Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 76 of 132
Found at i:22498448 original size:16 final size:15
Alignment explanation
Indices: 22498424--22498478 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
22498414 CCCATTTTTC
22498424 TTTTT-CTTTTCTTCT
1 TTTTTCCTTTTC-TCT
22498439 TTTTTCCTTTTCT-T
1 TTTTTCCTTTTCTCT
* *
22498453 TTTCTCTTTTTCTCT
1 TTTTTCCTTTTCTCT
22498468 TTTTTCCTTTT
1 TTTTTCCTTTT
22498479 TTTATTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
14 12 0.35
15 16 0.47
16 6 0.18
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTCCTTTTCTCT
Found at i:22498470 original size:29 final size:27
Alignment explanation
Indices: 22498419--22498478 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 27
22498409 GGCCTCCCAT
22498419 TTTTCTTTTTCTTTTCTTCTTTTTTCC
1 TTTTCTTTTTCTTTTCTTCTTTTTTCC
*
22498446 TTTTCTTTTTCTCTTTTTCTCTTTTTTCC
1 TTTTCTTTTTCT-TTTCT-TCTTTTTTCC
22498475 TTTT
1 TTTT
22498479 TTTATTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 12 0.40
28 4 0.13
29 14 0.47
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (27 bp):
TTTTCTTTTTCTTTTCTTCTTTTTTCC
Found at i:22498479 original size:16 final size:16
Alignment explanation
Indices: 22498430--22498479 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
22498420 TTTCTTTTTC
22498430 TTTTCTTCTTTTTTCC-
1 TTTTC-TCTTTTTTCCT
*
22498446 TTTTCT-TTTTCT-CT
1 TTTTCTCTTTTTTCCT
22498460 TTTTCTCTTTTTTCCT
1 TTTTCTCTTTTTTCCT
22498476 TTTT
1 TTTT
22498480 TTATTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
13 1 0.03
14 11 0.38
15 6 0.21
16 11 0.38
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTCTCTTTTTTCCT
Found at i:22498486 original size:16 final size:17
Alignment explanation
Indices: 22498451--22498488 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
22498441 TTTCCTTTTC
*
22498451 TTTTTCTCTTTTTCTCT
1 TTTTTCTCTTTTTCTAT
*
22498468 TTTTTC-CTTTTTTTAT
1 TTTTTCTCTTTTTCTAT
22498484 TTTTT
1 TTTTT
22498489 TTGGGTGAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTCTCTTTTTCTAT
Found at i:22503041 original size:29 final size:28
Alignment explanation
Indices: 22502983--22503051 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 28
22502973 AGTGTACATG
* *
22502983 ATAAAAAAACAATATATACATAATATATA
1 ATAAAATAA-AATATATACATAATAGATA
22503012 ATAAAATAAAATAATATACAT-ATAAGATA
1 ATAAAATAAAAT-ATATACATAAT-AGATA
*
22503041 AAATAAATAAA
1 ATA-AAATAAA
22503052 TAAATTACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 5 0.15
29 22 0.65
30 7 0.21
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.26
Consensus pattern (28 bp):
ATAAAATAAAATATATACATAATAGATA
Found at i:22503046 original size:31 final size:30
Alignment explanation
Indices: 22502983--22503051 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
22502973 AGTGTACATG
* * *
22502983 ATAAA-AAAACAATATATACATAATATATA
1 ATAAATAAAACAATATACACATAAGATAAA
* *
22503012 ATAAAATAAAATAATATACATATAAGATAAA
1 AT-AAATAAAACAATATACACATAAGATAAA
22503043 ATAAATAAA
1 ATAAATAAA
22503052 TAAATTACAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 2 0.06
30 10 0.30
31 21 0.64
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.26
Consensus pattern (30 bp):
ATAAATAAAACAATATACACATAAGATAAA
Found at i:22503204 original size:59 final size:60
Alignment explanation
Indices: 22503072--22503327 Score: 243
Period size: 59 Copynumber: 4.3 Consensus size: 60
22503062 TAAAATCGGA
* * * * *
22503072 TCAAATTTGAATTTTTAGAAGATTCAAGGGTTAAA-TCTGAATTTTTGGAAAATTTAGGGG
1 TCAAATTTGAATTTTTGGAAAATTCAAGGGTTAAATTC-AAATTTTTAGAAAATGTAGGGG
* * * * * *
22503132 TTAAATTGGAATTTTTGGAAAATTCGAGGGTTAAATTTAATTTTTTAGAAAA-GTCGGGG
1 TCAAATTTGAATTTTTGGAAAATTCAAGGGTTAAATTCAAATTTTTAGAAAATGTAGGGG
** * ** * * * * *
22503191 TCAAATTCAAATTTTTAGAAAATT-TGGGGTCAAATTCAAATTTCTAGAAAGTTTCGGGG
1 TCAAATTTGAATTTTTGGAAAATTCAAGGGTTAAATTCAAATTTTTAGAAAATGTAGGGG
* * *
22503250 TCAAATTTGAA-TTATGGAAAATTTAAGGGTTAAATTCAAATTTTT-GAAAAATTTAGGGG
1 TCAAATTTGAATTTTTGGAAAATTCAAGGGTTAAATTCAAATTTTTAG-AAAATGTAGGGG
22503309 TCAAATTTGAATTTTTGGA
1 TCAAATTTGAATTTTTGGA
22503328 CAGTTTAGGG
Statistics
Matches: 157, Mismatches: 34, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
58 31 0.20
59 78 0.50
60 47 0.30
61 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.38
Consensus pattern (60 bp):
TCAAATTTGAATTTTTGGAAAATTCAAGGGTTAAATTCAAATTTTTAGAAAATGTAGGGG
Found at i:22503325 original size:30 final size:30
Alignment explanation
Indices: 22503072--22503343 Score: 173
Period size: 30 Copynumber: 9.2 Consensus size: 30
22503062 TAAAATCGGA
* * *
22503072 TCAAATTTGAATTTTT-AGAAGATTCAAGGG
1 TCAAATTTGAATTTTTGA-AAAATTTAGGGG
* * *
22503102 TTAAATCTGAATTTTTGGAAAATTTAGGGG
1 TCAAATTTGAATTTTTGAAAAATTTAGGGG
* * * *
22503132 TTAAATTGGAATTTTTGGAAAA-TTCGAGGG
1 TCAAATTTGAATTTTTGAAAAATTTAG-GGG
* * * *
22503162 TTAAATTT-AATTTTTTAGAAAA-GTCGGGG
1 TCAAATTTGAATTTTTGA-AAAATTTAGGGG
**
22503191 TCAAATTCAAATTTTT-AGAAAATTT-GGGG
1 TCAAATTTGAATTTTTGA-AAAATTTAGGGG
** * * *
22503220 TCAAATTCAAATTTCT-AGAAAGTTTCGGGG
1 TCAAATTTGAATTTTTGA-AAAATTTAGGGG
* * *
22503250 TCAAATTTGAA-TTATGGAAAATTTAAGGG
1 TCAAATTTGAATTTTTGAAAAATTTAGGGG
* **
22503279 TTAAATTCAAATTTTTGAAAAATTTAGGGG
1 TCAAATTTGAATTTTTGAAAAATTTAGGGG
* * *
22503309 TCAAATTTGAATTTTTGGACAGTTTAGGGG
1 TCAAATTTGAATTTTTGAAAAATTTAGGGG
22503339 TCAAA
1 TCAAA
22503344 AAGCAAATTT
Statistics
Matches: 197, Mismatches: 37, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
29 72 0.37
30 125 0.63
ACGTcount: A:0.36, C:0.06, G:0.21, T:0.38
Consensus pattern (30 bp):
TCAAATTTGAATTTTTGAAAAATTTAGGGG
Found at i:22521830 original size:20 final size:21
Alignment explanation
Indices: 22521805--22521844 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22521795 TGCATTTTTA
*
22521805 GCATTTT-TAACTTAGTGATT
1 GCATTTTCTAACTCAGTGATT
22521825 GCATTTTCTAACTCAGTGAT
1 GCATTTTCTAACTCAGTGAT
22521845 GCTTGGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.45
Consensus pattern (21 bp):
GCATTTTCTAACTCAGTGATT
Found at i:22523502 original size:20 final size:20
Alignment explanation
Indices: 22523477--22523516 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
22523467 CCATTTGAGA
22523477 TAGTTTTTGCTTATCCACAT
1 TAGTTTTTGCTTATCCACAT
22523497 TAGTTTTTGCTTATCCACAT
1 TAGTTTTTGCTTATCCACAT
22523517 GGTGCTATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50
Consensus pattern (20 bp):
TAGTTTTTGCTTATCCACAT
Found at i:22524683 original size:15 final size:15
Alignment explanation
Indices: 22524663--22524692 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
22524653 AAAACTCAGG
22524663 TAATTTGATATGTTC
1 TAATTTGATATGTTC
22524678 TAATTTGATATGTTC
1 TAATTTGATATGTTC
22524693 GTTATGTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.13, T:0.53
Consensus pattern (15 bp):
TAATTTGATATGTTC
Found at i:22526100 original size:14 final size:14
Alignment explanation
Indices: 22526081--22526119 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
22526071 AAAGAAAAAG
22526081 AAAGAAAAA-TGTTA
1 AAAGAAAAATTG-TA
22526095 AAAGAAAAATTGTA
1 AAAGAAAAATTGTA
22526109 AAAGGAAAAAT
1 AAA-GAAAAAT
22526120 ATTTTTTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 14 0.61
15 9 0.39
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (14 bp):
AAAGAAAAATTGTA
Found at i:22526103 original size:15 final size:13
Alignment explanation
Indices: 22526070--22526119 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
22526060 GCTTAAAAAG
22526070 AAAAGAAAAA-G-
1 AAAAGAAAAATGT
22526081 -AAAGAAAAATGTT
1 AAAAGAAAAATG-T
22526094 AAAAGAAAAATTGT
1 AAAAGAAAAA-TGT
22526108 AAAAGGAAAAAT
1 AAAA-GAAAAAT
22526120 ATTTTTTAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
10 9 0.27
11 1 0.03
14 15 0.45
15 8 0.24
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (13 bp):
AAAAGAAAAATGT
Found at i:22528078 original size:32 final size:32
Alignment explanation
Indices: 22528042--22528102 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
22528032 AGCTAAAATT
* *
22528042 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATATATTTCAGGTACATGC
22528074 AATTAGCTGATTAATATATTTCAGGTACA
1 AATTAGCTGATTAATATATTTCAGGTACA
22528103 GGTATGGATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAGGTACATGC
Found at i:22543840 original size:14 final size:13
Alignment explanation
Indices: 22543815--22543853 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
22543805 AAATGAGAAA
*
22543815 AAAATAAGAAAAG
1 AAAAGAAGAAAAG
*
22543828 AGAAAGGAGAAAAG
1 A-AAAGAAGAAAAG
22543842 AAAAGAAGAAAA
1 AAAAGAAGAAAA
22543854 AAATGTTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (13 bp):
AAAAGAAGAAAAG
Found at i:22543854 original size:14 final size:14
Alignment explanation
Indices: 22543820--22543853 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
22543810 AGAAAAAAAT
22543820 AAGAAAAGAGAAAG
1 AAGAAAAGAGAAAG
*
22543834 GAGAAAAGA-AAAG
1 AAGAAAAGAGAAAG
22543847 AAGAAAA
1 AAGAAAA
22543854 AAATGTTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AAGAAAAGAGAAAG
Found at i:22547969 original size:18 final size:18
Alignment explanation
Indices: 22547946--22547988 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
22547936 GCCAATAATG
22547946 GCCACATGTAGATATATT
1 GCCACATGTAGATATATT
22547964 GCCACATGTAGATATATT
1 GCCACATGTAGATATATT
22547982 GCCACAT
1 GCCACAT
22547989 ATTTGTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (18 bp):
GCCACATGTAGATATATT
Found at i:22560268 original size:3 final size:3
Alignment explanation
Indices: 22560224--22560251 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
22560214 CCTCAGTCAC
22560224 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
22560252 ATATATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:22580426 original size:216 final size:214
Alignment explanation
Indices: 22579304--22582947 Score: 3690
Period size: 215 Copynumber: 17.0 Consensus size: 214
22579294 AGCTCACATT
* * ** * *
22579304 ATCATTAGATCTAAATAGTTACCATTTTGTAAACTACTTTCGGTCTTTGAATTAAAAACTTATTT
1 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * ** * * *
22579369 AGGCGAGAATTGTTTCTCTCTTGGTTCTTGATCGAACTTTCAAACTTGACAAACTTTTATGAGTT
66 ATGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTT
* ** *
22579434 CTTTTATAAC-TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTTGAAC
131 CTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAAC
* *
22579498 ATTCCATGCTCGAGAAATGGC
194 ATTCCATGCTCGGGAAATCGC
* *
22579519 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAATAACTTCTGGTCTTTGAATTAAAAACTTATTT
1 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * * *
22579584 -TGGTGAGAATAGTTTCTCTCTTGGTTCACGGCCGAAATTTCTAAGTTGACAAACTTTTACAAGT
66 AT-GTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGT
* * * **
22579648 TCTTTTATAAC-TTTGAATCCATAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTCCCTGAA
130 TCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAA
* * * * *
22579712 CATTCCAAGCTCAGGATATTGA
193 CATTCCATGCTCGGGAAATCGC
* *
22579734 ATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTTTTTGAATTAAAAACTTATTT
1 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * *
22579799 AGGTGATAATAGTTTCTCTATTGGTTCTCAGCCAAACTTCCGAACTTGACAAACTTTTACGAGTT
66 ATGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTT
* * * * * *
22579864 CTTTTTTAACTTCTGTTCCTTAAAGAATTCAAGATGATCCATTCCTTTGAACAAATTTTCGAACA
131 CTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AATTTTCGAACA
* * *
22579929 TTTCATGCTCGAGAAATTGC
195 TTCCATGCTCGGGAAATCGC
*
22579949 ATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
1 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * * * * *
22580014 A-GATGATAATAGTTCCTCTCTTGGTTCTAGGCAGAACTTCCGAACTTGACAAGCATTTAGGTGT
66 ATG-TGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGT
* * * *
22580078 TCTTTTTTAAC-TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGCGCAATTTTTGAAC
130 TCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCGAAC
* **
22580142 ATTCCATGCTGGGGAAATCAT
194 ATTCCATGCTCGGGAAATCGC
* * * * *
22580163 ATCAATTGTTCTAAATAGATTGTAATTTGGTAAACAACTTTTGGTCTTT-AAGTTAAAAAGTTAT
1 ATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAACTTAT
* * * *
22580227 TTATGTAAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTCCGAACTTGACAAACTTTTACGAG
64 TTATGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAG
* * * *
22580292 TTTTTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCCATTTTCCAT
129 -TTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCGA-
* *
22580357 ACAATCCATGCTTGGGAAATCGC
192 ACATTCCATGCTCGGGAAATCGC
* * * * *
22580380 TTCATTAGATCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACATATTT
1 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * * * *
22580445 AGGTGAGCATTGTTTCTCTCTTGGTTCTCGACCGAACTTTCAAACTTGACAAACTGTTACGAGTT
66 ATGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTT
** * * *
22580510 CTTTTATAACTTCAGTTCCTTAAAGTATTAAAGATGATCCATTCCTTTGAGCAATTTTTCGAACA
131 CTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAACA
* *
22580575 TTCCATGCTCGAGAAATGGC
195 TTCCATGCTCGGGAAATCGC
*
22580595 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTT
1 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * * *
22580660 -TGGTGAGAATAGTTTCTCTCTTGGTTCACAGCCAAACTTTCGAAGTTGACAAACTTTTACAAGT
66 AT-GTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGT
* * * **
22580724 TCTTTTATAAC-TTTGAATCCATAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTCCCTGAA
130 TCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAA
* * * * *
22580788 CATTCCAAGCTCAGGATATTGA
193 CATTCCATGCTCGGGAAATCGC
* * *
22580810 ATCATTTGGTCTAAATAGTTGTCATTTTATAAACAAATTTTGGTTTTTGAATT-AAAACTTATTT
1 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * *
22580874 AGGTGATAATAGTTTCTCTATTGGTTCTCAGCCGAACTTCCGAACTTGACAAACTTTTAGGAGTT
66 ATGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTT
* * * * * **
22580939 CTTTTTTAACTTCTATTCCTTAAAGAATTCAAGACGATCCATTCCTTCAAGCAATTTTTAAAACA
131 CTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAACA
*
22581004 TTCCATGCTCGGGAAATCAC
195 TTCCATGCTCGGGAAATCGC
* * * *** * * *
22581024 ATCAATTGTTCTAAATAGATTGTCATTTTGTAAAAAAAAGTT-AT-TTATG--TT-AGAA-TTGT
1 ATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTT-TGAATTAAAAACTTAT
* * * * * **** * * *
22581083 TTCT-T-----T-CTTTGT-TCTT-GATCGAACTTTTGAACTTGACAAACTT----TA-----AC
64 TTATGTGAGAATAGTTTCTCTCTTGGTTC--TCGGCCGAACTT-CCGAACTTGACAAACTTTTAC
* *
22581130 GAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
126 GAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCG
* ** * *
22581195 ATACAATCCATAAAT-AGGAAATCTC
191 A-ACATTCCAT-GCTCGGGAAATCGC
* *
22581220 ATCATTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTT
1 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * ** * *
22581285 AGGAGAGAATTGTTTCTCTCTTGCTTCTCGATCGAAGATT-TGAACTTGACAAACTTTTACGAGT
66 ATGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAA-CTTCCGAACTTGACAAACTTTTACGAGT
* * *
22581349 TCTTTTATAACTTTAGTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAAC
130 TCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAAC
**
22581414 ATTCCATGCTCAAGAAATCGC
194 ATTCCATGCTCGGGAAATCGC
* * * * *
22581435 GTCATTTGTTCTAAATAGTTGTCATTTTATAAAACAACTTTTTGTCTTTGAATTAAAAACTGATT
1 ATCATTTGGTCTAAATAGTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATT
* * * ** * *
22581500 TA-GATGACAATAGTTCCTCTCTTGGTTCTAGGCAAAACTTCCGAACCTGACAAACATTTACGAG
65 TATG-TGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAG
* ** * * * * *
22581564 TTCTTTTTTAACTTCGGTTCCTTACAGTATTCAAGACGGTCCATTCCTTTGCGTAATTTTCTGAA
129 TTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAA
* * *
22581629 CATTCCATGCTTGGCAAATCGT
193 CATTCCATGCTCGGGAAATCGC
* * * * *
22581651 ATCAATTGTTCTAAATAGATTTTCATTTCGTAAACAACTTTTGTTCTTTGAATTAAAAACTTATT
1 ATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
* * * * *
22581716 TAGGTGATAATAGTTTCTTTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAACTTTTACGAGT
65 TATGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGT
* * * * *
22581781 T-TTTTATAACTTTTGTTCCTTAAAGTATTAAAGATGATCTATACCTTCGAGCAATTTTTTGAAC
130 TCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAAC
* * *
22581845 ATTCCATTCTCGAGAAATCAC
194 ATTCCATGCTCGGGAAATCGC
* * * ** * *
22581866 ATCAATTGTTCTAAATAGATTGTCATTTTGTAAAAAAAATTT-GTTTTTGAATTAAAAACTTATA
1 ATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
* * ** *
22581930 TATGTGAGAATTGTTTCTCTCTAGGTTCTCGGCCGAACTTCTAAACTTGTCAAACTTTTACGAGT
65 TATGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGT
