *
15637714 TTAAATTTATTTTAAGATTAAATTTGTTTTA-AAATTTAAATTTATTTTAAAG
1 TTAAATTTAATTTAAGATTAAATTT-ATTTACAAATTTAAAATTATTATAAAG
* *
15637766 TTAAATTTAATTTAAGTTTAAATTTATTTACAAATTTAAAATTATTATAAAT
1 TTAAATTTAATTTAAGATTAAATTTATTTACAAATTTAAAATTATTATAAAG
15637818 TTAAA
1 TTAAA
15637823 AATAAAAGTC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
51 4 0.08
52 46 0.92
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (52 bp):
TTAAATTTAATTTAAGATTAAATTTATTTACAAATTTAAAATTATTATAAAG
Found at i:15637823 original size:17 final size:17
Alignment explanation
Indices: 15637713--15637822 Score: 98
Period size: 17 Copynumber: 6.4 Consensus size: 17
15637703 CCAAACCCAT
*
15637713 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTATAA-A
* *
15637731 -TTAAATTTGTTTTAAAA
1 TTTAAATTTATTAT-AAA
*
15637748 TTTAAATTTATTTTAAA
1 TTTAAATTTATTATAAA
* *
15637765 GTTAAATTTAATT-TAAG
1 TTTAAATTT-ATTATAAA
*
15637782 TTTAAATTTATTTACAAA
1 TTTAAATTTA-TTATAAA
*
15637800 TTTAAAATTATTATAAA
1 TTTAAATTTATTATAAA
15637817 TTTAAA
1 TTTAAA
15637823 AATAAAAGTC
Statistics
Matches: 78, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
16 1 0.01
17 49 0.63
18 28 0.36
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.52
Consensus pattern (17 bp):
TTTAAATTTATTATAAA
Found at i:15639810 original size:58 final size:58
Alignment explanation
Indices: 15639755--15640206 Score: 495
Period size: 58 Copynumber: 7.7 Consensus size: 58
15639745 AAAACTTTTT
* * *
15639755 AAAATTCCATTTTTAACCTCGATTTCACCAAAATTACCATTTTACCCTCGAACTTTCT
1 AAAATTCCATTTTTAACCTCAATTTTACCAAAATTACCATTTTACCCTCGAACTTTCC
* * * * * * *
15639813 AAAATTCCATTTTTAACCCCTATTTCAACAAAATTACCATTTTACCCCCGAACTGTCT
1 AAAATTCCATTTTTAACCTCAATTTTACCAAAATTACCATTTTACCCTCGAACTTTCC
*
15639871 AAAATTCTATTTTTAACCTCAATTTTACCAAAATTACCATTTTACTCC-CGAACTTTCC
1 AAAATTCCATTTTTAACCTCAATTTTACCAAAATTACCATTTTAC-CCTCGAACTTTCC
* * *
15639929 AAAATTTC-GTTTTAACCTCGATTTTACCAAGAATTACCATTTTACCCTCGAAC-TTCTC
1 AAAATTCCATTTTTAACCTCAATTTTACCAA-AATTACCATTTTACCCTCGAACTTTC-C
* * * *
15639987 AAAATTCCATTTTTGACCCCAATTTTACCAAAAATTATCATTTTACCCTCGAACTTCCC
1 AAAATTCCATTTTTAACCTCAATTTTACC-AAAATTACCATTTTACCCTCGAACTTTCC
* ** * * * *
15640046 AAAATTCTATTTTCGACCTCGATTTTACCAAAAATTACTATTTTACCTTTGAACTTTCC
1 AAAATTCCATTTTTAACCTCAATTTTACC-AAAATTACCATTTTACCCTCGAACTTTCC
* *
15640105 AAAATTCC-TTTTTGACC-CTAATTTTTCCTAAAAATTACCATTTTACCCTCGAACTTTCC
1 AAAATTCCATTTTTAACCTC-AATTTTACC--AAAATTACCATTTTACCCTCGAACTTTCC
* * *
15640164 AAAA-TCCTCTTTTTGACC-CAATTTCAACCAAAATTACCATTTT
1 AAAATTCC-ATTTTTAACCTCAATTT-TACCAAAATTACCATTTT
15640207 CACCTCGGGT
Statistics
Matches: 341, Mismatches: 41, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
57 26 0.08
58 166 0.49
59 133 0.39
60 16 0.05
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (58 bp):
AAAATTCCATTTTTAACCTCAATTTTACCAAAATTACCATTTTACCCTCGAACTTTCC
Found at i:15640109 original size:29 final size:28
Alignment explanation
Indices: 15639782--15640168 Score: 156
Period size: 29 Copynumber: 13.2 Consensus size: 28
15639772 CTCGATTTCA
*
15639782 CCAAAATTACCATTTTACCCTCGAACTTT
1 CCAAAATTACTATTTTA-CCTCGAACTTT
* * **
15639811 CTAAAATT-CCATTTTTAACC-CCTA-TTT
1 CCAAAATTACTA-TTTT-ACCTCGAACTTT
* * *
15639838 CAACAAAATTACCATTTTACCCCCGAACTGT
1 C--CAAAATTACTATTTTA-CCTCGAACTTT
* *
15639869 CTAAAATT-CTATTTTTAACCTC-AATTTT
1 CCAAAATTACTA-TTTT-ACCTCGAACTTT
* *
15639897 ACCAAAATTACCATTTTACTCCCGAACTTT
1 -CCAAAATTACTATTTTAC-CTCGAACTTT
* * *
15639927 CCAAAATTTCGT-TTTAACCTCG-ATTTT
1 CCAAAATTAC-TATTTTACCTCGAACTTT
*
15639954 ACCAAGAATTACCATTTTACCCTCGAAC-TT
