Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 65 of 132
Found at i:18266924 original size:2 final size:2
Alignment explanation
Indices: 18266917--18266969 Score: 72
Period size: 2 Copynumber: 27.0 Consensus size: 2
18266907 TAGTAATGTA
*
18266917 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
18266958 AT TT AT AA AT AT
1 AT AT AT AT AT AT
18266970 TGACTATGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:18267221 original size:22 final size:22
Alignment explanation
Indices: 18267169--18267248 Score: 97
Period size: 22 Copynumber: 3.5 Consensus size: 22
18267159 GACCTTAGCA
18267169 TGCTCTCCGTTATTAGCACGTGTAG
1 TGCTCTCCG-T-TTAGCACGT-TAG
* *
18267194 TGCTCTCCGTTTAGGACGTTTG
1 TGCTCTCCGTTTAGCACGTTAG
* *
18267216 TGCTCTCCGTTTAGCACCTTGG
1 TGCTCTCCGTTTAGCACGTTAG
18267238 TGCTCTCCGTT
1 TGCTCTCCGTT
18267249 CATTTGTGCA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
22 32 0.64
23 8 0.16
24 1 0.02
25 9 0.18
ACGTcount: A:0.10, C:0.28, G:0.24, T:0.39
Consensus pattern (22 bp):
TGCTCTCCGTTTAGCACGTTAG
Found at i:18270475 original size:23 final size:23
Alignment explanation
Indices: 18270448--18270497 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
18270438 AACATGTTCC
* *
18270448 CGAACAAGTTCACGAACGTTAAA
1 CGAACAAGTTCACAAACGCTAAA
* *
18270471 CGAACATGTTCGCAAACGCTAAA
1 CGAACAAGTTCACAAACGCTAAA
18270494 CGAA
1 CGAA
18270498 ACGAACCTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.16
Consensus pattern (23 bp):
CGAACAAGTTCACAAACGCTAAA
Found at i:18271801 original size:41 final size:41
Alignment explanation
Indices: 18271735--18271813 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 41
18271725 TTTTTTTGGG
*
18271735 TGTTTGATTGATGAGAAAATGTAAGAAAATCTGATAAAAATT
1 TGTTTGATTGATGAGAAAATATAAGAAAAT-TGATAAAAATT
*
18271777 TGTTTGA-TGA-GAAGAAAATATAAGAAAATTGGTAAAA
1 TGTTTGATTGATG-AGAAAATATAAGAAAATTGATAAAA
18271814 TAAATAGAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 8 0.24
41 19 0.56
42 7 0.21
ACGTcount: A:0.48, C:0.01, G:0.20, T:0.30
Consensus pattern (41 bp):
TGTTTGATTGATGAGAAAATATAAGAAAATTGATAAAAATT
Found at i:18272090 original size:22 final size:22
Alignment explanation
Indices: 18272062--18272112 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
18272052 AATAATATAT
* *
18272062 TAGCAAATTGGCAGGAAAACAA
1 TAGCAAAGTGGCAGCAAAACAA
* *
18272084 TAGCAAAGTGGTAGCAAAACAG
1 TAGCAAAGTGGCAGCAAAACAA
18272106 TAGCAAA
1 TAGCAAA
18272113 CAACAACAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.24, T:0.14
Consensus pattern (22 bp):
TAGCAAAGTGGCAGCAAAACAA
Found at i:18273848 original size:218 final size:218
Alignment explanation
Indices: 18273467--18274120 Score: 1184
Period size: 218 Copynumber: 3.0 Consensus size: 218
18273457 AGAGCATTGA
*
18273467 CAAACAGAGAAAAGATTGTATGAAACAGGGATGTTATCCCTTTCCAATAGTTTTATGACACATCA
1 CAAACAGAGAAAAGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGACACATCA
*
18273532 ACAATTTCATCCTAAATTTTAGGATTTTAATTGTAATTTGATTTTTTTCAGGATGAAAATGTTGA
66 ACAATTTCATCCTAAATTTCAGGATTTTAATTGTAATTTGATTTTTTTCAGGATGAAAATGTTGA
* * *
18273597 AATTAAGAATAAAAATACTGATGTGGTATAAAACTATTGGAAAAGGGACACAAATGGCGTGGTGT
131 AATTAAGAATGAAAATACTGATGTGGCATAAAACTATTGGAAAAGGGACACAAATGACGTGGTGT
*
18273662 CACTGTTTCATTCAATCTTTTTC
196 CACTGTTTCATTCAATCCTTTTC
*
18273685 CAAACAGAGAAAAGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATAACACATCA
1 CAAACAGAGAAAAGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGACACATCA
*
18273750 ACAATTTCATCCTAAATTTCAGGATTTTAATTGTAATTTGATTTTTTTCAGGATAAAAATGTTGA
66 ACAATTTCATCCTAAATTTCAGGATTTTAATTGTAATTTGATTTTTTTCAGGATGAAAATGTTGA
*
18273815 AATTAAGAATGAAAATACTGATGTGGCATAAAACTATTGGAAAAGGGACACAAATGATGTGGTGT
131 AATTAAGAATGAAAATACTGATGTGGCATAAAACTATTGGAAAAGGGACACAAATGACGTGGTGT
*
18273880 CACTTTTTCATTCAATCCTTTTC
196 CACTGTTTCATTCAATCCTTTTC
*
18273903 CAAACAGAGAAAAGATTGTATGAAACAGGGATATAATCCCTTTCCAATAGTTTTATGACACATCA
1 CAAACAGAGAAAAGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGACACATCA
*
18273968 ATAATTTCATCCTAAATTTCAGGATTTTAATTGTAATTTGA-TTTTTTCAGGATGAAAATGTTGA
66 ACAATTTCATCCTAAATTTCAGGATTTTAATTGTAATTTGATTTTTTTCAGGATGAAAATGTTGA
18274032 AATTAAGAATGAAAATACTGATGTGGCATAAAACTATTGGAAAAGGGACACAAATGACGTGGTGT
131 AATTAAGAATGAAAATACTGATGTGGCATAAAACTATTGGAAAAGGGACACAAATGACGTGGTGT
*
18274097 CACTGTTTCATTCAATCCATTTC
196 CACTGTTTCATTCAATCCTTTTC
18274120 C
1 C
18274121 TTGATAAACA
Statistics
Matches: 419, Mismatches: 17, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
217 108 0.26
218 311 0.74
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (218 bp):
CAAACAGAGAAAAGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGACACATCA
ACAATTTCATCCTAAATTTCAGGATTTTAATTGTAATTTGATTTTTTTCAGGATGAAAATGTTGA
AATTAAGAATGAAAATACTGATGTGGCATAAAACTATTGGAAAAGGGACACAAATGACGTGGTGT
CACTGTTTCATTCAATCCTTTTC
Found at i:18277526 original size:15 final size:15
Alignment explanation
Indices: 18277508--18277536 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
18277498 TAAAGTGCTA
18277508 AAAAATTAAGTATTG
1 AAAAATTAAGTATTG
18277523 AAAAATTAAGTATT
1 AAAAATTAAGTATT
18277537 AAATTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.34
Consensus pattern (15 bp):
AAAAATTAAGTATTG
Found at i:18280183 original size:11 final size:11
Alignment explanation
Indices: 18280156--18280188 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
18280146 TTATTTATTT
*
18280156 ATAAAATAATA
1 ATAAAATAAAA
18280167 AT-AAATAAAA
1 ATAAAATAAAA
18280177 ATAAAATAAAA
1 ATAAAATAAAA
18280188 A
1 A
18280189 AACAAAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:18280940 original size:39 final size:39
Alignment explanation
Indices: 18280897--18281026 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 39
18280887 CCTCTGATTA
* *
18280897 GGGTAAAAGATCTGATGGA-TTCAATCTGCCCCATAGTCG
1 GGGTAAAAGATCTGAT-TACTTCAATCTGCCCCATAGTTG
* * ** * *
18280936 GGGTAAGAGATCTGAACTACTTCAATCTGCCCTTTGGTTA
1 GGGTAAAAGATCTG-ATTACTTCAATCTGCCCCATAGTTG
*
18280976 GGGTAAAAGATTTGAATTACTTCAATCTGCCCCATAGTTG
1 GGGTAAAAGATCTG-ATTACTTCAATCTGCCCCATAGTTG
18281016 GGGTAAAAGAT
1 GGGTAAAAGAT
18281027 TCGAGGTTGT
Statistics
Matches: 74, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
39 14 0.19
40 60 0.81
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (39 bp):
GGGTAAAAGATCTGATTACTTCAATCTGCCCCATAGTTG
Found at i:18281020 original size:40 final size:40
Alignment explanation
Indices: 18280916--18281027 Score: 152
Period size: 40 Copynumber: 2.8 Consensus size: 40
18280906 ATCTGATGGA
* * *
18280916 TTCAATCTGCCCCATAGTCGGGGTAAGAGATCTGAACTAC
1 TTCAATCTGCCCCATAGTTGGGGTAAAAGATTTGAACTAC
** * * *
18280956 TTCAATCTGCCCTTTGGTTAGGGTAAAAGATTTGAATTAC
1 TTCAATCTGCCCCATAGTTGGGGTAAAAGATTTGAACTAC
18280996 TTCAATCTGCCCCATAGTTGGGGTAAAAGATT
1 TTCAATCTGCCCCATAGTTGGGGTAAAAGATT
18281028 CGAGGTTGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (40 bp):
TTCAATCTGCCCCATAGTTGGGGTAAAAGATTTGAACTAC
Found at i:18281149 original size:50 final size:50
Alignment explanation
Indices: 18281064--18281225 Score: 173
Period size: 50 Copynumber: 3.2 Consensus size: 50
18281054 CTTCAAGAGT
* * * * *
18281064 ATAAGATTCGTCCTTGTGACTTCAATCTTCCCCTCTACAACTTTAGGTGA
1 ATAAGATTTGTCATTGCGACTTCAATCTACCCCTCTACAGCTTTAGGTGA
* * *
18281114 ATAAGATTTGTCATTGCGACGTCATTCTACCCCTCTACAGCTTTAGGTGT
1 ATAAGATTTGTCATTGCGACTTCAATCTACCCCTCTACAGCTTTAGGTGA
* * ** * * *
18281164 ATGAGATTTGCCATTGCGGTTTCAATCTACACCTCCACAGCTTTAGGGGTA
1 ATAAGATTTGTCATTGCGACTTCAATCTACCCCTCTACAGCTTTAGGTG-A
18281215 A-AAGATTTGTC
1 ATAAGATTTGTC
18281226 GTTCTATCGC
Statistics
Matches: 91, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
50 90 0.99
51 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (50 bp):
ATAAGATTTGTCATTGCGACTTCAATCTACCCCTCTACAGCTTTAGGTGA
Found at i:18281426 original size:10 final size:10
Alignment explanation
Indices: 18281411--18281436 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
18281401 AGTCCTTAGG
18281411 TCGTCACTGA
1 TCGTCACTGA
18281421 TCGTCACTGA
1 TCGTCACTGA
18281431 TCGTCA
1 TCGTCA
18281437 TTTGCCTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.31
Consensus pattern (10 bp):
TCGTCACTGA
Found at i:18292612 original size:51 final size:51
Alignment explanation
Indices: 18292536--18292908 Score: 509
Period size: 51 Copynumber: 7.3 Consensus size: 51
18292526 GCTATAAACG
* * *
18292536 AAAGGTCCGATGACTAAGTATCATCGTGAGTAAATGAATCCTTTACAGATT
1 AAAGGTCCGATGACAAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* *
18292587 AAAGGTCCGGTGACAAAGTGTCATCGTGAGTAAATGAATCTTTTACGGATT
1 AAAGGTCCGATGACAAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * *
18292638 AAAGGTCCGATGACTAAGTGTTATCATGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACAAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* *
18292689 AAAGGTCC-AGTGACTAAGTGTCATCGTGAGTAAATAAATCCTTTACGGATT
1 AAAGGTCCGA-TGACAAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
*
18292740 AAAGGTTCGATGACTAAA-TGTCATCGTGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGAC-AAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * **
18292791 AAAGGTCTGATGACTAAA-TGTCATCGTAAGTAAATGAATCATTTAATGATT
1 AAAGGTCCGATGAC-AAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * * *
18292842 AAAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCATGACGAATT
1 AAAGGTCCGATGACAAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
18292893 AAAGGTCCGATGACAA
1 AAAGGTCCGATGACAA
18292909 TATGTCTACG
Statistics
Matches: 285, Mismatches: 33, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
50 3 0.01
51 279 0.98
52 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.29
Consensus pattern (51 bp):
AAAGGTCCGATGACAAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
Found at i:18296786 original size:16 final size:15
Alignment explanation
Indices: 18296748--18296794 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 15
18296738 TGGGTTTGTA
*
18296748 TTTTATTTTTTTAATT
1 TTTTATTTATTT-ATT
18296764 TTATTATTTATTTATT
1 TT-TTATTTATTTATT
18296780 TGTTTATTTATTTAT
1 T-TTTATTTATTTAT
18296795 AAAATAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 18 0.64
17 10 0.36
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTATTTATTTATT
Found at i:18296816 original size:16 final size:16
Alignment explanation
Indices: 18296795--18296836 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
18296785 ATTTATTTAT
18296795 AAAATAATAAT-AAATA
1 AAAATAA-AATAAAATA
*
18296811 AAAATAAAGTAAAATA
1 AAAATAAAATAAAATA
*
18296827 AAAACAAAAT
1 AAAATAAAAT
18296837 TGGATTGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 2 0.09
16 20 0.91
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:18298569 original size:42 final size:41
Alignment explanation
Indices: 18298418--18298850 Score: 245
Period size: 41 Copynumber: 10.3 Consensus size: 41
18298408 AGCGGCATTT
* * ***
18298418 TTAGCGGCG-TTTGGACACAAAGCGCCGCAAAAGGTAAAG-CA
1 TTAGCGGCGCTTT--ACCCAAAGCGCCGCTAAAGGTCGGGTCA
* * * * ***
18298459 TTAGCGGCGCTTTTCCTAATGCGCCGCAAAAGGT-AAATCA
1 TTAGCGGCGCTTTACCCAAAGCGCCGCTAAAGGTCGGGTCA
* *
18298499 TTAGCGGCGC-TTACACAAAGCGCCGCTAAAGGTCGGGTCT
1 TTAGCGGCGCTTTACCCAAAGCGCCGCTAAAGGTCGGGTCA
**
18298539 TTAGCGGCGCTTTACCCACAAGCGCCGCTAAAGGTCGACTCA
1 TTAGCGGCGCTTTACCCA-AAGCGCCGCTAAAGGTCGGGTCA
* * * * *
18298581 TTAGCGGCGC-TTAGACAAAAGCGCCACTAAAAGTCAGGTCA
1 TTAGCGGCGCTTTA-CCCAAAGCGCCGCTAAAGGTCGGGTCA
* * * *
18298622 TTAGCGGCTGGATAGTGGCGCTTATCCAGAAGCGCCGCTAATGGTCTGGTCA
1 TTAGCGGC---------GC-TTTACCCA-AAGCGCCGCTAAAGGTCGGGTCA
* * *
18298674 TTAGCGGCGCTTCACCAAAAGCGCCGCTAAAAGT-GGAGTCA
1 TTAGCGGCGCTTTACCCAAAGCGCCGCTAAAGGTCGG-GTCA
* **
18298715 TTAGCGGCGC-TTACCCACAAACGCCGCTAAAGGTCGTATCA
1 TTAGCGGCGCTTTACCCA-AAGCGCCGCTAAAGGTCGGGTCA
* *** * * *
18298756 TTAGCGACGCTTATATAGAAAGCGCCGGTAAAGGTCAGGTTA
1 TTAGCGGCGCTT-TACCCAAAGCGCCGCTAAAGGTCGGGTCA
* * ** *
18298798 TTAGAGGCGCTTTTCTAATAAGCGCCGCTAAAGGT-GTG-CA
1 TTAGCGGCGCTTTACCCA-AAGCGCCGCTAAAGGTCGGGTCA
18298838 TTAGCGGCGCTTT
1 TTAGCGGCGCTTT
18298851 TATATAAGCG
Statistics
Matches: 303, Mismatches: 65, Indels: 49
0.73 0.16 0.12
Matches are distributed among these distances:
39 20 0.07
40 60 0.20
41 101 0.33
42 83 0.27
43 5 0.02
50 2 0.01
51 2 0.01
52 30 0.10
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (41 bp):
TTAGCGGCGCTTTACCCAAAGCGCCGCTAAAGGTCGGGTCA
Found at i:18298599 original size:82 final size:81
Alignment explanation
