Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 70 of 132
Found at i:20022930 original size:22 final size:22
Alignment explanation
Indices: 20022905--20022957 Score: 90
Period size: 22 Copynumber: 2.4 Consensus size: 22
20022895 TAAAATTCTA
20022905 TCAACAAGT-TCCAAACAATGAT
1 TCAACAA-TCTCCAAACAATGAT
20022927 TCAACAATCTCCAAACAATGAT
1 TCAACAATCTCCAAACAATGAT
20022949 TCAACAATC
1 TCAACAATC
20022958 AAAATGGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 1 0.03
22 29 0.97
ACGTcount: A:0.45, C:0.26, G:0.06, T:0.23
Consensus pattern (22 bp):
TCAACAATCTCCAAACAATGAT
Found at i:20023765 original size:12 final size:12
Alignment explanation
Indices: 20023748--20023772 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20023738 TATAGCAACT
20023748 AAACTAATTACC
1 AAACTAATTACC
20023760 AAACTAATTACC
1 AAACTAATTACC
20023772 A
1 A
20023773 GGAGTGTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (12 bp):
AAACTAATTACC
Found at i:20025426 original size:288 final size:287
Alignment explanation
Indices: 20024910--20025484 Score: 1114
Period size: 288 Copynumber: 2.0 Consensus size: 287
20024900 GGAACATGCA
20024910 AGCTCAACCATGCAGTTTATTTTGTTTCTTAGCTTAGTTAGTTTCAGTTTGTTTGTAATGCATTT
1 AGCTCAACCATGCAGTTTATTTTGTTTCTTAGCTTAGTTAGTTTCAGTTTGTTTGTAATGCATTT
*
20024975 TGGATAGGATCAAAGTCTAATTGACAGATTAGAATGATTACTTTTTGTTGTTTAGGTGATGATTT
66 TGGATAAGATCAAAGTCTAATTGACAGATTAGAATGATTACTTTTTGTTGTTTAGGTGATGATTT
20025040 AAGCTGATAAGTCAGCTTGTTTATTTGTACAAGTTAAGTCATGTCATTTTCTATGTAATTAGTGG
131 AAGCTGATAAGTCAGCTTGTTTATTTGTACAAGTTAAGTCATGTCATTTTCTATGTAATTAGTGG
20025105 GGTTAGTAAATTAATTGTTGACAGCTTTGTTAGTGTTGTAAGTATATATCAGTTTTATTTCTTAA
196 GGTTAGTAAATTAATTGTTGACAGCTTTGTTAGTGTTGTAAGTATATATCAGTTTTATTTCTTAA
*
20025170 TCAAATTATCTGATCAGTTTTGATCAAT
261 TCAAATTATC-AATCAGTTTTGATCAAT
*
20025198 AGCTCAACCATGCTGTTTATTTTGTTTCTTAGCTTAGTTAGTTTCAGTTTGTTTGTAATGCATTT
1 AGCTCAACCATGCAGTTTATTTTGTTTCTTAGCTTAGTTAGTTTCAGTTTGTTTGTAATGCATTT
20025263 TGGATAAGATCAAAGTCTAATTGACAGATTAGAATGATTACTTTTTGTTGTTTAGGTGATGATTT
66 TGGATAAGATCAAAGTCTAATTGACAGATTAGAATGATTACTTTTTGTTGTTTAGGTGATGATTT
20025328 AAGCTGATAAGTCAGCTTGTTTATTTGTACAAGTTAAGTCATGTCATTTTCTATGTAATTAGTGG
131 AAGCTGATAAGTCAGCTTGTTTATTTGTACAAGTTAAGTCATGTCATTTTCTATGTAATTAGTGG
20025393 GGTTAGTAAATTAATTGTTGACAGCTTTGTTAGTGTTGTAAGTATATATCAGTTTTATTTCTTAA
196 GGTTAGTAAATTAATTGTTGACAGCTTTGTTAGTGTTGTAAGTATATATCAGTTTTATTTCTTAA
20025458 TCAAATTATCAATCAGTTTTGATCAAT
261 TCAAATTATCAATCAGTTTTGATCAAT
20025485 TTTTCCCTCG
Statistics
Matches: 284, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
287 16 0.06
288 268 0.94
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (287 bp):
AGCTCAACCATGCAGTTTATTTTGTTTCTTAGCTTAGTTAGTTTCAGTTTGTTTGTAATGCATTT
TGGATAAGATCAAAGTCTAATTGACAGATTAGAATGATTACTTTTTGTTGTTTAGGTGATGATTT
AAGCTGATAAGTCAGCTTGTTTATTTGTACAAGTTAAGTCATGTCATTTTCTATGTAATTAGTGG
GGTTAGTAAATTAATTGTTGACAGCTTTGTTAGTGTTGTAAGTATATATCAGTTTTATTTCTTAA
TCAAATTATCAATCAGTTTTGATCAAT
Found at i:20026327 original size:12 final size:12
Alignment explanation
Indices: 20026310--20026334 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20026300 AGAGGCAGAG
20026310 AAAGCTCAAGCT
1 AAAGCTCAAGCT
20026322 AAAGCTCAAGCT
1 AAAGCTCAAGCT
20026334 A
1 A
20026335 CAAGGGAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.16
Consensus pattern (12 bp):
AAAGCTCAAGCT
Found at i:20031889 original size:13 final size:13
Alignment explanation
Indices: 20031873--20031897 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20031863 AATCTCCTAA
20031873 ATTTTATATTTTT
1 ATTTTATATTTTT
20031886 ATTTTATATTTT
1 ATTTTATATTTT
20031898 CTAAATTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTTATATTTTT
Found at i:20037988 original size:12 final size:12
Alignment explanation
Indices: 20037973--20037997 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20037963 GTTACTTACT
20037973 TCACAGCTTAGC
1 TCACAGCTTAGC
20037985 TCACAGCTTAGC
1 TCACAGCTTAGC
20037997 T
1 T
20037998 GACCTACAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (12 bp):
TCACAGCTTAGC
Found at i:20052399 original size:192 final size:192
Alignment explanation
Indices: 20052064--20052495 Score: 587
Period size: 192 Copynumber: 2.2 Consensus size: 192
20052054 CAATGTTGCT
* * * * *
20052064 CACACGAGCTATCGAGGACACGCAACATATGCGGTACCCCAGCCATTGGTACGGTGTTTGTCTGT
1 CACATGAGCTATCGAGGACTCGCAACATATGCGGTACCCCAGCCATCGATACGGTGTCTGTCTGT
* * *
20052129 AAACTGTCCCCTAACGATGCTGCTCACATGAGCAGTCGAGACTATGCATTTAAGCATAAATCCCA
66 AAACTGTCCCCTAACGATGCTGCTCACAAGAGCAGTCGAGAATATGCATTTAAGCACAAATCCCA
* * ** *
20052194 ATCATCATAGGGCCTATAATCCATTTAGGATTCATATCTTTTTTTTGACTCATGATGCTACC
131 ACCATCATAGGGCCTATAATCCATTTAGGATTCATATCTCTTTTTCAACTCACGATGCTACC
* * * *
20052256 CATATGAGCTATCGAGGTCTCACAACATATGCGGTACCCTAGCCATCGATACGGTGTCTGTCTGT
1 CACATGAGCTATCGAGGACTCGCAACATATGCGGTACCCCAGCCATCGATACGGTGTCTGTCTGT
* * * *
20052321 AAACTGTCCCCTAACGATGCTTCTCACAAGAGCTGTCGAGAATATGCATTTTAA-TACAAATCTC
66 AAACTGTCCCCTAACGATGCTGCTCACAAGAGCAGTCGAGAATATGCA-TTTAAGCACAAATCCC
* * * * *
20052385 AACCATCGTAGGGCCTTTAATCTATTTAGGATTCATATCTCTTTTTCAATTCACGATGCTACT
130 AACCATCATAGGGCCTATAATCCATTTAGGATTCATATCTCTTTTTCAACTCACGATGCTACC
* * *
20052448 CACATGAGCTGTCGAGGACTCGTAACATATGCGGTACCCCAACCATCG
1 CACATGAGCTATCGAGGACTCGCAACATATGCGGTACCCCAGCCATCG
20052496 CGTCGGTTTC
Statistics
Matches: 206, Mismatches: 33, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
192 201 0.98
193 5 0.02
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (192 bp):
CACATGAGCTATCGAGGACTCGCAACATATGCGGTACCCCAGCCATCGATACGGTGTCTGTCTGT
AAACTGTCCCCTAACGATGCTGCTCACAAGAGCAGTCGAGAATATGCATTTAAGCACAAATCCCA
ACCATCATAGGGCCTATAATCCATTTAGGATTCATATCTCTTTTTCAACTCACGATGCTACC
Found at i:20059325 original size:17 final size:17
Alignment explanation
Indices: 20059293--20059335 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
20059283 ACTAAATTCT
*
20059293 AATGACAAATGGAAATAC
1 AATGAC-AATGCAAATAC
**
20059311 AATGACAATGCAAATGT
1 AATGACAATGCAAATAC
20059328 AATGACAA
1 AATGACAA
20059336 CGGGAATGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (17 bp):
AATGACAATGCAAATAC
Found at i:20066932 original size:481 final size:481
Alignment explanation
Indices: 20066030--20066993 Score: 1883
Period size: 481 Copynumber: 2.0 Consensus size: 481
20066020 TGAAGAAACT
*
20066030 TGCGCACTCAGAGCAGATATAGCATCCAATTCAATAACTCCAGGATTGGATTTTACTTGTGCAGC
1 TGCGCACTCAGAGCAGATATAGCATCCAATTCAATAACTCCAGGATTAGATTTTACTTGTGCAGC
20066095 TCTAGAGATCAAATATTTATAATCATTCTGAGTGATTCTCTCTAGAATTCTAACATCTTCATCGT
66 TCTAGAGATCAAATATTTATAATCATTCTGAGTGATTCTCTCTAGAATTCTAACATCTTCATCGT
20066160 ATGTATAGTCCAACAAAGGACCATTAGAAGATGCGTCGACAAGATTTCTTGTTTGTGTGTTCAGC
131 ATGTATAGTCCAACAAAGGACCATTAGAAGATGCGTCGACAAGATTTCTTGTTTGTGTGTTCAGC
20066225 CCGTTGTAGAAAATTTCAATCTGTGTCTCTTATTGAATGTCATGCATGGGGCAGCGTCGTAGAAA
196 CCGTTGTAGAAAATTTCAATCTGTGTCTCTTATTGAATGTCATGCATGGGGCAGCGTCGTAGAAA
20066290 AGATTTATAATGCTCCCACGTGGTATGAAGATTTTCATCATCCAACTGATGATACACAGTTATAT
261 AGATTTATAATGCTCCCACGTGGTATGAAGATTTTCATCATCCAACTGATGATACACAGTTATAT
20066355 CATTTCGAAGACAAGCATTCATAGTCGACGGGTTGAAATGCAAGACAAATTATATTGCGAGCGCA
326 CATTTCGAAGACAAGCATTCATAGTCGACGGGTTGAAATGCAAGACAAATTATATTGCGAGCGCA
*
20066420 TTCTGCGAAGTGATTGATCTGGCAGGTAGTCCAAAGAACCAGGTACTAGTCCGTCCTTGCAATGA
391 TTCCGCGAAGTGATTGATCTGGCAGGTAGTCCAAAGAACCAGGTACTAGTCCGTCCTTGCAATGA
20066485 ATAAGGGAATAGCTGCATTTTCAAGG
456 ATAAGGGAATAGCTGCATTTTCAAGG
20066511 TGCGCACTCAGAGCAGATATAGCATCCAATTCAATAACTCCAGGATTAGATTTTACTTGTGCAGC
1 TGCGCACTCAGAGCAGATATAGCATCCAATTCAATAACTCCAGGATTAGATTTTACTTGTGCAGC
20066576 TCTAGAGATCAAATATTTATAATCATTCTGAGTGATTCTCTCTAGAATTCTAACATCTTCATCGT
66 TCTAGAGATCAAATATTTATAATCATTCTGAGTGATTCTCTCTAGAATTCTAACATCTTCATCGT
20066641 ATGTATAGTCCAACAAAGGACCATTAGAAGATGCGTCGACAAGATTTCTTGTTTGTGTGTTCAGC
131 ATGTATAGTCCAACAAAGGACCATTAGAAGATGCGTCGACAAGATTTCTTGTTTGTGTGTTCAGC
20066706 CCGTTGTAGAAAATTTCAATCTGTGTCTCTTATTGAATGTCATGCATGGGGCAGCGTCGTAGAAA
196 CCGTTGTAGAAAATTTCAATCTGTGTCTCTTATTGAATGTCATGCATGGGGCAGCGTCGTAGAAA
*
20066771 AGATTTATAATGCTCCCACGTGGTATGAAGATTTTCATCATCCAGCTGATGATACACAGTTATAT
261 AGATTTATAATGCTCCCACGTGGTATGAAGATTTTCATCATCCAACTGATGATACACAGTTATAT
20066836 CATTTCGAAGACAAGCATTCATAGTCGACGGGTTGAAATGCAAGACAAATTATATTGCGAGCGCA
326 CATTTCGAAGACAAGCATTCATAGTCGACGGGTTGAAATGCAAGACAAATTATATTGCGAGCGCA
* *
20066901 TTCCGCGAAGTGATTGATCTGGCAGGTAGTCCAAGGAACCAGGTACTAGTTCGTCCTTGCAATGA
391 TTCCGCGAAGTGATTGATCTGGCAGGTAGTCCAAAGAACCAGGTACTAGTCCGTCCTTGCAATGA
20066966 ATAAGGGAATAGCTGCATTTTCAAGG
456 ATAAGGGAATAGCTGCATTTTCAAGG
20066992 TG
1 TG
20066994 TCATCGGGAA
Statistics
Matches: 478, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
481 478 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (481 bp):
TGCGCACTCAGAGCAGATATAGCATCCAATTCAATAACTCCAGGATTAGATTTTACTTGTGCAGC
TCTAGAGATCAAATATTTATAATCATTCTGAGTGATTCTCTCTAGAATTCTAACATCTTCATCGT
ATGTATAGTCCAACAAAGGACCATTAGAAGATGCGTCGACAAGATTTCTTGTTTGTGTGTTCAGC
CCGTTGTAGAAAATTTCAATCTGTGTCTCTTATTGAATGTCATGCATGGGGCAGCGTCGTAGAAA
AGATTTATAATGCTCCCACGTGGTATGAAGATTTTCATCATCCAACTGATGATACACAGTTATAT
CATTTCGAAGACAAGCATTCATAGTCGACGGGTTGAAATGCAAGACAAATTATATTGCGAGCGCA
TTCCGCGAAGTGATTGATCTGGCAGGTAGTCCAAAGAACCAGGTACTAGTCCGTCCTTGCAATGA
ATAAGGGAATAGCTGCATTTTCAAGG
Found at i:20069643 original size:148 final size:148
Alignment explanation
Indices: 20069375--20069673 Score: 571
Period size: 148 Copynumber: 2.0 Consensus size: 148
20069365 GTCTTCCGGG
*
20069375 GGACAAGTCATTTCATTCAACACTCTCAAAGTGTTTTCCAATCAATATTCAGCCCTGGATGGACC
1 GGACAAGTCATTTCATTCAACACTCTCAAAGTGTTTTCCAATCAATATTCAACCCTGGATGGACC
*
20069440 ATTCTCTGCACTTTCGCGAAATTCTTCCGCCCTATTTTCTTACCTTATCCGTCGGGATACGACGC
66 ATTCTCTGCACTTTCGCGAAATTCTTCCGCCCTATTTTCTTACCATATCCGTCGGGATACGACGC
20069505 CTCTATTTTATCATAAGA
131 CTCTATTTTATCATAAGA
20069523 GGACAAGTCATTTCATTCAACACTCTCAAAGTGTTTTCCAATCAATATTCAACCCTGGATGGACC
1 GGACAAGTCATTTCATTCAACACTCTCAAAGTGTTTTCCAATCAATATTCAACCCTGGATGGACC
20069588 ATTCTCTGCACTTTCGCGAAATTCTTCCGCCCTATTTTCTTACCATATCCGTCGGGATACGACGC
66 ATTCTCTGCACTTTCGCGAAATTCTTCCGCCCTATTTTCTTACCATATCCGTCGGGATACGACGC
*
20069653 CTCTATTTTATCATAGGA
131 CTCTATTTTATCATAAGA
20069671 GGA
1 GGA
20069674 GGTGGAGGCA
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
148 148 1.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (148 bp):
GGACAAGTCATTTCATTCAACACTCTCAAAGTGTTTTCCAATCAATATTCAACCCTGGATGGACC
ATTCTCTGCACTTTCGCGAAATTCTTCCGCCCTATTTTCTTACCATATCCGTCGGGATACGACGC
CTCTATTTTATCATAAGA