1 -CCAA-AATTACTATTTTA-CCTCGAACTTT
* * *
15639984 CTCAAAATT-CCATTTTTGACC-CCAATTTT
1 C-CAAAATTACTA-TTTT-ACCTCGAACTTT
*
15640013 ACCAAAAATTA-TCATTTTACCCTCGAACTTC
1 -CC-AAAATTACT-ATTTTA-CCTCGAACTTT
*
15640044 CCAAAATT-CTATTTTCGACCTCG-ATTTT
1 CCAAAATTACTATTTT--ACCTCGAACTTT
*
15640072 ACCAAAAATTACTATTTTACCTTTGAACTTT
1 -CC-AAAATTACTATTTTACC-TCGAACTTT
* * *
15640103 CCAAAATTCCT-TTTTGACC-CTAATTTTT
1 CCAAAATTACTATTTT-ACCTCGAA-CTTT
*
15640131 CCTAAAAATTACCATTTTACCCTCGAACTTT
1 CC--AAAATTACTATTTTA-CCTCGAACTTT
15640162 CCAAAAT
1 CCAAAAT
15640169 CCTCTTTTTG
Statistics
Matches: 270, Mismatches: 43, Indels: 90
0.67 0.11 0.22
Matches are distributed among these distances:
27 10 0.04
28 44 0.16
29 122 0.45
30 59 0.22
31 32 0.12
32 3 0.01
ACGTcount: A:0.32, C:0.27, G:0.04, T:0.38
Consensus pattern (28 bp):
CCAAAATTACTATTTTACCTCGAACTTT
Found at i:15648058 original size:44 final size:45
Alignment explanation
Indices: 15647980--15648088 Score: 123
Period size: 44 Copynumber: 2.4 Consensus size: 45
15647970 TAAAATTGAA
*
15647980 ATGAAAACCCGTAAAAGGCGTCTCCAAAAAAAAAGGAA-TTCAAG
1 ATGAAAACCCGCAAAAGGCGTCTCCAAAAAAAAAGGAATTTCAAG
* ** **
15648024 ATGAAAACCCGCAAAAGGCGTC-CTGAAACCAAAAGGAATTTTGAG
1 ATGAAAACCCGCAAAAGGCGTCTC-CAAAAAAAAAGGAATTTCAAG
* *
15648069 TTGAAAACCCGCAAAGGGCG
1 ATGAAAACCCGCAAAAGGCG
15648089 GCTCAAATTT
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.02
44 32 0.58
45 22 0.40
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.14
Consensus pattern (45 bp):
ATGAAAACCCGCAAAAGGCGTCTCCAAAAAAAAAGGAATTTCAAG
Found at i:15649076 original size:78 final size:78
Alignment explanation
Indices: 15648994--15649436 Score: 527
Period size: 78 Copynumber: 5.7 Consensus size: 78
15648984 ATTGAAGATT
* * *
15648994 CGATCTCTTACCCCGAGCCTGGGGCAAATCATCATCAGCAAATCTCTTACCCCGATCATGAGGCA
1 CGATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGATCATGAGGCA
15649059 GATTGCAGCCATC
66 GATTGCAGCCATC
* * * * * *
15649072 CGATCTCTTACCCCAAGCCTGAGGCAGCTCACCATCAGCGAATCTCTTACCTCGATCATGAGGTA
1 CGATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGATCATGAGGCA
15649137 GATTGCAGCCATC
66 GATTGCAGCCATC
* * * * *
15649150 TGATCTCTTACCCTGAGCTTGGGGCAGATCACCATCAGCCAATCTCTTACCTCGAGCGA-GAGGC
1 CGATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGATC-ATGAGGC
*
15649214 AGATTGCAGCCATT
65 AGATTGCAGCCATC
* * * * * *
15649228 CGATCTTTTACCCCAAGCTTGGGGCAGATCATCATCAGCAAATCTCTTACCCCAATCATGAGGCA
1 CGATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGATCATGAGGCA
*
15649293 GATTACAGCCATC
66 GATTGCAGCCATC
* * * * * * * *
15649306 CGATCTCTTACCCTGAGCCT-AGGCAGATCACCAACAGCCAATTTTTTACCCCGAGCCAAG-GGT
1 CGATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGA-TCATGAGGC
*
15649369 AGATTACAGCCATC
65 AGATTGCAGCCATC
**
15649383 CGATCT-TTACCTTGAG-CTCGGGGCAGATCACCATCAGCCAATCTCTTACCCCGA
1 CGATCTCTTACCCCGAGCCT-GGGGCAGATCACCATCAGCCAATCTCTTACCCCGA
15649437 GCCTACGATA
Statistics
Matches: 312, Mismatches: 48, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
75 2 0.01
76 9 0.03
77 80 0.26
78 220 0.71
79 1 0.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (78 bp):
CGATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGATCATGAGGCA
GATTGCAGCCATC
Found at i:15649078 original size:39 final size:38
Alignment explanation
Indices: 15649035--15649393 Score: 200
Period size: 39 Copynumber: 9.3 Consensus size: 38
15649025 TCATCAGCAA
*
15649035 ATCTCTTACCCCGATCATGAGGCAGATTGCAGCCATCCG
1 ATCTCTTACCCCGAGCATGAGGCAGATT-CAGCCATCCG
* * *
15649074 ATCTCTTACCCCAAGCCTGAGGCAG-CTCA-CCATCAGCG
1 ATCTCTTACCCCGAGCATGAGGCAGATTCAGCCATC--CG