Indices: 18298434--18298867 Score: 308
Period size: 93 Copynumber: 5.2 Consensus size: 81
18298424 GCGTTTGGAC
* * * * * * **
18298434 ACAAAGCGCCGC-AAAAGGTAAAG-CATTAGCGGCGCTTTTCCTA-ATGCGCCGCAAAAGGTAAA
1 ACAAAGCGCCGCTAAAA-GTCAGGTCATTAGCGGCGCTTTACCCACAAGCGCCGCTAAAGGTCGA
*
18298496 TCATTAGCGGCGCTTAC
65 TCATTAGCGGCGCTTAT
* * *
18298513 ACAAAGCGCCGCTAAAGGTCGGGTCTTTAGCGGCGCTTTACCCACAAGCGCCGCTAAAGGTCGAC
1 ACAAAGCGCCGCTAAAAGTCAGGTCATTAGCGGCGCTTTACCCACAAGCGCCGCTAAAGGTCGA-
*
18298578 TCATTAGCGGCGCTTAG
65 TCATTAGCGGCGCTTAT
* * * *
18298595 ACAAAAGCGCCACTAAAAGTCAGGTCATTAGCGGCTGGATAGTGGCGCTTATCCAGAAGCGCCGC
1 AC-AAAGCGCCGCTAAAAGTCAGGTCATTAGCGGC---------GC-TTTACCCACAAGCGCCGC
* *
18298660 TAATGGTCTGGTCATTAGCGGCGCTTCA-
55 TAAAGGTC-GATCATTAGCGGCGCTT-AT
* * *
18298688 CCAAAAGCGCCGCTAAAAGT-GGAGTCATTAGCGGCGC-TTACCCACAAACGCCGCTAAAGGTCG
1 AC-AAAGCGCCGCTAAAAGTCAG-GTCATTAGCGGCGCTTTACCCACAAGCGCCGCTAAAGGTCG
*
18298751 TATCATTAGCGACGCTTATAT
64 -ATCATTAGCGGCGC-T-TAT
* * * * * * ** *
18298772 AGAAAGCGCCGGTAAAGGTCAGGTTATTAGAGGCGCTTTTCTAATAAGCGCCGCTAAAGGT-G-T
1 ACAAAGCGCCGCTAAAAGTCAGGTCATTAGCGGCGCTTTACCCACAAGCGCCGCTAAAGGTCGAT
*
18298835 GCATTAGCGGCGCTTTT
66 -CATTAGCGGCGCTTAT
*
18298852 ATATAAGCGCCGCTAA
1 ACA-AAGCGCCGCTAA
18298868 TATATTTAAA
Statistics
Matches: 283, Mismatches: 46, Indels: 50
0.75 0.12 0.13
Matches are distributed among these distances:
79 15 0.05
80 24 0.08
81 29 0.10
82 62 0.22
83 58 0.20
84 23 0.08
92 3 0.01
93 67 0.24
94 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.21
Consensus pattern (81 bp):
ACAAAGCGCCGCTAAAAGTCAGGTCATTAGCGGCGCTTTACCCACAAGCGCCGCTAAAGGTCGAT
CATTAGCGGCGCTTAT
Found at i:18298745 original size:134 final size:134
Alignment explanation
Indices: 18298504--18298745 Score: 337
Period size: 134 Copynumber: 1.8 Consensus size: 134
18298494 AATCATTAGC
* * *
18298504 GGCGCTTACACAAAGCGCCGCTAAAGGTCGGGTCTTTAGCGGCGCTTTACCCACAAGCGCCGCTA
1 GGCGCTTACACAAAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTCACCCAAAAGCGCCGCTA
* *
18298569 AAGGTCGACTCATTAGCGGCGCTTAGACAAAAGCGCCACTAAAAGTCAGGTCATTAGCGGCTGGA
66 AAAGTCGACTCATTAGCGGCGCTTACACAAAAGCGCCACTAAAAGTCAGGTCATTAGCGGCTGGA
18298634 TAGT
131 TAGT
* *
18298638 GGCGCTTATC-CAGAAGCGCCGCTAATGGTCTGGTCATTAGCGGCGCTTCA-CCAAAAGCGCCGC
1 GGCGCTTA-CACA-AAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTCACCCAAAAGCGCCGC
* * * *
18298701 TAAAAGTGGAGTCATTAGCGGCGCTTACCCACAAA-CGCCGCTAAA
64 TAAAAGTCGACTCATTAGCGGCGCTTACACA-AAAGCGCCACTAAA
18298746 GGTCGTATCA
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
134 57 0.61
135 37 0.39
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (134 bp):
GGCGCTTACACAAAGCGCCGCTAAAGGTCGGGTCATTAGCGGCGCTTCACCCAAAAGCGCCGCTA
AAAGTCGACTCATTAGCGGCGCTTACACAAAAGCGCCACTAAAAGTCAGGTCATTAGCGGCTGGA
TAGT
Found at i:18299008 original size:26 final size:25
Alignment explanation
Indices: 18298960--18299024 Score: 96
Period size: 26 Copynumber: 2.6 Consensus size: 25
18298950 TCTGCATGCA
*
18298960 TCACCCCCAAATCACAGAACCCTCT
1 TCACCCCCAAATCGCAGAACCCTCT
18298985 TCACCCCCAAATCGCA-ATACCCCTCT
1 TCACCCCCAAATCGCAGA-A-CCCTCT
18299011 TCACCCCCAAATCG
1 TCACCCCCAAATCG
18299025 TTGAGCCCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
24 1 0.03
25 16 0.43
26 20 0.54
ACGTcount: A:0.29, C:0.49, G:0.05, T:0.17
Consensus pattern (25 bp):
TCACCCCCAAATCGCAGAACCCTCT
Found at i:18299033 original size:25 final size:25
Alignment explanation
Indices: 18298960--18299036 Score: 77
Period size: 25 Copynumber: 3.0 Consensus size: 25
18298950 TCTGCATGCA
*
18298960 TCACCCCCAAATC-ACAGAACCCTCT
1 TCACCCCCAAATCGA-TGAACCCTCT
*
18298985 TCACCCCCAAATCGCAAT-ACCCCTCT
1 TCACCCCCAAATCG--ATGAACCCTCT
* *
18299011 TCACCCCCAAATCGTTGAGCCCTCT
1 TCACCCCCAAATCGATGAACCCTCT
18299036 T
1 T
18299037 TTATTTCCCT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
24 1 0.02
25 21 0.48
26 21 0.48
28 1 0.02
ACGTcount: A:0.26, C:0.47, G:0.06, T:0.21
Consensus pattern (25 bp):
TCACCCCCAAATCGATGAACCCTCT
Found at i:18299107 original size:44 final size:43
Alignment explanation
Indices: 18299051--18299169 Score: 121
Period size: 44 Copynumber: 2.7 Consensus size: 43
18299041 TTCCCTCAGT
* * *
18299051 CCGTTGCCTCTTCACCTGCAAAACCCACTTCTGTTCGCCTCACC
1 CCGTTCCCTCTTCACCT-CAAAACCCACTTCTCTTCCCCTCACC
** *
18299095 CCGTTCCCTCTTCACCCTCAAAACCGGCTTCTCTTCCCCTCACT
1 CCGTTCCCTCTTCA-CCTCAAAACCCACTTCTCTTCCCCTCACC
** * * *
18299139 CCGTTCGGTCTTCACCCCAGAACCCGCTTCT
1 CCGTTCCCTCTTCACCTCAAAACCCACTTCT
18299170 TCAGCAGATC
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
43 14 0.22
44 46 0.73
45 3 0.05
ACGTcount: A:0.14, C:0.47, G:0.11, T:0.28
Consensus pattern (43 bp):
CCGTTCCCTCTTCACCTCAAAACCCACTTCTCTTCCCCTCACC
Found at i:18301043 original size:8 final size:9
Alignment explanation
Indices: 18301030--18301340 Score: 83
Period size: 8 Copynumber: 36.3 Consensus size: 9
18301020 ATATATGTTC
18301030 TAATTAT-T
1 TAATTATAT
18301038 TAATTATAT
1 TAATTATAT
* *
18301047 TAAAGTA-AA
1 T-AATTATAT
18301056 TAATTATAT
1 TAATTATAT
18301065 TGAATTAAATATT
1 T-AATT--ATA-T
18301078 TAATTAT-T
1 TAATTATAT
18301086 TAATTATAT
1 TAATTATAT
** * *
18301095 TAAAGAGAA
1 TAATTATAT
18301104 TAATTATAT
1 TAATTATAT
18301113 TAAATTAAATATT
1 T-AATT--ATA-T
18301126 TAATTAT-T
1 TAATTATAT
18301134 TAATTATAT
1 TAATTATAT
* *
18301143 TAAAGTA-AA
1 T-AATTATAT
18301152 TAATTATAT
1 TAATTATAT
18301161 TAAGTTA-A-
1 TAA-TTATAT
*
18301169 -AA-GAT-T
1 TAATTATAT
18301175 TAATTAT-T
1 TAATTATAT
18301183 TAATTATAT
1 TAATTATAT
* *
18301192 TAAAGTA-AA
1 T-AATTATAT
18301201 TAATTATAT
1 TAATTATAT
18301210 TAAGTTA-A-
1 TAA-TTATAT
*
18301218 -AA-GAT-T
1 TAATTATAT
18301224 TAATTAT-T
1 TAATTATAT
*
18301232 TAATTATGT
1 TAATTATAT
* *
18301241 TAAAGTA-AA
1 T-AATTATAT
18301250 TAATTATAT
1 TAATTATAT
18301259 TAATT-TA-
1 TAATTATAT
*
18301266 -AA-GAT-T
1 TAATTATAT
18301272 TAATTAT-T
1 TAATTATAT
18301280 TAATTATAT
1 TAATTATAT
* *
18301289 TAAAGTA-AA
1 T-AATTATAT
18301298 TAATTATAT
1 TAATTATAT
18301307 TAAGTTA-A-
1 TAA-TTATAT
*
18301315 -AA-GAT-T
1 TAATTATAT
18301321 TAATTAT-T
1 TAATTATAT
18301329 TAATTATAT
1 TAATTATAT
18301338 TAA
1 TAA
18301341 AGTAAATAAT
Statistics
Matches: 222, Mismatches: 37, Indels: 87
0.64 0.11 0.25
Matches are distributed among these distances:
5 3 0.01
6 3 0.01
7 14 0.06
8 85 0.38
9 58 0.26
10 41 0.18
12 14 0.06
13 4 0.02
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (9 bp):
TAATTATAT
Found at i:18301195 original size:49 final size:49
Alignment explanation
Indices: 18301030--18301487 Score: 734
Period size: 49 Copynumber: 9.4 Consensus size: 49
18301020 ATATATGTTC
*
18301030 TAATTATTTAATTATATTAAAGTAAATAATTATATTGAA-TT-AAATATT
1 TAATTATTTAATTATATTAAAGTAAATAATTATATT-AAGTTAAAAGATT
* *
18301078 TAATTATTTAATTATATTAAAG-AGAATAATTATATTAAATT-AAATATT
1 TAATTATTTAATTATATTAAAGTA-AATAATTATATTAAGTTAAAAGATT
18301126 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATT
1 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATT
18301175 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATT
1 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATT
* *
18301224 TAATTATTTAATTATGTTAAAGTAAATAATTATATTAA-TTTAAAGATT
1 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATT
18301272 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATT
1 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATT
*
18301321 TAATTATTTAATTATATTAAAGTAAATAATTATATGAAAG-T-AAAGATT
1 TAATTATTTAATTATATTAAAGTAAATAATTATAT-TAAGTTAAAAGATT
* *
18301369 TAATTACTAAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATT
1 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATT
*
18301418 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAATATT
1 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATT
18301467 TAATTATATTTAATTAT-TTAA
1 TAA-T-TATTTAATTATATTAA
18301488 TTAATAAAAA
Statistics
Matches: 387, Mismatches: 13, Indels: 18
0.93 0.03 0.04
Matches are distributed among these distances:
47 6 0.02
48 168 0.43
49 194 0.50
50 8 0.02
51 11 0.03
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (49 bp):
TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATT
Found at i:18301257 original size:146 final size:145
Alignment explanation
Indices: 18301030--18301487 Score: 744
Period size: 146 Copynumber: 3.1 Consensus size: 145
18301020 ATATATGTTC
*
18301030 TAATTATTTAATTATATTAAAGTAAATAATTATATTGAA-TTAAATATTTAATTATTTAATTATA
1 TAATTATTTAATTATATTAAAGTAAATAATTATATT-AAGTTAAAGATTTAATTATTTAATTATA
*
18301094 TTAAAG-AGAATAATTATATTAAATTAAATATTTAATTATTTAATTATATTAAAGTAAATAATTA
65 TTAAAGTA-AATAATTATATTAAATTAAAGATTTAATTATTTAATTATATTAAAGTAAATAATTA
18301158 TATTAAGTTAAAAGATT
129 TATTAAGTTAAAAGATT
*
18301175 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTATG
1 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTT-AAAGATTTAATTATTTAATTATA
*
18301240 TTAAAGTAAATAATTATATTAATTTAAAGATTTAATTATTTAATTATATTAAAGTAAATAATTAT
65 TTAAAGTAAATAATTATATTAAATTAAAGATTTAATTATTTAATTATATTAAAGTAAATAATTAT
18301305 ATTAAGTTAAAAGATT
130 ATTAAGTTAAAAGATT
* * *
18301321 TAATTATTTAATTATATTAAAGTAAATAATTATATGAAAG-TAAAGATTTAATTACTAAATTATA
1 TAATTATTTAATTATATTAAAGTAAATAATTATAT-TAAGTTAAAGATTTAATTATTTAATTATA
*
18301385 TTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTATATTAAAGTAAATAATTA
65 TTAAAGTAAATAATTATATTAAATT-AAAGATTTAATTATTTAATTATATTAAAGTAAATAATTA
*
18301450 TATTAAGTTAAAATATT
129 TATTAAGTTAAAAGATT
18301467 TAATTATATTTAATTAT-TTAA
1 TAA-T-TATTTAATTATATTAA
18301488 TTAATAAAAA
Statistics
Matches: 296, Mismatches: 10, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
144 2 0.01
145 82 0.28
146 192 0.65
147 9 0.03
148 11 0.04
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (145 bp):
TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAGATTTAATTATTTAATTATAT
TAAAGTAAATAATTATATTAAATTAAAGATTTAATTATTTAATTATATTAAAGTAAATAATTATA
TTAAGTTAAAAGATT
Found at i:18301472 original size:18 final size:17
Alignment explanation
Indices: 18301441--18301496 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
18301431 ATATTAAAGT
*
18301441 AAATAATTATATTAAGTTA
1 AAATATTTA-ATTAA-TTA
*
18301460 AAATATTTAATTATATTT
1 AAATATTTAATTA-ATTA
*
18301478 AATTATTTAATTAA-TA
1 AAATATTTAATTAATTA
18301494 AAA
1 AAA
18301497 ACAGCCCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
16 3 0.10
17 1 0.03
18 18 0.58
19 9 0.29
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
AAATATTTAATTAATTA
Found at i:18301494 original size:97 final size:97
Alignment explanation
Indices: 18301030--18301487 Score: 737
Period size: 97 Copynumber: 4.7 Consensus size: 97
18301020 ATATATGTTC
*
18301030 TAATTATTTAATTATATTAAAGTAAATAATTATATTGAA-TTAAATATTTAATTATTTAATTATA
1 TAATTATTTAATTATATTAAAGTAAATAATTATATT-AAGTTAAAGATTTAATTATTTAATTATA
* *
18301094 TTAAAG-AGAATAATTATATTAAATT-AAATATT
65 TTAAAGTA-AATAATTATATTAAGTTAAAAGATT
18301126 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTATA
1 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTT-AAAGATTTAATTATTTAATTATA
18301191 TTAAAGTAAATAATTATATTAAGTTAAAAGATT
65 TTAAAGTAAATAATTATATTAAGTTAAAAGATT
* *
18301224 TAATTATTTAATTATGTTAAAGTAAATAATTATATTAATTTAAAGATTTAATTATTTAATTATAT
1 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAGATTTAATTATTTAATTATAT
18301289 TAAAGTAAATAATTATATTAAGTTAAAAGATT
66 TAAAGTAAATAATTATATTAAGTTAAAAGATT
* * *
18301321 TAATTATTTAATTATATTAAAGTAAATAATTATATGAAAG-TAAAGATTTAATTACTAAATTATA
1 TAATTATTTAATTATATTAAAGTAAATAATTATAT-TAAGTTAAAGATTTAATTATTTAATTATA
18301385 TTAAAGTAAATAATTATATTAAGTTAAAAGATT
65 TTAAAGTAAATAATTATATTAAGTTAAAAGATT
*
18301418 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAATATTTAATTATATTTAATTA
1 TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTT-AAAGATTTAA-T-TATTTAATTA
18301483 T-TTAA
63 TATTAA
18301488 TTAATAAAAA
Statistics
Matches: 339, Mismatches: 14, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
95 2 0.01
96 41 0.12
97 225 0.66
98 57 0.17
99 5 0.01
100 9 0.03
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (97 bp):
TAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAGATTTAATTATTTAATTATAT
TAAAGTAAATAATTATATTAAGTTAAAAGATT
Found at i:18307106 original size:66 final size:66
Alignment explanation
Indices: 18307000--18307156 Score: 217
Period size: 66 Copynumber: 2.4 Consensus size: 66
18306990 CAAATTGCTC
* *
18307000 AACTTAAAGAGGAGGCTGCAACGAGAGAAGCAGAGGCTCAAAAAAAATATGATGAACTCCATC-T