* * * *
22581995 TCTTTTATAGCTTTTCTTCCTTAAA-TATTCAAGACGATCCATTCCTCCGAGCCACTTTTCGAAC
130 TCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-CAATTTTCGAAC
*
22582059 AATCCA-GCTCGGGAAATCGC
194 ATTCCATGCTCGGGAAATCGC
* ***
22582079 ATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTCCAT
1 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * * * * *
22582144 A-GATGATAATAGATCCTCTCTTGGTTCTAGGCTGAACTTCCAAATTTGACAAACATTTACGAGT
66 ATG-TGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGT
* * * * *
22582208 TCTTTTTTAAC-TTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTGCA-CAATTTCCCGA
130 TCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AGCAATTT-TCGA
* *
22582271 ACATTCCATGCTTGGGAAATCGT
192 ACATTCCATGCTCGGGAAATCGC
* * * * *
22582294 ATCAATTGTTCTAAATAGATTGTCATTTTGTTAACAACTTTTGGTCTTTAAATTAAAAAGTTATT
1 ATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
* * * ** * * *
22582359 TATGTGAGAATTGTTTCTTTCTTGGTTCACAACCAAACATT-CGAAGTTGACAAACTTTTATGAG
65 TATGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAAC-TTCCGAACTTGACAAACTTTTACGAG
** ** * **
22582423 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATTATCCATTCTTTCGAGCAATTCCCTGAA
129 TTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAA
* *
22582488 CATTCCAAGCTCAGGAAATCGC
193 CATTCCATGCTCGGGAAATCGC
* * * ***
22582510 ATGATTTGGTCTAAATAGTTGTTATTTTATAAACAACTTTTTACCTTTGAATTAAAAACTTATTT
1 ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * * * * *
22582575 AGGTGATAATGGTTTCTCTCTAGGTTCTCGACCAAACTTCCGAACTTTA-AAAATCTTTACGAGT
66 ATGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACT-TTTACGAGT
* ** * * *
22582639 TCTTTTTTAACTTCGGTTCCTTAAAGTATTAAAGACGATCTATACCTTCGAGCAATTTTTCGAAC
130 TCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAAC
*
22582704 ATTCCATTCTCGGGAAATCGC
194 ATTCCATGCTCGGGAAATCGC
* * * *** *
22582725 ATCAATTGTTCTAAATAGATTGTCATTTTGTAAAAAAAAATTGGTCTTTGAATTAAAAACTTATA
1 ATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
* * * * *
22582790 TATGTGAGAATTA-TTTCTCTCTAGGTTCTCGACCAAACTTCTGAACTTGACAAACTTTTATGAG
65 TATGTGAGAA-TAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAG
* * *
22582854 TTCTTTTATAACTTTTCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCCATTTTCCAAA
129 TTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-CGAA
* * *
22582919 CAATCCATGCTCGAGAAATTGC
193 CATTCCATGCTCGGGAAATCGC
22582941 ATCATTT
1 ATCATTT
22582948 TGATATGAGC
Statistics
Matches: 2820, Mismatches: 525, Indels: 167
0.80 0.15 0.05
Matches are distributed among these distances:
195 23 0.01
196 88 0.03
197 3 0.00
198 2 0.00
199 3 0.00
200 5 0.00
201 1 0.00
202 3 0.00
203 3 0.00
204 11 0.00
205 7 0.00
206 6 0.00
207 9 0.00
208 6 0.00
209 2 0.00
210 2 0.00
211 5 0.00
212 27 0.01
213 123 0.04
214 346 0.12
215 1345 0.48
216 742 0.26
217 58 0.02
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (214 bp):
ATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
ATGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTT
CTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCGAACAT
TCCATGCTCGGGAAATCGC
Found at i:22580513 original size:431 final size:429
Alignment explanation
Indices: 22579313--22582947 Score: 3996
Period size: 431 Copynumber: 8.5 Consensus size: 429
22579303 TATCATTAGA
** * * * *
22579313 TCTAAATAG-TTACCATTTTGTAAACTACTTTCGGTCTTTGAATTAAAAACTTATTTAGGCGAGA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGA
* ** * * * *
22579377 ATTGTTTCTCTCTTGGTTCTTGATCGAACTTTCAAACTTGACAAACTTTTATGAGTTCTTTTATA
66 ATTGTTTCTCTCTTGGTTCTCGGCCAAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATA
* ** * **
22579442 AC-TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTTGAACATTCCATG
131 ACTTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCCA-TTTTCCAACATTCCATG
* * * * *
22579506 CTCGAGAAATGGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAATAACTTCTGGTCTTTGAAT
194 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAAT
* * * * * * * *
22579571 TAAAAACTTATTTTGGTGAGAATAGTTTCTCTCTTGGTTCACGGCCGAAATTTCTAAGTTGACAA
259 TAAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGACCGAACTTCCGAACTTGACAA
* * * * *
22579636 ACTTTTACAAGTTCTTTTATAACTTTGAATCCATAAAGTATTCAAGATGATCCATTCCTTCGAGC
324 ACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
** * * * * * *
22579701 AATTCCCTGAACATTCCAAGCTCAGGATATTGA-ATCATTTGG
389 AATT-TTTGAACATTCCATGCTCGGGA-AATCACATCAATTGT
* * * *
22579743 TCTAAATAG-TTGTCATTTTATAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTAGGTGATA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGA
* * * *
22579807 ATAGTTTCTCTATTGGTTCTCAGCCAAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTTTA
66 ATTGTTTCTCTCTTGGTTCTCGGCCAAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATA
* * * * * * * *
22579872 ACTTCTGTTCCTTAAAGAATTCAAGATGATCCATTCCTTTGAACAAATTTTCGAACATTTCATGC
131 ACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-CATTTTCCAACATTCCATGC
* *
22579937 TCGAGAAATTGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATT
195 TCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATT
* * * * * *
22580002 AAAAACTTATTTAGATGATAATAGTTCCTCTCTTGGTTCTAGGCAGAACTTCCGAACTTGACAAG
260 AAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGACCGAACTTCCGAACTTGACAAA
* * * * *
22580067 CATTTAGGTGTTCTTTTTTAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGCGCA
325 CTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* *
22580132 ATTTTTGAACATTCCATGCTGGGGAAATCATATCAATTGT
390 ATTTTTGAACATTCCATGCTCGGGAAATCACATCAATTGT
* * * *
22580172 TCTAAATAGATTGTAATTTGGTAAACAACTTTTGGTCTTT-AAGTTAAAAAGTTATTTATGTAAG
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAACTTATTTATGTGAG
* * * *
22580236 AATTGTTTCTTTCTTGGTTCTCGGTCGAACTTCCGAACTTGACAAACTTTTACGAGTTTTTTTTA
65 AATTGTTTCTCTCTTGGTTCTCGGCCAAACTTCCGAACTTGACAAACTTTTACGAG-TTCTTTTA
* *
22580301 TAACTTTTGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCCATTTTCCATACAATCCAT
129 TAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCCATTTTCCA-ACATTCCAT
* * * * * *
22580366 GCTTGGGAAATCGCTTCATTAGATCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAA
193 GCTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAA
* ** * * *
22580431 TTAAAAACATATTTAGGTGAGCATTGTTTCTCTCTTGGTTCTCGACCGAACTTTCAAACTTGACA
258 TTAAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGACCGAACTTCCGAACTTGACA
* * * *
22580496 AACTGTTACGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTATTAAAGATGATCCATTCCTTTGA
323 AACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* ** * *
22580560 GCAATTTTTCGAACATTCCATGCTCGAGAAATGGCATCATTTGG
387 GCAATTTTT-GAACATTCCATGCTCGGGAAATCACATCAATTGT
*
22580604 TCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTT-TGGTGAG
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAT-GTGAG
* * * * * *
22580667 AATAGTTTCTCTCTTGGTTCACAGCCAAACTTTCGAAGTTGACAAACTTTTACAAGTTCTTTTAT
65 AATTGTTTCTCTCTTGGTTCTCGGCCAAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTAT
* * * * *
22580732 AAC-TTTGAATCCATAAAGTATTCAAGATGATCCATTCCTTCGAG-CAATTCCCTGAACATTCCA
130 AACTTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCCATTTTCC--AACATTCCA
* * * * * * *
22580795 AGCTCAGGATATTGAATCATTTGGTCTAAATAGTTGTCATTTTATAAACAAATTTTGGTTTTTGA
192 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGA
*
22580860 ATT-AAAACTTATTTAGGTGATAATAGTTTCTCTATTGGTTCTC-AGCCGAACTTCCGAACTTGA
257 ATTAAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGA-CCGAACTTCCGAACTTGA
* * * * *
22580923 CAAACTTTTAGGAGTTCTTTTTTAACTTCTATTCCTTAAAGAATTCAAGACGATCCATTCCTTCA
321 CAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
*
22580988 AGCAATTTTTAAAACATTCCATGCTCGGGAAATCACATCAATTGT
386 AGCAATTTTT-GAACATTCCATGCTCGGGAAATCACATCAATTGT
* *
22581033 TCTAAATAGATTGTCATTTTGT-----A-------------AA--AAAAAGTTATTTATGTTAGA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGA
* * * ** * ** *
22581078 ATTGTTTCTTTCTTTGTTCTTGATCGAACTTTTGAACTTGACAAACTTTAACGAGTTCTTTTATA
66 ATTGTTTCTCTCTTGGTTCTCGGCCAAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATA
* * * *
22581143 ACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCATACAATCCATAA
131 ACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCCATTTTCCA-ACATTCCAT-G
* * * * * *
22581208 AT-AGGAAATCTCATCATTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAAT
194 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAAT
* * * * * * *
22581272 TAAAAACTTATTTAGGAGAGAATTGTTTCTCTCTTGCTTCTCGATCGAAGATT-TGAACTTGACA
259 TAAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGACCGAA-CTTCCGAACTTGACA
* *
22581336 AACTTTTACGAGTTCTTTTATAACTT-TAGTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGA
323 AACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
** * * *
22581400 GCAATTTTTTGAACATTCCATGCTCAAGAAATCGCGTCATTTGT
387 GCAA-TTTTTGAACATTCCATGCTCGGGAAATCACATCAATTGT
* * *
22581444 TCTAAATAG-TTGTCATTTTATAAAACAACTTTTTGTCTTTGAATTAAAAACTGATTTA-GATGA
1 TCTAAATAGATTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATG-TGA
* * * * * * * *
22581507 CAATAGTTCCTCTCTTGGTTCTAGGCAAAACTTCCGAACCTGACAAACATTTACGAGTTCTTTTT
64 GAATTGTTTCTCTCTTGGTTCTCGGCCAAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTA
** * * * * ** *
22581572 TAACTTCGGTTCCTTACAGTATTCAAGACGGTCCATTCCTTTGCGTAATTTTCTGAACATTCCAT
129 TAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCCATTTTC-CAACATTCCAT
* * * * * * ** *
22581637 GCTTGGCAAATCGTATCAATTGTTCTAAATAGATTTTCATTTCGTAAACAACTTTTGTTCTTTGA
193 GCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTATAAACAACTTTTGGTCTTTGA
* ** *
22581702 ATTAAAAACTTATTTAGGTGATAATAGTTTCTTTCTTGGTTCTCGGTCGAACTTTCGAACTTGAC
257 ATTAAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGACCGAACTTCCGAACTTGAC
* * * * *
22581767 AAACTTTTACGAGTT-TTTTATAACTTTTG-TTCCTTAAAGTATTAAAGATGATCTATACCTTCG
322 AAACTTTTACGAGTTCTTTTATAAC-TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* *
22581830 AGCAATTTTTTGAACATTCCATTCTCGAGAAATCACATCAATTGT
386 AGCAA-TTTTTGAACATTCCATGCTCGGGAAATCACATCAATTGT
* ** * *
22581875 TCTAAATAGATTGTCATTTTGTAAAAAAAATTT-GTTTTTGAATTAAAAACTTATATATGTGAGA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGA
* * ** *
22581939 ATTGTTTCTCTCTAGGTTCTCGGCCGAACTTCTAAACTTGTCAAACTTTTACGAGTTCTTTTATA
66 ATTGTTTCTCTCTTGGTTCTCGGCCAAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATA
* * * * *
22582004 GCTTTTCTTCCTTAAA-TATTCAAGACGATCCATTCCTCCGAGCCACTTTTCGAACAATCCA-GC
131 ACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCCA-TTTTCCAACATTCCATGC
22582067 TCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATT
195 TCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATT
*** * * * * * * * *
22582132 AAAAACTTCCATAGATGATAATAGATCCTCTCTTGGTTCTAGGCTGAACTTCCAAATTTGACAAA
260 AAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGACCGAACTTCCGAACTTGACAAA
* * * *
22582197 CATTTACGAGTTCTTTTTTAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTGCA-C
325 CTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AGC
** * **
22582261 AATTTCCCGAACATTCCATGCTTGGGAAATCGTATCAATTGT
389 AATTT-TTGAACATTCCATGCTCGGGAAATCACATCAATTGT
* * *
22582303 TCTAAATAGATTGTCATTTTGTTAACAACTTTTGGTCTTTAAATTAAAAAGTTATTTATGTGAGA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGA
* * ** * *
22582368 ATTGTTTCTTTCTTGGTTCACAACCAAACATT-CGAAGTTGACAAACTTTTATGAGTTCTTTTAT
66 ATTGTTTCTCTCTTGGTTCTCGGCCAAAC-TTCCGAACTTGACAAACTTTTACGAGTTCTTTTAT
** ** * * * *
22582432 AACTTCGGTTCCTTAAAGTATTCAAGATTATCCATTCTTTCGAG-CAATTCCCTGAACATTCCAA
130 AACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCCATTTTCC--AACATTCCAT
* * * ***
22582496 GCTCAGGAAATCGCATGATTTGGTCTAAATAGTTGTTATTTTATAAACAACTTTTTACCTTTGAA
193 GCTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAA
* * * *
22582561 TTAAAAACTTATTTAGGTGATAATGGTTTCTCTCTAGGTTCTCGACCAAACTTCCGAACTTTA-A
258 TTAAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGACCGAACTTCCGAACTTGACA
* * * * * *
22582625 AAATCTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTAAAGACGATCTATACCTTCGA
323 AACT-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* *
22582690 GCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCAATTGT
387 GCAATTTTT-GAACATTCCATGCTCGGGAAATCACATCAATTGT
* *** *
22582734 TCTAAATAGATTGTCATTTTGTAAAAAAAAATTGGTCTTTGAATTAAAAACTTATATATGTGAGA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGA
* * * * *
22582799 ATTATTTCTCTCTAGGTTCTCGACCAAACTTCTGAACTTGACAAACTTTTATGAGTTCTTTTATA
66 ATTGTTTCTCTCTTGGTTCTCGGCCAAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATA
* *
22582864 ACTTTTCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCCATTTTCCAAACAATCCATGC
131 ACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCCATTTTCC-AACATTCCATGC
* *
22582929 TCGAGAAATTGCATCATTT
195 TCGGGAAATCGCATCATTT
22582948 TGATATGAGC
Statistics
Matches: 2674, Mismatches: 458, Indels: 145
0.82 0.14 0.04
Matches are distributed among these distances:
409 1 0.00
410 176 0.07
411 159 0.06
412 10 0.00
416 1 0.00
425 1 0.00
427 100 0.04
428 133 0.05
429 325 0.12
430 687 0.26
431 926 0.35
432 155 0.06
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (429 bp):
TCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGA
ATTGTTTCTCTCTTGGTTCTCGGCCAAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATA
ACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCCATTTTCCAACATTCCATGCT
CGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTA
AAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGACCGAACTTCCGAACTTGACAAAC
TTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
TTTTTGAACATTCCATGCTCGGGAAATCACATCAATTGT
Found at i:22581450 original size:215 final size:216
Alignment explanation
Indices: 22581058--22582947 Score: 1943
Period size: 216 Copynumber: 8.8 Consensus size: 216
22581048 ATTTTGTAAA
* * * * * * * *
22581058 AAAAAGTTATTTATGTTAGAATTGTTTCTTTCTTTGTTCTTGATCGAACTTTTGAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGATCGAAATTCTGAACTTGACAAA
* *
22581123 CTTTAACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
66 CTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * ** * * * *
22581188 A-TTTTCCATACAATCCATAAAT-AGGAAATCTCATCATTAGGTCTAAATAG-TTGTCATTTTGT
131 ATTTTTCGA-ACATTCCAT-GCTCGGGAAATCGCATCATTTGTTCTAAATAGATTGTCATTTTGT
*
22581250 AAACTACTTTTGGTCTTTGAATT
194 AAACAACTTTTGGTCTTTGAATT
* *
22581273 AAAAACTTATTTAGGAGAGAATTGTTTCTCTCTTGCTTCTCGATCGAAGATT-TGAACTTGACAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGATCGAA-ATTCTGAACTTGACAA
* *
22581337 ACTTTTACGAGTTCTTTTATAACTTTAGTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGC
65 ACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* ** * *
22581402 AATTTTTTGAACATTCCATGCTCAAGAAATCGCGTCATTTGTTCTAAATAG-TTGTCATTTTATA
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGTTCTAAATAGATTGTCATTTTGT-
*
22581466 AAACAACTTTTTGTCTTTGAATT
194 AAACAACTTTTGGTCTTTGAATT
* * * * * * * * * *
22581489 AAAAACTGATTTAGATGACAATAGTTCCTCTCTTGGTTCTAG-GCAAAACTTCCGAACCTGACAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGATCGAAA-TTCTGAACTTGACAA
* * ** * * * * *
22581553 ACATTTACGAGTTCTTTTTTAACTTCGGTTCCTTACAGTATTCAAGACGGTCCATTCCTTTGCGT
65 ACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * *
22581618 AA-TTTTCTGAACATTCCATGCTTGGCAAATCGTATCAATTGTTCTAAATAGATTTTCATTTCGT
130 AATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGTTCTAAATAGATTGTCATTTTGT
*
22581682 AAACAACTTTTGTTCTTTGAATT
194 AAACAACTTTTGGTCTTTGAATT
* * * * *
22581705 AAAAACTTATTTAGGTGATAATAGTTTCTTTCTTGGTTCTCGGTCGAACTT-TCGAACTTGACAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGATCGAAATTCT-GAACTTGACAA
* * * *
22581769 ACTTTTACGAGTT-TTTTATAACTTTTGTTCCTTAAAGTATTAAAGATGATCTATACCTTCGAGC
65 ACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * *
22581833 AATTTTTTGAACATTCCATTCTCGAGAAATCACATCAATTGTTCTAAATAGATTGTCATTTTGTA
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGTTCTAAATAGATTGTCATTTTGTA
* ** *
22581898 AAAAAAATTT-GTTTTTGAATT
195 AACAACTTTTGGTCTTTGAATT
* * * ** * * *
22581919 AAAAACTTATATATGTGAGAATTGTTTCTCTCTAGGTTCTCGGCCGAACTTCTAAACTTGTCAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGATCGAAATTCTGAACTTGACAAA
* * * *
22581984 CTTTTACGAGTTCTTTTATAGCTTTTCTTCCTTAAA-TATTCAAGACGATCCATTCCTCCGAGCC
66 CTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * *
22582048 ACTTTTCGAACAATCCA-GCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTATAA
131 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGTTCTAAATAGATTGTCATTTTGTAA
22582111 ACAACTTTTGGTCTTTGAATT
196 ACAACTTTTGGTCTTTGAATT
