Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 63 of 132
Found at i:17715343 original size:20 final size:21
Alignment explanation
Indices: 17715307--17715356 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 21
17715297 ATTGGCATGG
*
17715307 TTTATATTAAGTGT-AAATTGA
1 TTTA-ATTAAGTGTAAAAATGA
17715328 TTTAATTAAGAT-TAAAAATGA
1 TTTAATTAAG-TGTAAAAATGA
17715349 -TTAATTAA
1 TTTAATTAA
17715357 AGCTTAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (21 bp):
TTTAATTAAGTGTAAAAATGA
Found at i:17720271 original size:20 final size:21
Alignment explanation
Indices: 17720232--17720274 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
17720222 TAAATACATA
* *
17720232 AATTATATATTTTTATTATAT
1 AATTATATAATTTAATTATAT
17720253 AATTAT-TAATTTAATTATAT
1 AATTATATAATTTAATTATAT
17720273 AA
1 AA
17720275 AAGATGGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
AATTATATAATTTAATTATAT
Found at i:17720553 original size:203 final size:207
Alignment explanation
Indices: 17720167--17720768 Score: 752
Period size: 203 Copynumber: 2.8 Consensus size: 207
17720157 TATAAAAAAC
* *
17720167 ATATAAAAGAAATTAATTGAT-ATTTTAAAAAAATAAAATATATTTAACATGATGATAAATACAT
1 ATATAAAAG-AATTAGTTGATAATTTT-AAAAAATAAAATATATTTAACATAATGATAAATAC--
* * *
17720231 AAATTATATATTTTTATTATATAATTATTAATTTAATTATATAAAAGATGGAAATATTAATTTTA
62 --A--ATATA---TGATTATATAATTATTAATTTAA-T-TATAAAAGAAGGAATTATTAATTTTA
* * * *
17720296 AATGTTTTAAAGAGAATGAGATATATACAATTACATATTTATTATTTAATTTTATAAATAA-ACG
118 AATATTTTTAAGATAATGAGATATATACAATTACATATTTATTATTTAATTTTATAAATAACA-A
17720360 AATTATTAAAAAAACTTGAAAATAAT
182 AATTATTAAAAAAACTTGAAAATAAT
* * **
17720386 ATATAAAAGAAATTAGTTGATATTTTTTAAAAATTTAATATATTTAACATAATGATAAATAC-A-
1 ATATAAAAG-AATTAGTTGATAATTTTAAAAAATAAAATATATTTAACATAATGATAAATACAAT
*
17720449 A-A-GA-T-TATAATTATTAATTTAATTATAAAGGAAGGAATTATTAATTTTAAATATTTTTTAA
65 ATATGATTATATAATTATTAATTTAATTATAAAAGAAGGAATTATTAATTTTAAATA-TTTTTAA
* * *
17720510 GATAATAAGATATATATAATTATATATTTATTATTTAATTTTATAAATAACAAAATTATTAAAAA
129 GATAATGAGATATATACAATTACATATTTATTATTTAATTTTATAAATAACAAAATTATTAAAAA
17720575 AACTTGAAAATAAT
194 AACTTGAAAATAAT
17720589 ATATAAAAGAATTAGTTGATAATTTTAAAAAATAAAATATATTTAACATAATGATAAATACAAAA
1 ATATAAAAGAATTAGTTGATAATTTTAAAAAATAAAATATATTTAACATAATGATAAATAC---A
* *
17720654 TTATATATTTTATTATATAATTATTAATTTAATTATTTAAAAGAAAGAATTATTAATTTTAAATA
63 --ATATA--TGATTATATAATTATTAATTTAATTA--TAAAAGAAGGAATTATTAATTTTAAATA
17720719 TTTTTAAGATAATGAGATATATACAATTACATATTTATTATTTAATTTTA
122 TTTTTAAGATAATGAGATATATACAATTACATATTTATTATTTAATTTTA
17720769 AATATTTTTA
Statistics
Matches: 338, Mismatches: 27, Indels: 39
0.84 0.07 0.10
Matches are distributed among these distances:
202 74 0.22
203 88 0.26
204 18 0.05
205 1 0.00
206 1 0.00
208 1 0.00
209 1 0.00
210 2 0.01
211 1 0.00
212 1 0.00
213 1 0.00
214 1 0.00
215 20 0.06
216 47 0.14
217 26 0.08
219 51 0.15
220 4 0.01
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (207 bp):
ATATAAAAGAATTAGTTGATAATTTTAAAAAATAAAATATATTTAACATAATGATAAATACAATA
TATGATTATATAATTATTAATTTAATTATAAAAGAAGGAATTATTAATTTTAAATATTTTTAAGA
TAATGAGATATATACAATTACATATTTATTATTTAATTTTATAAATAACAAAATTATTAAAAAAA
CTTGAAAATAAT
Found at i:17722634 original size:10 final size:10
Alignment explanation
Indices: 17722619--17722648 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
17722609 AACTTCTTGG
17722619 AATGATATCT
1 AATGATATCT
17722629 AATGATATCT
1 AATGATATCT
17722639 AATGATATCT
1 AATGATATCT
17722649 TTAGAATTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (10 bp):
AATGATATCT
Found at i:17723855 original size:26 final size:25
Alignment explanation
Indices: 17723826--17723878 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
17723816 GAATATTTCA
*
17723826 TTAATAATTTGAGTTTATTTAATTAT
1 TTAATAA-TTGAGTTAATTTAATTAT
* *
17723852 TTAATGATTGAGTTAATTTTATTAT
1 TTAATAATTGAGTTAATTTAATTAT
17723877 TT
1 TT
17723879 GGTCTTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.58
Consensus pattern (25 bp):
TTAATAATTGAGTTAATTTAATTAT
Found at i:17727297 original size:28 final size:28
Alignment explanation
Indices: 17727257--17727366 Score: 202
Period size: 28 Copynumber: 3.9 Consensus size: 28
17727247 GTTATTCGAT
*
17727257 TTACTCCCTGTTGACCTAAAGGTCATGC
1 TTACTCCCTGTTGACCCAAAGGTCATGC
17727285 TTACTCCCTGTTGACCCAAAGGTCATGC
1 TTACTCCCTGTTGACCCAAAGGTCATGC
17727313 TTACTCCCTGTTGACCCAAAGGTCATGC
1 TTACTCCCTGTTGACCCAAAGGTCATGC
*
17727341 TTACTCCCTGTTGACCTAAAGGTCAT
1 TTACTCCCTGTTGACCCAAAGGTCAT
17727367 ACCTGTTACC
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 80 1.00
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.31
Consensus pattern (28 bp):
TTACTCCCTGTTGACCCAAAGGTCATGC
Found at i:17732539 original size:28 final size:28
Alignment explanation
Indices: 17732507--17732560 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
17732497 GTTATCTAAT
17732507 TTACTCCTTGTTGACCCAAAGGTCATGC
1 TTACTCCTTGTTGACCCAAAGGTCATGC
*
17732535 TTACTCCTTGTTGACCTAAAGGTCAT
1 TTACTCCTTGTTGACCCAAAGGTCAT
17732561 ACCTGTTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (28 bp):
TTACTCCTTGTTGACCCAAAGGTCATGC
Found at i:17736887 original size:23 final size:23
Alignment explanation
Indices: 17736868--17737096 Score: 314
Period size: 23 Copynumber: 10.0 Consensus size: 23
17736858 TCCATTTACA
17736868 CATAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* *
17736891 CAGATATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* *
17736914 CATAAATCATATTAACATTTAAG
1 CATAAATCACATTAATATTTAAG
*
17736937 CATAATTCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
*
17736960 CACAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
*
17736983 CACAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* * * *
17737006 TATAAATCATATTAACATTTAAC
1 CATAAATCACATTAATATTTAAG
* *
17737029 CATAAATCACATTCATATTTAAC
1 CATAAATCACATTAATATTTAAG
**
17737052 CACGAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
*
17737075 CATAAATCATATTAATATTTAA
1 CATAAATCACATTAATATTTAA
17737097 TGCACATTTA
Statistics
Matches: 179, Mismatches: 27, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 179 1.00
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (23 bp):
CATAAATCACATTAATATTTAAG
Found at i:17738347 original size:31 final size:30
Alignment explanation
Indices: 17738280--17738348 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
17738270 ACGATAACGT
* *
17738280 AAGTGACTAAAACGTGACATTTCAAACATA
1 AAGTGACTAAAACGTAACATGTCAAACATA
*
17738310 AA-TGACTAAAACGTAACCTGAGTCAAACA-A
1 AAGTGACTAAAACGTAACAT--GTCAAACATA
17738340 AAGTGACTA
1 AAGTGACTA
17738349 TTTTGATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
29 15 0.45
30 5 0.15
31 13 0.39
ACGTcount: A:0.48, C:0.17, G:0.14, T:0.20
Consensus pattern (30 bp):
AAGTGACTAAAACGTAACATGTCAAACATA
Found at i:17746643 original size:22 final size:21
Alignment explanation
Indices: 17746618--17746677 Score: 54
Period size: 23 Copynumber: 2.8 Consensus size: 21
17746608 AATAAAATGA
17746618 ATATATAAATAATTTAAAACTT
1 ATATATAAATAATTTAAAA-TT
*
17746640 ATATAATACAA-ATTATTAAAATT
1 ATAT-ATA-AATAAT-TTAAAATT
17746663 ATA-A-AAATAATTTAA
1 ATATATAAATAATTTAA
17746678 GATAAATTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
19 6 0.19
20 3 0.09
21 1 0.03
22 4 0.12
23 10 0.31
24 8 0.25
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATATAAATAATTTAAAATT
Found at i:17755106 original size:52 final size:50
Alignment explanation
Indices: 17755032--17755166 Score: 164
Period size: 51 Copynumber: 2.6 Consensus size: 50
17755022 TTTCATTTAA
* * *
17755032 TACTCACGATGACATATTGTCATTGGACCATTTAATTCGT-CATGGATTCATT
1 TACTCACGATGACAT-TAGTCATTGGACC-TTTAATCCGTAAAT-GATTCATT
* **
17755084 TACTCACGATGACACTTAGTCATCGGTTCTTTAATCCGTAAATGATTCATT
1 TACTCACGATGACA-TTAGTCATTGGACCTTTAATCCGTAAATGATTCATT
17755135 TACTCACGATGACATTTAGTCATTGGACCTTT
1 TACTCACGATGACA-TTAGTCATTGGACCTTT
17755167 TACTCGCATC
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
51 45 0.63
52 25 0.35
53 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (50 bp):
TACTCACGATGACATTAGTCATTGGACCTTTAATCCGTAAATGATTCATT
Found at i:17758571 original size:51 final size:51
Alignment explanation
Indices: 17758465--17758624 Score: 223
Period size: 51 Copynumber: 3.1 Consensus size: 51
17758455 TTTCATTTAA
* * * * * *
17758465 TACTCACAATGACA-TATTGTCATCAGACCATTTAATTCGTCATGGATTCATT
1 TACTCACGATGACACT-TAGTCATCGGACC-TTTAATCCGTAAAGGATTCATT
*
17758517 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTGAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
*
17758568 TACTCACGATGACACTTAGTTATCGGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
17758619 TACTCA
1 TACTCA
17758625 TGGGGTAAGT
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
51 74 0.75
52 24 0.24
53 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (51 bp):
TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
Found at i:17758815 original size:51 final size:51
Alignment explanation
Indices: 17758709--17758894 Score: 255
Period size: 51 Copynumber: 3.6 Consensus size: 51
17758699 TTTCATTTAA
* * * * * *
17758709 TACTCACGATGACATATTGTTATCGGACCATTTAATTCGTCATGGATTCATT
1 TACTCACGATGACACATAGTCATCGGACC-TTTAATCCGTAAAGGATTCATT
17758761 TACTCACGATGACACATAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACATAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
** *
17758812 TACTCACGATGACAGTTAGTTATCGGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACATAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
* * *
17758863 TACTCATGATGACACTTAGTCACCGGACCTTT
1 TACTCACGATGACACATAGTCATCGGACCTTT
17758895 CGTTTATAGC
Statistics
Matches: 121, Mismatches: 13, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
51 95 0.79
52 26 0.21
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.33
Consensus pattern (51 bp):
TACTCACGATGACACATAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
Found at i:17758833 original size:244 final size:245
Alignment explanation
Indices: 17758388--17758870 Score: 833
Period size: 244 Copynumber: 2.0 Consensus size: 245
17758378 TCTGGGTTAG
* * *
17758388 GTTTCGCTCGCATTTATTTCTCACGACAACACAAAGTCATCGGACCCTTGTTCCACATAAGAACT
1 GTTTCACTCGCATTTATTTCTCACAACAACACAAAGTCATCAGACCCTTGTTCCACATAAGAACT
17758453 CATTTCATTTAATACTCACAATGACATATTGTCATCAGACCATTTAATTCGTCATGGATTCATTT
66 CATTTCATTTAATACTCACAATGACATATTGTCATCAGACCATTTAATTCGTCATGGATTCATTT
* *
17758518 ACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTGAAGGATTCATTTACTCACGATGACAC
131 ACTCACGATGACACATAGTCATCGGACCTTTAATCCGTAAAGGATTCATTTACTCACGATGACAC
17758583 TTAGTTATCGGACCTTTAATCCGTAAAGGATTCATTTACTCATGGGGTAA
196 TTAGTTATCGGACCTTTAATCCGTAAAGGATTCATTTACTCATGGGGTAA
** * * *
17758633 GTTTCACTCGCATTT-TTTCTCACAATGACATAAAGTCATCAGACCCTTGTTCCGCATAGGAACT
1 GTTTCACTCGCATTTATTTCTCACAACAACACAAAGTCATCAGACCCTTGTTCCACATAAGAACT
* * *
17758697 CATTTCATTTAATACTCACGATGACATATTGTTATCGGACCATTTAATTCGTCATGGATTCATTT
66 CATTTCATTTAATACTCACAATGACATATTGTCATCAGACCATTTAATTCGTCATGGATTCATTT
*
17758762 ACTCACGATGACACATAGTCATCGGACCTTTAATCCGTAAAGGATTCATTTACTCACGATGACAG
131 ACTCACGATGACACATAGTCATCGGACCTTTAATCCGTAAAGGATTCATTTACTCACGATGACAC
17758827 TTAGTTATCGGACCTTTAATCCGTAAAGGATTCATTTACTCATG
196 TTAGTTATCGGACCTTTAATCCGTAAAGGATTCATTTACTCATG
17758871 ATGACACTTA
Statistics
Matches: 224, Mismatches: 14, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
244 210 0.94
245 14 0.06
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.34
Consensus pattern (245 bp):
GTTTCACTCGCATTTATTTCTCACAACAACACAAAGTCATCAGACCCTTGTTCCACATAAGAACT
CATTTCATTTAATACTCACAATGACATATTGTCATCAGACCATTTAATTCGTCATGGATTCATTT
ACTCACGATGACACATAGTCATCGGACCTTTAATCCGTAAAGGATTCATTTACTCACGATGACAC
TTAGTTATCGGACCTTTAATCCGTAAAGGATTCATTTACTCATGGGGTAA
Found at i:17758890 original size:102 final size:103
Alignment explanation
Indices: 17758709--17758894 Score: 286
Period size: 102 Copynumber: 1.8 Consensus size: 103
17758699 TTTCATTTAA
* * * *
17758709 TACTCACGATGACATATTGTTATCGGACCATTTAATTCGTCATGGATTCATTTACTCACGATGAC
1 TACTCACGATGACATATAGTTATCGGACCATTTAATCCGTAAAGGATTCATTTACTCACGATGAC
*
17758774 ACATAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
66 ACATAGTCACCGGACCTTTAATCCGTAAAGGATTCATT
*
17758812 TACTCACGATGACAGT-TAGTTATCGGACC-TTTAATCCGTAAAGGATTCATTTACTCATGATGA
1 TACTCACGATGACA-TATAGTTATCGGACCATTTAATCCGTAAAGGATTCATTTACTCACGATGA
*
17758875 CACTTAGTCACCGGACCTTT
65 CACATAGTCACCGGACCTTT
17758895 CGTTTATAGC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
102 48 0.64
103 26 0.35
104 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.33
Consensus pattern (103 bp):
TACTCACGATGACATATAGTTATCGGACCATTTAATCCGTAAAGGATTCATTTACTCACGATGAC
ACATAGTCACCGGACCTTTAATCCGTAAAGGATTCATT
Found at i:17767543 original size:36 final size:36
Alignment explanation
Indices: 17767496--17767720 Score: 290
Period size: 36 Copynumber: 6.2 Consensus size: 36
17767486 CTATTGTGAA
17767496 AGTAAATATGTAGGTATGTTATTCATGCCATGAGAC
1 AGTAAATATGTAGGTATGTTATTCATGCCATGAGAC
* *
17767532 AGTAAATATGTAGGTATGTTATTCATGCCATGTGAT
1 AGTAAATATGTAGGTATGTTATTCATGCCATGAGAC
* * * * * *
17767568 AATAAATGTGTGGGTATATTATTCATGTCATGAGAT
1 AGTAAATATGTAGGTATGTTATTCATGCCATGAGAC
*
17767604 AGTAAATATGTAGGTATGTTATTCATGCCATGTGAC
1 AGTAAATATGTAGGTATGTTATTCATGCCATGAGAC
* * * *
17767640 AGTAAATATGTGGGTGTCTTATCCATGCCATGAGAC
1 AGTAAATATGTAGGTATGTTATTCATGCCATGAGAC
* *
17767676 AGTAAATATGT-GAGTATGTTATTCATGCCTTGTGAC
1 AGTAAATATGTAG-GTATGTTATTCATGCCATGAGAC
*
17767712 AGTGAATAT
1 AGTAAATAT
17767721 ATTGTGCTAA
Statistics
Matches: 162, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
35 1 0.01
36 161 0.99
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (36 bp):
AGTAAATATGTAGGTATGTTATTCATGCCATGAGAC
Found at i:17767711 original size:72 final size:72
Alignment explanation
Indices: 17767490--17767720 Score: 329
Period size: 72 Copynumber: 3.2 Consensus size: 72
17767480 TAATGACTAT
* * *
17767490 TGTGAAAGTAAATATGTAGGTATGTTATTCATGCCATGAGACAGTAAATATGTAGGTATGTTATT
1 TGTGACAGTAAATATGTGGGTATATTATTCATGCCATGAGACAGTAAATATGTAGGTATGTTATT
17767555 CATGCCA
66 CATGCCA
* * * * *
17767562 TGTGATAATAAATGTGTGGGTATATTATTCATGTCATGAGATAGTAAATATGTAGGTATGTTATT
1 TGTGACAGTAAATATGTGGGTATATTATTCATGCCATGAGACAGTAAATATGTAGGTATGTTATT
17767627 CATGCCA
66 CATGCCA
* * *
17767634 TGTGACAGTAAATATGTGGGTGTCTTATCCATGCCATGAGACAGTAAATATGT-GAGTATGTTAT
1 TGTGACAGTAAATATGTGGGTATATTATTCATGCCATGAGACAGTAAATATGTAG-GTATGTTAT
*
17767698 TCATGCCT
65 TCATGCCA
*
17767706 TGTGACAGTGAATAT
1 TGTGACAGTAAATAT
17767721 ATTGTGCTAA
Statistics
Matches: 141, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
71 1 0.01
72 140 0.99
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (72 bp):
TGTGACAGTAAATATGTGGGTATATTATTCATGCCATGAGACAGTAAATATGTAGGTATGTTATT
CATGCCA
Found at i:17768419 original size:23 final size:23
Alignment explanation
Indices: 17768115--17768412 Score: 418
Period size: 23 Copynumber: 13.0 Consensus size: 23
17768105 ACTAAATGTG
*
17768115 TTAAATATTAATGTGATTTATGT
1 TTAAATATTAATGTGATTTATGC
* *
17768138 TTAAATATTTATGT-AGTTTGTGC
1 TTAAATATTAATGTGA-TTTATGC
17768161 TTAAATATTAATGTGATTTATGC
1 TTAAATATTAATGTGATTTATGC
*
17768184 TTAAATATTAATGTGATTTATGT
1 TTAAATATTAATGTGATTTATGC
* *
17768207 TTAAATATTAATGTGATTTGTGT
1 TTAAATATTAATGTGATTTATGC
*
17768230 TTAATTATTAATGTGATTTATGC
1 TTAAATATTAATGTGATTTATGC
* *
17768253 TTAAATGTTAATATGATTTATGC
1 TTAAATATTAATGTGATTTATGC
* * *
17768276 TTAAATATTAATATGATCTATTC
1 TTAAATATTAATGTGATTTATGC
* * *
17768299 TTAAATACTAATTTGATTTGTGC
1 TTAAATATTAATGTGATTTATGC
17768322 TTAAATATTAATGTGATTTATGC
1 TTAAATATTAATGTGATTTATGC
* *
17768345 TTAAATGTTAATATGATTTATGC
1 TTAAATATTAATGTGATTTATGC
*
17768368 TTAAACATTAATGTGATTTATGC
1 TTAAATATTAATGTGATTTATGC
17768391 TTAAATATTAATGTGATTTATG
1 TTAAATATTAATGTGATTTATG
17768413 TGTAAATGGA
Statistics
Matches: 243, Mismatches: 30, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
22 1 0.00
23 241 0.99
24 1 0.00
ACGTcount: A:0.34, C:0.04, G:0.13, T:0.49
Consensus pattern (23 bp):
TTAAATATTAATGTGATTTATGC
Found at i:17769811 original size:21 final size:21
Alignment explanation
Indices: 17769762--17769831 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
17769752 TCAAACATGG
* * *
17769762 CCGTGTGACTAATCCACACGC
1 CCGTGTGGCTACTTCACACGC
17769783 CCGTGTGGCTACTTCACACGC
1 CCGTGTGGCTACTTCACACGC
*
17769804 CCGTGTGGCTACTTCACATGC
1 CCGTGTGGCTACTTCACACGC
*
17769825 TCGTGTG
1 CCGTGTG
17769832 CTCACCTGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.16, C:0.34, G:0.24, T:0.26
Consensus pattern (21 bp):
CCGTGTGGCTACTTCACACGC
Found at i:17770927 original size:26 final size:26
Alignment explanation
Indices: 17770898--17771022 Score: 81
Period size: 26 Copynumber: 4.8 Consensus size: 26
17770888 GCCTACTAGT
* *
17770898 TAAACATCGGCTCAAAGCTTGATAAA
1 TAAACACCGACTCAAAGCTTGATAAA
* * *
17770924 TAAAAACCGACTCAAGGCCT-ATTAAA
1 TAAACACCGACTCAAAGCTTGA-TAAA
* * * **
17770950 TAATCACCGACTCTAAGCTTGCTAGT
1 TAAACACCGACTCAAAGCTTGATAAA
*** *
17770976 TAAACATTTACTCAAAGCTTGTTAAA
1 TAAACACCGACTCAAAGCTTGATAAA
* * *
17771002 TAATCACCGGCTCTAAGCTTG
1 TAAACACCGACTCAAAGCTTG
17771023 CTAGTTAAAC
Statistics
Matches: 70, Mismatches: 27, Indels: 4
0.69 0.27 0.04
Matches are distributed among these distances:
25 1 0.01
26 69 0.99
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (26 bp):
TAAACACCGACTCAAAGCTTGATAAA
Found at i:17770968 original size:52 final size:52
Alignment explanation
Indices: 17770879--17771022 Score: 126
Period size: 52 Copynumber: 2.8 Consensus size: 52
17770869 AAGTAATCAT
* ** * * * *
17770879 CGACTCAAAGCCTACTAGTTAAACATCGGCTCAAAGCTTGATAAATAAAAAC
1 CGACTCAAAGCCTATTAAATAATCACCGACTCTAAGCTTGATAAATAAAAAC
* * ** * *
17770931 CGACTCAAGGCCTATTAAATAATCACCGACTCTAAGCTTGCTAGTTAAACAT
1 CGACTCAAAGCCTATTAAATAATCACCGACTCTAAGCTTGATAAATAAAAAC
** * * *
17770983 TTACTCAAAGCTTGTTAAATAATCACCGGCTCTAAGCTTG
1 CGACTCAAAGCCTATTAAATAATCACCGACTCTAAGCTTG
17771023 CTAGTTAAAC
Statistics
Matches: 73, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (52 bp):
CGACTCAAAGCCTATTAAATAATCACCGACTCTAAGCTTGATAAATAAAAAC
Found at i:17780177 original size:19 final size:19
Alignment explanation
Indices: 17780153--17780189 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
17780143 AATTGATAAT
17780153 AAAAATAAA-GTGCAAAAAC
1 AAAAATAAACGT-CAAAAAC
17780172 AAAAATAAACGTCAAAAA
1 AAAAATAAACGTCAAAAA
17780190 AAGCCATCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.70, C:0.11, G:0.08, T:0.11
Consensus pattern (19 bp):
AAAAATAAACGTCAAAAAC
Found at i:17793084 original size:9 final size:9
Alignment explanation
Indices: 17793016--17793086 Score: 54
Period size: 9 Copynumber: 7.8 Consensus size: 9
17793006 CTCAGACATA
*
17793016 TTTTTATCT
1 TTTTTTTCT
*
17793025 TTTTCTTCT
1 TTTTTTTCT
17793034 TTTTTTTCT
1 TTTTTTTCT
***
17793043 CAATTTTCT
1 TTTTTTTCT
17793052 TTTTTTT-T
1 TTTTTTTCT
**
17793060 TCTTTTCGACT
1 T-TTTT-TTCT
17793071 TTTTTTTCT
1 TTTTTTTCT
17793080 TTTTTTT
1 TTTTTTT
17793087 AAATAATAAA
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
8 2 0.04
9 38 0.83
10 4 0.09
11 2 0.04
ACGTcount: A:0.06, C:0.14, G:0.01, T:0.79
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:17794089 original size:12 final size:11
Alignment explanation
Indices: 17794072--17794108 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
17794062 TTTTTTGAAC
17794072 TTTTCAATTTT
1 TTTTCAATTTT
*
17794083 TTCTTCAAATTT
1 TT-TTCAATTTT
17794095 TTTTCAATTTT
1 TTTTCAATTTT
17794106 TTT
1 TTT
17794109 AAAAACATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTCAATTTT
Found at i:17802383 original size:34 final size:34
Alignment explanation
Indices: 17802339--17802452 Score: 174
Period size: 34 Copynumber: 3.4 Consensus size: 34
17802329 TTCTGAACTG
17802339 ATATGACATTCTGATATGATATATGTTTTTAAAA
1 ATATGACATTCTGATATGATATATGTTTTTAAAA
* *
17802373 ATATGGCATTCTGATCTGATATATGTTTTTAAAA
1 ATATGACATTCTGATATGATATATGTTTTTAAAA
* * **
17802407 ATATGATATTCTGATATGATATATGTTTCTAGTA
1 ATATGACATTCTGATATGATATATGTTTTTAAAA
17802441 ATATGACATTCT
1 ATATGACATTCT
17802453 AATTTATTAT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 71 1.00
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (34 bp):
ATATGACATTCTGATATGATATATGTTTTTAAAA
Found at i:17813623 original size:31 final size:31
Alignment explanation
Indices: 17813585--17813649 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
17813575 CCCATCCTTA
* *
17813585 TTGCCAAATATCTTTCTGGCTATTAATGCCT
1 TTGCCAAATATCTTTCTGGATATCAATGCCT
*
17813616 TTGCCAAATATCTTTCTTGATATCAATGCCT
1 TTGCCAAATATCTTTCTGGATATCAATGCCT
17813647 TTG
1 TTG
17813650 TCTAATTTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.12, T:0.43
Consensus pattern (31 bp):
TTGCCAAATATCTTTCTGGATATCAATGCCT
Found at i:17818303 original size:15 final size:15
Alignment explanation
Indices: 17818285--17818317 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
17818275 TTCTAGATTT
*
17818285 TTTATTAAGCTTATA
1 TTTAATAAGCTTATA
17818300 TTTAATAAGCTTATA
1 TTTAATAAGCTTATA
17818315 TTT
1 TTT
17818318 TTTATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.55
Consensus pattern (15 bp):
TTTAATAAGCTTATA
Found at i:17823589 original size:29 final size:31
Alignment explanation
Indices: 17823557--17823616 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
17823547 GTTAATGGCC
* *
17823557 TAGTGACTT-AATGAAAACTT-TTAATAGTT
1 TAGTCACTTAAATGAAAACTTATGAATAGTT
*
17823586 TAGTCACTTAAATGGAAACTTATGAATAGTT
1 TAGTCACTTAAATGAAAACTTATGAATAGTT
17823617 CAACGATCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 8 0.31
30 10 0.38
31 8 0.31
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (31 bp):
TAGTCACTTAAATGAAAACTTATGAATAGTT
Found at i:17825871 original size:26 final size:26
Alignment explanation
Indices: 17825842--17826035 Score: 129
Period size: 26 Copynumber: 7.5 Consensus size: 26
17825832 GCAAGCTTAA
*
17825842 AGCCGGTGATTATTTAACAAGCTTTG
1 AGCCGGTGATTATTTAACAGGCTTTG
* * ** ** **
17825868 AGCCAGTGTTTAACTAGTAGGCTTAA
1 AGCCGGTGATTATTTAACAGGCTTTG
* *
17825894 AGCCGGTGATTATTTAATAGGCCTTG
1 AGCCGGTGATTATTTAACAGGCTTTG
** * *
17825920 AGCCGGTTTTTATTTATCAGGCTTAG
1 AGCCGGTGATTATTTAACAGGCTTTG
* *
17825946 AGCCAGTGATTATTTAACAAGCTTTG
1 AGCCGGTGATTATTTAACAGGCTTTG
* * ** *
17825972 AGTCGGTGTTTAACTAGCAGGCTTTG
1 AGCCGGTGATTATTTAACAGGCTTTG
* * *
17825998 AGCCGATG-TTGATCTAGCAGGCTTTG
1 AGCCGGTGATT-ATTTAACAGGCTTTG
* *
17826024 AGTCGATGATTA
1 AGCCGGTGATTA
17826036 CTTAGCAAGT
Statistics
Matches: 126, Mismatches: 40, Indels: 4
0.74 0.24 0.02
Matches are distributed among these distances:
25 2 0.02
26 122 0.97
27 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (26 bp):
AGCCGGTGATTATTTAACAGGCTTTG
Found at i:17826001 original size:52 final size:52
Alignment explanation
Indices: 17825821--17825995 Score: 233
Period size: 52 Copynumber: 3.4 Consensus size: 52
17825811 AATGAATACA
* *
17825821 GTGTTTAACTAGCAAGCTTAAAGCCGGTGATTATTTAACAAGCTTTGAGCCA
1 GTGTTTAACTAGCAGGCTTAAAGCCGGTGATTATTTAACAAGCTTTGAGCCG
* * * *
17825873 GTGTTTAACTAGTAGGCTTAAAGCCGGTGATTATTTAATAGGCCTTGAGCCG
1 GTGTTTAACTAGCAGGCTTAAAGCCGGTGATTATTTAACAAGCTTTGAGCCG
* ** * * * *
17825925 GTTTTTATTTATCAGGCTTAGAGCCAGTGATTATTTAACAAGCTTTGAGTCG
1 GTGTTTAACTAGCAGGCTTAAAGCCGGTGATTATTTAACAAGCTTTGAGCCG
17825977 GTGTTTAACTAGCAGGCTT
1 GTGTTTAACTAGCAGGCTT
17825996 TGAGCCGATG
Statistics
Matches: 102, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 102 1.00
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.35
Consensus pattern (52 bp):
GTGTTTAACTAGCAGGCTTAAAGCCGGTGATTATTTAACAAGCTTTGAGCCG
Found at i:17826025 original size:104 final size:104
Alignment explanation
Indices: 17825836--17826025 Score: 256
Period size: 104 Copynumber: 1.8 Consensus size: 104
17825826 TAACTAGCAA
* * *