* * * *
15649112 AATCTCTTACCTCGATCATGAGGTAGATTGCAGCCATCTG
1 -ATCTCTTACCCCGAGCATGAGGCAGATT-CAGCCATCCG
* * * *
15649152 ATCTCTTACCCTGAGCTTGGGGCAGA-TCA-CCATCAGCCA
1 ATCTCTTACCCCGAGCATGAGGCAGATTCAGCCAT---CCG
* *
15649191 ATCTCTTACCTCGAGCGA-GAGGCAGATTGCAGCCATTCG
1 ATCTCTTACCCCGAGC-ATGAGGCAGATT-CAGCCATCCG
* * * * * *
15649230 ATCTTTTACCCCAAGCTTGGGGCAGA-TCA-TCATCAGCAA
1 ATCTCTTACCCCGAGCATGAGGCAGATTCAGCCATC--C-G
* *
15649269 ATCTCTTACCCCAATCATGAGGCAGATTACAGCCATCCG
1 ATCTCTTACCCCGAGCATGAGGCAGATT-CAGCCATCCG
* * * * *
15649308 ATCTCTTACCCTGAGCCT-AGGCAGA-TCACCAACAGCCA
1 ATCTCTTACCCCGAGCATGAGGCAGATTCAGC--CATCCG
* * * *
15649346 ATTTTTTACCCCGAGCCAAG-GGTAGATTACAGCCATCCG
1 ATCTCTTACCCCGAG-CATGAGGCAGATT-CAGCCATCCG
15649385 ATCT-TTACC
1 ATCTCTTACC
15649394 TTGAGCTCGG
Statistics
Matches: 238, Mismatches: 56, Indels: 53
0.69 0.16 0.15
Matches are distributed among these distances:
36 15 0.06
37 7 0.03
38 34 0.14
39 154 0.65
40 6 0.03
41 9 0.04
42 13 0.05
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (38 bp):
ATCTCTTACCCCGAGCATGAGGCAGATTCAGCCATCCG
Found at i:15649232 original size:156 final size:155
Alignment explanation
Indices: 15648995--15649591 Score: 569
Period size: 156 Copynumber: 3.9 Consensus size: 155
15648985 TTGAAGATTC
* * * * *
15648995 GATCTCTTACCCCGAGCCTGGGGCAAATCATCATCAGCAAATCTCTTACCCCGATCATGAGGCAG
1 GATCTCTTACCCTGAGCCTGAGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCA-GAGGCAG
* * *
15649060 ATTGCAGCCATCCGATCTCTTACCCCAAGCCTGAGGCAGCTCACCATCAGCGAATCTCTTACCTC
65 ATTGCAGCCATCCGATCTCTTACCCCAAGCCTGAGGCAGATCACCATCAGCCAATCTCTTACCCC
15649125 GATCATGAGGTAGATTGCAGCCATCT
130 GATCATGAGGTAGATTGCAGCCATCT
* * * *
15649151 GATCTCTTACCCTGAGCTTGGGGCAGATCACCATCAGCCAATCTCTTACCTCGAGCGAGAGGCAG
1 GATCTCTTACCCTGAGCCTGAGGCAGATCACCATCAGCAAATCTCTTACCCCGAGC-AGAGGCAG
* * * * * *
15649216 ATTGCAGCCATTCGATCTTTTACCCCAAGCTTGGGGCAGATCATCATCAGCAAATCTCTTACCCC
65 ATTGCAGCCATCCGATCTCTTACCCCAAGCCTGAGGCAGATCACCATCAGCCAATCTCTTACCCC
* * * *
15649281 AATCATGAGGCAGATTACAGCCATCC
130 GATCATGAGGTAGATTGCAGCCATCT
* * * * *
15649307 GATCTCTTACCCTGAGCCT-AGGCAGATCACCAACAGCCAATTTTTTACCCCGAGCCA-AGGGTA
1 GATCTCTTACCCTGAGCCTGAGGCAGATCACCATCAGCAAATCTCTTACCCCGAG-CAGA-GGCA
* *** *
15649370 GATTACAGCCATCCGATCT-TTACCTTGAG-CTCGGGGCAGATCACCATCAGCCAATCTCTTACC
64 GATTGCAGCCATCCGATCTCTTACCCCAAGCCT-GAGGCAGATCACCATCAGCCAATCTCTTACC
* * * * *
15649433 CCGAGCCT-ACGATAGATTGCAACCGT-T
128 CCGATCATGA-GGTAGATTGCAGCCATCT
** * * *
15649460 -A-C-C-T---C-GAGCCTGAAACAGATCATCATCAGCAAATCTCTTACCTCGAGCCTAG-GGAA
1 GATCTCTTACCCTGAGCCTGAGGCAGATCACCATCAGCAAATCTCTTACCCCGAG-C-AGAGGCA
* * * * * *
15649516 GATTGCAACTATTCGATTTCTTACCCCGAGCCT-AGGGCAGATCACCATCAGCCAATCTTTTACC
64 GATTGCAGCCATCCGATCTCTTACCCCAAGCCTGA-GGCAGATCACCATCAGCCAATCTCTTACC
15649580 CCGATCATGAGG
128 CCGATCATGAGG
15649592 CAAATGACAA
Statistics
Matches: 365, Mismatches: 64, Indels: 33
0.79 0.14 0.07
Matches are distributed among these distances:
145 6 0.02
146 47 0.13
147 44 0.12
148 3 0.01
149 1 0.00
150 1 0.00
151 1 0.00
152 1 0.00
153 2 0.01
154 53 0.15
155 51 0.14
156 154 0.42
157 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (155 bp):
GATCTCTTACCCTGAGCCTGAGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCAGAGGCAGA
TTGCAGCCATCCGATCTCTTACCCCAAGCCTGAGGCAGATCACCATCAGCCAATCTCTTACCCCG
ATCATGAGGTAGATTGCAGCCATCT
Found at i:15649392 original size:38 final size:37
Alignment explanation
Indices: 15649288--15649393 Score: 97
Period size: 38 Copynumber: 2.8 Consensus size: 37
15649278 CCCAATCATG
* *