*** * * * * * * * * ** *
22582132 AAAAACTTCCATAGATGATAATAGATCCTCTCTTGGTTCTAG-GCTGAACTTCCAAATTTGACAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGATC-GAAATTCTGAACTTGACAA
* * * * *
22582196 ACATTTACGAGTTCTTTTTTAAC-TTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTGCA
65 ACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-A
** * * *
22582260 -CAATTTCCCGAACATTCCATGCTTGGGAAATCGTATCAATTGTTCTAAATAGATTGTCATTTTG
128 GCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGTTCTAAATAGATTGTCATTTTG
* *
22582324 TTAACAACTTTTGGTCTTTAAATT
193 TAAACAACTTTTGGTCTTTGAATT
* * * * * * * *
22582348 AAAAAGTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCACAACCAAACATTC-GAAGTTGACAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGATCGAA-ATTCTGAACTTGACAA
* ** ** *
22582412 ACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATTATCCATTCTTTCGAGC
65 ACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
** * * * * * *
22582477 AA-TTCCCTGAACATTCCAAGCTCAGGAAATCGCATGATTTGGTCTAAATAG-TTGTTATTTTAT
130 AATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGTTCTAAATAGATTGTCATTTTGT
***
22582540 AAACAACTTTTTACCTTTGAATT
194 AAACAACTTTTGGTCTTTGAATT
* * * * * *
22582563 AAAAACTTATTTAGGTGATAATGGTTTCTCTCTAGGTTCTCGA-CCAAACTTCCGAACTTTA-AA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGATCGAAA-TTCTGAACTTGACAA
* * ** * * *
22582626 AATCTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTAAAGACGATCTATACCTTCGAG
65 ACT-TTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* *
22582691 CAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCAATTGTTCTAAATAGATTGTCATTTTGT
129 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGTTCTAAATAGATTGTCATTTTGT
* ***
22582756 AAAAAAAAATTGGTCTTTGAATT
194 AAACAACTTTTGGTCTTTGAATT
* * * * *
22582779 AAAAACTTATATATGTGAGAATTATTTCTCTCTAGGTTCTCGA-CCAAACTTCTGAACTTGACAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGATCGAAA-TTCTGAACTTGACAA
* *
22582843 ACTTTTATGAGTTCTTTTATAACTTTTCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
65 ACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * *
22582908 CATTTTCCAAACAATCCATGCTCGAGAAATTGCATCATTT
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTT
22582948 TGATATGAGC
Statistics
Matches: 1379, Mismatches: 265, Indels: 61
0.81 0.16 0.04
Matches are distributed among these distances:
212 22 0.02
213 115 0.08
214 158 0.11
215 482 0.35
216 580 0.42
217 22 0.02
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGATCGAAATTCTGAACTTGACAAA
CTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGTTCTAAATAGATTGTCATTTTGTAA
ACAACTTTTGGTCTTTGAATT
Found at i:22583996 original size:48 final size:48
Alignment explanation
Indices: 22583924--22584041 Score: 179
Period size: 48 Copynumber: 2.5 Consensus size: 48
22583914 TTAATGCAAG
*
22583924 GCATTTAACAAACAAAACAGTTAATAATACAGATTACTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATACAGATTACTAAACAAAGAT
* * *
22583972 GCATTTAACAAACAAAACACTTAATGATGCAGATTACTAAATAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATACAGATTACTAAACAAAGAT
22584020 GCATTT-A-AAA-AAAACACTTAAT
1 GCATTTAACAAACAAAACACTTAAT
22584042 GAAGCATAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
45 12 0.18
46 3 0.05
47 1 0.02
48 50 0.76
ACGTcount: A:0.53, C:0.14, G:0.08, T:0.25
Consensus pattern (48 bp):
GCATTTAACAAACAAAACACTTAATAATACAGATTACTAAACAAAGAT
Found at i:22587142 original size:17 final size:18
Alignment explanation
Indices: 22587120--22587163 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
22587110 CACAACCTCC
*
22587120 TTTTCTTTTTCT-TTTAT
1 TTTTCTTTTTCTCTCTAT
*
22587137 TTTTCTTTTTCTCTCTGT
1 TTTTCTTTTTCTCTCTAT
22587155 TTTTCTTTT
1 TTTTCTTTT
22587164 CCCTCATGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTCTTTTTCTCTCTAT
Found at i:22589356 original size:18 final size:18
Alignment explanation
Indices: 22589335--22589376 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
22589325 TTGCCACGAA
22589335 TTTTTTTTCT-AAATTGT
1 TTTTTTTTCTCAAATTGT
*
22589352 CTTTTTTTTCTCAATTTGT
1 -TTTTTTTTCTCAAATTGT
22589371 TTTTTT
1 TTTTTT
22589377 CTTTGTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.12, C:0.10, G:0.05, T:0.74
Consensus pattern (18 bp):
TTTTTTTTCTCAAATTGT
Found at i:22590547 original size:48 final size:48
Alignment explanation
Indices: 22590478--22590596 Score: 166
Period size: 48 Copynumber: 2.5 Consensus size: 48
22590468 ATGCAAGGCG
**
22590478 TTTAACAAACAAAACGGTTAATAATACAGATTACTAAACAAAGATGCA
1 TTTAACAAACAAAACACTTAATAATACAGATTACTAAACAAAGATGCA
* * * *
22590526 TTTAACAAACAAAACACTTAATGATGCAGATTATTAAACAATGATGCA
1 TTTAACAAACAAAACACTTAATAATACAGATTACTAAACAAAGATGCA
*
22590574 TTTAACAAAAAAAAACACTTAAT
1 TTTAAC-AAACAAAACACTTAAT
22590597 GAAGCATACA
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
48 48 0.76
49 15 0.24
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.25
Consensus pattern (48 bp):
TTTAACAAACAAAACACTTAATAATACAGATTACTAAACAAAGATGCA
Found at i:22591276 original size:214 final size:215
Alignment explanation
Indices: 22590907--22593172 Score: 1426
Period size: 215 Copynumber: 10.6 Consensus size: 215
22590897 TCACATTTGG
* * ** * * * * * * *
22590907 TCTAAATAG-TTGTCATTTTATAAAAAAAATTTGGTCTTTGAATTAAAAACTTCTATAGATGATA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGATATTTAAATTAAAAACTTATTTAGGTGAAA
* * * * * * * *
22590971 ATAGATCCTCTCTTGGCTCT-AGGCTAAACTTTCGAACTTGACAAACATTTACGAGTTCTTTTTT
66 ATAGTTTCTCTATTGGATCTCA-GCCAAACATTCGAACTTGACAAACTTTTACAAGTTCTTTTTT
* * *
22591035 AAGTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGCA-TAATTTTTC-GAACATTTCA
130 AACTTC-GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCG-AGCAA-TTTTCAGAACATTCCA
* * *
22591098 TGCTCTGG-AATTGTATCAATTGT
192 AGCTCAGGAAATTGCATCAATTGT
* * *
22591121 TCTAAATAGATTGTCATTTTGTAAACAACTTTTTG-TCTTTAAATTAAAAAGTTATTTATGTGAA
1 TCTAAATAGATTGTCATTTTGTAAACAAC-TTTTGATATTTAAATTAAAAACTTATTTAGGTGAA
* * * * * *
22591185 AATTGTTTCTTTCTT-GAT-TCAGGCCGAACATTCGAAGTTGACAAACTTTTACAAGTTCTTTTA
65 AATAGTTTCTCTATTGGATCTCA-GCCAAACATTCGAACTTGACAAACTTTTACAAGTTCTTTTT
* * ** *
22591248 TAACTTCGATTCCTTAAAGTATTCAAGATGATCAATTCTTTCGAGCAATTCCCTGAACATTCCAA
129 TAACTTCG-TTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCAGAACATTCCAA
* * *
22591313 GCTCAGGAAATCGCATCATTTGG
193 GCTCAGGAAATTGCATCAATTGT
* * * *
22591336 TCTAAATAG-TTGTCATTTTATAAACAACTTTTGATATTTGAATTCAAAACTTATTTAGGTGATA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGATATTTAAATTAAAAACTTATTTAGGTGAAA
* *
22591400 ATAGTTTCTCTATTGGTTCTCAGCCAAACTTTCGAACTTGACAAACTTTTACAAGTTCTTTTTTA
66 ATAGTTTCTCTATTGGATCTCAGCCAAACATTCGAACTTGACAAACTTTTACAAGTTCTTTTTTA
* *
22591465 ACTTCTGTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGCAATTTTCAGAACATTCCAAGC
131 ACTTC-GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCAGAACATTCCAAGC
*
22591530 TCGGGAAATTGCATCAATTGT
195 TCAGGAAATTGCATCAATTGT
**** * ** * * * ***
22591551 TCTAAATAGATTGTCATTTTGTAAA-AA-AAAAGTTATTTATGTT-AGAA-TTGTTT--CT-TCC
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGATATTTAAATTAAAAACTTATTTAGGTGAAA
* * * * * * * ** *
22591609 TTTG-TTCTCGA-TCGAACT--TCCAAAC-TT-G-AC-TAACTTTA-----ACGAGTTCTTTTAT
66 ATAGTTTCTCTATTGGATCTCAGCCAAACATTCGAACTTGAC-AAACTTTTACAAGTTCTTTT-T
* * * * * * * * * * * *
22591661 AAATTTTGTTCATTAATGTATTAAAGACGATCCATTCCTTCGAGCAATTTTCCA-TATAGTACAT
129 TAACTTCGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT-CAGAACATTCCAA
** ** *
22591725 GCTTGGGAAATCACATC-ATTAGG
193 GCTCAGGAAATTGCATCAATT-GT
* * * * * * *
22591748 TCTAAATAG-TTGTCATTTTATAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGATATTTAAATTAAAAACTTATTTAGGTGAAA
* * ** * * *
22591812 ATTGTTTCTCTTTTGCTTCTC-GACCAAACTTTCGAACTTGA-AAACCTTTTACGAGTTCTTTTA
66 ATAGTTTCTCTATTGGATCTCAG-CCAAACATTCGAACTTGACAAA-CTTTTACAAGTTCTTTTT
* * *
22591875 TAACTTTGATTCCTTAAATTATTCAAGACGATCCATTCCTTCGAGCAATATTTC-GAACATTCCA
129 TAACTTCG-TTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAAT-TTTCAGAACATTCCA
* * *
22591939 TGCTC-GAGAAATAGCATCATTTAG-
192 AGCTCAG-GAAATTGCATCAATT-GT
* * * *
22591963 TCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGATATTTAAATTAAAAACTTATTTAGGTGAAA
* * * * *
22592027 ATAGTTTCTCT-TCTGGTTCT-AGGACGAAC-TTCCGAAGTTGACAAACTTTTACGAGTTCTTTT
66 ATAGTTTCTCTAT-TGGATCTCA-GCCAAACATT-CGAACTTGACAAACTTTTACAAGTTCTTTT
* * * * *
22592089 ATAACTTCGGTTCCTTAAAGTATTCAAGAAT-ATTCATTTCTTCGAGCAATTTTTTA-AATATTC
128 TTAACTTC-GTTCCTTAAAGTATTCAAG-ATGATCCATTCCTTCGAGCAA-TTTTCAGAACATTC
* * * * *
22592152 CAAGGTTAGGAAATCGCATCATTTGG
190 CAAGCTCAGGAAATTGCATCAATTGT
* * * * *
22592178 TCTAAATA-ATTGTCATTTTATAAACAACTTTTGGTTTTTTAATTAAAAACTTATTTAGGTGATA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGATATTTAAATTAAAAACTTATTTAGGTGAAA
* * * * * * * * * *
22592242 ATAGTTTCTCTCTAGGTTCTCGGTCGAACTTTCGAACTTGAAAAACCTTTACTAGTTCTTTTTTA
66 ATAGTTTCTCTATTGGATCTCAGCCAAACATTCGAACTTGACAAACTTTTACAAGTTCTTTTTTA
* * * **
22592307 ACTTCGGTTCCTTAAATTATTCAAG-TCGTTCTAAAACC-TCGAGCAATTTTTCA-AACATTCCA
131 ACTTC-GTTCCTTAAAGTATTCAAGAT-GATC-CATTCCTTCGAGCAA-TTTTCAGAACATTCCA
** * *
22592369 TTC-CTGAGAAATCGCATCAATTGT
192 AGCTCAG-GAAATTGCATCAATTGT
* * * * * * *
22592393 TCTAAATAGATTGTCATTTTGTGAACAACTTTTGGTTTTTGAATTAAAAAGTTATTTATGTGAGA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGATATTTAAATTAAAAACTTATTTAGGTGAAA
* * * * * * * ** *
22592458 ATTGTTTCTCTCTAGGTTCTCGGTCGAAC-TTCCGAACTTGACAAACTTTTATGAGTTCTTTTAT
66 ATAGTTTCTCTATTGGATCTCAGCCAAACATT-CGAACTTGACAAACTTTTACAAGTTCTTTTTT
* * * * * *
22592522 AACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCC-TCTTAGCCATTTTTC-GAACAATCCG
130 AAC-TTCGTTCCTTAAAGTATTCAAGATGATCCATTCCTTC-GAG-CAATTTTCAGAACATTCCA
* * ** * *
22592585 TGCTCGGGAAATCACATCATTTGG
192 AGCTCAGGAAATTGCATCAATTGT
* * * * * * *
22592609 TCTCAATAG-TTGTCATTTTATAAACAATTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGATATTTAAATTAAAAACTTATTTAGGTGAAA
* * * * * * * *
22592673 ATAGTTCCTCTCTTGGCTCT-AGGACGAAC-TTCCGAACATGACAAACATTTACGAGTT-TTTTT
66 ATAGTTTCTCTATTGGATCTCA-GCCAAACATT-CGAACTTGACAAACTTTTACAAGTTCTTTTT
* * *
22592735 TAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGTGCAATTTTTC-GAACATTCCA
129 TAACTTC-GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTTCAGAACATTCCA
* * *
22592799 TGCTC-GAGAAATCGTATCAATTGT
192 AGCTCAG-GAAATTGCATCAATTGT
* * * * * * *
22592823 TCTAAATAGATTGTCATTTTGTAAAAAACTTTTGGTCTTTAAATTTAAAAGTTATTTATGTGAGA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGATATTTAAATTAAAAACTTATTTAGGTGAAA
* * * * * * * * * *
22592888 AT-TTTTCTTTCTTGGTTCTC-GATCGAACTTTCGAACTTGAAAAACTTTTACGAGTTCTTTTAT
66 ATAGTTTCTCTATTGGATCTCAG-CCAAACATTCGAACTTGACAAACTTTTACAAGTTCTTTTTT
* * ** * * *
22592951 AACTTTTGTTCCTTAAAGTATTCAAGAGGATCCATTCCTTTAAGCCATTTTTC-GTAA-AGTACA
130 AAC-TTCGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAG-CAATTTTCAG-AACATTCCA
* * * *
22593014 TGCT-TGAGAAATCGCATC-ATTAGA
192 AGCTCAG-GAAATTGCATCAATT-GT
* * * * * * *
22593038 CCTAAATAG-TTGACATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGA
1 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGATATTTAAATTAAAAACTTATTTAGGTGAAA
* * * * * * * *
22593102 AT--TAATCTCTCTTGGTTCTC-GACCGAACTTTCAAACTTGACAAACTTTTACGAGTTCTTTTA
66 ATAGT-TTCTCTATTGGATCTCAG-CCAAACATTCGAACTTGACAAACTTTTACAAGTTCTTTTT
22593164 TAACTTCGT
129 TAACTTCGT
22593173 CCCTAAATAG
Statistics
Matches: 1673, Mismatches: 294, Indels: 171
0.78 0.14 0.08
Matches are distributed among these distances:
196 17 0.01
197 81 0.05
198 14 0.01
199 3 0.00
200 5 0.00
201 3 0.00
202 4 0.00
203 4 0.00
204 7 0.00
205 9 0.01
207 10 0.01
208 8 0.00
209 4 0.00
210 3 0.00
211 2 0.00
212 5 0.00
213 26 0.02
214 403 0.24
215 844 0.50
216 215 0.13
217 6 0.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
TCTAAATAGATTGTCATTTTGTAAACAACTTTTGATATTTAAATTAAAAACTTATTTAGGTGAAA
ATAGTTTCTCTATTGGATCTCAGCCAAACATTCGAACTTGACAAACTTTTACAAGTTCTTTTTTA
ACTTCGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCAGAACATTCCAAGCT
CAGGAAATTGCATCAATTGT
Found at i:22591959 original size:215 final size:214
Alignment explanation
Indices: 22591577--22593169 Score: 1744
Period size: 215 Copynumber: 7.4 Consensus size: 214
22591567 TTTTGTAAAA
* * * * * *
22591577 AAAAAGTTATTTATGTTAGAATTGTTTCTTCCTTT-GTTCTCGATCGAACTTCCAAACTTGACTA
1 AAAAACTTATTTAGGTGAGAATTGTTTC-TCTTTTGGTTCTCGATCGAACTTCCGAACTTGACAA
* * * * *
22591641 ACTTTAACGAGTTCTTTTATAAATTTTGTTCATTAATGTATTAAAGACGATCCATTCCTTCGAGC
65 ACTTTTACGAGTTCTTTTAT-AACTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * * *
22591706 AA-TTTTCCATATAGTACATGCTTGGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTATA
129 AATTTTTCGA-ACATTCCATGCTCGAGAAATCGCATCATTAGGTCTAAATAGTTGTCATTTTGTA
*
22591770 AACTACTTTTGGTCTTTGAATT
193 AACAACTTTTGGTCTTTGAATT
* * * * *
22591792 AAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTCGACCAAACTTTCGAACTTGA-AAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGATCGAACTTCCGAACTTGACAAA
*
22591856 CCTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAATTATTCAAGACGATCCATTCCTTCGAGC
66 -CTTTTACGAGTTCTTTTATAACTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* *
22591921 AATATTTCGAACATTCCATGCTCGAGAAATAGCATCATTTA-GTCTAAATAGTTGTCATTTTGTA
129 AATTTTTCGAACATTCCATGCTCGAGAAATCGCATCA-TTAGGTCTAAATAGTTGTCATTTTGTA
22591985 AACAACTTTTGGTCTTTGAATT
193 AACAACTTTTGGTCTTTGAATT
* * * *
22592007 AAAAACTTATTTAGGTGAGAATAGTTTCTCTTCTGGTTCTAGGA-CGAACTTCCGAAGTTGACAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCT-CGATCGAACTTCCGAACTTGACAA
* ** * *
22592071 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAATATTCATTTCTTCGAGC
65 ACTTTTACGAGTTCTTTTATAACTT-TGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
** * * * * * * *
22592136 AATTTTTTAAATATTCCAAGGT-TAGGAAATCGCATCATTTGGTCTAAATAATTGTCATTTTATA
129 AATTTTTCGAACATTCCATGCTCGA-GAAATCGCATCATTAGGTCTAAATAGTTGTCATTTTGTA
* *
22592200 AACAACTTTTGGTTTTTTAATT
193 AACAACTTTTGGTCTTTGAATT
* * * * * * *
22592222 AAAAACTTATTTAGGTGATAATAGTTTCTCTCTAGGTTCTCGGTCGAACTTTCGAACTTGAAAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGATCGAACTTCCGAACTTGACAAA
* * * * * * * * **
22592287 CCTTTACTAGTTCTTTTTTAACTTCGGTTCCTTAAATTATTCAAGTCGTTCTAAAACC-TCGAGC
66 CTTTTACGAGTTCTTTTATAACTT-TGTTCCTTAAAGTATTCAAGACGATC-CATTCCTTCGAGC
* * *
22592351 AATTTTTCAAACATTCCATTC-CTGAGAAATCGCATCAATT-GTTCTAAATAGATTGTCATTTTG
129 AATTTTTCGAACATTCCATGCTC-GAGAAATCGCATC-ATTAGGTCTAAATAG-TTGTCATTTTG
* *
22592414 TGAACAACTTTTGGTTTTTGAATT
191 TAAACAACTTTTGGTCTTTGAATT
* * * * *
22592438 AAAAAGTTATTTATGTGAGAATTGTTTCTCTCTAGGTTCTCGGTCGAACTTCCGAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGATCGAACTTCCGAACTTGACAAA
* *
22592503 CTTTTATGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCC-TCTTAGC
66 CTTTTACGAGTTCTTTTATAAC-TTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-GAGC
* * * * * * * *
22592567 CATTTTTCGAACAATCCGTGCTCGGGAAATCACATCATTTGGTCTCAATAGTTGTCATTTTATAA
129 AATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTAGGTCTAAATAGTTGTCATTTTGTAA
*
22592632 ACAATTTTTGGTCTTTGAATT
194 ACAACTTTTGGTCTTTGAATT
* * * * * * *
22592653 AAAAACTTATTTAGGTGATAATAGTTCCTCTCTTGGCTCTAGGA-CGAACTTCCGAACATGACAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCT-CGATCGAACTTCCGAACTTGACAA
* * * * *
22592717 ACATTTACGAGTT-TTTTTTAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGTGC
65 ACTTTTACGAGTTCTTTTATAACTT-TGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* *
22592781 AATTTTTCGAACATTCCATGCTCGAGAAATCGTATCAATT-GTTCTAAATAGATTGTCATTTTGT
129 AATTTTTCGAACATTCCATGCTCGAGAAATCGCATC-ATTAGGTCTAAATAG-TTGTCATTTTGT
* *
22592845 AAAAAACTTTTGGTCTTTAAATT
192 AAACAACTTTTGGTCTTTGAATT
* * * * *
22592868 TAAAAGTTATTTATGTGAGAATT-TTTCT-TTCTTGGTTCTCGATCGAACTTTCGAACTTGAAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGATCGAACTTCCGAACTTGACAA
* **
22592931 ACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGAGGATCCATTCCTTTAAGC
65 ACTTTTACGAGTTCTTTTATAAC-TTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * ** *
22592996 CATTTTTCGTAA-AGTACATGCTTGAGAAATCGCATCATTAGACCTAAATAGTTGACATTTTGTA
129 AATTTTTCG-AACATTCCATGCTCGAGAAATCGCATCATTAGGTCTAAATAGTTGTCATTTTGTA
*
22593060 AACTACTTTTGGTCTTTGAATT
193 AACAACTTTTGGTCTTTGAATT
** * * * *
22593082 AAAAACTTATTTAGGTGAGAATT-AATCTCTCTTGGTTCTCGACCGAACTTTCAAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGATCGAACTTCCGAACTTGACAAA
22593146 CTTTTACGAGTTCTTTTATAACTT
66 CTTTTACGAGTTCTTTTATAACTT
22593170 CGTCCCTAAA
Statistics
Matches: 1159, Mismatches: 187, Indels: 66
0.82 0.13 0.05
Matches are distributed among these distances:
213 7 0.01
214 245 0.21
215 709 0.61
216 195 0.17