Found at i:20071542 original size:192 final size:192
Alignment explanation
Indices: 20071109--20071543 Score: 618
Period size: 192 Copynumber: 2.3 Consensus size: 192
20071099 TACCAATACT
* * *
20071109 CGATGCTGCTCACATGAGCTGTCGAGGACTTGCGACATATGCGGTACCCCAGCCAACGGTACGGT
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCCCAGCCAACGGTACGGT
* * * *
20071174 GTTTGTTTGTAAACTGTCCCCTAATGATGCTGCTCACATAAGTTGTCGAGAATATGCATTTAAGC
66 GTTTGTCTGTAAACTATCCCCTAACGATGCTGCTCACATAAGCTGTCGAGAATATGCATTTAAGC
* *
20071239 ATAAGTCCCAACCATCATAAGGCCTATAATCCATTTAGGACTCAAATCTCTTTTTCGACTCA
131 ATAAATCCCAACCATCATAAGGCCTATAATCCATTTAGGACTCAAATCTATTTTTCGACTCA
* * * * * * * *
20071301 TGATTCTGCTCACACGAGCTATCGTGGACTCACAATATATGCGGTACCCCAGCCATCGGTATGGT
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCCCAGCCAACGGTACGGT
*
20071366 GTTTGTCTGTAAACTATCCCCTAACGATGCTGCTCACATGAGCTGTCGAGAATATGCATTTAAGC
66 GTTTGTCTGTAAACTATCCCCTAACGATGCTGCTCACATAAGCTGTCGAGAATATGCATTTAAGC
* ** * * * *
20071431 ATAAATCTCAGTCATCATAAGGCCTATAATCCATTTAGTATTCATATCTATTTTTTGACTCA
131 ATAAATCCCAACCATCATAAGGCCTATAATCCATTTAGGACTCAAATCTATTTTTCGACTCA
* * *
20071493 CGATGCTGCTCACACGAGCTGTCGAAGACTCGTAACATATGCTGTACCCCA
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCCCA
20071544 ACGATCGCAT
Statistics
Matches: 209, Mismatches: 34, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
192 209 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (192 bp):
CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCCCAGCCAACGGTACGGT
GTTTGTCTGTAAACTATCCCCTAACGATGCTGCTCACATAAGCTGTCGAGAATATGCATTTAAGC
ATAAATCCCAACCATCATAAGGCCTATAATCCATTTAGGACTCAAATCTATTTTTCGACTCA
Found at i:20074244 original size:23 final size:23
Alignment explanation
Indices: 20074199--20074247 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 23
20074189 TTATTATTTT
*
20074199 TATATAAAAATAAATTTAAAAAA
1 TATATAAAAATAAATATAAAAAA
20074222 TATATAAAAATAATAATATAAAAAA
1 TATATAAAAAT-A-AATATAAAAAA
20074247 T
1 T
20074248 TTAATACATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.48
24 1 0.04
25 11 0.48
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (23 bp):
TATATAAAAATAAATATAAAAAA
Found at i:20076691 original size:2 final size:2
Alignment explanation
Indices: 20076679--20076731 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
20076669 TAAAAGAAAT
*
20076679 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20076721 TA TA TA TA TA T
1 TA TA TA TA TA T
20076732 GTTTGCTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:20077244 original size:37 final size:35
Alignment explanation
Indices: 20077152--20077366 Score: 164
Period size: 37 Copynumber: 5.7 Consensus size: 35
20077142 TACATTTAAA
20077152 TATTCGGGCTTTGTGCC-AGTAGGCTTTGTGCCGGTG
1 TATTC-GGCTTTGTGCCTAGTAGGCTTTGTG-CGGTG
* *
20077188 TAATCGGCTTTGTGTCTAGTAGGCTTTGTGTCGGTG
1 TATTCGGCTTTGTGCCTAGTAGGCTTTGTG-CGGTG
* *
20077224 TATTCGAGCTTTATGCCTAGTAGGATTTGTGCTGGTG
1 TATTCG-GCTTTGTGCCTAGTAGGCTTTGTGC-GGTG
* * *
20077261 TAATTGGGCTTTGTGCCGATGTAATCGGGCTTTGTGCCAGTG
1 T-ATTCGGCTTTGTGCCTA-GT-A---GGCTTTGTG-CGGTG
* * *
20077303 TAATCGGGCTTTGTGCCTAGTAGG-TTTCATGTCGATG
1 TATTC-GGCTTTGTGCCTAGTAGGCTTT-GTG-CGGTG
* *
20077340 TATTCAGGCTATGTACCTAGTAGGCTT
1 TATTC-GGCTTTGTGCCTAGTAGGCTT
20077367 GTTACCAGTG
Statistics
Matches: 143, Mismatches: 23, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
35 10 0.07
36 31 0.22
37 63 0.44
38 8 0.06
39 1 0.01
40 1 0.01
41 4 0.03
42 24 0.17
43 1 0.01
ACGTcount: A:0.14, C:0.16, G:0.31, T:0.38
Consensus pattern (35 bp):
TATTCGGCTTTGTGCCTAGTAGGCTTTGTGCGGTG
Found at i:20077275 original size:21 final size:21
Alignment explanation
Indices: 20077249--20077319 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
20077239 CCTAGTAGGA
* *
20077249 TTTGTGCTGGTGTAATTGGGC
1 TTTGTGCCGGTGTAATCGGGC
*
20077270 TTTGTGCCGATGTAATCGGGC
1 TTTGTGCCGGTGTAATCGGGC
*
20077291 TTTGTGCCAGTGTAATCGGGC
1 TTTGTGCCGGTGTAATCGGGC
20077312 TTTGTGCC
1 TTTGTGCC
20077320 TAGTAGGTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.11, C:0.17, G:0.34, T:0.38
Consensus pattern (21 bp):
TTTGTGCCGGTGTAATCGGGC
Found at i:20077320 original size:79 final size:73
Alignment explanation
Indices: 20077155--20077326 Score: 193
Period size: 79 Copynumber: 2.3 Consensus size: 73
20077145 ATTTAAATAT
* * * *
20077155 TCGGGCTTTGTGCC-AGTAGGCTTTGTGCCGGTGTAATCGGCTTTGTGTCTAGTAGGCTTTGTGT
1 TCGGGCTTTGTGCCTAGTAGGATTTGTGCCGGTGTAATCGGCTTTGTGCCGAGTAGGCTTTGTGC
* *
20077219 CGGTGTAT
66 CAGTGTAA
* * * *
20077227 TCGAGCTTTATGCCTAGTAGGATTTGTGCTGGTGTAATTGGGCTTTGTGCCGATGTAATCGGGCT
1 TCGGGCTTTGTGCCTAGTAGGATTTGTGCCGGTGTAA-TCGGCTTTGTGCCGA-GT-A---GGCT
20077292 TTGTGCCAGTGTAA
60 TTGTGCCAGTGTAA
20077306 TCGGGCTTTGTGCCTAGTAGG
1 TCGGGCTTTGTGCCTAGTAGG
20077327 TTTCATGTCG
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
72 12 0.15
73 20 0.25
74 12 0.15
75 2 0.02
76 1 0.01
79 34 0.42
ACGTcount: A:0.13, C:0.16, G:0.34, T:0.37
Consensus pattern (73 bp):
TCGGGCTTTGTGCCTAGTAGGATTTGTGCCGGTGTAATCGGCTTTGTGCCGAGTAGGCTTTGTGC
CAGTGTAA
Found at i:20080287 original size:15 final size:15
Alignment explanation
Indices: 20080267--20080312 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
20080257 ATCATAAATT
20080267 TTTTTCTTCTTTTTC
1 TTTTTCTTCTTTTTC
20080282 TTTTTCTTCCTTTTTC
1 TTTTTCTT-CTTTTTC
*
20080298 TCATTT-TTCTTTTTC
1 T-TTTTCTTCTTTTTC
20080313 AAGTGACTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 15 0.54
16 10 0.36
17 3 0.11
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTCTTCTTTTTC
Found at i:20080917 original size:18 final size:19
Alignment explanation
Indices: 20080894--20080937 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
20080884 TAACAAAAAG
* *
20080894 AATGCAGTGACA-AAATAA
1 AATGCAGGGACACAAACAA
20080912 AATGCAGGGACACTAAACAA
1 AATGCAGGGACAC-AAACAA
20080932 AATGCA
1 AATGCA
20080938 TGAAAATATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.50
20 11 0.50
ACGTcount: A:0.52, C:0.16, G:0.18, T:0.14
Consensus pattern (19 bp):
AATGCAGGGACACAAACAA
Found at i:20081065 original size:21 final size:23
Alignment explanation
Indices: 20081036--20081083 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
20081026 CTCACCCTCG
*
20081036 TCCTAGTG-C-TTCTTCTTTTTA
1 TCCTAGTGCCTTTCCTCTTTTTA
*
20081057 TCCTTGTGCCTTTTCCTCTTTTTA
1 TCCTAGTGCC-TTTCCTCTTTTTA
20081081 TCC
1 TCC
20081084 GTCGTACGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
24 14 0.64
ACGTcount: A:0.06, C:0.29, G:0.08, T:0.56
Consensus pattern (23 bp):
TCCTAGTGCCTTTCCTCTTTTTA
Found at i:20094515 original size:37 final size:37
Alignment explanation
Indices: 20094417--20094537 Score: 145
Period size: 37 Copynumber: 3.3 Consensus size: 37
20094407 AAATATTCAG
* * *
20094417 GCTTTATGCCTAGTAGGCTTTGTGCCGGTGTATTC-A
1 GCTTTGTGCCTAGTAGGCTTTGTGTCAGTGTATTCGA
* * *
20094453 GGCTTTATGCCTAGTAAGCTTTGTGTCAGTGTAATCGA
1 -GCTTTGTGCCTAGTAGGCTTTGTGTCAGTGTATTCGA
* * *
20094491 GTTTTGTGCCTAGTAGGCTTTGTGTTAATGTATTCGA
1 GCTTTGTGCCTAGTAGGCTTTGTGTCAGTGTATTCGA
20094528 GCTTTGTGCC
1 GCTTTGTGCC
20094538 GGTGTAATCG
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
37 71 0.99
38 1 0.01
ACGTcount: A:0.16, C:0.17, G:0.27, T:0.40
Consensus pattern (37 bp):
GCTTTGTGCCTAGTAGGCTTTGTGTCAGTGTATTCGA
Found at i:20094543 original size:21 final size:21
Alignment explanation
Indices: 20094519--20094558 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
20094509 TTTGTGTTAA
*
20094519 TGTATTCGAGCTTTGTGCCGG
1 TGTAATCGAGCTTTGTGCCGG
20094540 TGTAATCGAGCTTTGTGCC
1 TGTAATCGAGCTTTGTGCC
20094559 TAGTAGGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.20, G:0.30, T:0.38
Consensus pattern (21 bp):
TGTAATCGAGCTTTGTGCCGG
Found at i:20094596 original size:95 final size:95
Alignment explanation
Indices: 20094433--20094605 Score: 224
Period size: 95 Copynumber: 1.8 Consensus size: 95
20094423 TGCCTAGTAG
* * * * *
20094433 GCTTTGTGCCGGTGTATTCAGGCTTTATGCCTAGTAAGCTTTGTGTCAGTGTAATCGAGTTTTGT
1 GCTTTGTGCCGGTGTAATCAGGCTTTATGCCTAGTAAGCTTCGTGCCAGTGTAATCGAGCTATGT
*
20094498 GCCTAGTAGGCTTTGTGTTAATGTATTCGA
66 GCCTAGAAGGCTTTGTGTTAATGTATTCGA
* * * *
20094528 GCTTTGTGCCGGTGTAATC-GAGCTTTGTGCCTAGTAGGCTTCGTGCCTGT-TAATTCGGGCTAT
1 GCTTTGTGCCGGTGTAATCAG-GCTTTATGCCTAGTAAGCTTCGTGCCAGTGTAA-TCGAGCTAT
20094591 GTGCCTAGAAGGCTT
64 GTGCCTAGAAGGCTT
20094606 GTTGCCGGTG
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
94 4 0.06
95 62 0.94
ACGTcount: A:0.16, C:0.17, G:0.29, T:0.38
Consensus pattern (95 bp):
GCTTTGTGCCGGTGTAATCAGGCTTTATGCCTAGTAAGCTTCGTGCCAGTGTAATCGAGCTATGT
GCCTAGAAGGCTTTGTGTTAATGTATTCGA
Found at i:20097628 original size:18 final size:17
Alignment explanation
Indices: 20097605--20097673 Score: 66
Period size: 18 Copynumber: 3.8 Consensus size: 17
20097595 CGATCCCAAT
20097605 CGAATTAATTCGATTAAC
1 CGAATTAA-TCGATTAAC
*
20097623 CGAATTCAATAGATTAAC
1 CGAATT-AATCGATTAAC
* *
20097641 CTAATTTAATCGATTAAT
1 CGAA-TTAATCGATTAAC
*
20097659 CTAATTAATTCGATT
1 CGAATTAA-TCGATT
20097674 TTACCATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
17 4 0.09
18 36 0.82
19 4 0.09
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (17 bp):
CGAATTAATCGATTAAC
Found at i:20100915 original size:17 final size:17
Alignment explanation
Indices: 20100883--20100929 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
20100873 TAAATTTTTT
*
20100883 CATACATTTCAAGAATTA
1 CATAC-TTTTAAGAATTA
20100901 CATACTTTTAAGAATTA
1 CATACTTTTAAGAATTA
*
20100918 CATACTTATAAG
1 CATACTTTTAAG
20100930 TGAAGAACGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 22 0.81
18 5 0.19
ACGTcount: A:0.43, C:0.15, G:0.06, T:0.36
Consensus pattern (17 bp):
CATACTTTTAAGAATTA
Found at i:20102187 original size:26 final size:26
Alignment explanation
Indices: 20102158--20102235 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 26
20102148 GAGGAAGAAC
20102158 GAATGTGTAAATTCAAGGAGACTCTA
1 GAATGTGTAAATTCAAGGAGACTCTA
*
20102184 GAATAT-T---TTCAATTGGAAGA-TCTA
1 GAATGTGTAAATTCAA--GG-AGACTCTA
*
20102208 G--GGTGTAAATTCAAGGAGACTCTA
1 GAATGTGTAAATTCAAGGAGACTCTA
20102232 GAAT
1 GAAT
20102236 ACTGTCAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 20
0.61 0.06 0.32
Matches are distributed among these distances:
22 6 0.16
23 4 0.11
24 14 0.37
25 4 0.11
26 10 0.26
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.29
Consensus pattern (26 bp):
GAATGTGTAAATTCAAGGAGACTCTA
Found at i:20102221 original size:48 final size:48
Alignment explanation