15649288 AGGCAGATTACAGCCATCCGATCTCTTACCCTGAGCCT
1 AGGCAGATTACAGCCATCCGATCT-TTACCCCGAGCCA
* * * * *
15649326 AGGCAGATCACCA-ACAGCCAATTTTTTACCCCGAGCCA
1 AGGCAGATTA-CAGCCATCCGA-TCTTTACCCCGAGCCA
*
15649364 AGGGTAGATTACAGCCATCCGATCTTTACC
1 A-GGCAGATTACAGCCATCCGATCTTTACC
15649394 TTGAGCTCGG
Statistics
Matches: 51, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
38 35 0.69
39 16 0.31
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AGGCAGATTACAGCCATCCGATCTTTACCCCGAGCCA
Found at i:15650028 original size:17 final size:17
Alignment explanation
Indices: 15650006--15650085 Score: 88
Period size: 17 Copynumber: 4.7 Consensus size: 17
15649996 AACTCATTTT
* **
15650006 TTTAAATTTGTTTTAGG
1 TTTAAATTTATTTTAAA
15650023 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* * *
15650040 TTTAAATTAATTTTGAG
1 TTTAAATTTATTTTAAA
* *
15650057 TTTAAATTAAATTTAAA
1 TTTAAATTTATTTTAAA
15650074 TTTAAATTTATT
1 TTTAAATTTATT
15650086 CAAATCTAAA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 52 1.00
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:15650037 original size:11 final size:11
Alignment explanation
Indices: 15650023--15650083 Score: 59
Period size: 11 Copynumber: 5.4 Consensus size: 11
15650013 TTGTTTTAGG
*
15650023 TTTAAATTTAT
1 TTTAAATTTAA
15650034 TTTAAATTTAA
1 TTTAAATTTAA
* * *
15650045 ATTAATTTTGAG
1 TTTAAATTT-AA
*
15650057 TTTAAATTAAA
1 TTTAAATTTAA
15650068 TTTAAATTTAAA
1 TTTAAATTT-AA
15650080 TTTA
1 TTTA
15650084 TTCAAATCTA
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
11 26 0.67
12 13 0.33
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:15650044 original size:34 final size:34
Alignment explanation
Indices: 15650006--15650085 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
15649996 AACTCATTTT
* * *
15650006 TTTAAATTTGTTTT-AGGTTTAAATTTATTTTAAA
1 TTTAAATTTATTTTGA-GTTTAAATTAAATTTAAA
*
15650040 TTTAAATTAATTTTGAGTTTAAATTAAATTTAAA
1 TTTAAATTTATTTTGAGTTTAAATTAAATTTAAA
15650074 TTTAAATTTATT
1 TTTAAATTTATT
15650086 CAAATCTAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 39 0.98
35 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (34 bp):
TTTAAATTTATTTTGAGTTTAAATTAAATTTAAA
Found at i:15650049 original size:5 final size:6
Alignment explanation
Indices: 15650023--15650083 Score: 65
Period size: 6 Copynumber: 10.7 Consensus size: 6
15650013 TTGTTTTAGG
* * * *
15650023 TTTAAA TTT-AT TTTAAA TTTAAA -TTAAT TTTGAG TTTAAA -TTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
15650068 TTTAAA TTTAAA TTTA
1 TTTAAA TTTAAA TTTA
15650084 TTCAAATCTA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
5 13 0.29
6 32 0.71
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:15650095 original size:28 final size:28
Alignment explanation
Indices: 15650035--15650095 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
15650025 TAAATTTATT
* *
15650035 TTAAATTTAAATTAATTTTGAGTTTAAA
1 TTAAATTTAAATTAAATTTGAGTTCAAA
15650063 TTAAATTTAAATTTAAATTT-A-TTCAAA
1 TTAAATTTAAA-TTAAATTTGAGTTCAAA
15650090 TCTAAA
1 T-TAAA
15650096 ATAAATAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 6 0.21
28 16 0.55
29 7 0.24
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (28 bp):
TTAAATTTAAATTAAATTTGAGTTCAAA
Found at i:15652037 original size:30 final size:30
Alignment explanation
Indices: 15651943--15652163 Score: 172
Period size: 30 Copynumber: 7.5 Consensus size: 30
15651933 TGAACTGCTT
* *
15651943 AAAAATTAAATTTTTACCCCTCAAACTTCTTA
1 AAAAATTACATTTTTA-CCCTCAAACTTC-TC
15651975 AAAAATTACA-TTTTACCC-CTAAACTT-TC
1 AAAAATTACATTTTTACCCTC-AAACTTCTC
*