17825836 GCTTAAAGCCGGTGATTATTTAACAAGCTTTGAGCCAGTGTTTAACTAGTAGGCTTAAAGCCGGT
1 GCTTAAAGCCAGTGATTATTTAACAAGCTTTGAGCCAGTGTTTAACTAGCAGGCTTAAAGCCGAT
* *
17825901 GATTATTTAATAGGCCTTGAGCCGGTTTTTATTTATCAG
66 GATTATCTAACAGGCCTTGAGCCGGTTTTTATTTATCAG
* * * **
17825940 GCTTAGAGCCAGTGATTATTTAACAAGCTTTGAGTCGGTGTTTAACTAGCAGGCTTTGAGCCGAT
1 GCTTAAAGCCAGTGATTATTTAACAAGCTTTGAGCCAGTGTTTAACTAGCAGGCTTAAAGCCGAT
* *
17826005 G-TTGATCTAGCAGGCTTTGAG
66 GATT-ATCTAACAGGCCTTGAG
17826026 TCGATGATTA
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
103 2 0.03
104 71 0.97
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (104 bp):
GCTTAAAGCCAGTGATTATTTAACAAGCTTTGAGCCAGTGTTTAACTAGCAGGCTTAAAGCCGAT
GATTATCTAACAGGCCTTGAGCCGGTTTTTATTTATCAG
Found at i:17828470 original size:23 final size:23
Alignment explanation
Indices: 17828451--17828725 Score: 415
Period size: 23 Copynumber: 12.0 Consensus size: 23
17828441 TCCATTTACA
17828451 CATAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
*
17828474 CATAAATCACATTAATGTTTAAG
1 CATAAATCACATTAATATTTAAG
* *
17828497 CATAAATCATATTAACATTTAAG
1 CATAAATCACATTAATATTTAAG
*
17828520 CATAAATTACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* *
17828543 CACAAATCAAATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
*
17828566 CATAGATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* * *
17828589 AATAAATCATATTAACATTTAAG
1 CATAAATCACATTAATATTTAAG
17828612 CATAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
17828635 CATAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
17828658 CATAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* * * *
17828681 CACAAACCACATAAATATTTAAA
1 CATAAATCACATTAATATTTAAG
*
17828704 CACAAATCACATTAATATTTAA
1 CATAAATCACATTAATATTTAA
17828726 CACATTTAAT
Statistics
Matches: 226, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 226 1.00
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.33
Consensus pattern (23 bp):
CATAAATCACATTAATATTTAAG
Found at i:17829167 original size:36 final size:36
Alignment explanation
Indices: 17829120--17829350 Score: 327
Period size: 36 Copynumber: 6.4 Consensus size: 36
17829110 TTAGCACAAT
*
17829120 ATATTCACTGTCACATGGCATGAATAACATACCCAC
1 ATATTTACTGTCACATGGCATGAATAACATACCCAC
* * * *
17829156 ATATTTACTGTCTCATGGCATGGATTACACACCCAC
1 ATATTTACTGTCACATGGCATGAATAACATACCCAC
*
17829192 ATATTTATTGTCACATGGCATGAATAACATACCCAC
1 ATATTTACTGTCACATGGCATGAATAACATACCCAC
* * * *
17829228 CTATTTACTGTCTCATGACATGAATAATATACCCAC
1 ATATTTACTGTCACATGGCATGAATAACATACCCAC
* *
17829264 ACATTTACTATCACATGGCATGAATAACATACCCAC
1 ATATTTACTGTCACATGGCATGAATAACATACCCAC
* *
17829300 ATATTTTCTGTCTCATGGCATGAATAACATACCCAC
1 ATATTTACTGTCACATGGCATGAATAACATACCCAC
*
17829336 ATATTTACTTTCACA
1 ATATTTACTGTCACA
17829351 ACAGTCATCA
Statistics
Matches: 167, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 167 1.00
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.31
Consensus pattern (36 bp):
ATATTTACTGTCACATGGCATGAATAACATACCCAC
Found at i:17831082 original size:305 final size:304
Alignment explanation
Indices: 17830531--17831101 Score: 797
Period size: 305 Copynumber: 1.9 Consensus size: 304
17830521 TTCGGATAAT
* * * *
17830531 ATTCTTATTTTACCCTCGAAACTTCTAGGCACAATTTTGAGGTGTGAGACATTAGCCAAGTGCCG
1 ATTCTTATTTTACCCTCGAAACTTCTAAGCACAATTTTGAGGTGTGACACATCAACCAAGTGCCG
*
17830596 ATTGTGAAAGAGTTCTCAGGCATGCCACCAGAAATACTCTCAGGCATGCCACCAGAATAAGAGGT
66 ATTGTGAAAGAGTTCTCAGG-ATGCCACCAGAAATACTCTCACGCATGCCACCAGAATAAGAGGT
* * * ** ***
17830661 AGAATTCTTGATTGAAGTAGCATCTAGTACTGGCCTATATATTGTGCCACATACGGGATGGCGCC
130 AGAATTCTTGATCGAAGTAGCACCTAGTACTGACCTATATATCCTGCCACATACAACATGGCGCC
* * * * *
17830726 ATTAAATTTAAAGGAATTGAAGATACAAATATAAGATATCTTGGATAAGGATTTATTCGACCAAG
195 ATTAAAGTTAAAGGAACTGAAAATACAAATACAAGATATCTTGGATAAGGATTTATTCGACCAAA
17830791 TGTTTCCAGGTAAAATTATAATGGATAAGGAACTGAAGAGGTAAA
260 TGTTTCCAGGTAAAATTATAATGGATAAGGAACTGAAGAGGTAAA
* *
17830836 ATTCTTATTTTACCCTCGAAACTTCTAAGCCCAATTTTG-GGATGTGACACATCAACCAAGTGTC
1 ATTCTTATTTTACCCTCGAAACTTCTAAGCACAATTTTGAGG-TGTGACACATCAACCAAGTGCC
* *** * * *
17830900 GATTGTGAAAGAGTTCTCCAATG-TGTTTCTAGAAATACTCTC-CGCATGCCACCAGACTGAGAG
65 GATTGTGAAAGAGTTCT-C-AGGATGCCACCAGAAATACTCTCACGCATGCCACCAGAATAAGAG
*
17830963 GTAGAATTCTTGATCGAAGTAGCACCTAGTACTGCACCTATATCTCCTGCCACATACAACATGGC
128 GTAGAATTCTTGATCGAAGTAGCACCTAGTACTG-ACCTATATATCCTGCCACATACAACATGGC
* * *
17831028 GCTATTAAAGTTAAAGGAACTGAAAATACAAATACATGATCTCTTGGATAAGGATTTATTCGACC
192 GCCATTAAAGTTAAAGGAACTGAAAATACAAATACAAGATATCTTGGATAAGGATTTATTCGACC
17831093 AAATGTTTC
257 AAATGTTTC
17831102 ACCTTGGGGT
Statistics
Matches: 231, Mismatches: 31, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
304 52 0.23
305 176 0.76
306 1 0.00
307 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (304 bp):
ATTCTTATTTTACCCTCGAAACTTCTAAGCACAATTTTGAGGTGTGACACATCAACCAAGTGCCG
ATTGTGAAAGAGTTCTCAGGATGCCACCAGAAATACTCTCACGCATGCCACCAGAATAAGAGGTA
GAATTCTTGATCGAAGTAGCACCTAGTACTGACCTATATATCCTGCCACATACAACATGGCGCCA
TTAAAGTTAAAGGAACTGAAAATACAAATACAAGATATCTTGGATAAGGATTTATTCGACCAAAT
GTTTCCAGGTAAAATTATAATGGATAAGGAACTGAAGAGGTAAA
Found at i:17835744 original size:12 final size:11
Alignment explanation
Indices: 17835726--17835781 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
17835716 AACAATATTG
17835726 AAAATAAATAA
1 AAAATAAATAA
17835737 ATAAAT-AATAA
1 A-AAATAAATAA
17835748 AAAATGAAAT-A
1 AAAAT-AAATAA
*
17835759 AAAACAAATAA
1 AAAATAAATAA
*
17835770 AACATAAA-AA
1 AAAATAAATAA
17835780 AA
1 AA
17835782 TGGACCAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
10 12 0.32
11 19 0.50
12 7 0.18
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.16
Consensus pattern (11 bp):
AAAATAAATAA
Found at i:17835746 original size:15 final size:14
Alignment explanation
Indices: 17835728--17835780 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 14
17835718 CAATATTGAA
17835728 AATAAATAAATAAAT
1 AATAAA-AAATAAAT
17835743 AATAAAAAATGAAAT
1 AATAAAAAAT-AAAT
17835758 AA-AAACAAATAAA-
1 AATAAA-AAATAAAT
17835771 ACATAAAAAA
1 A-ATAAAAAA
17835781 ATGGACCAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
13 1 0.03
14 14 0.41
15 19 0.56
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17
Consensus pattern (14 bp):
AATAAAAAATAAAT
Found at i:17835768 original size:22 final size:22
Alignment explanation
Indices: 17835726--17835782 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
17835716 AACAATATTG
17835726 AAAATAAATAAATAAATAATAA
1 AAAATAAATAAATAAATAATAA
17835748 AAAATGAAATAAA-AACA-AATAA
1 AAAAT-AAATAAATAA-ATAATAA
* *
17835770 AACATAAAAAAAT
1 AAAATAAATAAAT
17835783 GGACCAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 6 0.20
22 16 0.53
23 8 0.27
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.18
Consensus pattern (22 bp):
AAAATAAATAAATAAATAATAA
Found at i:17836041 original size:14 final size:14
Alignment explanation
Indices: 17836022--17836062 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
17836012 GATTATATTG
17836022 TAAAGGAATAAAAT
1 TAAAGGAATAAAAT
*
17836036 TAAAGG-CTAAAAT
1 TAAAGGAATAAAAT
*
17836049 TAAAGAAATAAAAT
1 TAAAGGAATAAAAT
17836063 AAATTGAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.63, C:0.02, G:0.12, T:0.22
Consensus pattern (14 bp):
TAAAGGAATAAAAT
Found at i:17837021 original size:21 final size:22
Alignment explanation
Indices: 17836979--17837024 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
17836969 TGGTGAGGGT
17836979 GACTGACGTGGCAAAGAACAAC
1 GACTGACGTGGCAAAGAACAAC
* *
17837001 GACTGACGTGG-TAAGAGCAAC
1 GACTGACGTGGCAAAGAACAAC
17837022 GAC
1 GAC
17837025 GTTAAAGGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.37, C:0.22, G:0.30, T:0.11
Consensus pattern (22 bp):
GACTGACGTGGCAAAGAACAAC
Found at i:17837962 original size:50 final size:49
Alignment explanation
Indices: 17837831--17837962 Score: 119
Period size: 50 Copynumber: 2.7 Consensus size: 49
17837821 CACTAGAACA
* * * *
17837831 TTAGGGGTATAGGATTTGATGTGGTAGTTTCATATTTCTCTACTGCAAT
1 TTAGAGGTATAGGATTTGATGTTGTAGCTTCATATTACTCTACTGCAAT
* *
17837880 TTCAGAGAG-ATAAGATTTGCT-TTCGTAGCTTCA-ATCTGACTC-ACTGCAACT
1 TT-AGAG-GTATAGGATTTGATGTT-GTAGCTTCATAT-T-ACTCTACTGCAA-T
*
17837931 TTAGAGGTATAGGATTTGATGTTGTAACTTCA
1 TTAGAGGTATAGGATTTGATGTTGTAGCTTCA
17837963 CTCCATTCCA
Statistics
Matches: 66, Mismatches: 9, Indels: 15
0.73 0.10 0.17
Matches are distributed among these distances:
49 6 0.09
50 51 0.77
51 9 0.14
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.39
Consensus pattern (49 bp):
TTAGAGGTATAGGATTTGATGTTGTAGCTTCATATTACTCTACTGCAAT
Found at i:17838056 original size:102 final size:102
Alignment explanation
Indices: 17837912--17838616 Score: 858
Period size: 102 Copynumber: 6.9 Consensus size: 102
17837902 TCGTAGCTTC
* * * *
17837912 AATCTGA-CTCACTGCAACTTTAGAGG-TATAGGATTTGATGTTGTAACTTCACTCCATTCCATT
1 AATCTGATC-CACTACAACTTCAG-GGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACT
* * *
17837975 GCAACTTCAGGGAGATTGAGATCCGTTACTATTAGTTTT
64 ACAACTTCAGGGAGATTGAGATCCGCTACTGTTAGTTTT
* * * *
17838014 AATCTGAACCACTACAACTTCAGGGATATAAGATTTGCTGTTGTAACTTCACTCCATTTCACTAC
1 AATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTAC
* * *
17838079 AACTTCAAGGAGATTGAGATCTGCTATTGTTAGTTTT
66 AACTTCAGGGAGATTGAGATCCGCTACTGTTAGTTTT
* * *
17838116 AATCTGATCCACTACAATTTCAAGGATATAAGATTTGGTGTTGTAACTTCACTCCATTCCACTAC
1 AATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTAC
* **
17838181 AACTTTAGGGAGATTGAGATCTACTACTGTTAGTTTT
66 AACTTCAGGGAGATTGAGATCCGCTACTGTTAGTTTT
* * *
17838218 AATCTGATCCACTACAATTTCAAGGATATAAGATTTGGTGTTGTAACTTCACTCCATTCCACTAC
1 AATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTAC
* * *
17838283 AACTTTAGGGAGATTGAGATCCGCTGCTATTAGTTTT
66 AACTTCAGGGAGATTGAGATCCGCTACTGTTAGTTTT
* * * * * * * * *
17838320 AATCTAATTCATTGCAATTTGAAGGATATAGGATTTGGTGTTGTAACTTCACTCTATTCCACTAT
1 AATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTAC
*
17838385 AACTTCAGGGAGATTGAGATCCGCTAGTGTTAGTTTT
66 AACTTCAGGGAGATTGAGATCCGCTACTGTTAGTTTT
* * ** * ** * *
17838422 AATGTGATGCACTGTAACTTTAGGGATATAGGATTTAATGTTGTAACTTCACTCCATTCCATTGC
1 AATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTAC
* * *
17838487 AACTTTAGGGAGATTGAGATCAGCTACTGTTTGTTTT
66 AACTTCAGGGAGATTGAGATCCGCTACTGTTAGTTTT
* * * * * **
17838524 AATTTGATCCACTATAACTTTAGGGATATAGGATTTGGTGTTGTAACATCACTGCATTCCGTTAC
1 AATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTAC
*
17838589 AACTTCA-GGATGATTGAGATCCACTACT
66 AACTTCAGGGA-GATTGAGATCCGCTACT
17838617 AACCCAATCT
Statistics
Matches: 533, Mismatches: 67, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
101 5 0.01
102 527 0.99
103 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (102 bp):
AATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTAC
AACTTCAGGGAGATTGAGATCCGCTACTGTTAGTTTT
Found at i:17838084 original size:50 final size:50
Alignment explanation
Indices: 17838022--17838293 Score: 208
Period size: 50 Copynumber: 5.4 Consensus size: 50
17838012 TTAATCTGAA
17838022 CCACTACAACTTCAGGGATATAAGATTTGCTGTTGTAACTTCACTCCATT
1 CCACTACAACTTCAGGGATATAAGATTTGCTGTTGTAACTTCACTCCATT
* * * * ** * * *
17838072 TCACTACAACTTCAAGGAGAT-TGAGATCTGCTATTGTTAGTTTTAATCTGA-T
1 CCACTACAACTTC-AGG-GATATAAGATTTGCTGTTG-TAACTTCACTC-CATT
* * *
17838124 CCACTACAATTTCAAGGATATAAGATTTGGTGTTGTAACTTCACTCCATT
1 CCACTACAACTTCAGGGATATAAGATTTGCTGTTGTAACTTCACTCCATT
* * * * * ** ** * * *
17838174 CCACTACAACTTTAGGGAGATTGAGATCTACTACTGTTAGTTTTAATCTGA-T
1 CCACTACAACTTCAGGGATA-TAAGATTTGCTGTTG-TAACTTCACTC-CATT
* * *
17838226 CCACTACAATTTCAAGGATATAAGATTTGGTGTTGTAACTTCACTCCATT
1 CCACTACAACTTCAGGGATATAAGATTTGCTGTTGTAACTTCACTCCATT
*
17838276 CCACTACAACTTTAGGGA
1 CCACTACAACTTCAGGGA
17838294 GATTGAGATC
Statistics
Matches: 158, Mismatches: 54, Indels: 20
0.68 0.23 0.09
Matches are distributed among these distances:
49 2 0.01
50 62 0.39
51 46 0.29
52 46 0.29
53 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.35
Consensus pattern (50 bp):
CCACTACAACTTCAGGGATATAAGATTTGCTGTTGTAACTTCACTCCATT
Found at i:17838994 original size:100 final size:98
Alignment explanation
Indices: 17838890--17839139 Score: 243
Period size: 100 Copynumber: 2.5 Consensus size: 98
17838880 GGTCTGCTAA
* * * *
17838890 TGTAGCTTTAATTCGATCCACTATAACTTCAGGGATATAGGATTTGATGTTGTACCTTCATATTT
1 TGTAGCTTTAATTCGA-CCACTACAACTTCAGGG-TATAGGATTTGATGTGGTACCATCATATTG
*
17838955 CTCCATTGC-ATCTTCAAAGAGATAAGATTTGCTTC
64 CTCCACTGCAAT-TTCAAAGAGATAAGATTTGCTTC
* * * * * * *
17838990 TGTAGCTTCAA-TCTGACCCACTACAACTTGAAGGGTAGAAGATTTGATATGGTAGCATCATCTT
1 TGTAGCTTTAATTC-GA-CCACTACAACTT-CAGGGTATAGGATTTGATGTGGTACCATCATATT
* * * * *
17839054 GCTCTACTGCAATTTCAGAGAGTTAAGTTTTGCTTT
63 GCTCCACTGCAATTTCAAAGAGATAAGATTTGCTTC
* *
17839090 TGTAGCTTTAATTCGACCTACTGCAACTTCAAGGGTATAGGAATTGATGT
1 TGTAGCTTTAATTCGACC-ACTACAACTTC-AGGGTATAGGATTTGATGT
17839140 CGTAACTGCA
Statistics
Matches: 119, Mismatches: 25, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
99 4 0.03
100 107 0.90
101 8 0.07
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (98 bp):
TGTAGCTTTAATTCGACCACTACAACTTCAGGGTATAGGATTTGATGTGGTACCATCATATTGCT
CCACTGCAATTTCAAAGAGATAAGATTTGCTTC
Found at i:17839257 original size:102 final size:101
Alignment explanation
Indices: 17839109--17839947 Score: 878
Period size: 102 Copynumber: 8.2 Consensus size: 101
17839099 AATTCGACCT
* * * * * *
17839109 ACTGCAACTTCAAGGG-TATAGGAATTGATGTCGTAACTGCACTCCATTCCATTGCAACTTCAGG
1 ACTGCAACTTC-AGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGG
* * ** *
17839173 GAGATTCAAATCTGTAACTGTTAGTTTTAATCCAAACC
65 GAGATTGAGATCTGT-ACTGTTAGTTTTAATCTGATCC
** * * *
17839211 ACTATAACTTCAGGGATATCGGATTTGGTGTTGTAACTTCACTCCATTTCACTACAACTTTAGGG
1 ACTGCAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGGG
*
17839276 AGATTGAGAT-TCGCTACTGTTAGTTTTAATTTGATCC
66 AGATTGAGATCT-G-TACTGTTAGTTTTAATCTGATCC
* * * ** *
17839313 ACTGTAATTTTAGGGATATAGGATTTACTGTTGTAACTTCACTCCATTCCATTACAACTTCAGGG
1 ACTGCAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGGG
*
17839378 AGATTGAGATCCGTTACTGTTAGTTTTAATCTGATCC
66 AGATTGAGATCTG-TACTGTTAGTTTTAATCTGATCC
* * * *
17839415 ACTGTAACTTCAAGGATATAGGATTTGGTGTTGTAACTTCACTCTATTCTACTACAACTTCAGGG
1 ACTGCAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGGG
* * ** * * *
17839480 GGATTGAAATCCACTAGTGTTAGTTTTAATTTAATCC
66 AGATTGAGAT-CTGTACTGTTAGTTTTAATCTGATCC
* * * * *
17839517 ACTGCAACTTCAGGGATGTAGGATTTGATGTTGTAACTTCACTCCATTCCATTGCAACTTTAGGG
1 ACTGCAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGGG
* * *
17839582 AGATTAAGAT-TCGTTACTATTTGTTTTAATCTGATCC
66 AGATTGAGATCT-G-TACTGTTAGTTTTAATCTGATCC
* * * * * *
17839619 ACTACAACTTTAGGGATATAAGATTTGGTATTGTAACTTCACTGCATTCCACTTCAACTTCTA-G
1 ACTGCAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTC-AGG
* * * *
17839683 GAGATTGAGATCAGCTACTATTTGTTTTAATATGATCC
65 GAGATTGAGATCTG-TACTGTTAGTTTTAATCTGATCC
* * * * * *
17839721 ACTACAACTTTAGGGATATAGGATTTTGTGTTGTAACTTCACTCCATTCCACTGCAACTTTAAGG
1 ACTGCAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGGG
* * *
17839786 AGATTGAGATTTTCTACTGCTAGTTTTAATCTGATCC
66 AGATTGAGA-TCTGTACTGTTAGTTTTAATCTGATCC
* * * *
17839823 ATTGCAACTTTAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTCCAGCTTCAGGG
1 ACTGCAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGGG
** * *
17839888 AGATTGAGATCCACTACTGTTAGTTTTACTC-CATTCC
66 AGATTGAGAT-CTGTACTGTTAGTTTTAATCTGA-TCC
* *
17839925 ACTGCAAGTTCAGGGATACAGGA
1 ACTGCAACTTCAGGGATATAGGA
17839948 GTTACCATTT
Statistics
Matches: 618, Mismatches: 106, Indels: 26
0.82 0.14 0.03
Matches are distributed among these distances:
101 8 0.01
102 606 0.98
103 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (101 bp):
ACTGCAACTTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGGG
AGATTGAGATCTGTACTGTTAGTTTTAATCTGATCC
Found at i:17839446 original size:204 final size:203
Alignment explanation
Indices: 17839096--17839915 Score: 1002
Period size: 204 Copynumber: 4.0 Consensus size: 203
17839086 CTTTTGTAGC
* * * * *
17839096 TTTAATTCGA-CCTACTGCAACTTCAAGGG-TATAGGAATTGATGTCGTAACTGCACTCCATTCC
1 TTTAATTTGATCC-ACTGCAACTT-TAGGGATATAGG-ATTTATGTTGTAACTTCACTCCATTCC
* * * * ** * *
17839159 ATTGCAACTTCAGGGAGATTCAAATCTGTAACTGTTAGTTTTAATCCAAACCACTATAACTTCAG
63 ATTGCAACTTCAGGGAGATTGAGATCCGTTACTGTTAGTTTTAATCTGATCCACTACAACTTCAG
* * * * *
17839224 GGATATCGGATTTGGTGTTGTAACTTCACTCCATTTCACTACAACTTTAGGGAGATTGAGATTCG
128 GGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGGGAGATTGAGATCCA
17839289 CTACTGTTAGT
193 CTACTGTTAGT
* *
17839300 TTTAATTTGATCCACTGTAATTTTAGGGATATAGGATTTACTGTTGTAACTTCACTCCATTCCAT
1 TTTAATTTGATCCACTGCAACTTTAGGGATATAGGATTTA-TGTTGTAACTTCACTCCATTCCAT
* ** *
17839365 TACAACTTCAGGGAGATTGAGATCCGTTACTGTTAGTTTTAATCTGATCCACTGTAACTTCAAGG
65 TGCAACTTCAGGGAGATTGAGATCCGTTACTGTTAGTTTTAATCTGATCCACTACAACTTCAGGG
* * * *
17839430 ATATAGGATTTGGTGTTGTAACTTCACTCTATTCTACTACAACTTCAGGGGGATTGAAATCCACT
130 ATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGGGAGATTGAGATCCACT
*
17839495 AGTGTTAGT
195 ACTGTTAGT
* * *
17839504 TTTAATTTAATCCACTGCAACTTCAGGGATGTAGGATTTGATGTTGTAACTTCACTCCATTCCAT
1 TTTAATTTGATCCACTGCAACTTTAGGGATATAGGATTT-ATGTTGTAACTTCACTCCATTCCAT
* * * * * *
17839569 TGCAACTTTAGGGAGATTAAGATTCGTTACTATTTGTTTTAATCTGATCCACTACAACTTTAGGG
65 TGCAACTTCAGGGAGATTGAGATCCGTTACTGTTAGTTTTAATCTGATCCACTACAACTTCAGGG
* * * *
17839634 ATATAAGATTTGGTATTGTAACTTCACTGCATTCCACTTCAACTTCTA-GGAGATTGAGAT-CAG
130 ATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTC-AGGGAGATTGAGATCCA-
* *
17839697 CTACTATTTGT
193 CTACTGTTAGT
* * * *
17839708 TTTAATATGATCCACTACAACTTTAGGGATATAGGATTTTGTGTTGTAACTTCACTCCATTCCAC
1 TTTAATTTGATCCACTGCAACTTTAGGGATATAGGA-TTTATGTTGTAACTTCACTCCATTCCAT
* * ** * * * *
17839773 TGCAACTTTAAGGAGATTGAGAT-TTTCTACTGCTAGTTTTAATCTGATCCATTGCAACTTTAGG
65 TGCAACTTCAGGGAGATTGAGATCCGT-TACTGTTAGTTTTAATCTGATCCACTACAACTTCAGG
* *
17839837 GATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTCCAGCTTCAGGGAGATTGAGATCCAC
129 GATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGGGAGATTGAGATCCAC
17839902 TACTGTTAGT
194 TACTGTTAGT
17839912 TTTA
1 TTTA
17839916 CTCCATTCCA
Statistics
Matches: 530, Mismatches: 76, Indels: 20
0.85 0.12 0.03
Matches are distributed among these distances:
203 12 0.02
204 509 0.96
205 9 0.02
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (203 bp):
TTTAATTTGATCCACTGCAACTTTAGGGATATAGGATTTATGTTGTAACTTCACTCCATTCCATT
GCAACTTCAGGGAGATTGAGATCCGTTACTGTTAGTTTTAATCTGATCCACTACAACTTCAGGGA
TATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTACAACTTCAGGGAGATTGAGATCCACTA
CTGTTAGT
Found at i:17839669 original size:306 final size:305
Alignment explanation
Indices: 17839109--17839915 Score: 997
Period size: 306 Copynumber: 2.6 Consensus size: 305
17839099 AATTCGACCT
* * * * * *
17839109 ACTGCAACTTCAAGGGTATAGGAATTGATGTCGTAACTGCACTCCATTCCATTGCAACTTCAGGG
1 ACTGCAACTTCAAGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTGCAACTTCAGGG
* * * * ** *
17839174 AGATTCAAATCTGTAACTGTTAGTTTTAATCCAAACCACTATAACTTCAGGGATATCGGATTTGG
66 AGATTGAAATCTCT-ACTGTTAGTTTTAATCTAATCCACTGCAACTTCAGGGATATAGGATTTGG
* *
17839239 TGTTGTAACTTCACTCCATTTCACTACAACTTTAGGGAGATTGAGATTCGCTACTGTTAGTTTTA
130 TGTTGTAACTTCACTCCATTCCACTACAACTTTAGGGAGATTGAGATTCGCTACTATTAGTTTTA
* ** * * *
17839304 ATTTGATCCACTGTAATTTTAGGGATATAGGATTTACTGTTGTAACTTCACTCCATTCCA-TTAC
195 ATCTGATCCACTACAACTTTAGGGATATAAGATTTACTATTGTAACTTCACTCCATTCCACTT-C
* * * *
17839368 AACTTC-AGGGAGATTGAGATCCGTTACTGTTAGTTTTAATCTGATCC
259 AACTTCTA-GGAGATTGAGATCAGCTACTATTAGTTTTAATATGATCC
* * * *
17839415 ACTGTAACTTCAAGGATATAGGATTTGGTGTTGTAACTTCACTCTATTCTACTACAACTTCAGGG
1 ACTGCAACTTCAAGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTGCAACTTCAGGG
* * * * * *
17839480 GGATTGAAATCCACTAGTGTTAGTTTTAATTTAATCCACTGCAACTTCAGGGATGTAGGATTTGA
66 AGATTGAAAT-CTCTACTGTTAGTTTTAATCTAATCCACTGCAACTTCAGGGATATAGGATTTGG
* * * * *
17839545 TGTTGTAACTTCACTCCATTCCATTGCAACTTTAGGGAGATTAAGATTCGTTACTATTTGTTTTA
130 TGTTGTAACTTCACTCCATTCCACTACAACTTTAGGGAGATTGAGATTCGCTACTATTAGTTTTA
** *
17839610 ATCTGATCCACTACAACTTTAGGGATATAAGATTTGGTATTGTAACTTCACTGCATTCCACTTCA
195 ATCTGATCCACTACAACTTTAGGGATATAAGATTTACTATTGTAACTTCACTCCATTCCACTTCA
*
17839675 ACTTCTAGGAGATTGAGATCAGCTACTATTTGTTTTAATATGATCC
260 ACTTCTAGGAGATTGAGATCAGCTACTATTAGTTTTAATATGATCC
* * * * * *
17839721 ACTACAACTTTAGGGATATAGGATTTTGTGTTGTAACTTCACTCCATTCCACTGCAACTTTAAGG
1 ACTGCAACTTCAAGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTGCAACTTCAGGG
* * * * * *
17839786 AGATTGAGATTTTCTACTGCTAGTTTTAATCTGATCCATTGCAACTTTAGGGATATAGGATTTGG
66 AGATTGA-AATCTCTACTGTTAGTTTTAATCTAATCCACTGCAACTTCAGGGATATAGGATTTGG
* * * * * *
17839851 TGTTGTAACTTCACTCCATTCCACTCCAGCTTCAGGGAGATTGAGATCCACTACTGTTAGTTTTA
130 TGTTGTAACTTCACTCCATTCCACTACAACTTTAGGGAGATTGAGATTCGCTACTATTAGTTTTA
17839916 CTCCATTCCA
Statistics
Matches: 421, Mismatches: 76, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
306 414 0.98
307 7 0.02
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (305 bp):
ACTGCAACTTCAAGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTGCAACTTCAGGG
AGATTGAAATCTCTACTGTTAGTTTTAATCTAATCCACTGCAACTTCAGGGATATAGGATTTGGT
GTTGTAACTTCACTCCATTCCACTACAACTTTAGGGAGATTGAGATTCGCTACTATTAGTTTTAA
TCTGATCCACTACAACTTTAGGGATATAAGATTTACTATTGTAACTTCACTCCATTCCACTTCAA
CTTCTAGGAGATTGAGATCAGCTACTATTAGTTTTAATATGATCC
Found at i:17845724 original size:28 final size:27
Alignment explanation
Indices: 17845662--17845724 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
17845652 TTAAATCTTT
* *
17845662 TTTTTTTTAAAACAAATCATTTCATCC
1 TTTTTTTTAAAAAAAAACATTTCATCC
**
17845689 TTAGTTTTAAAAAAAAACATTTCATTCC
1 TTTTTTTTAAAAAAAAACATTTCA-TCC
17845717 TTTTTTTT
1 TTTTTTTT
17845725 CTCTAAACCT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.33, C:0.14, G:0.02, T:0.51
Consensus pattern (27 bp):
TTTTTTTTAAAAAAAAACATTTCATCC
Found at i:17848402 original size:29 final size:29
Alignment explanation
Indices: 17848358--17848448 Score: 121
Period size: 29 Copynumber: 3.1 Consensus size: 29
17848348 AATAGATATA
* *
17848358 ATACGAATACAATTACAGATGCAGACATG
1 ATACAAATACAGTTACAGATGCAGACATG
*
17848387 ATACAGATACAGTTACAGATGCAGACATG
1 ATACAAATACAGTTACAGATGCAGACATG
* *
17848416 ATACAAATATC-GTTACAAATGCAGACATA
1 ATACAAATA-CAGTTACAGATGCAGACATG
17848445 ATAC
1 ATAC
17848449 CCCATCCGCT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
29 54 0.98
30 1 0.02
ACGTcount: A:0.45, C:0.18, G:0.15, T:0.22
Consensus pattern (29 bp):
ATACAAATACAGTTACAGATGCAGACATG
Found at i:17859422 original size:52 final size:52
Alignment explanation
Indices: 17859339--17859582 Score: 282
Period size: 52 Copynumber: 4.7 Consensus size: 52
17859329 AAATGCAAAA
*
17859339 AGGTCCGATGACTATGTGTCATCGTGAGTATATAAATCCTTTACGGATTATG
1 AGGTCTGATGACTATGTGTCATCGTGAGTATATAAATCCTTTACGGATTATG
*
17859391 AGGT-TCGATGACTATGTGTCTTCGTGAGTATATGAAA-CCTTTACGGATTATG
1 AGGTCT-GATGACTATGTGTCATCGTGAGTATAT-AAATCCTTTACGGATTATG
** * * *
17859443 AGGTCTGATGACTACATGTCATCTTGAGTATATGAATCTTTTACGGATTATG
1 AGGTCTGATGACTATGTGTCATCGTGAGTATATAAATCCTTTACGGATTATG
* * * * *
17859495 -GGATCTGATGATTATGTGTCATCGTGAGCATATGAATCCTTTTATGGATT-TA
1 AGG-TCTGATGACTATGTGTCATCGTGAGTATATAAATCC-TTTACGGATTATG
* * *
17859547 AGGTCTGATGACTTTGTGTCATCTTAAGTAT-TAAAT
1 AGGTCTGATGACTATGTGTCATCGTGAGTATATAAAT
17859583 GGGAAATGAG
Statistics
Matches: 163, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
51 8 0.05
52 140 0.86
53 15 0.09
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (52 bp):
AGGTCTGATGACTATGTGTCATCGTGAGTATATAAATCCTTTACGGATTATG
Found at i:17859520 original size:104 final size:104
Alignment explanation
Indices: 17859338--17859582 Score: 316
Period size: 104 Copynumber: 2.4 Consensus size: 104
17859328 TAAATGCAAA
* * *
17859338 AAGGTCCGATGACTATGTGTCATCGTGAGTATATAAATCCTTTACGGATTATGAGGTTCGATGAC