Indices: 20102162--20102264 Score: 161
Period size: 48 Copynumber: 2.1 Consensus size: 48
20102152 AAGAACGAAT
* * *
20102162 GTGTAAATTCAAGGAGACTCTAGAATATTTTCAATTGGAAGATCTAGG
1 GTGTAAATTCAAGGAGACTCTAGAATACTGTCAATTAGAAGATCTAGG
*
20102210 GTGTAAATTCAAGGAGACTCTAGAATACTGTCAATTAGAGGATCTAGG
1 GTGTAAATTCAAGGAGACTCTAGAATACTGTCAATTAGAAGATCTAGG
*
20102258 GTTTAAA
1 GTGTAAA
20102265 ATCCCATGGT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (48 bp):
GTGTAAATTCAAGGAGACTCTAGAATACTGTCAATTAGAAGATCTAGG
Found at i:20106272 original size:25 final size:24
Alignment explanation
Indices: 20106224--20106273 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
20106214 TTTCATGTTA
**
20106224 ATTTTTTAAATTTTTTATGTTTTT
1 ATTTTTTAAATTTTTTATAATTTT
*
20106248 ATTTTTTGAATTTTTTTATAATTTT
1 ATTTTTT-AAATTTTTTATAATTTT
20106273 A
1 A
20106274 AATAATTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (24 bp):
ATTTTTTAAATTTTTTATAATTTT
Found at i:20109123 original size:52 final size:52
Alignment explanation
Indices: 20109061--20109294 Score: 337
Period size: 52 Copynumber: 4.5 Consensus size: 52
20109051 GTATTTGGTA
* * * *
20109061 ACTCACGATGACATAGAGTCATCGGACCTAATAATCCGAAAAGAATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTTATAATCCGAAAAGGATTCATAT
*
20109113 ACTCACGATGACACATAGTCATCGGACCTTATAATCC-ATAAAGGATTCAGAT
1 ACTCACGATGACACATAGTCATCGGACCTTATAATCCGA-AAAGGATTCATAT
* *
20109165 ACTCACGATGACACATAGTCGTCGGACCTTATAATCCGTAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTTATAATCCGAAAAGGATTCATAT
* * * *
20109217 ACTCACGATGATACATAGTCATCGAACCCTATAATTCGTAAAA-GATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTTATAATCCG-AAAAGGATTCATAT
20109269 ACTCACGATGACACATAGTCATCGGA
1 ACTCACGATGACACATAGTCATCGGA
20109295 TCTTTTGCAT
Statistics
Matches: 163, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
51 1 0.01
52 159 0.98
53 3 0.02
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (52 bp):
ACTCACGATGACACATAGTCATCGGACCTTATAATCCGAAAAGGATTCATAT
Found at i:20116921 original size:3 final size:3
Alignment explanation
Indices: 20116913--20116966 Score: 78
Period size: 3 Copynumber: 19.0 Consensus size: 3
20116903 GCATTAGAAT
*
20116913 TTA TTA TTA -TA TT- TTA -GA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
20116958 TTA TTA TTA
1 TTA TTA TTA
20116967 GGGTAAAGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 5 0.11
3 41 0.89
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:20125209 original size:24 final size:24
Alignment explanation
Indices: 20125177--20125283 Score: 90
Period size: 24 Copynumber: 4.5 Consensus size: 24
20125167 CAATTTCATT
*
20125177 ACGTTTACGCTTGTCAGC-TAGTAC
1 ACGTTTACGCTCGTCAGCTTA-TAC
*
20125201 ACGTTTACGCTCGTCAGCTTATAT
1 ACGTTTACGCTCGTCAGCTTATAC
* * **
20125225 ACGTTTACACTCGTCAGGTTGCAC
1 ACGTTTACGCTCGTCAGCTTATAC
** ** **
20125249 TTGTTTATACTCGTCAGCTTGCAC
1 ACGTTTACGCTCGTCAGCTTATAC
20125273 ACGTTTACGCT
1 ACGTTTACGCT
20125284 ACTATGAAAT
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
24 65 0.97
25 2 0.03
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.36
Consensus pattern (24 bp):
ACGTTTACGCTCGTCAGCTTATAC
Found at i:20132257 original size:24 final size:24
Alignment explanation
Indices: 20132225--20132355 Score: 113
Period size: 24 Copynumber: 5.5 Consensus size: 24
20132215 CAGTTTCATT
20132225 ACGTTTACACTCATCAGCTTGCAC
1 ACGTTTACACTCATCAGCTTGCAC
* ** *
20132249 ACGTTTACACTCTTCAGCTTATAT
1 ACGTTTACACTCATCAGCTTGCAC
* **
20132273 ACGTTTACGCTTGTCAGCTTGCAC
1 ACGTTTACACTCATCAGCTTGCAC
* * * * *
20132297 ACATTTACGCTCGTTAGCTTATGTAC
1 ACGTTTACACTCATCAGC-T-TGCAC
*
20132323 A--TTTACGCTCATCAGCTTGCAC
1 ACGTTTACACTCATCAGCTTGCAC
20132345 ACGTTTACACT
1 ACGTTTACACT
20132356 ACTATGAAAT
Statistics
Matches: 85, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
22 5 0.06
23 1 0.01
24 73 0.86
25 1 0.01
26 5 0.06
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.35
Consensus pattern (24 bp):
ACGTTTACACTCATCAGCTTGCAC
Found at i:20132295 original size:48 final size:48
Alignment explanation
Indices: 20132224--20132355 Score: 185
Period size: 48 Copynumber: 2.8 Consensus size: 48
20132214 GCAGTTTCAT
*
20132224 TACGTTTACACTCATCAGCTTGCACACGTTTACACTC-TTCAGCTTATA
1 TACGTTTACGCTCATCAGCTTGCACACGTTTACACTCGTT-AGCTTATA
** * * *
20132272 TACGTTTACGCTTGTCAGCTTGCACACATTTACGCTCGTTAGCTTATG
1 TACGTTTACGCTCATCAGCTTGCACACGTTTACACTCGTTAGCTTATA
*
20132320 TACATTTACGCTCATCAGCTTGCACACGTTTACACT
1 TACGTTTACGCTCATCAGCTTGCACACGTTTACACT
20132356 ACTATGAAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 70 0.97
49 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.36
Consensus pattern (48 bp):
TACGTTTACGCTCATCAGCTTGCACACGTTTACACTCGTTAGCTTATA
Found at i:20141505 original size:16 final size:18
Alignment explanation
Indices: 20141484--20141522 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
20141474 ATTTAACTTA
*
20141484 TTTATTTTA-TTT-TTGT
1 TTTATTTTAGTTTGATGT
20141500 TTTATTTTAGTTTGATGT
1 TTTATTTTAGTTTGATGT
20141518 TTTAT
1 TTTAT
20141523 CTCTAAACGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 9 0.45
17 3 0.15
18 8 0.40
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.74
Consensus pattern (18 bp):
TTTATTTTAGTTTGATGT
Found at i:20146625 original size:13 final size:13
Alignment explanation
Indices: 20146607--20146631 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20146597 TAAAATTCCA
20146607 AAATAATAATAAT
1 AAATAATAATAAT
20146620 AAATAATAATAA
1 AAATAATAATAA
20146632 CCAAAATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATAATAATAAT
Found at i:20147726 original size:20 final size:20
Alignment explanation
Indices: 20147695--20147778 Score: 80
Period size: 20 Copynumber: 4.2 Consensus size: 20
20147685 ATTTTTTAAA
*
20147695 AAAGTCAACGGTCAA-AGTC
1 AAAGTTAACGGTCAACAGTC
* *
20147714 AATGGTTAACGGTCAACAGTT
1 AA-AGTTAACGGTCAACAGTC
*
20147735 AAAGTTAATGGTCAACAGTC
1 AAAGTTAACGGTCAACAGTC
* * * *
20147755 AAAGTCAATGATCAATAGTC
1 AAAGTTAACGGTCAACAGTC
20147775 AAAG
1 AAAG
20147779 CAATGATTGA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
19 2 0.04
20 47 0.87
21 5 0.09
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (20 bp):
AAAGTTAACGGTCAACAGTC
Found at i:20147730 original size:27 final size:27
Alignment explanation
Indices: 20147697--20147776 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 27
20147687 TTTTTAAAAA
* *
20147697 AGTCAACGGTCAAAGTCAATGGTTAAC
1 AGTCAACAGTCAAAGTCAATGGTCAAC
* * *
20147724 GGTCAACAGTTAAAGTTAATGGTCAAC
1 AGTCAACAGTCAAAGTCAATGGTCAAC
* *
20147751 AGTCAA-AGTCAATGATCAATAGTCAA
1 AGTCAACAGTCAAAG-TCAATGGTCAA
20147777 AGCAATGATT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
26 6 0.14
27 36 0.86
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (27 bp):
AGTCAACAGTCAAAGTCAATGGTCAAC
Found at i:20147784 original size:19 final size:20
Alignment explanation
Indices: 20147726--20147785 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
20147716 TGGTTAACGG
* * *
20147726 TCAACAGTTAAAGTTAATGG
1 TCAACAGTCAAAGTCAATGA
20147746 TCAACAGTCAAAGTCAATGA
1 TCAACAGTCAAAGTCAATGA
*
20147766 TCAATAGTCAAAG-CAATGA
1 TCAACAGTCAAAGTCAATGA
20147785 T
1 T
20147786 TGATCAACGG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 7 0.19
20 29 0.81
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (20 bp):
TCAACAGTCAAAGTCAATGA
Found at i:20148368 original size:11 final size:12
Alignment explanation
Indices: 20148348--20148391 Score: 58
Period size: 11 Copynumber: 3.8 Consensus size: 12
20148338 AGTGATTAAA
20148348 AGAGAAAGAAAT
1 AGAGAAAGAAAT
20148360 AGA-AAAGAAA-
1 AGAGAAAGAAAT
20148370 AGAGAAAGAAAT
1 AGAGAAAGAAAT
20148382 A-AGTAAAGAA
1 AGAG-AAAGAA
20148392 TGAGATAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 3 0.10
11 16 0.55
12 10 0.34
ACGTcount: A:0.70, C:0.00, G:0.23, T:0.07
Consensus pattern (12 bp):
AGAGAAAGAAAT
Found at i:20148370 original size:22 final size:23
Alignment explanation
Indices: 20148345--20148391 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
20148335 AAGAGTGATT
20148345 AAAAGAGAAAGAAAT-AGAAAAG
1 AAAAGAGAAAGAAATAAGAAAAG
*
20148367 AAAAGAGAAAGAAATAAGTAAAG
1 AAAAGAGAAAGAAATAAGAAAAG
20148390 AA
1 AA
20148392 TGAGATAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.06
Consensus pattern (23 bp):
AAAAGAGAAAGAAATAAGAAAAG
Found at i:20158043 original size:53 final size:53
Alignment explanation
Indices: 20157946--20158161 Score: 303
Period size: 53 Copynumber: 4.1 Consensus size: 53
20157936 GTAAATGCAA
* *
20157946 AAAGGTCCGATGA-T-TGTGTCATCGTGAGTTATATGAATCATATTACAGATT
1 AAAGGTTCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACAGATT
*
20157997 AAAGGTTCGATGACTCTGTGTCATCG-GAGTTATATGAAATCCTATTACAGACT
1 AAAGGTTCGATGACTCTGTGTCATCGTGAGTTATATG-AATCCTATTACAGATT
* * *
20158050 AAAGGTTCGATGACTCTGTGTCATCGTGAGTTATACGAATCCTATTACGGGTT
1 AAAGGTTCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACAGATT
* * * * *
20158103 AAAGGTTCGATAACTTTGTGTCATCGTGAGTTATATGCATCCTATTACGGATC
1 AAAGGTTCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACAGATT
20158156 AAAGGT
1 AAAGGT
20158162 CTGAAGTTGG
Statistics
Matches: 148, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
51 12 0.08
52 11 0.07
53 116 0.78
54 9 0.06
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (53 bp):
AAAGGTTCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACAGATT
Found at i:20192696 original size:24 final size:25
Alignment explanation
Indices: 20192648--20192704 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 25
20192638 CGTCATTGCA
20192648 ATTTTTCTATATAATTCGTGTCTTTT
1 ATTTTTCTATATAATTCGTGTC-TTT
20192674 ATTTTTCT-T-TAATTCGT-TGCTTT
1 ATTTTTCTATATAATTCGTGT-CTTT
*
20192697 AGTTTTCT
1 ATTTTTCT
20192705 GTAGGAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 11 0.38
24 9 0.31
25 1 0.03
26 8 0.28
ACGTcount: A:0.16, C:0.12, G:0.09, T:0.63
Consensus pattern (25 bp):
ATTTTTCTATATAATTCGTGTCTTT
Found at i:20221603 original size:22 final size:22
Alignment explanation
Indices: 20221578--20221620 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
20221568 AAAATATTTC
*
20221578 ATTA-ATAATTTGGGTTTAATTA
1 ATTATATAACTTGGG-TTAATTA
*
20221600 ATTATTTAACTTGGGTTAATT
1 ATTATATAACTTGGGTTAATT
20221621 TTATTCTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.51
Consensus pattern (22 bp):
ATTATATAACTTGGGTTAATTA
Found at i:20246674 original size:22 final size:22
Alignment explanation
Indices: 20246628--20246710 Score: 114