1 AACTTAAAGAGGAGGCTGCAACGAGAGAAGCAGAGCCTCAAAAAAAATATGAAGAACTCCA-CAT
18307064 AA
65 AA
* **
18307066 AACTTAAAGAGGAGGTTGCATTGAGAGAAGCAGAGCCTCAAAAAAAATATGAAGAACTCCACATA
1 AACTTAAAGAGGAGGCTGCAACGAGAGAAGCAGAGCCTCAAAAAAAATATGAAGAACTCCACATA
*
18307131 C
66 A
* * *
18307132 AACTTAAAGTGGAGGCAGCAGCGAG
1 AACTTAAAGAGGAGGCTGCAACGAG
18307157 GCAAGCGGAG
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
65 1 0.01
66 78 0.99
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.15
Consensus pattern (66 bp):
AACTTAAAGAGGAGGCTGCAACGAGAGAAGCAGAGCCTCAAAAAAAATATGAAGAACTCCACATA
A
Found at i:18307168 original size:21 final size:21
Alignment explanation
Indices: 18307142--18307193 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
18307132 AACTTAAAGT
18307142 GGAGGCAGCAGCGAGGCAAGC
1 GGAGGCAGCAGCGAGGCAAGC
*
18307163 GGAGGCAGCAGCTAGGCAAGC
1 GGAGGCAGCAGCGAGGCAAGC
* *
18307184 GAAGGAAGCA
1 GGAGGCAGCA
18307194 AAGGCTACAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.44, T:0.02
Consensus pattern (21 bp):
GGAGGCAGCAGCGAGGCAAGC
Found at i:18307567 original size:43 final size:43
Alignment explanation
Indices: 18307509--18307675 Score: 298
Period size: 43 Copynumber: 3.9 Consensus size: 43
18307499 GCGCTTTATC
*
18307509 AAAAGCGCCGTTAAAGAACATGGCCTTCAGCGGCGCTTGTGGA
1 AAAAGCGCCGCTAAAGAACATGGCCTTCAGCGGCGCTTGTGGA
18307552 AAAAGCGCCGCTAAAGAACATGGCCTTCAGCGGCGCTTGTGGA
1 AAAAGCGCCGCTAAAGAACATGGCCTTCAGCGGCGCTTGTGGA
* *
18307595 AAAAGCACCGCTAAAGTACATGGCCTTCAGCGGCGCTTGTGGA
1 AAAAGCGCCGCTAAAGAACATGGCCTTCAGCGGCGCTTGTGGA
*
18307638 AAAAGCGCCGCTAAAGTACATGGCCTTCAGCGGCGCTT
1 AAAAGCGCCGCTAAAGAACATGGCCTTCAGCGGCGCTT
18307676 TTTCGCATAA
Statistics
Matches: 120, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 120 1.00
ACGTcount: A:0.28, C:0.26, G:0.29, T:0.18
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGAACATGGCCTTCAGCGGCGCTTGTGGA
Found at i:18317324 original size:12 final size:12
Alignment explanation
Indices: 18317307--18317337 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
18317297 AGTAATATTC
*
18317307 ATAAATTATAAA
1 ATAAATAATAAA
18317319 ATAAATAATAAA
1 ATAAATAATAAA
18317331 ATAAATA
1 ATAAATA
18317338 TTTGATTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
ATAAATAATAAA
Found at i:18319350 original size:21 final size:21
Alignment explanation
Indices: 18319296--18319372 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 21
18319286 GATAGTGCAG
*
18319296 ACTTCTACCGATACAAGCGAC
1 ACTTCTACCGATACAAGTGAC
* *
18319317 AGTTTTACCGATACAAGTGAC
1 ACTTCTACCGATACAAGTGAC
* * * ***
18319338 TCTTCTACTGATATAAGTCTT
1 ACTTCTACCGATACAAGTGAC
18319359 ACTTCTACCGATAC
1 ACTTCTACCGATAC
18319373 TAAAAACTTC
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (21 bp):
ACTTCTACCGATACAAGTGAC
Found at i:18320393 original size:191 final size:191
Alignment explanation
Indices: 18320068--18320507 Score: 621
Period size: 191 Copynumber: 2.3 Consensus size: 191
18320058 TACCAGTACC
* * * * * * * * *
18320068 CGATGCTGCTCACACGAGCTGTCAAGGATTTGTAACATATGCAGTACCTCAGCCATCAGTATGGT
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGTAACATATGCGGTACCCCAACTATCGGTACGGT
* * * * * *
18320133 GTCTGTCTGTAAACTGTTCCCTAACGATGCTGCTCACACGAGCTGTCGGGAGTATGCATAAAGCA
66 GTCTGTATATAAACTGTTCCCTAACAATGCTGCTCACACGAGCTGTCGAGAGTATACATAAAACA
* *
18320198 TAAGTCCCAGCCATCGAAAGGTC-TACAATTCATTTAGGATTCATATCTCTTTTTCGAATCA
131 TAAGTCCCAGCCATC-AAAGGGCTTACAATTCATTTAGGATTCATATCTCTTTTTCAAATCA
*
18320259 CGATGCTGCTCACACGAGCTGTCGAGGACTCGTAACATATACGGTACCCCAACTATCGGTACGGT
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGTAACATATGCGGTACCCCAACTATCGGTACGGT
* *
18320324 GTCTGTATATAAATTGTTCCCTAACAATGCTGCTCACACGAGCTGTTGAGAGTATACATAAAACA
66 GTCTGTATATAAACTGTTCCCTAACAATGCTGCTCACACGAGCTGTCGAGAGTATACATAAAACA
* * *
18320389 TAAGTCCGAGCCATCAAAGGGCTTATAATTCATTTATGATTCATATCTCTTTTTCAAATCA
131 TAAGTCCCAGCCATCAAAGGGCTTACAATTCATTTAGGATTCATATCTCTTTTTCAAATCA
* * * *
18320450 CGATGCTACTCACATGAGCTGTCGAGGACTCGCAACATATGTGGTACCCCAACTATCG
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGTAACATATGCGGTACCCCAACTATCG
18320508 CGTCAGTACT
Statistics
Matches: 220, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
190 6 0.03
191 214 0.97
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (191 bp):
CGATGCTGCTCACACGAGCTGTCGAGGACTCGTAACATATGCGGTACCCCAACTATCGGTACGGT
GTCTGTATATAAACTGTTCCCTAACAATGCTGCTCACACGAGCTGTCGAGAGTATACATAAAACA
TAAGTCCCAGCCATCAAAGGGCTTACAATTCATTTAGGATTCATATCTCTTTTTCAAATCA
Found at i:18328360 original size:15 final size:15
Alignment explanation
Indices: 18328305--18328361 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
18328295 TTTATACTAC
*
18328305 AAAATATTTGTTATT
1 AAAATATTTATTATT
* *
18328320 AATATATTTATAATTGT
1 AAAATATTTATTA-T-T
18328337 AATAAATATTTATTATT
1 -A-AAATATTTATTATT
18328354 AAAATATT
1 AAAATATT
18328362 AATATTGAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 17 0.52
16 2 0.06
17 2 0.06
18 2 0.06
19 10 0.30
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.51
Consensus pattern (15 bp):
AAAATATTTATTATT
Found at i:18328431 original size:13 final size:14
Alignment explanation
Indices: 18328393--18328434 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
18328383 TATGTGAAGA
18328393 ATATTATTTAAAATT
1 ATATTA-TTAAAATT
*
18328408 ATCATTTTTAAAATT
1 AT-ATTATTAAAATT
18328423 -TATTATTAAAAT
1 ATATTATTAAAAT
18328435 AAAATTGACA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 10 0.42
16 3 0.12
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (14 bp):
ATATTATTAAAATT
Found at i:18329935 original size:42 final size:42
Alignment explanation
Indices: 18329883--18329964 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
18329873 ACTTTAAAAT
* *
18329883 TGTTAAGAAGTAAAATATTTAAAATTTGTATATTTGTTCATA
1 TGTTAAGAAGTAAAATATTCAAAATTTGCATATTTGTTCATA
* *
18329925 TGTTAGGAAGTAAAATGTTCAAAATTTGCATATTTGTTCA
1 TGTTAAGAAGTAAAATATTCAAAATTTGCATATTTGTTCA
18329965 GTGAAAATTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.43
Consensus pattern (42 bp):
TGTTAAGAAGTAAAATATTCAAAATTTGCATATTTGTTCATA
Found at i:18330821 original size:164 final size:165
Alignment explanation
Indices: 18330533--18330862 Score: 495
Period size: 164 Copynumber: 2.0 Consensus size: 165
18330523 ATAAATCGAC
* * *
18330533 AAAAAAATCGAACATCCACCAAATTAGAGGGGACGACGACAAAACCATCCCTAAAATCACTTGTA
1 AAAAAAATCGAACATCCACCAAACTAGAGAGGACGACGACAAAACCATCCCTAAAATCACATGTA
* * **
18330598 AAAAACAAGACTACATGCATAAGCAAGACTAAAAAACATATTACAAGAATAGGCAAATTAAGCAA
66 AAAAACAAGACTACATACATAAGCAAGACTAAAAAACATACTACAAGAATAAACAAATTAAGCAA
* *
18330663 AACAGGAACCCGAGCATATATGGAATGACCATTTGT
131 AACA-GAACCCAAACATATATGGAATGACCATTTGT
* *
18330699 AAAAGAATC-AACATCCACCAAACTAGAGAGGACGATGACAAAACCGA-CCCTAAAATCACATGT
1 AAAAAAATCGAACATCCACCAAACTAGAGAGGACGACGACAAAACC-ATCCCTAAAATCACATGT
** *
18330762 -AAAAGTAAGACTACATACATAAGCAAGATTAAAAAACATACTACAAGAATAAACAAATTAAGCA
65 AAAAAACAAGACTACATACATAAGCAAGACTAAAAAACATACTACAAGAATAAACAAATTAAGCA
18330826 AAACAGAACCCAAACATATATGGAATGACCATTTGT
130 AAACAGAACCCAAACATATATGGAATGACCATTTGT
18330862 A
1 A
18330863 TAGTTTATCT
Statistics
Matches: 149, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
163 30 0.20
164 62 0.42
165 48 0.32
166 9 0.06
ACGTcount: A:0.50, C:0.20, G:0.14, T:0.17
Consensus pattern (165 bp):
AAAAAAATCGAACATCCACCAAACTAGAGAGGACGACGACAAAACCATCCCTAAAATCACATGTA
AAAAACAAGACTACATACATAAGCAAGACTAAAAAACATACTACAAGAATAAACAAATTAAGCAA
AACAGAACCCAAACATATATGGAATGACCATTTGT
Found at i:18332910 original size:29 final size:33
Alignment explanation
Indices: 18332878--18332939 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 33
18332868 TGTTTTCGAT
18332878 AAAAATT-AAAT-CAATTTT-TTATA-ATTTTA
1 AAAAATTAAAATACAATTTTGTTATATATTTTA
*
18332907 AAAAATTAAAATATAATTTTGTTATATATTTTA
1 AAAAATTAAAATACAATTTTGTTATATATTTTA
18332940 TAAATTATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 7 0.25
30 4 0.14
31 6 0.21
32 5 0.18
33 6 0.21
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (33 bp):
AAAAATTAAAATACAATTTTGTTATATATTTTA
Found at i:18337686 original size:29 final size:30
Alignment explanation
Indices: 18337649--18337721 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 30
18337639 CATATAACAT
*
18337649 AGACA-AAACACACAGTA-AATATGTAGCAC
1 AGACAGAAACACACA-TATAACATGTAGCAC
*
18337678 -GATAGAAACACAC-TATAACATGTAGCAC
1 AGACAGAAACACACATATAACATGTAGCAC
*
18337706 AGACAGAGACACACAT
1 AGACAGAAACACACAT
18337722 CTAGCGATAG
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
27 2 0.06
28 14 0.39
29 19 0.53
30 1 0.03
ACGTcount: A:0.49, C:0.22, G:0.15, T:0.14
Consensus pattern (30 bp):
AGACAGAAACACACATATAACATGTAGCAC
Found at i:18341054 original size:21 final size:22
Alignment explanation
Indices: 18341030--18341078 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
18341020 GACTTGTTTC
18341030 GGTAGAAAAGTCACTTATAT-A
1 GGTAGAAAAGTCACTTATATCA
**
18341051 GGTAGAACTGTCACTTATATCA
1 GGTAGAAAAGTCACTTATATCA
18341073 -GTAGAA
1 GGTAGAA
18341079 GTCTGCACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (22 bp):
GGTAGAAAAGTCACTTATATCA
Found at i:18346127 original size:225 final size:226
Alignment explanation
Indices: 18345735--18346185 Score: 877
Period size: 225 Copynumber: 2.0 Consensus size: 226
18345725 GTATTTCCAT
18345735 ACGAGAAACTATTCTTTTTCGACACATCTCCATGGTATGCAGATGTCGTCAATTATTTAGTCTGT
1 ACGAGAAACTATTCTTTTTCGACACATCTCCATGGTATGCAGATGTCGTCAATTATTTAGTCTGT
*
18345800 AAAAATTTTTCGTTGAGTGTAACTAGTCATTGAAAGGTCAGATTTCTTCGAGATGCTGCGAAGTA
66 AAAAATTTTCCGTTGAGTGTAACTAGTCATTGAAAGGTCAGATTTCTTCGAGATGCTGCGAAGTA
18345865 CCATTGGAATGAGCCATACCTGTTCAAGGTATGCGCTGATAATATTATTCGTCATTGCGTTCCTG
131 CCATTGGAATGAGCCATACCTGTTCAAGGTATGCGCTGATAATATTATTCGTCATTGCGTTCCTG
18345930 AAGAAGAGATGCTCTCTATCCTGACGCATTG
196 AAGAAGAGATGCTCTCTATCCTGACGCATTG
18345961 ACGAGAAACTATTCTTTTTCGACACATCTCCATGGTATGCAGATGTCGTCAATTATTTAGTCTGT
1 ACGAGAAACTATTCTTTTTCGACACATCTCCATGGTATGCAGATGTCGTCAATTATTTAGTCTGT
*
18346026 GAAAA-TTTCCGTTGAGTGTAACTAGTCATTGAAAGGTCAGATTTCTTCGAGATGCTGCGAAGTA
66 AAAAATTTTCCGTTGAGTGTAACTAGTCATTGAAAGGTCAGATTTCTTCGAGATGCTGCGAAGTA
18346090 CCATTGGAATGAGCCATACCTGTTCAAGGTATGCGCTGATAATATTATTCGTCATTGCGTTCCTG
131 CCATTGGAATGAGCCATACCTGTTCAAGGTATGCGCTGATAATATTATTCGTCATTGCGTTCCTG
18346155 AAGAAGAGATGCTCTCTATCCTGACGCATTG
196 AAGAAGAGATGCTCTCTATCCTGACGCATTG
18346186 CCATGATACT
Statistics
Matches: 223, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
225 154 0.69
226 69 0.31
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (226 bp):
ACGAGAAACTATTCTTTTTCGACACATCTCCATGGTATGCAGATGTCGTCAATTATTTAGTCTGT
AAAAATTTTCCGTTGAGTGTAACTAGTCATTGAAAGGTCAGATTTCTTCGAGATGCTGCGAAGTA
CCATTGGAATGAGCCATACCTGTTCAAGGTATGCGCTGATAATATTATTCGTCATTGCGTTCCTG
AAGAAGAGATGCTCTCTATCCTGACGCATTG
Found at i:18347106 original size:30 final size:29
Alignment explanation
Indices: 18347071--18347148 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 29
18347061 TTTAGGGGCT
*
18347071 AAATTTGAATTTTTAGGAAGTTTGAGGGTC
1 AAATTT-AATTTTTAGGAAGCTTGAGGGTC
* *
18347101 AAATTTAAATTTTTGGGAAGCTTGAGGGTT
1 AAATTT-AATTTTTAGGAAGCTTGAGGGTC
* *
18347131 AAATCTAATTTTTTGGAA
1 AAATTTAATTTTTAGGAA
18347149 AATTTAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 11 0.26
30 31 0.74
ACGTcount: A:0.32, C:0.04, G:0.23, T:0.41
Consensus pattern (29 bp):
AAATTTAATTTTTAGGAAGCTTGAGGGTC
Found at i:18347157 original size:29 final size:30
Alignment explanation
Indices: 18347140--18347205 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
18347130 TAAATCTAAT
*
18347140 TTTTTGGAAAATTTAGGGTTTAAAACTTAA
1 TTTTTAGAAAATTTAGGGTTTAAAACTTAA
* * * *
18347170 TTTTTAGAAAGTTTAGGGGTCAAAACATAA
1 TTTTTAGAAAATTTAGGGTTTAAAACTTAA
18347200 TTTTTA
1 TTTTTA
18347206 AATAAAATAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (30 bp):
TTTTTAGAAAATTTAGGGTTTAAAACTTAA
Found at i:18347163 original size:30 final size:29
Alignment explanation
Indices: 18347125--18347205 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 29
18347115 GGGAAGCTTG
* *
18347125 AGGGTTAAATC-TAATTTTTTGGAAAATTT
1 AGGGTTAAAACTTAA-TTTTTAGAAAATTT
*
18347154 AGGGTTTAAAACTTAATTTTTAGAAAGTTT
1 AGGG-TTAAAACTTAATTTTTAGAAAATTT
* *
18347184 AGGGGTCAAAACATAATTTTTA
1 A-GGGTTAAAACTTAATTTTTA
18347206 AATAAAATAG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 4 0.09
30 34 0.77
31 6 0.14
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (29 bp):