15652003 AAAAATCACATTTTTACCCTCAAACTTCTC
1 AAAAATTACATTTTTACCCTCAAACTTCTC
*
15652033 AAAAATTACATTTTTTCCCTCAAACTTCT-
1 AAAAATTACATTTTTACCCTCAAACTTCTC
* * * * * *
15652062 AAAAATCACAATTTGA-CCTTAAATTTTTC
1 AAAAATTACATTTTTACCCTCAAACTTCTC
* * *
15652091 -AAAATTACCA-TTTTACCTTACGAACATCT-
1 AAAAATTA-CATTTTTACCCT-CAAACTTCTC
* * *
15652120 AAAAATCACATTTTGACCC-CAAACTTTTC
1 AAAAATTACATTTTTACCCTCAAACTTCTC
*
15652149 CAAAATTACCATTTT
1 AAAAATTA-CATTTT
15652164 ACACCCGAAC
Statistics
Matches: 149, Mismatches: 28, Indels: 26
0.73 0.14 0.13
Matches are distributed among these distances:
28 35 0.23
29 39 0.26
30 61 0.41
31 5 0.03
32 9 0.06
ACGTcount: A:0.38, C:0.24, G:0.01, T:0.36
Consensus pattern (30 bp):
AAAAATTACATTTTTACCCTCAAACTTCTC
Found at i:15652037 original size:59 final size:59
Alignment explanation
Indices: 15651942--15652328 Score: 225
Period size: 59 Copynumber: 6.6 Consensus size: 59
15651932 TTGAACTGCT
* * * *
15651942 TAAAAATTAAATTTTTACCCCTCAAACTTCTTAAAAAATTA-CATTTTACCCCTAAACTT-
1 TAAAAATCACATTTTGA-CCCTCAAACTTC-TCAAAAATTACCATTTTACCCCTAAACTTC
* **
15652001 TCAAAAATCACATTTTTACCCTCAAACTTCTCAAAAATTA-CATTTTTTCCCTCAAACTTC
1 T-AAAAATCACATTTTGACCCTCAAACTTCTCAAAAATTACCATTTTACCCCT-AAACTTC
* * * * * *
15652061 TAAAAATCACAATTTGA-CCTTAAATTTTTC-AAAATTACCATTTTA-CCTTACGAACATC
1 TAAAAATCACATTTTGACCCTCAAACTTCTCAAAAATTACCATTTTACCCCTA--AACTTC
* * * *
15652119 TAAAAATCACATTTTGACCC-CAAACTTTTCCAAAATTACCATTTTACACCC-GAACATC
1 TAAAAATCACATTTTGACCCTCAAACTTCTCAAAAATTACCATTTTAC-CCCTAAACTTC
* * * * * * *
15652177 CAAATATTGC-CATTTTGACCC-CGAACTTTTCCAAAATTACCATTTTGCTCCC-GAA-TGTC
1 TAAA-AAT-CACATTTTGACCCTCAAACTTCTCAAAAATTACCATTTTAC-CCCTAAACT-TC
** * * * * *
15652236 CGAAAATTACCATTTT-ACCCTCGAACATC-C-AAAATTACCATTTT-GCCCTCAAATTTC
1 TAAAAATCA-CATTTTGACCCTCAAACTTCTCAAAAATTACCATTTTACCCCT-AAACTTC
*
15652293 CAAAAATCACATTTTCGA-CCTCAAACTT-TCTAAAAA
1 TAAAAATCACATTTT-GACCCTCAAACTTCTC-AAAAA
15652329 GTTTGATTTT
Statistics
Matches: 269, Mismatches: 35, Indels: 48
0.76 0.10 0.14
Matches are distributed among these distances:
55 3 0.01
56 7 0.03
57 44 0.16
58 82 0.30
59 115 0.43
60 16 0.06
61 2 0.01
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (59 bp):
TAAAAATCACATTTTGACCCTCAAACTTCTCAAAAATTACCATTTTACCCCTAAACTTC
Found at i:15652251 original size:29 final size:27
Alignment explanation
Indices: 15652147--15652283 Score: 148
Period size: 29 Copynumber: 4.8 Consensus size: 27
15652137 CCCAAACTTT
*
15652147 TCCAAAATTACCATTTTACACCCGAACA
1 TCCAAAATTACCATTTTGC-CCCGAACA
* *
15652175 TCCAAATATTGCCATTTTGACCCCGAACTTT
1 TCCAAA-ATTACCATTTTG-CCCCGAAC--A
**
15652206 TCCAAAATTACCATTTTGCTCCCGAATG
1 TCCAAAATTACCATTTTGC-CCCGAACA
*
15652234 TCCGAAAATTACCATTTTACCCTCGAACA
1 TCC-AAAATTACCATTTTGCCC-CGAACA
15652263 TCCAAAATTACCATTTTGCCC
1 TCCAAAATTACCATTTTGCCC
15652284 TCAAATTTCC
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
28 28 0.30
29 40 0.43
30 18 0.20
31 6 0.07
ACGTcount: A:0.31, C:0.31, G:0.07, T:0.31
Consensus pattern (27 bp):
TCCAAAATTACCATTTTGCCCCGAACA
Found at i:15652294 original size:28 final size:27
Alignment explanation
Indices: 15652128--15652297 Score: 124
Period size: 28 Copynumber: 5.9 Consensus size: 27
15652118 CTAAAAATCA
15652128 CATTTTGACCCCAAACTTTTCCAAAATTAC
1 CATTTTG-CCCCAAA--TTTCCAAAATTAC
* * ** *
15652158 CATTTTACACCCGAACATCCAAATATTGC
1 CATTTTGC-CCCAAATTTCCAAA-ATTAC
*
15652187 CATTTTGACCCCGAACTTTTCCAAAATTAC
1 CATTTTG-CCCC-AA-ATTTCCAAAATTAC
* *
15652217 CATTTTGCTCCCGAATGTCCGAAAATTAC
1 CATTTTGC-CCCAAATTTCC-AAAATTAC
* * **
15652246 CATTTTACCCTCGAACATCCAAAATTAC