Period size: 23 Copynumber: 3.6 Consensus size: 22
20246618 TAATCAACAC
20246628 AAAACCCAAA-CCTTTTAAATA
1 AAAACCCAAACCCTTTTAAATA
20246649 AAAACCCAAACCCTTTTTAAATA
1 AAAACCCAAACCC-TTTTAAATA
20246672 AAAACCCAAACCCTTTTAAACTA
1 AAAACCCAAACCCTTTTAAA-TA
20246695 AACCAACCCAACACCC
1 AA--AACCCAA-ACCC
20246711 AAACCAAGTG
Statistics
Matches: 56, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.18
22 9 0.16
23 26 0.46
25 7 0.12
26 4 0.07
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (22 bp):
AAAACCCAAACCCTTTTAAATA
Found at i:20250492 original size:20 final size:20
Alignment explanation
Indices: 20250451--20250492 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
20250441 ATTGCAATGG
* *
20250451 TTACTTTTACTTTGTTCTTT
1 TTACTTTCACTTTGTTCCTT
20250471 TTACTTTCA-TTTGTTTCCTT
1 TTACTTTCACTTTG-TTCCTT
20250491 TT
1 TT
20250493 TAAGCTATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.10, C:0.17, G:0.05, T:0.69
Consensus pattern (20 bp):
TTACTTTCACTTTGTTCCTT
Found at i:20252316 original size:15 final size:15
Alignment explanation
Indices: 20252292--20252327 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
20252282 GAAGGAAAAT
*
20252292 GAAGAAGAGAAGAAA
1 GAAGAGGAGAAGAAA
*
20252307 GAAGAGGAGAAGAAT
1 GAAGAGGAGAAGAAA
20252322 GAAGAG
1 GAAGAG
20252328 AAAGAAGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.39, T:0.03
Consensus pattern (15 bp):
GAAGAGGAGAAGAAA
Found at i:20252768 original size:18 final size:18
Alignment explanation
Indices: 20252742--20252778 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
20252732 ATGCATAGCA
20252742 TTTAGTTGTCATTACATT
1 TTTAGTTGTCATTACATT
* *
20252760 TTTATTTGTCATTGCATT
1 TTTAGTTGTCATTACATT
20252778 T
1 T
20252779 CATTTATTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.11, T:0.59
Consensus pattern (18 bp):
TTTAGTTGTCATTACATT
Found at i:20277814 original size:18 final size:18
Alignment explanation
Indices: 20277787--20277842 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
20277777 TGCAGTCTGT
*
20277787 TGTGGCTGCATAC-GAACA
1 TGTGACTGCAT-CTGAACA
* *
20277805 TGTGATTGCATCTGAGCA
1 TGTGACTGCATCTGAACA
*
20277823 TGTGACTGCATCTGATCA
1 TGTGACTGCATCTGAACA
20277841 TG
1 TG
20277843 ATGTGCCTGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
17 1 0.03
18 31 0.97
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (18 bp):
TGTGACTGCATCTGAACA
Found at i:20284967 original size:14 final size:14
Alignment explanation
Indices: 20284948--20284974 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
20284938 TTTAGTACAT
20284948 TGACATTTAACTTC
1 TGACATTTAACTTC
20284962 TGACATTTAACTT
1 TGACATTTAACTT
20284975 TGATTGCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.19, G:0.07, T:0.44
Consensus pattern (14 bp):
TGACATTTAACTTC
Found at i:20287324 original size:14 final size:14
Alignment explanation
Indices: 20287296--20287334 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
20287286 CATCGAGTTT
*
20287296 TCTTATCTTTTTTTC
1 TCTTA-CTTTATTTC
20287311 TCTTACTTTATTTC
1 TCTTACTTTATTTC
*
20287325 TTTTACTTTA
1 TCTTACTTTA
20287335 ATTTTATGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.69
Consensus pattern (14 bp):
TCTTACTTTATTTC
Found at i:20287355 original size:21 final size:20
Alignment explanation
Indices: 20287317--20287356 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
20287307 TTTCTCTTAC
*
20287317 TTTATTTCTTTTACTTTAAT
1 TTTATTTCTTTAACTTTAAT
*
20287337 TTTATGTTCTTTAAGTTTAA
1 TTTAT-TTCTTTAACTTTAA
20287357 AACCCAATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (20 bp):
TTTATTTCTTTAACTTTAAT
Found at i:20296366 original size:52 final size:52
Alignment explanation
Indices: 20296302--20296488 Score: 252
Period size: 52 Copynumber: 3.6 Consensus size: 52
20296292 ATTTCTTTTA
* *
20296302 ATACTCACGATGACACATAATCATCGAACCTCATAATTCGTAAAAGATTCAT
1 ATACTCACGATGACACATAGTCATCGAACCTCATAATTCGTAAAGGATTCAT
* * * *
20296354 ATGCTCACGATGATACATAGTCATCGGACCTCATAATTCATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGAACCTCATAATTCGTAAAGGATTCAT
* * *
20296406 ATACTCATGGA-GACACATAGTCATCGGAA-CTCATAATCCGTTAAGGATTCAT
1 ATACTCA-CGATGACACATAGTCATC-GAACCTCATAATTCGTAAAGGATTCAT
*
20296458 ATACTCACGATGACACATAGTCATCGGACCT
1 ATACTCACGATGACACATAGTCATCGAACCT
20296489 TTTACACTTA
Statistics
Matches: 116, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
51 4 0.03
52 108 0.93
53 4 0.03
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGAACCTCATAATTCGTAAAGGATTCAT
Found at i:20303147 original size:60 final size:60
Alignment explanation
Indices: 20303079--20303248 Score: 207
Period size: 52 Copynumber: 3.0 Consensus size: 60
20303069 TTTCAATTCG
* * *
20303079 CATTTGATACTCACGATGACACCA-AGTCATTGGACCTT-TAATCCGTAATGGGATTCATTT
1 CATTTGATACTCACCATGACA-CATAGTCATCGGACCTTATAATCCGTAA-AGGATTCATTT
20303139 CATTTGATACTCACCATGACACATAGTCATCGGACCTTATAATCCGTAAAGG----A-TT
1 CATTTGATACTCACCATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCATTT
* *
20303194 CA--T-ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
1 CATTTGATACTCACCATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
20303249 ATACTCACGA
Statistics
Matches: 98, Mismatches: 5, Indels: 17
0.82 0.04 0.14
Matches are distributed among these distances:
52 44 0.45
53 1 0.01
55 4 0.04
56 2 0.02
59 2 0.02
60 35 0.36
61 10 0.10
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (60 bp):
CATTTGATACTCACCATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCATTT
Found at i:20303279 original size:52 final size:52
Alignment explanation
Indices: 20303145--20303272 Score: 238
Period size: 52 Copynumber: 2.5 Consensus size: 52
20303135 ATTTCATTTG
* *
20303145 ATACTCACCATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
20303197 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
20303249 ATACTCACGATGACACATAGTCAT
1 ATACTCACGATGACACATAGTCAT
20303273 TAGACCTTTT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:20312196 original size:24 final size:24
Alignment explanation
Indices: 20312167--20312417 Score: 403
Period size: 24 Copynumber: 10.5 Consensus size: 24
20312157 TTTAGCCAAC
*
20312167 ACGAGCCCAGAATGATTAACTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
20312191 ACGAGCCCAGAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
20312215 ACGAGCCCAGAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
*
20312239 ACGAGCCCAAAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
*
20312263 ACGAGTCCAGAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
*
20312287 ACGAGCCTAGAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
* * *
20312311 ACGAGCCTAGAATAATTGGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
* *
20312335 ACGAGCCCAAAATGATTAGCTATT
1 ACGAGCCCAGAATGATTAGCTCTT
*
20312359 ATGAGCCCAGAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
20312383 ACGAGCCCAGAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
*
20312407 ACAAGCCCAGA
1 ACGAGCCCAGA
20312418 TAGAGTTTAA
Statistics
Matches: 209, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 209 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (24 bp):
ACGAGCCCAGAATGATTAGCTCTT
Found at i:20317436 original size:19 final size:19
Alignment explanation
Indices: 20317409--20317485 Score: 82
Period size: 19 Copynumber: 3.9 Consensus size: 19
20317399 AAATTTAGAG
*
20317409 TTTATAAATATTGATAAAT
1 TTTAAAAATATTGATAAAT
20317428 TTTAAAAATATTGATAAAT
1 TTTAAAAATATTGATAAAT
* * * *
20317447 TCTTAGATATTTTAATAAAAT
1 T-TTAAAAATATTGAT-AAAT
*
20317468 TTTAAAAATATCGATAAA
1 TTTAAAAATATTGATAAA
20317486 ACCTTAAATA
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
19 22 0.48
20 19 0.41
21 5 0.11
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (19 bp):
TTTAAAAATATTGATAAAT
Found at i:20317468 original size:40 final size:39
Alignment explanation
Indices: 20317424--20317546 Score: 138
Period size: 40 Copynumber: 3.1 Consensus size: 39
20317414 AAATATTGAT
20317424 AAATTTTAAAAATATTGATAAATTCTTAGATATTTTAATA
1 AAATTTTAAAAATATTGATAAA-TCTTAGATATTTTAATA
* * * *
20317464 AAATTTTAAAAATATCGATAAAACCTTAAATATTTTAGTA
1 AAATTTTAAAAATATTGAT-AAATCTTAGATATTTTAATA
* * * * *
20317504 AAGTCTTAGAAATATTGATAAATCTTTAGTTATTTTGATA
1 AAATTTTAAAAATATTGATAAATC-TTAGATATTTTAATA
20317544 AAA
1 AAA
20317547 GATAATTTTG
Statistics
Matches: 67, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
39 4 0.06
40 60 0.90
41 3 0.04
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.41
Consensus pattern (39 bp):
AAATTTTAAAAATATTGATAAATCTTAGATATTTTAATA
Found at i:20317525 original size:20 final size:19
Alignment explanation
Indices: 20317414--20317529 Score: 81
Period size: 20 Copynumber: 5.9 Consensus size: 19
20317404 TAGAGTTTAT
*
20317414 AAATATTGATAAATTTTAA
1 AAATATTGATAAATCTTAA
*
20317433 AAATATTGATAAATTCTTAG
1 AAATATTGATAAA-TCTTAA
* * * *
20317453 ATATTTTAATAAAATTTTAA
1 AAATATTGAT-AAATCTTAA
* *
20317473 AAATATCGATAAAACCTTAA
1 AAATATTGAT-AAATCTTAA
* * *
20317493 ATAT-TTTAGTAAAGTCTTAG
1 AAATATTGA-TAAA-TCTTAA
20317513 AAATATTGATAAATCTT
1 AAATATTGATAAATCTT
20317530 TAGTTATTTT
Statistics
Matches: 72, Mismatches: 20, Indels: 10
0.71 0.20 0.10
Matches are distributed among these distances:
19 22 0.31
20 44 0.61
21 6 0.08
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.41
Consensus pattern (19 bp):
AAATATTGATAAATCTTAA
Found at i:20327912 original size:5 final size:6
Alignment explanation
Indices: 20327898--20327930 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
20327888 TGGAGCTGCA
20327898 TTTTAT TTTTAT TTTTAT TTTTA- TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
20327931 TAATTTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:20327918 original size:11 final size:11
Alignment explanation
Indices: 20327897--20327930 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
20327887 TTGGAGCTGC
20327897 ATTTTATTTTT
1 ATTTTATTTTT
20327908 ATTTTTATTTTT
1 A-TTTTATTTTT
20327920 ATTTTATTTTT
1 ATTTTATTTTT
20327931 TAATTTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:20327931 original size:12 final size:12
Alignment explanation
Indices: 20327897--20327938 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
20327887 TTGGAGCTGC
20327897 ATTTTA-TTTTT
1 ATTTTATTTTTT
20327908 ATTTT-TATTTTT
1 ATTTTAT-TTTTT
20327920 ATTTTATTTTTT
1 ATTTTATTTTTT
*
20327932 AATTTAT
1 ATTTTAT
20327939 AATCATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 5 0.19
12 21 0.78
13 1 0.04
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