217 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (214 bp):
AAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGATCGAACTTCCGAACTTGACAAA
CTTTTACGAGTTCTTTTATAACTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
TTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTAGGTCTAAATAGTTGTCATTTTGTAAAC
AACTTTTGGTCTTTGAATT
Found at i:22592399 original size:430 final size:428
Alignment explanation
Indices: 22591577--22593171 Score: 1946
Period size: 430 Copynumber: 3.7 Consensus size: 428
22591567 TTTTGTAAAA
* * * *
22591577 AAAAAGTTATTTATGTTAGAATTGTTTCTTCCTT-T-GTTCTCGATCGAACTTCCAAACTTGACT
1 AAAAAGTTATTTATGTGAGAA-TGTTTC-T-CTTCTGGTTCTGGA-CGAACTTCCGAACTTGACA
* * * * *
22591640 AACTTTAACGAGTTCTTTTATAAATTTTGTTCATTAATGTATTAAAGACGATCCATTCCTTCGAG
62 AACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * *
22591705 CAATTTTCCATATAGTACATGCTTGGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTATA
127 CAATTTTTCAAATA-TCCATGCTTGGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTATA
* * * * *
22591770 AACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTCGA
191 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGA
* * *
22591835 CCAAACTTTCGAACTTG-AAAACCTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAATTATTC
256 CCGAACTTTCGAACTTGAAAAACC-TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATTC
* * *
22591899 AAGACGATCCATTCCTTCGAGCAATATTTCGAACATTCCATGCTCGAGAAATAGCATCATTTAG-
320 AAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCAATT-GT
22591963 TCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
384 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
22592007 AAAAACTTATTTAGGTGAGAATAGTTTCTCTTCTGGTTCTAGGACGAACTTCCGAAGTTGACAAA
1 AAAAAGTTATTTATGTGAGAAT-GTTTCTCTTCTGGTTCT-GGACGAACTTCCGAACTTGACAAA
** ** * *
22592072 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAATATTCATTTCTTCGAGCA
64 CTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * * *
22592137 ATTTTTTAAATATTCCAAGGTTAGGAAATCGCATCATTTGGTCTAAATAATTGTCATTTTATAAA
129 ATTTTTCAAATA-TCCATGCTTGGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTATAAA
* * * * **
22592202 CAACTTTTGGTTTTTTAATTAAAAACTTATTTAGGTGATAATAGTTTCTCTCTAGGTTCTCGGTC
193 CAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGACC
* *
22592267 GAACTTTCGAACTTGAAAAACCTTTACTAGTTCTTTTTTAACTTCGGTTCCTTAAATTATTCAAG
258 GAACTTTCGAACTTGAAAAACCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAG
* * * ** * *
22592332 TCGTTCTAAAACC-TCGAGCAATTTTTCAAACATTCCATTC-CTGAGAAATCGCATCAATTGTTC
323 ACGATC-CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTC-GAGAAATCGCATCAATTGTTC
* *
22592395 TAAATAGATTGTCATTTTGTGAACAACTTTTGGTTTTTGAATT
386 TAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
22592438 AAAAAGTTATTTATGTGAGAATTGTTTCTC-TCTAGGTTCTCGGTCGAACTTCCGAACTTGACAA
1 AAAAAGTTATTTATGTGAGAA-TGTTTCTCTTCT-GGTTCT-GGACGAACTTCCGAACTTGACAA
* *
22592502 ACTTTTATGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCC-TCTTAG
63 ACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-GAG
* * * * *
22592566 CCATTTTTCGAACA-ATCCGTGCTCGGGAAATCACATCATTTGGTCTCAATAGTTGTCATTTTAT
127 CAATTTTTC-AA-ATATCCATGCTTGGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTAT
* * * * *
22592630 AAACAATTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAGTTCCTCTCTTGGCTCTAG
190 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCT-C
* * * * * **
22592695 GA-CGAACTTCCGAACATGACAAACATTTACGAGTT-TTTTTTAACTTCGGTTCCTTAAAGCATT
254 GACCGAACTTTCGAACTTGAAAAACCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATT
* *
22592758 CAAGACGATCCATTCCTTCGTGCAATTTTTCGAACATTCCATGCTCGAGAAATCGTATCAATTGT
319 CAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCAATTGT
* *
22592823 TCTAAATAGATTGTCATTTTGTAAAAAACTTTTGGTCTTTAAATT
384 TCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * *
22592868 TAAAAGTTATTTATGTGAGAATTTTTCT-TTCTTGGTTCTCGATCGAACTTTCGAACTTGAAAAA
1 AAAAAGTTATTTATGTGAGAATGTTTCTCTTC-TGGTTCTGGA-CGAACTTCCGAACTTGACAAA
* ** *
22592932 CTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGAGGATCCATTCCTTTAAGCC
64 CTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * ** * *
22592997 ATTTTTCGTAAAGTA--CATGCTTGAGAAATCGCATCATTAGACCTAAATAGTTGACATTTTGTA
129 ATTTTTC--AAA-TATCCATGCTTGGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTATA
* *
22593060 AACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT--TAATCTCTCTTGGTTCTCG
191 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAGT-TTCTCTCTTGGTTCTCG
* * *
22593123 ACCGAACTTTCAAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCG
255 ACCGAACTTTCGAACTTGAAAAACCTTTACGAGTTCTTTTATAACTTCG
22593172 TCCCTAAATA
Statistics
Matches: 997, Mismatches: 141, Indels: 55
0.84 0.12 0.05
Matches are distributed among these distances:
427 3 0.00
428 45 0.05
429 199 0.20
430 459 0.46
431 285 0.29
432 5 0.01
433 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (428 bp):
AAAAAGTTATTTATGTGAGAATGTTTCTCTTCTGGTTCTGGACGAACTTCCGAACTTGACAAACT
TTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
TTTTCAAATATCCATGCTTGGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTATAAACAA
CTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGACCGAA
CTTTCGAACTTGAAAAACCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGACG
ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCAATTGTTCTAAAT
AGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
Found at i:22592838 original size:646 final size:645
Alignment explanation
Indices: 22591577--22597547 Score: 2522
Period size: 645 Copynumber: 9.1 Consensus size: 645
22591567 TTTTGTAAAA
* * * ** * * **
22591577 AAAAAGTTATTTATGTTAGAATTGTTTCT-TCCTTTGTTCTCGATCGAACTTCCAAACTTGACTA
1 AAAAACTTATTTAGGTGAGAA-TGTTTCTCT-CTAGGTTCTCGATCGAACTTTCGAACTTGAAAA
* ** * * * * ** *
22591641 A-CTTTAACGAGTTCTTTTATAAATTTTGTTCATTAATGTATTAAAGACGATCCATTCCTTCGAG
64 ACCTTT-ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCAAAACCTTCAAG
* * * * * * *
22591705 CAA-TTTTCCATATAGTACATGCTTGGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTAT
128 CAATTTTTCGA-AAAGTACATGCCTGAGAAATCGCATCATTAGATCTAAATAGTTGTCATTTTGT
* *
22591769 AAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTCG
192 AAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTCG
* *
22591834 ACCAAACTTTCGAACTTGA-AAACCTTTTACGAGTTCTTTTATAAC-TTTGATTCCTTAAATTAT
257 ACCGAACTTTCGAACTTGACAAA-CTTTTACGAGTTCTTTTATAACTTTTGATTCCTTAAAGTAT
*
22591897 TCAAGACGATCCATTCCTTCGAGCAATATTTCGAACATTCCATGCTCGAGAAATAGCATCATTTA
321 TCAAGACGATCCATTCCTTCGAGCAATATTTCGAACAATCCATGCTCGAGAAATAGCATCATTTA
*
22591962 GTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGA
386 GTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGA
* * ** *
22592027 ATAGTTTCTCTTCTGGTTCTAGGACGAACTTCCGAAGTTGACAAACTTTTACGAGTTCTTTTATA
451 ATAGTTCCTCTTCTGGCTCTAGGACGAACTTCCGAACATGACAAACATTTACGAGTTCTTTTATA
* * * * * * *
22592092 ACTTCGGTTCCTTAAAGTATTCAAGAATATTCATTTCTTCGAGCAATTTTTTAAATATTCCAAGG
516 ACTTCGGTTCCTTAAAGCATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCAAACATTCCAAGC
* * * * *
22592157 TTAGGAAATCGCATCATTTGGTCTAAATAATTGTCATTTTATAAACAACTTTTGGTTTTTTAATT
581 TGAGGAAATCGCATCAATTGGTCTAAATAATTGTCATTTTATAAAAAACTTTTGGTCTTTAAATT
* *
22592222 AAAAACTTATTTAGGTGATAATAGTTTCTCTCTAGGTTCTCGGTCGAACTTTCGAACTTGAAAAA
1 AAAAACTTATTTAGGTGAGAAT-GTTTCTCTCTAGGTTCTCGATCGAACTTTCGAACTTGAAAAA
* * * * * *
22592287 CCTTTACTAGTTCTTTTTTAACTTCGGTTCCTTAAATTATTCAAGTCGTTCTAAAACC-TCGAGC
65 CCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC-AAAACCTTCAAGC
* * * *
22592351 AATTTTTC-AAACATTCCATTCCTGAGAAATCGCATCAATT-GTTCTAAATAGATTGTCATTTTG
129 AATTTTTCGAAA-AGTACATGCCTGAGAAATCGCATC-ATTAGATCTAAATAG-TTGTCATTTTG
* * * * * *
22592414 TGAACAACTTTTGGTTTTTGAATTAAAAAGTTATTTATGTGAGAATTGTTTCTCTCTAGGTTCTC
191 TAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTC
** * *
22592479 GGTCGAACTTCCGAACTTGACAAACTTTTATGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTAT
256 GACCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGATTCCTTAAAGTAT
* * * * *
22592543 TCAAGACGATCCATTCC-TCTTAGCCATTTTTCGAACAATCCGTGCTCGGGAAATCA-CATCATT
321 TCAAGACGATCCATTCCTTC-GAGCAATATTTCGAACAATCCATGCTCGAGAAAT-AGCATCATT
* * *
22592606 TGGTCTCAATAGTTGTCATTTTATAAACAATTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA
384 TAGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA
*
22592671 TAATAGTTCCTC-TCTTGGCTCTAGGACGAACTTCCGAACATGACAAACATTTACGAGTT-TTTT
449 GAATAGTTCCTCTTC-TGGCTCTAGGACGAACTTCCGAACATGACAAACATTTACGAGTTCTTTT
* * * *
22592734 TTAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGTGCAATTTTTCGAACATTCCA
513 ATAACTTCGGTTCCTTAAAGCATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCAAACATTCCA
* * * *
22592799 TGCTCGA-GAAATCGTATCAATTGTTCTAAATAGATTGTCATTTTGTAAAAAACTTTTGGTCTTT
578 AGCT-GAGGAAATCGCATCAATTGGTCTAAATA-ATTGTCATTTTATAAAAAACTTTTGGTCTTT
22592863 AAATT
641 AAATT
* * * * * *
22592868 TAAAAGTTATTTATGTGAGAATTTTTCTTTCTTGGTTCTCGATCGAACTTTCGAACTTGAAAAAC
1 AAAAACTTATTTAGGTGAGAATGTTTCTCTCTAGGTTCTCGATCGAACTTTCGAACTTGAAAAAC
* ** * * ** * *
22592933 TTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGAGGATCCATTCCTTTAAGCCA
66 CTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCAAAACCTTCAAGCAA
* * * *
22592998 TTTTTCGTAAAGTACATGCTTGAGAAATCGCATCATTAGACCTAAATAGTTGACATTTTGTAAAC
131 TTTTTCGAAAAGTACATGCCTGAGAAATCGCATCATTAGATCTAAATAGTTGTCATTTTGTAAAC
* **
22593063 TACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATT-AATCTCTCTTGGTTCTCGACCG
196 TACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGACCG
* * * *
22593127 AACTTTCAAACTTGACAAACTTTTACGAGTTCTTTTATAAC-TTCG-TCCCTAAATAG-ATTGTC
261 AACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGATTCCTTAA-AGTA-T-TC
**** ** * * * *** ** ** *
22593189 ACTTTGTAAACA-ACTTTTG-GTCTTTAA-ATTAAAAAGTTATTTATG-T-GAG-AATTGTTTCT
323 AAGACG-ATCCATTCCTTCGAG-C---AATATTTCGAA-CAATCCATGCTCGAGAAATAG---C-
* * * * * ** * *
22593248 TTCTTGGTTCACGGCCGAACATTCGAAGTTGACAAACTTTTACGAGTTCTTTTATAAC-TTCGGT
378 ATCAT--TT-A--GTCTAA-A-T---AGTTGTC--A-TTTT---A-----TAAACAACTTTTGG-
* * * * **
22593312 TCCTTAAAGTATTCAAGATAATCCATTCTTTA---GAGCAAT--TTTCTAAACATTCCAAGCTC-
421 T-CTT--TGAATT-AA-A-AA--C-TTATTTAGGTGAG-AATAGTTCCT---C-TT-CTGGCTCT
* * * * * * *
22593371 AGGA--AA--TCC-ATCATTTGGTCTAAATAGTTGT-C-A-TT-TTATAAACAACTTTTGATCTT
471 AGGACGAACTTCCGAACA--T-GAC-AAACA-TT-TACGAGTTCTT-T-TATAAC-TTCG---GT
** * * ** ** * * * *
22593427 TGAATTAAAAACTTATT-TAGGTGATAATAGTTTCTCTCTAG--GTTCTTAGCCAAAC-TTCCGA
524 T-CCTT-AAAGC--ATTCAAGAAGAT-CCA-TTCCT-TCGAGCAATT-TT--TCAAACATTCC-A
* ** *** * *
22593488 A-CTTGA--AAAAC-C-TTTA-TGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTAAAGACAA
578 AGC-TGAGGAAATCGCATCAATTG-G-TC-TAAATAA-TT--G-TCATT---TTA-TAAA-A-AA
* ** *
22593547 -TCTAT-ACCTTCGAGCAATTTT
629 CT-TTTGGTCTT-TA--AA--TT
*** * *** * * *
22593568 TCGAACATTCCATTTTCAGGAAATCGCATCAAT-TGTTCTAAATAGATTGTC-ATTTTGTAAAAA
1 AAAAAC-TT--A-TTT-AGG---T-G-A-GAATGT-TTCTCTCTAGGTTCTCGA--TCG-----A
* * *** * ** ** ** * *
22593631 AATATATGGTTTTTGAATTAAAAACTTTTATATATGTAAGAATTGTT-TCTCTCTAGGTTCTCGG
47 ACT-T-TCGAACTTG----AAAAACCTTTA-CGA-GT---TCTT-TTATAACT-TCGGTTC-C-T
* * * * *** * * * * * ** * * *
22593695 CAGAACTTTTGAACTTGA-C-AAACTTTTACG-AGTTCTTT-TATAACTTTGC-TTCCTTA-AAG
97 TA-AAGTATTCAAGACGATCAAAACCTTCAAGCAATT-TTTCGA-AA-AGTACATGCCTGAGAA-
*
22593754 TATTCAAGACGATCCATTCCGACGAGCCATTTTCCGAACAATCCATGCTCGGGAAATCGCATCAT
157 -A-TC--G-C-AT-CATT------AG--A---T-C-TA-AAT--A-G-T-------T-G--TCA-
* * *
22593819 TTGGTCTAAATAGTTGTCATTTTAGAAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTG
186 ------T---T--TTG------T--AAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * * * * *
22593884 ATAATAGTTTCTCTCTAGGTTCTCGGCCAAACTTCCAAACTTGAAAAACCTTTACGAGTTCTTTT
232 AGAATTGTTTCTCTCTTGGTTCTCGACCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTT
* * * * * * * * *
22593949 TTAAC-TTCGGTTCCTTAAAGTATT-AGAGATGATCTATACCTTCGAGCAATTTTTCAAACATTC
297 ATAACTTTTGATTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATATTTCGAACAATC
* * * * * *
22594012 CATTCTC-AGGAAATCGCATCAATTATTTTAAATA---G--A--TTGT---C-A-TTTT-G---T
361 CATGCTCGA-GAAATAGCATCATTTAGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTT
* * * * * * * * * * * *
22594060 T-AA-AAAAAAGTTATTTATGTTAGAATTGTTTCT-TTCTTTGTTCTCGGTCGAACTTCCAAACT
425 TGAATTAAAAACTTATTTAGGTGAGAATAGTTCCTCTTC-TGGCTCTAGGACGAACTTCCGAACA
** * * * * *
22594122 TGACAAAC-TTTAACGAGTTCTTTTATAACTTTTGTTCATT--TGTATTAAAGACGATCCATTCC
489 TGACAAACATTT-ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGCATTCAAGAAGATCCATTCC
* * * * * * *
22594184 TTCGAGCAATTTTCCATACAGTCCATGCTTG-GGAAATCACATC-ATTAGGTCTAAATAGTTTTC
553 TTCGAGCAATTTTTCAAACATTCCAAGC-TGAGGAAATCGCATCAATT-GGTCTAAATAATTGTC
* ** *
22594247 ATTTTGTAAACTAC-TTTGGTCTTTTAATT
616 ATTTTATAAAAAACTTTTGGTCTTTAAATT
* * * *** *
22594276 CAAAATTTATTTAGGTGAGAATTGTTTCTCTTTTCCTTCTCG-GCTGAAC-TTCTGAACTTGAAA
1 AAAAACTTATTTAGGTGAGAA-TGTTTCTCTCTAGGTTCTCGATC-GAACTTTC-GAACTTGAAA
* * * ** * * * ** *
22594339 AACTTTTACGAGTTCTTTTGTAACTACAATGCCTTAAATTATTCAAGACGATCCATTCCTTCGAG
63 AACCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCAAAACCTTCAAG
* * * * *
22594404 CAA-TATTCCAAACATTCCATG-CTCAAGAAATCGCATCATTTA-ATCTAAATAGTTGTCATTTT
128 CAATTTTTCGAAA-AGTACATGCCT-GAGAAATCGCATCA-TTAGATCTAAATAGTTGTCATTTT
* * * * *
22594466 GTAAACAAATTTTGGTCTTTGAATT-AAAATTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCT
190 GTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* ** * * * ** *
22594530 AGGTCGAACTTCCGAAGTTGACAAACTTTTACAAGTTCTTTTATAACTTCAG-TTCCTTAATGTA
255 CGACCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGATTCCTTAAAGTA
** * * * * * *
22594594 TTCAAGAATATCCATTCCTTCGAGCTAT-TTTCTAAACATTCCAAGCT-TAGAAAATCGCATCAT
320 TTCAAGACGATCCATTCCTTCGAGCAATATTTC-GAACAATCCATGCTCGAG-AAATAGCATCAT
* *
22594657 TTTGTCTAAATAGTTGTCATTTTATAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTG
383 TTAGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTG
* * * ** * * * * *
22594722 ATAATAGTTTCTC-TCTAGGTTCTCTGCCGAACTTCCTAACTTGAAAAACCTTTACGAGTTCTTT
448 AGAATAGTTCCTCTTCT-GGCTCTAGGACGAACTTCCGAACATGACAAACATTTACGAGTTCTTT
* ** * * * ** * *
22594786 TTTAACTTCGGTTCCTTAAATTATTAAAGACGATCTAAACCCTCGAGTAATTTTTCAAACATTCC
512 TATAACTTCGGTTCCTTAAAGCATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCAAACATTCC
** * * * * * *
22594851 ATTCTCG-GGAAATTGCATCAATTGTTCTAAATAGATTGTCATTTTGTTAACAACTTTTGGTTTT
577 AAGCT-GAGGAAATCGCATCAATTGGTCTAAATA-ATTGTCATTTTATAAAAAACTTTTGGTCTT
*
22594915 TGAATT
640 TAAATT
* * * *
22594921 AAAAAGTTATTTATGTGAGAATTGTTTCTCTCTAGGTTCTCGGTCGAAC-TTCTGAACTTGACAA
1 AAAAACTTATTTAGGTGAGAA-TGTTTCTCTCTAGGTTCTCGATCGAACTTTC-GAACTTGAAAA
* * ** * * **
22594985 ACTTTTATGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTAAAGACGATCCATTCC-TCTAAG
64 ACCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCAAAACCTTC-AAG
* * * * * * * *
22595049 CCATTTTCCGAACAA-TCCATG-CTCGGGAAATCGAATCATTTGGTCTAAATAGTTGTCATTTTA
128 CAATTTTTCGAA-AAGTACATGCCT-GAGAAATCGCATCATTAGATCTAAATAGTTGTCATTTTG
* * * * * *
22595112 TAAACAACATTTGGTCCTTGAATTAAAAACTTATTTA-GATGATAATAGTTCCTCTCTTGGTTCT
191 TAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACG-TGAGAATTGTTTCTCTCTTGGTTCT
* * * * * * * *
22595176 AGGA-CGAACTTCCGAACATGACAAACATTTACAAGTT-TTTTTTAAC-TTCGGTTCCTTAAAGT
255 -CGACCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGATTCCTTAAAGT
* * * * * * * *
22595238 ATTCAAGAAGATCCATTCCTTC-ATGCAAT-TTTTGAACATTCCATGCTCCAGAATTCGTATCAA
319 ATTCAAGACGATCCATTCCTTCGA-GCAATATTTCGAACAATCCATGCTCGAGAAATAGCATCAT
* * * *
22595301 TT-GTTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTTATG
383 TTAG-TCTAAATAG-TTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGG
** * * * * * * * *
22595365 TGAGAATTTTTTCT-TTCTTGGTTCT-CGATCGAACTTCCAAACTTGACAAACTTTTACAAATTC
446 TGAGAATAGTTCCTCTTC-TGGCTCTAGGA-CGAACTTCCGAACATGACAAACATTTACGAGTTC
*** * * ** * * *
22595428 TTTTATAACTTTTTTTCCTTAAAGTATTCAAGAGGATCCATTCCTTCGAGCCGTTTTCCATACAG
509 TTTTATAACTTCGGTTCCTTAAAGCATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCAAACAT
* * * * * * **
22595493 TCCATGCTTG-GGAAATCACATC-ATTAGATCTAAATAGTTGACATTTTGTAAACTACTTTTGGT
574 TCCAAGC-TGAGGAAATCGCATCAATT-GGTCTAAATAATTGTCATTTTATAAAAAACTTTTGGT
*
22595556 CTTTGAATT
637 CTTTAAATT
* * * * * * *
22595565 AAATACTTATTTAGGTGAGAATTTTATCTCTCTTGGTTCTTGACCGAACTTTCAAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATGTT-TCTCTCTAGGTTCTCGATCGAACTTTCGAACTTGAAAAA
* * * * * *** *
22595630 CTTTTACAAGTTCTTATATAACTTTGGTTCCTTAAAGTATTAAAGACGATCCATTCCCTT-GAGC