1 CATTTTGCCC-CAAATTTCCAAAATTAC
15652274 CATTTTGCCCTCAAATTTCCAAAA
1 CATTTTGCCC-CAAATTTCCAAAA
15652298 ATCACATTTT
Statistics
Matches: 111, Mismatches: 21, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
28 40 0.36
29 38 0.34
30 27 0.24
31 6 0.05
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.31
Consensus pattern (27 bp):
CATTTTGCCCCAAATTTCCAAAATTAC
Found at i:15656850 original size:17 final size:17
Alignment explanation
Indices: 15656828--15656862 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
15656818 TATAGACTCG
*
15656828 TTTAGATATACTTAGTA
1 TTTAGATATAATTAGTA
15656845 TTTAGATATAATTAGTA
1 TTTAGATATAATTAGTA
15656862 T
1 T
15656863 AATATACGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.49
Consensus pattern (17 bp):
TTTAGATATAATTAGTA
Found at i:15657377 original size:12 final size:12
Alignment explanation
Indices: 15657360--15657386 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
15657350 ATTCCTTCTA
15657360 AAAGTTCATATC
1 AAAGTTCATATC
15657372 AAAGTTCATATC
1 AAAGTTCATATC
15657384 AAA
1 AAA
15657387 AAAGTACTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (12 bp):
AAAGTTCATATC
Found at i:15663982 original size:19 final size:20
Alignment explanation
Indices: 15663958--15664005 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 20
15663948 GATCAGTTGG
15663958 ACCTTT-GATTAATTAACAT
1 ACCTTTGGATTAATTAACAT
15663977 ACCTTTTTTGGATTAATTAACAT
1 ACC---TTTGGATTAATTAACAT
15664000 ACCTTT
1 ACCTTT
15664006 TTTGACTGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
19 3 0.12
20 3 0.12
22 3 0.12
23 16 0.64
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (20 bp):
ACCTTTGGATTAATTAACAT
Found at i:15663990 original size:23 final size:23
Alignment explanation
Indices: 15663964--15664009 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
15663954 TTGGACCTTT
15663964 GATTAATTAACATACCTTTTTTG
1 GATTAATTAACATACCTTTTTTG
15663987 GATTAATTAACATACCTTTTTTG
1 GATTAATTAACATACCTTTTTTG
15664010 ACTGACCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.48
Consensus pattern (23 bp):
GATTAATTAACATACCTTTTTTG
Found at i:15667135 original size:8 final size:8
Alignment explanation
Indices: 15667117--15667159 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
15667107 AAATTTTTCA
15667117 TTTAAACAT
1 TTTAAA-AT
15667126 TTTAAAAT
1 TTTAAAAT
15667134 TTTAAAAAT
1 TTT-AAAAT
*
15667143 TTTAAAAA
1 TTTAAAAT
*
15667151 TGTAAAAT
1 TTTAAAAT
15667159 T
1 T
15667160 GCATTTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
8 16 0.53
9 14 0.47
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (8 bp):
TTTAAAAT
Found at i:15667139 original size:17 final size:17
Alignment explanation
Indices: 15667117--15667149 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15667107 AAATTTTTCA
*
15667117 TTTAAACATTTTAAAAT
1 TTTAAAAATTTTAAAAT
15667134 TTTAAAAATTTTAAAA
1 TTTAAAAATTTTAAAA
15667150 ATGTAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTAAAAATTTTAAAAT
Found at i:15667156 original size:17 final size:17
Alignment explanation
Indices: 15667119--15667157 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
15667109 ATTTTTCATT
* * *
15667119 TAAACATTTTAAAATTT
1 TAAAAATTTTAAAAATG
15667136 TAAAAATTTTAAAAATG
1 TAAAAATTTTAAAAATG
15667153 TAAAA
1 TAAAA
15667158 TTGCATTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (17 bp):
TAAAAATTTTAAAAATG
Found at i:15673491 original size:15 final size:14
Alignment explanation
Indices: 15673456--15673496 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
15673446 GAAAAGTAAT
15673456 TCATTTTTCAGAAA