ATTTTATTTTTT
Found at i:20329094 original size:26 final size:25
Alignment explanation
Indices: 20329065--20329125 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
20329055 TTAAACTAAG
*
20329065 CTTTTCAAAAGTATTTTTTAAAACCA
1 CTTTTCAAAA-TACTTTTTAAAACCA
*
20329091 CTTTTCTAAAATACTTTTTAAAAGCA
1 CTTTTC-AAAATACTTTTTAAAACCA
*
20329117 CTTCTCAAA
1 CTTTTCAAA
20329126 GGTAATGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.10
26 24 0.77
27 4 0.13
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (25 bp):
CTTTTCAAAATACTTTTTAAAACCA
Found at i:20332799 original size:16 final size:16
Alignment explanation
Indices: 20332778--20332834 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
20332768 AAAATTAAAG
20332778 ATGAAATGCAATAATA
1 ATGAAATGCAATAATA
***
20332794 ATGAAATGGTTTAA-A
1 ATGAAATGCAATAATA
*
20332809 GATTAAATGCAATAATA
1 -ATGAAATGCAATAATA
20332826 ATGAAATGC
1 ATGAAATGC
20332835 GGTCCCTAAC
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
15 1 0.03
16 29 0.94
17 1 0.03
ACGTcount: A:0.51, C:0.05, G:0.16, T:0.28
Consensus pattern (16 bp):
ATGAAATGCAATAATA
Found at i:20332810 original size:32 final size:32
Alignment explanation
Indices: 20332772--20332833 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
20332762 TAATGTAAAA
20332772 TTAAAGATGAAATGCAATAATAATGAAATGGT
1 TTAAAGATGAAATGCAATAATAATGAAATGGT
*
20332804 TTAAAGATTAAATGCAATAATAATGAAATG
1 TTAAAGATGAAATGCAATAATAATGAAATG
20332834 CGGTCCCTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.16, T:0.29
Consensus pattern (32 bp):
TTAAAGATGAAATGCAATAATAATGAAATGGT
Found at i:20341263 original size:12 final size:12
Alignment explanation
Indices: 20341246--20341274 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
20341236 GCTGTTGTAG
20341246 GAATTACTATAA
1 GAATTACTATAA
20341258 GAATTACTATAA
1 GAATTACTATAA
20341270 GAATT
1 GAATT
20341275 TCCTTGGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.07, G:0.10, T:0.34
Consensus pattern (12 bp):
GAATTACTATAA
Found at i:20351593 original size:19 final size:16
Alignment explanation
Indices: 20351560--20351600 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 16
20351550 TTTATCATAA
20351560 CTTTTTTTTTCTTTTT
1 CTTTTTTTTTCTTTTT
20351576 CTTTCTTTTTCTCATTTTT
1 CTTT-TTTTT-TC-TTTTT
20351595 CTTTTT
1 CTTTTT
20351601 CAAGTGACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 4 0.18
17 5 0.23
18 4 0.18
19 9 0.41
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (16 bp):
CTTTTTTTTTCTTTTT
Found at i:20352213 original size:34 final size:34
Alignment explanation
Indices: 20352148--20352213 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
20352138 ATATATATGG
* *
20352148 AAATGCAATGACAATGTAGATGCAGCTACAATAA
1 AAATGCAATGACAATATAGATGCAGCGACAATAA
* *
20352182 AAATGCAATGACATTAATA-ATGCAGGGACAAT
1 AAATGCAATGACAAT-ATAGATGCAGCGACAAT
20352214 TATACTATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 25 0.93
35 2 0.07
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (34 bp):
AAATGCAATGACAATATAGATGCAGCGACAATAA
Found at i:20370440 original size:24 final size:24
Alignment explanation
Indices: 20370413--20370519 Score: 178
Period size: 24 Copynumber: 4.5 Consensus size: 24
20370403 TTTAGCCAAC
*
20370413 ACGAGCTCAGAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
*
20370437 ACGAGCCTAGAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
*
20370461 ACGAGCCCAGAATAATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
20370485 ACGAGCCCAGAATGATTAGCTCTT
1 ACGAGCCCAGAATGATTAGCTCTT
*
20370509 ACAAGCCCAGA
1 ACGAGCCCAGA
20370520 CAGAGTTTAA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 77 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (24 bp):
ACGAGCCCAGAATGATTAGCTCTT
Found at i:20372340 original size:26 final size:26
Alignment explanation
Indices: 20372288--20372340 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
20372278 TTGTTACAAA
* * *
20372288 TGTCGCTACATGAACATGTCTAGAAT
1 TGTCGCTACATAAACATGTCCAAAAT
* *
20372314 TGTCGCTGCATAAACGTGTCCAAAAT
1 TGTCGCTACATAAACATGTCCAAAAT
20372340 T
1 T
20372341 ACGCCCAGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
TGTCGCTACATAAACATGTCCAAAAT
Found at i:20378283 original size:37 final size:38
Alignment explanation
Indices: 20378189--20378283 Score: 104
Period size: 38 Copynumber: 2.5 Consensus size: 38
20378179 TAGGAAATGA
* *
20378189 ACCCCAGACTGTCGATGCATAAATATTCTTCAAATTGC
1 ACCCAAGAATGTCGATGCATAAATATTCTTCAAATTGC
* * * *
20378227 ATCCAA-AACTATCGTTGCATAAGTATTCTTC-AATTGC
1 ACCCAAGAA-TGTCGATGCATAAATATTCTTCAAATTGC
*
20378264 ACCCAAGAATGTCGCTGCAT
1 ACCCAAGAATGTCGATGCAT
20378284 GAACATGTTC
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
37 21 0.46
38 25 0.54
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (38 bp):
ACCCAAGAATGTCGATGCATAAATATTCTTCAAATTGC
Found at i:20381679 original size:16 final size:16
Alignment explanation
Indices: 20381658--20381698 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
20381648 TAGTCACATA
20381658 AAAAGAAGAAGA-AAAG
1 AAAAGAA-AAGACAAAG
20381674 AAAAGAAAAGACAAAG
1 AAAAGAAAAGACAAAG
20381690 ACAAAGAAA
1 A-AAAGAAA
20381699 TATATTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.17
16 12 0.52
17 7 0.30
ACGTcount: A:0.76, C:0.05, G:0.20, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAGACAAAG
Found at i:20381689 original size:6 final size:5
Alignment explanation
Indices: 20381658--20381698 Score: 55
Period size: 5 Copynumber: 7.6 Consensus size: 5
20381648 TAGTCACATA
20381658 AAAAG AAGAAG AAAAG AAAAG AAAAG ACAAAG ACAAAG AAA
1 AAAAG AA-AAG AAAAG AAAAG AAAAG A-AAAG A-AAAG AAA
20381699 TATATTTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 18 0.53
6 16 0.47
ACGTcount: A:0.76, C:0.05, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:20382250 original size:38 final size:37
Alignment explanation
Indices: 20382207--20382280 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 37
20382197 TGCACCCAAG
*
20382207 ACTATCACTACATAAATATTCTTCAAATTGCATCCAGA
1 ACTATCACTACATAAATATTCTTC-AATTGCAACCAGA
** * *
20382245 ACTATCGTTTCATAAGTATTCTTCAATTGCAACCAG
1 ACTATCACTACATAAATATTCTTCAATTGCAACCAG
20382281 GAATGTCGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
37 11 0.35
38 20 0.65
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (37 bp):
ACTATCACTACATAAATATTCTTCAATTGCAACCAGA
Found at i:20382333 original size:26 final size:26
Alignment explanation
Indices: 20382284--20382337 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
20382274 CAACCAGGAA
**
20382284 TGTCGATGCATGAACATGTTCAGAAT
1 TGTCGATGCATGAACATGCCCAGAAT
* *
20382310 TGTCGTTGCATGAACGTGCCCAGAAT
1 TGTCGATGCATGAACATGCCCAGAAT
20382336 TG
1 TG
20382338 CGCCCAGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
TGTCGATGCATGAACATGCCCAGAAT
Found at i:20384014 original size:16 final size:16
Alignment explanation
Indices: 20383993--20384023 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20383983 TTGTGGATCC
20383993 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
20384009 CATTTTATCTTTATT
1 CATTTTACCTTTATT
20384024 TTCACATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:20384438 original size:884 final size:884
Alignment explanation
Indices: 20382730--20384503 Score: 2637
Period size: 884 Copynumber: 2.0 Consensus size: 884
20382720 AAACGATGGT
*
20382730 ATGGAAGTACACTAGATATTTAGACTAATTTATATTTTATCCAAGCTTGCCTTTACTGTTTAATT
1 ATGGAAGTACACTAGATATTTAGACTAATTTATACTTTATCCAAGCTTGCCTTTACTGTTTAATT
* * * * *
20382795 TTTGGGTTTGAATGATTTTAGCATCGAAGTGTTATTGCAGTCACAGTTATTAGAAGGTGCAGTGA
66 TTTGGGTTTGAATGATTTTAGCATCGAAGTGTTATTGCAGCCACAATCACTAGAAGGTGCAATGA
*
20382860 CAGTTTAAACTAACAAGCAAGATAACAGAAGTTGCTTGGGGATTGAAGGAATTTGGTCAAATTGT
131 CAGTTTAAACTAACAAGCAAGAAAACAGAAGTTGCTTGGGGATTGAAGGAATTTGGTCAAATTGT
* * * * *
20382925 TCTTAAATGTGTTGCATTGCCAGCACTAGAAGTTGTGGTTAGTGTGCATACAAAAATCATAGATT
196 TCTTAAATGTGATGCATTACCAGCACCAGAAGGTGTGGTTAGTGTGCATACAAAAATCATAGATC
** * *
20382990 TATTAGAAAAGCCAAGTTTGGAAAGATGTTCGTTGCACCTTATTGCACCAACAAATTACCTGTTA
261 TAACAGAAAAACCAAGTTTGGAAAGATGTTCATTGCACCTTATTGCACCAACAAATTACCTGTTA
* * * *
20383055 TTCTTAACCTTGTAAACCACACTTAGTTTTCTTCTGACTATTCACGTTGTGGATCTCATCTTACT
326 TTCTTAACCTTGTAAACCACACTTAGTTTTCTGCTGACTATTCACATTGTGGATCCCATCTTACC
* *
20383120 TTTATTACATTTTATCTTTATTTTCACATCATTGCTCCGACAACCATTCTCACATTTAATTGCAT
391 TTTATTACATTTTATCTTTATTTTCACATCATTACTCCGACAACCAATCTCACATTTAATTGCAT
* *
20383185 TTTACTTATTCAATGCACCGATAATTTTAGACAACAGACACCCATCCTCGTGGGATCAATATTCA
456 TTTACTTATTCAATGCACCGACAATTCTAGACAACAGACACCCATCCTCGTGGGATCAATATTCA
* * * *
20383250 AAAGATTCACTTCTGTCTACTATACTTGCATCGACAGTGTACGCTTGCACATTGCTGTGACGTTC
521 AAAGATTCACATCTGTCTACTATACTTGCATCGACAGCGTACACTTGCACATTGCTGTGAAGTTC
* * * * *
20383315 ATATCGCGATCAAGTTTTGGTGCCGTTGCCGGGGATGATGTTTGTTTGATGTCTATTTTTGTATT
586 ATAGCGCGATCAAGTTTTGGCGACGTTGCCGAGGATGATATTTGTTTGATGTCTATTTTTGTATT
* *
20383380 TGCATTTAATCTTTATTATCTAAATTTTATTTGTCAGTAACTTGTTTCCTTTTTTTTGTTTACTT
651 TGCATTTAATCTTTATTATCTAAATTTTATTTGTCACTAACTTGTTTCCTTTTTGTTGTTTACTT
*
20383445 TTACATTTTTCTTTTAGCAAAATATGACTAGGAACGAGGTGTGTAGAACCTCAAGATGTTACACT
716 TTACATTTTTCTTTTAGCAAAATATGACTAGGAACGAGGTGTATAGAACCTCAAGATGTTACACT
* * *
20383510 AGCATAAGTGATGCTCTAGAAATGGAGCTCGATGCCATAACCGCCCAAGTATCTTCTTCCACTGA
781 AGCATAAGTGATGCTATAGAAATAGAGCTCGATGCCATAACCGCCCAAGTATCTTCTTCCACTAA
* * *
20383575 TATGAGTAATTCAATGCAAAATGCCATAATAGTTGCAGA
846 TATGAGTAATTCAATGCAAAATGCCACAACAATTGCAGA
20383614 ATGGAAGTACACTAGATATTTAGACTAATTTATACTTTATCCAAGCTTGCCTTTACTGTTTAATT
1 ATGGAAGTACACTAGATATTTAGACTAATTTATACTTTATCCAAGCTTGCCTTTACTGTTTAATT
*
20383679 TTTGGGTTTGAATGATTTTAGCA-CGGAAGTGTTATTGCAGCCACAATCACTGGAAGGTGCAATG
66 TTTGGGTTTGAATGATTTTAGCATC-GAAGTGTTATTGCAGCCACAATCACTAGAAGGTGCAATG
* ** * *
20383743 ACAGTTTAAACTAACAAGTAAGAAAACTTAAGTTGCTTGGGGATTGAAGGAATTTGGTCCACTTG
130 ACAGTTTAAACTAACAAGCAAGAAAACAGAAGTTGCTTGGGGATTGAAGGAATTTGGTCAAATTG
* * * ** *
20383808 TTCTTAAGTGTGATGCATTATCAGCACCA-AAGGTGTGGTTAGTGTGTATATTAAAGTCATAGAT
195 TTCTTAAATGTGATGCATTACCAGCACCAGAAGGTGTGGTTAGTGTGCATACAAAAATCATAGAT
* * * * *
20383872 CTAACAGAAAAACTAAGTTTGGTAAGATGTTCATTGCA-CTTCATTGCATCGACAATTTACCTGT
260 CTAACAGAAAAACCAAGTTTGGAAAGATGTTCATTGCACCTT-ATTGCACCAACAAATTACCTGT
* *
20383936 TATTCTTAACCTTGTAAGCCACACTTAGTTTTCTGCTGACTATTCA-ATTGTGGATCCCATTTTA
324 TATTCTTAACCTTGTAAACCACACTTAGTTTTCTGCTGACTATTCACATTGTGGATCCCATCTTA
* *
20384000 CCTTTATTACATTTTATCTTTATTTTCACATTATTACTCTGACAACCAATCTCACAATTT-ATTG