65 CCTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT-CAAAACCTTCAAGC
* * * * * * * *
22595694 AATTTTTCTAACATTTCATG-CTCGAAAAATCGCATCTTTTGGTCTAAATAGTTGTCATTTTGTA
129 AATTTTTCGAAAAGTACATGCCT-GAGAAATCGCATCATTAGATCTAAATAGTTGTCATTTTGTA
* * ** * * * *
22595758 AACAACTTTTGGTCTTCGAATTAAAAACTTATTTTGGTGAGAATAGTTTCTCTCTTTGTTCACGG
193 AACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGA
* * * * * * *
22595823 CCGAACTTTTGAAGTTGACAAACTTTTACAAGTTTTTTTATAAC-TTCGGTTCCTTAAACTATTC
258 CCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGATTCCTTAAAGTATTC
* * * * *
22595887 AAGATGATCCATTCTTTCGAGCAAT-TTCTTGAACATTCCAAGCTC-AGGAAATCA-CATCATTT
323 AAGACGATCCATTCCTTCGAGCAATATT-TCGAACAATCCATGCTCGA-GAAAT-AGCATCATTT
* * *
22595949 GGTCTAAATAGTTGTCATTTTATAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAT
385 AGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAG
* * * * * * * **
22596014 AATAGTTTCTCTAT-TGGTTATCA-GCCGAACTTCTGAGCTTGACAAATTTTTACGAGTTCTTTT
450 AATAGTTCCTCT-TCTGGCTCT-AGGACGAACTTCCGAACATGACAAACATTTACGAGTTCTTTT
* * * * * *
22596077 TTAACTTCTGTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCA
513 ATAACTTCGGTTCCTTAAAGCATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCAAACATTCCA
* ** *
22596142 TGCTCGA-GAAATCGCATCAATTATTCTAAATAGATTGTCATTTTGTAAAAAA------G---TT
578 AGCT-GAGGAAATCGCATCAATTGGTCTAAATA-ATTGTCATTTTATAAAAAACTTTTGGTCTTT
22596197 --A-T
641 AAATT
* * ** * * * *
22596199 ------TTATGTTA---GA-ATTGTTTCTTTCTTTGTTCTTGGTCAAACTTTCGAACTTGACAAA
1 AAAAACTTAT-TTAGGTGAGAATGTTTCTCTCTAGGTTCTCGATCGAACTTTCGAACTTGAAAAA
* *** * * * * ** *
22596254 -CTTCAACGAGTTCTTTTATAACTTTTCTTCATTAAATTATTAAAGACGATCTATTCCTTCTAGC
65 CCTT-TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCAAAACCTTCAAGC
* * * * * * * *
22596318 AA-TTTTCCATACAGTCCATGCTTG-GCAAATCACATCATTTGGTCTATATAGTTGTCATTTTGT
129 AATTTTTCGA-AAAGTACATGCCTGAG-AAATCGCATCATTAGATCTAAATAGTTGTCATTTTGT
* * * *
22596381 GAACTACTTTTGGTATTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTC-CT
192 AAACTACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTC-
* * * * * * *
22596445 GGCCGCACTTCCGAACTTGAAAAACTATTACGAGTTCTTTTATAAC-TTTGACTCCTTAAACTAT
256 GACCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGATTCCTTAAAGTAT
* * * * * * *
22596509 TTAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCAAGCT-TAGGAAATTGCATCATTT
321 TCAAGACGATCCATTCCTTCGAGCAATATTTCGAACAATCCATGCTCGA-GAAATAGCATCATTT
* * *
22596573 GGTCTAAATAGTTGTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAT
385 AGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAG
* * * * * * * * *
22596638 AATAGTTTCTC-TCTAAGTTCTCGGTCGAACTTCCGAACTTGAAAAACCTTTACGAGTTCTTTTT
450 AATAGTTCCTCTTCT-GGCTCTAGGACGAACTTCCGAACATGACAAACATTTACGAGTTCTTTTA
** * * * * * *
22596702 TAACTTCGGTTCCTTAAATTATTCAAGATGATCTATACCTTTGAGCAATTTCTCGAACATTCCAT
514 TAACTTCGGTTCCTTAAAGCATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCAAACATTCCA-
* * * * * *
22596767 TATC-G-GGAAATCGCATCAATTGTTCTAAATAGATTGTCACTTTGTAAACAACTTTTGGTTTTT
578 -AGCTGAGGAAATCGCATCAATTGGTCTAAATA-ATTGTCATTTTATAAAAAACTTTTGGTCTTT
*
22596830 GAATT
641 AAATT
* * * *
22596835 AAAAAGTTATTTATGTGAGAATTATTTTTCTCTAGGTTCTCGATCGAACTTTCGAACTTGAAAAA
1 AAAAACTTATTTAGGTGAGAA-TGTTTCTCTCTAGGTTCTCGATCGAACTTTCGAACTTGAAAAA
* * * ** ** * ** *
22596900 CTTTTTCGAATTCTTTTATAACTT-TTTTACCTTAAAGTATTCAAGATAATCCATTCCTTCGAGC
65 CCTTTACGAGTTCTTTTATAACTTCGGTT-CCTTAAAGTATTCAAGACGATCAAAACCTTCAAGC
* * * * * * *
22596964 CA-TTTTC--CAA-TGC-T--C-GGGAAATCGCATCATTTGGTCTAAAATAGTTGTCATTTTATA
129 AATTTTTCGAAAAGTACATGCCTGAGAAATCGCATCATTAGATCT-AAATAGTTGTCATTTTGTA
* * * * * * * * *
22597021 AACAACTTTTGGTTTTTGAATTAAAAACTTCTATA-GATGATAATAGATCCTCTCTTGGTTCTAG
193 AACTACTTTTGGTCTTTGAATTAAAAACTTATTTACG-TGAGAATTGTTTCTCTCTTGGTTCTCG
* * * * * *
22597085 GCTGAACTTTCGAACTTGACAAACATTTACGAGTTCTTTTTTAAC-TTCGGTTCCTTAAAGTATT
257 ACCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGATTCCTTAAAGTATT
* * * * * *
22597149 CAAGACGATCCATTCCTTC-ATACAAT-TTTCTGAACATTCCATGCTCGGGAAATCGTATCAATT
322 CAAGACGATCCATTCCTTCGA-GCAATATTTC-GAACAATCCATGCTCGAGAAATAGCATCATTT
* * * * ** *
22597212 -GTTCTAAATAGATTTTTATTTTGT--A-AACTTTTGGTCTTTAAATTAAAAGGTTATTTATGTG
385 AG-TCTAAATAG-TTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTG
* * * * ** * * *
22597273 AGAATTGTTTCT-TTCTTGGTTC-ACGGCCGAACATTCATAA-TTGACAAACTTTTACAAGTTCT
448 AGAATAGTTCCTCTTC-TGGCTCTA-GGACGAAC-TTCCGAACATGACAAACATTTACGAGTTCT
* * * * ** *
22597335 TTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAA-TTCCCTGAACAT
510 TTTATAACTTCGGTTCCTTAAAGCATTCAAGAAGATCCATTCCTTCGAGCAATTTTTC-AAACAT
* * * * * *
22597399 TCCAAGCTCAGGAAATTGCATCATTTGGTCTAAATAGTTGTCATTATATAAACAAA-TTTTGATC
574 TCCAAGCTGAGGAAATCGCATCAATTGGTCTAAATAATTGTCATTTTATAAA-AAACTTTTGGTC
*
22597463 TTTGAATT
638 TTTAAATT
* ** *
22597471 AAAAACTTATTTAGGTGATAATAGTTTCTCTCTAGGTTCTCGGCCAAACTTTCGAACTTGAAAAA
1 AAAAACTTATTTAGGTGAGAAT-GTTTCTCTCTAGGTTCTCGATCGAACTTTCGAACTTGAAAAA
22597536 CCTTTACGAGTT
65 CCTTTACGAGTT
22597548 TATGAAGCTT
Statistics
Matches: 4095, Mismatches: 837, Indels: 797
0.71 0.15 0.14
Matches are distributed among these distances:
622 6 0.00
623 155 0.04
624 515 0.13
625 7 0.00
626 5 0.00
628 5 0.00
629 3 0.00
630 4 0.00
632 3 0.00
633 3 0.00
634 3 0.00
635 9 0.00
636 96 0.02
637 157 0.04
638 33 0.01
639 178 0.04
640 13 0.00
641 81 0.02
642 20 0.00
643 125 0.03
644 397 0.10
645 962 0.23
646 569 0.14
647 21 0.01
648 3 0.00
650 2 0.00
653 3 0.00
654 2 0.00
655 2 0.00
656 1 0.00
658 9 0.00
659 1 0.00
660 2 0.00
661 5 0.00
664 2 0.00
667 1 0.00
668 4 0.00
669 5 0.00
670 3 0.00
672 6 0.00
673 9 0.00
674 9 0.00
675 6 0.00
676 11 0.00
677 19 0.00
678 29 0.01
679 19 0.00
680 8 0.00
681 5 0.00
682 2 0.00
683 2 0.00
684 8 0.00
685 8 0.00
686 20 0.00
687 15 0.00
688 10 0.00
689 8 0.00
690 9 0.00
692 2 0.00
693 1 0.00
694 4 0.00
695 5 0.00
696 5 0.00
697 3 0.00
698 13 0.00
699 2 0.00
700 6 0.00
701 2 0.00
703 4 0.00
704 6 0.00
705 3 0.00
707 2 0.00
708 5 0.00
709 1 0.00
710 5 0.00
711 13 0.00
712 4 0.00
713 4 0.00
715 4 0.00
716 1 0.00
717 3 0.00
718 1 0.00
719 9 0.00
721 6 0.00
722 13 0.00
723 24 0.01
724 11 0.00
725 10 0.00
726 1 0.00
728 5 0.00
729 14 0.00
730 19 0.00
731 7 0.00
732 18 0.00
733 12 0.00
734 9 0.00
735 11 0.00
736 9 0.00
737 13 0.00
738 4 0.00
740 1 0.00
743 3 0.00
745 1 0.00
748 1 0.00
749 4 0.00
750 1 0.00
751 3 0.00
753 2 0.00
754 1 0.00
755 1 0.00
761 2 0.00
762 1 0.00
763 1 0.00
764 1 0.00
765 2 0.00
768 1 0.00
771 1 0.00
772 1 0.00
774 1 0.00
775 2 0.00
776 2 0.00
777 3 0.00
778 1 0.00
779 2 0.00
781 2 0.00
782 6 0.00
783 8 0.00
784 4 0.00
785 55 0.01
786 62 0.02
787 7 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (645 bp):
AAAAACTTATTTAGGTGAGAATGTTTCTCTCTAGGTTCTCGATCGAACTTTCGAACTTGAAAAAC
CTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCAAAACCTTCAAGCAA
TTTTTCGAAAAGTACATGCCTGAGAAATCGCATCATTAGATCTAAATAGTTGTCATTTTGTAAAC
TACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGACCG
AACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGATTCCTTAAAGTATTCAAG
ACGATCCATTCCTTCGAGCAATATTTCGAACAATCCATGCTCGAGAAATAGCATCATTTAGTCTA
AATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAGT
TCCTCTTCTGGCTCTAGGACGAACTTCCGAACATGACAAACATTTACGAGTTCTTTTATAACTTC
GGTTCCTTAAAGCATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCAAACATTCCAAGCTGAGG
AAATCGCATCAATTGGTCTAAATAATTGTCATTTTATAAAAAACTTTTGGTCTTTAAATT
Found at i:22593307 original size:138 final size:136
Alignment explanation
Indices: 22593038--22593309 Score: 400
Period size: 138 Copynumber: 2.0 Consensus size: 136
22593028 CATCATTAGA
* * *
22593038 CCTAAATAGTTGACATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAA
1 CCTAAATAGTTGACACTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTAGGTGAGAA
* *
22593103 TTAATCTCTCTTGGTTCTCGACCGAACTTTCAAACTTGACAAACTTTTACGAGTTCTTTTATAAC
66 TTAATCTCTCTTGGTTCACGACCGAACATTCAAACTTGACAAACTTTTACGAGTTCTTTTATAAC
22593168 TTCGTC
131 TTCGTC
* * *
22593174 CCTAAATAGATTGTCACTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTTATGTGAGA
1 CCTAAATAG-TTGACACTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTAGGTGAGA
** * * * *
22593239 ATTGTTTCTTTCTTGGTTCACGGCCGAACATTCGAAGTTGACAAACTTTTACGAGTTCTTTTATA
65 ATT-AATCTCTCTTGGTTCACGACCGAACATTCAAACTTGACAAACTTTTACGAGTTCTTTTATA
22593304 ACTTCG
129 ACTTCG
22593310 GTTCCTTAAA
Statistics
Matches: 120, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
136 9 0.08
137 52 0.43
138 59 0.49
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (136 bp):
CCTAAATAGTTGACACTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTAGGTGAGAA
TTAATCTCTCTTGGTTCACGACCGAACATTCAAACTTGACAAACTTTTACGAGTTCTTTTATAAC
TTCGTC
Found at i:22593965 original size:215 final size:215
Alignment explanation
Indices: 22593175--22596190 Score: 3045
Period size: 215 Copynumber: 14.1 Consensus size: 215
22593165 AACTTCGTCC
* * * *
22593175 CTAAATAGATTGTCACTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTTATGTGAGAA
1 CTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAA
* * * *
22593240 TTGTTTCTTTCTTGGTTCACGGCCGAACATT-CGAAGTTGACAAACTTTTACGAGTTCTTTTATA
65 TAGTTTCTCTCTTGGTTCTCGGCCGAAC-TTCCGAACTTGACAAACTTTTACGAGTTCTTTTATA
** * * ** *
22593304 ACTTCGGTTCCTTAAAGTATTCAAGATAATCCATTCTTTAGAGCAATTTTCTAAACATTCCAAGC
129 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGC
*
22593369 TCAGGAAATC-CATCATTTGGT
194 TCGGGAAATCGCATCATTTGGT
* * *
22593390 CTAAATAGTTGTCATTTTATAAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTGATAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
* ** * * * * *
22593455 AGTTTCTCTCTAGGTTCTTAGCCAAACTTCCGAACTTGAAAAACCTTTATGAGTTCTTTTTTAAC
66 AGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
* * * * * **
22593520 TTCGGTTCCTTAAAGTATTAAAGACAATCTATACCTTCGAGCAATTTTTCGAACATTCCATTTTC
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
* * *
22593585 AGGAAATCGCATCAATTGTT
196 GGGAAATCGCATCATTTGGT
* * * * * * *
22593605 CTAAATAGATTGTCATTTTGTAAAAAAATATATGGTTTTTGAATTAAAAACTTTTATATATGTAA
1 CTAAATAG-TTGTCATTTTGTAAACAACT-TTTGGTCTTTGAATTAAAAAC--TTATTTAGGTGA
* * * **
22593670 GAATTGTTTCTCTCTAGGTTCTCGGCAGAACTTTTGAACTTGACAAACTTTTACGAGTTCTTTTA
62 GAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTA
* * ** * *
22593735 TAACTTTGCTTCCTTAAAGTATTCAAGACGATCCATTCCGACGAGCCATTTTCCGAACAATCCAT
127 TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCAT
22593800 GCTCGGGAAATCGCATCATTTGGT
192 GCTCGGGAAATCGCATCATTTGGT
* *
22593824 CTAAATAGTTGTCATTTTAG-AAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTGATAA
1 CTAAATAGTTGTCATTTT-GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAA
* * * * * *
22593888 TAGTTTCTCTCTAGGTTCTCGGCCAAACTTCCAAACTTGAAAAACCTTTACGAGTTCTTTTTTAA
65 TAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAA
* * * * * *
22593953 CTTCGGTTCCTTAAAGTATT-AGAGATGATCTATACCTTCGAGCAATTTTTCAAACATTCCATTC
130 CTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGC
* * **
22594017 TCAGGAAATCGCATCAATTATT
194 TCGGGAAATCGCATCATTTGGT
* * *** * * * *
22594039 TTAAATAGATTGTCATTTTGTTAAAAAAAAGTT-AT-TTATG--TT-AGAA-TTGTTT--CT---
1 CTAAATAG-TTGTCATTTTG-TAAACAACTTTTGGTCTT-TGAATTAAAAACTTATTTAGGTGAG
** * * * ** * * * *
22594093 --TTCTTTGT-TCTCGG-TCGAACTTCCAAACTTGACAAACTT----TA-----ACGAGTTCTTT
63 AATAGTTTCTCTCTTGGTTC--TCGGCCGAACTT-CCGAACTTGACAAACTTTTACGAGTTCTTT
** * * * *
22594145 TATAACTTTTGTTCATT--TGTATTAAAGACGATCCATTCCTTCGAGCAATTTTCC-ATACAGTC
125 TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGA-ACATTC
* * *
22594207 CATGCTTGGGAAATCACATCATTAGGT
189 CATGCTCGGGAAATCGCATCATTTGGT
* * * * *
22594234 CTAAATAGTTTTCATTTTGTAAACTAC-TTTGGTCTTTTAATTCAAAATTTATTTAGGTGAGAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
* * ** * * * *
22594298 TGTTTCTCTTTTCCTTCTCGGCTGAACTTCTGAACTTGAAAAACTTTTACGAGTTCTTTTGTAAC
66 AGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
* ** * * * *
22594363 TACAATGCCTTAAATTATTCAAGACGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTC
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
** **
22594428 AAGAAATCGCATCATTTAAT
196 GGGAAATCGCATCATTTGGT
* *
22594448 CTAAATAGTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATT-AAAATTTATTTAGGTGAGAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
* * * *
22594512 AGTTTCTCTCTTGGTTCTAGGTCGAACTTCCGAAGTTGACAAACTTTTACAAGTTCTTTTATAAC
66 AGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
* * ** * ** * *
22594577 TTCAGTTCCTTAATGTATTCAAGAATATCCATTCCTTCGAGCTATTTTCTAAACATTCCAAGCTT
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
* * *
22594642 AGAAAATCGCATCATTTTGT
196 GGGAAATCGCATCATTTGGT
* * *
22594662 CTAAATAGTTGTCATTTTATAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTGATAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
* * * * * *
22594727 AGTTTCTCTCTAGGTTCTCTGCCGAACTTCCTAACTTGAAAAACCTTTACGAGTTCTTTTTTAAC
66 AGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
* * * ** * * * * *
22594792 TTCGGTTCCTTAAATTATTAAAGACGATCTAAACCCTCGAGTAATTTTTCAAACATTCCATTCTC
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
* * *
22594857 GGGAAATTGCATCAATTGTT
196 GGGAAATCGCATCATTTGGT
* * * *
22594877 CTAAATAGATTGTCATTTTGTTAACAACTTTTGGTTTTTGAATTAAAAAGTTATTTATGTGAGAA
1 CTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAA
* * * * *
22594942 TTGTTTCTCTCTAGGTTCTCGGTCGAACTTCTGAACTTGACAAACTTTTATGAGTTCTTTTATAA
65 TAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAA
** * * * *
22595007 CTTTTGTTCCTTAAAGTATTAAAGACGATCCATTCC-TCTAAGCCATTTTCCGAACAATCCATGC
130 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-GAGCAATTTTCCGAACATTCCATGC
*
22595071 TCGGGAAATCGAATCATTTGGT
194 TCGGGAAATCGCATCATTTGGT
* * * * *
22595093 CTAAATAGTTGTCATTTTATAAACAACATTTGGTCCTTGAATTAAAAACTTATTTAGATGATAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
* * * * * * *
22595158 AGTTCCTCTCTTGGTTCTAGGACGAACTTCCGAACATGACAAACATTTACAAGTT-TTTTTTAAC
66 AGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
* *
22595222 TTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTC-ATGCAATTTT-TGAACATTCCATGCT
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTCCGAACATTCCATGCT
** * * * *
22595285 CCAGAATTCGTATCAATTGTT
195 CGGGAAATCGCATCATTTGGT
* * *
22595306 CTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTTATGTGAGAA
1 CTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAA
** * ** * * *
22595371 TTTTTTCTTTCTTGGTTCTCGATCGAACTTCCAAACTTGACAAACTTTTACAAATTCTTTTATAA
65 TAGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAA
*** * ** *
22595436 CTTTTTTTCCTTAAAGTATTCAAGAGGATCCATTCCTTCGAGCCGTTTTCC-ATACAGTCCATGC
130 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGA-ACATTCCATGC
* * * *
22595500 TTGGGAAATCACATCATTAGAT
194 TCGGGAAATCGCATCATTTGGT
* * *
22595522 CTAAATAGTTGACATTTTGTAAACTACTTTTGGTCTTTGAATTAAATACTTATTTAGGTGAGAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
* * * * * * *
22595587 -TTTATCTCTCTTGGTTCTTGACCGAACTTTCAAACTTGACAAACTTTTACAAGTTCTTATATAA
66 AGTT-TCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAA
* * * * *
22595651 CTTTGGTTCCTTAAAGTATTAAAGACGATCCATTCCCTT-GAGCAATTTTTCTAACATTTCATGC
130 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATT-CCTTCGAGCAATTTTCCGAACATTCCATGC
** *
22595715 TCGAAAAATCGCATCTTTTGGT
194 TCGGGAAATCGCATCATTTGGT
* *
22595737 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTTATTTTGGTGAGAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
* * ** * * *
22595802 AGTTTCTCTCTTTGTTCACGGCCGAACTTTTGAAGTTGACAAACTTTTACAAGTTTTTTTATAAC
66 AGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
* * * * *
22595867 TTCGGTTCCTTAAACTATTCAAGATGATCCATTCTTTCGAGCAA-TTTCTTGAACATTCCAAGCT
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-CGAACATTCCATGCT
* *
22595931 CAGGAAATCACATCATTTGGT
195 CGGGAAATCGCATCATTTGGT
* * *
22595952 CTAAATAGTTGTCATTTTATAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
* * * * * * *
22596017 AGTTTCTCTATTGGTTATCAGCCGAACTTCTGAGCTTGACAAATTTTTACGAGTTCTTTTTTAAC
66 AGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
* * * *
22596082 TTCTGTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCTC
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
* * **
22596147 GAGAAATCGCATCAATTATT
196 GGGAAATCGCATCATTTGGT
22596167 CTAAATAGATTGTCATTTTGTAAA
1 CTAAATAG-TTGTCATTTTGTAAA
22596191 AAAGTTATTT
Statistics
Matches: 2290, Mismatches: 448, Indels: 125
0.80 0.16 0.04
Matches are distributed among these distances:
192 2 0.00
193 7 0.00
194 13 0.01
195 63 0.03
196 4 0.00
197 29 0.01
199 1 0.00
202 1 0.00