AGGGTTAAAACTTAATTTTTAGAAAATTT
Found at i:18347604 original size:15 final size:14
Alignment explanation
Indices: 18347569--18347617 Score: 64
Period size: 13 Copynumber: 3.5 Consensus size: 14
18347559 TTCCTTAGAA
18347569 AAACCTTTTCTCTC
1 AAACCTTTTCTCTC
18347583 AAA-CTTTTCTCTC
1 AAACCTTTTCTCTC
* *
18347596 AACACCTTTTTTTTC
1 AA-ACCTTTTCTCTC
18347611 AAACCTT
1 AAACCTT
18347618 GCCCCTTTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 12 0.39
14 9 0.29
15 10 0.32
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.45
Consensus pattern (14 bp):
AAACCTTTTCTCTC
Found at i:18347694 original size:5 final size:5
Alignment explanation
Indices: 18347684--18347713 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
18347674 AAATTTCTTT
*
18347684 TTTTA TTTTA TTTTA CTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
18347714 CCTAAAACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:18347705 original size:15 final size:15
Alignment explanation
Indices: 18347685--18347714 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
18347675 AATTTCTTTT
18347685 TTTATTTTATTTTAC
1 TTTATTTTATTTTAC
18347700 TTTATTTTATTTTAC
1 TTTATTTTATTTTAC
18347715 CTAAAACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTATTTTATTTTAC
Found at i:18349078 original size:20 final size:21
Alignment explanation
Indices: 18349042--18349091 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 21
18349032 ATTGGCATGG
*
18349042 TTTATATTAAGTGTAAATA-GA
1 TTTA-ATTAAGTGTAAAAATGA
18349063 TTTAATTAAGAT-TAAAAATGA
1 TTTAATTAAG-TGTAAAAATGA
18349084 -TTAATTAA
1 TTTAATTAA
18349092 AGCTTAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (21 bp):
TTTAATTAAGTGTAAAAATGA
Found at i:18351515 original size:123 final size:123
Alignment explanation
Indices: 18351296--18351687 Score: 599
Period size: 123 Copynumber: 3.2 Consensus size: 123
18351286 TGTTGGTCCT
* * * * *
18351296 CTTCTCTATATCTCATCAGGAAGATGGGGTTTAAAGTTTTACTCATATTGAGTTTCACTTCATTA
1 CTTCTCTATATCTCATCAGGAAGATGGAGTTTGAAGTTTCACTTATATTGAGCTTCACTTCATTA
*
18351361 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGTTTCATTGTTTTGATCCA
66 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTGATCCA
* * *
18351419 CTTCTCTGTATCTCACCAGGAAGATGGAGTTTGAAGTTTCACTTACATTGAGCTT-AGCTTCATT
1 CTTCTCTATATCTCATCAGGAAGATGGAGTTTGAAGTTTCACTTATATTGAGCTTCA-CTTCATT
* * *
18351483 TATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGATCGCTTCATTGTTTTGATCCA
65 AATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTGATCCA
* * * *
18351542 CTTCTTTGTATCTCATCAGGAAGATGGAGTTTGAAG-TTCACTTATACTGAGCTTCACTTCATTG
1 CTTCTCTATATCTCATCAGGAAGATGGAGTTTGAAGTTTCACTTATATTGAGCTTCACTTCATTA
* *
18351606 ATTTGGTCTACTTCTCTGTATCTCATGAGGAAGATGACTGCTTCATTGTTTTGATCCA
66 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTGATCCA
18351664 CTTCTCTATATCTCATCAGGAAGA
1 CTTCTCTATATCTCATCAGGAAGA
18351688 ATGATTTGGT
Statistics
Matches: 244, Mismatches: 23, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
122 100 0.41
123 144 0.59
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (123 bp):
CTTCTCTATATCTCATCAGGAAGATGGAGTTTGAAGTTTCACTTATATTGAGCTTCACTTCATTA
ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTGATCCA
Found at i:18351546 original size:48 final size:48
Alignment explanation
Indices: 18351475--18351567 Score: 134
Period size: 48 Copynumber: 1.9 Consensus size: 48
18351465 ATTGAGCTTA
* *
18351475 GCTTCATTTATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGATC
1 GCTTCATTTATTTGATCCACTTCTCTATATCTCATCAGGAAGATGATC
* *
18351523 GCTTCATTGT-TTTGATCCACTTCTTTGTATCTCATCAGGAAGATG
1 GCTTCATT-TATTTGATCCACTTCTCTATATCTCATCAGGAAGATG
18351568 GAGTTTGAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 39 0.98
49 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (48 bp):
GCTTCATTTATTTGATCCACTTCTCTATATCTCATCAGGAAGATGATC
Found at i:18351713 original size:37 final size:36
Alignment explanation
Indices: 18351655--18351728 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 36
18351645 GCTTCATTGT
*
18351655 TTTGATCCACTTCTCTATATCTCATCAGGAAGAATGA
1 TTTGATCCACTTCTCTATATCTCATCAAGAAG-ATGA
* * *
18351692 TTTGGTCCACTTCTTTGTATCTCATCAAGAAGATGA
1 TTTGATCCACTTCTCTATATCTCATCAAGAAGATGA
18351728 T
1 T
18351729 CACTTTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
36 5 0.15
37 28 0.85
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (36 bp):
TTTGATCCACTTCTCTATATCTCATCAAGAAGATGA
Found at i:18351750 original size:85 final size:85
Alignment explanation
Indices: 18351604--18351772 Score: 223
Period size: 85 Copynumber: 2.0 Consensus size: 85
18351594 TTCACTTCAT
* * * * ** *
18351604 TGATTTGGTCTACTTCTCTGTATCTCATGAGGAAGATGACTGCTTCATTGTTTTGATCCACTTCT
1 TGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACTACTTCATTACTTTGAACCACTTCT
18351669 CTATATCTCATCAGGAAGAA
66 CTATATCTCATCAGGAAGAA
* *
18351689 TGATTTGGTCCACTTCTTTGTATCTCATCAAGAAGATGA-TCACTTTATTACTTTGAACCACTTC
1 TGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACT-ACTTCATTACTTTGAACCACTTC
* *
18351753 TTTGTATCTCATCAGGAAGA
65 TCTATATCTCATCAGGAAGA
18351773 TAGGGTGTGA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 1 0.01
85 71 0.99
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (85 bp):
TGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACTACTTCATTACTTTGAACCACTTCT
CTATATCTCATCAGGAAGAA
Found at i:18351990 original size:48 final size:48
Alignment explanation
Indices: 18351927--18352021 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
18351917 ACATTAAGCT
** *
18351927 CCGCTTCATTATTTTGGTCCACTT-TTCTGTATCTCATTAAGAAGATGA
1 CCGCTTCATTATTTTGACCCACTTCTT-TGTATCTCATCAAGAAGATGA
* * *
18351975 CCGCTTTATTGTTTTGACCCACTTCTTTGTATCTCATCAGGAAGATG
1 CCGCTTCATTATTTTGACCCACTTCTTTGTATCTCATCAAGAAGATG
18352022 GGGTTTGAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
48 38 0.95
49 2 0.05
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.41
Consensus pattern (48 bp):
CCGCTTCATTATTTTGACCCACTTCTTTGTATCTCATCAAGAAGATGA
Found at i:18351999 original size:247 final size:246
Alignment explanation
Indices: 18351692--18352344 Score: 885
Period size: 247 Copynumber: 2.6 Consensus size: 246
18351682 GGAAGAATGA
* * ** *
18351692 TTTGGTCCACTTCTT-TGTATCTCATCAAGAAGATGATCACTTTATTACTTTGAACCACTTCTTT
1 TTTGGTCCACTT-TTCTGTATCTCATCAAGAAGATGACCGCTTTATTGTTTTGACCCACTTCTTT
* * * * *
18351756 GTATCTCATCAGGAAGATAGGGTGTGAAGTTTCACTCACGTTAAGCTTCGATTCATTATTTTGGT
65 GTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACGTTGAGCTTCGCTTCATTGTTTTGGT
* * * * * * *
18351821 TGACTTCTTTGTATCTTATCAGAAAGATGACCACTTTATTATTTTGACCTACTTCTTTGTATCTC
130 T-ACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTATTTTGACCCACTTCTCTATATCTC
18351886 ATAAGGAAAATAGGGTTTTAAAGTTTCACTCACATTAAGCTCCGCTTCATTAT
194 ATAAGGAAAATAGGGTTTTAAAGTTTCACTCACATTAAGCTCCGCTTCATTAT
*
18351939 TTTGGTCCACTTTTCTGTATCTCATTAAGAAGATGACCGCTTTATTGTTTTGACCCACTTCTTTG
1 TTTGGTCCACTTTTCTGTATCTCATCAAGAAGATGACCGCTTTATTGTTTTGACCCACTTCTTTG
* * *
18352004 TATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCGCATTGAGCTTCGCTTTATTGTTTTGGTC
66 TATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACGTTGAGCTTCGCTTCATTGTTTTGGT-
* *
18352069 TACTTCTCTGTATCTCATCAGGAAGATGATCACTTCATTGTTTTGACCCACTTCTCTATATCTCA
130 TACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTATTTTGACCCACTTCTCTATATCTCA
** * * *
18352134 TCGGGAAAATGGGGTTTTGAAGTTTCACTCACATTGAGCTCCGCTTCATTAT
195 TAAGGAAAATAGGGTTTTAAAGTTTCACTCACATTAAGCTCCGCTTCATTAT
* * * * * * *
18352186 TTTGGTCCACGTCTCTGTATCTCATCAGGAAGATGTCTGCTTCATTGTTTTGACACACTTCTTTG
1 TTTGGTCCACTTTTCTGTATCTCATCAAGAAGATGACCGCTTTATTGTTTTGACCCACTTCTTTG
* * * * *
18352251 TATCTCATCAGAAAGATGGGGTTTTGAAGTTTCTCTCAAGTTGAGCTTCGCTTCATTGTCTTGAT
66 TATCTCATCAGGAAGATGGGG-TTTGAAGTTTCACTCACGTTGAGCTTCGCTTCATTGTTTTGGT
*
18352316 CCACTTCTCTGTATCTCATCAGGAAGATG
130 -TACTTCTCTGTATCTCATCAGGAAGATG
18352345 GGATTTGAAG
Statistics
Matches: 358, Mismatches: 45, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
246 2 0.01
247 291 0.81
248 65 0.18
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (246 bp):
TTTGGTCCACTTTTCTGTATCTCATCAAGAAGATGACCGCTTTATTGTTTTGACCCACTTCTTTG
TATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACGTTGAGCTTCGCTTCATTGTTTTGGTT
ACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTATTTTGACCCACTTCTCTATATCTCAT
AAGGAAAATAGGGTTTTAAAGTTTCACTCACATTAAGCTCCGCTTCATTAT
Found at i:18352109 original size:123 final size:123
Alignment explanation
Indices: 18351692--18352344 Score: 815
Period size: 124 Copynumber: 5.3 Consensus size: 123
18351682 GGAAGAATGA
* * ** *
18351692 TTTGGTCCACTTCTTTGTATCTCATCAAGAAGATGATCACTTTATTACTTTGAACCACTTCTTTG
1 TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCACTTTATTGTTTTGACCCACTTCTTTG
* * * * *
18351757 TATCTCATCAGGAAGATAGGGTGTGAAGTTTCACTCACGTTAAGCTTCGATTCATTAT
66 TATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTAT
** * * * * * *
18351815 TTTGGTTGACTTCTTTGTATCTTATCAGAAAGATGACCACTTTATTATTTTGACCTACTTCTTTG
1 TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCACTTTATTGTTTTGACCCACTTCTTTG
* * * * * *
18351880 TATCTCATAAGGAAAATAGGGTTTTAAAGTTTCACTCACATTAAGCTCCGCTTCATTAT
66 TATCTCATCAGGAAGAT-GGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTAT
* * * * *
18351939 TTTGGTCCACTTTTCTGTATCTCATTAAGAAGATGACCGCTTTATTGTTTTGACCCACTTCTTTG
1 TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCACTTTATTGTTTTGACCCACTTCTTTG
* * *
18352004 TATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCGCATTGAGCTTCGCTTTATTGT
66 TATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTAT
* * * *
18352062 TTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGATCACTTCATTGTTTTGACCCACTTCTCTA
1 TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCACTTTATTGTTTTGACCCACTTCTTTG
* * *
18352127 TATCTCATCGGGAAAATGGGGTTTTGAAGTTTCACTCACATTGAGCTCCGCTTCATTAT
66 TATCTCATCAGGAAGATGGGG-TTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTAT
* * * *
18352186 TTTGGTCCACGTCTCTGTATCTCATCAGGAAGATG-TCTGCTTCATTGTTTTGACACACTTCTTT
1 TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATC-ACTTTATTGTTTTGACCCACTTCTTT
* * *
18352250 GTATCTCATCAGAAAGATGGGGTTTTGAAGTTTCTCTCA-AGTTGAGCTTCGCTTCATTGT
65 GTATCTCATCAGGAAGATGGGG-TTTGAAGTTTCACTCACA-TTGAGCTTCGCTTCATTAT
* *
18352310 CTTGATCCACTTCTCTGTATCTCATCAGGAAGATG
1 TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATG
18352345 GGATTTGAAG
Statistics
Matches: 458, Mismatches: 68, Indels: 7
0.86 0.13 0.01
Matches are distributed among these distances:
123 183 0.40
124 275 0.60
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (123 bp):
TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCACTTTATTGTTTTGACCCACTTCTTTG
TATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTAT
Found at i:18352390 original size:75 final size:76
Alignment explanation
Indices: 18352224--18352395 Score: 258
Period size: 75 Copynumber: 2.3 Consensus size: 76
18352214 GAAGATGTCT
* * *
18352224 GCTTCATTGTTTTGA-CACACTTCTTTGTATCTCATCAGAAAGATGGGGTTTTGAAGTTTCTCTC
1 GCTTCATTGTTTTGATC-CACTTCTCTGTATCTCATCAGAAAGATGGGGATTTGAAGTTTCACTC
18352288 AAGTTGAGCTTC
65 AAGTTGAGCTTC
* *
18352300 GCTTCATTGTCTTGATCCACTTCTCTGTATCTCATCAGGAAGAT-GGGATTTGAAGTTTCACTCA
1 GCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGAAAGATGGGGATTTGAAGTTTCACTCA
*
18352364 TGTTGAGCTTC
66 AGTTGAGCTTC
*
18352375 GCTTCATTATTTTGATCCACT
1 GCTTCATTGTTTTGATCCACT
18352396 ACAACTTGAG
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
75 47 0.54
76 39 0.45
77 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (76 bp):
GCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGAAAGATGGGGATTTGAAGTTTCACTCA
AGTTGAGCTTC
Found at i:18352487 original size:45 final size:45
Alignment explanation
Indices: 18352438--18352811 Score: 309
Period size: 45 Copynumber: 8.4 Consensus size: 45
18352428 TCCTTTTAAC
* * * * *
18352438 TTAGGGGTAAAGGATTGAATGATGGTTTTAATCTGTCCTTCTTGA
1 TTAGGGGTAAAAGATTGAATGATGGCTTCAATCTGCCCCTCTTGA
* *
18352483 TTAGGGGTAAAAGATTGGAATGA---CTTTAA-CTTGCCCCTCTGGA
1 TTAGGGGTAAAAGATT-GAATGATGGCTTCAATC-TGCCCCTCTTGA
* * * * *
18352526 TTAGGGGTAAAAGATTGGACGGTGACTTCAATCTGCCCCTCTTAA
1 TTAGGGGTAAAAGATTGAATGATGGCTTCAATCTGCCCCTCTTGA
* * * * *
18352571 CTAAGGGTAAAAGTTTGGAA-GATGGCTTCAATCTGCCCTTCTTAA
1 TTAGGGGTAAAAGATT-GAATGATGGCTTCAATCTGCCCCTCTTGA
* * **
18352616 CTAGGGGTAAAAGATAGGAA-CCTGGCTTCAATCTG-CCCTCTTGA