1 TCATTTTTCAGAAA
*
15673470 TCATTTTTTAGAAA
1 TCATTTTTCAGAAA
15673484 TCATTTTTCAGAA
1 TCATTTTTCAGAA
15673497 GCTATTTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.46
Consensus pattern (14 bp):
TCATTTTTCAGAAA
Found at i:15676772 original size:30 final size:30
Alignment explanation
Indices: 15676736--15676802 Score: 100
Period size: 30 Copynumber: 2.2 Consensus size: 30
15676726 AAAGCGATAA
*
15676736 TTTTGGACACTTTAAAGGC-AAAACAGTAAT
1 TTTTGGACAC-TTAAAGGCAAAAAAAGTAAT
*
15676766 TTTTGGACACTTAAGGGCAAAAAAAGTAAT
1 TTTTGGACACTTAAAGGCAAAAAAAGTAAT
15676796 TTTTGGA
1 TTTTGGA
15676803 TATTCGAGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (30 bp):
TTTTGGACACTTAAAGGCAAAAAAAGTAAT
Found at i:15676823 original size:29 final size:30
Alignment explanation
Indices: 15676791--15677151 Score: 195
Period size: 29 Copynumber: 12.3 Consensus size: 30
15676781 GGCAAAAAAA
*
15676791 GTAATTTTTGGATA-TTCGAGGGTAAAATG
1 GTAATTTTTGGAAAGTTCGAGGGTAAAATG
* ***
15676820 GTAATTTTTGGAAA-CTCGAGAACAAAAAT-
1 GTAATTTTTGGAAAGTTCGAG-GGTAAAATG
* * *
15676849 GTAATTTTTAGACA-TCCGAGGGTAAAATG
1 GTAATTTTTGGAAAGTTCGAGGGTAAAATG
* * **
15676878 GTAATTTTTGG-ATGTT-TAGGGGTAAAAAC
1 GTAATTTTTGGAAAGTTCGA-GGGTAAAATG
*
15676907 GT-ATTTTTGGAAAGTTC-AAGGTCAAAAAT-
1 GTAATTTTTGGAAAGTTCGAGGGT--AAAATG
* *
15676936 GTAATTTTTGTAAAGTTTCG-GGGTTAAATG
1 GTAATTTTTGGAAAG-TTCGAGGGTAAAATG
* *
15676966 GTAATTTTTTG-AAGTTCGAGGGCAAAAAT-
1 GTAATTTTTGGAAAGTTCGAGGG-TAAAATG
* * *
15676995 GTGATTTTTGGAAGGTTCAAGGGTAAAATG
1 GTAATTTTTGGAAAGTTCGAGGGTAAAATG
* * *
15677025 GTAATTTTTGG-AAGTTTGGGGGCAAAAAT-
1 GTAATTTTTGGAAAGTTCGAGGG-TAAAATG
** *
15677054 GTAATTTTTGG-AAGTTTAAGGGCAAAAAT-
1 GTAATTTTTGGAAAGTTCGAGGG-TAAAATG
* * *
15677083 ATAATTTTTATG-AAGTTCAAGGGTCAAAAT-
1 GTAATTTTT-GGAAAGTTCGAGGGT-AAAATG
* * *
15677113 GCAATTTTTGAAAAGTT-TAGGGTTAAAAT-
1 GTAATTTTTGGAAAGTTCGAGGG-TAAAATG
15677142 GTAATTTTTG
1 GTAATTTTTG
15677152 AGAAGTTTAG
Statistics
Matches: 259, Mismatches: 52, Indels: 42
0.73 0.15 0.12
Matches are distributed among these distances:
28 21 0.08
29 146 0.56
30 86 0.33
31 6 0.02
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (30 bp):
GTAATTTTTGGAAAGTTCGAGGGTAAAATG
Found at i:15676981 original size:59 final size:57
Alignment explanation
Indices: 15676872--15677158 Score: 240
Period size: 59 Copynumber: 4.9 Consensus size: 57
15676862 ATCCGAGGGT
* * * *
15676872 AAAATGGTAATTTTTGGATGTTT-AGGGGTAAAAACGT-ATTTTTGGAAAGTTCAAGGTCA
1 AAAAT-GTAATTTTTGAAAGTTTCA-GGGT-AAAATGTAATTTTTGG-AAGTTCAAGGGCA
* * * *
15676931 AAAATGTAATTTTTGTAAAGTTTCGGGGTTAAATGGTAATTTTTTGAAGTTCGAGGGCA
1 AAAATGTAATTTTTG-AAAGTTTCAGGGTAAAAT-GTAATTTTTGGAAGTTCAAGGGCA
* * * ***
15676990 AAAATGTGATTTTTGGAAGGTTCAAGGGTAAAATGGTAATTTTTGGAAGTTTGGGGGCA
1 AAAATGTAATTTTTGAAAGTTTC-AGGGTAAAAT-GTAATTTTTGGAAGTTCAAGGGCA
* * * * *
15677049 AAAATGTAATTTTTGGAAGTTTAAGGGCAAAAATATAATTTTTATGAAGTTCAAGGGTC-
1 AAAATGTAATTTTTGAAAGTTTCAGGG-TAAAATGTAATTTTT-GGAAGTTCAAGGG-CA
*
15677108 AAAATGCAATTTTTGAAAAGTTT-AGGGTTAAAATGTAATTTTTGAGAAGTT
1 AAAATGTAATTTTTG-AAAGTTTCAGGG-TAAAATGTAATTTTTG-GAAGTT
15677159 TAGGGGTCAA
Statistics
Matches: 187, Mismatches: 31, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
58 31 0.17
59 142 0.76
60 14 0.07
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (57 bp):
AAAATGTAATTTTTGAAAGTTTCAGGGTAAAATGTAATTTTTGGAAGTTCAAGGGCA
Found at i:15676993 original size:88 final size:85
Alignment explanation
Indices: 15676868--15677163 Score: 285
Period size: 88 Copynumber: 3.4 Consensus size: 85
15676858 AGACATCCGA
* * * *