1 AAGGTCTGATGACTATGTGTCATCTTGAGTATATAAATCCTTTACGGATTATGAGGATCGATGAC
* *
17859403 TATGTGTCTTCGTGAGTATATGAAACC-TTTACGGATTAT
66 TATGTGTCATCGTGAGCATATGAAACCTTTTACGGATT-T
* ** * *
17859442 GAGGTCTGATGACTACATGTCATCTTGAGTATATGAATCTTTTACGGATTATG-GGATCTGATGA
1 AAGGTCTGATGACTATGTGTCATCTTGAGTATATAAATCCTTTACGGATTATGAGGATC-GATGA
* * *
17859506 TTATGTGTCATCGTGAGCATATGAATCCTTTTATGGATTT
65 CTATGTGTCATCGTGAGCATATGAAACCTTTTACGGATTT
* *
17859546 AAGGTCTGATGACTTTGTGTCATCTTAAGTAT-TAAAT
1 AAGGTCTGATGACTATGTGTCATCTTGAGTATATAAAT
17859583 GGGAAATGAG
Statistics
Matches: 120, Mismatches: 19, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
103 8 0.07
104 103 0.86
105 9 0.08
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (104 bp):
AAGGTCTGATGACTATGTGTCATCTTGAGTATATAAATCCTTTACGGATTATGAGGATCGATGAC
TATGTGTCATCGTGAGCATATGAAACCTTTTACGGATTT
Found at i:17866587 original size:18 final size:18
Alignment explanation
Indices: 17866547--17866581 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
17866537 TAAATAATAA
*
17866547 AATATTATTATTTATTAT
1 AATATTATTATTAATTAT
17866565 AATATTATTATTAATTA
1 AATATTATTATTAATTA
17866582 ATATATCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
AATATTATTATTAATTAT
Found at i:17869764 original size:17 final size:17
Alignment explanation
Indices: 17869744--17869776 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17869734 GTGACAATTA
17869744 AAATGTAATGACAATGG
1 AAATGTAATGACAATGG
*
17869761 AAATGTGATGACAATG
1 AAATGTAATGACAATG
17869777 CATACTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.24, T:0.24
Consensus pattern (17 bp):
AAATGTAATGACAATGG
Found at i:17879063 original size:20 final size:19
Alignment explanation
Indices: 17879009--17879063 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 19
17878999 TCTCGAGTTC
*
17879009 TTTTTCTCTAATTTCTTTT
1 TTTTTCTCTCATTTCTTTT
17879028 TTTCTTCTCTCTATTTCTTTT
1 TTT-TTCTCTC-ATTTCTTTT
17879049 ATTTTTCTCTCATTT
1 -TTTTTCTCTCATTT
17879064 TCTCTCATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
19 3 0.09
20 10 0.31
21 16 0.50
22 3 0.09
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTTCTCTCATTTCTTTT
Found at i:17880224 original size:56 final size:56
Alignment explanation
Indices: 17880138--17880251 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
17880128 GATGATTATG
*
17880138 AGTCGCTTGAGTTCTCGATCGAAATAAGAAGTATTGTTCATAAATGAATTTGGTAA
1 AGTCGCTTGAGTTCCCGATCGAAATAAGAAGTATTGTTCATAAATGAATTTGGTAA
17880194 AGTCGCTTGAGTTCCCGATCGAAATAAGAAGTATTGTTCATAAATGAATTTGGTAA
1 AGTCGCTTGAGTTCCCGATCGAAATAAGAAGTATTGTTCATAAATGAATTTGGTAA
17880250 AG
1 AG
17880252 GATAAAAATG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.32
Consensus pattern (56 bp):
AGTCGCTTGAGTTCCCGATCGAAATAAGAAGTATTGTTCATAAATGAATTTGGTAA
Found at i:17883664 original size:30 final size:30
Alignment explanation
Indices: 17883628--17883691 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
17883618 TGATAATTAG
*
17883628 TAAAATTACACTTTAATTTTTTAAAAATGA
1 TAAAATTACACTTTAATATTTTAAAAATGA
** * *
17883658 TAAAATTTTATTTTAATATTTTAAAAATTA
1 TAAAATTACACTTTAATATTTTAAAAATGA
17883688 TAAA
1 TAAA
17883692 GATATAAACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (30 bp):
TAAAATTACACTTTAATATTTTAAAAATGA
Found at i:17885399 original size:62 final size:62
Alignment explanation
Indices: 17885333--17885456 Score: 171
Period size: 62 Copynumber: 2.0 Consensus size: 62
17885323 CTTTTTCTTC
* * *
17885333 AGTTGTAATTACA-ATATTCACTACCGATAATAATAATAATTAATCGATT-AGTTGTAGGTGTT
1 AGTTGTAATTA-AGATATTCACCACCGACAATAATAATAATTAATCGATTCA-TTGTAAGTGTT
* *
17885395 AGTTGTAATTAAGATATTTACCACCGACAATAATAATAATTAATCTATTCATTGTAAGTGTT
1 AGTTGTAATTAAGATATTCACCACCGACAATAATAATAATTAATCGATTCATTGTAAGTGTT
17885457 TTTTGGAGAC
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
61 1 0.02
62 53 0.96
63 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (62 bp):
AGTTGTAATTAAGATATTCACCACCGACAATAATAATAATTAATCGATTCATTGTAAGTGTT
Found at i:17887944 original size:22 final size:18
Alignment explanation
Indices: 17887910--17887959 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
17887900 AATGTCTATC
17887910 TAAATTATTAGAGTAATGTT
1 TAAATTATTAGAG-AA-GTT
17887930 TAAATTGATTTAGAGAAGTT
1 TAAATT-A-TTAGAGAAGTT
*
17887950 TAAAATATTA
1 TAAATTATTA
17887960 TTTAGTAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 3 0.11
19 1 0.04
20 14 0.52
21 3 0.11
22 6 0.22
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (18 bp):
TAAATTATTAGAGAAGTT
Found at i:17887962 original size:22 final size:23
Alignment explanation
Indices: 17887913--17887964 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
17887903 GTCTATCTAA
17887913 ATTA-TTAGAGTAATGTTTAAAT
1 ATTATTTAGAGTAATGTTTAAAT
*
17887935 -TGATTTAGAG-AA-GTTTAAAAT
1 ATTATTTAGAGTAATGTTT-AAAT
17887956 ATTATTTAG
1 ATTATTTAG
17887965 TAGTTAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 4 0.16
21 8 0.32
22 13 0.52
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.44
Consensus pattern (23 bp):
ATTATTTAGAGTAATGTTTAAAT
Found at i:17889950 original size:21 final size:19
Alignment explanation
Indices: 17889920--17889968 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 19
17889910 GTCTTTTGTC
*
17889920 TTTTTCTTTTTTTTCTCAA
1 TTTTTCTTTTTTTTTTCAA
17889939 TTTTCTCTTTTTTTTTTCAA
1 TTTT-TCTTTTTTTTTTCAA
17889959 TTTTTCTTTT
1 TTTTTCTTTT
17889969 CGACTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTCTTTTTTTTTTCAA
Found at i:17890934 original size:7 final size:7
Alignment explanation
Indices: 17890920--17890987 Score: 75
Period size: 7 Copynumber: 9.4 Consensus size: 7
17890910 AATAAAATAA
17890920 AAAAATG
1 AAAAATG
*
17890927 AAAGATG
1 AAAAATG
* *
17890934 AGAGATG
1 AAAAATG
17890941 AAAAATG
1 AAAAATG
17890948 AAAAATG
1 AAAAATG
17890955 AAAAATG
1 AAAAATG
17890962 AAAAAATG
1 -AAAAATG
17890970 AAAAAAATG
1 --AAAAATG
17890979 -AAAATG
1 AAAAATG
17890985 AAA
1 AAA
17890988 CTAAATGTAC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
6 6 0.11
7 33 0.61
8 7 0.13
9 8 0.15
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.13
Consensus pattern (7 bp):
AAAAATG
Found at i:17890982 original size:15 final size:16
Alignment explanation
Indices: 17890941--17890987 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
17890931 ATGAGAGATG
17890941 AAAAATGAAAAATG--
1 AAAAATGAAAAATGAA
17890955 AAAAATGAAAAAATGAA
1 AAAAATG-AAAAATGAA
17890972 AAAAATG-AAAATGAA
1 AAAAATGAAAAATGAA
17890987 A
1 A
17890988 CTAAATGTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.23
15 16 0.53
17 7 0.23
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (16 bp):
AAAAATGAAAAATGAA
Found at i:17893166 original size:12 final size:12
Alignment explanation
Indices: 17893150--17893184 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
17893140 AGAGCCTATA
17893150 AAAAATAAAATGT
1 AAAAATAAAAT-T
*
17893163 AAAAATTAAATT
1 AAAAATAAAATT
17893175 AAAAATAAAA
1 AAAAATAAAA
17893185 AATATGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (12 bp):
AAAAATAAAATT
Found at i:17894145 original size:20 final size:18
Alignment explanation
Indices: 17894120--17894169 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
17894110 AATGTTTATC
17894120 TAAATTATTAGAGTAATGTT
1 TAAATTATTAGAG-AA-GTT
17894140 TAAATTGATTTAGAGAAGTT
1 TAAATT-A-TTAGAGAAGTT
*
17894160 TAAAATATTA
1 TAAATTATTA
17894170 TTTAGTAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 3 0.11
19 1 0.04
20 14 0.52
21 3 0.11
22 6 0.22
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (18 bp):
TAAATTATTAGAGAAGTT
Found at i:17894172 original size:22 final size:23
Alignment explanation
Indices: 17894123--17894174 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
17894113 GTTTATCTAA
17894123 ATTA-TTAGAGTAATGTTTAAAT
1 ATTATTTAGAGTAATGTTTAAAT
*
17894145 -TGATTTAGAG-AA-GTTTAAAAT
1 ATTATTTAGAGTAATGTTT-AAAT
17894166 ATTATTTAG
1 ATTATTTAG
17894175 TAGTTAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 4 0.16
21 8 0.32
22 13 0.52
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.44
Consensus pattern (23 bp):
ATTATTTAGAGTAATGTTTAAAT
Found at i:17895648 original size:25 final size:23
Alignment explanation
Indices: 17895616--17895661 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
17895606 GTTGGATACA
17895616 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
17895641 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
17895662 TCCTAAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:17898104 original size:36 final size:36
Alignment explanation
Indices: 17897884--17898094 Score: 232
Period size: 36 Copynumber: 6.0 Consensus size: 36
17897874 CTGTTGTAAA
* * *
17897884 AGTAAATATGTTGCTATGTTATTCATGCCATGTGAC
1 AGTAAATATGTGGGTATGTTATTCATGCCATGTGAT
* * *
17897920 AGTAAATATGT--G-A-GTAATCCATGCCATGAGAT
1 AGTAAATATGTGGGTATGTTATTCATGCCATGTGAT
* * *
17897952 AGTAAACATGTGGGTATGTTATTCACGCCATGTGAA
1 AGTAAATATGTGGGTATGTTATTCATGCCATGTGAT
* ** * * **
17897988 AGTAAATATATAAGTATGTTGTTTATGCCATGAAAT
1 AGTAAATATGTGGGTATGTTATTCATGCCATGTGAT
**
17898024 AGTAAATATGTGGGTATGTTATTCATGGAATGTGAT
1 AGTAAATATGTGGGTATGTTATTCATGCCATGTGAT
17898060 AGTAAATATGTGGGTATGTTATTCATGCCATGTGA
1 AGTAAATATGTGGGTATGTTATTCATGCCATGTGA
17898095 CAGAGAATAT
Statistics
Matches: 139, Mismatches: 32, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
32 25 0.18
33 1 0.01
34 1 0.01
35 1 0.01
36 111 0.80
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (36 bp):
AGTAAATATGTGGGTATGTTATTCATGCCATGTGAT
Found at i:17898529 original size:23 final size:23
Alignment explanation
Indices: 17898497--17898739 Score: 261
Period size: 23 Copynumber: 10.0 Consensus size: 23
17898487 TATCATAAAA
*
17898497 TGTGCATTAAATATTAATATGATT
1 TGTGC-TTAAATATTAATGTGATT
*
17898521 TATGCTTAAATATTAATGTGATT
1 TGTGCTTAAATATTAATGTGATT
*
17898544 TGTGCTTAAATATTAATTTGATT
1 TGTGCTTAAATATTAATGTGATT
17898567 TGTGCTTAAATATTAATGTGATT
1 TGTGCTTAAATATTAATGTGATT
*
17898590 TGTGTTTAAATATTAATGTGATT
1 TGTGCTTAAATATTAATGTGATT
*
17898613 TGTGCTTAAACATTAATGTGATTTAT
1 TGTGCTTAAATATTAATGTGA--T-T
* * * * *
17898639 ATGTGATTTATTCTTAAATGTTAATATAATT
1 -TGTGCTTAAATATT-AATG------TGATT
* *
17898670 TATGCTTAAATATTAATTTGATT
1 TGTGCTTAAATATTAATGTGATT
17898693 TGTGCTTAAATATTAATGTGATT
1 TGTGCTTAAATATTAATGTGATT
*
17898716 TGTGCTTAAACATTAATGTGATT
1 TGTGCTTAAATATTAATGTGATT
17898739 T
1 T
17898740 ATATGTGATT
Statistics
Matches: 184, Mismatches: 24, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
23 149 0.81
24 4 0.02
25 1 0.01
26 1 0.01
27 9 0.05
28 4 0.02
29 3 0.02
30 9 0.05
31 1 0.01
32 1 0.01
34 2 0.01
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.49
Consensus pattern (23 bp):
TGTGCTTAAATATTAATGTGATT
Found at i:17898566 original size:46 final size:46
Alignment explanation
Indices: 17898497--17898823 Score: 294
Period size: 46 Copynumber: 6.6 Consensus size: 46
17898487 TATCATAAAA
17898497 TGTGCATTAAATATTAATATGATTTATGCTTAAATATTAATGTGATT
1 TGTGC-TTAAATATTAATATGATTTATGCTTAAATATTAATGTGATT
* *
17898544 TGTGCTTAAATATTAATTTGATTTGTGCTTAAATATTAATGTGATT
1 TGTGCTTAAATATTAATATGATTTATGCTTAAATATTAATGTGATT
* * * *
17898590 TGTGTTTAAATATTAATGTGATTTGTGCTTAAACATTAATGTGATTTAT
1 TGTGCTTAAATATTAATATGATTTATGCTTAAATATTAATGTGA--T-T
* * *
17898639 ATGTGATTTATTCTTAAATGTTAATATAATTTATGCTTAAATATTAATTTGATT
1 -TGTG-------CTTAAATATTAATATGATTTATGCTTAAATATTAATGTGATT
* * *
17898693 TGTGCTTAAATATTAATGTGATTTGTGCTTAAACATTAATGTGATTTAT
1 TGTGCTTAAATATTAATATGATTTATGCTTAAATATTAATGTGA--T-T
* *
17898742 ATGTGATTTATTCTTAAATGTTAATATGATTTATACTTAAATATTAATGTGATT
1 -TGTG-------CTTAAATATTAATATGATTTATGCTTAAATATTAATGTGATT
* *
17898796 TATGCTTAAAATATTAATGTGATTTATG
1 TGTGCTT-AAATATTAATATGATTTATG
17898824 TGTAAATGGA
Statistics
Matches: 230, Mismatches: 27, Indels: 46
0.76 0.09 0.15
Matches are distributed among these distances:
46 117 0.51
47 22 0.10
48 2 0.01
49 2 0.01
50 8 0.03
53 7 0.03
54 2 0.01
55 2 0.01
57 68 0.30
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.49
Consensus pattern (46 bp):
TGTGCTTAAATATTAATATGATTTATGCTTAAATATTAATGTGATT
Found at i:17898663 original size:34 final size:34
Alignment explanation
Indices: 17898605--17898672 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
17898595 TTAAATATTA
* * *
17898605 ATGTGATTTGTGCTTAAACATTAATGTGATTTAT
1 ATGTGATTTATGCTTAAACATTAATATAATTTAT
* **
17898639 ATGTGATTTATTCTTAAATGTTAATATAATTTAT
1 ATGTGATTTATGCTTAAACATTAATATAATTTAT
17898673 GCTTAAATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.32, C:0.04, G:0.13, T:0.50
Consensus pattern (34 bp):
ATGTGATTTATGCTTAAACATTAATATAATTTAT
Found at i:17898663 original size:80 final size:80
Alignment explanation
Indices: 17898562--17898716 Score: 229
Period size: 80 Copynumber: 1.9 Consensus size: 80
17898552 AATATTAATT
* * * * *
17898562 TGATTTGTGCTTAAATATTAATGTGATTTGTGTTTAAATATTAATGTGATTTGTGCTTAAACATT
1 TGATTTATGCTTAAATATTAATATAATTTATGCTTAAATATTAATGTGATTTGTGCTTAAACATT
17898627 AATGTGATTTATATG
66 AATGTGATTTATATG
* * * *
17898642 TGATTTATTCTTAAATGTTAATATAATTTATGCTTAAATATTAATTTGATTTGTGCTTAAATATT
1 TGATTTATGCTTAAATATTAATATAATTTATGCTTAAATATTAATGTGATTTGTGCTTAAACATT
17898707 AATGTGATTT
66 AATGTGATTT
17898717 GTGCTTAAAC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.32, C:0.04, G:0.14, T:0.50
Consensus pattern (80 bp):
TGATTTATGCTTAAATATTAATATAATTTATGCTTAAATATTAATGTGATTTGTGCTTAAACATT
AATGTGATTTATATG
Found at i:17898680 original size:103 final size:103
Alignment explanation
Indices: 17898536--17898820 Score: 462
Period size: 103 Copynumber: 2.8 Consensus size: 103
17898526 TTAAATATTA
* * * * *
17898536 ATGTGATTTGTGCTTAAATATTAATTTGATTTGTGCTTAAATATTAATGTGATTTGTGTTTAAAT
1 ATGTGATTTATTCTTAAATGTTAATATGATTTATGCTTAAATATTAATGTGATTTGTGTTTAAAT
17898601 ATTAATGTGATTTGTGCTTAAACATTAATGTGATTTAT
66 ATTAATGTGATTTGTGCTTAAACATTAATGTGATTTAT
* * *
17898639 ATGTGATTTATTCTTAAATGTTAATATAATTTATGCTTAAATATTAATTTGATTTGTGCTTAAAT
1 ATGTGATTTATTCTTAAATGTTAATATGATTTATGCTTAAATATTAATGTGATTTGTGTTTAAAT
17898704 ATTAATGTGATTTGTGCTTAAACATTAATGTGATTTAT
66 ATTAATGTGATTTGTGCTTAAACATTAATGTGATTTAT
* * *
17898742 ATGTGATTTATTCTTAAATGTTAATATGATTTATACTTAAATATTAATGTGATTTATGCTTAAAA
1 ATGTGATTTATTCTTAAATGTTAATATGATTTATGCTTAAATATTAATGTGATTTGTG-TTTAAA
17898807 TATTAATGTGATTT
65 TATTAATGTGATTT
17898821 ATGTGTAAAT
Statistics
Matches: 167, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
103 149 0.89
104 18 0.11
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (103 bp):
ATGTGATTTATTCTTAAATGTTAATATGATTTATGCTTAAATATTAATGTGATTTGTGTTTAAAT
ATTAATGTGATTTGTGCTTAAACATTAATGTGATTTAT
Found at i:17898751 original size:80 final size:80
Alignment explanation
Indices: 17898582--17898822 Score: 240
Period size: 80 Copynumber: 3.0 Consensus size: 80
17898572 TTAAATATTA
* * * * *
17898582 ATGTGATTTGTGTTTAAATATTAATGTGATTTGTGCTTAAACATTAATGTGATTTATATGTGATT
1 ATGTGATTTATGCTTAAATATTAATATGATTTGTGCTTAAATATTAATGTGA--T-T-TGTG-CT
** *
17898647 TATTC-TTAA-ATG--TTA-
61 TAAACATTAATGTGATTTAT
* * *
17898662 ATATAATTTATGCTTAAATATTAATTTGATTTGTGCTTAAATATTAATGTGATTTGTGCTTAAAC
1 ATGTGATTTATGCTTAAATATTAATATGATTTGTGCTTAAATATTAATGTGATTTGTGCTTAAAC
17898727 ATTAATGTGATTTAT
66 ATTAATGTGATTTAT
* * * * *
17898742 ATGTGATTTATTCTTAAATGTTAATATGATTTATACTTAAATATTAATGTGATTTATGCTTAAAA
1 ATGTGATTTATGCTTAAATATTAATATGATTTGTGCTTAAATATTAATGTGATTTGTGCTT-AAA
*
17898807 TATTAATGTGATTTAT
65 CATTAATGTGATTTAT
17898823 GTGTAAATGG
Statistics
Matches: 136, Mismatches: 19, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
75 4 0.03
76 8 0.06
77 3 0.02
78 1 0.01
79 3 0.02
80 99 0.73
81 18 0.13
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.49
Consensus pattern (80 bp):
ATGTGATTTATGCTTAAATATTAATATGATTTGTGCTTAAATATTAATGTGATTTGTGCTTAAAC
ATTAATGTGATTTAT
Found at i:17898758 original size:34 final size:34
Alignment explanation
Indices: 17898708--17898776 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
17898698 TTAAATATTA
* *
17898708 ATGTGATTTGTGCTTAAACATTAATGTGATTTAT
1 ATGTGATTTATGCTTAAACATTAATATGATTTAT
* **
17898742 ATGTGATTTATTCTTAAATGTTAATATGATTTAT
1 ATGTGATTTATGCTTAAACATTAATATGATTTAT
17898776 A
1 A
17898777 CTTAAATATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.32, C:0.04, G:0.14, T:0.49
Consensus pattern (34 bp):
ATGTGATTTATGCTTAAACATTAATATGATTTAT
Found at i:17898772 original size:23 final size:23
Alignment explanation
Indices: 17898742--17898822 Score: 117
Period size: 23 Copynumber: 3.5 Consensus size: 23
17898732 TGTGATTTAT
* *
17898742 ATGTGATTTATTCTTAAATGTTA
1 ATGTGATTTATACTTAAATATTA
*
17898765 ATATGATTTATACTTAAATATTA
1 ATGTGATTTATACTTAAATATTA
*
17898788 ATGTGATTTATGCTTAAAATATTA
1 ATGTGATTTATACTT-AAATATTA
17898812 ATGTGATTTAT
1 ATGTGATTTAT
17898823 GTGTAAATGG
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
23 33 0.63
24 19 0.37
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (23 bp):
ATGTGATTTATACTTAAATATTA
Found at i:17906972 original size:216 final size:214
Alignment explanation
Indices: 17906590--17908798 Score: 1439
Period size: 216 Copynumber: 10.4 Consensus size: 214
17906580 GGGTGTTACA
* * ** * * *
17906590 GACAAACTATTTAGACCAACTGATG-CGATTTCCTGAGCATAGAAAGTTTGGAAAATTTCTCGAA
1 GACAAAATATTTAGACCAAATGATGTC-ATTTCCCAAGCATGGAATGTTT-GAAAATTGCTCGAA
* * * **
17906654 GGATTGGATTGTCTTGAATACTTT-ATGGAACCGAAGTTATAAAAGAACAT-GTAAAAGTTTTTC
64 GGATTGGATCGTCTTGAATACTTTAAT-GAA-CAAAGTTATAAAAGAAC-TCATAAAAGTTTGAC
* * * * * * *
17906717 AAGGTCGGACGTTCCTCCAAGATCCAAGAGAGAAACAATTCTCAAGCAAATAATTTTTTAATTCA
126 AAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCA
17906782 AAGACCAAAACTTGTTTACAAAAT
191 AAGACCAAAACTTGTTTACAAAAT
* * *
17906806 GGCAAAAAATTTAGACCAAATGATGTCATTTCCCAAGCATGGAATGTTTGAAAAATGACTCGAAG
1 GACAAAATATTTAGACCAAATGATGTCATTTCCCAAGCATGGAATGTTTGAAAATTG-CTCGAAG
* * * * * *
17906871 GATTGAATCGTATTGAATACATTAAAGAACGAAAGTTATAAAA-AACTCGTAAAAGTTTAAACAA
65 GATTGGATCGTCTTGAATACTTTAATGAAC-AAAGTTATAAAAGAACTCATAAAAGTTT-GACAA
* ** * * * * *
17906935 GTTTGAAAGTTTTTCCAATAAGCAAGAGAGAAACAATTCTCACGTACATAGGTTTTTAATTCAAA
128 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAA
* * *
17907000 GACCAAAACATGATTACCAAAT
193 GACCAAAACTTGTTTACAAAAT
* * * * * *
17907022 GACAAATTATTTTGACCAAATGATGTGATTT-CCAGAGCATGGAATTTTTGGAAAATTACTTGAA
1 GACAAAATATTTAGACCAAATGATGTCATTTCCCA-AGCATGGAATGTTT-GAAAATTGCTCGAA
* ** * *
17907086 TGATTGGATTATCTTGAATACTTTAACGAACAGAAGTTATGAAAGAACTCATAAAAGTTTGACAA
64 GGATTGGATCGTCTTGAATACTTTAATGAACA-AAGTTATAAAAGAACTCATAAAAGTTTGACAA
* * * *
17907151 GTTCGGAAGTTCGTCCACGAACCAAGAGAGAAACGATTCTCACGTAAATAAGTTTTTAATTCAAA
128 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAA
17907216 GACCAAAACTTGTTTACAAAAT
193 GACCAAAACTTGTTTACAAAAT
* * * * ** *
17907238 GACAAACTATGTGGACCAAATTATG-CGATTTCCTGAGCATGGAATGTTCAGAAAATTGCTCGAA
1 GACAAAATATTTAGACCAAATGATGTC-ATTTCCCAAGCATGGAATGTT-TGAAAATTGCTCGAA
** * * * * * *
17907302 GGATTGGATAATCTTGAATACATTATTCAACAGATGTTATAAAAGAGCTTATAAAAGTTTGACAA
64 GGATTGGATCGTCTTGAATACTTTAATGAACA-AAGTTATAAAAGAACTCATAAAAGTTTGACAA
* * * * * ** *
17907367 GTTCGGAAGTTCGTCCAAGGACCAAAAGGGAAAAAAAACTCACA-TCAATAAGTTTTTAATTCAA
128 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA-AGTAAATAAGTTTTTAATTCAA
*
17907431 AGACCAAAACTTGTTTACAAAAA
192 AGACCAAAACTTGTTTACAAAAT
** * *
17907454 GACAACCTATTTAGACC-AA--ATG--A--T--CGAGCATGGAATGTTCAGAAAATTGCTCGAAG
1 GACAAAATATTTAGACCAAATGATGTCATTTCCCAAGCATGGAATGTT-TGAAAATTGCTCGAAG
* * * * * *
17907510 GAATGGATTGTCTTGAATACTTTAATTAACTGAAGTTATAAAAGAACTCGTATAAA-TTTCACAA
65 GATTGGATCGTCTTGAATACTTTAATGAAC-AAAGTTATAAAAGAACTCATA-AAAGTTTGACAA
* * ** *
17907574 GTTC-AGAAGTTCATCCTAGAATGAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATT-AA
128 GTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAA
17907637 AGGACCAAAACTTGTTTACAAAAT
192 A-GACCAAAACTTGTTTACAAAAT
* * * * *
17907661 GA-AAAACTATATAGACCAAATTATGTGATTTCCCAAGCATGGAATGCTCTGGAAATTGCTCGAA
1 GACAAAA-TATTTAGACCAAATGATGTCATTTCCCAAGCATGGAATG-TTTGAAAATTGCTCGAA
* * ** **
17907725 GGATTGGATCGTCTTGAATGCTTTAAGGAACCAAAGTT-TGACAAGTTCAGAGGTTCATCTAA--
64 GGATTGGATCGTCTTGAATACTTTAATGAA-CAAAGTTAT-A-AA----AGA-ACTCATAAAAGT
* *** * * *** * * *
17907787 -TAACTAAGAGAGAAACAATTC-T-CACGTAA--AA-A-AGATTTTAGTGC-AAAG-ACCAA-AA
121 TTGAC-AAGTTCG-AA-AGTTCGTCCAAG-AACCAAGAGAGA-AACAATTCTCAAGTA--AATAA
* *
17907842 CTTGTTT-A--CAAAATGA-C-AAACTAT-TTTGAC-CAA-
179 GTT-TTTAATTC-AAA-GACCAAAACT-TGTTT-ACAAAAT
*** * * * ** * *
17907875 -ACAATGCGATTT---CC---CGA-G-CA-TT-----GAAT-G--TT-CAGAAAATTGATCGAAT
1 GACAA-AATATTTAGACCAAATGATGTCATTTCCCAAGCATGGAATGTTTGAAAATTGCTCGAAG
* * * * *
17907921 GATTGGATCGTCTTGAATACTTTAACGAACCGAAGTTATGAAAGAACTCGTAAAATTTTGACAAG
65 GATTGGATCGTCTTGAATACTTTAATGAA-CAAAGTTATAAAAGAACTCATAAAAGTTTGACAAG
* * ** *
17907986 TTCGAAAGTACGTCCAATAACCAAGAGAGAAATTATTCT-AACATAAATAAGTTTTTAATTCAAA
129 TTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAA-GTAAATAAGTTTTTAATTCAAA
* * * *
17908050 TACCAAAACATGATTACCAAAT
193 GACCAAAACTTGTTTACAAAAT
* * * * * * * * *
17908072 GATAAACTATTTTGACCAAATGACGTGAGTT-CCAGAGCATGGAATTTTTGAAAAATTACTCGTA
1 GACAAAATATTTAGACCAAATGATGTCATTTCCCA-AGCATGGAATGTTTG-AAAATTGCTCGAA
* * *
17908136 TGATTGGATCGTCTTGAATACTTTAACGAACCGAAGTTATGAAAA-AACTCATAAAAGTTTGACA
64 GGATTGGATCGTCTTGAATACTTTAATGAA-CAAAGTTAT-AAAAGAACTCATAAAAGTTTGACA
* * * **
17908200 AGTTC-AGAAGTTCATCCACGAACCAAAAGAGAAATGATTCTCACA-TAAATAAGTTTTTAATTC
127 AGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA-AGTAAATAAGTTTTTAATTC
* *
17908263 AAAGGCAAAAACTTGTTTACAAAAT
190 AAAGACCAAAACTTGTTTACAAAAT
* * * * ** * *
17908288 GACAAACTATGTGGACCAAATGATGTGATTTCCTGAGCATGGAATGTTCGGAAAATTTCTCGAAG
1 GACAAAATATTTAGACCAAATGATGTCATTTCCCAAGCATGGAATGTT-TGAAAATTGCTCGAAG
* * * *
17908353 GATTGGATCATCTTGAATACATT-ATGGAACAGATGTTA-AAAAGGAGCTCATAAAAGTTTGACA
65 GATTGGATCGTCTTGAATACTTTAAT-GAACA-AAGTTATAAAA-GAACTCATAAAAGTTTGACA
* * * * *
17908416 ACTTC-AGAAGTTCGTCCAAGAACCGAA-AGAGAAAAAAATCTCACGTCAATAAGTTTTTAATTC
127 AGTTCGA-AAGTTCGTCCAAGAACC-AAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTC
* *
17908479 AAATACCAAAACTTGTTTACAAAAA
190 AAAGACCAAAACTTGTTTACAAAAT
** *
17908504 GACAACCTATTTAGACC-AA--ATG--A--T--CGAGCATGGAATGTTCTGAAAATTGCTCGAAG
1 GACAAAATATTTAGACCAAATGATGTCATTTCCCAAGCATGGAATGTT-TGAAAATTGCTCGAAG
* * * ** * * *
17908560 GAATGGATCATCTTGAATACTTTAACGAATTGAAGTTGTAAAAGAACTCGTAAAAGTTTCACAAG
65 GATTGGATCGTCTTGAATACTTTAATGAA-CAAAGTTATAAAAGAACTCATAAAAGTTTGACAAG
* * * *
17908625 TTC-AGAAGTTCATCCTAGAACGAAGAGAGAAACAATTCTCACA-TAAATAAGTTTTTAACTCAA
129 TTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA-AGTAAATAAGTTTTTAATTCAA
*
17908688 GGACCAAAACTTGTTTACAAAAT
192 AGACCAAAACTTGTTTACAAAAT
* * * * * * *
17908711 GA-AAAACTATATAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTCAGGAAATTGTTCGAA
1 GACAAAA-TATTTAGACCAAATGATGTCATTTCCCAAGCATGGAATGTT-TGAAAATTGCTCGAA
* *
17908775 AGATTGGATCATCTTGAATACTTT
64 GGATTGGATCGTCTTGAATACTTT
17908799 TTGGAACCAA
Statistics
Matches: 1574, Mismatches: 297, Indels: 244
0.74 0.14 0.12
Matches are distributed among these distances:
189 8 0.01
190 8 0.01
191 6 0.00
192 5 0.00
193 11 0.01
194 11 0.01
195 55 0.03
196 10 0.01
197 6 0.00
198 3 0.00
199 1 0.00
200 5 0.00
203 2 0.00
204 1 0.00
205 3 0.00
206 12 0.01
207 314 0.20
208 13 0.01
209 2 0.00
210 6 0.00
211 7 0.00
212 3 0.00
213 7 0.00
214 14 0.01
215 43 0.03
216 931 0.59
217 50 0.03
218 10 0.01
219 5 0.00
220 5 0.00
221 9 0.01
222 8 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (214 bp):
GACAAAATATTTAGACCAAATGATGTCATTTCCCAAGCATGGAATGTTTGAAAATTGCTCGAAGG
ATTGGATCGTCTTGAATACTTTAATGAACAAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTT
CGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGAC
CAAAACTTGTTTACAAAAT
Found at i:17907424 original size:432 final size:432
Alignment explanation