1 TTAGGGGTAAAAGAT-TGAATGATGGCTTCAATCTGCCCCTCTTGA
*
18352660 TTAGGGGTAAAAGATTGGAA-GATGGCTTCAATCTGCCCCTCTTAA
1 TTAGGGGTAAAAGATT-GAATGATGGCTTCAATCTGCCCCTCTTGA
* * * * ** *
18352705 CTAGGGGTAAAAGAGT-AGTGATGGTTTTTATCTGTCCCGTCTTGA
1 TTAGGGGTAAAAGATTGAATGATGGCTTCAATCTG-CCCCTCTTGA
* * * *
18352750 CTT-GGGGTAAACGATTGGATGATGACTTCAATCTTCCCCTCTTGA
1 -TTAGGGGTAAAAGATTGAATGATGGCTTCAATCTGCCCCTCTTGA
18352795 CTTAGGGGTAAAAGATT
1 -TTAGGGGTAAAAGATT
18352812 AGATGATAGC
Statistics
Matches: 264, Mismatches: 50, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
42 4 0.02
43 31 0.12
44 49 0.19
45 147 0.56
46 33 0.12
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (45 bp):
TTAGGGGTAAAAGATTGAATGATGGCTTCAATCTGCCCCTCTTGA
Found at i:18352645 original size:90 final size:88
Alignment explanation
Indices: 18352467--18352810 Score: 347
Period size: 90 Copynumber: 3.9 Consensus size: 88
18352457 TGATGGTTTT
* * * * * ** *
18352467 AATCTGTCCTTCTTGATTAGGGGTAAAAGATTGG-A-ATGACTTTAA-CTTGCCCCTCTGGATTA
1 AATCTGCCCCTCTTGACTAGGGGTAAAAGATTGGAAGATGGCTTCAATC-TGCCCCTCTTAACTA
* *
18352529 GGGGTAAAAGATTGGACGGTGACTTC
65 GGGGTAAAAGATAGGAC--TGGCTTC
* * * *
18352555 AATCTGCCCCTCTTAACTAAGGGTAAAAGTTTGGAAGATGGCTTCAATCTGCCCTTCTTAACTAG
1 AATCTGCCCCTCTTGACTAGGGGTAAAAGATTGGAAGATGGCTTCAATCTGCCCCTCTTAACTAG
18352620 GGGTAAAAGATAGGAACCTGGCTTC
66 GGGTAAAAGATAGG-A-CTGGCTTC
*
18352645 AATCTG-CCCTCTTGATTAGGGGTAAAAGATTGGAAGATGGCTTCAATCTGCCCCTCTTAACTAG
1 AATCTGCCCCTCTTGACTAGGGGTAAAAGATTGGAAGATGGCTTCAATCTGCCCCTCTTAACTAG
* *
18352709 GGGTAAAAGAGTAGTGA-TGGTTTT
66 GGGTAAAAGA-TAG-GACTGGCTTC
* * * * * * * *
18352733 TATCTGTCCCGTCTTGACTTGGGGTAAACGATTGGATGATGACTTCAATCTTCCCCTCTTGACTT
1 AATCTG-CCCCTCTTGACTAGGGGTAAAAGATTGGAAGATGGCTTCAATCTGCCCCTCTTAAC-T
18352798 AGGGGTAAAAGAT
64 AGGGGTAAAAGAT
18352811 TAGATGATAG
Statistics
Matches: 216, Mismatches: 30, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
88 38 0.18
89 64 0.30
90 97 0.45
91 16 0.07
92 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (88 bp):
AATCTGCCCCTCTTGACTAGGGGTAAAAGATTGGAAGATGGCTTCAATCTGCCCCTCTTAACTAG
GGGTAAAAGATAGGACTGGCTTC
Found at i:18352676 original size:134 final size:132
Alignment explanation
Indices: 18352418--18352811 Score: 443
Period size: 134 Copynumber: 2.9 Consensus size: 132
18352408 AGATAATAGT
* * * * *
18352418 TTCAATCTACTCCTTTTAACTTAGGGGTAAAGGATTGAATGATGGTTTTAATCTGTCCTTCTTGA
1 TTCAATCTGCCCCTCTTAAC-TAGGGGTAAAAGATTGAA-GATGGTTTTAATCTGCCCTTCTTGA
* * * *
18352483 TTAGGGGTAAAAGATTGGAATGACTTTAA-CTTGCCCCTCTGGATTAGGGGTAAAAGATTGGACG
64 CTAGGGGTAAAAGATTGGAATGACTTCAATCTTG-CCCTCTTGATTAGGGGTAAAAGATTGGAAG
*
18352547 GTGAC
128 ATGAC
* * * * *
18352552 TTCAATCTGCCCCTCTTAACTAAGGGTAAAAGTTTGGAAGATGGCTTCAATCTGCCCTTCTTAAC
1 TTCAATCTGCCCCTCTTAACTAGGGGTAAAAGATT-GAAGATGGTTTTAATCTGCCCTTCTTGAC
* *
18352617 TAGGGGTAAAAGATAGGAACCTGGCTTCAATC-TGCCCTCTTGATTAGGGGTAAAAGATTGGAAG
65 TAGGGGTAAAAGATTGGAA--TGACTTCAATCTTGCCCTCTTGATTAGGGGTAAAAGATTGGAAG
*
18352681 ATGGC
128 ATGAC
* * * *
18352686 TTCAATCTGCCCCTCTTAACTAGGGGTAAAAGAGT-AGTGATGGTTTTTATCTGTCCCGTCTTGA
1 TTCAATCTGCCCCTCTTAACTAGGGGTAAAAGATTGA-AGATGGTTTTAATCTG-CCCTTCTTGA
* * *
18352750 CTTGGGGTAAACGATTGGATGATGACTTCAATCTTCCCCTCTTGACTTAGGGGTAAAAGATT
64 CTAGGGGTAAAAGATTGGA--ATGACTTCAATCTTGCCCTCTTGA-TTAGGGGTAAAAGATT
18352812 AGATGATAGC
Statistics
Matches: 218, Mismatches: 32, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
132 1 0.00
133 63 0.29
134 117 0.54
135 19 0.09
136 18 0.08
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (132 bp):
TTCAATCTGCCCCTCTTAACTAGGGGTAAAAGATTGAAGATGGTTTTAATCTGCCCTTCTTGACT
AGGGGTAAAAGATTGGAATGACTTCAATCTTGCCCTCTTGATTAGGGGTAAAAGATTGGAAGATG
AC
Found at i:18353307 original size:49 final size:49
Alignment explanation
Indices: 18353254--18353363 Score: 148
Period size: 49 Copynumber: 2.2 Consensus size: 49
18353244 CATCTTTAGT
* * * *
18353254 GTATAAGATTCGTTGTTGCAGCTTTAATCTTCCCCTTCACATCACTAAG
1 GTATAAGATTCGTCGTTGCAGCTTCAACCTTCCCCATCACATCACTAAG
* * * *
18353303 GTATAAGGTTTGTCGTTGCAGCTTCAACCTTTCCCATCACATCTCTAAG
1 GTATAAGATTCGTCGTTGCAGCTTCAACCTTCCCCATCACATCACTAAG
18353352 GTATAAGATTCG
1 GTATAAGATTCG
18353364 CCATTGTAGC
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (49 bp):
GTATAAGATTCGTCGTTGCAGCTTCAACCTTCCCCATCACATCACTAAG
Found at i:18353422 original size:13 final size:13
Alignment explanation
Indices: 18353404--18353430 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18353394 TCCTATGGTA
18353404 TAAGATTCGCCAT
1 TAAGATTCGCCAT
18353417 TAAGATTCGCCAT
1 TAAGATTCGCCAT
18353430 T
1 T
18353431 GCGGCTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (13 bp):
TAAGATTCGCCAT
Found at i:18355273 original size:23 final size:22
Alignment explanation
Indices: 18355246--18355290 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
18355236 CATCTCGACC
*
18355246 CTTTTCTT-TTTCTTTCTATTTT
1 CTTTTTTTCTTTCTTTCT-TTTT
18355268 CTTTTTTTCTTTCTTTCTTTTT
1 CTTTTTTTCTTTCTTTCTTTTT
18355290 C
1 C
18355291 CTCTCTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (22 bp):
CTTTTTTTCTTTCTTTCTTTTT
Found at i:18355297 original size:19 final size:16
Alignment explanation
Indices: 18355247--18355301 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 16
18355237 ATCTCGACCC
*
18355247 TTTTCTTTTTCTTTCTA
1 TTTTCTTTTTC-TTCTT
18355264 TTTTCTTTTT-TTCTT
1 TTTTCTTTTTCTTCTT
18355279 TCTTTCTTTTTCCTCTCTT
1 T-TTTCTTTTT-CT-TCTT
18355298 TTTT
1 TTTT
18355302 TGACCTCTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
15 5 0.15
16 9 0.27
17 10 0.30
18 4 0.12
19 5 0.15
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTCTTTTTCTTCTT
Found at i:18358062 original size:12 final size:13
Alignment explanation
Indices: 18358045--18358076 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
18358035 GATGTAATGC
18358045 AAGCAAAAA-AAA
1 AAGCAAAAAGAAA
18358057 AAGCAAAAAGAAA
1 AAGCAAAAAGAAA
18358070 AAG-AAAA
1 AAGCAAAA
18358077 CAAGTCAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.81, C:0.06, G:0.12, T:0.00
Consensus pattern (13 bp):
AAGCAAAAAGAAA
Found at i:18359502 original size:29 final size:29
Alignment explanation
Indices: 18359468--18359612 Score: 110
Period size: 30 Copynumber: 4.9 Consensus size: 29
18359458 GCCAAATTCG
18359468 AATTTTTGGGAAGTTTAGGGTCAAATCTA
1 AATTTTTGGGAAGTTTAGGGTCAAATCTA
** * * **
18359497 AATTTTTAAGAAGTTTGGAGGTTAAATCCG
1 AATTTTTGGGAAGTTTAG-GGTCAAATCTA
* * *
18359527 AATGTTTGGGAACTTCAAGGGTCAAATCTA
1 AATTTTTGGGAAGTT-TAGGGTCAAATCTA
* * * *
18359557 AATTTTTGGAAAGTTTAAGGGTTAAAACTT
1 AATTTTTGGGAAGTTT-AGGGTCAAATCTA
***
18359587 AATTTTTAAAAAGTTTAGGGGTCAAA
1 AATTTTTGGGAAGTTTA-GGGTCAAA
18359613 ACATAATTTT
Statistics
Matches: 87, Mismatches: 25, Indels: 7
0.73 0.21 0.06
Matches are distributed among these distances:
29 16 0.18
30 70 0.80
31 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36
Consensus pattern (29 bp):
AATTTTTGGGAAGTTTAGGGTCAAATCTA
Found at i:18359600 original size:30 final size:30
Alignment explanation
Indices: 18359543--18359626 Score: 105
Period size: 30 Copynumber: 2.8 Consensus size: 30
18359533 TGGGAACTTC
* * **
18359543 AAGGGTCAAATCTAAATTTTTGGAAAGTTT
1 AAGGGTCAAAACTTAATTTTTAAAAAGTTT
*
18359573 AAGGGTTAAAACTTAATTTTTAAAAAGTTT
1 AAGGGTCAAAACTTAATTTTTAAAAAGTTT
* *
18359603 AGGGGTCAAAACATAATTTTTAAA
1 AAGGGTCAAAACTTAATTTTTAAA
18359627 TAAAACAGGA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.36
Consensus pattern (30 bp):
AAGGGTCAAAACTTAATTTTTAAAAAGTTT
Found at i:18360007 original size:13 final size:13
Alignment explanation
Indices: 18359989--18360013 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18359979 TAAAAAAAAC
18359989 CTTTTCTCTCAAA
1 CTTTTCTCTCAAA
18360002 CTTTTCTCTCAA
1 CTTTTCTCTCAA
18360014 CACCCTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.00, T:0.48
Consensus pattern (13 bp):
CTTTTCTCTCAAA
Found at i:18366131 original size:91 final size:92
Alignment explanation
Indices: 18365976--18366158 Score: 359
Period size: 91 Copynumber: 2.0 Consensus size: 92
18365966 TAAATTCTGT
18365976 TGACTTTAATTGTGTATGGAAGTACCTATTAATGTTAGATCTACTTTGATTTCTGCTTAA-TTTT
1 TGACTTTAATTGTGTATGGAAGTACCTATTAATGTTAGATCTACTTTGATTTCTGCTTAATTTTT
18366040 TTTTGTCTTTGGATTTAATTGTTTTGA
66 TTTTGTCTTTGGATTTAATTGTTTTGA
18366067 TGACTTTAATTGTGTATGGAAGTACCTATTAATGTTAGATCTACTTTGATTTCTGCTTAATTTTT
1 TGACTTTAATTGTGTATGGAAGTACCTATTAATGTTAGATCTACTTTGATTTCTGCTTAATTTTT
18366132 TTTTGTCTTTGGATTTAATTGTTTTGA
66 TTTTGTCTTTGGATTTAATTGTTTTGA
18366159 CCACGGAAGT
Statistics
Matches: 91, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
91 60 0.66
92 31 0.34
ACGTcount: A:0.22, C:0.09, G:0.16, T:0.53
Consensus pattern (92 bp):
TGACTTTAATTGTGTATGGAAGTACCTATTAATGTTAGATCTACTTTGATTTCTGCTTAATTTTT
TTTTGTCTTTGGATTTAATTGTTTTGA
Found at i:18366607 original size:27 final size:27
Alignment explanation
Indices: 18366569--18366627 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
18366559 AGTTTTACAA
*
18366569 TATTTATGCTGACAGTTTTAACTTTTT
1 TATTTATGCTGACAGTTTTAACTCTTT
*
18366596 TATTTATGCTGATAGTTTTAACTCTTT
1 TATTTATGCTGACAGTTTTAACTCTTT
*
18366623 CATTT
1 TATTT
18366628 GTGTAGTCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.22, C:0.12, G:0.10, T:0.56
Consensus pattern (27 bp):
TATTTATGCTGACAGTTTTAACTCTTT
Found at i:18369525 original size:17 final size:17
Alignment explanation
Indices: 18369503--18369535 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
18369493 TAATTCTTTA
18369503 AAACTATCGAA-CTTACT
1 AAACTAT-GAAGCTTACT
18369520 AAACTATGAAGCTTAC
1 AAACTATGAAGCTTAC
18369536 CAAAGATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.27
Consensus pattern (17 bp):
AAACTATGAAGCTTACT
Found at i:18370115 original size:21 final size:21
Alignment explanation
Indices: 18370091--18370145 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
18370081 TAGAAGTAAG
* *
18370091 ACTTGTTTCGGTAGAAGAGTC
1 ACTTGTATCGGTAGAACAGTC
* *
18370112 ACTTGTATCAGTAGAACTGTC
1 ACTTGTATCGGTAGAACAGTC
18370133 ACTTGTATCGGTA
1 ACTTGTATCGGTA
18370146 AAAGTCTGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (21 bp):
ACTTGTATCGGTAGAACAGTC
Found at i:18373369 original size:19 final size:20
Alignment explanation
Indices: 18373345--18373389 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
18373335 GTATAAATAA
*
18373345 TTTGAAA-TTTAAAAATTAT
1 TTTGAAATTTTAAAAATCAT
*
18373364 TTTGAAATTTTGAAAATCAT
1 TTTGAAATTTTAAAAATCAT
18373384 TTTGAA
1 TTTGAA
18373390 TTTCTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (20 bp):
TTTGAAATTTTAAAAATCAT
Found at i:18375986 original size:2 final size:2
Alignment explanation
Indices: 18375979--18376005 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18375969 ATACAAATAA
18375979 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
18376006 AACTTGTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18380244 original size:34 final size:34
Alignment explanation
Indices: 18380201--18380314 Score: 115
Period size: 34 Copynumber: 3.4 Consensus size: 34
18380191 GAGCCCAGCT
18380201 CTAGTTGGATAAACCAACAATATTGCGCCTAGAG
1 CTAGTTGGATAAACCAACAATATTGCGCCTAGAG
* * * * * *
18380235 CTAGTTGGATAAGCCGACAAAAGTGTGCCCAGCA-
1 CTAGTTGGATAAACCAACAATATTGCGCCTAG-AG
* *
18380269 CTAGTTGGATAAACCAACAATATTACGTCTA-ACG
1 CTAGTTGGATAAACCAACAATATTGCGCCTAGA-G
*
18380303 CTAGTCGGATAA
1 CTAGTTGGATAA
18380315 CTAAAAAATT
Statistics
Matches: 62, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
32 1 0.02
34 60 0.97
35 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (34 bp):
CTAGTTGGATAAACCAACAATATTGCGCCTAGAG
Found at i:18380292 original size:108 final size:108
Alignment explanation
Indices: 18380057--18380292 Score: 298
Period size: 108 Copynumber: 2.2 Consensus size: 108
18380047 CTAAAGATAG
* * *
18380057 TCAGATAAACCAACGATA-T-TAAATGTGAGCCCAGCTCTAGTTGGACAAACCAACGATATTGCG
1 TCAGATAAACCAACAATATTGTTAA--TGAGCCCAGCTCTAGTTGGACAAACCAACAATATTGCG
18380120 CCCAACGCTAGTCGGATAAACCGACAAAAGTGTGCCCAGCACTAA
64 CCCAACGCTAGTCGGATAAACCGACAAAAGTGTGCCCAGCACTAA
* * ** *
18380165 TCAGATAAGCTAATGATATTGTTAATGAGCCCAGCTCTAGTTGGATAAACCAACAATATTGCGCC
1 TCAGATAAACCAACAATATTGTTAATGAGCCCAGCTCTAGTTGGACAAACCAACAATATTGCGCC
* * * *
18380230 TAGA-GCTAGTTGGATAAGCCGACAAAAGTGTGCCCAGCACTAG
66 CA-ACGCTAGTCGGATAAACCGACAAAAGTGTGCCCAGCACTAA
**
18380273 TTGGATAAACCAACAATATT
1 TCAGATAAACCAACAATATT
18380293 ACGTCTAACG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