203 7 0.00
204 18 0.01
205 16 0.01
206 9 0.00
207 1 0.00
210 1 0.00
212 26 0.01
213 42 0.02
214 577 0.25
215 1004 0.44
216 266 0.12
217 43 0.02
218 16 0.01
219 144 0.06
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (215 bp):
CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
AGTTTCTCTCTTGGTTCTCGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC
GGGAAATCGCATCATTTGGT
Found at i:22595878 original size:430 final size:428
Alignment explanation
Indices: 22593175--22597547 Score: 4465
Period size: 430 Copynumber: 10.3 Consensus size: 428
22593165 AACTTCGTCC
* * *
22593175 CTAAATAGATTGTCACTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTTATGTGAGAA
1 CTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAA
* * * * *
22593240 TTGTTTCTTTCTTGGTTCACGGCCGAACATTCGAAGTTGACAAACTTTTACGAGTTCTTTTATAA
65 TTGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAA
** * * * *
22593305 CTTCGGTTCCTTAAAGTATTCAAGATAATCCATTCTTTAGAGCAATTTTCTAAACATTCCAAGCT
130 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-CAACATTCCATGCT
* * *
22593370 CAGGAAATC-CATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGATCTTTGAATTA
194 CGGGAAATCACATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * *
22593434 AAAACTTATTTAGGTGATAATAGTTTCTCTCTAGGTTCTT-AGCCAAACTTCCGAACTTGAAAAA
259 AAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTTGA-CCGAACTTCCGAACTTGAAAAA
* * * * * *
22593498 CCTTTATGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTAAAGACAATCTATACCTTCGAGCA
323 CTTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* **
22593563 ATTTTTCGAACATTCCATTTTCAGGAAATCGCATCAATTGTT
388 ATTTTTCAAACATTCCATGCTCA-GAAATCGCATCAATTGTT
* * * * * *
22593605 CTAAATAGATTGTCATTTTGTAAAAAAATATATGGTTTTTGAATTAAAAACTTTTATATATGTAA
1 CTAAATAG-TTGTCATTTTGTAAACAACT-TTTGGTCTTTGAATTAAAAAC--TTATTTATGTGA
* *
22593670 GAATTGTTTCTCTCTAGGTTCTCGG-CAGAACTTTTGAACTTGACAAACTTTTACGAGTTCTTTT
62 GAATTGTTTCTCTCTTGGTTCTCGGTC-GAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTT
* * ** * *
22593734 ATAACTTTGCTTCCTTAAAGTATTCAAGACGATCCATTCCGACGAGCCATTTTCCGAACAATCCA
126 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC-AACATTCCA
* *
22593799 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTAG-AAACAACTTTTGATCTTTG
190 TGCTCGGGAAATCACATCATTTGGTCTAAATAGTTGTCATTTT-GTAAACAACTTTTGGTCTTTG
* * * * * *
22593863 AATTAAAAACTTATTTAGGTGATAATAGTTTCTCTCTAGGTTCTCGGCCAAACTTCCAAACTTGA
254 AATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTTGACCGAACTTCCGAACTTGA
* * * *
22593928 AAAACCTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATT-AGAGATGATCTATACCTTC
319 AAAACTTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTC
* *
22593992 GAGCAATTTTTCAAACATTCCATTCTCAGGAAATCGCATCAATTATT
383 GAGCAATTTTTCAAACATTCCATGCTCA-GAAATCGCATCAATTGTT
* * * *
22594039 TTAAATA---G--A--TTGT---C-A-TTTT-G---TT-AA-AAAAAAGTTATTTATGTTAGAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
* * * * *
22594086 TGTTTCTTTCTTTGTTCTCGGTCGAACTTCCAAACTTGACAAACTTTAACGAGTTCTTTTATAAC
66 TGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
** * * * * *
22594151 TTTTGTTCATT--TGTATTAAAGACGATCCATTCCTTCGAGCAATTTTCCATACAGTCCATGCTT
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCA-ACATTCCATGCTC
* * * * *
22594214 GGGAAATCACATCATTAGGTCTAAATAGTTTTCATTTTGTAAACTAC-TTTGGTCTTTTAATTCA
195 GGGAAATCACATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * ** * * * *
22594278 AAATTTATTTAGGTGAGAATTGTTTCTCTTTTCCTTCTCGGCTGAACTTCTGAACTTGAAAAACT
260 AAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTTGACCGAACTTCCGAACTTGAAAAACT
* * ** * *
22594343 TTTACGAGTTCTTTTGTAACTACAATGCCTTAAATTATTCAAGACGATCCATTCCTTCGAGCAAT
325 TTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * **
22594408 ATTCCAAACATTCCATGCTCAAGAAATCGCATCATTTAAT
390 TTTTCAAACATTCCATGCTC-AGAAATCGCATCAATTGTT
* * *
22594448 CTAAATAGTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATT-AAAATTTATTTAGGTGAGAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
* * * * *
22594512 AGTTTCTCTCTTGGTTCTAGGTCGAACTTCCGAAGTTGACAAACTTTTACAAGTTCTTTTATAAC
66 TGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
* * ** * * * *
22594577 TTCAGTTCCTTAATGTATTCAAGAATATCCATTCCTTCGAGCTATTTTCTAAACATTCCAAGCTT
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-CAACATTCCATGCTC
* * * * * *
22594642 AGAAAATCGCATCATTTTGTCTAAATAGTTGTCATTTTATAAACAACTTTTTGTCTTTGAATTAA
195 GGGAAATCACATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * *
22594707 AAACTTATTTAGGTGATAATAGTTTCTCTCTAGGTTCTCTG-CCGAACTTCCTAACTTGAAAAAC
260 AAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCT-TGACCGAACTTCCGAACTTGAAAAAC
* * * * ** * *
22594771 CTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAATTATTAAAGACGATCTAAACCCTCGAGTAA
324 TTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * *
22594836 TTTTTCAAACATTCCATTCTCGGGAAATTGCATCAATTGTT
389 TTTTTCAAACATTCCATGCTC-AGAAATCGCATCAATTGTT
* * *
22594877 CTAAATAGATTGTCATTTTGTTAACAACTTTTGGTTTTTGAATTAAAAAGTTATTTATGTGAGAA
1 CTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAA
* *
22594942 TTGTTTCTCTCTAGGTTCTCGGTCGAAC-TTCTGAACTTGACAAACTTTTATGAGTTCTTTTATA
65 TTGTTTCTCTCTTGGTTCTCGGTCGAACTTTC-GAACTTGACAAACTTTTACGAGTTCTTTTATA
** * * * *
22595006 ACTTTTGTTCCTTAAAGTATTAAAGACGATCCATTCC-TCTAAGCCATTTTCCGAACAATCCATG
129 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-GAGCAATTTTCC-AACATTCCATG
* * *
22595070 CTCGGGAAATCGA-ATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACATTTGGTCCTTGAA
192 CTCGGGAAATC-ACATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * * *
22595134 TTAAAAACTTATTTAGATGATAATAGTTCCTCTCTTGGTTCTAGGA-CGAACTTCCGAACATGAC
256 TTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCT-TGACCGAACTTCCGAACTTGAA
* * *
22595198 AAACATTTACAAGTT-TTTTTTAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTC-A
320 AAACTTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * *
22595261 TGCAATTTTT-GAACATTCCATGCTCCAGAATTCGTATCAATTGTT
385 -GCAATTTTTCAAACATTCCATGCT-CAGAAATCGCATCAATTGTT
* *
22595306 CTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAAGTTATTTATGTGAGAA
1 CTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAA
* * * * * * *
22595371 TTTTTTCTTTCTTGGTTCTCGATCGAACTTCCAAACTTGACAAACTTTTACAAATTCTTTTATAA
65 TTGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAA
*** * ** *
22595436 CTTTTTTTCCTTAAAGTATTCAAGAGGATCCATTCCTTCGAGCCGTTTTCCATACAGTCCATGCT
130 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCA-ACATTCCATGCT
* * * * *
22595501 TGGGAAATCACATCATTAGATCTAAATAGTTGACATTTTGTAAACTACTTTTGGTCTTTGAATTA
194 CGGGAAATCACATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * *
22595566 AATACTTATTTAGGTGAGAAT-TTTATCTCTCTTGGTTCTTGACCGAACTTTCAAACTTGACAAA
259 AAAACTTATTTAGGTGAGAATAGTT-TCTCTCTTGGTTCTTGACCGAACTTCCGAACTTGAAAAA
* * * * *
22595630 CTTTTACAAGTTCTTATATAACTTTGGTTCCTTAAAGTATTAAAGACGATCCATTCCCTT-GAGC
323 CTTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT-CCTTCGAGC
* * * ** *
22595694 AATTTTTCTAACATTTCATGCTCGAAAAATCGCATCTTTTGGT
387 AATTTTTCAAACATTCCATGCTC-AGAAATCGCATCAATTGTT
*
22595737 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTTATTT-TGGTGAGAA
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAT-GTGAGAA
* * * * * * * *
22595801 TAGTTTCTCTCTTTGTTCACGGCCGAACTTTTGAAGTTGACAAACTTTTACAAGTTTTTTTATAA
65 TTGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAA
* * * ** *
22595866 CTTCGGTTCCTTAAACTATTCAAGATGATCCATTCTTTCGAGCAATTTCTTGAACATTCCAAGCT
130 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-TCCAACATTCCATGCT
* * *
22595931 CAGGAAATCACATCATTTGGTCTAAATAGTTGTCATTTTATAAATAACTTTTGGTCTTTGAATTA
194 CGGGAAATCACATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * * * *
22595996 AAAACTTATTTAGGTGATAATAGTTTCTCTATTGGTT-ATCAGCCGAACTTCTGAGCTTGACAAA
259 AAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTTGA-CCGAACTTCCGAACTTGAAAAA
* * * *
22596060 TTTTTACGAGTTCTTTTTTAACTTCTGTTCCTTAAAGAATTCAAGACGATCCATTCCTTCGAGTA
323 CTTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* *
22596125 ATTTTTCGAACATTCCATGCTCGAGAAATCGCATCAATTATT
388 ATTTTTCAAACATTCCATGCTC-AGAAATCGCATCAATTGTT
* *
22596167 CTAAATA---G--A--TTGT---C-A-TTTT-G----T--A--AAAAAGTTATTTATGTTAGAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
* * * * **
22596211 TGTTTCTTTCTTTGTTCTTGGTCAAACTTTCGAACTTGACAAACTTCAACGAGTTCTTTTATAAC
66 TGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
*** * * * * * * *
22596276 TTTTCTTCATTAAATTATTAAAGACGATCTATTCCTTCTAGCAATTTTCCATACAGTCCATGCTT
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCA-ACATTCCATGCTC
* * * * *
22596341 GGCAAATCACATCATTTGGTCTATATAGTTGTCATTTTGTGAACTACTTTTGGTATTTGAATTAA
195 GGGAAATCACATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * * *
22596406 AAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCCTGGCCGCACTTCCGAACTTGAAAAACT
260 AAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTTGACCGAACTTCCGAACTTGAAAAACT
* * * ** * *
22596471 ATTACGAGTTCTTTTATAACTTTGACTCCTTAAACTATTTAAGACGATCCATTCCTTCGAGCAAT
325 TTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * *
22596536 TTTTCAAACATTCCAAGCTTAGGAAATTGCATCATTTGGT
390 TTTTCAAACATTCCATGCTCA-GAAATCGCATCAATTGTT
* * *
22596576 CTAAATAGTTGTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
* ** * * * *
22596641 AGTTTCTCTCTAAGTTCTCGGTCGAACTTCCGAACTTGAAAAACCTTTACGAGTTCTTTTTTAAC
66 TGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
* * * * * * **
22596706 TTCGGTTCCTTAAATTATTCAAGATGATCTATACCTTTGAGCAATTTCTCGAACATTCCATTATC
131 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-TCCAACATTCCATGCTC
* * * * *
22596771 GGGAAATCGCATCAATTGTTCTAAATAGATTGTCACTTTGTAAACAACTTTTGGTTTTTGAATTA
195 GGGAAATCACATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * * * *
22596836 AAAAGTTATTTATGTGAGAATTA-TTTTTCTCTAGGTTCTCGATCGAACTTTCGAACTTGAAAAA
259 AAAACTTATTTAGGTGAGAA-TAGTTTCTCTCTTGGTTCTTGACCGAACTTCCGAACTTGAAAAA
* * * ** **
22596900 CTTTTTCGAATTCTTTTATAACTT-TTTTACCTTAAAGTATTCAAGATAATCCATTCCTTCGAGC
323 CTTTTACGAGTTCTTTTTTAACTTCGGTT-CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * *
22596964 CA-TTTTC---CA----ATGCTCGGGAAATCGCATCATTTGGT
387 AATTTTTCAAACATTCCATGCTC-AGAAATCGCATCAATTGTT
* * * * *
22596999 CTAAAATAGTTGTCATTTTATAAACAACTTTTGGTTTTTGAATTAAAAACTTCTATA-GATGATA
1 CT-AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATG-TGAGA
* * * * * *
22597063 ATAGATCCTCTCTTGGTTCTAGG-CTGAACTTTCGAACTTGACAAACATTTACGAGTTCTTTTTT
64 ATTGTTTCTCTCTTGGTTCTCGGTC-GAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTAT
* *
22597127 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-ATACAATTTTCTGAACATTCCAT
128 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTC-CAACATTCCAT
** * * * * *
22597191 GCTCGGGAAATCGTATCAATTGTTCTAAATAGATTTTTATTTTGT--A-AACTTTTGGTCTTTAA
191 GCTCGGGAAATCACATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGA
** * * * ** * **
22597253 ATTAAAAGGTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCACGGCCGAACATTCATAA-TTGA
255 ATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTTGACCGAAC-TTCCGAACTTGA
* * * * * *
22597317 CAAACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCG
319 AAAACTTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
** * * * * *
22597382 AGCAA-TTCCCTGAACATTCCAAGCTCAGGAAATTGCATCATTTGGT
384 AGCAATTTTTC-AAACATTCCATGCTCA-GAAATCGCATCAATTGTT
* * * * * *
22597428 CTAAATAGTTGTCATTATATAAACAAATTTTGATCTTTGAATTAAAAACTTATTTAGGTGATAAT
1 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
* * * * * *
22597493 AGTTTCTCTCTAGGTTCTCGGCCAAACTTTCGAACTTGAAAAACCTTTACGAGTT
66 TGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAACTTTTACGAGTT
22597548 TATGAAGCTT
Statistics
Matches: 3308, Mismatches: 524, Indels: 224
0.82 0.13 0.06
Matches are distributed among these distances:
408 3 0.00
409 482 0.15
410 88 0.03
411 1 0.00
412 80 0.02
413 1 0.00
414 7 0.00
415 2 0.00
416 9 0.00
417 1 0.00
418 4 0.00
419 4 0.00
420 6 0.00
421 130 0.04
422 10 0.00
423 32 0.01
424 201 0.06
425 5 0.00
426 90 0.03
427 3 0.00
428 191 0.06
429 504 0.15
430 662 0.20
431 441 0.13
432 2 0.00
433 131 0.04
434 218 0.07
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (428 bp):
CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
TGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC
TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCAACATTCCATGCTCG
GGAAATCACATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
AACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTTGACCGAACTTCCGAACTTGAAAAACTT
TTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
TTTCAAACATTCCATGCTCAGAAATCGCATCAATTGTT
Found at i:22596571 original size:215 final size:213
Alignment explanation
Indices: 22596189--22597547 Score: 1405
Period size: 215 Copynumber: 6.4 Consensus size: 213
22596179 TCATTTTGTA
* * * * * * * * *
22596189 AAAAAGTTATTTATGTTAGAATTGTTTCTTTCTTTGTTCTTGGTCAAACTTTCGAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCGAACTTTCGAACTTGAAAAA
* ** * * * * *
22596254 CTTCAACGAGTTCTTTTATAACTTTTCTTCATTAAATTATTAAAGACGATCTATTCCTTCTAGCA
66 CTT-TACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * * *
22596319 ATTTTCCATACAGTCCATGCTTGGCAAATCACATCATTTGGTCTATATAGTTGTCATTTTGTGAA
130 ATTTTCGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAA
* *
22596384 CTACTTTTGGTATTTGAATT
194 CAACTTTTGGTCTTTGAATT
* * *
22596404 AAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTC-CTGGCCGCACTTCCGAACTTGAAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTC-GGCCGAACTTTCGAACTTGAAAA
** * *
22596468 ACTATTACGAGTTCTTTTATAACTTTGACTCCTTAAACTATTTAAGACGATCCATTCCTTCGAGC
65 ACT-TTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * ** * *
22596533 AATTTTTCAAACATTCCAAGCTTAGGAAATTGCATCATTTGGTCTAAATAGTTGTCATTTTCTAA
129 AA-TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
22596598 ACAACTTTTGGTCTTTGAATT
193 ACAACTTTTGGTCTTTGAATT
* * ** * *
22596619 AAAAACTTATTTAGGTGATAATAGTTTCTCTCTAAGTTCTCGGTCGAACTTCCGAACTTGAAAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCGAACTTTCGAACTTGAAAAA
* * * * * * *
22596684 CCTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAATTATTCAAGATGATCTATACCTTTGAGCA
66 -CTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
** * * *
22596749 ATTTCTCGAACATTCCATTATCGGGAAATCGCATCAATTGTTCTAAATAGATTGTCACTTTGTAA
130 ATTT-TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTAA
*
22596814 ACAACTTTTGGTTTTTGAATT
193 ACAACTTTTGGTCTTTGAATT
* * * * * **
22596835 AAAAAGTTATTTATGTGAGAATTATTTTTCTCTAGGTTCTCGATCGAACTTTCGAACTTGAAAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCGAACTTTCGAACTTGAAAAA
* * * **
22596900 CTTTTTCGAATTCTTTTATAACTTT-TTTACCTTAAAGTATTCAAGATAATCCATTCCTTCGAGC
66 C-TTTACGAGTTCTTTTATAACTTTGGTT-CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* *
22596964 CATTTTC---CA----ATGCTCGGGAAATCGCATCATTTGGTCTAAAATAGTTGTCATTTTATAA
129 AATTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAATAGTTGTCATTTTGTAA
*
22597022 ACAACTTTTGGTTTTTGAATT
193 ACAACTTTTGGTCTTTGAATT
* * * * * * * * * *
22597043 AAAAACTTCTATAGATGATAATAGATCCTCTCTTGGTTCTAGGCTGAACTTTCGAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCGAACTTTCGAACTTGAAAAA
* * *
22597108 CATTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-ATAC
66 C-TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GC
* * * * *
22597172 AATTTTCTGAACATTCCATGCTCGGGAAATCGTATCAATTGTTCTAAATAGATTTTTATTTTGT-
129 AATTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTA
*
22597236 -A-AACTTTTGGTCTTTAAATT
192 AACAACTTTTGGTCTTTGAATT
** * * * * * *
22597256 AAAAGGTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCACGGCCGAACATTC-ATAATTGACAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCGAACTTTCGA-ACTTGAAAA
* * *
22597320 ACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGC
65 AC-TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
** * * * * *
22597385 AATTCCCTGAACATTCCAAGCTCAGGAAATTGCATCATTTGGTCTAAATAGTTGTCATTATATAA
129 AATTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* *
22597450 ACAAATTTTGATCTTTGAATT
193 ACAACTTTTGGTCTTTGAATT
* * * *
22597471 AAAAACTTATTTAGGTGATAATAGTTTCTCTCTAGGTTCTCGGCCAAACTTTCGAACTTGAAAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCGAACTTTCGAACTTGAAAAA
22597536 CCTTTACGAGTT
66 -CTTTACGAGTT
22597548 TATGAAGCTT
Statistics
Matches: 942, Mismatches: 174, Indels: 56
0.80 0.15 0.05
Matches are distributed among these distances:
207 1 0.00
208 161 0.17
209 8 0.01
212 13 0.01
213 162 0.17
214 6 0.01
215 404 0.43
216 187 0.20
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (213 bp):
AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCGAACTTTCGAACTTGAAAAA
CTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACA
ACTTTTGGTCTTTGAATT
Found at i:22598486 original size:15 final size:15
Alignment explanation
Indices: 22598463--22598500 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
22598453 CCTTCATCCA
*
22598463 TGCTCGCAACATGAG
1 TGCTCGCAACATCAG
*
22598478 TGTTCGCAACATCAG
1 TGCTCGCAACATCAG
22598493 TGCTCGCA
1 TGCTCGCA
22598501 TTGTGTTTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (15 bp):
TGCTCGCAACATCAG
Found at i:22601895 original size:50 final size:50
Alignment explanation
Indices: 22601816--22601953 Score: 154
Period size: 50 Copynumber: 2.7 Consensus size: 50
22601806 TGCATAACTT
* *
22601816 GATTTAATGATGGAAACTTTAACTAACATGGGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAA-TTTAACTAACATGAGAGTTACATAATGCATG-TCAG
* * *
22601868 GATTTATGATGCATATTTAACTAACATGTA-AGTTACTTAATGCATGTCAT
1 GATTTATGATGCAAATTTAACTAACATG-AGAGTTACATAATGCATGTCAG
* *
22601918 TATTTATGATGCAAACTTAACTAATCATGAGAGTTA
1 GATTTATGATGCAAATTTAACTAA-CATGAGAGTTA
22601954 ATGGATGTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
49 1 0.01
50 51 0.69
51 17 0.23
52 5 0.07
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.36
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGAGAGTTACATAATGCATGTCAG
Found at i:22605999 original size:50 final size:50
Alignment explanation
Indices: 22605901--22606043 Score: 171
Period size: 50 Copynumber: 2.8 Consensus size: 50
22605891 TGGATTACTA
* *
22605901 AATGCATGATTTGATTTAATGATGCAAACTTTAACTAACATGGGAGTTACAT
1 AATGCATGATATGATTT-ATGATGCAAA-TTTAACTAACATGGAAGTTACAT
* * * *
22605953 AATGCATGATAGGATTTATGATGCATATTTAACTAACATGTAAGTTACTT
1 AATGCATGATATGATTTATGATGCAAATTTAACTAACATGGAAGTTACAT
* *
22606003 AATGCATG-TCATTATTTATGATGCAAACTTAACTAATCATG
1 AATGCATGAT-ATGATTTATGATGCAAATTTAACTAA-CATG
22606044 AGAGTTAATG
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 50 0.63
51 13 0.16
52 15 0.19
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (50 bp):
AATGCATGATATGATTTATGATGCAAATTTAACTAACATGGAAGTTACAT
Found at i:22606276 original size:17 final size:17
Alignment explanation
Indices: 22606245--22606277 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22606235 CAAACACTTA
22606245 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
22606262 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
22606278 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:22609118 original size:30 final size:30
Alignment explanation
Indices: 22609084--22609179 Score: 92
Period size: 30 Copynumber: 3.2 Consensus size: 30
22609074 GTCCGTAACA
22609084 TGAGTGTTCGCAGCTCCAGTGTTTGCAACG
1 TGAGTGTTCGCAGCTCCAGTGTTTGCAACG
* * * *
22609114 TGAGTTTTCGCA--T-TA-TGTTTCTCCATAACA
1 TGAGTGTTCGCAGCTCCAGTG-TT-TGC--AACG
22609144 TGAGTGTTCGCAGCTCCAGTGTTTGCAACG
1 TGAGTGTTCGCAGCTCCAGTGTTTGCAACG
22609174 TGAGTG
1 TGAGTG
22609180 CTTGCATCTT
Statistics
Matches: 50, Mismatches: 8, Indels: 16
0.68 0.11 0.22
Matches are distributed among these distances:
26 2 0.04
27 3 0.06
28 3 0.06
30 34 0.68
32 3 0.06
33 3 0.06
34 2 0.04
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.34
Consensus pattern (30 bp):
TGAGTGTTCGCAGCTCCAGTGTTTGCAACG
Found at i:22609125 original size:60 final size:60
Alignment explanation
Indices: 22609041--22609186 Score: 220
Period size: 60 Copynumber: 2.4 Consensus size: 60
22609031 TCATAACACG
* * * * *
22609041 AGTGTTTGCAACATCAGTGCTCGCATTGTGTTTGTCCGTAACATGAGTGTTCGCAGCTCC
1 AGTGTTTGCAACGTGAGTGCTCGCATTATGTTTCTCCATAACATGAGTGTTCGCAGCTCC
**
22609101 AGTGTTTGCAACGTGAGTTTTCGCATTATGTTTCTCCATAACATGAGTGTTCGCAGCTCC
1 AGTGTTTGCAACGTGAGTGCTCGCATTATGTTTCTCCATAACATGAGTGTTCGCAGCTCC
*
22609161 AGTGTTTGCAACGTGAGTGCTTGCAT
1 AGTGTTTGCAACGTGAGTGCTCGCAT
22609187 CTTCCAAGCT
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 76 1.00
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.35
Consensus pattern (60 bp):
AGTGTTTGCAACGTGAGTGCTCGCATTATGTTTCTCCATAACATGAGTGTTCGCAGCTCC
Found at i:22609734 original size:216 final size:216
Alignment explanation
Indices: 22609331--22610071 Score: 1013
Period size: 216 Copynumber: 3.4 Consensus size: 216
22609321 ATTTCCCAAT
* * *
22609331 AAAATTTCTCGAAGGAATGGATCATCTTGAATACTTTATGGAA-TCGAAGTTATAAAAGAACTCG
1 AAAATTGCTCGAAGGAATGGATCATCTTCAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCG
* * ** *
22609395 TAAAAGTTTGACATGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATCA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCTTAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
22609460 GTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGAT
130 GTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGAT
*
22609525 TACCCGAGCATGGAATGTTCGA
195 TTCCCGAGCATGGAATGTTCGA
* * *
22609547 AAAATTGCTCGAAAGAATAGATCGTCTTCAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCATCTTCAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* * *
22609612 AAAAGTTTGATAAGTTCGGAAGTTCGTCTTAGAACCAATAGAGAAACAATTCTTACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCTTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
22609677 TTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
131 TTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGATT
** * *
22609742 TCTTGTGCATAGAATGTTC-A
196 TCCCGAGCATGGAATGTTCGA
* * * * * * *
22609762 GAAAATAGCTCGAGGGAATGGAT-ATCTTGAATACTTTGACGAACCGAATTTATAAAAGAACTCG
1 -AAAATTGCTCGAAGGAATGGATCATCTTCAATACTTTAAGGAACTGAAGTTATAAAAGAACTCG
* * *
22609826 AAAAAGTTTAACAAGTTCGGAAGTTCAT-TTAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCTT-AGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
22609890 ATTTTTTAATTCAAAGAGCAAAGGTTGATAACAAAATGAAAAACTGTTTAGACCAAATGATGCAA
129 AGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGA
22609955 TTTCCCGAGCATGGAATGTTCGA
194 TTTCCCGAGCATGGAATGTTCGA
* * * * * *
22609978 GAAATTACTCGAAGGAATGGATCGTCTTCATTACTTTATGGAACTGAAGTTATAAAAGAACTCGC
1 AAAATTGCTCGAAGGAATGGATCATCTTCAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
* *
22610043 AAAAGATTGACAAGTTCAGAAGTTCGTCT
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCT
22610072 CTGAACCTGA
Statistics
Matches: 450, Mismatches: 69, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
214 2 0.00
215 182 0.40
216 264 0.59
217 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (216 bp):
AAAATTGCTCGAAGGAATGGATCATCTTCAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCGGAAGTTCGTCTTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGATT
TCCCGAGCATGGAATGTTCGA
Found at i:22610038 original size:431 final size:418
Alignment explanation
Indices: 22609248--22610071 Score: 1166
Period size: 431 Copynumber: 1.9 Consensus size: 418
22609238 TGCTTGCATC
* * *
22609248 ACGTAAATACGTTTTTAATTCAAATACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAA
1 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* ** * *
22609313 ATGATGATATTTCCCAATAAAATTTCTCGAAGGAATGGATCATCTTGAATACTTTATGGAATCGA
66 ATGATGATATTTCACAATAAAATAGCTCGAAGGAATGGATCATCTTGAATACTTTATCGAACCGA
* * * * *
22609378 AGTTATAAAAGAACTCGTAAAAGTTTGACATGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAAC
131 AGTTATAAAAGAACTCGAAAAAGTTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAAC
*
22609443 AATTCTCACGTAAATCAGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTT
196 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTT
* *
22609508 AGACCAAATGATGCGATTACCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATAGATCGTC
261 AGACCAAATGATGCAATTACCCGAGCATGGAATGTTCGAAAAATTACTCGAAAGAATAGATCGTC
* * * *
22609573 TTCAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGATAAGTTCGGAAGTTCG
326 TTCAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGCAAAAGATTGACAAGTTCAGAAGTTCG
22609638 TCTTAGAACCAATAGAGAAACAATTCTT
391 TCTTAGAACCAATAGAGAAACAATTCTT
*
22609666 ACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAA
1 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * *
22609731 ATGATGCGATTTCTTGTGCATAGAATGTTCAGAAAATAGCTCGAGGGAATGGAT-ATCTTGAATA
66 ATGAT--GA--TATT-T-C--ACAA---T---AAAATAGCTCGAAGGAATGGATCATCTTGAATA
* **
22609795 CTTTGA-CGAACCGAATTTATAAAAGAACTCGAAAAAGTTTAACAAGTTCGGAAGTTCATTTAAG
117 CTTT-ATCGAACCGAAGTTATAAAAGAACTCGAAAAAGTTTAACAAGTTCGGAAGTTCATCCAAG
* * *
22609859 AACCAAGAGAGAAACAATTCTCACGTAAATAATTTTTTAATTCAAAGAGCAAAGGTTGATAACAA
181 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAACAA
* * *
22609924 AATGAAAAACTGTTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCGAGAAATTACTCG
246 AATGAAAAACTATTTAGACCAAATGATGCAATTACCCGAGCATGGAATGTTCGAAAAATTACTCG
* * * *
22609989 AAGGAATGGATCGTCTTCATTACTTTATGGAACTGAAGTTATAAAAGAACTCGCAAAAGATTGAC
311 AAAGAATAGATCGTCTTCAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGCAAAAGATTGAC
22610054 AAGTTCAGAAGTTCGTCT
376 AAGTTCAGAAGTTCGTCT
22610072 CTGAACCTGA
Statistics
Matches: 354, Mismatches: 37, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
418 66 0.19
420 2 0.01
422 3 0.01
423 1 0.00
424 1 0.00
426 2 0.01
429 1 0.00
431 258 0.73
432 20 0.06
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (418 bp):
ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
ATGATGATATTTCACAATAAAATAGCTCGAAGGAATGGATCATCTTGAATACTTTATCGAACCGA
AGTTATAAAAGAACTCGAAAAAGTTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAAC
AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTT
AGACCAAATGATGCAATTACCCGAGCATGGAATGTTCGAAAAATTACTCGAAAGAATAGATCGTC
TTCAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGCAAAAGATTGACAAGTTCAGAAGTTCG
TCTTAGAACCAATAGAGAAACAATTCTT
Found at i:22611473 original size:5 final size:5
Alignment explanation
Indices: 22611463--22611509 Score: 67
Period size: 5 Copynumber: 9.4 Consensus size: 5
22611453 TGCTATTTGG
* * *
22611463 AAGAA AAGAA AAGAA AAGAA AAGAA ACGAA AAGAA ATGAA ATGAA AA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AA
22611510 ATATCAGATG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.04
Consensus pattern (5 bp):
AAGAA
Found at i:22617930 original size:201 final size:202
Alignment explanation
Indices: 22617559--22618878 Score: 924
Period size: 201 Copynumber: 6.4 Consensus size: 202
22617549 AGAATCATAT
* * * * *
22617559 CAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAAATTCAAAGA-AACAAACCTTTTT
1 CAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAACATGTTT
*
22617623 ACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTTGGAAAATTG
65 ACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATG-TTCGAAAATTG
* * * * *
22617688 CTCGACGGAATAGATCATCTTTAATACTTTAAGGTACCAAAGTAAAAGTCT-GACAAGTTCGAAA
129 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTAAAAGTCTAGACAAGTTCGAAA
*
22617752 GTTCA-TGC
194 GTTCAGTCC
* * *
22617760 CAGAACCAATAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACAAAAACATGTTTA
1 CAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTA
* ** * **
22617825 CAAAATGACAAACTATTTAGACAAAATGATTTAATTTCCCAAGCATGGAATGTTCGAAAATTTTT
66 CAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCGAAAATTGCT
* * * *
22617890 TGAAGGAATGGATCGTCTTGAATACTGTTAAGGAACCAAAGTAATAAAGGATCTCAAAAAAGTTT
131 CGAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCAAAGT-A-AAA-G-TCT-AGACAAGTTC
22617955 GACAAGTTCTTAAGTTCACC
190 GA-AAGTTC---AG-T--CC
* ** * *
22617975 CAAGATCC-A-AGAGAAACAATTCTCGTGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTT
1 C-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTT
* * * * * *
22618038 AGAAAATTACAGACTATTTAAACCAAATGATGCGATTT------C-TCG-A-----GAAAATTGC
65 ACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCGAAAATTGC
* * * * * * *
22618090 TCGAAGGAATGCATTGTCTTGAATACTTTAAGGAACCAAAATTATAAAAGAACTAGTAAAATTTG
130 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-AAA--GTAAAAG-TCTAG-ACAAGTTC
22618155 GACAAGTTCGAAAGTTCTTC
190 GA-AAGTTC---AG-TC--C
* * * * * * * *
22618175 CTAGAACCAATAGAGGAACAATTCCCACATAAATAAGTTTGTAATTTAAAGACCAAAACCTGGTT
1 C-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTT
* * * * *
22618240 ACAAAATGACAAACTATTTAGACCAAATTATGCAACTTCCTGAGTATGGAATGTTCAAAAAATTG
65 ACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTC-GAAAATTG
* * *
22618305 CTCGAAGGAATGGATCGCCTTGAATACTTTAAGGTACCAAAGTAAAAGT-TTGACAAGTTCGAAA
129 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTAAAAGTCTAGACAAGTTCGAAA
22618369 GTT-AGTCC
194 GTTCAGTCC
* * * *
22618377 CAGAACCAAGAGAAAAATAATTCTCACGTAAATGAG-TTTTAATTCAAAGACCAAAACATCTTTA
1 CAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTA
* * * * *
22618441 CAAAATGACAAACTATTTAGACAAAATGATTCAATTTCCTGAGGAAGGAATGTTCGAAAAAAATT
66 CAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCG---AAAATT
* * * * * *
22618506 --TCGAAGGAATGGATTGTCTTGAATACTTTTAAAGAACCGAAGTAATAAAGGAACTCGTAAAAG
128 GCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCAAAGT-A-AAA-G-TCTAG-ACAAG
*
22618569 TTTGACAAGTTCTTAAGTTCGTC
187 TTCGA-AAGTTC---AG-TC--C
* * *
22618592 CAAGAACC-A-AGAGAAACATTTCTCACGTAAATACA-TTTTTAATTCAAATACCAAAACTTGTT
1 C-AGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAACATGTT
** *
22618654 TGGAAAATGACAAACTATTTA-AGCCAAATGATGCGATTT--C---C-T-G-A-----GAAAATT
64 TACAAAATGACAAACTATTTAGA-CCAAATGATGCAATTTCCCGAGCATGGAATGTTCGAAAATT
* *
22618705 GCTCGAAGGAATGGATCGTCTTGAATACTTTATGGAACCGAAGTTATAAAAGAACTCTTAAAAGT
128 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAG---TAAAAG---TC-T---A--
* * *
22618770 TTGACATGTTTGAACGTTC-GTCC
181 --GACAAGTTCGAAAGTTCAGTCC
* * * * ** * *
22618793 AAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTGTAATTCTAAGACCAAAAGTTGATAA
1 CAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTA
*
22618858 C-AAATGACAAACAATTTAGAC
66 CAAAATGACAAACTATTTAGAC
22618879 TAACCTTGAT
Statistics
Matches: 893, Mismatches: 146, Indels: 160
0.74 0.12 0.13
Matches are distributed among these distances:
198 1 0.00
199 7 0.01
200 188 0.21
201 245 0.27
202 137 0.15
203 11 0.01
204 5 0.01
205 5 0.01
206 3 0.00
207 19 0.02
208 18 0.02
209 15 0.02
210 9 0.01
211 3 0.00
212 2 0.00
213 9 0.01
214 99 0.11
215 65 0.07
216 52 0.06
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (202 bp):
CAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTA
CAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCGAAAATTGCT
CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTAAAAGTCTAGACAAGTTCGAAAGT
TCAGTCC
Found at i:22618456 original size:200 final size:200
Alignment explanation
Indices: 22618144--22618534 Score: 527
Period size: 200 Copynumber: 1.9 Consensus size: 200
22618134 TAAAAGAACT
** * * **
22618144 AGTAAAATTTGGACAAGTTCGAAAGTTCTTCCTAGAACCAATAGAGGAACAATTCCCACATAAAT
1 AGTAAAATTTGGACAAGTTCGAAAGTTAGTCCCAGAACCAAGAGAAAAACAATTCCCACATAAAT
* * * * *
22618209 AAGTTTGTAATTTAAAGACCAAAACCTGGTTACAAAATGACAAACTATTTAGACCAAATTATGCA
66 AAGTTTGTAATTCAAAGACCAAAACATCGTTACAAAATGACAAACTATTTAGACAAAATGATGCA
* *
22618274 ACTTCCTGAGTATGGAATGTTC-AAAAAATTGCTCGAAGGAATGGATCGCCTTGAATACTTTAAG
131 ACTTCCTGAGGAAGGAATGTTCAAAAAAATT--TCGAAGGAATGGATCGCCTTGAATACTTTAAG
22618338 GTACCAA
194 GTACCAA
* * *
22618345 AGTAAAAGTTT-GACAAGTTCGAAAGTTAGTCCCAGAACCAAGAGAAAAATAATTCTCACGTAAA
1 AGTAAAA-TTTGGACAAGTTCGAAAGTTAGTCCCAGAACCAAGAGAAAAACAATTCCCACATAAA
* * *
22618409 TGAGTTT-TAATTCAAAGACCAAAACATCTTTACAAAATGACAAACTATTTAGACAAAATGATTC
65 TAAGTTTGTAATTCAAAGACCAAAACATCGTTACAAAATGACAAACTATTTAGACAAAATGATGC
* * *
22618473 AATTTCCTGAGGAAGGAATGTTCGAAAAAAATTTCGAAGGAATGGATTGTCTTGAATACTTT
130 AACTTCCTGAGGAAGGAATGTTC-AAAAAAATTTCGAAGGAATGGATCGCCTTGAATACTTT
22618535 TAAAGAACCG
Statistics
Matches: 165, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
200 97 0.59
201 57 0.35
202 11 0.07
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.27
Consensus pattern (200 bp):
AGTAAAATTTGGACAAGTTCGAAAGTTAGTCCCAGAACCAAGAGAAAAACAATTCCCACATAAAT
AAGTTTGTAATTCAAAGACCAAAACATCGTTACAAAATGACAAACTATTTAGACAAAATGATGCA
ACTTCCTGAGGAAGGAATGTTCAAAAAAATTTCGAAGGAATGGATCGCCTTGAATACTTTAAGGT
ACCAA
Found at i:22618754 original size:617 final size:617
Alignment explanation
Indices: 22617560--22618878 Score: 1846
Period size: 617 Copynumber: 2.1 Consensus size: 617
22617550 GAATCATATC
* * * **
22617560 AGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTT-TAAATTCAAAGA-AACAAACCTTTTT
1 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTGT-AATTTAAAGACCA-AAACCTGATT
* ***
22617623 ACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTTGGAAAATTG
64 ACAAAATGACAAACTATTTAGACCAAATGATGCAACTTCCCGAGCATGGAATGTTCAAAAAATTG
* * *
22617688 CTCGACGGAATAGATCATCTTTAATACTTTAAGGTACCAAAGTAAAAGTCTGACAAGTTCGAAAG