Indices: 17906590--17922376 Score: 17234
Period size: 432 Copynumber: 36.8 Consensus size: 432
17906580 GGGTGTTACA
* * * * * * *
17906590 GACAAACTATTTAGACCAACTGATGCGATTTCCTGAGCATAGAAAGTTTGGAAAATTTCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * **
17906655 GATTGGATTGTCTTGAATACTTTATGGAACCGAAGTTATAAAAGAACAT-GTAAAAGTTTTTCAA
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC-TCGTAAAAGTTTGACAA
* * * * * * *
17906719 GGTCGGACGTTCCTCCAAGATCCAAGAGAGAAACAATTCTCAAGCAAATAATTTTTTAATTCAAA
130 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* ** *
17906784 GACCAAAACTTGTTTACAAAATGGCAAAAAATTTAGACCAAATGATGTC-ATTTCCCAAGCATGG
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCCCGAGCATGG
* * * * *
17906848 AATGTT-TGAAAAATGACTCGAAGGATTGAATCGTATTGAATACATTAAAGAAC-GAAAGTTATA
259 AATGTTCAGAAAATTG-CTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAG-AAGTTATA
* * * ** * *
17906911 AAA-AACTCGTAAAAGTTTAAACAAGTTTGAAAGTTTTTCCAATAAGCAAGAGAGAAACAATTCT
322 AAAGAACTCGTAAAAGTTT-GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
17906975 CACGTACATAGGTTTTTAATTCAAAGACCAAAACATGATTACCAAAT
386 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * * * * * * *
17907022 GACAAATTATTTTGACCAAATGATGTGATTTCCAGAGCATGGAATTTTTGGAAAATTACTTGAAT
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
** * * * *
17907087 GATTGGATTATCTTGAATACTTTAACGAACAGAAGTTATGAAAGAACTCATAAAAGTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* *
17907152 TTCGGAAGTTCGTCCACGAACCAAGAGAGAAACGATTCTCACGTAAATAAGTTTTTAATTCAAAG
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * *
17907217 ACCAAAACTTGTTTACAAAATGACAAACTATGTGGACCAAATTATGCGATTTCCTGAGCATGGAA
196 ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
** * *** *
17907282 TGTTCAGAAAATTGCTCGAAGGATTGGATAATCTTGAATACATTATTCAACAGATGTTATAAAAG
261 TGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAAAG
* ** * * * * ** *
17907347 AGCTTATAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGGACCAAAAGGGAAAAAAAACTCACAT
326 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
* *
17907412 CAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAA
391 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
*
17907454 GACAACCTATTTAGACC-AA--AT--GA--T--CGAGCATGGAATGTTC-AGAAAATTGCTCGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
* * ** * *
17907509 GGAATGGATTGTCTTGAATACTTTAATTAACTGAAGTTATAAAAGAACTCGTATAAA-TTTCACA
65 GGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA-AAAGTTTGACA
* * * ** *
17907573 AGTTCAGAAGTTCATCCTAGAATGAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATT-AA
129 AGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * * *
17907637 AGGACCAAAACTTGTTTACAAAATGAAAAACTATATAGACCAAATTATGTGATTTCCCAAGCATG
194 A-GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * *
17907702 GAATGCTCTGGAAATTGCTCGAAGGATTGGATCGTCTTG-A-A---T---G--C-----TT-T-A
258 GAATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAA
* * * * * * *
17907750 AGGAAC-C---AAAGTTTGACAAGTTCAGAGGTTCATCTAATAACTAAGAGAGAAACAATTCTCA
323 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
17907811 CGTAAAAAAGATTTTAGTGCAAAGACCAAAACTTGTTTACAAAAT
388 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* ** * *
17907856 GACAAACTATTTTGACCAAACAATGCGATTTCCCGAGCATTGAATGTTC-AGAAAATTGATCGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
* * * *
17907920 TGATTGGATCGTCTTGAATACTTTAACGAACCGAAGTTATGAAAGAACTCGTAAAATTTTGACAA
65 GGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * ** * *
17907985 GTTCGAAAGTACGTCCAATAACCAAGAGAGAAATTATTCTAACATAAATAAGTTTTTAATTCAAA
130 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * * * * * * * *
17908050 TACCAAAACATGATTACCAAATGATAAACTATTTTGACCAAATGACGTGAGTTCCAGAGCATGGA
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
** * * * * *
17908115 AT-TTTTGAAAAATTACTCGTATGATTGGATCGTCTTGAATACTTTAACGAACCGAAGTTATGAA
260 ATGTTCAG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTAT-AA
* * * * * **
17908179 AA-AACTCATAAAAGTTTGACAAGTTCAGAAGTTCATCCACGAACCAAAAGAGAAATGATTCTCA
323 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
17908243 CATAAATAAGTTTTTAATTCAAAGGCAAAAACTTGTTTACAAAAT
388 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * * *
17908288 GACAAACTATGTGGACCAAATGATGTGATTTCCTGAGCATGGAATGTTCGGAAAATTTCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * * * *
17908353 GATTGGATCATCTTGAATACATTATGGAACAGATGTTA-AAAAGGAGCTCATAAAAGTTTGACAA
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA-GAACTCGTAAAAGTTTGACAA
* * * * *
17908417 CTTCAGAAGTTCGTCCAAGAACCGAA-AGAGAAAAAAATCTCACGTCAATAAGTTTTTAATTCAA
130 GTTCGGAAGTTCGTCCAAGAACC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * *
17908481 ATACCAAAACTTGTTTACAAAAAGACAACCTATTTAGACC-AA--AT--GA--T--CGAGCATGG
194 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
* * * * ** *
17908537 AATGTTCTGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAACGAATTGAAGTTGTAAA
259 AATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAA
* * * * *
17908602 AGAACTCGTAAAAGTTTCACAAGTTCAGAAGTTCATCCTAGAACGAAGAGAGAAACAATTCTCAC
324 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * *
17908667 ATAAATAAGTTTTTAACTCAAGGACCAAAACTTGTTTACAAAAT
389 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * * *
17908711 GAAAAACTATATAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTC-AGGAAATTGTTCGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
* * *
17908775 AGATTGGATCATCTTGAATAC-TT------------TT-T---GGAAC-C---AAAGTTTGACAA
65 GGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * * * * **
17908819 GTTCAGAAGGTCATCCAATAACCAAGAGAGAAACAATTCTCACGTAAAAAAGATTTTAGTGGAAA
130 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* ** **
17908884 GACCAAAACTTGTTTACAAAATGGA-AAACTATTTTGACCAAACAATGCGATTTCCCGAGCATTC
195 GACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
* * * * * * * *
17908948 AATGTTCAAAAAATTGATCAAATGATTGAATCGTCTTGAATACTTTAATGAACTGAAGTTATGAA
259 AATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAA
* * * * *
17909013 AGAACTCGTGAAAGCTTGACAAGTTCGAAAGTTCGTCCACGAACCAAGAGAGAAACAA-TCACAC
324 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * *
17909077 CTAAATAAATTTTTAATTCAAAGACCAAAACTTGATTACAAAAT
389 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * *** * * * *
17909121 GACAGACTAGTTAGACCAAATGATGCGATTTCTTAAACATGGAATATTCGAAAAATTGCTTGGAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * *
17909186 GATTGGATCATCTTGAATACTTTATGGAACCGATGTTATAAAAGAACTCGTAATAGTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * * *
17909251 TTTGGAAATTCATCTAAGAACCAAGAGAGAAATAAATCTCACGTAAATAA-TTTTTGAATTCAAA
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT-AATTCAAA
* *
17909315 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCTGAGCATGGA
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * * * *
17909380 ATGCTCGGAAAATTGCTTGAACGATTGGATCGTCTTGAATACTTTAACGAACTGAAGTTATGAAA
260 ATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAAA
* * * * *
17909445 GAACTTGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCACGAACCAAGAGAGAAACAATTGTCAAG
325 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
17909510 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
390 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * ** * *
17909553 GGCAAACTATTTAGACAAAATGATGCGATTTCTTGAGCATGGATTGTTCGGAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * *** *
17909618 GAATGGATCGTCTTGAATACTTTAAGAAATAAAAGTTATAAAAGATCTCGTAAAAGTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * ** * *
17909683 TTCAGAAGTTCGTCTAAGAACCTAGAG-GCAAATTATTCTCACGTAAATAAGTTTTCAATTCAAG
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * * *
17909747 GACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAACTGATTCGATTTTCTGAGCATGGA
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * *
17909812 ATGTTC-GAAAAATTGCTCGAAGGATTGGATCATCTTGAAAATTTTAAGGAATAGAAGTTATAAA
260 ATGTTCAG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAA
* * * * * *
17909876 AGAACTCGTAAAAGTTTGAGAAGGTCGAAAGTTCGTCCAATAACCAGGAGAGAGACAATTCTCAC
324 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
17909941 GTAAATAA-TTTTTAAATTCAAAGACCAAAACTTGTTTACAAAAT
389 GTAAATAAGTTTTT-AATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * * * *
17909985 AACAAACTATTTTGACCAAATGATGCGATTTCTCGAGCATGGAATGATCAAAAAATTGCTCAAAT
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * ** * *
17910050 GATTAGATCATCTTGAATACTTTAAATAACTGAAGTTATGAAAGAACTCGT-AAAGCTTTGACAA
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG-TTTGACAA
* * *
17910114 GATCGAAAGTTCGTCCACA-AACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTAATTCAA
130 GTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * *
17910178 GGACCAAAACTT-TTTCACAAAATGGA-AAACTATTTTGACCAAATGATGCTATTTCCC-AGGCA
194 AGACCAAAACTTGTTT-ACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCA
* * * *
17910240 TGGAATGTTCAAAAAATTGCTCGAATGATTGGATCGTCTTGAATACTTTAACGAACCGAAGTTAT
256 TGGAATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTAT
* * * * * * ** *
17910305 GAAAGAACTCATAAAAGATTGACAAATTCTGAAGGTCAACCACGAACCAAGAGAGAAACAATTCT
321 AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* *
17910370 CAAC-TAAATAAGTTTTTAATTCAATGACCAAAATTTGTTTACAAAAT
386 C-ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* ** * * ** * * ** *
17910417 GGCAAACTATTTAGATAAAATGTTGCAATTTCTTGATCATTGAATGCTT-G-AAAATTTTTTGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCGAA
* * *
17910480 GGAATGGATCGTCTTGAATACTTTAAGGAAACAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
65 GGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * ** * * * *
17910545 GTTCGAAAGTTCGTCTAAGAACCAAGAGTCAAATAATTCTCATGTAAATATGTTTTTAATTCAAG
130 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * *
17910610 GACCAAAACTTGTTTGCGAAATGACAAACTATTTAGACCAACTGATGCGATTAT-CCGAGCATGG
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT-TCCCGAGCATGG
* * * *
17910674 AATGTTCCA-AAAATTGCTCGAAGGATTGGATCATCTTGAATACATTAAGGAGCCA-AAGTTATA
259 AATGTT-CAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGA-ACAGAAGTTATA
* * *
17910737 AAAGAAGTCGCAAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
322 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * *** *
17910802 ACGTAAATAACTTTTTAATTTAATGATGGAAACCTGTTTA-AAAAT
387 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * *
17910847 AACAAACTATTTATACCAAATGATGTGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
* * *
17910911 GGATTGCATCGTCTTGAATACTTTAATGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
65 GGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* *
17910976 GTTCGG-AGCTTCGTCAAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
130 GTTCGGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * *
17911040 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAACTAATGTGATTTTCCGAGCATGG
194 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
* * * *
17911105 AATGTTAAGAAAATTGCTCGAAGGATTGAATCATCTTGAATACTTTAAGGAACAGAAGTTATAAA
259 AATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAA
* * *
17911170 AGAACTCGTAAAAGATTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAT
324 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * *
17911235 GTAATTAATTTTTTAATTCAAAGACCAAAACTTGTTT-TAAGAT
389 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * * * *
17911278 GGCAAACTATTTATACCAAATGATGCGATTTTCTGAGCATTGAATGTTCAAAAAATTGCTCAAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * *
17911343 GATTGCATCCTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * ** * * * *
17911408 TT-TGAATCTTCGTAGAATAACTAGGAGAGAAACAATTCTCACGTAAATAAATTTTTAATTCAAA
131 TTCGGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * * *
17911472 GACCAAAACTTTTTTACAAAATGAAAAACTATTTTGAGCAAATGATGCGATTTCACGAGCATGGA
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * * *
17911537 ATGTTCGGAAAATTGCTCGAATGATTGCAAT-GTCTTGGATACTTTAACGAACTA-AAGTTATGA
260 ATGTTCAGAAAATTGCTCGAAGGATTG-GATCGTCTTGAATACTTTAAAGAAC-AGAAGTTATAA
* * * * *
17911600 AAGAACTCGTAAAAGTTTGACATGTTCGGAAGTTCGTTCATGAACCAAGAGAGGAACAATTCTTA
323 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
17911665 TGTAAATAAGTTTTTAATTCAAACACGAAAACTTTTTTACAAAAT
388 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
** ** **
17911710 GACAAACTATTTAGAAGAAATGATGCGATTTCTTGAGCATAAAATGTTCGAAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * * * *
17911775 TATTGGATCGTCTTGAAAACTTTATGGAATCGATGTTATAAAAGAATTCGTAAAATTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * ** * * * * *
17911840 TTCGAAAGTTTGTCCAAGAGTCAAGAGAGAAAAAAATCTCACATCAATAAGTTTTTAATTTAAAG
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * *
17911905 ACCAAAACTTGTTTACAAAAAGACAAACTATTTAGGCC-AA--AT--GA--T--CGAGCACGGAA
196 ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * ** * *
17911961 TGTTCGGAAAATTTCTCGAAGGAACGGATCGTCTTGAATACATTAACGAACTA-AAGTTATAAAA
261 TGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAAC-AGAAGTTATAAAA
** * *
17912025 GAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACG
325 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
17912090 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
390 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * * * *
17912133 TACAATCTATTTTGACCAAATGATGCGATTTCTCGAGCATAGAATGTACGAAAAATTGCTCGAAT
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * * *
17912198 AATTGGATCGTCTTGAAAACTTTAACGAATCGAAGTTATGAAAGAACTCGTAAAATTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * *
17912263 ATCGGAAGTTCGTCCACA-AATCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA
131 TTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * *
17912327 GACCAAAACTTGTTTACAAAATGGCAGACTATTTTGACCAAATGATGCTATTTCCCGAGCATGGA
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * *
17912392 ATGTTCAGAAAATTGCTCGAATGATTGGATCATCTTGAATACTTTAACGAACTGAAGTTATGAAA
260 ATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAAA
* * * * *
17912457 GAACTCGTAAAAGTTTGACAAGTTCAGATGTTCATCCATGAACCAAGAGAGAAACAATTCTCAAG
325 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * *
17912522 TAAATAAGTCTTTAATTCAAAGACCAAAACTAGGTTACAAAAT
390 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * * *** *
17912565 GGCACATTATTCAGACAAAATGATGCGATTTATTGAGCATGGAATGTTCGAAAAATTTCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * *
17912630 GAATGGATCGTCTTGAATACTTTAAAGAACCTACGTTATAAAAGAACTCTTAAAAGTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
** * * * * *
17912695 TTCAAAACTTCGTCTAAGAACCAAGAGACAAATAATTCTCACGTAAATAA-ATTTTAATT-AAAG
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-
* **
17912758 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAACTGATGCGATTTTTCGAGCATGGA
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
** * * * *
17912823 ATGTTTGGAAAATTACTCGAAGGATTGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAA
260 ATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAAA
* * *
17912888 GAACTTGTAAAAGTTTGACAAGGTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
325 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* *
17912953 T-AATAATTTTTTAATTTAAAGACCAAAACTTGTTTA-AAAAT
390 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * *
17912994 GATAAACTATTTATACCAAATGATGCGATTTCCCGAGCATGGAATGTT-TAGAAAATTGCTCGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
* ** ** * *
17913058 TGATTTCATAATTTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
65 GGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * *
17913123 GTTCGG-AGCTTCGTCCAATAACCAAGAGAGAAACAATTCGCACGTAAATAAGTTTTTAACTCAA
130 GTTCGGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * * * *
17913187 AGACCAAAAGTTGTTCACAAAGTGACAAACTATTTTGACCAAATGACGTGATTTCCCGAGCATGG
194 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
* * * * *
17913252 AATGTTCGGAAAATTGCTCGAATGATTGGATCGTCTTGAATACTTTAACGAACCA-ATGTTATGA
259 AATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAA-CAGAAGTTATAA
* * * * * *
17913316 AAGAACTCGTAAAAGTTTAAGAAGATCGAAAGTTCATCCACA-AACCAAGAGAGGAACAATTCTC
323 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTC
* * * *
17913380 ATGTAAAAAAGTTTTTAATTCAAAGACCAAGACTTGCTTACAAAAT
387 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * * * *
17913426 GGCAAACTATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATCGCTTGAAT
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * *
17913491 GATTGGATCGTCTTGAATACTTT-AGCGAATCAAAGTTATGAAAGAACTCGTAAAAGTTTGACAA
66 GATTGGATCGTCTTGAATACTTTAAG-GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * * *
17913555 GTTCAGAAGTTCGTCCACA-AACCAAGAGAGAAACAATGCTAAAGTGAATAAGTTTTTAATTTAA
130 GTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * ***
17913619 AGACTAAAACTTGTTTACAAAATGGA-AAATTATTTAGACCAAATAATGCGATTTCTTAAGCATG
194 AGACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * * * * ** * *
17913683 GAATGTTCGGAAAATTGCTTGAAGGAATGGATCATCCTGAATACTTTATGGAACCGATGTTATAA
258 GAATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAA
* ** * * * *
17913748 AAGAACTCGTAATAGTTTGACAAGTTTAGAAGTTCATCTAAGAACCCAA-AGACAAATAATTCTC
323 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTC
*
17913812 ACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
387 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * ** * * *
17913858 GACAAACTATTTAGACCAATTGATACGATTTCTTGAGCATTGAATGTTCGGAAAATTGCTCAAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
** * * * *
17913923 GATTGGATAATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGATTAATAA-
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * *
17913987 TGTCGGGAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAGGTAATTAA--TTTT--TT----
131 T-TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * *
17914044 ----AAAACTTGTTTACAAAATGACAAACTATTTAGATCAAATGATGCAATTTCCCGAGTATGGA
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * *
17914105 ATGTTC-GAAAAATTTCTCGAATGATTGGATCATCTTGAATGCTTTAACGAACAGAAGTTATAAA
260 ATGTTCAG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAA
** * * * *
17914169 AGAACTCGTAGGAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGGGAGAAACAAATCTCAC
324 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * *
17914234 GTAAATAAGTTTCTAATTCAAGGACAAAAACATT-TTTACAAAAT
389 GTAAATAAGTTTTTAATTCAAAGACCAAAAC-TTGTTTACAAAAT
* * * * * * *
17914278 GAAAAACTATTTAGACCAAATTATGCAATTTCCCGAGCAAGGAATGTTCGGAAAATTTCTTGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * *
17914343 GATTGGATCGTCTTAAACACTTTAAGGAACCGAAGTTATAAATGAACTCATAAAAGTTTGACTAA
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AA
* * * * * * * * * *
17914408 -TTTGAAAGTTAGTCCCATAACCAGGAGAGAAACAATTGTCACGAAAATAAGATGTTAATTCAAA
130 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * ** * * * *
17914472 GACCAAAACTTGTTTACAAAATGAAAAATTATTTTCATCAAGTGATGCGATTTCTCGAGAATGGA
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * *
17914537 ATGTTC-GAAAAATTACTCGAATGATTTGATCGTCTTGAATACTTTAACA-AACCGAAGTTATGA
260 ATGTTCAG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAA-AGAACAGAAGTTATAA
* * ** *
17914600 AAGAACTCGTAAAATTTTGACAAGTTTGGAAGTTCGTCCACA-AATGAAGAGAGAAAAAATTCTC
323 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTC
* *
17914664 ACATAAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTACAAAAT
387 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * ** **
17914710 GAAAAACTATTTAGACTAAATGATTTGATTTCTTGAGCATGGAATGTTCGAAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
** * * * * *
17914775 GATTCAATAGTCTTGAATACTTTATGGAACCGATGTTATAAAAGAACACGTAATAA-TTTGAGAA
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA-AAGTTTGACAA
* * * *
17914839 GTTCAGAAGTTTGTCCAAGAACCAAGAGAGAAATAATTCTCTCGTAAATAA-TTCTTTAATTCAA
130 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT-TTTAATTCAA
*
17914903 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGG
194 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
* * * * *
17914968 AATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATGCTATAAGGAACCA-AAGTTATAA
259 AATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAA-CAGAAGTTATAA
* * ** * *
17915032 AAGAACTCGTAAAGGTTTAACAAGTTTAGACGTTCGTCCAAGAAGCTAA-AGAGAAACAATT-TC
323 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCT-
* *
17915095 CACGTAAATAATTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAA
386 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * **
17915142 GAAAAACTACTTACACCAAATGATGCGATTTCCCGAGCATGAAATGTTCTG-AAAATTGCTTAAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTGCTCGAA
* * * * *
17915206 GGAATGGATCGTCTTGAATACTTTAATGAACCGAAGTCATGAAAGAACTCGTAAAAGTTTGACAT
65 GGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * *
17915271 GCTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAG
130 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * *
17915336 GACCAAAACTTGTTTACAAAATAAAAAACTATTTAAACCAATTGATGCGATTTCCCGAGCATGGA
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * *
17915401 ATGTTC-GAAAAATTGCTCGAAGGATTGCATCATCTTGAATACTTTAAGGAATC-GAAGTTACAG
260 ATGTTCAG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAA-CAGAAGTTATAA
* * * * * *
17915464 CAGAACTCATAAAAGTTTGACAAGGTCAGAAGTTCATCCAAGTACCAAGAGAGAAACAATTCTCA
323 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* *
17915529 CGTAAAATAATTTTTTAATTCAAAGACCAAAACTTGTTTA-AAGAT
388 CGT-AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* *
17915574 GACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTC-AGATAATTGCTCGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
* * *
17915638 GGATTGCATCGTCTTGAATACTTTATGGAATCGAAGTTATAAAAGAACTCG-AAAAGGTTTGACA
65 GGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA-GTTTGACA
* * * *
17915702 AGTTC-GAAGCTTCGTCTAATAACCAAGAGAGAAACAATTTTCACGTAAATAAGTTTTTCATTCA
129 AGTTCGGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * ** * * * *
17915766 AAGATCGAAACTTCCTTACAAAAAGGA-TAACTATTTTGAGCAAATGATGCGATTTCCCGAGCAT
193 AAGACCAAAACTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * ** * * *
17915830 GGAATGTTC-GGAAATTGCTGGAATGATTATATCGTCTTGGATACTTTAATGAACTGAAGTTATA
257 GGAATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATA
* * * *
17915894 AAAGAACTCATAAAAGTCTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
322 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * *
17915959 ATGTAAATAAGTTTTAAATTCAAAGACCAAAACTTTTTTACAAAAT
387 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * *
17916005 GACAAACTATTTAGACTAAATGATGCAATTTCCCGAGCATGGAATGTTCGAAAAATTTCTCGAAT
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * * * *
17916070 GATTGGATCATCTTGAATACTTTAACGAACAGAAGTTATCAAAGAACTTGTAAGAGTTTTACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * * *
17916135 TTCAGAAGTTCATCCAAGAACCAAGGGAGAAACAATTCTCATGTAAATAAGTTTCTAATTCAAGG
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * *
17916200 ACAAAAACTTGTTTACAAAATGA-ACAACTATTTAGACCAAATGATGCAATTTCCCGAGCAGGGA
196 ACCAAAACTTGTTTACAAAATGACA-AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * * *
17916264 ATGTTCAGAAAATTTCTTGAAGGATTAGATCGTCTTAAACACTTTAAGGAACCA-AAGTTATAAA
260 ATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAA-CAGAAGTTATAAA
* * * * * * *
17916328 TGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCTATAACCAGGAGAGAAACAATTGTCAT
324 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* *
17916393 GTAAATAAGATGTTAATTCAAAGACCAAAACTTGTTTACAAAAT
389 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
** * * * * * * *
17916437 GA-AAACTATTTTCATCAAATGATGTGATTTTCCGAGAATGAAATGTTCGAAAAATTGCTCAAAT
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
** ** *
17916501 GATTGGATCGTCTTGAATACTTTAACAAACCGAAGTTACGAAAGAGCTCGTAAAAGTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* ** * * * * *