389 CCTTTATTACATTTTATCTTTATTTTCACATCATTACTCCGACAACCAATCTCAC-ATTTAATTG
* *
20384064 CATTTTACTTATTCAATGCACCGACAGTTCTAGACAACAGACACCCATCCTCGTGGGATCGATA-
453 CATTTTACTTATTCAATGCACCGACAATTCTAGACAACAGACACCCATCCTCGTGGGATCAATAT
* * * * *
20384128 TCTGACAGATTCACATCTGTCTACTATACTTGCATTGATAGCGTACACTTGCAAATTATTGCTGT
518 TC-AAAAGATTCACATCTGTCTACTATACTTGCATCGACAGCGTACACTTGC--A-CATTGCTGT
* *
20384193 GAAGTTCATAGCGTGATCAAGTTTTGGCGACGTTGCCGAGGATGGA-ATTTGTTTGATGTTTATT
579 GAAGTTCATAGCGCGATCAAGTTTTGGCGACGTTGCCGAGGAT-GATATTTGTTTGATGTCTATT
* * * * *
20384257 TTTTTCTTTTCATTT-ATTTTTATTATCTAAATTTTATTTGTCACTAACTTGTTTTCTTTTTGTT
643 TTTGTATTTGCATTTAATCTTTATTATCTAAATTTTATTTGTCACTAACTTGTTTCCTTTTTGTT
* * *
20384321 GTTTACTTTTACATTTTTCTTTTAGCGAAATATGGCTAGGAACGAGGTGTATATAACCTCAAGAT
708 GTTTACTTTTACATTTTTCTTTTAGCAAAATATGACTAGGAACGAGGTGTATAGAACCTCAAGAT
**
20384386 GTTGGACTAGCATAAGTGATGCTATAGAAATAGAGCTCGATGCCATAACCGCCCAAGTATCTTCT
773 GTTACACTAGCATAAGTGATGCTATAGAAATAGAGCTCGATGCCATAACCGCCCAAGTATCTTCT
** * * *
20384451 TTGACTAATATGAGTAATTTAATGCAGAATGCTACAACAATTGCAGA
838 TCCACTAATATGAGTAATTCAATGCAAAATGCCACAACAATTGCAGA
20384498 ATGGAA
1 ATGGAA
20384504 ATTTGCTGTG
Statistics
Matches: 795, Mismatches: 87, Indels: 16
0.89 0.10 0.02
Matches are distributed among these distances:
881 2 0.00
882 174 0.22
883 129 0.16
884 415 0.52
885 73 0.09
886 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (884 bp):
ATGGAAGTACACTAGATATTTAGACTAATTTATACTTTATCCAAGCTTGCCTTTACTGTTTAATT
TTTGGGTTTGAATGATTTTAGCATCGAAGTGTTATTGCAGCCACAATCACTAGAAGGTGCAATGA
CAGTTTAAACTAACAAGCAAGAAAACAGAAGTTGCTTGGGGATTGAAGGAATTTGGTCAAATTGT
TCTTAAATGTGATGCATTACCAGCACCAGAAGGTGTGGTTAGTGTGCATACAAAAATCATAGATC
TAACAGAAAAACCAAGTTTGGAAAGATGTTCATTGCACCTTATTGCACCAACAAATTACCTGTTA
TTCTTAACCTTGTAAACCACACTTAGTTTTCTGCTGACTATTCACATTGTGGATCCCATCTTACC
TTTATTACATTTTATCTTTATTTTCACATCATTACTCCGACAACCAATCTCACATTTAATTGCAT
TTTACTTATTCAATGCACCGACAATTCTAGACAACAGACACCCATCCTCGTGGGATCAATATTCA
AAAGATTCACATCTGTCTACTATACTTGCATCGACAGCGTACACTTGCACATTGCTGTGAAGTTC
ATAGCGCGATCAAGTTTTGGCGACGTTGCCGAGGATGATATTTGTTTGATGTCTATTTTTGTATT
TGCATTTAATCTTTATTATCTAAATTTTATTTGTCACTAACTTGTTTCCTTTTTGTTGTTTACTT
TTACATTTTTCTTTTAGCAAAATATGACTAGGAACGAGGTGTATAGAACCTCAAGATGTTACACT
AGCATAAGTGATGCTATAGAAATAGAGCTCGATGCCATAACCGCCCAAGTATCTTCTTCCACTAA
TATGAGTAATTCAATGCAAAATGCCACAACAATTGCAGA
Found at i:20387320 original size:37 final size:37
Alignment explanation
Indices: 20387265--20387335 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
20387255 TAATGGCGCT
* **
20387265 GCATGAGCACTTCTAGATTGCGTCCAAAACTGTCGTC
1 GCATGAGCACTTCCAGATTGCACCCAAAACTGTCGTC
20387302 GCATGAGCACTTCCAGATTGCACCCAAAACTGTC
1 GCATGAGCACTTCCAGATTGCACCCAAAACTGTC
20387336 ACCGCAAGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
GCATGAGCACTTCCAGATTGCACCCAAAACTGTCGTC
Found at i:20387361 original size:37 final size:37
Alignment explanation
Indices: 20387288--20387374 Score: 93
Period size: 37 Copynumber: 2.4 Consensus size: 37
20387278 TAGATTGCGT
** * * *
20387288 CCAAAACTGTCGTCGCATGAGCACTTCCAGATTGCAC
1 CCAAAACTGTCACCGCAAGAACACTTCCAGAATGCAC
* *
20387325 CCAAAACTGTCACCGCAAGAACATTTCCGGAATGCAC
1 CCAAAACTGTCACCGCAAGAACACTTCCAGAATGCAC
* *
20387362 GCAAGACTGTCAC
1 CCAAAACTGTCAC
20387375 TGCATAAATA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.18
Consensus pattern (37 bp):
CCAAAACTGTCACCGCAAGAACACTTCCAGAATGCAC
Found at i:20387479 original size:26 final size:26
Alignment explanation
Indices: 20387440--20387498 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
20387430 ATTGCACCCA
20387440 AGAA-TGTCGCTGCATGAACATGTAC
1 AGAATTGTCGCTGCATGAACATGTAC
* *
20387465 AGAATTGTCGTTGCATGAACATGTCC
1 AGAATTGTCGCTGCATGAACATGTAC
20387491 AGAATTGT
1 AGAATTGT
20387499 GCCCAGAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 4 0.13
26 27 0.87
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (26 bp):
AGAATTGTCGCTGCATGAACATGTAC
Found at i:20388301 original size:16 final size:16
Alignment explanation
Indices: 20388280--20388310 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20388270 TTGTGGATCG
20388280 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
20388296 CATTTTATCTTTATT
1 CATTTTACCTTTATT
20388311 TTCACATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:20389226 original size:16 final size:16
Alignment explanation
Indices: 20389205--20389235 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20389195 TTGTGGTTCC
20389205 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
20389221 CATTTTATCTTTATT
1 CATTTTACCTTTATT
20389236 TTCACATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:20392877 original size:32 final size:32
Alignment explanation
Indices: 20392836--20392916 Score: 144
Period size: 32 Copynumber: 2.5 Consensus size: 32
20392826 TTAGGTATGT
20392836 TTGCAAGAAAAGATCGCCTAAGGCCACACGGA
1 TTGCAAGAAAAGATCGCCTAAGGCCACACGGA
20392868 TTGCAAGAAAAGATCGCCTAAGGCCACACGGA
1 TTGCAAGAAAAGATCGCCTAAGGCCACACGGA
20392900 TTGCAAGACTAAAGATC
1 TTGCAAGA--AAAGATC
20392917 TAGCCTCGTG
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
32 40 0.85
34 7 0.15
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (32 bp):
TTGCAAGAAAAGATCGCCTAAGGCCACACGGA
Found at i:20407329 original size:16 final size:16
Alignment explanation
Indices: 20407310--20407365 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
20407300 AAAAATAAAG
20407310 ATGAAATGCAATAATA
1 ATGAAATGCAATAATA
***
20407326 ATGAAATGGTTTAA-A
1 ATGAAATGCAATAATA
*
20407341 GATGAAATGCAATGATA
1 -ATGAAATGCAATAATA
20407358 ATGAAATG
1 ATGAAATG
20407366 GGGTCCCTTA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
15 1 0.03
16 29 0.94
17 1 0.03
ACGTcount: A:0.50, C:0.04, G:0.20, T:0.27
Consensus pattern (16 bp):
ATGAAATGCAATAATA
Found at i:20407343 original size:32 final size:32
Alignment explanation
Indices: 20407305--20407366 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
20407295 AATGTAAAAA
20407305 TAAAGATGAAATGCAATAATAATGAAATGGTT
1 TAAAGATGAAATGCAATAATAATGAAATGGTT
*
20407337 TAAAGATGAAATGCAATGATAATGAAATGG
1 TAAAGATGAAATGCAATAATAATGAAATGG
20407367 GGTCCCTTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.26
Consensus pattern (32 bp):
TAAAGATGAAATGCAATAATAATGAAATGGTT
Found at i:20410256 original size:17 final size:18
Alignment explanation
Indices: 20410227--20410267 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
20410217 TAGATGCAGC
*
20410227 GACAATAAAAAATGTAGT
1 GACAATAAAAAATGTAGG
20410245 GACAAT-AAAAATGTAGG
1 GACAATAAAAAATGTAGG
20410262 GACAAT
1 GACAAT
20410268 TATACTATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.54, C:0.07, G:0.20, T:0.20
Consensus pattern (18 bp):
GACAATAAAAAATGTAGG
Found at i:20413520 original size:38 final size:37
Alignment explanation
Indices: 20413462--20413540 Score: 113
Period size: 38 Copynumber: 2.1 Consensus size: 37
20413452 CATTCCTAGG
* *
20413462 TGCAATTGAAGAATACTTATGCAGCGATAGTTTTGGA
1 TGCAATTGAAGAATACTTATGCAGCGACAGTCTTGGA
* *
20413499 TGCAATTTGAAGAATATTTATGCAGCGACAGTCTTGGG
1 TGCAA-TTGAAGAATACTTATGCAGCGACAGTCTTGGA
20413537 TGCA
1 TGCA
20413541 TTTCGGAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 5 0.14
38 32 0.86
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (37 bp):
TGCAATTGAAGAATACTTATGCAGCGACAGTCTTGGA
Found at i:20413602 original size:37 final size:37
Alignment explanation
Indices: 20413556--20413639 Score: 132
Period size: 37 Copynumber: 2.3 Consensus size: 37
20413546 GAAATATTCC
* * *
20413556 TGCGACGACAGTTTTGGGTGCAATCTAGAAGTGCTCA
1 TGCGGCGACAATTTTGGGGGCAATCTAGAAGTGCTCA
20413593 TGCGGCGACAATTTTGGGGGCAATCTAGAAGTGCTCA
1 TGCGGCGACAATTTTGGGGGCAATCTAGAAGTGCTCA
*
20413630 TGCAGCGACA
1 TGCGGCGACA
20413640 TTAGTAGTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TGCGGCGACAATTTTGGGGGCAATCTAGAAGTGCTCA
Found at i:20414687 original size:17 final size:17
Alignment explanation
Indices: 20414657--20414723 Score: 80
Period size: 17 Copynumber: 3.9 Consensus size: 17
20414647 AATATATATG
**
20414657 AAAATGCAATGACAATA
1 AAAATGCAGCGACAATA
* *
20414674 TAGATGCAGCGACAATA
1 AAAATGCAGCGACAATA
*
20414691 AAAATGCAGTGACAATA
1 AAAATGCAGCGACAATA
*
20414708 AAAATGCAGGGACAAT
1 AAAATGCAGCGACAAT
20414724 TATACTACAG
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.51, C:0.13, G:0.19, T:0.16
Consensus pattern (17 bp):
AAAATGCAGCGACAATA
Found at i:20414695 original size:34 final size:34
Alignment explanation
Indices: 20414657--20414723 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
20414647 AATATATATG
* *
20414657 AAAATGCAATGACAATATAGATGCAGCGACAATA
1 AAAATGCAATGACAATAAAAATGCAGCGACAATA
* *
20414691 AAAATGCAGTGACAATAAAAATGCAGGGACAAT
1 AAAATGCAATGACAATAAAAATGCAGCGACAAT
20414724 TATACTACAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.51, C:0.13, G:0.19, T:0.16
Consensus pattern (34 bp):
AAAATGCAATGACAATAAAAATGCAGCGACAATA
Found at i:20417952 original size:37 final size:37
Alignment explanation
Indices: 20417911--20417982 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
20417901 ATTCCAGCGA
* * *
20417911 TGACATTTTTTGGTGCAATCTGGAAGTGCTCATGCGG
1 TGACAGTTTTGGGTGCAATCTAGAAGTGCTCATGCGG
*
20417948 TGACAGTTTTGGGTGTAATCTAGAAGTGCTCATGC
1 TGACAGTTTTGGGTGCAATCTAGAAGTGCTCATGC
20417983 AGCGATATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.35
Consensus pattern (37 bp):
TGACAGTTTTGGGTGCAATCTAGAAGTGCTCATGCGG
Found at i:20420332 original size:11 final size:11
Alignment explanation
Indices: 20420259--20420334 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
20420249 TATTCCAAAA
*
20420259 TAATATTATTT
1 TAATATTAATT
20420270 TAATAGTTTAATAT
1 TAATA--TTAAT-T
20420284 TAA-ATTAAATT
1 TAATATT-AATT
*
20420295 TAATACTTATTT
1 TAATA-TTAATT
*
20420307 TAATAGT-ATT
1 TAATATTAATT
20420317 T--TATTAATT
1 TAATATTAATT
20420326 TAATATTAA
1 TAATATTAA
20420335 AGTGATTATC
Statistics
Matches: 51, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 3 0.06
11 18 0.35
12 12 0.24
13 7 0.14
14 4 0.08
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (11 bp):
TAATATTAATT
Found at i:20421046 original size:30 final size:30
Alignment explanation
Indices: 20421023--20421088 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
20421013 AGATAGTCGT
* *
20421023 AAAGGCGTTCACACATCGTTAGATAGGCAC
1 AAAGGCGCTCACACATCATTAGATAGGCAC
*
20421053 AAAGGCGCTCACACATCATTAGATAGCCAC
1 AAAGGCGCTCACACATCATTAGATAGGCAC
20421083 AAAGGC
1 AAAGGC
20421089 ATCCATTCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (30 bp):