108 104 0.95
109 2 0.02
110 3 0.03
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (108 bp):
TCAGATAAACCAACAATATTGTTAATGAGCCCAGCTCTAGTTGGACAAACCAACAATATTGCGCC
CAACGCTAGTCGGATAAACCGACAAAAGTGTGCCCAGCACTAA
Found at i:18380760 original size:2 final size:2
Alignment explanation
Indices: 18380748--18380783 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
18380738 AATCCGCAAC
*
18380748 CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
18380784 TATATATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (2 bp):
CA
Found at i:18391722 original size:26 final size:26
Alignment explanation
Indices: 18391686--18391736 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18391676 GTAAAAATAA
*
18391686 TGTGTAAATATA-AAATAGTGTATATG
1 TGTGTAAATATATAAAT-GTGGATATG
*
18391712 TGTGTATATATATAAATGTGGATAT
1 TGTGTAAATATATAAATGTGGATAT
18391737 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (26 bp):
TGTGTAAATATATAAATGTGGATATG
Found at i:18391737 original size:28 final size:28
Alignment explanation
Indices: 18391685--18391755 Score: 69
Period size: 28 Copynumber: 2.6 Consensus size: 28
18391675 TGTAAAAATA
* *
18391685 ATGTGTAAATATA-AAATAGTGTATATG
1 ATGTGTATATATATAAATAGTGTATAAG
18391712 -TGTGTATATATATAAAT-GTGGATATAAG
1 ATGTGTATATATATAAATAGT-G-TATAAG
*
18391740 AT-TGTATATATTTAAA
1 ATGTGTATATATATAAA
18391756 ATAATATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
26 13 0.35
27 5 0.14
28 18 0.49
29 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.41
Consensus pattern (28 bp):
ATGTGTATATATATAAATAGTGTATAAG
Found at i:18404867 original size:2 final size:2
Alignment explanation
Indices: 18404860--18404885 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
18404850 GTTATAATTC
18404860 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
18404886 GTGTGTGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18406320 original size:24 final size:23
Alignment explanation
Indices: 18406229--18406315 Score: 61
Period size: 24 Copynumber: 3.6 Consensus size: 23
18406219 AGGCCTACCC
18406229 ATATTAT-TTTTTATTTTTTTAA
1 ATATTATATTTTTATTTTTTTAA
* * * *
18406251 AAAATATCTATTTTATTTTATTTTA
1 ATATTATAT-TTTTATTTT-TTTAA
18406276 ATATTTAATAATTTTATATATTTTTTAA
1 ATA-TT-AT-ATTTT-TAT-TTTTTTAA
18406304 ATATTA-ATTTTT
1 ATATTATATTTTT
18406316 TATATAGTCA
Statistics
Matches: 50, Mismatches: 7, Indels: 15
0.69 0.10 0.21
Matches are distributed among these distances:
22 5 0.10
23 2 0.04
24 14 0.28
25 6 0.12
26 2 0.04
27 7 0.14
28 11 0.22
29 3 0.06
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (23 bp):
ATATTATATTTTTATTTTTTTAA
Found at i:18407552 original size:16 final size:16
Alignment explanation
Indices: 18407531--18407581 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
18407521 ATATTTTTAA
18407531 TATTTTTAATGATTTT
1 TATTTTTAATGATTTT
* *
18407547 TATTTTTATTGCTTTT
1 TATTTTTAATGATTTT
*
18407563 ATTTTTTTAATTGATTTT
1 -TATTTTTAA-TGATTTT
18407581 T
1 T
18407582 TTATGATTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 14 0.50
17 8 0.29
18 6 0.21
ACGTcount: A:0.20, C:0.02, G:0.06, T:0.73
Consensus pattern (16 bp):
TATTTTTAATGATTTT
Found at i:18410031 original size:78 final size:73
Alignment explanation
Indices: 18409856--18410054 Score: 272
Period size: 78 Copynumber: 2.7 Consensus size: 73
18409846 TAGAAATTAA
* * * *
18409856 AATTGAATAATTTTGTTTCGGGATTTATTCATGTCGTTGAACAGAATTTATTCTTTTTTTTCAAA
1 AATTAAATAATTTTGTTTCAGGATTTATTCCTGTCGTTCAACAGAATTTATTCTTTTTTTTCAAA
18409921 CAAGAATT
66 CAAGAATT
*
18409929 AATTAAATAATTTTGTTTTAGGATTTATTCCTGTCGTTCAACAGAATTTATTCTATTTTTTATTT
1 AATTAAATAATTTTGTTTCAGGATTTATTCCTGTCGTTCAACAGAATTTATTC---TTTTT-TTT
18409994 CCAAACAAGAATT
62 -CAAACAAGAATT
* ** *
18410007 AATTAAATAATTCTGTTTCAGGATTTATTCCTACCGTTCAAGAGAATT
1 AATTAAATAATTTTGTTTCAGGATTTATTCCTGTCGTTCAACAGAATT
18410055 GATTTTGATT
Statistics
Matches: 111, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
73 48 0.43
76 5 0.05
77 3 0.03
78 55 0.50
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.45
Consensus pattern (73 bp):
AATTAAATAATTTTGTTTCAGGATTTATTCCTGTCGTTCAACAGAATTTATTCTTTTTTTTCAAA
CAAGAATT
Found at i:18414296 original size:16 final size:16
Alignment explanation
Indices: 18414275--18414308 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
18414265 ACACAATTTC
18414275 TTTTTCTCT-CTAGAAT
1 TTTTTCTCTGCTA-AAT
18414291 TTTTTCTCTGCTAAAT
1 TTTTTCTCTGCTAAAT
18414307 TT
1 TT
18414309 CATACGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.59
Consensus pattern (16 bp):
TTTTTCTCTGCTAAAT
Found at i:18418376 original size:26 final size:26
Alignment explanation
Indices: 18418347--18418425 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
18418337 AACATGAGAC
*
18418347 ATAAGAAATTAACATCATAATATAAA
1 ATAAGAAATTAACATCAGAATATAAA
* *
18418373 ATAAGAAATTAACCTTAGAATATAAA
1 ATAAGAAATTAACATCAGAATATAAA
* **
18418399 ATTTA-AAATTAACATTTGAATATAAA
1 A-TAAGAAATTAACATCAGAATATAAA
18418425 A
1 A
18418426 CAAATCACTA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 44 0.96
27 2 0.04
ACGTcount: A:0.58, C:0.06, G:0.05, T:0.30
Consensus pattern (26 bp):
ATAAGAAATTAACATCAGAATATAAA
Found at i:18419973 original size:26 final size:26
Alignment explanation
Indices: 18419944--18420007 Score: 85
Period size: 25 Copynumber: 2.5 Consensus size: 26
18419934 ATAGAGTTTA
*
18419944 GCTCTTACGAGCCCATACAAAATATT
1 GCTCTTACGAGCCCAAACAAAATATT
* *
18419970 GCTCTTACGA-TCCAAACAGAATATT
1 GCTCTTACGAGCCCAAACAAAATATT
*
18419995 GCTCTTACAAGCC
1 GCTCTTACGAGCC
18420008 AGACGGAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 21 0.66
26 11 0.34
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (26 bp):
GCTCTTACGAGCCCAAACAAAATATT
Found at i:18420032 original size:25 final size:25
Alignment explanation
Indices: 18419945--18420035 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
18419935 TAGAGTTTAG
* * **
18419945 CTCTTACGAGCCCATACAAAATATTG
1 CTCTTACGAG-CCAGACAGAATATCA
* * **
18419971 CTCTTACGATCCAAACAGAATATTG
1 CTCTTACGAGCCAGACAGAATATCA
* *
18419996 CTCTTACAAGCCAGACGGAATATCA
1 CTCTTACGAGCCAGACAGAATATCA
18420021 CTCTTACGAGCCAGA
1 CTCTTACGAGCCAGA
18420036 GTTCAAGAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 46 0.84
26 9 0.16
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.24
Consensus pattern (25 bp):
CTCTTACGAGCCAGACAGAATATCA
Found at i:18427843 original size:40 final size:40
Alignment explanation
Indices: 18427788--18427900 Score: 149
Period size: 40 Copynumber: 2.8 Consensus size: 40
18427778 GAGAATATTT
*
18427788 ATTGAACTAGCAGTGACACTGTAAACACTGA-AA-AATTACA
1 ATTGAACTGGCAGTGACACTGTAAACACT-ACAAGAA-TACA
*
18427828 ATTGAACTGGCAGTGACACTGTAAACACTACAAGAATACC
1 ATTGAACTGGCAGTGACACTGTAAACACTACAAGAATACA
* * *
18427868 ACTGAACTGGTAGTGAAACTGTAAACACTACAA
1 ATTGAACTGGCAGTGACACTGTAAACACTACAA
18427901 TGTGTCAAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.02
40 63 0.95
41 2 0.03
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.21
Consensus pattern (40 bp):
ATTGAACTGGCAGTGACACTGTAAACACTACAAGAATACA
Found at i:18430375 original size:20 final size:20
Alignment explanation
Indices: 18430350--18430415 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 20
18430340 TCAAAAAAAA
*
18430350 GTCAACGATCAAAGTCAATT
1 GTCAACGATCAAAGTCAACT
18430370 GTCAAC-AGTCAAAGTCAACT
1 GTCAACGA-TCAAAGTCAACT
*
18430390 GTCAACGGTCAACTA-TCAACT
1 GTCAACGATCAA--AGTCAACT
18430411 GTCAA
1 GTCAA
18430416 GGTCAACGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
19 1 0.03
20 27 0.68
21 11 0.28
22 1 0.03
ACGTcount: A:0.38, C:0.24, G:0.15, T:0.23
Consensus pattern (20 bp):
GTCAACGATCAAAGTCAACT
Found at i:18430408 original size:27 final size:27
Alignment explanation
Indices: 18430370--18430425 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
18430360 AAAGTCAATT
*
18430370 GTCAACAGTCAA-AGTCAACTGTCAACG
1 GTCAACAGTCAACAGTCAA-GGTCAACG
*
18430397 GTCAACTA-TCAACTGTCAAGGTCAACG
1 GTCAAC-AGTCAACAGTCAAGGTCAACG
18430424 GT
1 GT
18430426 AAACGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (27 bp):
GTCAACAGTCAACAGTCAAGGTCAACG
Found at i:18430410 original size:21 final size:20
Alignment explanation
Indices: 18430384--18430422 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
18430374 ACAGTCAAAG
18430384 TCAACTGTCAACGGTCAACTA
1 TCAACTGTCAA-GGTCAACTA
18430405 TCAACTGTCAAGGTCAAC
1 TCAACTGTCAAGGTCAAC
18430423 GGTAAACGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (20 bp):
TCAACTGTCAAGGTCAACTA
Found at i:18440794 original size:24 final size:24
Alignment explanation
Indices: 18440708--18440782 Score: 114
Period size: 24 Copynumber: 3.1 Consensus size: 24
18440698 AGAAATAATC
* * *
18440708 TTTCAGTTAAACTATGTTTAATTG
1 TTTCAATTAAACTCTGTTTATTTG
*
18440732 TTTCAATTAAACTCTATTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
18440756 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
18440780 TTT
1 TTT
18440783 GAGTCAAACT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.27, C:0.11, G:0.08, T:0.55
Consensus pattern (24 bp):
TTTCAATTAAACTCTGTTTATTTG
Found at i:18442716 original size:24 final size:24
Alignment explanation
Indices: 18442688--18442750 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
18442678 AGAAATAATC
*
18442688 TTTCAGTTAAACTCTGTTTAATTG
1 TTTCAGTTAAACTCTATTTAATTG
* *
18442712 TTTCAATTAAACTCTATTTATTTG
1 TTTCAGTTAAACTCTATTTAATTG
* *
18442736 TTTGAGTCAAACTCT
1 TTTCAGTTAAACTCT
18442751 TATTAGTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.27, C:0.14, G:0.10, T:0.49
Consensus pattern (24 bp):
TTTCAGTTAAACTCTATTTAATTG
Found at i:18443900 original size:17 final size:17
Alignment explanation
Indices: 18443855--18443954 Score: 67
Period size: 19 Copynumber: 5.5 Consensus size: 17
18443845 AATCAAAATA
* *
18443855 AAAAAATAATAAAAATT
1 AAAAAATATTAAATATT
*
18443872 ATAAGAATTATTAAATATT
1 A-AA-AAATATTAAATATT
*
18443891 AAAAAATATTACAAATATA
1 AAAAAATATT--AAATATT
* * *
18443910 AAAATTAAAATAAAATTTT
1 AAAA--AATATTAAATATT
18443929 AAAAAATA-TAAATATT
1 AAAAAATATTAAATATT
18443945 ATAAAAATAT
1 A-AAAAATAT
18443955 AAAAGAATCT
Statistics
Matches: 63, Mismatches: 12, Indels: 15
0.70 0.13 0.17
Matches are distributed among these distances:
16 7 0.11
17 17 0.27
18 4 0.06
19 31 0.49
21 4 0.06
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (17 bp):
AAAAAATATTAAATATT
Found at i:18443931 original size:38 final size:39
Alignment explanation
Indices: 18443884--18443958 Score: 102
Period size: 38 Copynumber: 1.9 Consensus size: 39
18443874 AAGAATTATT
18443884 AAATATTAAAAAATATTACAA-A-TATAAAAAT-TAAAATA
1 AAATATTAAAAAATA-TA-AATATTATAAAAATATAAAATA
*
18443922 AAATTTTAAAAAATATAAATATTATAAAAATATAAAA
1 AAATATTAAAAAATATAAATATTATAAAAATATAAAA
18443959 GAATCTAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
36 2 0.06
37 3 0.09
38 23 0.70
39 5 0.15
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (39 bp):
AAATATTAAAAAATATAAATATTATAAAAATATAAAATA
Found at i:18443955 original size:17 final size:16
Alignment explanation
Indices: 18443894--18443957 Score: 64
Period size: 15 Copynumber: 4.2 Consensus size: 16
18443884 AAATATTAAA
*
18443894 AAATATT-ACAAATAT
1 AAATATTAAAAAATAT
*
18443909 AAAAATT--AAAATA-
1 AAATATTAAAAAATAT
*
18443922 AAATTTTAAAAAATAT
1 AAATATTAAAAAATAT
18443938 AAATATTATAAAAATAT
1 AAATATTA-AAAAATAT
18443955 AAA
1 AAA
18443958 AGAATCTAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
13 5 0.12
14 5 0.12
15 12 0.30
16 7 0.17
17 11 0.28
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATATTAAAAAATAT
Found at i:18443985 original size:10 final size:9
Alignment explanation
Indices: 18443856--18443988 Score: 85
Period size: 9 Copynumber: 14.4 Consensus size: 9
18443846 ATCAAAATAA
*
18443856 AAAAATAAT
1 AAAAATTAT
18443865 AAAAATTAT
1 AAAAATTAT
*
18443874 AAGAATTATT
1 AAAAATTA-T
*
18443884 AAATATTA-
1 AAAAATTAT
18443892 AAAAA-TATT
1 AAAAATTA-T
*
18443901 ACAAA-TAT
1 AAAAATTAT
*
18443909 AAAAATTAAA
1 AAAAATT-AT
*
18443919 ATAAAATTTT
1 A-AAAATTAT
*
18443929 AAAAAATAT
1 AAAAATTAT
*
18443938 AAATATTAT
1 AAAAATTAT
18443947 AAAAA-TAT
1 AAAAATTAT
* *
18443955 AAAAGAATCT
1 AAAA-ATTAT
18443965 AATAAATTAT
1 AA-AAATTAT
18443975 AAAAGATTAT
1 AAAA-ATTAT
18443985 AAAA
1 AAAA
18443989 TTAATAAACC
Statistics
Matches: 96, Mismatches: 18, Indels: 19
0.72 0.14 0.14
Matches are distributed among these distances:
7 2 0.02
8 16 0.17
9 42 0.44
10 28 0.29
11 8 0.08
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:18444055 original size:19 final size:19
Alignment explanation
Indices: 18444032--18444077 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
18444022 ATTAAAATTC
18444032 TATAAAAATCATAAAAA-A
1 TATAAAAATCATAAAAAGA
* *
18444050 TCATAAATATTATAAAAAGA
1 T-ATAAAAATCATAAAAAGA
18444070 TATAAAAA
1 TATAAAAA
18444078 GTATTAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 1 0.04
19 20 0.87
20 2 0.09
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.26
Consensus pattern (19 bp):
TATAAAAATCATAAAAAGA
Found at i:18444553 original size:9 final size:9
Alignment explanation
Indices: 18444541--18444778 Score: 94
Period size: 9 Copynumber: 26.4 Consensus size: 9
18444531 TTTTCTGATT
18444541 TTTTTATAA
1 TTTTTATAA
18444550 -TTTT-TAA
1 TTTTTATAA
18444557 TTTTATATCAA
1 TTTT-TAT-AA
*
18444568 -TTTAAT-A
1 TTTTTATAA
18444575 TTTTTAT--
1 TTTTTATAA
*
18444582 TTTTTAAGAA
1 TTTTT-ATAA
*
18444592 TTTTAATACA
1 TTTTTATA-A
18444602 TTTTT-TAA
1 TTTTTATAA
**
18444610 AATTTA-AA
1 TTTTTATAA
18444618 TATTTTAAATAA
1 T-TTTT--ATAA
*
18444630 GTTTTACTAA
1 TTTTTA-TAA
18444640 -TTTTATAAA
1 TTTTTAT-AA
*
18444649 TTTTTTTAA
1 TTTTTATAA
*
18444658 TTTATTAGAA
1 TTT-TTATAA
18444668 TTTTTAT-A
1 TTTTTATAA
18444676 TTTTTATAA
1 TTTTTATAA
*
18444685 TATTTATAA
1 TTTTTATAA
18444694 GTTTTTAT-A
1 -TTTTTATAA
18444703 TTTTTATTAA
1 TTTTTA-TAA
* *
18444713 GTTTGTGTGAA
1 -TTTTTAT-AA
18444724 -TTTTA-AA
1 TTTTTATAA
*
18444731 -ATTT-TAA
1 TTTTTATAA
18444738 TTTTT-TAA
1 TTTTTATAA
*
18444746 TATTTAATAA
1 T-TTTTATAA
18444756 TTTTTTATAA
1 -TTTTTATAA
*
18444766 TTTTTATGA
1 TTTTTATAA
18444775 TTTT
1 TTTT
18444779 CAAGGGAAAA
Statistics
Matches: 174, Mismatches: 26, Indels: 58
0.67 0.10 0.22
Matches are distributed among these distances:
7 16 0.09
8 41 0.24
9 55 0.32
10 46 0.26
11 14 0.08
12 2 0.01
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:18444613 original size:20 final size:21
Alignment explanation
Indices: 18444580--18444619 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
18444570 TAATATTTTT
*
18444580 ATTTTTTAAGAATTTTAATAC
1 ATTTTTTAAGAATTTAAATAC
18444601 ATTTTTTAA-AATTTAAATA
1 ATTTTTTAAGAATTTAAATA
18444620 TTTTAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (21 bp):
ATTTTTTAAGAATTTAAATAC
Found at i:18444777 original size:19 final size:17
Alignment explanation
Indices: 18444631--18444778 Score: 70
Period size: 19 Copynumber: 8.2 Consensus size: 17
18444621 TTTAAATAAG
*
18444631 TTTTACTAATTTTATAAAT
1 TTTTA-TAATTTT-TATAT
* *
18444650 TTTTTTAATTTATTAGAAT
1 TTTTATAATTT-TTA-TAT
18444669 TTTTAT-ATTTTTATAAT
1 TTTTATAATTTTTAT-AT
*
18444686 ATTTATAAGTTTTTATAT
1 TTTTATAA-TTTTTATAT
* * *
18444704 TTTTATTAAGTTTGTGTGAA
1 TTTTA-TAA-TTTTTAT-AT
*
18444724 TTTTA-AAATTTTA-AT
1 TTTTATAATTTTTATAT
*
18444739 TTTT-TAATATTTAATAATT
1 TTTTATAAT-TTTTAT-A-T
18444758 TTTTATAATTTTTATGAT
1 TTTTATAATTTTTAT-AT
18444776 TTT
1 TTT
18444779 CAAGGGAAAA
Statistics
Matches: 100, Mismatches: 16, Indels: 27
0.70 0.11 0.19
Matches are distributed among these distances:
15 7 0.07
16 4 0.04
17 13 0.13
18 26 0.26
19 40 0.40
20 10 0.10
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.63
Consensus pattern (17 bp):
TTTTATAATTTTTATAT
Found at i:18445165 original size:16 final size:17
Alignment explanation
Indices: 18445125--18445166 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
18445115 AGTGTAAAAC
*
18445125 TATTAAAAATTATAAAT
1 TATTAAAAATAATAAAT
* *
18445142 GATAAAAAATAAT-AAT
1 TATTAAAAATAATAAAT
18445158 TATTAAAAA
1 TATTAAAAA
18445167 AATTTAAACT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
TATTAAAAATAATAAAT
Found at i:18449840 original size:9 final size:9
Alignment explanation
Indices: 18449822--18449874 Score: 56
Period size: 9 Copynumber: 5.8 Consensus size: 9
18449812 ATCAATAAAT
18449822 AATT-TTAA
1 AATTATTAA
18449830 AATTATTAA
1 AATTATTAA
18449839 AATTATTTTTAA
1 AATTA---TTAA
*
18449851 AAATA-TAA
1 AATTATTAA
18449859 AATTATTAA
1 AATTATTAA
18449868 AATTATT
1 AATTATT
18449875 TTTTGAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
8 11 0.29
9 19 0.50
12 8 0.21
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
AATTATTAA
Found at i:18449846 original size:20 final size:20
Alignment explanation
Indices: 18449818--18449874 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
18449808 CCATATCAAT
*
18449818 AAATAATTTTAAAATTATTA
1 AAATTATTTTAAAATTATTA
*
18449838 AAATTATTTTTAAAAATA-TA
1 AAATTA-TTTTAAAATTATTA
18449858 AAATTA--TTAAAATTATT
1 AAATTATTTTAAAATTATT
18449875 TTTTGAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.25
18 1 0.03
20 13 0.41
21 10 0.31
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AAATTATTTTAAAATTATTA
Found at i:18449859 original size:29 final size:30
Alignment explanation
Indices: 18449827--18449896 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 30
18449817 TAAATAATTT
18449827 TAAAATTATTAAAATTATTTTTAAAAAT-A
1 TAAAATTATTAAAATTATTTTTAAAAATAA
**
18449856 TAAAATTATTAAAATTATTTTTTGAAATAA
1 TAAAATTATTAAAATTATTTTTAAAAATAA
18449886 TAAAATTATTA
1 TAAAATTATTA
18449897 GATAATTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 26 0.68
30 12 0.32
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (30 bp):
TAAAATTATTAAAATTATTTTTAAAAATAA
Found at i:18449904 original size:29 final size:29
Alignment explanation
Indices: 18449827--18449905 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
18449817 TAAATAATTT
*
18449827 TAAAATTATTAA-AATTATTTTTAAAAATA
1 TAAAATTATTAATAATT-TTTTGAAAAATA
* *
18449856 TAAAATTATTAAAATTATTTTTTGAAATA-A
1 TAAAATTATT--AATAATTTTTTGAAAAATA
18449886 TAAAATTATTAGATAATTTT
1 TAAAATTATTA-ATAATTTT
18449906 AATTTCCAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
28 1 0.02
29 17 0.40
30 11 0.26
31 10 0.24
32 3 0.07
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (29 bp):
TAAAATTATTAATAATTTTTTGAAAAATA
Found at i:18450995 original size:29 final size:29
Alignment explanation
Indices: 18450962--18451038 Score: 136
Period size: 29 Copynumber: 2.7 Consensus size: 29
18450952 AAAATTATTT
18450962 AATAATTTTAATAATTTTATATTTTAAAA
1 AATAATTTTAATAATTTTATATTTTAAAA
* *
18450991 AATAATTTAAAAAATTTTATATTTTAAAA
1 AATAATTTTAATAATTTTATATTTTAAAA
18451020 AATAATTTTAATAATTTTA
1 AATAATTTTAATAATTTTA
18451039 AAATTATGTG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
AATAATTTTAATAATTTTATATTTTAAAA
Found at i:18451028 original size:20 final size:21
Alignment explanation
Indices: 18450999--18451041 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
18450989 AAAATAATTT
18450999 AAAAAATTTT-AT-ATTTTAA
1 AAAAAATTTTAATAATTTTAA
18451018 AAAATAATTTTAATAATTTTAA
1 AAAA-AATTTTAATAATTTTAA
18451040 AA
1 AA
18451042 TTATGTGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 6 0.29
21 2 0.10
22 9 0.43
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AAAAAATTTTAATAATTTTAA
Found at i:18451593 original size:29 final size:28
Alignment explanation
Indices: 18451560--18451618 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
18451550 AATTTACAGG
*
18451560 AATTAAATC-AAATCAAAATTTCATGTATA
1 AATTAAA-CAAAATC-AAAGTTCATGTATA
*
18451589 AATTACACAAAATCAAAGTTCATGTATA
1 AATTAAACAAAATCAAAGTTCATGTATA
18451617 AA
1 AA
18451619 ATTGATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 16 0.59
29 11 0.41
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.31
Consensus pattern (28 bp):
AATTAAACAAAATCAAAGTTCATGTATA
Found at i:18459137 original size:26 final size:26
Alignment explanation
Indices: 18459089--18459138 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
18459079 CGAATTTCAA
* *
18459089 TTTTTTAAAGATAATATGCTATTTAC
1 TTTTTAAAAGATAATAAGCTATTTAC
* *
18459115 TTTTTAAAAGGTAATAAGGTATTT
1 TTTTTAAAAGATAATAAGCTATTT
18459139 TCAAAATTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.12, T:0.48
Consensus pattern (26 bp):
TTTTTAAAAGATAATAAGCTATTTAC
Found at i:18462482 original size:20 final size:20
Alignment explanation
Indices: 18462440--18462478 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
18462430 TATATCTTGT
* *
18462440 TTAAAATTTTTGTTATCGTA
1 TTAAAATTTTTCTTATAGTA
18462460 TTAAAA-TTTTCTTATAGTA
1 TTAAAATTTTTCTTATAGTA
18462479 ATTACTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (20 bp):
TTAAAATTTTTCTTATAGTA
Found at i:18464850 original size:22 final size:24
Alignment explanation
Indices: 18464810--18464855 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
18464800 ATAAATTTAA
*
18464810 TTTTTAAAAATAATGTTTATAATT
1 TTTTTAAAAATAATGTTTAAAATT
*
18464834 TTTTTTAAAA-AAT-TTTAAAATT
1 TTTTTAAAAATAATGTTTAAAATT
18464856 AAAAATAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 3 0.15
24 9 0.45
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
TTTTTAAAAATAATGTTTAAAATT
Found at i:18467818 original size:29 final size:29
Alignment explanation
Indices: 18467760--18467821 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
18467750 GAAATTGAAG
* * * *
18467760 TTTTGGAGAATTTTGGGGTTAAATATTAA
1 TTTTGGAAAATTTGGGGGTCAAATAGTAA
18467789 TTTTGGAAAAATTTGGGGGTCAAAT-GTAA
1 TTTTGG-AAAATTTGGGGGTCAAATAGTAA
18467818 TTTT
1 TTTT
18467822 TAAATAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 13 0.46
30 15 0.54
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.44
Consensus pattern (29 bp):
TTTTGGAAAATTTGGGGGTCAAATAGTAA
Found at i:18469893 original size:124 final size:122
Alignment explanation
Indices: 18469604--18469947 Score: 451
Period size: 124 Copynumber: 2.8 Consensus size: 122
18469594 GTGTTTGTAA
* * * * ** *
18469604 CTTCATCT-TTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACAACTTTATTACTTTGACCC
1 CTTCAT-TGTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACCTCATTGTTTTGATCC
**
18469668 ACTTCTCTGTATCTCATCAGGAAGATGGAATTTGAAATTTCTCTTGCATTGAACTTCG
65 ACTTCTCTGTATCTCATCAGGAAGATGGAATTTGAAATTTCTCTCACATTGAACTTCG
18469726 CTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACCTCATTGTTTTGATCC
1 CTTCATTG-TTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACCTCATTGTTTTGATCC
* * ** * *
18469791 ACTTCTCTGTATATCATCAAGAAGATAGGGGTTTGAAGTTT-TACTCACATTTGAGCTTCG
65 ACTTCTCTGTATCTCATCAGGAAGAT-GGAATTTGAAATTTCT-CTCACA-TTGAACTTCG
* *
18469851 CTTCATTGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTGATCCA
1 CTTCATTGTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACCTCATTGTTTTGATCCA
* *
18469916 CTTCTTTGTATCTCATCAGGAAGACGG-ATTTG
66 CTTCTCTGTATCTCATCAGGAAGATGGAATTTG
18469948 GTCTACTTCT
Statistics
Matches: 195, Mismatches: 22, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
121 1 0.01
122 10 0.05
123 76 0.39
124 91 0.47
125 17 0.09
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.39
Consensus pattern (122 bp):
CTTCATTGTTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACCTCATTGTTTTGATCCA
CTTCTCTGTATCTCATCAGGAAGATGGAATTTGAAATTTCTCTCACATTGAACTTCG
Found at i:18469926 original size:48 final size:46
Alignment explanation
Indices: 18469853--18470111 Score: 167
Period size: 48 Copynumber: 5.9 Consensus size: 46
18469843 GAGCTTCGCT
* *
18469853 TCATTGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCC
1 TCATTGTTTGATCCACTTCTTTGTATCTCATCAGGAAGATGACCG-C
18469900 TCATTGTTTTGATCCACTTCTTTGTATCTCATCAGG-A-A-GA-CG-
1 TCATTG-TTTGATCCACTTCTTTGTATCTCATCAGGAAGATGACCGC
* * * * *
18469942 -GA---TTTGGTCTACTTCTGTGTATCTCATCAGAAAGATGACCGC
1 TCATTGTTTGATCCACTTCTTTGTATCTCATCAGGAAGATGACCGC
* *
18469984 TTTATTGCTTTGATCCAATTCTTTGTATCTCATCAGG-A-A-GA-CG-
1 -TCATTG-TTTGATCCACTTCTTTGTATCTCATCAGGAAGATGACCGC
* * * * *
18470027 T-A---TTTGGTTCACTTCTCTGTATCTAATCAGGAAGATGACTGC
1 TCATTGTTTGATCCACTTCTTTGTATCTCATCAGGAAGATGACCGC
* * * * *
18470069 TTTATTACTTTGACCCACTTCTCTGTATCTTATCAGGAAGATG
1 -TCATT-GTTTGATCCACTTCTTTGTATCTCATCAGGAAGATG
18470112 GGGCTTGAAG
Statistics
Matches: 166, Mismatches: 23, Indels: 45
0.71 0.10 0.19
Matches are distributed among these distances:
37 49 0.30
38 2 0.01
39 2 0.01
40 4 0.02
41 5 0.03
42 1 0.01
43 1 0.01
44 6 0.04
45 4 0.02
46 2 0.01
47 8 0.05
48 82 0.49
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (46 bp):
TCATTGTTTGATCCACTTCTTTGTATCTCATCAGGAAGATGACCGC
Found at i:18469966 original size:85 final size:85
Alignment explanation
Indices: 18469859--18470109 Score: 360
Period size: 85 Copynumber: 3.0 Consensus size: 85