17916566 TTCGGAAGTTCGTCCATGAATGAATAGA-AAAAAATCCTAACGTAAATAAGTTTTTAATTGAAAG
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* **
17916630 ACCAAAACTTGTTTACAAAATGA-AAAGCTATTTAGACCAAATGATTCGATTTCTTGAGCATGGA
196 ACCAAAACTTGTTTACAAAATGACAAA-CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * * *
17916694 ATGTTC-GAAAAATTGCTCGACGGATTCGATAGTCTTGAATACTTT-ATGTAACCGATGTTATAA
260 ATGTTCAG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAG-AACAGAAGTTATAA
* *
17916757 AAGAACTCGTAATAA-TTTGACAAGTTCGG-AGCTTCGTCCAATAACCAAGAGAGAAACAATTTT
323 AAGAACTCGTAA-AAGTTTGACAAGTTCGGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCT
* *
17916820 CACGTAAATAAGTTTTTAATTCAAAGACCGAAACTTGTTT-CGAAAAAG
386 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC--AAAAT
* * * * *
17916868 GA-AATCTATTTTGAGCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTGGAAT
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * ** * *
17916932 GATTGGATCGTCTTGGATACTTTAACGAACTGAAGTTATAAAAGATGTCATAAAAGTTTGATAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
** * * * *
17916997 TTTAGAAGTTCATCCAAGTACCAAGAGAGAAACAATTCTGACGTAAATAAGTTTTTAATTCAAGG
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
** * * * * *
17917062 AAAAAAAACTTGTTTAAAAAATGA-AAATTAGTTAGACCAAATGATGCAATTTCCCGAGCAAGGA
196 -ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * *
17917126 ATGTTC-GAAAAATTGCTCGAAGGATTGGATCATCTTAAATACTTTAAGGAGTC-GAAGTTATAA
260 ATGTTCAG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGA-ACAGAAGTTATAA
* * * * * * * *
17917189 ATGAACTCGTAAAAGTTTGACAATTTTGAAAGTTTGTCCTATAACCAGGAGAGAAACAATTCTCA
323 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
17917254 CGTAAATAAGATGTTAATTCAAAGACCCAAACTTGTATACAAAAT
388 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* ** * *
17917299 GAAAAACTATTTTCACCAAATGATGCGA-TTCCTCGAGCATGGAATGTTTGGAAAATTGCTCGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCC-CGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * *
17917363 TGATTGGATCGTCTTAAATA-TTGTAACGAACTGGAA-TTATGAAAGAACTCGTAAAAGTTTGAC
65 GGATTGGATCGTCTTGAATACTT-TAAGGAAC-CGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * * * *
17917426 AAGTTCGGAAGTTCGTCCACGAACGAAGAGAGAGAA-AATTCTAATGTAAATAAGGTTTTAATTG
128 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA-AACAATTCTCACGTAAATAAGTTTTTAATTC
* * * ** *
17917490 AAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATTCAATTTCTTGAGAAT
192 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * ** *
17917555 GGAATGTTC-GAAAAATTGCTCGAAGGATTCGTTAGTCTTGAATACTTTATGGAACCA-ATGTTA
257 GGAATGTTCAG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAA-CAGAAGTTA
* * * * *
17917618 TTAAAGAACTCGTAATAGTTTGACAAGTTCAGACGTTCGTCCAAGAACCTAGAGAGAAACAATTC
320 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * *
17917683 TCACGTAAATAATTTTTTAAATCAAAGACCAAAACTTGTTTACAAAAA
385 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* *
17917731 GACAAACTACTTAGACCAAACGATGCGATTTCCCGAGCATGGAATGTTCTG-AAAATTGCTCGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTGCTCGAA
* ** *
17917795 GGAATGGATCGTCTTGAATACTTTAATTAACCGAAGTCATAAAAGAACTCGTAAAAGTTTGACAA
65 GGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * *
17917860 GTTCAGAAGTTCATCCAAGAACCAAGA-AGAAATAATTCTCACATAAATGAGTTTTTAATTC-AA
130 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * * *
17917923 GTACCAAAACTTGTTTACAAAATGAGAAATTATTTAGACCAAATGATGTGATTTCTCGTGCATGG
195 G-ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
* * *
17917988 AATGTTCAAAAAATTGTTCGAAGGATTGGAT-GATCTTGAATACTTTAAGGAACCA-AAGTTATA
259 AATGTTCAGAAAATTGCTCGAAGGATTGGATCG-TCTTGAATACTTTAAAGAA-CAGAAGTTATA
* * * * *
17918051 AATGAACTCATAAAATTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAGCAATTCTC
322 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
** * *
17918116 TTGTAAATAATTTTTTAATTCAAATACCAAAACTT-TTTA-AGAAAT
387 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA-AAAT
* **
17918161 G-CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTAAAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * *
17918225 GATTGGATCGTCTTGAATATTTTAAGGAACTGCAGTTATAAAAGAACTCATAAAAGTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * * *
17918290 TTCGAAAGTTCGTCCTATAACCATGAGAGAAACAATTCTCATGTAAATAAGATTTTAATTCAAAG
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * *
17918355 ATCAAAACTTGTTTACAAAATGGA-AAACTATTTTGACCAAATGATGCGATTTCTCGAGCGTGGA
196 ACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* *
17918419 ATGCTT-AGAAAATTGCTCGAA-TATTTGGATCGTCTTGAATACTTTAACGAATC-GAAGTTA-A
260 ATG-TTCAGAAAATTGCTCGAAGGA-TTGGATCGTCTTGAATACTTTAAAGAA-CAGAAGTTATA
17918480 GAAAGAACTCGTAAAA-TTTGACAAGTTCGGAAGTTCGTCCACA-AACCAAGAGAG----AA---
322 -AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTC
* *
17918536 --AC-T--ATAAGTTTTTAATTCAAATACAAAAACTTGTTTACAAAAT
385 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * *
17918579 GGA-AAACTATTTTGACCAAATGATGCGGTTTCCCGAGCTTGGAATGTTCGAAAAATTTCTCGAA
1 -GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* ** * * *
17918643 TGATTGGATTATCTTGAATACTTTAACGAATCGAAGTTATGAAAGAACTCGTAAAAGTTCT-ACA
65 GGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTT-TGACA
* * * ** * * * *
17918707 AATTCGGAAGTTCATCCACGAATGAAGAGAGAAAAAATTCTCGCGTAAATAAGTTTTTCATTGAA
129 AGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * ** *
17918772 AGACCAAAACTTGTTTACAAAATGAAAAACTATTTAAACCAAATGATTCGATTTCTTGAGCATAG
194 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
* * * * *
17918837 AGTGTTCCA-AAAATTGCTCGAAGGATTCGATAGTCTTGAATACTTTATGAA-ACCA-ATGTTAT
259 AATGTT-CAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTA--AAGAACAGAAGTTAT
* * ** * *
17918899 AAATGAACTCGTAATAA-TTTGATAAGTTTAGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTT
321 AAAAGAACTCGTAA-AAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * *
17918963 TCATGTAAATAATTTTTTAATTCAAAGACTAAAACTTGTTTACAAAAT
385 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* **
17919011 GACAAACTATTCAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCGAAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * * *
17919076 GAATGGATCGTCTTGAATACTATATGGAGCTGAAGTTATAATAGAACTCGTAAAAG-TT-ATCAA
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAA
* * ** * **
17919139 GTTCAGACGTTCGTCCAAG-ACC-CTAGAGAATCAATTCTCACGTAAATATTTTTTTAATTCAAA
130 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * *
17919202 GACCAAAACTTGTTTACAAAAGGACAAACTACTTAGACCAAATGATGCGATTTCCCAAGAATGGA
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * * *
17919267 ATGTTCTGAAAATTGCTCGAAGGAATGAATCTTCTTGAATACTTTAATGAACCA-AAGTCATAAA
260 ATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAA-CAGAAGTTATAAA
** *
17919331 AGAACTCGTAAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAC
324 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* *
17919396 ATAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAAT
389 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * *
17919440 GA-AATACTATTTAGACCAATTGACGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAA
1 GACAA-ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
** * *
17919504 GGATTGGATCAACTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGCTTGACAA
65 GGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * * *
17919569 GGTCAGAAGTTCATCTAAGAACCAAGAGAGAAAAAATTCTCA-GATAAAATAATTTTTTAATTCA
130 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG-T-AAATAAGTTTTTAATTCA
* * * *
17919633 AAGACCAAAACTCGTTTA-AAGATGACAAACTATTTAGACCAAAATAATGCAATTTCCCGAGCAT
193 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC-AAATGATGCGATTTCCCGAGCAT
* * * * **
17919697 GGAATTTTCAAAAAATTGCTCGAAGAATTGCATCGTCTTGAATACTTTATGGAACCA-AAGTTAT
257 GGAATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAA-CAGAAGTTAT
* * * * *
17919761 AAAAGAACTCGAAAAAGTTTGATAAGTTCTG-AGCTTCGTCCAATAACCAAGAGAGAAACAATTT
321 AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTC
* * * *
17919825 TCATGTAAATAAGTCTTTAATTCAAAGACCGAAACTTGTTTACAAAAAG
385 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAAT
* * * * *
17919874 GA-AAACTATTTTGAGCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTGGAAT
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * *
17919938 GATTGGATCGTCTTGGATACTTTAACGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * * *
17920003 TTCAGAAGTTCATCCAAGTACCACGAGAGAAACAATTCTCACGTAAATAACTTTTTAATTCAAGG
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
** * * * * *
17920068 AAAAAAACTTGTTTAAAAAATGAAAAACTATTTAGACAAAATGATGCAATTTCCCGAGCAAGGAA
196 ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * *
17920133 TGTTC-GAAAAATTGCTCGAAAGATTGGATCGTCTTAAATACTTT-AAGAAGCCGAAGTTATAAA
261 TGTTCAG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAA-CAGAAGTTATAAA
* * * * * * *
17920196 TA-AACTCATAAAAGTTTGACAAGTTTGAAAGTTTGTCCTATAACCAGGAGAGAAACAATTCTCA
324 -AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
17920260 TGTAAATAAGATGTTAATTCAAAGACCCAAACTTGTTTACAAAAT
388 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* ** * ** * * *
17920305 GAAAAACTATTTTCACCAAATGATGCAATTTCTTGAGCATGGAATGTTCGTAAAATTTCTCGAAT
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* ** * *
17920370 GATTGGATCGTCTTGAATACTGTAACAAATCGAAGTTATGAAAGAACTCGTAAAAGTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * * * * *
17920435 TTCGAAAGGTCGTCCATGAACGAAGAGAGAAAAAATTTTCACATAAATAAGTTTTTAATTGAAAG
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * ** *
17920500 ACCAAAACTTGTTCACAAAATGAAAAACCATTTTCACCAAATGATGCGATTTCTCGAGCATGGAA
196 ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * *
17920565 TGTTCAGAAAATTGCTCGAATGATTGGATCGTCTTGAATATTTTAAAGAACCGAAGTTATGAAAG
261 TGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAAAG
* * * * * *
17920630 AACTTGTAAAAGTTTGACAAGTTTGGAAGTTCATCCACGAACAAAGAGAGAAAAAATTCTCACGT
326 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
* *
17920695 GAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTACAAAAT
391 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * ** * *
17920737 TACAAACTATTTAGACCAAATGATTCGATTTCTTGAGCATGGGATGTTCAAAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * * * ** *
17920802 TATTGGACCGTCTTGAATACTTTATGGAATCGATGTTATAAAAGAACTCTTAATGGTTTGACAGG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * *
17920867 TTCGAAAGTTCATCCAAGAACCAAGTGAGAAACAATTCTCACGTAAATAATTTTTTAATTCAAAG
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * *
17920932 ACCAAAACTTGTTTGCATAATG-CAAACTATTTAGACCAAGTGAAGCGATTTCGCGAGCATGGAA
196 ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * *
17920996 TGTTC-GAAAAATTGTTCGAAGGAATGGATCGTCTTGAATACTATAAGGAACCGAAGTTATAAAA
261 TGTTCAG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAAA
* * * * * * **
17921060 GAACTCCTACAAGTTTGATAAGTTCAGACGTTCATCCAAGAATGAAGAGAGAAACAATTCTCACG
325 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
*
17921125 TAAATAATTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
390 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * * * *
17921168 GAAAAATTATTTAGAACAAATAATGCAATTTCTCGAGCATGGAATGTTC-AGAAAATTGTTCGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAA
* * *
17921232 GGA-TGGAT-GATCTTGAATACTTTAAGGAACTGATGTTATAAAAGAACTCAG-AAAAGTTTGAA
65 GGATTGGATCG-TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC-GTAAAAGTTTGAC
* * ** * ***
17921294 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAGCAAGTCTCTTGTAAATAAGTTCTTAACAAA
128 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* ** *
17921359 AATACCAAAACTT-TTTATGAAATG-CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATG
193 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * *
17921422 GAGTGTTC-GAAAAATTGCTCGAAGGATTGGATTGTCTTGAATACTTTAATA-AACTGAAGTTAT
258 GAATGTTCAG-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAA-AGAACAGAAGTTAT
* * * * * *
17921485 AAAAGAACCCGTAAAAGTTTGCCAAGTTCAGAAATTCATCCAAGAACCAA-ATGAGAAACAATTA
321 AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGA-GAGAAACAATTC
*
17921549 TCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAAT
385 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * * *
17921597 AAAAAATTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGTTCAAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * *
17921662 GATTGGAT-GATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGAAAA
66 GATTGGATCG-TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
** * ** * ***
17921726 GTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAGCAGCTCTCATGTAAATAAGTTTTTAACAAAAA
130 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * * *
17921791 TACCAAAACTT-TTTACTAAATG-TAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGA
195 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * * * **
17921854 GTGTTCAAAAAATTTCTCGAAGGATTGGATTGTCTTGAATACTTTATGGAACCA-AAGTTATAAA
260 ATGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAA-CAGAAGTTATAAA
* * * * *
17921918 AGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCTATAACCAAGAGAGAAACAATTCTCTC
324 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* *
17921983 GTAAATAAGATTTTAATTCAAAGGCCAAAACTTGTTTACAAAAT
389 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * * *
17922027 GAAAAACTATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGATCAAAT
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* * * * * **
17922092 GTTTGGATCATCTTGAATATTTTAATGAATCGAAGTTAGGAAAGAACTCGTAAAAGTTTGACAAG
66 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * * *
17922157 TTCAGAAGTTCATCCACGAACCAAGAGAGAAACGATTCTCATGTAAATAAGTTTTTAATTCAAAT
131 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * *
17922222 ACCAAAACTTGTTTACAAAATGAAAAACTATTTTGACCAAATGACGCGATTTCCCAAGTATGGAA
196 ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * * *
17922287 TGTTCGGAAAATTGCTTGAATGATTGGATCATCTTGAATACTTTAACA-AACCGAAGTTATGAAA
261 TGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAA-AGAACAGAAGTTATAAAA
17922351 GAACTCGTAAAAGTTTGACAAGTTCG
325 GAACTCGTAAAAGTTTGACAAGTTCG
17922377 AAAAATTTCT
Statistics
Matches: 12967, Mismatches: 2069, Indels: 638
0.83 0.13 0.04
Matches are distributed among these distances:
401 2 0.00
402 189 0.01
403 6 0.00
405 5 0.00
406 8 0.00
407 5 0.00
408 2 0.00
409 2 0.00
410 119 0.01
411 322 0.02
412 4 0.00
413 2 0.00
416 1 0.00
417 27 0.00
418 13 0.00
419 277 0.02
420 373 0.03
421 8 0.00
422 15 0.00
423 808 0.06
424 15 0.00
425 5 0.00
426 4 0.00
427 12 0.00
428 16 0.00
429 932 0.07
430 1328 0.10
431 2630 0.20
432 5310 0.41
433 518 0.04
434 9 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (432 bp):
GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
TGTTCAGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAAGAACAGAAGTTATAAAAG
AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
Found at i:17907927 original size:195 final size:195
Alignment explanation
Indices: 17907570--17909000 Score: 622
Period size: 216 Copynumber: 7.0 Consensus size: 195
17907560 TATAAATTTC
* * * *
17907570 ACAAGTTCAGAAGTTCATCCTAGAATGAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATT
1 ACAAGTTCAGAAGTTCATCCTAGAATGAAGAGAGAAACAATTCTCACGTAAAAAAGATTTTAATC
** *
17907635 AAAGGACCAAAACTTGTTTACAAAATGAAAAACTATATAGACCAAATTATGTGATTTCCCAAGCA
66 AAAGGACCAAAACTTGTTTACAAAATGAAAAACTATATAGACCAAACAATGCGATTTCCCAAGCA
* * * * *
17907700 TGGAATGCTCTGGAAATTGCTCGAAGGATTGGATCGTCTTGAATGCTTTAAGGAACCAAAGTTTG
131 TGGAATGCTCAGAAAATTGATCGAAGGATTGGATCGTCTTGAATACTTTAACGAACCAAAGTTTG
* * *
17907765 ACAAGTTCAGAGGTTCAT-CTAATAACT-AAGAGAGAAACAATTCTCACGTAAAAAAGATTTTAG
1 ACAAGTTCAGAAGTTCATCCT-AGAA-TGAAGAGAGAAACAATTCTCACGTAAAAAAGATTTTAA
* * * *
17907828 TGCAAA-GACCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAACAATGCGATTTCCCGA
64 T-CAAAGGACCAAAACTTGTTTACAAAATGAAAAACTATATAGACCAAACAATGCGATTTCCCAA
* * * *
17907892 GCATTGAATGTTCAGAAAATTGATCGAATGATTGGATCGTCTTGAATACTTTAACGAACCGAAGT
128 GCATGGAATGCTCAGAAAATTGATCGAAGGATTGGATCGTCTTGAATACTTTAACGAACCAAAGT
17907957 TATG
193 T-TG
* * ** * **
17907961 A-AAGAACTCGTAAAATTTTGACAAGTTCGAAAGTACGTCCAATAACCAAGAGAGAAATTATTCT
1 ACAAG---T--T--CA----G--AAGTTC---A-T-CCTAGAAT---GAAGAGAGAAACAATTCT
* * * * * * * * * * *
17908025 AACATAAATAAGTTTTTAATTCAAA-TACCAAAACATGATTACCAAATGATAAACTATTTTGACC
45 CACGTAAAAAAGATTTTAA-TCAAAGGACCAAAACTTGTTTACAAAATGAAAAACTATATAGACC
** * * * * ** * *
17908089 AAATGACGTGAGTT-CCAGAGCATGGAAT-TTTTGAAAAATT-ACTCGTATGATTGGATCGTCTT
109 AAACAATGCGATTTCCCA-AGCATGGAATGCTCAG-AAAATTGA-TCGAAGGATTGGATCGTCTT
17908151 GAATACTTTAACGAACCGAAGTTATGAAAAAACTCATAAAAGTTTG
171 GAATACTTTAACGAACC-AA---A-G----------T-----TT-G
** * ** * * *
17908197 ACAAGTTCAGAAGTTCATCC-ACGAACCAAAAGAGAAATGATTCTCACATAAATAAGTTTTTAAT
1 ACAAGTTCAGAAGTTCATCCTA-GAATGAAGAGAGAAACAATTCTCACGTAAAAAAGATTTTAA-
* * * * ** * **
17908261 TCAAAGG-CAAAAACTTGTTTACAAAATGACAAACTATGTGGACCAAATGATGTGATTTCCTGAG
64 TCAAAGGACCAAAACTTGTTTACAAAATGAAAAACTATATAGACCAAACAATGCGATTTCCCAAG
* * ** *
17908325 CATGGAATGTTCGGAAAATTTCTCGAAGGATTGGATCATCTTGAATACATTATGGAACAGATGTT
129 CATGGAATGCTCAGAAAATTGATCGAAGGATTGGATCGTCTTGAATAC-TT-T--AAC----G--
**
17908390 AAAAAGGAGCTCATAAAAGTTTG
184 ----A--A-C-C--AAAGTTT-G
* * * * * * * * *
17908413 ACAACTTCAGAAGTTCGTCCAAGAACCGAA-AGAGAAAAAAATCTCACGTCAATAAGTTTTTAAT
1 ACAAGTTCAGAAGTTCATCCTAGAA-TGAAGAGAGAAACAATTCTCACGTAAAAAAGATTTTAA-
* * * * * *
17908477 TCAAA-TACCAAAACTTGTTTACAAAAAGACAACCTATTTAGACC--A-AAT--GA--T--CGAG
64 TCAAAGGACCAAAACTTGTTTACAAAATGAAAAACTATATAGACCAAACAATGCGATTTCCCAAG
* * * * *
17908532 CATGGAATGTTCTGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAACGAATTGAAGTT
129 CATGGAATGCTCAGAAAATTGATCGAAGGATTGGATCGTCTTGAATACTTTAAC-----------
** *
17908597 GTAAAAGAACTCGTAAAAGTTTC
183 ------GAAC-C--AAAGTTT-G
* * * *
17908620 ACAAGTTCAGAAGTTCATCCTAGAACGAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAACT
1 ACAAGTTCAGAAGTTCATCCTAGAATGAAGAGAGAAACAATTCTCACGTAAAAAAGATTTTAA-T
** * *
17908685 C-AAGGACCAAAACTTGTTTACAAAATGAAAAACTATATAGACCAAATTATGTGATTTCCCGAGC
65 CAAAGGACCAAAACTTGTTTACAAAATGAAAAACTATATAGACCAAACAATGCGATTTCCCAAGC
* * * * * ***
17908749 ATGGAATGTTCAGGAAATTGTTCGAAAGATTGGATCATCTTGAATACTTTTTGGAACCAAAGTTT
130 ATGGAATGCTCAGAAAATTGATCGAAGGATTGGATCGTCTTGAATACTTTAACGAACCAAAGTTT
17908814 G
195 G
* * * ** *
17908815 ACAAGTTCAGAAGGTCATCCAATAACCAAGAGAGAAACAATTCTCACGTAAAAAAGATTTTAGTG
1 ACAAGTTCAGAAGTTCATCCTAGAATGAAGAGAGAAACAATTCTCACGTAAAAAAGATTTTAAT-
* * * * *
17908880 GAAA-GACCAAAACTTGTTTACAAAATGGAAAACTATTTTGACCAAACAATGCGATTTCCCGAGC
65 CAAAGGACCAAAACTTGTTTACAAAATGAAAAACTATATAGACCAAACAATGCGATTTCCCAAGC
** * * * * * *
17908944 ATTCAATGTTCAAAAAATTGATCAAATGATTGAATCGTCTTGAATACTTTAATGAAC
130 ATGGAATGCTCAGAAAATTGATCGAAGGATTGGATCGTCTTGAATACTTTAACGAAC
17909001 TGAAGTTATG
Statistics
Matches: 975, Mismatches: 155, Indels: 212
0.73 0.12 0.16
Matches are distributed among these distances:
194 3 0.00
195 318 0.33
196 14 0.01
198 2 0.00
199 4 0.00
200 1 0.00
202 1 0.00
203 3 0.00
205 1 0.00
206 9 0.01
207 147 0.15
208 6 0.01
209 2 0.00
210 3 0.00
211 3 0.00
212 4 0.00
213 4 0.00
214 3 0.00
215 6 0.01
216 392 0.40
217 12 0.01
218 1 0.00
219 3 0.00
220 5 0.01
221 2 0.00
224 7 0.01
226 1 0.00
230 2 0.00
231 1 0.00
232 3 0.00
233 1 0.00
234 2 0.00
235 3 0.00
236 3 0.00
237 3 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (195 bp):
ACAAGTTCAGAAGTTCATCCTAGAATGAAGAGAGAAACAATTCTCACGTAAAAAAGATTTTAATC
AAAGGACCAAAACTTGTTTACAAAATGAAAAACTATATAGACCAAACAATGCGATTTCCCAAGCA
TGGAATGCTCAGAAAATTGATCGAAGGATTGGATCGTCTTGAATACTTTAACGAACCAAAGTTTG
Found at i:17909394 original size:216 final size:216
Alignment explanation
Indices: 17908807--17922375 Score: 15414
Period size: 216 Copynumber: 63.1 Consensus size: 216
17908797 TTTTGGAACC
* * * * *
17908807 AAAGTTTGACAAGTTCAGAAGGTCATCCAATAACCAAGAGAGAAACAATTCTCACGTAAAAAAGA
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* ** * **
17908872 TTTTAGTGGAAAGACCAAAACTTGTTTACAAAATGGA-AAACTATTTTGACCAAACAATGCGATT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGATT
* ** * * * * * *
17908936 TCCCGAGCATTCAATGTTCAAAAAATTGATCAAATGATTGAATCGTCTTGAATACTTTAATGAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* * *
17909001 TGAAGTTATGAAAGAACTCGTG
195 CGAAGTTATAAAAGAACTCGTA
* * * * *
17909023 AAAGCTTGACAAGTTC-GAAAGTTCGTCCACGAACCAAGAGAGAAACAA-TCACACCTAAATAAA
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * *
17909086 TTTTTAATTCAAAGACCAAAACTTGATTACAAAATGACAGACTAGTTAGACCAAATGATGCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * * * *
17909151 TCTTAAACATGGAATATTCGAAAAATTGCTTGGAGGATTGGATCATCTTGAATACTTTATGGAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17909216 CGATGTTATAAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* ** * * * * *
17909238 ATAGTTTGACAAGTTTGGAAATTCATCTAAGAACCAAGAGAGAAATAAATCTCACGTAAATAA-T
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
*
17909302 TTTTGAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATT
66 TTTT-AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * *
17909367 TCCTGAGCATGGAATGCTCGGAAAATTGCTTGAACGATTGGATCGTCTTGAATACTTTAACGAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* * *
17909432 TGAAGTTATGAAAGAACTTGTA
195 CGAAGTTATAAAAGAACTCGTA
* * *
17909454 AAAGTTTGACAAGTTCAGAAGTTCGTCCACGAACCAAGAGAGAAACAATTGTCAAGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* *
17909519 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGGCAAACTATTTAGACAAAATGATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * **
17909584 CTTGAGCATGGATTGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGAAATA
131 CCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACC
* *
17909649 AAAGTTATAAAAGATCTCGTA
196 GAAGTTATAAAAGAACTCGTA
* * **
17909670 AAAGTTTGACAAGTTCAGAAGTTCGTCTAAGAACCTAGAG-GCAAATTATTCTCACGTAAATAAG
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAATAAG
* * * * *
17909734 TTTTCAATTCAAGGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAACTGATTCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * *
17909799 TTCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCATCTTGAAAATTTTAAGGAAT
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17909864 AGAAGTTATAAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * * * *
17909886 AAAGTTTGAGAAGGTC-GAAAGTTCGTCCAATAACCAGGAGAGAGACAATTCTCACGTAAATAA-
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* *
17909949 TTTTTAAATTCAAAGACCAAAACTTGTTTACAAAATAACAAACTATTTTGACCAAATGATGCGAT
65 TTTTT-AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * * * **
17910014 TT-CTCGAGCATGGAATGATCAAAAAATTGCTCAAATGATTAGATCATCTTGAATACTTTAAATA
129 TTCCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGA
* *
17910078 ACTGAAGTTATGAAAGAACTCGT-
193 ACCGAAGTTATAAAAGAACTCGTA
* *
17910101 AAAGCTTTGACAAGATC-GAAAGTTCGTCCACA-AACCAAGAGAGAAACAATTCTCACGTAATTA
1 AAAG-TTTGACAAGTTCAG-AAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
17910164 AGTTTTTAATTCAAGGACCAAAACTT-TTTCACAAAATGGA-AAACTATTTTGACCAAATGATGC
63 AGTTTTTAATTCAAAGACCAAAACTTGTTT-ACAAAAT-GACAAACTATTTAGACCAAATGATGC
* * * *
17910227 TATTTCC-CAGGCATGGAATGTTCAAAAAATTGCTCGAATGATTGGATCGTCTTGAATACTTTAA
126 GATTTCCTGA-GCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAA
* * *
17910291 CGAACCGAAGTTATGAAAGAACTCATA
190 GGAACCGAAGTTATAAAAGAACTCGTA
* * * * ** *
17910318 AAAGATTGACAAATTCTGAAGGTCAACCACGAACCAAGAGAGAAACAATTCTCAAC-TAAATAAG
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC-ACGTAAATAAG
* * * ** * *
17910382 TTTTTAATTCAATGACCAAAATTTGTTTACAAAATGGCAAACTATTTAGATAAAATGTTGCAATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * ** * *
17910447 TCTTGATCATTGAATGCTT-G-AAAATTTTTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
130 TCCTGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
* *
17910510 ACAAAGTTATAAAAGAACTCGTA
194 CCGAAGTTATAAAAGAACTCGTA