15676868 GGGTAAAATGGTAATTTTTGGATGTTTAGGGGTAAAAACGT-ATTTTTGGAAAGTTCAA-GGTCA
1 GGGTAAAAT-GTAATTTTTGGAAG-TTAAGGGCAAAAATGTAATTTTTGGAAAGTTCAAGGGTC-
15676931 AAAATGTAATTTTTGTAAAGTTTCG
63 AAAATGTAATTTTTG-AAAGTTT-G
* * * * *
15676956 GGGTTAAATGGTAATTTTTTGAAGTTCGAGGGCAAAAATGTGATTTTTGGAAGGTTCAAGGGT-A
1 GGGTAAAAT-GTAATTTTTGGAAGTT-AAGGGCAAAAATGTAATTTTTGGAAAGTTCAAGGGTCA
*
15677020 AAATGGTAATTTTTGGAAGTTTGG
64 AAAT-GTAATTTTTGAAAGTTT-G
* * *
15677044 GGGCAAAAATGTAATTTTTGGAAGTTTAAGGGCAAAAATATAATTTTTATG-AAGTTCAAGGGTC
1 GGG-TAAAATGTAATTTTTGGAAG-TTAAGGGCAAAAATGTAATTTTT-GGAAAGTTCAAGGGTC
*
15677108 AAAATGCAATTTTTGAAAAGTTTAG
63 AAAATGTAATTTTTG-AAAGTTT-G
* *
15677133 GGTTAAAATGTAATTTTTGAGAAGTTTAGGG
1 GGGTAAAATGTAATTTTTG-GAAGTTAAGGG
15677164 GTCAAAATAT
Statistics
Matches: 174, Mismatches: 24, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
87 2 0.01
88 118 0.68
89 51 0.29
90 3 0.02
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (85 bp):
GGGTAAAATGTAATTTTTGGAAGTTAAGGGCAAAAATGTAATTTTTGGAAAGTTCAAGGGTCAAA
ATGTAATTTTTGAAAGTTTG
Found at i:15677152 original size:29 final size:28
Alignment explanation
Indices: 15676867--15677193 Score: 221
Period size: 29 Copynumber: 11.1 Consensus size: 28
15676857 TAGACATCCG
*
15676867 AGGGT-AAAATGGTAATTTTTGGATGTTT
1 AGGGTAAAAAT-GTAATTTTTGGAAGTTT
* *
15676895 AGGGGTAAAAACGT-ATTTTTGGAAAGTTC
1 A-GGGTAAAAATGTAATTTTTGG-AAGTTT
* *
15676924 AAGGTCAAAAATGTAATTTTTGTAAAGTTT
1 AGGGT-AAAAATGTAATTTTTG-GAAGTTT
* * * *
15676954 CGGGGT-TAAATGGTAATTTTTTGAAGTTCG
1 -AGGGTAAAAAT-GTAATTTTTGGAAGTT-T
* * *
15676984 AGGGCAAAAATGTGATTTTTGGAAGGTTCA
1 AGGGTAAAAATGTAATTTTTGGAA-GTT-T
15677014 AGGGT-AAAATGGTAATTTTTGGAAGTTT
1 AGGGTAAAAAT-GTAATTTTTGGAAGTTT
* *
15677042 GGGGGCAAAAATGTAATTTTTGGAAGTTT
1 -AGGGTAAAAATGTAATTTTTGGAAGTTT
* * * *
15677071 AAGGGCAAAAATATAATTTTTATGAAGTTCA
1 -AGGGTAAAAATGTAATTTTT-GGAAGTT-T
* * *
15677102 AGGGTCAAAATGCAATTTTTGAAAAGTTT
1 AGGGTAAAAATGTAATTTTTG-GAAGTTT
*
15677131 AGGGTTAAAATGTAATTTTTGAGAAGTTT
1 AGGGTAAAAATGTAATTTTTG-GAAGTTT
* * * *
15677160 AGGGGTCAAAATATGATTTTTAGATAGTTT
1 A-GGGTAAAAATGTAATTTTTGGA-AGTTT
15677190 AGGG
1 AGGG
15677194 ACCTCTTGGG
Statistics
Matches: 237, Mismatches: 43, Indels: 37
0.75 0.14 0.12
Matches are distributed among these distances:
28 12 0.05
29 119 0.50
30 103 0.43
31 3 0.01
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (28 bp):
AGGGTAAAAATGTAATTTTTGGAAGTTT
Found at i:15677179 original size:59 final size:59
Alignment explanation
Indices: 15676926--15677193 Score: 171
Period size: 59 Copynumber: 4.5 Consensus size: 59
15676916 GAAAGTTCAA
* * * *
15676926 GGTCAAAA-ATGTAATTTTTGTAAAGTTTCGGGGTT-AAATGGTAATTTTTTGAAG-TTCGAG
1 GGTCAAAATATG--ATTTTTGAAAAGTTT-AGGGTTAAAATGGTAATTTTTAGAAGTTTAG-G
* * * * *
15676986 GG-CAAAAATGTGATTTTTGGAAGGTTCAAGGG-TAAAATGGTAATTTTTGGAAGTTT-GG
1 GGTC-AAAATATGATTTTTGAAAAGTT-TAGGGTTAAAATGGTAATTTTTAGAAGTTTAGG
* * ** * * *
15677044 GGGCAAAA-ATGTAATTTTTG-GAAGTTTAAGGGCAAAAAT-ATAATTTTTATGAAGTTCAAG
1 GGTCAAAATATG--ATTTTTGAAAAGTTT-AGGGTTAAAATGGTAATTTTTA-GAAGTTTAGG
***
15677104 GGTCAAAATGCAATTTTTGAAAAGTTTAGGGTTAAAAT-GTAATTTTTGAGAAGTTTAGG
1 GGTCAAAATATGATTTTTGAAAAGTTTAGGGTTAAAATGGTAATTTTT-AGAAGTTTAGG
*
15677163 GGTCAAAATATGATTTTT-AGATAGTTTAGGG
1 GGTCAAAATATGATTTTTGA-AAAGTTTAGGG
15677194 ACCTCTTGGG
Statistics
Matches: 163, Mismatches: 29, Indels: 33
0.72 0.13 0.15
Matches are distributed among these distances:
57 2 0.01
58 25 0.15
59 111 0.68
60 23 0.14
61 2 0.01
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (59 bp):
GGTCAAAATATGATTTTTGAAAAGTTTAGGGTTAAAATGGTAATTTTTAGAAGTTTAGG
Done.