AAAGGCGCTCACACATCATTAGATAGGCAC
Found at i:20421227 original size:61 final size:61
Alignment explanation
Indices: 20421155--20421280 Score: 155
Period size: 61 Copynumber: 2.1 Consensus size: 61
20421145 ATTCTCTCAA
* * * * * *
20421155 ATATAATAGGTTTCGTCACTAGAGCCCACATGTAACAGATAACT-GCGACAAAGGCTTCCAC
1 ATATAACAGGTTCCGCCACTAGAGCCCACATGGAACAGAGAA-TAGCCACAAAGGCTTCCAC
* * *
20421216 ATATAACAGGTTCCGCCACTAGGGCTCACATGGAATAGAGAATAGCCACAAAGGCTTCCAC
1 ATATAACAGGTTCCGCCACTAGAGCCCACATGGAACAGAGAATAGCCACAAAGGCTTCCAC
20421277 ATAT
1 ATAT
20421281 TTTTTGAACA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 1 0.02
61 54 0.98
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (61 bp):
ATATAACAGGTTCCGCCACTAGAGCCCACATGGAACAGAGAATAGCCACAAAGGCTTCCAC
Found at i:20421354 original size:30 final size:30
Alignment explanation
Indices: 20421286--20421401 Score: 151
Period size: 30 Copynumber: 3.9 Consensus size: 30
20421276 CATATTTTTT
* * * * * *
20421286 GAACAGCCAAAAAGTCTTCCACATATGAGA
1 GAACAACCACAAAGGCTTTCACATATCAAA
* *
20421316 GAATAACCACAAAGGCTTTCATATATCAAA
1 GAACAACCACAAAGGCTTTCACATATCAAA
20421346 GAACAACCACAAAGGCTTTCACATATCAAA
1 GAACAACCACAAAGGCTTTCACATATCAAA
*
20421376 GAACAACCATAAAGGCTTTCACATAT
1 GAACAACCACAAAGGCTTTCACATAT
20421402 AAGTAATGGT
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 75 1.00
ACGTcount: A:0.45, C:0.23, G:0.12, T:0.20
Consensus pattern (30 bp):
GAACAACCACAAAGGCTTTCACATATCAAA
Found at i:20428332 original size:15 final size:16
Alignment explanation
Indices: 20428305--20428346 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
20428295 CGAGGATAAC
*
20428305 ATCTACGATGAT-GAT
1 ATCTACGAAGATGGAT
20428320 ATCTACGAAGATGGAT
1 ATCTACGAAGATGGAT
*
20428336 A-CTATGAAGAT
1 ATCTACGAAGAT
20428347 TGGGAGATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (16 bp):
ATCTACGAAGATGGAT
Found at i:20442885 original size:10 final size:11
Alignment explanation
Indices: 20442856--20442895 Score: 55
Period size: 10 Copynumber: 3.6 Consensus size: 11
20442846 ATCACAAAAA
20442856 AAAAGAAGAAG
1 AAAAGAAGAAG
20442867 -AAAGAAGAAG
1 AAAAGAAGAAG
*
20442877 AAAAGAGAAAAG
1 AAAAGA-AGAAG
20442889 AAAAGAA
1 AAAAGAA
20442896 ATATATTGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 10 0.38
11 6 0.23
12 10 0.38
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAAG
Found at i:20442891 original size:12 final size:13
Alignment explanation
Indices: 20442858--20442894 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
20442848 CACAAAAAAA
20442858 AAGAAGAAGAA-AG
1 AAGAAGAA-AAGAG
20442871 AAGAAGAAAAGAG
1 AAGAAGAAAAGAG
20442884 AA-AAGAAAAGA
1 AAGAAGAAAAGA
20442895 AATATATTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (13 bp):
AAGAAGAAAAGAG
Found at i:20444199 original size:16 final size:16
Alignment explanation
Indices: 20444178--20444212 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
20444168 CCAGCACTAG
20444178 GAGGTGTGGCAATTGT
1 GAGGTGTGGCAATTGT
20444194 GAGGTGTGGCAATTGT
1 GAGGTGTGGCAATTGT
20444210 GAG
1 GAG
20444213 CGCTTGAGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.20, C:0.06, G:0.46, T:0.29
Consensus pattern (16 bp):
GAGGTGTGGCAATTGT
Found at i:20445678 original size:23 final size:24
Alignment explanation
Indices: 20445647--20445696 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
20445637 CCATGAATTG
20445647 TTTATGGTTGTCGAATTTGGAGAT
1 TTTATGGTTGTCGAATTTGGAGAT
* *
20445671 TTTA-GGTTGTTGAATTTGGGGAT
1 TTTATGGTTGTCGAATTTGGAGAT
20445694 TTT
1 TTT
20445697 GGATAAGAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.18, C:0.02, G:0.30, T:0.50
Consensus pattern (24 bp):
TTTATGGTTGTCGAATTTGGAGAT
Found at i:20446270 original size:21 final size:23
Alignment explanation
Indices: 20446244--20446286 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
20446234 AAATAATTTT
20446244 AATAATTTT-AT-ATTTTAAAAA
1 AATAATTTTAATAATTTTAAAAA
20446265 AATAATTTTAATAATTTTAAAA
1 AATAATTTTAATAATTTTAAAA
20446287 TCATTTGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
22 2 0.10
23 9 0.45
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
AATAATTTTAATAATTTTAAAAA
Found at i:20466384 original size:21 final size:21
Alignment explanation
Indices: 20466358--20466406 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
20466348 ATGACCAGAT
20466358 GAAGGAA-AAG-GAAAAAGAAGA
1 GAAGGAAGAAGAG-AAAA-AAGA
*
20466379 GAAGGAAGAAGAGAATAAAGA
1 GAAGGAAGAAGAGAAAAAAGA
20466400 GAAGGAA
1 GAAGGAA
20466407 CCTATCAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 18 0.72
22 6 0.24
23 1 0.04
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.02
Consensus pattern (21 bp):
GAAGGAAGAAGAGAAAAAAGA
Found at i:20467504 original size:15 final size:15
Alignment explanation
Indices: 20467464--20467509 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
20467454 TCAATCACTT
*
20467464 GAAAAAGAA-AAATGA
1 GAAAAAGAAGAAA-AA
20467479 GAAAAAGGAAGAAAAA
1 GAAAAA-GAAGAAAAA
20467495 GAAAAAGAAGAAAAA
1 GAAAAAGAAGAAAAA
20467510 AATTTATGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 15 0.54
16 10 0.36
17 3 0.11
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (15 bp):
GAAAAAGAAGAAAAA
Found at i:20469063 original size:13 final size:14
Alignment explanation
Indices: 20469034--20469063 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
20469024 TTCAGTACAT
20469034 TGACATTTAACCTC
1 TGACATTTAACCTC
20469048 TGACATTTAA-CTC
1 TGACATTTAACCTC
20469061 TGA
1 TGA
20469064 TTGCGTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:20475075 original size:15 final size:16
Alignment explanation
Indices: 20475052--20475093 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
20475042 TCCCTCAGTC
20475052 AAAAA-AAAAAGAG-A
1 AAAAAGAAAAAGAGAA
*
20475066 AAAAAGAAAAAGGGAA
1 AAAAAGAAAAAGAGAA
20475082 AGAAAAGAAAAA
1 A-AAAAGAAAAA
20475094 AAACAATATG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 5 0.21
15 7 0.29
16 2 0.08
17 10 0.42
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAGAGAA
Found at i:20476955 original size:24 final size:23
Alignment explanation
Indices: 20476915--20476959 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
20476905 ACGATCACCA
20476915 TCTCACCCCCTTATCTCTCCTTC
1 TCTCACCCCCTTATCTCTCCTTC
* *
20476938 TCTCACCTTCCTTTTCTCTCCT
1 TCTCACC-CCCTTATCTCTCCT
20476960 ATTTAGGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.07, C:0.49, G:0.00, T:0.44
Consensus pattern (23 bp):
TCTCACCCCCTTATCTCTCCTTC
Found at i:20477138 original size:30 final size:31
Alignment explanation
Indices: 20477099--20477158 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
20477089 ACTCACGAAT
20477099 TTTTCTTTTA-TTTCTACTCATTTTT-TCTTTC
1 TTTTCTTTTATTTTC-ACT-ATTTTTCTCTTTC
20477130 TTTT-TTTTATTTTCACTATTTTTCTCTTT
1 TTTTCTTTTATTTTCACTATTTTTCTCTTT
20477159 TTGGCTAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 6 0.22
30 13 0.48
31 8 0.30
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.73
Consensus pattern (31 bp):
TTTTCTTTTATTTTCACTATTTTTCTCTTTC
Found at i:20478820 original size:158 final size:155
Alignment explanation
Indices: 20478352--20478821 Score: 561
Period size: 158 Copynumber: 3.0 Consensus size: 155
20478342 CTCTGTATCA
* * * *
20478352 TGTATTGCTCACACGAGCTATGAAATGGGCCTGCTCACACGAGTTGTGGGTCGAGATG-T---TA
1 TGTAATGCTCACACGAGCTATGAAGT-GGCCTGCTCACACGAGCTGT-GGTCAAGATGTTAGCTA
* * * * *
20478413 CACGATGCTGCTCACACGAGTTGTGAAGAATCCGTAACAAAAGCCGGATCTCAACCATCGGTAGG
64 CACGATGCTGCTCACACGAGCTGTGGAGAATCCGTAACAAATGTCGGATCTCAGCCATCGGTAGG
* *
20478478 ACATCTAAGACCAACACCCATATGACA
129 ACATCTAAGACCAGCACCCATATGACC
* * * * *
20478505 TGTAATGCTCACACGAGCTGTGAAGTGTGTCTGCTCACACAAGCTGTGGATCAATAAGTTAGGCT
1 TGTAATGCTCACACGAGCTATGAAGTG-GCCTGCTCACACGAGCTGTGG-TCAAGATGTTA-GCT
* * *
20478570 ACACGATGCTACTCACACGAGCTGTGGAGAATCCGTAACAAATGTCGAATCTCAGCCATCGATAG
63 ACACGATGCTGCTCACACGAGCTGTGGAGAATCCGTAACAAATGTCGGATCTCAGCCATCGGTAG
* * *
20478635 GACATCTAAGAGCAGAACCCAAATGACC
128 GACATCTAAGACCAGCACCCATATGACC
* *
20478663 TGTAATGCTCACATGAGCTATGAAGTAGGCCAGCTCACACGAGCTGTGAGTCAAGATGTTAGACT
1 TGTAATGCTCACACGAGCTATGAAGT-GGCCTGCTCACACGAGCTGTG-GTCAAGATGTTAG-CT
* * * * * *
20478728 ACACGATGTTGCTCACACAAGCTGTGGAGAATCCGCAACAAATGTTGGATCTTAGTCATCGGTAG
63 ACACGATGCTGCTCACACGAGCTGTGGAGAATCCGTAACAAATGTCGGATCTCAGCCATCGGTAG
*
20478793 GACATCTCAGACCAGCACCCATATGACC
128 GACATCTAAGACCAGCACCCATATGACC
20478821 T
1 T
20478822 TAAACCCAGA
Statistics
Matches: 265, Mismatches: 42, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
152 3 0.01
153 44 0.17
154 1 0.00
157 1 0.00
158 214 0.81
159 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.22
Consensus pattern (155 bp):
TGTAATGCTCACACGAGCTATGAAGTGGCCTGCTCACACGAGCTGTGGTCAAGATGTTAGCTACA
CGATGCTGCTCACACGAGCTGTGGAGAATCCGTAACAAATGTCGGATCTCAGCCATCGGTAGGAC
ATCTAAGACCAGCACCCATATGACC
Found at i:20493289 original size:16 final size:16
Alignment explanation
Indices: 20493265--20493295 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20493255 AAGAAAACTA
20493265 AAATCAAATAACAAAT
1 AAATCAAATAACAAAT
*
20493281 AAATGAAATAACAAA
1 AAATCAAATAACAAA
20493296 AGAAAGATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.03, T:0.16
Consensus pattern (16 bp):
AAATCAAATAACAAAT
Found at i:20503287 original size:89 final size:89
Alignment explanation
Indices: 20503105--20503276 Score: 281
Period size: 89 Copynumber: 1.9 Consensus size: 89
20503095 ATTTTGTGAC
* * * *
20503105 CAATTTTCTTTGAAGTAAAAATGAATACCAAGTTGTATGACAAATTTTACTTTGGCCTTAAATTC
1 CAATTTTCTTTCAAGTAAAAATGAATACCAAGTTGTATAACAAATTTTAATTTGACCTTAAATTC
20503170 AAAATGCCTTTTATTAAGGGAAAG
66 AAAATGCCTTTTATTAAGGGAAAG
* *
20503194 CAATTTTCTTTCAAGTAAAAATGAATGCCAAGTTGTATAACAAATTTTAATTTGACCTTAAATTT
1 CAATTTTCTTTCAAGTAAAAATGAATACCAAGTTGTATAACAAATTTTAATTTGACCTTAAATTC
*
20503259 AAAATGTCTTTTATTAAG
66 AAAATGCCTTTTATTAAG
20503277 CGGGAGCAAT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 76 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (89 bp):
CAATTTTCTTTCAAGTAAAAATGAATACCAAGTTGTATAACAAATTTTAATTTGACCTTAAATTC
AAAATGCCTTTTATTAAGGGAAAG
Found at i:20503541 original size:20 final size:19
Alignment explanation
Indices: 20503512--20503567 Score: 67
Period size: 20 Copynumber: 2.9 Consensus size: 19
20503502 ATTTTAAAAT
* *
20503512 CAAGTTAAAATGATTTTAA
1 CAAGTCAAAATAATTTTAA
*
20503531 CCAAGTCAAAATCATTTTAA
1 -CAAGTCAAAATAATTTTAA
*
20503551 CAAATCAAAATAATTTT
1 CAAGTCAAAATAATTTT