* ** * * *
17910533 AAAGTTTGACAAGTTC-GAAAGTTCGTCTAAGAACCAAGAGTCAAATAATTCTCATGTAAATATG
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
17910597 TTTTTAATTCAAGGACCAAAACTTGTTTGCGAAATGACAAACTATTTAGACCAACTGATGCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * *
17910662 ATCC-GAGCATGGAATGTTCCAAAAATTGCTCGAAGGATTGGATCATCTTGAATACATTAAGGAG
130 -TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
* * *
17910726 CCAAAGTTATAAAAGAAGTCGCA
194 CCGAAGTTATAAAAGAACTCGTA
* * *
17910749 AAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAACT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *** * * * *
17910814 TTTTAATTTAATGATGGAAACCTGTTTA-AAAATAACAAACTATTTATACCAAATGATGTGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * *
17910878 CCCGAGCATGGAATGTTC-AGAAAATTGCTCGAAGGATTGCATCGTCTTGAATACTTTAATGAAC
131 CCTGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17910942 CAAAGTTATAAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * *
17910964 AAAGTTTGACAAGTTC-GGAGCTTCGTCAAATAACCAAGAGAGAAACAATTCTCACGTAAATAAG
1 AAAGTTTGACAAGTTCAGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * *
17911028 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAACTAATGTGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-T
* * *
17911093 TTCC-GAGCATGGAATGTT-AAGAAAATTGCTCGAAGGATTGAATCATCTTGAATACTTTAAGGA
129 TTCCTGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGA
*
17911156 ACAGAAGTTATAAAAGAACTCGTA
193 ACCGAAGTTATAAAAGAACTCGTA
* * * * * *
17911180 AAAGATTGACAAGGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAATTAATT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * *
17911245 TTTTAATTCAAAGACCAAAACTTGTTT-TAAGATGGCAAACTATTTATACCAAATGATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * *
17911309 TCTGAGCATTGAATGTTCAAAAAATTGCTCAAAGGATTGCATCCTCTTGAATACTTTAAGGAACC
131 CCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACC
17911374 GAAGTTATAAAAGAACTCGTA
196 GAAGTTATAAAAGAACTCGTA
* * * ** * * * *
17911395 AATGTTTGACAAGTT-TGAATCTTCGTAGAATAACTAGGAGAGAAACAATTCTCACGTAAATAAA
1 AAAGTTTGACAAGTTCAGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
17911459 TTTTTAATTCAAAGACCAAAACTTTTTTACAAAATGAAAAACTATTTTGAGCAAATGATGCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * *
17911524 TCAC-GAGCATGGAATGTTCGGAAAATTGCTCGAATGATTGCAAT-GTCTTGGATACTTTAACGA
130 TC-CTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTG-GATCGTCTTGAATACTTTAAGGA
** *
17911587 ACTAAAGTTATGAAAGAACTCGTA
193 ACCGAAGTTATAAAAGAACTCGTA
* * * * * * *
17911611 AAAGTTTGACATGTTCGGAAGTTCGTTCATGAACCAAGAGAGGAACAATTCTTATGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * **
17911676 TTTTAATTCAAACACGAAAACTTTTTTACAAAATGACAAACTATTTAGAAGAAATGATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* ** * * * *
17911741 CTTGAGCATAAAATGTTCGAAAAATTGCTCGAAGTATTGGATCGTCTTGAAAACTTTATGGAATC
131 CCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACC
* *
17911806 GATGTTATAAAAGAATTCGTA
196 GAAGTTATAAAAGAACTCGTA
* * ** * * * *
17911827 AAATTTTGACAAGTTC-GAAAGTTTGTCCAAGAGTCAAGAGAGAAAAAAATCTCACATCAATAAG
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * *
17911891 TTTTTAATTTAAAGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGGCC-AA--AT--GA--
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * ** * *
17911949 T-C-GAGCACGGAATGTTCGGAAAATTTCTCGAAGGAACGGATCGTCTTGAATACATTAACGAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
**
17912012 TAAAGTTATAAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * *
17912034 AAAGTTTGACAAGTTCAAAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
17912099 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATTACAATCTATTTTGACCAAATGATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * ** * * *
17912164 -CTCGAGCATAGAATGTACGAAAAATTGCTCGAATAATTGGATCGTCTTGAAAACTTTAACGAAT
131 CCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17912228 CGAAGTTATGAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * * * *
17912250 AAATTTTGACAAGATCGGAAGTTCGTCCACA-AATCAAGAGAGAAACAATTCTCACATAAATAAG
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
17912314 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGGCAGACTATTTTGACCAAATGATGCTATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * *
17912379 TCCCGAGCATGGAATGTTC-AGAAAATTGCTCGAATGATTGGATCATCTTGAATACTTTAACGAA
130 TCCTGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
* *
17912443 CTGAAGTTATGAAAGAACTCGTA
194 CCGAAGTTATAAAAGAACTCGTA
* * * *
17912466 AAAGTTTGACAAGTTCAGATGTTCATCCATGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * * * * *
17912531 CTTTAATTCAAAGACCAAAACTAGGTTACAAAATGGCACATTATTCAGACAAAATGATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
** * * *
17912596 ATTGAGCATGGAATGTTCGAAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTTAAAGAACC
131 CCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACC
* * *
17912661 TACGTTATAAAAGAACTCTTA
196 GAAGTTATAAAAGAACTCGTA
* * * * * *
17912682 AAAGTTTGACAAGTTCAAAACTTCGTCTAAGAACCAAGAGACAAATAATTCTCACGTAAATAA-A
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
*
17912746 TTTTAATT-AAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAACTGATGCGATT
66 TTTTAATTCAAA-GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * *
17912810 T-TTCGAGCATGGAATGTTTGGAAAATTACTCGAAGGATTGGATCATCTTGAATACTTTAAGGAA
130 TCCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
* *
17912874 CTGAAGTTATAAAAGAACTTGTA
194 CCGAAGTTATAAAAGAACTCGTA
* * *
17912897 AAAGTTTGACAAGGTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAATT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
17912961 TTTTAATTTAAAGACCAAAACTTGTTTA-AAAATGATAAACTATTTATACCAAATGATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * ** ** *
17913025 CCCGAGCATGGAATGTT-TAGAAAATTGCTCGAATGATTTCATAATTTTGAATACTTTAAGGAAC
131 CCTGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17913089 CAAAGTTATAAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * *
17913111 AAAGTTTGACAAGTTC-GGAGCTTCGTCCAATAACCAAGAGAGAAACAATTCGCACGTAAATAAG
1 AAAGTTTGACAAGTTCAGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * * *
17913175 TTTTTAACTCAAAGACCAAAAGTTGTTCACAAAGTGACAAACTATTTTGACCAAATGACGTGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * *
17913240 TCCCGAGCATGGAATGTTCGGAAAATTGCTCGAATGATTGGATCGTCTTGAATACTTTAACGAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17913305 C-AATGTTATGAAAGAACTCGTA
195 CGAA-GTTATAAAAGAACTCGTA
* * * * * * *
17913327 AAAGTTTAAGAAGATC-GAAAGTTCATCCACA-AACCAAGAGAGGAACAATTCTCATGTAAAAAA
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
17913390 GTTTTTAATTCAAAGACCAAGACTTGCTTACAAAATGGCAAACTATTTTGACCAAATGATGCGAT
64 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * * *
17913455 TTCCCGAGCATGGAATGTTTGGAAAATCGCTTGAATGATTGGATCGTCTTGAATACTTT-AGCGA
129 TTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAG-GA
* * *
17913519 ATCAAAGTTATGAAAGAACTCGTA
193 ACCGAAGTTATAAAAGAACTCGTA
* * * *
17913543 AAAGTTTGACAAGTTCAGAAGTTCGTCCACA-AACCAAGAGAGAAACAATGCTAAAGTGAATAAG
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
17913607 TTTTTAATTTAAAGACTAAAACTTGTTTACAAAATGGA-AAATTATTTAGACCAAATAATGCGAT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGAT
* * * * * * * *
17913671 TTCTTAAGCATGGAATGTTCGGAAAATTGCTTGAAGGAATGGATCATCCTGAATACTTTATGGAA
129 TTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
*
17913736 CCGATGTTATAAAAGAACTCGTA
194 CCGAAGTTATAAAAGAACTCGTA
* * * * * *
17913759 ATAGTTTGACAAGTTTAGAAGTTCATCTAAGAACCCAA-AGACAAATAATTCTCACGTAAATAAG
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAG
* * *
17913823 ATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAATTGATACGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * **
17913888 TCTTGAGCATTGAATGTTCGGAAAATTGCTCAAAGGATTGGATAATCTTGAATACTTTAAGGAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17913953 TGAAGTTATAAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * * * * * *
17913975 AAAGATTAATAA-TGTCGGGAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAGGTAATTAA-
1 AAAGTTTGACAAGT-TCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* *
17914038 -TTTT--TT--------AAAACTTGTTTACAAAATGACAAACTATTTAGATCAAATGATGCAATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * * *
17914092 TCCCGAGTATGGAATGTTCGAAAAATTTCTCGAATGATTGGATCATCTTGAATGCTTTAACGAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17914157 AGAAGTTATAAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
** * * *
17914179 GGAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGGGAGAAACAAATCTCACGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * * *
17914244 TTCTAATTCAAGGACAAAAACATT-TTTACAAAATGAAAAACTATTTAGACCAAATTATGCAATT
66 TTTTAATTCAAAGACCAAAAC-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * * *
17914308 TCCCGAGCAAGGAATGTTCGGAAAATTTCTTGAAGGATTGGATCGTCTTAAACACTTTAAGGAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* *
17914373 CGAAGTTATAAATGAACTCATA
195 CGAAGTTATAAAAGAACTCGTA
* * * * * * * *
17914395 AAAGTTTGACTAATTTGA-AAGTTAGTCCCATAACCAGGAGAGAAACAATTGTCACGAAAATAAG
1 AAAGTTTGAC-AAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * ** * *
17914459 ATGTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAATTATTTTCATCAAGTGATGCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * **
17914524 T-CTCGAGAATGGAATGTTCGAAAAATTACTCGAATGATTTGATCGTCTTGAATACTTTAACAAA
130 TCCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
*
17914588 CCGAAGTTATGAAAGAACTCGTA
194 CCGAAGTTATAAAAGAACTCGTA
* ** ** * *
17914611 AAATTTTGACAAGTTTGGAAGTTCGTCCACA-AATGAAGAGAGAAAAAATTCTCACATAAATAAG
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * **
17914675 TTTTTAATTGAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACTAAATGATTTGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* ** * *
17914740 TCTTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTCAATAGTCTTGAATACTTTATGGAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* *
17914805 CGATGTTATAAAAGAACACGTA
195 CGAAGTTATAAAAGAACTCGTA
* * * *
17914827 ATAA-TTTGAGAAGTTCAGAAGTTTGTCCAAGAACCAAGAGAGAAATAATTCTCTCGTAAATAA-
1 A-AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
*
17914890 TTCTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAAT
65 TT-TTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * *
17914955 TTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATGCTATAAGGAA
129 TTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
*
17915020 CCAAAGTTATAAAAGAACTCGTA
194 CCGAAGTTATAAAAGAACTCGTA
* * * * *
17915043 AAGGTTTAACAAGTTTAGACGTTCGTCCAAGAAGCTAA-AGAGAAACAATT-TCCACGTAAATAA
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCT-CACGTAAATAA
* * * * *
17915106 TTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAAGAAAAACTACTTACACCAAATGATGCGAT
64 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * ** * *
17915171 TTCCCGAGCATGAAATGTTCTG-AAAATTGCTTAAAGGAATGGATCGTCTTGAATACTTTAATGA
129 TTCCTGAGCATGGAATGTTC-GAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGA
* *
17915235 ACCGAAGTCATGAAAGAACTCGTA
193 ACCGAAGTTATAAAAGAACTCGTA
* * * *
17915259 AAAGTTTGACATGCTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
17915324 TTTTAATTCAAGGACCAAAACTTGTTTACAAAATAAAAAACTATTTAAACCAATTGATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * *
17915389 CCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGCATCATCTTGAATACTTTAAGGAATC
131 CCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACC
* ** *
17915454 GAAGTTACAGCAGAACTCATA
196 GAAGTTATAAAAGAACTCGTA
* * * *
17915475 AAAGTTTGACAAGGTCAGAAGTTCATCCAAGTACCAAGAGAGAAACAATTCTCACGTAAAATAAT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAG
* *
17915540 TTTTTAATTCAAAGACCAAAACTTGTTTA-AAGATGACAAACTATTTAGACCAAATGATGCAATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * *
17915604 TCCCGAGCATGGAATGTTC-AGATAATTGCTCGAAGGATTGCATCGTCTTGAATACTTTATGGAA
130 TCCTGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
*
17915668 TCGAAGTTATAAAAGAACTCG-A
194 CCGAAGTTATAAAAGAACTCGTA
* * *
17915690 AAAGGTTTGACAAGTTC-GAAGCTTCGTCTAATAACCAAGAGAGAAACAATTTTCACGTAAATAA
1 AAA-GTTTGACAAGTTCAGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * ** * * * *
17915754 GTTTTTCATTCAAAGATCGAAACTTCCTTACAAAAAGGA-TAACTATTTTGAGCAAATGATGCGA
64 GTTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * ** * *
17915818 TTTCCCGAGCATGGAATGTTCG-GAAATTGCTGGAATGATTATATCGTCTTGGATACTTTAATGA
128 TTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGA
* *
17915882 ACTGAAGTTATAAAAGAACTCATA
193 ACCGAAGTTATAAAAGAACTCGTA
* * *
17915906 AAAGTCTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * *
17915971 TTTAAATTCAAAGACCAAAACTTTTTTACAAAATGACAAACTATTTAGACTAAATGATGCAATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * *
17916036 CCCGAGCATGGAATGTTCGAAAAATTTCTCGAATGATTGGATCATCTTGAATACTTTAACGAACA
131 CCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACC
* *
17916101 GAAGTTATCAAAGAACTTGTA
196 GAAGTTATAAAAGAACTCGTA
* * * * *
17916122 AGAGTTTTACAAGTTCAGAAGTTCATCCAAGAACCAAGGGAGAAACAATTCTCATGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * *
17916187 TTCTAATTCAAGGACAAAAACTTGTTTACAAAATGA-ACAACTATTTAGACCAAATGATGCAATT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA-AACTATTTAGACCAAATGATGCGATT
* * * * * * *
17916251 TCCCGAGCAGGGAATGTTC-AGAAAATTTCTTGAAGGATTAGATCGTCTTAAACACTTTAAGGAA
130 TCCTGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
* *
17916315 CCAAAGTTATAAATGAACTCGTA
194 CCGAAGTTATAAAAGAACTCGTA
* * * * *
17916338 AAAGTTTGACAAGTTC-GAAAGTTCGTCCTATAACCAGGAGAGAAACAATTGTCATGTAAATAAG
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * ** * *
17916402 ATGTTAATTCAAAGACCAAAACTTGTTTACAAAATGA-AAACTATTTTCATCAAATGATGTGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-T
* * * * **
17916466 TTCC-GAGAATGAAATGTTCGAAAAATTGCTCAAATGATTGGATCGTCTTGAATACTTTAACAAA
129 TTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
** *
17916530 CCGAAGTTACGAAAGAGCTCGTA
194 CCGAAGTTATAAAAGAACTCGTA
* * ** * * * *
17916553 AAAGTTTGACAAGTTCGGAAGTTCGTCCATGAATGAATAGA-AAAAAATCCTAACGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* *
17916617 TTTTAATTGAAAGACCAAAACTTGTTTACAAAATGA-AAAGCTATTTAGACCAAATGATTCGATT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA-CTATTTAGACCAAATGATGCGATT
* * * * * *
17916681 TCTTGAGCATGGAATGTTCGAAAAATTGCTCGACGGATTCGATAGTCTTGAATACTTTATGTAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17916746 CGATGTTATAAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * *
17916768 ATAA-TTTGACAAGTTC-GGAGCTTCGTCCAATAACCAAGAGAGAAACAATTTTCACGTAAATAA
1 A-AAGTTTGACAAGTTCAGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
17916831 GTTTTTAATTCAAAGACCGAAACTTGTTT-CGAAAAAGGA-AATCTATTTTGAGCAAATGATGCG
64 GTTTTTAATTCAAAGACCAAAACTTGTTTAC--AAAATGACAAACTATTTAGACCAAATGATGCG
* * * * *
17916894 ATTTCCCGAGCATGGAATGTTCGAAAAATTGCTGGAATGATTGGATCGTCTTGGATACTTTAACG
127 ATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGG
* ** *
17916959 AACTGAAGTTATAAAAGATGTCATA
192 AACCGAAGTTATAAAAGAACTCGTA
* * * * *
17916984 AAAGTTTGATAAGTTTAGAAGTTCATCCAAGTACCAAGAGAGAAACAATTCTGACGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* ** * * * *
17917049 TTTTAATTCAAGGAAAAAAAACTTGTTTAAAAAATGA-AAATTAGTTAGACCAAATGATGCAATT
66 TTTTAATTCAAAG-ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * **
17917113 TCCCGAGCAAGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCATCTTAAATACTTTAAGGAGT
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17917178 CGAAGTTATAAATGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
** * * * *
17917200 AAAGTTTGACAA-TTTTGAAAGTTTGTCCTATAACCAGGAGAGAAACAATTCTCACGTAAATAAG
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * **
17917264 ATGTTAATTCAAAGACCCAAACTTGTATACAAAATGAAAAACTATTTTCACCAAATGATGCGA-T
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * *
17917328 TCCTCGAGCATGGAATGTTTGGAAAATTGCTCGAATGATTGGATCGTCTTAAATA-TTGTAACGA
130 TCCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTT-TAAGGA
* *
17917392 ACTGGAA-TTATGAAAGAACTCGTA
193 AC-CGAAGTTATAAAAGAACTCGTA
* * * * *
17917416 AAAGTTTGACAAGTTCGGAAGTTCGTCCACGAACGAAGAGAGAGAA-AATTCTAATGTAAATAAG
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGA-AACAATTCTCACGTAAATAAG
* * * * *
17917480 GTTTTAATTGAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATTCAATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * *
17917545 TCTTGAGAATGGAATGTTCGAAAAATTGCTCGAAGGATTCGTTAGTCTTGAATACTTTATGGAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17917610 C-AATGTTATTAAAGAACTCGTA
195 CGAA-GTTATAAAAGAACTCGTA
* * * *
17917632 ATAGTTTGACAAGTTCAGACGTTCGTCCAAGAACCTAGAGAGAAACAATTCTCACGTAAATAATT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * *
17917697 TTTTAAATCAAAGACCAAAACTTGTTTACAAAAAGACAAACTACTTAGACCAAACGATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * **
17917762 CCCGAGCATGGAATGTTCTG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAATTAAC
131 CCTGAGCATGGAATGTTC-GAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17917826 CGAAGTCATAAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * * *
17917848 AAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGA-AGAAATAATTCTCACATAAATGAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
17917912 TTTTAATTC-AAGTACCAAAACTTGTTTACAAAATGAGAAATTATTTAGACCAAATGATGTGATT
66 TTTTAATTCAAAG-ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * *
17917976 T-CTCGTGCATGGAATGTTCAAAAAATTGTTCGAAGGATTGGAT-GATCTTGAATACTTTAAGGA
130 TCCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCG-TCTTGAATACTTTAAGGA
* * *
17918039 ACCAAAGTTATAAATGAACTCATA
193 ACCGAAGTTATAAAAGAACTCGTA
* * * * ** *
17918063 AAATTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAGCAATTCTCTTGTAAATAATT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
*
17918128 TTTTAATTCAAATACCAAAACTT-TTTA-AGAAATG-CAAACTATTTAGACCAAATGATGCGATT
66 TTTTAATTCAAAGACCAAAACTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATT
** *
17918190 T-CTCGAGCATGGAATGTTTAAAAAATTGCTCGAAGGATTGGATCGTCTTGAATATTTTAAGGAA
130 TCCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
* * *
17918254 CTGCAGTTATAAAAGAACTCATA
194 CCGAAGTTATAAAAGAACTCGTA
* * * *
17918277 AAAGTTTGACAAGTTC-GAAAGTTCGTCCTATAACCATGAGAGAAACAATTCTCATGTAAATAAG
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * *
17918341 ATTTTAATTCAAAGATCAAAACTTGTTTACAAAATGGA-AAACTATTTTGACCAAATGATGCGAT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGAT
* * * *
17918405 TT-CTCGAGCGTGGAATGCTTAG-AAAATTGCTCGAA-TATTTGGATCGTCTTGAATACTTTAAC
129 TTCCT-GAGCATGGAATG-TTCGAAAAATTGCTCGAAGGA-TTGGATCGTCTTGAATACTTTAAG
*
17918467 GAATCGAAGTTA-AGAAAGAACTCGTA
191 GAACCGAAGTTATA-AAAGAACTCGTA
*
17918493 AAA-TTTGACAAGTTCGGAAGTTCGTCCACA-AACCAAGAGAG----AA-----AC-T--ATAAG
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
17918544 TTTTTAATTCAAATACAAAAACTTGTTTACAAAATGGA-AAACTATTTTGACCAAATGATGCGGT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGAT
* * * * ** *
17918608 TTCCCGAGCTTGGAATGTTCGAAAAATTTCTCGAATGATTGGATTATCTTGAATACTTTAACGAA
129 TTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
* *
17918673 TCGAAGTTATGAAAGAACTCGTA
194 CCGAAGTTATAAAAGAACTCGTA
* * * * ** * *
17918696 AAAGTTCT-ACAAATTCGGAAGTTCATCCACGAATGAAGAGAGAAAAAATTCTCGCGTAAATAAG
1 AAAGTT-TGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
17918760 TTTTTCATTGAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAAACCAAATGATTCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * * * *
17918825 TCTTGAGCATAGAGTGTTCCAAAAATTGCTCGAAGGATTCGATAGTCTTGAATACTTTATGAAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17918890 C-AATGTTATAAATGAACTCGTA
195 CGAA-GTTATAAAAGAACTCGTA
* * * * * *
17918912 ATAA-TTTGATAAGTTTAGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTTTCATGTAAATAAT
1 A-AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* *
17918976 TTTTTAATTCAAAGACTAAAACTTGTTTACAAAATGACAAACTATTCAGACCAAATGATGCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * *
17919041 TCTTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTATATGGAGC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* *
17919106 TGAAGTTATAATAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* ** * **
17919128 AAAG-TT-ATCAAGTTCAGACGTTCGTCCAAG-ACC-CTAGAGAATCAATTCTCACGTAAATATT
1 AAAGTTTGA-CAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* *
17919189 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAAGGACAAACTACTTAGACCAAATGATGCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
** * * * * *
17919254 TCCCAAGAATGGAATGTTCTG-AAAATTGCTCGAAGGAATGAATCTTCTTGAATACTTTAATGAA
130 TCCTGAGCATGGAATGTTC-GAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
* *
17919318 CCAAAGTCATAAAAGAACTCGTA
194 CCGAAGTTATAAAAGAACTCGTA
* * *
17919341 AAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
17919406 TTTTAATTCAAGGACCAAAACTTGTTTACAAAATGA-AATACTATTTAGACCAATTGACGCGATT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA-ACTATTTAGACCAAATGATGCGATT
* * **
17919470 TCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGATTGGATCAACTTGAATACTTTAAGGAAC
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17919535 CGAAGTTATAAAAGAACTCATA
195 CGAAGTTATAAAAGAACTCGTA
* * * * *
17919557 AAAGCTTGACAAGGTCAGAAGTTCATCTAAGAACCAAGAGAGAAAAAATTCTCA-GATAAAATAA
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG-T-AAATAA
* * * * *
17919621 TTTTTTAATTCAAAGACCAAAACTCGTTTA-AAGATGACAAACTATTTAGACCAAAATAATGCAA
64 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC-AAATGATGCGA
* * * * * *
17919685 TTTCCCGAGCATGGAATTTTCAAAAAATTGCTCGAAGAATTGCATCGTCTTGAATACTTTATGGA
128 TTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGA
* *
17919750 ACCAAAGTTATAAAAGAACTCGAA
193 ACCGAAGTTATAAAAGAACTCGTA
* * * * *
17919774 AAAGTTTGATAAGTTCTG-AGCTTCGTCCAATAACCAAGAGAGAAACAATTTTCATGTAAATAAG
1 AAAGTTTGACAAGTTCAGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
17919838 TCTTTAATTCAAAGACCGAAACTTGTTTACAAAAAGGA-AAACTATTTTGAGCAAATGATGCGAT
65 TTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * *
17919902 TTCCTGAGCATGGAATGTTCGAAAAATTGCTGGAATGATTGGATCGTCTTGGATACTTTAACGAA
129 TTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
*
17919967 CTGAAGTTATAAAAGAACTCGTA
194 CCGAAGTTATAAAAGAACTCGTA
* * * *
17919990 AAAGTTTGACAAGTTCAGAAGTTCATCCAAGTACCACGAGAGAAACAATTCTCACGTAAATAACT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* ** * * * *
17920055 TTTTAATTCAAGGAAAAAAACTTGTTTAAAAAATGAAAAACTATTTAGACAAAATGATGCAATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * *
17920120 CCCGAGCAAGGAATGTTCGAAAAATTGCTCGAAAGATTGGATCGTCTTAAATACTTTAA-GAAGC
131 CCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA-C
*
17920184 CGAAGTTATAAATA-AACTCATA
195 CGAAGTTATAAA-AGAACTCGTA
* * * * * *
17920206 AAAGTTTGACAAGTT-TGAAAGTTTGTCCTATAACCAGGAGAGAAACAATTCTCATGTAAATAAG
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * ** *
17920270 ATGTTAATTCAAAGACCCAAACTTGTTTACAAAATGAAAAACTATTTTCACCAAATGATGCAATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * ** *
17920335 TCTTGAGCATGGAATGTTCGTAAAATTTCTCGAATGATTGGATCGTCTTGAATACTGTAACAAAT
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17920400 CGAAGTTATGAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * * * * *
17920422 AAAGTTTGACAAGTTC-GAAAGGTCGTCCATGAACGAAGAGAGAAAAAATTTTCACATAAATAAG
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * **
17920486 TTTTTAATTGAAAGACCAAAACTTGTTCACAAAATGAAAAACCATTTTCACCAAATGATGCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * *
17920551 T-CTCGAGCATGGAATGTTC-AGAAAATTGCTCGAATGATTGGATCGTCTTGAATATTTTAAAGA
130 TCCT-GAGCATGGAATGTTCGA-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGA
* *
17920614 ACCGAAGTTATGAAAGAACTTGTA
193 ACCGAAGTTATAAAAGAACTCGTA