18469849 CGCTTCATTG
* * * *
18469859 TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTGATCCACTTCTTTG
1 TTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGATCCACTTCTTTG
18469924 TATCTCATCAGGAAGACGGA
66 TATCTCATCAGGAAGACGGA
* * *
18469944 TTTGGTCTACTTCTGTGTATCTCATCAGAAAGATGACCGCTTTATTGCTTTGATCCAATTCTTTG
1 TTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGATCCACTTCTTTG
*
18470009 TATCTCATCAGGAAGACGTA
66 TATCTCATCAGGAAGACGGA
* * * * *
18470029 TTTGGT-TCACTTCTCTGTATCTAATCAGGAAGATGACTGCTTTATTACTTTGACCCACTTCTCT
1 TTTGGTCT-ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGATCCACTTCTTT
*
18470093 GTATCTTATCAGGAAGA
65 GTATCTCATCAGGAAGA
18470110 TGGGGCTTGA
Statistics
Matches: 148, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
84 1 0.01
85 147 0.99
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.38
Consensus pattern (85 bp):
TTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGATCCACTTCTTTG
TATCTCATCAGGAAGACGGA
Found at i:18470312 original size:124 final size:124
Alignment explanation
Indices: 18470029--18470603 Score: 715
Period size: 124 Copynumber: 4.7 Consensus size: 124
18470019 GGAAGACGTA
* * *
18470029 TTTGGT-TCACTTCTCTGTATCTAATCAGGAAGATGACTGCTTTATTACTTTGACCCACTTCTCT
1 TTTGGTCT-ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTATTTTGACCCACTTCTCT
* * * *
18470093 GTATCTTATCAGGAAGAT-GGGGCTTGAAGTTTCACTGACATTGAGTTTCGCTTCATTGA
65 GTATCTTATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGT
* * * * *
18470152 TTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACTGCTTCATCATTTTGATCCACTTCTCTG
1 TTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTATTTTGACCCACTTCTCTG
* * * *
18470217 TATCTTATTAGGAAGATGGGGGTGTGAAGTTTCACTCACGTTGAGCTTTGCTTCATTGT
66 TATCTTATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGT
* * * * *
18470276 TTTGGTCTACTTCTTTGTATCTCATTAGGAAAATGACCACTTTATTGTTTTGACCCACTTCTCTG
1 TTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTATTTTGACCCACTTCTCTG
* * * * * * *
18470341 TATCTTATCAGGAAAATGGAGTTTTGAAGTTTCATTCACATTGAGCTCCGTTTCATTAT
66 TATCTTATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGT
* * * * *
18470400 TTTGGTCCAGTTCTCTGTATCTCATCAAGAAGATGACCGTTTTATTATTTTGACCCACTTCTCTA
1 TTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTATTTTGACCCACTTCTCTG
* * * *
18470465 TATCTCATCAGAAAGAT-GGGGTTTGAAGTTTCACTCGCATTAAGCTTCGCTTCATTGT
66 TATCTTATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGT
* * * * * **
18470523 TTTGGTCTACTTCTCTGTATCTCATTAGAAAAATGACCACTTCATTATTTTGGTCCACTTCTCTG
1 TTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTATTTTGACCCACTTCTCTG
*
18470588 TATCTTATTAGGAAGA
66 TATCTTATCAGGAAGA
18470604 CGAATTTGGT
Statistics
Matches: 379, Mismatches: 71, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
123 172 0.45
124 207 0.55
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (124 bp):
TTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTATTTTGACCCACTTCTCTG
TATCTTATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGT
Found at i:18470462 original size:48 final size:48
Alignment explanation
Indices: 18470388--18470482 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
18470378 ACATTGAGCT
** * *
18470388 CCGTTTCATTATTTTGGTCCAGTTCTCTGTATCTCATCA-AGAAGATGA
1 CCGTTTCATTATTTTGACCCACTTCTCTATATCTCATCAGA-AAGATGA
*
18470436 CCGTTTTATTATTTTGACCCACTTCTCTATATCTCATCAGAAAGATG
1 CCGTTTCATTATTTTGACCCACTTCTCTATATCTCATCAGAAAGATG
18470483 GGGTTTGAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
48 40 0.98
49 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (48 bp):
CCGTTTCATTATTTTGACCCACTTCTCTATATCTCATCAGAAAGATGA
Found at i:18470525 original size:247 final size:247
Alignment explanation
Indices: 18470029--18470601 Score: 747
Period size: 247 Copynumber: 2.3 Consensus size: 247
18470019 GGAAGACGTA
* * * ** *
18470029 TTTGGT-TCACTTCTCTGTATCTAATCAGGAAGATGACTGCTTTATTACTTTGACCCACTTCTCT
1 TTTGGTCT-ACTTCTCTGTATCTCATTAGGAAAATGACCACTTTATTATTTTGACCCACTTCTCT
* * * *
18470093 GTATCTTATCAGGAAGATGGGGCTTGAAGTTTCACTGACATTGAGTTTCGCTTCATTGATTTGGT
65 GTATCTTATCAGGAAAATGGGGCTTGAAGTTTCACTCACATTGAGCTCCGCTTCATTGATTTGGT
* * * * * *
18470158 CTACTTCTCTATATCTCATCAGGAAGATGACTGCTTCATCATTTTGATCCACTTCTCTGTATCTT
130 CCACTTCTCTATATCTCATCAAGAAGATGACCGCTTCATCATTTTGACCCACTTCTCTATATCTC
* * * * *
18470223 ATTAGGAAGATGGGGGTGTGAAGTTTCACTCACGTTGAGCTTTGCTTCATTGT
195 ATCAGAAAGATGGGGGTGTGAAGTTTCACTCACATTAAGCTTCGCTTCATTGT
* *
18470276 TTTGGTCTACTTCTTTGTATCTCATTAGGAAAATGACCACTTTATTGTTTTGACCCACTTCTCTG
1 TTTGGTCTACTTCTCTGTATCTCATTAGGAAAATGACCACTTTATTATTTTGACCCACTTCTCTG
** * *
18470341 TATCTTATCAGGAAAATGGAGTTTTGAAGTTTCATTCACATTGAGCTCCGTTTCATT-ATTTTGG
66 TATCTTATCAGGAAAATGG-GGCTTGAAGTTTCACTCACATTGAGCTCCGCTTCATTGA-TTTGG
* * * * *
18470405 TCCAGTTCTCTGTATCTCATCAAGAAGATGACCGTTTTATTATTTTGACCCACTTCTCTATATCT
129 TCCACTTCTCTATATCTCATCAAGAAGATGACCGCTTCATCATTTTGACCCACTTCTCTATATCT
* *
18470470 CATCAGAAAGAT-GGGGTTTGAAGTTTCACTCGCATTAAGCTTCGCTTCATTGT
194 CATCAGAAAGATGGGGGTGTGAAGTTTCACTCACATTAAGCTTCGCTTCATTGT
* * **
18470523 TTTGGTCTACTTCTCTGTATCTCATTAGAAAAATGACCACTTCATTATTTTGGTCCACTTCTCTG
1 TTTGGTCTACTTCTCTGTATCTCATTAGGAAAATGACCACTTTATTATTTTGACCCACTTCTCTG
*
18470588 TATCTTATTAGGAA
66 TATCTTATCAGGAA
18470602 GACGAATTTG
Statistics
Matches: 282, Mismatches: 41, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
247 182 0.65
248 100 0.35
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (247 bp):
TTTGGTCTACTTCTCTGTATCTCATTAGGAAAATGACCACTTTATTATTTTGACCCACTTCTCTG
TATCTTATCAGGAAAATGGGGCTTGAAGTTTCACTCACATTGAGCTCCGCTTCATTGATTTGGTC
CACTTCTCTATATCTCATCAAGAAGATGACCGCTTCATCATTTTGACCCACTTCTCTATATCTCA
TCAGAAAGATGGGGGTGTGAAGTTTCACTCACATTAAGCTTCGCTTCATTGT
Found at i:18470666 original size:85 final size:85
Alignment explanation
Indices: 18470523--18470773 Score: 333
Period size: 85 Copynumber: 3.0 Consensus size: 85
18470513 GCTTCATTGT
* * * * * * *
18470523 TTTGGTCTACTTCTCTGTATCTCATTAGAAAAATGACCACTTCATTATTTTGGTCCACTTCTCTG
1 TTTGGTCCACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTATTACTTTGATCCACTTCTCTG
* *
18470588 TATCTTATTAGGAAGACGAA
66 TATCTCATCAGGAAGACGAA
* * * *
18470608 TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGATCCACTTCTCTA
1 TTTGGTCCACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTATTACTTTGATCCACTTCTCTG
* *
18470673 TATCTCATCAAGAAGACGGA
66 TATCTCATCAGGAAGACGAA
* *
18470693 TTTGTTCCACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTATTACTTTGA-CGTACTTCTCT
1 TTTGGTCCACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTATTACTTTGATC-CACTTCTCT
18470757 GTATCTCATCAGGAAGA
65 GTATCTCATCAGGAAGA
18470774 TGGAGTTTGA
Statistics
Matches: 143, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
84 1 0.01
85 142 0.99
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (85 bp):
TTTGGTCCACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTATTACTTTGATCCACTTCTCTG
TATCTCATCAGGAAGACGAA
Found at i:18470876 original size:48 final size:48
Alignment explanation
Indices: 18470805--18470898 Score: 125
Period size: 48 Copynumber: 2.0 Consensus size: 48
18470795 CATTGAACTT
* * * * *
18470805 CGCTTCATTGATTTGCTCTACTTCTCTGTATCTCGTCAAGAAGATGAC
1 CGCTTCATCGATTTGATCCACTTCTCTGTATATCATCAAGAAGATGAC
* *
18470853 CGCTTCATCGTTTTGATCCACTTCTCTGTATATCATCAGGAAGATG
1 CGCTTCATCGATTTGATCCACTTCTCTGTATATCATCAAGAAGATG
18470899 GGGGTGTGAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (48 bp):
CGCTTCATCGATTTGATCCACTTCTCTGTATATCATCAAGAAGATGAC
Found at i:18470879 original size:664 final size:665
Alignment explanation
Indices: 18469603--18471072 Score: 2024
Period size: 664 Copynumber: 2.2 Consensus size: 665
18469593 GGTGTTTGTA
* * *
18469603 ACTTCA-TCTTTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACAACTTTATTACTTTGACC
1 ACTTCATTATTTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACTTTATTATTTTGACC
* ** * * *
18469667 CACTTCTCTGTATCTCATCAGGAAGATGGA-ATTTGAAATTTC-TCTTGCATTGAACTTCGCTTC
66 CACTTCTCTGTATCTCATCAGGAAGATGGAGATTTGAAGTTTCAT-TCACATTGAGCTCCGTTTC
* * * *
18469730 ATTGA-TTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACCTCATTGTTTTGATCCACT
130 ATT-ATTTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCACCTCATTATTTTGACCCACT
* * *
18469794 TCTCTGTATATCATCAAGAAGATAGGGGTTTGAAGTTTTACTCACATTTGAGCTTCGCTTCATTG
194 TCTCTATATATCATCAAGAAGATAGGGGTTTGAAGTTTCACTCACATTTAAGCTTCGCTTCATTG
* * * * *
18469859 TTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTGATCCACTTCTTTG
259 TTTGGTCCACTTCTCTGTATCTCATCAGAAAAATGACCACCTCATTATTTTGATCCACTTCTCTG
* * *
18469924 TATCTCATCAGGAAGACGGATTTGGTCTACTTCTGTGTATCTCATCAGAAAGATGACCGCTTTAT
324 TATCTCATCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTTAT
* * * *
18469989 TGCTTTGATCCAATTCTTTGTATCTCATCAGGAAGACGTATTTGGTTCACTTCTCTGTATCTAAT
389 TGCTTTGATCCAATTCTCTATATCTCATCAAGAAGACGGATTTGGTTCACTTCTCTGTATCTAAT
* * *
18470054 CAGGAAGATGACTGCTTTATTACTTTGACCCACTTCTCTGTATCTTATCAGGAAGATGGGGCTTG
454 CAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGAGCTTG
** * *
18470119 AAGTTTCACTGACATTGAGTTTCGCTTCATTGATTTGGTCTACTTCTCTATATCTCATCAGGAAG
519 AAGTTTCACTGACATTGAACTTCGCTTCATTGATTTGCTCTACTTCTCTATATCTCATCAAGAAG
* * * *
18470184 ATGACTGCTTCATCATTTTGATCCACTTCTCTGTATCTTATTAGGAAGATGGGGGTGTGAAGTTT
584 ATGACCGCTTCATCATTTTGATCCACTTCTCTGTATATCATCAGGAAGATGGGGGTGTGAAGTTT
18470249 CACTCACGTTGAGCTTT-
649 CACTCACGTTGAG-TTTC
* * * * * * *
18470266 GCTTCATTGTTTTGGTCTACTTCTTTGTATCTCATTAGGAAAATGACCACTTTATTGTTTTGACC
1 ACTTCATTATTTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACTTTATTATTTTGACC
* * *
18470331 CACTTCTCTGTATCTTATCAGGAAAATGGAGTTTTGAAGTTTCATTCACATTGAGCTCCGTTTCA
66 CACTTCTCTGTATCTCATCAGGAAGATGGAGATTTGAAGTTTCATTCACATTGAGCTCCGTTTCA
* *** *
18470396 TTATTTTGGTCCAGTTCTCTGTATCTCATCAAGAAGATGACCGTTTTATTATTTTGACCCACTTC
131 TTATTTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCACCTCATTATTTTGACCCACTTC
* *
18470461 TCTATATCTCATC-AGAAAGAT-GGGGTTTGAAGTTTCACTCGCA-TTAAGCTTCGCTTCATTGT
196 TCTATATATCATCAAG-AAGATAGGGGTTTGAAGTTTCACTCACATTTAAGCTTCGCTTCATTG-
* * * *
18470523 TTTGGTCTACTTCTCTGTATCTCATTAGAAAAATGACCACTTCATTATTTTGGTCCACTTCTCTG
259 TTTGGTCCACTTCTCTGTATCTCATCAGAAAAATGACCACCTCATTATTTTGATCCACTTCTCTG
* * * *
18470588 TATCTTATTAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTAT
324 TATCTCATCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTTAT
* *
18470653 TGCTTTGATCCACTTCTCTATATCTCATCAAGAAGACGGATTT-GTTCCACTTCTCTGTATCTCA
389 TGCTTTGATCCAATTCTCTATATCTCATCAAGAAGACGGATTTGGTT-CACTTCTCTGTATCTAA
* ** *
18470717 TTAGGAAGATGACCGCTTTATTACTTTGACGTACTTCTCTGTATCTCATCAGGAAGATGGAGTTT
453 TCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGAGCTT
* * *
18470782 GAAGTTTCACTTACATTGAACTTCGCTTCATTGATTTGCTCTACTTCTCTGTATCTCGTCAAGAA
518 GAAGTTTCACTGACATTGAACTTCGCTTCATTGATTTGCTCTACTTCTCTATATCTCATCAAGAA
*
18470847 GATGACCGCTTCATCGTTTTGATCCACTTCTCTGTATATCATCAGGAAGATGGGGGTGTGAAGTT
583 GATGACCGCTTCATCATTTTGATCCACTTCTCTGTATATCATCAGGAAGATGGGGGTGTGAAGTT
18470912 TCACTCACGTTGAGTTTC
648 TCACTCACGTTGAGTTTC
* * * * * * * *
18470930 ACTTCATTATTTTGGTCCATTTCTCTATATCTCATCAAGAAGATGATCGCTTCATCATTTTGATC
1 ACTTCATTATTTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACTTTATTATTTTGACC
* * * * *
18470995 CACTTCTCTGTATCTCATCAGGAAGATAGAGGTTTGAAGTTTCACTCACGTTGAGCTCCACTTT-
66 CACTTCTCTGTATCTCATCAGGAAGATGGAGATTTGAAGTTTCATTCACATTGAGCTCC-GTTTC
18471059 ATTATTTTGGTCCA
130 ATTATTTTGGTCCA
18471073 TGATATCATT
Statistics
Matches: 703, Mismatches: 95, Indels: 17
0.86 0.12 0.02
Matches are distributed among these distances:
663 28 0.04
664 576 0.82
665 98 0.14
666 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (665 bp):
ACTTCATTATTTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACTTTATTATTTTGACC
CACTTCTCTGTATCTCATCAGGAAGATGGAGATTTGAAGTTTCATTCACATTGAGCTCCGTTTCA
TTATTTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCACCTCATTATTTTGACCCACTTC
TCTATATATCATCAAGAAGATAGGGGTTTGAAGTTTCACTCACATTTAAGCTTCGCTTCATTGTT
TGGTCCACTTCTCTGTATCTCATCAGAAAAATGACCACCTCATTATTTTGATCCACTTCTCTGTA
TCTCATCAGGAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTTATTG
CTTTGATCCAATTCTCTATATCTCATCAAGAAGACGGATTTGGTTCACTTCTCTGTATCTAATCA
GGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGAGCTTGAA
GTTTCACTGACATTGAACTTCGCTTCATTGATTTGCTCTACTTCTCTATATCTCATCAAGAAGAT
GACCGCTTCATCATTTTGATCCACTTCTCTGTATATCATCAGGAAGATGGGGGTGTGAAGTTTCA
CTCACGTTGAGTTTC
Done.