20503568 CAAACAAGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.34
Consensus pattern (19 bp):
CAAGTCAAAATAATTTTAA
Found at i:20503560 original size:19 final size:20
Alignment explanation
Indices: 20503518--20503567 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
20503508 AAATCAAGTT
* *
20503518 AAAATGATTTTAACCAAGTC
1 AAAATAATTTTAACCAAATC
*
20503538 AAAATCATTTTAA-CAAATC
1 AAAATAATTTTAACCAAATC
20503557 AAAATAATTTT
1 AAAATAATTTT
20503568 CAAACAAGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.50, C:0.12, G:0.04, T:0.34
Consensus pattern (20 bp):
AAAATAATTTTAACCAAATC
Found at i:20518464 original size:275 final size:277
Alignment explanation
Indices: 20517790--20518560 Score: 1199
Period size: 277 Copynumber: 2.8 Consensus size: 277
20517780 TACAGTTTCT
* * *
20517790 GCTGCTCGTCAATGTGGATGATTCTGTCTAGCAAAATATTAACCAATTCTTAAGCTGCCATTGAC
1 GCTGCTCGTCAATGTGGATGATTCTGTCTAGCAAAATATTATCCAATGC-TAAGCAGCCATTGAC
* * *
20517855 CATTCTACTTCCAAGTAGACTACCAATCATGTGGATAGGATTTTCTACTGAGTAACCTTTTGCTC
65 CATTCTACTTCCAAGTAGACTACCATTCATGTGGATAGGATTTTCTACCGAGTAACCTTTTGCAC
* * *
20517920 AATGATCCATCTTTTTGGTCTAGCTGATTTATGGTAACCCTTTTTAGCAGTTCCAATAATACAAA
130 AATGATCCATCTTTTTGATCTAGCTGATTTATGGTAACCCTTTTAAGCAGTTCCAATGATACAAA
* * *
20517985 ATGTAGTTTGACCCATACCCATTCACGTGGATAGTATTTTCTACAAAATAACCTTATGCTCAGTG
195 AAGTAGTTTGACCCATACCCATTCACGTGGATAGGATTTTCTACAAAATAACCTTATGCTCAATG
20518050 ATCCATCTTTTTGATCTA
260 ATCCATCTTTTTGATCTA
* **
20518068 GCTGCTCGTCGATGTGGATGATTCTGTCT-GACAAAATATTATCCAATGCTTGGCAGCCATTGAC
1 GCTGCTCGTCAATGTGGATGATTCTGTCTAG-CAAAATATTATCCAATGCTAAGCAGCCATTGAC
* * * *
20518132 CATTCTACTTCCAAGCAGAATACCATTCATGTGGATAGGATTTTCTACCGGGTAACCTTTTGCCC
65 CATTCTACTTCCAAGTAGACTACCATTCATGTGGATAGGATTTTCTACCGAGTAACCTTTTGCAC
** *
20518197 AATGATCCATCTTTTTGATCTAGCTGATTTATGGTAGTCCTTTTAAGCAGTTCCAATGATGCAAA
130 AATGATCCATCTTTTTGATCTAGCTGATTTATGGTAACCCTTTTAAGCAGTTCCAATGATACAAA
* * * *
20518262 AAGTAGTTTGACCCATACCCATTCATGTGGATAGGATTTTCTAC-GAGTAACCTTTTGCTCAATG
195 AAGTAGTTTGACCCATACCCATTCACGTGGATAGGATTTTCTACAAAATAACCTTATGCTCAATG
20518326 ATCCA-CTTTTTGATCTA
260 ATCCATCTTTTTGATCTA
* *
20518343 GCTGCTCATCAATGTGGATGATTCTGTCTAGCAAAATATTATCCAATGCTAAACAGCCATTGACC
1 GCTGCTCGTCAATGTGGATGATTCTGTCTAGCAAAATATTATCCAATGCTAAGCAGCCATTGACC
* * *
20518408 ATTCTACTTACAAGTAGACTGCCATTCATGTGGATAGGATTTTCTACCAAGTAACCTTTTTGCAC
66 ATTCTACTTCCAAGTAGACTACCATTCATGTGGATAGGATTTTCTACCGAGTAACC-TTTTGCAC
20518473 AATGATCCATCCTTTTT-ATCTAGCTGATTTATGGTAACCCTTTTAAGCAGTTCCAATGATACAA
130 AATGATCCAT-CTTTTTGATCTAGCTGATTTATGGTAACCCTTTTAAGCAGTTCCAATGATACAA
20518537 AAAGTAGTTTGACCCATACCCATT
194 AAAGTAGTTTGACCCATACCCATT
20518561 AGCTGGATCC
Statistics
Matches: 449, Mismatches: 40, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
275 120 0.27
276 107 0.24
277 178 0.40
278 44 0.10
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (277 bp):
GCTGCTCGTCAATGTGGATGATTCTGTCTAGCAAAATATTATCCAATGCTAAGCAGCCATTGACC
ATTCTACTTCCAAGTAGACTACCATTCATGTGGATAGGATTTTCTACCGAGTAACCTTTTGCACA
ATGATCCATCTTTTTGATCTAGCTGATTTATGGTAACCCTTTTAAGCAGTTCCAATGATACAAAA
AGTAGTTTGACCCATACCCATTCACGTGGATAGGATTTTCTACAAAATAACCTTATGCTCAATGA
TCCATCTTTTTGATCTA
Found at i:20524409 original size:23 final size:23
Alignment explanation
Indices: 20524383--20524455 Score: 77
Period size: 23 Copynumber: 3.4 Consensus size: 23
20524373 TAATTTATTT
20524383 ATAAAAAATAACCTAAAATTACG
1 ATAAAAAATAACCTAAAATTACG
** *
20524406 ATAAAAAAT-A--TATTATT--T
1 ATAAAAAATAACCTAAAATTACG
20524424 AT-AAAAATAACCTAAAATTACG
1 ATAAAAAATAACCTAAAATTACG
20524446 ATAAAAAATA
1 ATAAAAAATA
20524456 TATTATTTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
17 6 0.16
18 3 0.08
20 10 0.26
22 3 0.08
23 16 0.42
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.27
Consensus pattern (23 bp):
ATAAAAAATAACCTAAAATTACG
Found at i:20524424 original size:41 final size:41
Alignment explanation
Indices: 20524377--20524472 Score: 185
Period size: 40 Copynumber: 2.4 Consensus size: 41
20524367 TTGTCATAAT
20524377 TTATTTATAAAAAATAACCTAAAATTACGATAAAAAATATA
1 TTATTTATAAAAAATAACCTAAAATTACGATAAAAAATATA
20524418 TTATTTAT-AAAAATAACCTAAAATTACGATAAAAAATATA
1 TTATTTATAAAAAATAACCTAAAATTACGATAAAAAATATA
20524458 TTATTTATAAAAAAT
1 TTATTTATAAAAAAT
20524473 GATATGAAAG
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
40 40 0.74
41 14 0.26
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.34
Consensus pattern (41 bp):
TTATTTATAAAAAATAACCTAAAATTACGATAAAAAATATA
Found at i:20525849 original size:97 final size:97
Alignment explanation
Indices: 20525678--20525871 Score: 343
Period size: 97 Copynumber: 2.0 Consensus size: 97
20525668 TCAATATCAA
*
20525678 CGATTCGTACCAGTGAATAGAATTGGATTTGTCCGTTCACTATCTAAAAAAGATAGATCTACCGT
1 CGATCCGTACCAGTGAATAGAATTGGATTTGTCCGTTCACTATCTAAAAAAGATAGATCTACCGT
*
20525743 ATCCTTCAATTGTATATAAAATTTATGGTTTC
66 ATCCTTCAATTATATATAAAATTTATGGTTTC
* * *
20525775 CGATCCGTACCAGTGAATAGAATTGGGTTTGTCCGTTCACTATCTAAAAAAGATAGATTTACTGT
1 CGATCCGTACCAGTGAATAGAATTGGATTTGTCCGTTCACTATCTAAAAAAGATAGATCTACCGT
20525840 ATCCTTCAATTATATATAAAATTTATGGTTTC
66 ATCCTTCAATTATATATAAAATTTATGGTTTC
20525872 ATTGATGCAA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
97 92 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (97 bp):
CGATCCGTACCAGTGAATAGAATTGGATTTGTCCGTTCACTATCTAAAAAAGATAGATCTACCGT
ATCCTTCAATTATATATAAAATTTATGGTTTC
Found at i:20535798 original size:22 final size:21
Alignment explanation
Indices: 20535754--20535799 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
20535744 CATAAGCTTG
**
20535754 ATTGAAATTGATAAATTTTAT
1 ATTGAAATTGATAAATTAGAT
*
20535775 ATTGAAAATTGTTAAATTAGAT
1 ATTG-AAATTGATAAATTAGAT
20535797 ATT
1 ATT
20535800 TAATGGGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (21 bp):
ATTGAAATTGATAAATTAGAT
Found at i:20536392 original size:302 final size:302
Alignment explanation
Indices: 20535846--20536450 Score: 1201
Period size: 302 Copynumber: 2.0 Consensus size: 302
20535836 TGAGTGGCCG
20535846 AACCAGGTACGTTTCGAGCCCTAAAAGATTGTTGTGATATCAAAGTGCTAGTTTGGTTGTGTGAA
1 AACCAGGTACGTTTCGAGCCCTAAAAGATTGTTGTGATATCAAAGTGCTAGTTTGGTTGTGTGAA
20535911 TTTTCTGATTGAGTTTTTGATGTGTGATTGAGTTATGTGATTTGAGAATAAATGTTTGAATAGCA
66 TTTTCTGATTGAGTTTTTGATGTGTGATTGAGTTATGTGATTTGAGAATAAATGTTTGAATAGCA
20535976 TGATATGCTGATATATTGAGTTTATGCATGATTTAAATGCATGACATATTTTCTATGATATATGT
131 TGATATGCTGATATATTGAGTTTATGCATGATTTAAATGCATGACATATTTTCTATGATATATGT
*
20536041 ATTGAAAAGGGTGCTTCATATGCATAATGAAAATTTGTAAAGGATGTGAAATTGAATGATATTGA
196 ATTGAAAAGGGTGCTTCATATGCATAATGAAAATTTGTAAAGGATGTGAAATTGAACGATATTGA
20536106 TACCATCATAATGGTAATTTGAAAGTTGGAATGTTGTTTCCT
261 TACCATCATAATGGTAATTTGAAAGTTGGAATGTTGTTTCCT
20536148 AACCAGGTACGTTTCGAGCCCTAAAAGATTGTTGTGATATCAAAGTGCTAGTTTGGTTGTGTGAA
1 AACCAGGTACGTTTCGAGCCCTAAAAGATTGTTGTGATATCAAAGTGCTAGTTTGGTTGTGTGAA
20536213 TTTTCTGATTGAGTTTTTGATGTGTGATTGAGTTATGTGATTTGAGAATAAATGTTTGAATAGCA
66 TTTTCTGATTGAGTTTTTGATGTGTGATTGAGTTATGTGATTTGAGAATAAATGTTTGAATAGCA
20536278 TGATATGCTGATATATTGAGTTTATGCATGATTTAAATGCATGACATATTTTCTATGATATATGT
131 TGATATGCTGATATATTGAGTTTATGCATGATTTAAATGCATGACATATTTTCTATGATATATGT
20536343 ATTGAAAAGGGTGCTTCATATGCATAATGAAAATTTGTAAAGGATGTGAAATTGAACGATATTGA
196 ATTGAAAAGGGTGCTTCATATGCATAATGAAAATTTGTAAAGGATGTGAAATTGAACGATATTGA
20536408 TACCATCATAATGGTAATTTGAAAGTTGGAATGTTGTTTCCT
261 TACCATCATAATGGTAATTTGAAAGTTGGAATGTTGTTTCCT
20536450 A
1 A
20536451 TTACTGAAAG
Statistics
Matches: 302, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
302 302 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (302 bp):
AACCAGGTACGTTTCGAGCCCTAAAAGATTGTTGTGATATCAAAGTGCTAGTTTGGTTGTGTGAA
TTTTCTGATTGAGTTTTTGATGTGTGATTGAGTTATGTGATTTGAGAATAAATGTTTGAATAGCA
TGATATGCTGATATATTGAGTTTATGCATGATTTAAATGCATGACATATTTTCTATGATATATGT
ATTGAAAAGGGTGCTTCATATGCATAATGAAAATTTGTAAAGGATGTGAAATTGAACGATATTGA
TACCATCATAATGGTAATTTGAAAGTTGGAATGTTGTTTCCT
Found at i:20536704 original size:27 final size:28
Alignment explanation
Indices: 20536666--20536723 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
20536656 TACCAAGGGG
*
20536666 ATTGGCGATC-TTATCGCATTATATGTT
1 ATTGGCGATCTTTATCACATTATATGTT
*
20536693 ATTGGCGATCTTTATCACATTATTTGTT
1 ATTGGCGATCTTTATCACATTATATGTT
20536721 ATT
1 ATT
20536724 TGGCAGACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 10 0.36
28 18 0.64
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.48
Consensus pattern (28 bp):
ATTGGCGATCTTTATCACATTATATGTT
Found at i:20565585 original size:21 final size:23
Alignment explanation
Indices: 20565560--20565612 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 23
20565550 GGAGAAGCCT
20565560 AAGGAAGAAGAAATG-G-AGGAA
1 AAGGAAGAAGAAATGAGAAGGAA
*
20565581 AAGGAAG--GAAATGAGAAGGAT
1 AAGGAAGAAGAAATGAGAAGGAA
*
20565602 AATGAAGAAGA
1 AAGGAAGAAGA
20565613 TGAAGGACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 6 0.23
20 1 0.04
21 17 0.65
23 2 0.08
ACGTcount: A:0.57, C:0.00, G:0.36, T:0.08
Consensus pattern (23 bp):
AAGGAAGAAGAAATGAGAAGGAA
Found at i:20568525 original size:36 final size:36
Alignment explanation
Indices: 20568474--20568610 Score: 168
Period size: 36 Copynumber: 3.8 Consensus size: 36
20568464 TTGAGCTATT
* *
20568474 CATAGCATTACGCTCTAACCGAGATGTAAACTGTCA
1 CATAGCATTACGCTCTAACCGAGACGTAAACTATCA
* * *
20568510 CATAGCATTATGCTCTAACTGAGACGT-AAGTAATCA
1 CATAGCATTACGCTCTAACCGAGACGTAAACT-ATCA
* * * * *
20568546 AATAGCATTACGCTCTAACTGAGACATAAGCAATCA
1 CATAGCATTACGCTCTAACCGAGACGTAAACTATCA
20568582 CATAGCATTACGCTCTAACCGAGACGTAA
1 CATAGCATTACGCTCTAACCGAGACGTAA
20568611 GAAATCCATC
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
35 3 0.04
36 81 0.95
37 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.24
Consensus pattern (36 bp):
CATAGCATTACGCTCTAACCGAGACGTAAACTATCA
Found at i:20568597 original size:72 final size:72
Alignment explanation
Indices: 20568475--20568616 Score: 203
Period size: 72 Copynumber: 2.0 Consensus size: 72
20568465 TGAGCTATTC
** ** * *
20568475 ATAGCATTACGCTCTAACCGAGATGTAAACTGTCACATAGCATTATGCTCTAACTGAGACGTAAG
1 ATAGCATTACGCTCTAACCGAGACATAAACAATCACATAGCATTACGCTCTAACCGAGACGTAAG
*
20568540 TAATCAA
66 AAATCAA
* *
20568547 ATAGCATTACGCTCTAACTGAGACATAAGCAATCACATAGCATTACGCTCTAACCGAGACGTAAG
1 ATAGCATTACGCTCTAACCGAGACATAAACAATCACATAGCATTACGCTCTAACCGAGACGTAAG
20568612 AAATC
66 AAATC
20568617 CATCAAAGTA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (72 bp):
ATAGCATTACGCTCTAACCGAGACATAAACAATCACATAGCATTACGCTCTAACCGAGACGTAAG
AAATCAA
Done.