** * * * * *
17920638 AAAGTTTGACAAGTTTGGAAGTTCATCCACGAACAAAGAGAGAAAAAATTCTCACGTGAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
17920703 TTTTAATTGAAAGACCAAAACTTGTTTACAAAATTACAAACTATTTAGACCAAATGATTCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * * *
17920768 CTTGAGCATGGGATGTTCAAAAAATTGCTCGAAGTATTGGACCGTCTTGAATACTTTATGGAATC
131 CCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACC
* *
17920833 GATGTTATAAAAGAACTCTTA
196 GAAGTTATAAAAGAACTCGTA
** * * * *
17920854 ATGGTTTGACAGGTTC-GAAAGTTCATCCAAGAACCAAGTGAGAAACAATTCTCACGTAAATAAT
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
17920918 TTTTTAATTCAAAGACCAAAACTTGTTTGCATAATG-CAAACTATTTAGACCAAGTGAAGCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * *
17920982 TCGC-GAGCATGGAATGTTCGAAAAATTGTTCGAAGGAATGGATCGTCTTGAATACTATAAGGAA
130 TC-CTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
*
17921046 CCGAAGTTATAAAAGAACTCCTA
194 CCGAAGTTATAAAAGAACTCGTA
* * * * ** *
17921069 CAAGTTTGATAAGTTCAGACGTTCATCCAAGAATGAAGAGAGAAACAATTCTCACGTAAATAATT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
17921134 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAATTATTTAGAACAAATAATGCAATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
*
17921199 -CTCGAGCATGGAATGTTC-AGAAAATTGTTCGAAGGA-TGGAT-GATCTTGAATACTTTAAGGA
131 CCT-GAGCATGGAATGTTCGA-AAAATTGCTCGAAGGATTGGATCG-TCTTGAATACTTTAAGGA
* *
17921260 ACTGATGTTATAAAAGAACTCAG-A
193 ACCGAAGTTATAAAAGAACTC-GTA
* * * * **
17921284 AAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAGCAAGTCTCTTGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* *** * **
17921349 TCTTAACAAAAATACCAAAACTT-TTTATGAAATG-CAAACTATTTAGACCAAATGATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * **
17921412 -CTCGAGCATGGAGTGTTCGAAAAATTGCTCGAAGGATTGGATTGTCTTGAATACTTTAATAAAC
131 CCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* *
17921476 TGAAGTTATAAAAGAACCCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * * *
17921498 AAAGTTTGCCAAGTTCAGAAATTCATCCAAGAACCAA-ATGAGAAACAATTATCACGTAAATAAG
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAG
* * * *
17921562 TTTTTAATTCAAGGACCAAAACTTGTTTACAAAATAAAAAATTATTTAGACCAAATGATGCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* *
17921627 T-CTCGAGCATGGAATGTTCGAAAAATTGTTCAAAGGATTGGAT-GATCTTGAATACTTTAAGGA
130 TCCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCG-TCTTGAATACTTTAAGGA
* *
17921690 ACTGAAGTTATAAAAGAACTCATA
193 ACCGAAGTTATAAAAGAACTCGTA
* * * ** *
17921714 AAAGTTTGAAAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAGCAGCTCTCATGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
*** * * * *
17921779 TTTTAACAAAAATACCAAAACTT-TTTACTAAATG-TAAACTATTTAGACCGAATGATGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * *
17921842 -CTCGAGCATGGAGTGTTCAAAAAATTTCTCGAAGGATTGGATTGTCTTGAATACTTTATGGAAC
131 CCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
*
17921906 CAAAGTTATAAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * * *
17921928 AAAGTTTGACAAGTTC-GAAAGTTCATCCTATAACCAAGAGAGAAACAATTCTCTCGTAAATAAG
1 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
17921992 ATTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGAAAAACTATTTTGACCAAATGATGCGATT
65 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * * * * *
17922057 TCCCGAGCATGGAATGTTCGAAAAATTGATCAAATGTTTGGATCATCTTGAATATTTTAATGAAT
130 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
**
17922122 CGAAGTTAGGAAAGAACTCGTA
195 CGAAGTTATAAAAGAACTCGTA
* * * *
17922144 AAAGTTTGACAAGTTCAGAAGTTCATCCACGAACCAAGAGAGAAACGATTCTCATGTAAATAAGT
1 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * *
17922209 TTTTAATTCAAATACCAAAACTTGTTTACAAAATGAAAAACTATTTTGACCAAATGACGCGATTT
66 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
** * * * * * **
17922274 CCCAAGTATGGAATGTTCGGAAAATTGCTTGAATGATTGGATCATCTTGAATACTTTAACAAACC
131 CCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACC
*
17922339 GAAGTTATGAAAGAACTCGTA
196 GAAGTTATAAAAGAACTCGTA
17922360 AAAGTTTGACAAGTTC
1 AAAGTTTGACAAGTTC
17922376 GAAAAATTTC
Statistics
Matches: 11319, Mismatches: 1778, Indels: 512
0.83 0.13 0.04
Matches are distributed among these distances:
202 3 0.00
203 138 0.01
204 200 0.02
205 3 0.00
206 4 0.00
207 164 0.01
208 6 0.00
209 1 0.00
210 2 0.00
211 4 0.00
212 4 0.00
213 223 0.02
214 763 0.07
215 2058 0.18
216 7392 0.65
217 348 0.03
218 6 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (216 bp):
AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
CCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACC
GAAGTTATAAAAGAACTCGTA
Found at i:17922430 original size:84 final size:84
Alignment explanation
Indices: 17922288--17922460 Score: 220
Period size: 84 Copynumber: 2.1 Consensus size: 84
17922278 AGTATGGAAT
* * * * *
17922288 GTTCGGAAAATTGCTTGAATGATTGGATCATCTTGAATACTTTAACAAACCGAAGTTATGAAAGA
1 GTTCGAAAAATTGCTCGAAGGATTGGATCATCTTGAATAATTTAACAAACCGAAGTTATAAAAGA
17922353 ACTCGTAAAAGTTTGACAA
66 ACTCGTAAAAGTTTGACAA
* * *** * *
17922372 GTTCGAAAAATTTCTCGAAGGATTGGATCGTCTTGAATAATTTATGGAACTGATGTTATAAAAGA
1 GTTCGAAAAATTGCTCGAAGGATTGGATCATCTTGAATAATTTAACAAACCGAAGTTATAAAAGA
* *
17922437 ACTCGTAATAGTTTGAGAA
66 ACTCGTAAAAGTTTGACAA
17922456 GTTCG
1 GTTCG
17922461 GAAGTTCGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
84 75 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32
Consensus pattern (84 bp):
GTTCGAAAAATTGCTCGAAGGATTGGATCATCTTGAATAATTTAACAAACCGAAGTTATAAAAGA
ACTCGTAAAAGTTTGACAA
Found at i:17922771 original size:214 final size:216
Alignment explanation
Indices: 17922372--17923222 Score: 1020
Period size: 214 Copynumber: 4.0 Consensus size: 216
17922362 AGTTTGACAA
* * * * * * *
17922372 GTTCGAAAAATTTCTCGAAGGATTGGATCGTCTTGAATAATTTATGGAACTGATGTTATAAAAGA
1 GTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* * *
17922437 ACTCGTAATAGTTTGAGAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTA
66 ACTCGTAAAAGTTTGAGAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA
*
17922502 AATAATTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
131 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
*
17922567 GTGATTTCCCGAGCATGGAAT
196 GCGATTTCCCGAGCATGGAAT
* * **
17922588 GTTCAAAAAATTGCTC-AA-AAATGGATCATCTTGAATACTTTAAGGAATTGAAGTTATAAAAGA
1 GTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* * * * * * *
17922651 AATCGTAAAAGTTTGA-AGGTTTC-AAACGTTCGTCCACGAATCTAGAGAGAAACAATTAC-CAC
66 ACTCGTAAAAGTTTGAGAAG-TTCGGAA-GTTCATCCAAGAACCAAGAGAGAAACAATT-CTCAC
* * * *
17922713 GTAACTAATTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAAA
128 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAAT
*
17922778 GATGCGATTTCCCGAGCATGAAAT
193 GATGCGATTTCCCGAGCATGGAAT
* * * * *
17922802 -TT-GAAAAATTCCTCGAAGGAATGAATCGTCTTGAATACTTTAACGAACCAAAGTTATAAAAGA
1 GTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* * * *
17922865 ACTCATAAAAGTTTGATAAGTT---AAGTTCATCCGAGAACCAAGAGAGAAACAATTCTTACGTA
66 ACTCGTAAAAGTTTGAGAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * * ** * *
17922927 AATAAGTTGTTATTTCAAGGACCAAATTTTTTTTACAAAATGATAAACTATTTAGACCAAATGAT
131 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* **
17922992 GCGATTTCTCGAGCACCGAAT
196 GCGATTTCCCGAGCATGGAAT
* * * * *
17923013 GTTCAAAAAATTGCTCGAAGGATTGGATCTTCTTAAAAACTTTAAGGAATCGAAGTTATAAAAGA
1 GTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* * * * * * * * *
17923078 ACTTGTAAAAGTCTAAAAATTTCGGAAGTTTATCCAAAAACCAAGGGAGGAACAATTCTCACGTA
66 ACTCGTAAAAGTTTGAGAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * *
17923143 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTATAAAATGGCAAACTATTTTGACCAAATGAT
131 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
*
17923208 GTGATTTCCCGAGCA
196 GCGATTTCCCGAGCA
17923223 CGAAATCTAC
Statistics
Matches: 534, Mismatches: 89, Indels: 24
0.83 0.14 0.04
Matches are distributed among these distances:
210 1 0.00
211 101 0.19
212 14 0.03
213 75 0.14
214 222 0.42
215 5 0.01
216 116 0.22
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (216 bp):
GTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
ACTCGTAAAAGTTTGAGAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA
AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
GCGATTTCCCGAGCATGGAAT
Found at i:17923193 original size:427 final size:426
Alignment explanation
Indices: 17922376--17923228 Score: 1109
Period size: 427 Copynumber: 2.0 Consensus size: 426
17922366 TGACAAGTTC
* * * ** ** *
17922376 GAAAAATTTCTCGAAGGATTGGATCGTCTTGAATAATTTATGGAACTGATGTTATAAAAGAACTC
1 GAAAAATTCCTCGAAGGAATGAATCGTCTTGAATAATTTAACGAACCAAAGTTATAAAAGAACTC
* * *
17922441 GTAATAGTTTGAGAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATA
66 ATAAAAGTTTGAGAAGTT--GAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATA
* * *
17922506 ATTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGA
129 AGTTGTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
** * *
17922571 TTTCCCGAGCATGGAATGTTCAAAAAATTGCTCAAAAATGGATCATCTTGAATACTTTAAGGAAT
194 TTTCCCGAGCACCGAATGTTCAAAAAATTGCTCAAAAATGGATCATCTTAAAAACTTTAAGGAAT
* * * ** * ** * *
17922636 TGAAGTTATAAAAGAAATCGTAAAAGTTTGAAGGTTTCAAACGTTCGTCCACGAATCTAGAGAGA
259 CGAAGTTATAAAAGAAATCGTAAAAGTCTAAAAATTTCAAACGTTCATCCAAAAACCAAGAGAGA
* *
17922701 AACAATTACCACGTAACTAATTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAAGACAAACTA
324 AACAATTACCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAAGACAAACTA
*
17922766 TTTAGACCAAAAGATGCGATTTCCCGAGCATGAAATTT
389 TTTAGACCAAAAGATGCGATTTCCCGAGCACGAAATTT
*
17922804 GAAAAATTCCTCGAAGGAATGAATCGTCTTGAATACTTTAACGAACCAAAGTTATAAAAGAACTC
1 GAAAAATTCCTCGAAGGAATGAATCGTCTTGAATAATTTAACGAACCAAAGTTATAAAAGAACTC
* * * *
17922869 ATAAAAGTTTGATAAGTT-AAGTTCATCCGAGAACCAAGAGAGAAACAATTCTTACGTAAATAAG
66 ATAAAAGTTTGAGAAGTTGAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAG
* * ** * *
17922933 TTGTTATTTCAAGGACCAAATTTTTTTTACAAAATGATAAACTATTTAGACCAAATGATGCGATT
131 TTGTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * *
17922998 TCTCGAGCACCGAATGTTCAAAAAATTGCTCGAAGGATTGGATCTTCTTAAAAACTTTAAGGAAT
196 TCCCGAGCACCGAATGTTCAAAAAATTGCTC-AA-AAATGGATCATCTTAAAAACTTTAAGGAAT
* * * * *
17923063 CGAAGTTATAAAAGAACTTGTAAAAGTCTAAAAATTTCGGAA-GTTTATCCAAAAACCAAGGGAG
259 CGAAGTTATAAAAGAAATCGTAAAAGTCTAAAAATTTC-AAACGTTCATCCAAAAACCAAGAGAG
* * * *
17923127 GAACAATT-CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTATAAAATGGCAAAC
323 AAACAATTAC-CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAAGACAAAC
* * *
17923191 TATTTTGACCAAATGATGTGATTTCCCGAGCACGAAAT
387 TATTTAGACCAAAAGATGCGATTTCCCGAGCACGAAAT
17923229 CTACAGGAAT
Statistics
Matches: 363, Mismatches: 58, Indels: 9
0.84 0.13 0.02
Matches are distributed among these distances:
425 126 0.35
426 3 0.01
427 161 0.44
428 73 0.20
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.29
Consensus pattern (426 bp):
GAAAAATTCCTCGAAGGAATGAATCGTCTTGAATAATTTAACGAACCAAAGTTATAAAAGAACTC
ATAAAAGTTTGAGAAGTTGAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAG
TTGTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
TCCCGAGCACCGAATGTTCAAAAAATTGCTCAAAAATGGATCATCTTAAAAACTTTAAGGAATCG
AAGTTATAAAAGAAATCGTAAAAGTCTAAAAATTTCAAACGTTCATCCAAAAACCAAGAGAGAAA
CAATTACCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAAGACAAACTATT
TAGACCAAAAGATGCGATTTCCCGAGCACGAAATTT
Found at i:17929065 original size:16 final size:16
Alignment explanation
Indices: 17929025--17929065 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
17929015 ATTCTGTGTG
17929025 ACGACAAAGGTATGTC
1 ACGACAAAGGTATGTC
* *
17929041 ATGAAAAAGGTATGTC
1 ACGACAAAGGTATGTC
*
17929057 GCGACAAAG
1 ACGACAAAG
17929066 AAGGCAAATT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.27, T:0.17
Consensus pattern (16 bp):
ACGACAAAGGTATGTC
Found at i:17930611 original size:18 final size:19
Alignment explanation
Indices: 17930568--17930614 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
17930558 GCTTGTCCTC
17930568 AAGCAAACAAAACAAGGAA
1 AAGCAAACAAAACAAGGAA
* *
17930587 AA-AAAACAAAATAA-GAA
1 AAGCAAACAAAACAAGGAA
17930604 AAGCAAACAAA
1 AAGCAAACAAA
17930615 GGAGCTTGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 5 0.21
18 17 0.71
19 2 0.08
ACGTcount: A:0.74, C:0.13, G:0.11, T:0.02
Consensus pattern (19 bp):
AAGCAAACAAAACAAGGAA
Found at i:17938665 original size:36 final size:37
Alignment explanation
Indices: 17938618--17938717 Score: 123
Period size: 36 Copynumber: 2.8 Consensus size: 37
17938608 CGTTATTCGC
* *
17938618 TTTACTCCCTGTTGACCTAAAGGTCATGATGCTCGT-
1 TTTACTCCCTGTTGACCCAAAGGTCATGATGCTCATG
* * * *
17938654 TTTACTCCCTGTTAACCGAAAGGTCATTATGTTCATG
1 TTTACTCCCTGTTGACCCAAAGGTCATGATGCTCATG
*
17938691 TTT-CTCCCTATTGACCCAAAGGTCATG
1 TTTACTCCCTGTTGACCCAAAGGTCATG
17938718 CTTGTTACTA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
36 51 0.94
37 3 0.06
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (37 bp):
TTTACTCCCTGTTGACCCAAAGGTCATGATGCTCATG
Found at i:17941879 original size:22 final size:22
Alignment explanation
Indices: 17941835--17941880 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
17941825 ACACTTTTTC
*
17941835 TTACTCTTTTCTTTTTGTGTCT
1 TTACTCTTTTCTTCTTGTGTCT
17941857 TTACTCATTTTCTTCTTGT-TCT
1 TTACTC-TTTTCTTCTTGTGTCT
17941879 TT
1 TT
17941881 TCACTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.07, C:0.20, G:0.07, T:0.67
Consensus pattern (22 bp):
TTACTCTTTTCTTCTTGTGTCT
Found at i:17946691 original size:18 final size:18
Alignment explanation
Indices: 17946660--17946694 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
17946650 ACTTAGTCGG
* *
17946660 TTTCTTCTTTCCTTTAGC
1 TTTCTACTTCCCTTTAGC
17946678 TTTCTACTTCCCTTTAG
1 TTTCTACTTCCCTTTAG
17946695 AGGATGAGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.29, G:0.06, T:0.57
Consensus pattern (18 bp):
TTTCTACTTCCCTTTAGC
Found at i:17953729 original size:26 final size:25
Alignment explanation
Indices: 17953642--17953792 Score: 126
Period size: 26 Copynumber: 5.9 Consensus size: 25
17953632 TTCTGAACTA
* *
17953642 TGGCTTGTAAGAGTAATATTCTGTC
1 TGGCTCGTAAGAGCAATATTCTGTC
* * ** * *
17953667 TGGCCCATAAGAGTGATATTTTGCC
1 TGGCTCGTAAGAGCAATATTCTGTC
* *
17953692 TAGCTCGTAAGAGCGATATTCTGTC
1 TGGCTCGTAAGAGCAATATTCTGTC
17953717 TGGGCTCGTAAGAGCAATATTCTGTC
1 T-GGCTCGTAAGAGCAATATTCTGTC
* *
17953743 TGGGCTCGCAAGAGCTAA-ACTCTGTC
1 T-GGCTCGTAAGAGC-AATATTCTGTC
*
17953769 TAGGCTCGTATGAGCTAA-ATTCTG
1 T-GGCTCGTAAGAGC-AATATTCTG
17953793 GAAGACCCAA
Statistics
Matches: 104, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
25 39 0.38
26 63 0.61
27 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (25 bp):
TGGCTCGTAAGAGCAATATTCTGTC
Found at i:17956126 original size:27 final size:27
Alignment explanation
Indices: 17956096--17956151 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
17956086 TGGCTTATTT
*
17956096 GAGCCAAACATAGAATAATGCTCTTTC
1 GAGCCAAACATAGAATAATGCTCCTTC
* * *
17956123 GAGCCAGATATAGAGTAATGCTCCTTC
1 GAGCCAAACATAGAATAATGCTCCTTC
17956150 GA
1 GA
17956152 CCTAGAGTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
GAGCCAAACATAGAATAATGCTCCTTC
Found at i:17959427 original size:57 final size:56
Alignment explanation
Indices: 17959330--17959560 Score: 266
Period size: 57 Copynumber: 4.1 Consensus size: 56
17959320 TTTCTACTGG
* ** * * * *
17959330 TTTTCCATATTTTACAATTTTATCACTGTTTTCCAAATTTTATAGTTTTGCTATTA
1 TTTTCCAGATTTTACAATTTTGCCACTGTTTTCCAGATTTTACAGTTTTGCCACTA
* * * *
17959386 TTTTCCAGATTTTACAGTTTTGCCACTGGTTTTCCAGATTTTACATTTTTTCCACTG
1 TTTTCCAGATTTTACAATTTTGCCACT-GTTTTCCAGATTTTACAGTTTTGCCACTA
* * *
17959443 TTTTCCAAATTTTACAATTTTTCCACTGGTTTTCCAGATTTTATAGTTTTGCCACTA
1 TTTTCCAGATTTTACAATTTTGCCACT-GTTTTCCAGATTTTACAGTTTTGCCACTA
* * * *
17959500 TTTT-CTGAATTTTACAATTTTGCCACTATTTTCTAGATTTTACAGTTTTGCCACCA
1 TTTTCCAG-ATTTTACAATTTTGCCACTGTTTTCCAGATTTTACAGTTTTGCCACTA
17959556 TTTTC
1 TTTTC
17959561 AAAAAAATTA
Statistics
Matches: 147, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
56 53 0.36
57 94 0.64
ACGTcount: A:0.22, C:0.19, G:0.09, T:0.51
Consensus pattern (56 bp):
TTTTCCAGATTTTACAATTTTGCCACTGTTTTCCAGATTTTACAGTTTTGCCACTA
Found at i:17959452 original size:85 final size:86
Alignment explanation
Indices: 17959309--17959553 Score: 273
Period size: 85 Copynumber: 2.9 Consensus size: 86
17959299 AATTGCCACT
* * * * * *
17959309 ATTTTACAATTTTTCTACTGGTTTTCCATATTTTACAATTTTAT-CACTGTTTTCCAAATTTTAT
1 ATTTTACAGTTTTGCCACTGGTTTTCCAGATTTTAC-ATTTTTTCCACTGTTTTCCAAATTTTAC
* *
17959373 AGTTTTGCTA-TTATTTTCCAG
65 AGTTTTGCCACTGATTTTCCAG
17959394 ATTTTACAGTTTTGCCACTGGTTTTCCAGATTTTACATTTTTTCCACTGTTTTCCAAATTTTACA
1 ATTTTACAGTTTTGCCACTGGTTTTCCAGATTTTACATTTTTTCCACTGTTTTCCAAATTTTACA
* * *
17959459 ATTTTTCCACTGGTTTTCCAG
66 GTTTTGCCACTGATTTTCCAG
* * * * * * * *
17959480 ATTTTATAGTTTTGCCACT-ATTTT-CTGAATTTTACAATTTTGCCACTATTTTCTAGATTTTAC
1 ATTTTACAGTTTTGCCACTGGTTTTCCAG-ATTTTACATTTTTTCCACTGTTTTCCAAATTTTAC
17959543 AGTTTTGCCAC
65 AGTTTTGCCAC
17959554 CATTTTCAAA
Statistics
Matches: 136, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
84 8 0.06
85 101 0.74
86 27 0.20
ACGTcount: A:0.22, C:0.18, G:0.09, T:0.51
Consensus pattern (86 bp):
ATTTTACAGTTTTGCCACTGGTTTTCCAGATTTTACATTTTTTCCACTGTTTTCCAAATTTTACA
GTTTTGCCACTGATTTTCCAG
Found at i:17959549 original size:28 final size:28
Alignment explanation
Indices: 17959330--17959560 Score: 230
Period size: 28 Copynumber: 8.2 Consensus size: 28
17959320 TTTCTACTGG
* * ** *
17959330 TTTTCCATATTTTACAATTTTATCACTG
1 TTTTCCAGATTTTACAGTTTTGCCACTA
* * * *
17959358 TTTTCCAAATTTTATAGTTTTGCTATTA
1 TTTTCCAGATTTTACAGTTTTGCCACTA
*
17959386 TTTTCCAGATTTTACAGTTTTGCCACTGG
1 TTTTCCAGATTTTACAGTTTTGCCACT-A
* * *
17959415 TTTTCCAGATTTTACATTTTTTCCACTG
1 TTTTCCAGATTTTACAGTTTTGCCACTA
* * * *
17959443 TTTTCCAAATTTTACAATTTTTCCACTGG
1 TTTTCCAGATTTTACAGTTTTGCCACT-A
*
17959472 TTTTCCAGATTTTATAGTTTTGCCACTA
1 TTTTCCAGATTTTACAGTTTTGCCACTA
* *
17959500 TTTT-CTGAATTTTACAATTTTGCCACTA
1 TTTTCCAG-ATTTTACAGTTTTGCCACTA
* *
17959528 TTTTCTAGATTTTACAGTTTTGCCACCA
1 TTTTCCAGATTTTACAGTTTTGCCACTA
17959556 TTTTC
1 TTTTC
17959561 AAAAAAATTA
Statistics
Matches: 170, Mismatches: 29, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
27 2 0.01
28 118 0.69
29 50 0.29
ACGTcount: A:0.22, C:0.19, G:0.09, T:0.51
Consensus pattern (28 bp):
TTTTCCAGATTTTACAGTTTTGCCACTA
Found at i:17960002 original size:45 final size:45
Alignment explanation
Indices: 17959938--17960084 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 45
17959928 ATTGGTTAAC
* * *
17959938 TATGATATAAATGACAAAATAGTTAGTATCTGATTAACTATGCTA
1 TATGATATGAATGATAAAATAGTTAGTATTTGATTAACTATGCTA
* * * *
17959983 TATGACATGAATGATAAAAT-GATTATTATTTGGTTGAGC-ATGCTA
1 TATGATATGAATGATAAAATAG-TTAGTATTTGATT-AACTATGCTA
*
17960028 TATGATATGAAT--T-ATA-AGTTAGTATTTGATTAA-TCATGCTA
1 TATGATATGAATGATAAAATAGTTAGTATTTGATTAACT-ATGCTA
*
17960069 TATGATATGCATGATA
1 TATGATATGAATGATA
17960085 TGGTAAATGT
Statistics
Matches: 81, Mismatches: 13, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
40 1 0.01
41 28 0.35
42 3 0.04
43 2 0.02
44 1 0.01
45 44 0.54
46 2 0.02
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (45 bp):
TATGATATGAATGATAAAATAGTTAGTATTTGATTAACTATGCTA
Found at i:17960066 original size:41 final size:41
Alignment explanation
Indices: 17959958--17960077 Score: 125
Period size: 41 Copynumber: 2.8 Consensus size: 41
17959948 ATGACAAAAT
* *
17959958 AGTTAGTATCTGATTAACTATGCTATATGACATGAATGATAAA
1 AGTTAGTATTTGATTAAC-ATGCTATATGATATGAAT-ATAAA
* * * *
17960001 ATGATTATTATTTGGTTGAGCATGCTATATGATATGAAT-TATA
1 A-G-TTAGTATTTGATT-AACATGCTATATGATATGAATATAAA
17960044 AGTTAGTATTTGATTAATCATGCTATATGATATG
1 AGTTAGTATTTGATTAA-CATGCTATATGATATG
17960078 CATGATATGG
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
40 1 0.02
41 27 0.42
42 1 0.02
43 5 0.08
44 1 0.02
45 27 0.42
46 2 0.03
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (41 bp):
AGTTAGTATTTGATTAACATGCTATATGATATGAATATAAA
Found at i:17960115 original size:86 final size:86
Alignment explanation
Indices: 17959958--17960118 Score: 189
Period size: 86 Copynumber: 1.9 Consensus size: 86
17959948 ATGACAAAAT
* * *
17959958 AGTTAGTATCTGATTAACTATGCTATATGACATGAATGATAAAATGATTATTATTTGGTTGAGCA
1 AGTTAGTATCTGATTAACTATGCTATATGACATGAATGATAAAATAAATATTATTTGATTGAGCA
*
17960023 TGCTATATGATATGAATTATA
66 TACTATATGATATGAATTATA
* * * *** * **
17960044 AGTTAGTATTTGATTAA-TCATGCTATATGATATGCATGATATGGTAAATGTTATTTGATTGATT
1 AGTTAGTATCTGATTAACT-ATGCTATATGACATGAATGATAAAATAAATATTATTTGATTGAGC
17960108 ATACTATATGA
65 ATACTATATGA
17960119 CACACATGAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
85 1 0.02
86 60 0.98
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.42
Consensus pattern (86 bp):
AGTTAGTATCTGATTAACTATGCTATATGACATGAATGATAAAATAAATATTATTTGATTGAGCA
TACTATATGATATGAATTATA
Found at i:17961909 original size:29 final size:29
Alignment explanation
Indices: 17961867--17962232 Score: 251
Period size: 29 Copynumber: 12.8 Consensus size: 29
17961857 CTCTTTTTTA
*
17961867 TTTCCAAAATTACATTTTGA-CCTAGAACT
1 TTTCCAAAATTACATTTTGACCCCA-AACT
*
17961896 TTTCCAAAATTACACTTTGACCCCCAAACT
1 TTTCCAAAATTACATTTTGA-CCCCAAACT
* * *
17961926 CTTCCCAAATTGCATTTTGACCACCAAACT
1 TTTCCAAAATTACATTTTGACC-CCAAACT
* *
17961956 TTTCCCAAATTATATTTTGA-CCC---C-
1 TTTCCAAAATTACATTTTGACCCCAAACT
* *
17961980 --T--AAAATTACATTTTAAACCCAAAACT
1 TTTCCAAAATTACATTTT-GACCCCAAACT
**
17962006 TTTCCAAAATTATGTTTTGACCCCAAACT
1 TTTCCAAAATTACATTTTGACCCCAAACT
* * **
17962035 TCTT-TAAAATTACATTTTAACACTTAAACT
1 T-TTCCAAAATTACATTTTGAC-CCCAAACT
*
17962065 TTAT--AAAATTACATTTTAACCCCAAACT
1 TT-TCCAAAATTACATTTTGACCCCAAACT
* * *
17962093 TTTCTAAAATCACATTTTGACCCCAAACC
1 TTTCCAAAATTACATTTTGACCCCAAACT
** * * *
17962122 TCCCCAGAATCACATTTTGACCCCTAAACC
1 TTTCCAAAATTACATTTTGACCCC-AAACT
* * *
17962152 TTTCCAAAATCACATTTTCACCCTAAACT
1 TTTCCAAAATTACATTTTGACCCCAAACT
* * *
17962181 TTTCCAAAATCACATTTTAACCCTAAA-T
1 TTTCCAAAATTACATTTTGACCCCAAACT
17962209 TCTT-CAAAACTT-CATTTTTGACCC
1 T-TTCCAAAA-TTACA-TTTTGACCC
17962233 TTTTTTATTT
Statistics
Matches: 274, Mismatches: 41, Indels: 44
0.76 0.11 0.12
Matches are distributed among these distances:
20 11 0.04
21 1 0.00
22 3 0.01
25 2 0.01
27 1 0.00
28 20 0.07
29 144 0.53
30 89 0.32
31 3 0.01
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (29 bp):
TTTCCAAAATTACATTTTGACCCCAAACT
Found at i:17961945 original size:30 final size:30
Alignment explanation
Indices: 17961867--17961979 Score: 131
Period size: 30 Copynumber: 3.8 Consensus size: 30
17961857 CTCTTTTTTA
* *
17961867 TTTCCAAAATTACATTTTGA--CCTAGAACT
1 TTTCCCAAATTACATTTTGACCCCCA-AACT
* *
17961896 TTTCCAAAATTACACTTTGACCCCCAAACT
1 TTTCCCAAATTACATTTTGACCCCCAAACT
* * *
17961926 CTTCCCAAATTGCATTTTGACCACCAAACT
1 TTTCCCAAATTACATTTTGACCCCCAAACT
*
17961956 TTTCCCAAATTATATTTTGACCCC
1 TTTCCCAAATTACATTTTGACCCC
17961980 TAAAATTACA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
29 19 0.27
30 49 0.69
31 3 0.04
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (30 bp):
TTTCCCAAATTACATTTTGACCCCCAAACT
Found at i:17962168 original size:59 final size:58
Alignment explanation
Indices: 17962069--17962207 Score: 163
Period size: 59 Copynumber: 2.4 Consensus size: 58
17962059 TAAACTTTAT
* * * *
17962069 AAAATTACATTTTAACCCC-AAACTTTTCTAAAATCACATTTTGACCCCAAACCTCCCC
1 AAAATCACATTTT-ACCCCTAAACCTTTCCAAAATCACATTTTCACCCCAAACCTCCCC
* * * **
17962127 AGAATCACATTTTGACCCCTAAACCTTTCCAAAATCACATTTTCACCCTAAACTTTTCC
1 AAAATCACATTTT-ACCCCTAAACCTTTCCAAAATCACATTTTCACCCCAAACCTCCCC
*
17962186 AAAATCACATTTTAACCCTAAA
1 AAAATCACATTTTACCCCTAAA
17962208 TTCTTCAAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
58 24 0.35
59 44 0.65
ACGTcount: A:0.37, C:0.31, G:0.02, T:0.30
Consensus pattern (58 bp):
AAAATCACATTTTACCCCTAAACCTTTCCAAAATCACATTTTCACCCCAAACCTCCCC
Found at i:17962228 original size:88 final size:86
Alignment explanation
Indices: 17961981--17962232 Score: 254
Period size: 88 Copynumber: 2.9 Consensus size: 86
17961971 TTTGACCCCT
* ** *
17961981 AAAATTACATTTTAAACCCAAAACTTTTCCAAAATTATGTTTTGACCCCAAACTTCTTTAAAATT
1 AAAATTACATTTT-AACCCAAAACTTTTCCAAAATCACATTTTGACCCCAAACTTCTTCAAAATT
* * * *
17962046 ACATTTTAACACTTAAACTTTAT
65 -CATTTTGACCCCTAAACTTTAC
* * * ** * *
17962069 AAAATTACATTTTAACCCCAAACTTTTCTAAAATCACATTTTGACCCCAAACCTCCCCAGAATCA
1 AAAATTACATTTTAACCCAAAACTTTTCCAAAATCACATTTTGACCCCAAACTTCTTCAAAAT-T
*
17962134 CATTTTGACCCCTAAACCTTTCC
65 CATTTTGACCCCTAAA-CTTTAC
* * * * *
17962157 AAAATCACATTTTCACCCTAAACTTTTCCAAAATCACATTTTAACCCTAAA-TTCTTCAAAACTT
1 AAAATTACATTTTAACCCAAAACTTTTCCAAAATCACATTTTGACCCCAAACTTCTTCAAAA-TT
17962221 CATTTTTGACCC
65 CA-TTTTGACCC
17962233 TTTTTTATTT
Statistics
Matches: 133, Mismatches: 27, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
87 61 0.46
88 72 0.54
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.35
Consensus pattern (86 bp):
AAAATTACATTTTAACCCAAAACTTTTCCAAAATCACATTTTGACCCCAAACTTCTTCAAAATTC
ATTTTGACCCCTAAACTTTAC
Found at i:17969722 original size:23 final size:23
Alignment explanation
Indices: 17969638--17969813 Score: 135
Period size: 23 Copynumber: 7.6 Consensus size: 23
17969628 ATATACGGAA
* * *
17969638 TAAACAAAGAGTAC-CAAAGTAC
1 TAAACAGAGAGCACACAAAGTGC
*
17969660 T-AACAGAGAGCACA-GAAGTGC
1 TAAACAGAGAGCACACAAAGTGC
* *
17969681 TGGGAAACAGAAAGCACACACAGTGC
1 T---AAACAGAGAGCACACAAAGTGC
* *
17969707 TAAACAGAGAGTACACAAAGTAC
1 TAAACAGAGAGCACACAAAGTGC
* *
17969730 TAATCAGAGAGCACATAAAGTGC
1 TAAACAGAGAGCACACAAAGTGC
** *
17969753 TAATTAGAGAGCACACACAGTGC
1 TAAACAGAGAGCACACAAAGTGC
* *
17969776 TAATAACAGAGAGCACGA-GACGTGC
1 T-A-AACAGAGAGCAC-ACAAAGTGC
17969801 TAAACAGAGAGCA
1 TAAACAGAGAGCA
17969814 TGCTAGTGTT
Statistics
Matches: 122, Mismatches: 23, Indels: 17
0.75 0.14 0.10
Matches are distributed among these distances:
21 16 0.13
22 1 0.01
23 69 0.57
24 2 0.02
25 27 0.22
26 7 0.06
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.12
Consensus pattern (23 bp):
TAAACAGAGAGCACACAAAGTGC
Found at i:17969766 original size:69 final size:67
Alignment explanation
Indices: 17969638--17969788 Score: 187
Period size: 69 Copynumber: 2.2 Consensus size: 67
17969628 ATATACGGAA
* *
17969638 TAAACAAAGAGTACCAAAGTACTAACAGAGAGCACAGAAGTGCTGGGAAACAGAAAGCACACACA
1 TAAACAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCT--GAAACAGAAAGCACACACA
17969703 GTGC
64 GTGC
** *
17969707 TAAACAGAGAGTACACAAAGTACTAATCAGAGAGCACATAAAGTGCT-AATTAGAGAGCACACAC
1 TAAACAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACA-AAAGTGCTGAAACAGAAAGCACACAC
17969771 AGTGC
63 AGTGC
17969776 TAATAACAGAGAG
1 T-A-AACAGAGAG
17969789 CACGAGACGT
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
69 33 0.46
70 12 0.17
71 20 0.28
72 7 0.10
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (67 bp):
TAAACAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCTGAAACAGAAAGCACACACAGT
GC
Found at i:17969800 original size:25 final size:23
Alignment explanation
Indices: 17969661--17969813 Score: 139
Period size: 23 Copynumber: 6.5 Consensus size: 23
17969651 CCAAAGTACT
*
17969661 AACAGAGAGCACAGA-AGTGCTGGGA
1 AACAGAGAGCACACACAGTGCT---A
*
17969686 AACAGAAAGCACACACAGTGCTA
1 AACAGAGAGCACACACAGTGCTA
* * *
17969709 AACAGAGAGTACACAAAGTACTA
1 AACAGAGAGCACACACAGTGCTA
* * *
17969732 ATCAGAGAGCACATAAAGTGCTA
1 AACAGAGAGCACACACAGTGCTA
**
17969755 ATTAGAGAGCACACACAGTGCTAA
1 AACAGAGAGCACACACAGTGCT-A
*
17969779 TAACAGAGAGCACGAGAC-GTGCTA
1 -AACAGAGAGCAC-ACACAGTGCTA
17969803 AACAGAGAGCA
1 AACAGAGAGCA
17969814 TGCTAGTGTT
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
23 69 0.64
24 2 0.02
25 28 0.26
26 9 0.08
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.12
Consensus pattern (23 bp):
AACAGAGAGCACACACAGTGCTA
Found at i:17974464 original size:99 final size:98
Alignment explanation
Indices: 17974321--17974964 Score: 562
Period size: 99 Copynumber: 6.5 Consensus size: 98
17974311 AATACCCTGG
* *
17974321 AGATATGAAGGGAAAGGTTGAGGCTGCAACGACGAACCCGGTACCTTAGAAGATGTGATGGGAAA
1 AGATATGAAAGGAAAGGTTGAGGCCGCAACGACGAA-CCGGTACCTTAGAAGATGTGATGGGAAA
* *
17974386 GGTTGAGGCCGCAACGGCGAACCTGGTACCATGA
65 GGTTGAGGCCGCAACGGCGAACCCGGCACCATGA
* * * * * *
17974420 AGATTTGAAAGG-AAGGATTGAGACCGCGACAACGAATCCAGTACCTTAGAAGATATGATGGGAA
1 AGATATGAAAGGAAAGG-TTGAGGCCGCAACGACGAA-CCGGTACCTTAGAAGATGTGATGGGAA
** * *
17974484 AGGTTGAGGCTACAACAGCGAACCCGGTACCATGA
64 AGGTTGAGGCCGCAACGGCGAACCCGGCACCATGA
* * * * * * * *
17974519 AGAT-TTAAAGGGAAGGATTGAGGCCGCAATGGCAAATCCGGTACCAT-GAAGATTTGAAGGG-A
1 AGATATGAAAGGAAAGG-TTGAGGCCGCAACGACGAA-CCGGTACCTTAGAAGATGTGATGGGAA
** * * * *
17974581 AGGATTGAGGCCGTGATGGCGAACCCGACACCTTAAA
64 AGG-TTGAGGCCGCAACGGCGAACCCGGCACCAT-GA
* ** * * * * * *
17974618 AGATGTGATGGGAAAGGTTGGGGCCGTAACGACGAACCCGATACCAT-GAAGATTTGAAGGGAAA
1 AGATATGAAAGGAAAGGTTGAGGCCGCAACGACGAA-CCGGTACCTTAGAAGATGTGATGGGAAA
** *
17974682 GGTTGAGGCCGCAACGGTAAACTCGGCACCATGA
65 GGTTGAGGCCGCAACGGCGAACCCGGCACCATGA
* * *
17974716 AGATATGAAGGGAAAGGTTGAGGCCACAACGACGAACCCGGTACCTTAGAAGATGTGATGGGAGA
1 AGATATGAAAGGAAAGGTTGAGGCCGCAACGACGAA-CCGGTACCTTAGAAGATGTGATGGGAAA
* *** * *
17974781 GGTTGAGGCCACAACAATGAACCCGACACCATAA
65 GGTTGAGGCCGCAACGGCGAACCCGGCACCATGA
* ** * *
17974815 AGATAT-AAAGGGAAAGGTTGAGGCTGCAACGGTGAACCCGATACCTTAGAAGATGTGATGAGAA
1 AGATATGAAA-GGAAAGGTTGAGGCCGCAACGACGAA-CCGGTACCTTAGAAGATGTGATGGGAA
* * * *
17974879 AGGTTGAGGTCGTAACGACGAACCCGGTACCATGA
64 AGGTTGAGGCCGCAACGGCGAACCCGGCACCATGA
* * * * * *
17974914 AGAAATGAAGGGAAAGGTTGATGCCGTAACGGCGAACCTAGTACCTTAGAA
1 AGATATGAAAGGAAAGGTTGAGGCCGCAACGACGAACC-GGTACCTTAGAA
17974965 ACATGACAAG
Statistics
Matches: 440, Mismatches: 95, Indels: 20
0.79 0.17 0.04
Matches are distributed among these distances:
97 4 0.01
98 88 0.20
99 334 0.76
100 14 0.03
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.17
Consensus pattern (98 bp):
AGATATGAAAGGAAAGGTTGAGGCCGCAACGACGAACCGGTACCTTAGAAGATGTGATGGGAAAG
GTTGAGGCCGCAACGGCGAACCCGGCACCATGA
Found at i:17974562 original size:148 final size:146
Alignment explanation
Indices: 17974321--17974934 Score: 581
Period size: 148 Copynumber: 4.1 Consensus size: 146
17974311 AATACCCTGG
* ** * * * * *
17974321 AGATATGAAGGGAAAGGTTGAGGCTGCAACGACGAACCCGGTACCTTAGAAGATGTGATGGGAAA
1 AGATATGATGGGAAAGGTTGAGGCCACAACGACGAACCCGATACCAT-GAAGATTTAAAGGGAAA
* * * *
17974386 GGTTGAGGCCGCAACGGCGAACCTGGTACCATGAAGATTTGAAAGGAAGGATTGAGACCGCGACA
65 GGTTGAGGCCGCAACGGCAAACC-GGTACCATGAAGATTTGAAGGGAAGGATTGAGGCCGCGACG
17974451 ACGAATCCAGTACCTTAGA
129 ACGAA-CCAGTACCTTAGA
* *
17974470 AGATATGATGGGAAAGGTTGAGGCTACAAC-AGCGAACCCGGTACCATGAAGATTTAAAGGG-AA
1 AGATATGATGGGAAAGGTTGAGGCCACAACGA-CGAACCCGATACCATGAAGATTTAAAGGGAAA
* * *
17974533 GGATTGAGGCCGCAATGGCAAATCCGGTACCATGAAGATTTGAAGGGAAGGATTGAGGCCGTGAT
65 GG-TTGAGGCCGCAACGGCAAA-CCGGTACCATGAAGATTTGAAGGGAAGGATTGAGGCCGCGAC
* * * *
17974598 GGCGAACCCGACACCTTAAA
128 GACGAACCAG-TACCTTAGA
* * ** *
17974618 AGATGTGATGGGAAAGGTTGGGGCCGTAACGACGAACCCGATACCATGAAGATTTGAAGGGAAAG
1 AGATATGATGGGAAAGGTTGAGGCCACAACGACGAACCCGATACCATGAAGATTTAAAGGGAAAG
* * * * *
17974683 GTTGAGGCCGCAACGGTAAACTCGGCACCATGAAGATATGAAGGGAAAGG-TTGAGGCCACAACG
66 GTTGAGGCCGCAACGGCAAAC-CGGTACCATGAAGATTTGAAGGG-AAGGATTGAGGCCGCGACG
*
17974747 ACGAACCCGGTACCTTAGA
129 ACGAA-CCAGTACCTTAGA
* * * * * * *
17974766 AGATGTGATGGGAGAGGTTGAGGCCACAACAATGAACCCGACACCATAAAGATATAAAGGGAAAG
1 AGATATGATGGGAAAGGTTGAGGCCACAACGACGAACCCGATACCATGAAGATTTAAAGGGAAAG
* * * * * * * * * **
17974831 GTTGAGGCTGCAACGGTGAACCCGATACCTTAGAAGATGTGATGAGAAAGG-TTGAGGTCGTAAC
66 GTTGAGGCCGCAACGG-CAAACCGGTACCAT-GAAGATTTGAAG-GGAAGGATTGAGGCCGCGAC
* *
17974895 GACGAACCCGGTACCAT-GA
128 GACGAA-CCAGTACCTTAGA
* *
17974914 AGAAATGAAGGGAAAGGTTGA
1 AGATATGATGGGAAAGGTTGA
17974935 TGCCGTAACG
Statistics
Matches: 390, Mismatches: 63, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
147 8 0.02
148 282 0.72
149 99 0.25
150 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.32, T:0.17
Consensus pattern (146 bp):
AGATATGATGGGAAAGGTTGAGGCCACAACGACGAACCCGATACCATGAAGATTTAAAGGGAAAG
GTTGAGGCCGCAACGGCAAACCGGTACCATGAAGATTTGAAGGGAAGGATTGAGGCCGCGACGAC
GAACCAGTACCTTAGA
Found at i:17974789 original size:247 final size:245
Alignment explanation
Indices: 17974281--17974945 Score: 750
Period size: 247 Copynumber: 2.7 Consensus size: 245
17974271 CAGGTTTGAC
* ** * *
17974281 AGGGAA-GATTGAGGCCGCAATGCCAAATCTAATACCCTGGAGATATGAAGGGAAAGGTTGAGGC
1 AGGGAAGGATTGAGGCCGCAATGACAAATCCGATACCATGAAGATATGAAGGGAAAGGTTGAGGC
* * * * *
17974345 TGCAACGACGAACCCGGTACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCT
66 TGCAACGGCGAACCCGATACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGTAACGACGAACCC
* * * * *
17974410 GGTACCATGAAGATTTGAAAGG-AAGGATTGAGACCGCGACAAC-GAATCCAGTACCTTAGAAGA
131 GGTACCATGAAGATTTGAAGGGAAAGG-TTGAG-GC-CG-CAACGGAAACCAGCACCATAGAAGA
* * *
17974473 TATGATGGGAAAGGTTGAGGCTACAACAGCGAACCCGGTACCATGAAGATTTAA
192 TATGAAGGGAAAGGTTGAGGCCACAACAGCGAACCCGGTACCATGAAGATGTAA
* * *
17974527 AGGGAAGGATTGAGGCCGCAATGGCAAATCCGGTACCATGAAGATTTGAAGGG-AAGGATTGAGG
1 AGGGAAGGATTGAGGCCGCAATGACAAATCCGATACCATGAAGATATGAAGGGAAAGG-TTGAGG
* ** * * * *
17974591 CCGTGATGGCGAACCCGACACCTTAAAAGATGTGATGGGAAAGGTTGGGGCCGTAACGACGAACC
65 CTGCAACGGCGAACCCGATACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGTAACGACGAACC
* *
17974656 CGATACCATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGGTAAACTCGGCACCAT-GAAGAT
130 CGGTACCATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGG-AAAC-CAGCACCATAGAAGAT
* *
17974720 ATGAAGGGAAAGGTTGAGGCCACAAC-GACGAACCCGGTACCTTAGAAGATGTGA
193 ATGAAGGGAAAGGTTGAGGCCACAACAG-CGAACCCGGTACCAT-GAAGATGTAA
* * ** ** * * * *
17974774 TGGGAGAGG-TTGAGGCCACAACAATGAACCCGACACCATAAAGATATAAAGGGAAAGGTTGAGG
1 AGGGA-AGGATTGAGGCCGCAATGACAAATCCGATACCATGAAGATATGAAGGGAAAGGTTGAGG
* * *
17974838 CTGCAACGGTGAACCCGATACCTTAGAAGATGTGATGAGAAAGGTTGAGGTCGTAACGACGAACC
65 CTGCAACGGCGAACCCGATACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGTAACGACGAACC
** * *
17974903 CGGTACCATGAAGAAATGAAGGGAAAGGTTGATGCCGTAACGG
130 CGGTACCATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGG
17974946 CGAACCTAGT
Statistics
Matches: 350, Mismatches: 59, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
244 4 0.01
245 4 0.01
246 58 0.17
247 273 0.78
248 11 0.03
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.17
Consensus pattern (245 bp):
AGGGAAGGATTGAGGCCGCAATGACAAATCCGATACCATGAAGATATGAAGGGAAAGGTTGAGGC
TGCAACGGCGAACCCGATACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGTAACGACGAACCC
GGTACCATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGGAAACCAGCACCATAGAAGATATG
AAGGGAAAGGTTGAGGCCACAACAGCGAACCCGGTACCATGAAGATGTAA
Found at i:17974837 original size:49 final size:49
Alignment explanation
Indices: 17974321--17974951 Score: 462
Period size: 49 Copynumber: 12.8 Consensus size: 49
17974311 AATACCCTGG
* * *
17974321 AGATATGAAGGGAAAGGTTGAGGCTGCAACGACGAACCCGGTACCTTAGA
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCATA-A
* * * * * *
17974371 AGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCTGGTACCATGA
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCATAA
* * * * * * *
17974420 AGATTTGAAAGG-AAGGATTGAGACCGCGACAACGAATCC-AGTACCTTAGA
1 AGATATGAAGGGAAAGG-TTGAGGCCGCAACGACGAACCCGA-TACCATA-A
* ** * *
17974470 AGATATGATGGGAAAGGTTGAGGCTACAAC-AGCGAACCCGGTACCATGA
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACGA-CGAACCCGATACCATAA
* * * * * * * *
17974519 AGATTTAAAGGG-AAGGATTGAGGCCGCAATGGCAAATCCGGTACCATGA
1 AGATATGAAGGGAAAGG-TTGAGGCCGCAACGACGAACCCGATACCATAA
* ** * * * *
17974568 AGATTTGAAGGG-AAGGATTGAGGCCGTGATGGCGAACCCGACACCTTAAA
1 AGATATGAAGGGAAAGG-TTGAGGCCGCAACGACGAACCCGATACCAT-AA
* * * * *
17974618 AGATGTGATGGGAAAGGTTGGGGCCGTAACGACGAACCCGATACCATGA
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCATAA
* *** * ** *
17974667 AGATTTGAAGGGAAAGGTTGAGGCCGCAACGGTAAACTCGGCACCATGA
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCATAA
* * *
17974716 AGATATGAAGGGAAAGGTTGAGGCCACAACGACGAACCCGGTACCTTAGA
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCATA-A
* * * * * * *
17974766 AGATGTGATGGGAGAGGTTGAGGCCACAACAATGAACCCGACACCATAA
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCATAA
* * ** *
17974815 AGATATAAAGGGAAAGGTTGAGGCTGCAACGGTGAACCCGATACCTTAGA
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCATA-A
* * * * * * *
17974865 AGATGTGATGAGAAAGGTTGAGGTCGTAACGACGAACCCGGTACCATGA
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCATAA
* * * *
17974914 AGAAATGAAGGGAAAGGTTGATGCCGTAACGGCGAACC
1 AGATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACC
17974952 TAGTACCTTA
Statistics
Matches: 456, Mismatches: 113, Indels: 25
0.77 0.19 0.04
Matches are distributed among these distances:
48 8 0.02
49 256 0.56
50 184 0.40
51 8 0.02
ACGTcount: A:0.34, C:0.18, G:0.32, T:0.16
Consensus pattern (49 bp):
AGATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCATAA
Found at i:17975316 original size:85 final size:85
Alignment explanation
Indices: 17975169--17975326 Score: 210
Period size: 85 Copynumber: 1.9 Consensus size: 85
17975159 CTAAACCTCA
* * * * * * **
17975169 TCTTCCTGATGAGATATAGAGAAGTGGGTTGAAGCAATAAAGTGTTCATTTTCCTGACGAGATGT
1 TCTTCCTGATGAGATACAGAGAAATGGATTAAAACAATAAAGTGTTCATCTTCCTGACGAGATAC
17975234 AGAGAAGTGAACCAAATCCG
66 AGAGAAGTGAACCAAATCCG
* *
17975254 TCTTCCTGATGAGATACAGAGAAATGGATTAAAACAATTAAGCTG-TCATCTTCCTGATGAGATA
1 TCTTCCTGATGAGATACAGAGAAATGGATTAAAACAATAAAG-TGTTCATCTTCCTGACGAGATA
17975318 CAGAGAAGT
65 CAGAGAAGT
17975327 AGATCAAGAG
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
85 60 0.97
86 2 0.03
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (85 bp):
TCTTCCTGATGAGATACAGAGAAATGGATTAAAACAATAAAGTGTTCATCTTCCTGACGAGATAC
AGAGAAGTGAACCAAATCCG
Found at i:17977364 original size:29 final size:29
Alignment explanation
Indices: 17977322--17977670 Score: 271
Period size: 29 Copynumber: 11.9 Consensus size: 29
17977312 CCCTTTTTTA
17977322 TTTCCAAAATTACATTTTGA-CCTAGAACT
1 TTTCCAAAATTACATTTTGACCCTA-AACT
* **
17977351 TTTCCAAAATTACACTTAAACCCTCAAA-T
1 TTTCCAAAATTACATTTTGACCCT-AAACT
** *
17977380 TTTCTC-AAATTGTATTTTGACCACCAAACT
1 TTTC-CAAAATTACATTTTGACC-CTAAACT
*
17977410 TTTCCAAAATTATATTTTGACCCCTAAAC-
1 TTTCCAAAATTACATTTTGA-CCCTAAACT
* *
17977439 TTCCCTAAAATTACATTTTGAACCTAAAAC-
1 TTTCC-AAAATTACATTTTGACCCT-AAACT
* * *
17977469 TTTCCAAAATTATATTTTGACCCCAAGCT
1 TTTCCAAAATTACATTTTGACCCTAAACT
* * *
17977498 TCTT-TAAAAATACATTTTAACCCTTAAA-T
1 T-TTCCAAAATTACATTTTGACCC-TAAACT
*
17977527 TTTCTAAAATTACATTTTGACCCTAAACT
1 TTTCCAAAATTACATTTTGACCCTAAACT
* * * * * *
17977556 TTTCAAAAATCACATTCTAACCCCAAACC
1 TTTCCAAAATTACATTTTGACCCTAAACT
** * * * *
17977585 TCCCCAAAATCACATTTTAACCCCCAAACC
1 TTTCCAAAATTACATTTTGA-CCCTAAACT
* *
17977615 TTTCCAAAATCACATTTTCACCCTAAACT
1 TTTCCAAAATTACATTTTGACCCTAAACT
* *
17977644 TTTCCAAAATCACATTTTAACCCTAAA
1 TTTCCAAAATTACATTTTGACCCTAAA
17977671 TTCTTCAAAA
Statistics
Matches: 262, Mismatches: 43, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
28 9 0.03
29 168 0.64
30 82 0.31
31 3 0.01
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.34
Consensus pattern (29 bp):
TTTCCAAAATTACATTTTGACCCTAAACT
Found at i:17977645 original size:88 final size:86
Alignment explanation
Indices: 17977504--17977666 Score: 236
Period size: 88 Copynumber: 1.9 Consensus size: 86
17977494 AGCTTCTTTA
** * * * *
17977504 AAAATACATTTTAACCCTTAAATTTTCTAAAATTACATTTTGACCCTAAACTTTTCAAAAATCAC
1 AAAATACATTTTAACCCCCAAACTTTCCAAAATCACATTTTCACCCTAAACTTTTCAAAAATCAC
17977569 ATTCTAACCCCAAACCTCCCC
66 ATTCTAACCCCAAACCTCCCC
*
17977590 AAAATCACATTTTAACCCCCAAACCTTTCCAAAATCACATTTTCACCCTAAACTTTTCCAAAATC
1 AAAAT-ACATTTTAACCCCCAAA-CTTTCCAAAATCACATTTTCACCCTAAACTTTTCAAAAATC
*
17977655 ACATTTTAACCC
64 ACATTCTAACCC
17977667 TAAATTCTTC
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
86 5 0.07
87 15 0.22
88 47 0.70
ACGTcount: A:0.38, C:0.30, G:0.01, T:0.31
Consensus pattern (86 bp):
AAAATACATTTTAACCCCCAAACTTTCCAAAATCACATTTTCACCCTAAACTTTTCAAAAATCAC
ATTCTAACCCCAAACCTCCCC
Found at i:17979257 original size:34 final size:36
Alignment explanation
Indices: 17979214--17979285 Score: 103
Period size: 36 Copynumber: 2.1 Consensus size: 36
17979204 TTTTATTTAC
* *
17979214 TTGATTGTTT-T-ATATATGAATGAATTGAAAATCT
1 TTGATTGTTTATGATACATGAATCAATTGAAAATCT
*
17979248 TTGATTGTTTATGATACATGGATCAATTGAAAATCT
1 TTGATTGTTTATGATACATGAATCAATTGAAAATCT
17979284 TT
1 TT
17979286 CTATTTATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 10 0.30
35 1 0.03
36 22 0.67
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.46
Consensus pattern (36 bp):
TTGATTGTTTATGATACATGAATCAATTGAAAATCT
Found at i:17979399 original size:34 final size:34
Alignment explanation
Indices: 17979214--17979411 Score: 139
Period size: 34 Copynumber: 6.0 Consensus size: 34
17979204 TTTTATTTAC
17979214 TTGATTGTTT-T-ATATATGAATGAATTGAAAATCT
1 TTGATTGTTTATGATATATGAATGAATTG-AAAT-T
* * *
17979248 TTGATTGTTTATGATACATGGATCAATTGAAAATCT
1 TTGATTGTTTATGATATATGAATGAATTG-AAAT-T
* * * **
17979284 TT--CTATTTATGATATATGAATGGATT-ACTTT
1 TTGATTGTTTATGATATATGAATGAATTGAAATT
* *
17979315 TTTATTGATTATGATATATGAATGAA-T----TT
1 TTGATTGTTTATGATATATGAATGAATTGAAATT
* * * *
17979344 GTGATTCTTTGTGATACATGAATGAATT-AAATT
1 TTGATTGTTTATGATATATGAATGAATTGAAATT
*
17979377 ATTGATTGTTTATAATATATGAATGAATTGAAATT
1 -TTGATTGTTTATGATATATGAATGAATTGAAATT
17979412 CTTAAACTGT
Statistics
Matches: 128, Mismatches: 26, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
29 22 0.17
30 1 0.01
31 3 0.02
32 3 0.02
33 20 0.16
34 51 0.40
35 6 0.05
36 22 0.17
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.46
Consensus pattern (34 bp):
TTGATTGTTTATGATATATGAATGAATTGAAATT
Found at i:17980416 original size:28 final size:29
Alignment explanation
Indices: 17980355--17980456 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
17980345 AATTGCCATT
*
17980355 ATTTTACAGTTTTGCCACTAGTTTTCCAG
1 ATTTTACAGTTTTGCCATTAGTTTTCCAG
*
17980384 ATTTTACAATTTTGCCATTA-TTTTCCAG
1 ATTTTACAGTTTTGCCATTAGTTTTCCAG
* *
17980412 ATTTTACAGTTTTGCCATTAGTTTTTCAA
1 ATTTTACAGTTTTGCCATTAGTTTTCCAG
*
17980441 ATTTTATAGTTTTGCC
1 ATTTTACAGTTTTGCC
17980457 TTCTAAGTGC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 27 0.41
29 39 0.59
ACGTcount: A:0.23, C:0.17, G:0.11, T:0.50
Consensus pattern (29 bp):
ATTTTACAGTTTTGCCATTAGTTTTCCAG
Found at i:17980801 original size:10 final size:10
Alignment explanation
Indices: 17980786--17980861 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
17980776 AAAAAACTTG
*
17980786 TTTAAAATTT
1 TTTAAAATTA
17980796 TTTAAAATTA
1 TTTAAAATTA
*
17980806 TTAAAAATTA
1 TTTAAAATTA
*
17980816 --TAAAAATA
1 TTTAAAATTA
17980824 TTCTAAAA-TA
1 TT-TAAAATTA
17980834 TTTAAAAGTTA
1 TTTAAAA-TTA
*
17980845 -TAAAAATTA
1 TTTAAAATTA
17980854 TTTTAAAA
1 -TTTAAAA
17980862 CTTAAAATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
8 6 0.11
9 8 0.15
10 27 0.51
11 12 0.23
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (10 bp):
TTTAAAATTA
Found at i:17980822 original size:29 final size:29
Alignment explanation
Indices: 17980789--17980861 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
17980779 AAACTTGTTT
17980789 AAAATTTTTTAAAAT-TATTAAAAATTATA
1 AAAATTTTTTAAAATAT-TTAAAAATTATA
* * *
17980818 AAAATATTCTAAAATATTTAAAAGTTATA
1 AAAATTTTTTAAAATATTTAAAAATTATA
17980847 AAAATTATTTTAAAA
1 AAAATT-TTTTAAAA
17980862 CTTAAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 29 0.78
30 8 0.22
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (29 bp):
AAAATTTTTTAAAATATTTAAAAATTATA
Found at i:17980892 original size:31 final size:31
Alignment explanation
Indices: 17980846--17980916 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
17980836 TAAAAGTTAT
*
17980846 AAAAATTA--TTTTAAAACTTAAAATTTGT-A
1 AAAAATTATTTTTTAAAA-TTAAAAATTGTGA
17980875 AAAAATTATTTTTTAAAATTAAAAATTGTGA
1 AAAAATTATTTTTTAAAATTAAAAATTGTGA
*
17980906 AAGAATTATTT
1 AAAAATTATTT
17980917 AAAATTATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
29 8 0.22
30 10 0.27
31 19 0.51
ACGTcount: A:0.51, C:0.01, G:0.06, T:0.42
Consensus pattern (31 bp):
AAAAATTATTTTTTAAAATTAAAAATTGTGA
Found at i:17982766 original size:27 final size:27
Alignment explanation
Indices: 17982736--17982789 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
17982726 CTTTAAATTT
* * *
17982736 TGTTTTGTTTATATTTAAGTCCTTTTA
1 TGTTTTGTTTAAAATTAAATCCTTTTA
*
17982763 TGTTTTTTTTAAAATTAAATCCTTTTA
1 TGTTTTGTTTAAAATTAAATCCTTTTA
17982790 AAATTTAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.61
Consensus pattern (27 bp):
TGTTTTGTTTAAAATTAAATCCTTTTA
Found at i:17984174 original size:15 final size:16
Alignment explanation
Indices: 17984145--17984177 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
17984135 TTTTTGTTTA
*
17984145 TTTATTTATTGTAATT
1 TTTATTTATTATAATT
17984161 TTTATTT-TTATAATT
1 TTTATTTATTATAATT
17984176 TT
1 TT
17984178 CATGCTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (16 bp):
TTTATTTATTATAATT
Found at i:17987637 original size:37 final size:37
Alignment explanation
Indices: 17987544--17987662 Score: 98
Period size: 38 Copynumber: 3.1 Consensus size: 37
17987534 TAAATTTTAG
* * *
17987544 AAAAATTATTAAATTTTAATAAAAATTTAAAAATTATT
1 AAAAATTATAAAATTTT-ATAAAAATTTAAAAAATATA
**
17987582 AAAAATTCA-AACTTTTTTATAAAAATTGTAAAAAATA-A
1 AAAAATT-ATAA-AATTTTATAAAAATT-TAAAAAATATA
* *
17987620 AAAAATTATAAAATTTTATAGAAATCATAAAAAAATTATA
1 AAAAATTATAAAATTTTATAAAAAT--TTAAAAAA-TATA
17987660 AAA
1 AAA
17987663 TGCATCGAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
37 12 0.19
38 32 0.50
39 16 0.25
40 4 0.06
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (37 bp):
AAAAATTATAAAATTTTATAAAAATTTAAAAAATATA
Found at i:17987932 original size:11 final size:11
Alignment explanation
Indices: 17987916--17987960 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
17987906 CTTTATAAAA
17987916 TTTTATAATTT
1 TTTTATAATTT
*
17987927 TTTTATATTTT
1 TTTTATAATTT
*
17987938 TTTTACAATTT
1 TTTTATAATTT
* *
17987949 TTATAAAATTT
1 TTTTATAATTT
17987960 T
1 T
17987961 ACAATTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:17987978 original size:11 final size:10
Alignment explanation
Indices: 17987916--17988016 Score: 59
Period size: 10 Copynumber: 10.3 Consensus size: 10
17987906 CTTTATAAAA
17987916 TTTTATAATT
1 TTTTATAATT
17987926 TTTT-TATATT
1 TTTTATA-ATT
* *
17987936 TTTTTTACAAT
1 TTTTATA-ATT
**
17987947 TTTTATAAAA
1 TTTTATAATT
*
17987957 TTTTACAATT
1 TTTTATAATT
17987967 TTTTAT-ATAT
1 TTTTATAAT-T
**
17987977 TTTTACGA-T
1 TTTTATAATT
*
17987986 TTTTAT-ATA
1 TTTTATAATT
17987995 TTTT-TAATT
1 TTTTATAATT
*
17988004 TTTAATAATT
1 TTTTATAATT
17988014 TTT
1 TTT
17988017 ATTAAAATTT
Statistics
Matches: 71, Mismatches: 13, Indels: 14
0.72 0.13 0.14
Matches are distributed among these distances:
8 2 0.03
9 19 0.27
10 39 0.55
11 11 0.15
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (10 bp):
TTTTATAATT
Found at i:17988004 original size:17 final size:18
Alignment explanation
Indices: 17987926--17988017 Score: 89
Period size: 19 Copynumber: 4.9 Consensus size: 18
17987916 TTTTATAATT
*
17987926 TTTTTATATTTTTTTTACAA
1 TTTTTATA-TATTTTTAC-A
* *
17987946 TTTTTATAAAATTTTACAA
1 TTTTTATATATTTTTAC-A
17987965 TTTTTTATATATTTTTACGA
1 -TTTTTATATATTTTTAC-A
17987985 TTTTTATATATTTTTA-A
1 TTTTTATATATTTTTACA
17988002 TTTTTA-ATAATTTTTA
1 TTTTTATAT-ATTTTTA
17988018 TTAAAATTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
16 2 0.03
17 14 0.22
19 24 0.38
20 24 0.38
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (18 bp):
TTTTTATATATTTTTACA
Done.