129 CTCGAAGGAATAGATCACCTTGAATACTTTAAGGTACCAAAGTAAAAGTCTGACAAGTTCGAAAG
* * *
22617753 TTCATGCCAGAACCAATAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACAAAAAC
194 TTCATCCCAGAACCAAGAGAAAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACAAAAAC
* * *
22617818 ATGTTTACAAAATGACAAACTATTTAGACAAAATGATTTAATTTCCCAAGCATGGAATGTTCGAA
259 ATCTTTACAAAATGACAAACTATTTAGACAAAATGATTCAATTTCCCAAGCAAGGAATGTTCGAA
** * * *
22617883 AATTTTTTGAAGGAATGGATCGTCTTGAATACTGTTAAGGAACCAAAGTAATAAAGGATCTCAAA
324 AAAATTTCGAAGGAATGGATCGTCTTGAATACTGTTAAAGAACCAAAGTAATAAAGGAACTCAAA
* **
22617948 AAAGTTTGACAAGTTCTTAAGTTCACCCAAGATCCAAGAGAAACAATTCTCGTGTAAATAAGTTT
389 AAAGTTTGACAAGTTCTTAAGTTCACCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTTT
* *
22618013 TTAATTAAAAGACCAAAACTTGTTTAGAAAATTACAGACTATTTAAACCAAATGATGCGATTTCT
454 TTAATTAAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAAACCAAATGATGCGATTTCT
*
22618078 CGAGAAAATTGCTCGAAGGAATGCATTGTCTTGAATACTTTAAGGAACCAAAATTATAAAAGAAC
519 CGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAACCAAAATTATAAAAGAAC
* *
22618143 TAGTAAAA-TTTGGACAAGTTCGAAAGTTCTTCCT
584 TAGTAAAAGTTT-GACAAGTTCGAAAGTTCGTCCA
* * * * *
22618177 AGAACCAATAGAGGAACAATTCCCACATAAATAAGTTTGTAATTTAAAGACCAAAACCTGGTTAC
1 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTGTAATTTAAAGACCAAAACCTGATTAC
* * *
22618242 AAAATGACAAACTATTTAGACCAAATTATGCAACTTCCTGAGTATGGAATGTTCAAAAAATTGCT
66 AAAATGACAAACTATTTAGACCAAATGATGCAACTTCCCGAGCATGGAATGTTCAAAAAATTGCT
* * *
22618307 CGAAGGAATGGATCGCCTTGAATACTTTAAGGTACCAAAGTAAAAGTTTGACAAGTTCGAAAGTT
131 CGAAGGAATAGATCACCTTGAATACTTTAAGGTACCAAAGTAAAAGTCTGACAAGTTCGAAAGTT
* *
22618372 -AGTCCCAGAACCAAGAGAAAAATAATTCTCACGTAAATGAG-TTTTAATTCAAAGACCAAAACA
196 CA-TCCCAGAACCAAGAGAAAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACAAAAACA
** *
22618435 TCTTTACAAAATGACAAACTATTTAGACAAAATGATTCAATTTCCTGAGGAAGGAATGTTCGAAA
260 TCTTTACAAAATGACAAACTATTTAGACAAAATGATTCAATTTCCCAAGCAAGGAATGTTCG-AA
* * * **
22618500 AAAATTTCGAAGGAATGGATTGTCTTGAATACTTTTAAAGAACCGAAGTAATAAAGGAACTCGTA
324 AAAATTTCGAAGGAATGGATCGTCTTGAATACTGTTAAAGAACCAAAGTAATAAAGGAACTCAAA
** *
22618565 AAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAACATTTCTCACGTAAATACA-TT
389 AAAGTTTGACAAGTTCTTAAGTTCACCCAAGAACCAAGAGAAACAATTCTCACGTAAATA-AGTT
* * * *
22618629 TTTAATTCAAATACCAAAACTTGTTTGGAAAATGACAAACTATTTAAGCCAAATGATGCGATTTC
453 TTTAATTAAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAAACCAAATGATGCGATTTC
* * * *
22618694 -CTGAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTATGGAACCGAAGTTATAAAAGA
518 TC-GAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAACCAAAATTATAAAAGA
** * * *
22618758 ACTCTTAAAAGTTTGACATGTTTGAACGTTCGTCCA
582 ACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA
* ** *
22618794 AGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTGTAATTCT-AAGACCAAAAGTTGATAA
1 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTGTAATT-TAAAGACCAAAACCTGATTA
*
22618858 C-AAATGACAAACAATTTAGAC
65 CAAAATGACAAACTATTTAGAC
22618879 TAACCTTGAT
Statistics
Matches: 617, Mismatches: 77, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
616 98 0.16
617 512 0.83
618 7 0.01
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (617 bp):
AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTGTAATTTAAAGACCAAAACCTGATTAC
AAAATGACAAACTATTTAGACCAAATGATGCAACTTCCCGAGCATGGAATGTTCAAAAAATTGCT
CGAAGGAATAGATCACCTTGAATACTTTAAGGTACCAAAGTAAAAGTCTGACAAGTTCGAAAGTT
CATCCCAGAACCAAGAGAAAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACAAAAACAT
CTTTACAAAATGACAAACTATTTAGACAAAATGATTCAATTTCCCAAGCAAGGAATGTTCGAAAA
AATTTCGAAGGAATGGATCGTCTTGAATACTGTTAAAGAACCAAAGTAATAAAGGAACTCAAAAA
AGTTTGACAAGTTCTTAAGTTCACCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAAACCAAATGATGCGATTTCTCG
AGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAACCAAAATTATAAAAGAACTA
GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA
Found at i:22619560 original size:18 final size:18
Alignment explanation
Indices: 22619503--22619561 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
22619493 AACTTTGAAT
22619503 ATTTTTT-ATTTTTTTCA
1 ATTTTTTGATTTTTTTCA
* * *
22619520 ATATTTCGATTTTTTTCT
1 ATTTTTTGATTTTTTTCA
*
22619538 TTTTTTTGATTTTTTTCA
1 ATTTTTTGATTTTTTTCA
*
22619556 CTTTTT
1 ATTTTT
22619562 AGAAACACGA
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
17 5 0.15
18 28 0.85
ACGTcount: A:0.14, C:0.08, G:0.03, T:0.75
Consensus pattern (18 bp):
ATTTTTTGATTTTTTTCA
Found at i:22620840 original size:50 final size:50
Alignment explanation
Indices: 22620742--22620884 Score: 153
Period size: 50 Copynumber: 2.8 Consensus size: 50
22620732 TGGATTACTA
* * * *
22620742 AATGCATGATTTGATTTAATGATGGAAACTTTAACTAACACGGGAGTTACAT
1 AATGCATGATATGATTT-ATGATGCAAA-TTTAACTAACATGGAAGTTACAT
* * * *
22620794 AATGCATGATAGGATTTATGATGCATATTTAACTAACATGTAAGTTACTT
1 AATGCATGATATGATTTATGATGCAAATTTAACTAACATGGAAGTTACAT
* *
22620844 AATGCATG-TCATTATTTATGATGCAAACTTAACTAATCATG
1 AATGCATGAT-ATGATTTATGATGCAAATTTAACTAA-CATG
22620885 AGAGTTAATG
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
49 1 0.01
50 49 0.64
51 12 0.16
52 15 0.19
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (50 bp):
AATGCATGATATGATTTATGATGCAAATTTAACTAACATGGAAGTTACAT
Found at i:22621114 original size:17 final size:17
Alignment explanation
Indices: 22621083--22621115 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22621073 CAAACACTTA
22621083 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
22621100 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
22621116 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:22622993 original size:216 final size:214
Alignment explanation
Indices: 22622424--22623590 Score: 1259
Period size: 216 Copynumber: 5.5 Consensus size: 214
22622414 CTAGTAATCA
* *
22622424 AAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCTTCCAAGAACCAAAAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-AAAGAGAAA
* *
22622489 CAATTCTTACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTATTTACAAAATGACAAACTATT
65 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT-TTTACAAAATGACAAACTATT
* * * * * * **
22622553 TAGACCAAATCATGCGATTTGCAAAGCATGGATTGTTCGAAAAATTGCTTGAAATAATGGATCGT
129 TAGACCAAATGATGCAATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
*
22622618 CTTGAACA-TTGTAAGGAACCA-
194 CTTGAATACTT-TAAGGAA-CAG
* * * * *
22622639 AAGTTATAAAAGAGCTCGGAAAAGTTTGACAAGTTTGAAAATTCGTCCAAGAACC-AAGAGAAAC
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAAGAGAAAC
* * * * *
22622703 AATTATCACGTAAATAAGTTTTTAATTGAAAGACCAAATCTTGTTTACTAAATGACAATCTATTT
66 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT-TTTACAAAATGACAAACTATTT
* * * * *
22622768 AGACCAAATGATGCAATTTCCCAAGAATGGAATGTTTGAAAAATTGCTCGAGGGAATGGATCATT
130 AGACCAAATGATGCAATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTC
*
22622833 TTGAATACTTTGAGGAACAG
195 TTGAATACTTTAAGGAACAG
* * * * *
22622853 AATTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAACTTCATCCAAAAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAA-AGAGAAA
* * *
22622918 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATTACAAAATGAAAAACTATT
65 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT-TTTACAAAATGACAAACTATT
* * * * *
22622983 TAGGCCAAATGATGCGATTTACCAAGCATGGAATGTTCGAAAAATTACTTGAAGGAATGGATCGT
129 TAGACCAAATGATGCAATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
*
22623048 CTTTAATACTTTAAGGAACTA-
194 CTTGAATACTTTAAGGAAC-AG
* * * *
22623069 AAGTTATAAAAGAACTCGTAAAAGTTTTACAACTTCAGAAGTTCGTCCCAA-AACCAATAGCGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAGAACCAA-AGAGAA
*
22623133 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CACTAACTTTTTACAAAATGACAAACTAT
64 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAACTTTTTACAAAATGACAAACTAT
* * ** *
22623197 TTAGACCAAATTATGCAACTTCCTGAGTATGGAATGTTC-AGAAAATTGCTCGAAGGAATGGATC
128 TTAGACCAAATGATGCAATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATC
*
22623261 GCCTTGAATACTTT-----A-AG
192 GTCTTGAATACTTTAAGGAACAG
** * * *
22623278 --G---TACCA-AA---GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCCAGAACCATGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA-AAGAGAAA
* * *
22623334 CAATTCTCACGTAAATGAGTTATTAATTCAAAGACCAAAACATCTTTACAAAATGACAAACTATT
65 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC-TTTTTACAAAATGACAAACTATT
* * * * * * * * *
22623399 TAGACAAAATGATTCAATTTCTCGAGTATGGAATGTTCGAAATATTGTTGGAAGGAATGGATCAT
129 TAGACCAAATGATGCAATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
* *
22623464 CTTGAATACTTTTAAAGAACTG
194 CTTGAATAC-TTTAAGGAACAG
* * * * * ** *
22623486 AAGTAATAAAGGATCTCGAAAAAGTTTGATAAGTTCTTAAGTTCATCCAAGAACC-AAGAGAAAC
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAAGAGAAAC
** * *
22623550 AATTCTCACGTAAATATCTTTTAAATTCAACGA-CAAAACTT
66 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT
22623591 GTGATGAGAT
Statistics
Matches: 794, Mismatches: 127, Indels: 64
0.81 0.13 0.06
Matches are distributed among these distances:
199 3 0.00
200 71 0.09
201 85 0.11
202 4 0.01
203 2 0.00
204 3 0.00
207 2 0.00
208 2 0.00
210 2 0.00
213 46 0.06
214 142 0.18
215 170 0.21
216 225 0.28
217 37 0.05
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (214 bp):
AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAAGAGAAAC
AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTTTTACAAAATGACAAACTATTTA
GACCAAATGATGCAATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCT
TGAATACTTTAAGGAACAG
Found at i:22623470 original size:201 final size:200
Alignment explanation
Indices: 22623086--22623475 Score: 547
Period size: 200 Copynumber: 1.9 Consensus size: 200
22623076 AAAAGAACTC
* *
22623086 GTAAAAGTTTTACAACTTCAGAAGTTCGTCCCAAAACCAATAGCGAAACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAACTTCAGAAGTTCGTCCCAAAACCAATAGAGAAACAATTCTCACGTAAATA
* * * * *
22623151 AGTTTTTAATTCAAAGACACTAACTTTTTACAAAATGACAAACTATTTAGACCAAATTATGCAAC
66 AGTTATTAATTCAAAGACACAAACTCTTTACAAAATGACAAACTATTTAGACAAAATGATGCAAC
*
22623216 TTCCTGAGTATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGCCTTGAATACTTTAAGGTA
131 TTCCTGAGTATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCACCTTGAATACTTTAAGGTA
22623281 CCAAA
196 CCAAA
* *
22623286 GTAAAAGTTTGACAAGTTC-GAAAGTTCGTCCCAGAACC-ATGAGAGAAACAATTCTCACGTAAA
1 GTAAAAGTTTGACAACTTCAG-AAGTTCGTCCCAAAACCAAT-AGAGAAACAATTCTCACGTAAA
* *
22623349 TGAGTTATTAATTCAAAGAC-CAAAACATCTTTACAAAATGACAAACTATTTAGACAAAATGATT
64 TAAGTTATTAATTCAAAGACAC-AAAC-TCTTTACAAAATGACAAACTATTTAGACAAAATGATG
* * * *
22623413 CAA-TTTCTCGAGTATGGAATGTTC-GAAATATTGTTGGAAGGAATGGATCATCTTGAATACTTT
127 CAACTTCCT-GAGTATGGAATGTTCAGAAA-ATTGCTCGAAGGAATGGATCACCTTGAATACTTT
22623476 TAAAGAACTG
Statistics
Matches: 168, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
199 4 0.02
200 83 0.49
201 81 0.48
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (200 bp):
GTAAAAGTTTGACAACTTCAGAAGTTCGTCCCAAAACCAATAGAGAAACAATTCTCACGTAAATA
AGTTATTAATTCAAAGACACAAACTCTTTACAAAATGACAAACTATTTAGACAAAATGATGCAAC
TTCCTGAGTATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCACCTTGAATACTTTAAGGTA
CCAAA
Found at i:22625933 original size:830 final size:829
Alignment explanation
Indices: 22624328--22631372 Score: 6644
Period size: 832 Copynumber: 8.4 Consensus size: 829
22624318 AAAAATAATT
* *
22624328 CGAGAAAATTGCTCGAAGGAATGCATCATCTTGAATACTTTAAGGAAACGAAATTATAAAAGAAC
1 CGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGG-AACGAAGTTATAAAAGAAC
* * * *
22624393 TAGTAAAAGTTTGACAAGTTCAAAAGTTCTTCCCATAACCAATAGAGTAACAATTCTCACGTAAA
65 TCGTAAAAGTTTGACAAGTTCGAAAGTTCTTCCCAGAACCAATAGAGAAACAATTCTCACGTAAA
* * * **
22624458 TAAGTTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGGCCAAATGATTT
130 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
*
22624523 TATTAACCGAGCATGGAATGTTAGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAG
195 GATTAACCGAGCATGGAATGTTAGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAG
** * * *
22624588 GAACCGAAGTTATAACGGAACTCGTAAAAGCTTGACAAGTTTGAAAGTTTGTCCAAGAACCAAGA
260 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* * * *
22624653 GAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACACAAACTTTTTTAAAAAAAATGAT
325 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACAAACTTGTTT--ACAAAATGAC
* ** * * *
22624718 AAACTATTTAGACCAAATTATTTGATTTCTTGAGCATGGAATGTTCAAAAAATTGCTTGATAGAA
388 AAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATATTCAAAAAATTGCTT-AAAGAA
* * * * *
22624783 TGAATCGTCTTGATTACTTTAAGGTACCAAAGTAAAAGTTTGACAAGTTCGAAAGTTCGTTCC-A
452 TGGATCATCTTGAATATTTTAAGGTACCAAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTTCCAA
* * * *
22624847 GAACCAGGAGAGAAATAATTCTCACATAAATGAGTTTTTAATTCAAAGACCAAAACATGTTTACA
517 GAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
*
22624912 AAATGACAAACTATTTAGA-CAAACTGATTCAATTTCCCGAGCATGGAATGTTTGTAAATTTTTT
582 AAATGACAAACTATTTAGACCAAA-TGATTCAATTTCCCGAGCATGGAATGTTTGGAAATTTTTT
* *
22624976 GAAGGAATAGATCGTCTTGAATACTTTTAAGGAATCGAAGTAATAAAGGATCTCGAAAAAG-TGA
646 GAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTAATAAAGGATCTCGAAAAAGTTGA
* * * * *
22625040 CAAGTTTTTAAGTTCATCCAAGAACCAAGAGAAACAATTCTCACGTAAATAACTTTTTAATTAAA
710 CAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAAAAATTCTCACGTAAATAAGTTTTTAATTCAA
*
22625105 AGACCAAAATCTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGCAATTTCC
775 AGACCAAAA-CTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCC
* * *
22625161 CGAG-AAATTGCTCGAAGGAATGCATCATCTTGAATACTTTAAGGAAAGAAAATTATAAAAGAAC
1 CGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAACG-AAGTTATAAAAGAAC
* *
22625225 TAGTAAAAGTTTGACAAGTTCGAAAGTTCTTCCCAGAACCAATAGAGTAACAATTCTCACGTAAA
65 TCGTAAAAGTTTGACAAGTTCGAAAGTTCTTCCCAGAACCAATAGAGAAACAATTCTCACGTAAA
* * * * * **
22625290 TAAGTTTTTAATTTAAAGACCAAAACCTATTTATAAAATGACAAACTATTTAGACCGAATGATTT
130 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* *
22625355 GATTAACCGAGCATGGAATGTTAGGAAAACTGCTCGAAGGAATAGATCGTCTTGAATGCTTTAAG
195 GATTAACCGAGCATGGAATGTTAGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAG
* * ** * * * *
22625420 GAACCAAAATTATAACGGAACTCATAAAAGCTTGAGAAGTTCGAAAGTTTGTCCAAGAACCAAGA
260 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
* * *
22625485 GAGAAGA-AATTGTAACGTAAATAAGTTTTTAATTCAAAGACACAAACTTTTTTACAAAATGACA
325 GAGAA-ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACAAACTTGTTTACAAAATGACA
* *
22625549 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATACTCAAAAAATTGCTTAATAGAAT
389 AACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATATTCAAAAAATTGCTTAA-AGAAT
*
22625614 GGATCATCTTGATTATTTTAAGGTACCAAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTTCC-AG
453 GGATCATCTTGAATATTTTAAGGTACCAAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTTCCAAG
*
22625678 AACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAACAAT-TTTACA
518 AACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAAC-TTGTTTACA
* *
22625742 AAAAGACAAACTATTTAGA-CAAACTGATTTAATTTCCCGAGCATGGAATGTTTGGAAATTTTTT
582 AAATGACAAACTATTTAGACCAAA-TGATTCAATTTCCCGAGCATGGAATGTTTGGAAATTTTTT
22625806 GAAGGAATGGATCGTCTTGAATACTTTTAAGGAACCGAAGTAATAAAGGATCTCGAAAAAG-TGA
646 GAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTAATAAAGGATCTCGAAAAAGTTGA
* *
22625870 CAAGTTCTTAAGTTTGTCCAAGAACCAAGAGAAAAAATTCTCACGTAAATAAGTTTTTAATTAAA
710 CAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAAAAATTCTCACGTAAATAAGTTTTTAATTCAA
* * *
22625935 AGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATAATGCAATTTCT
775 AGACCAAAAC-TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCC
*
22625991 CGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAAACGAAATTATAAAAGAAC
1 CGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGG-AACGAAGTTATAAAAGAAC
* * * *
22626056 TAGTAAAAGTTTGACAAGTTCAAAAGTTCTTCCCATAACCAATAGAGTAACAATTCTCACGTAAA
65 TCGTAAAAGTTTGACAAGTTCGAAAGTTCTTCCCAGAACCAATAGAGAAACAATTCTCACGTAAA
* * **
22626121 TAAGTTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTT
130 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* *
22626186 TATTAACCGAGCATGGAATGTTGGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAG
195 GATTAACCGAGCATGGAATGTTAGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAG
* * * * *
22626251 GAACTGAAGTTATAACAGAACTCGTAAAA-TCTTGATAAGTTCGAAAGTTCATCCAAGAACCATG
260 GAACCGAAGTTATAAAAGAACTCGTAAAAGT-TTGACAAGTTCGAAAGTTCGTCCAAGAACCAAG
* * * *
22626315 AGAGAAGCAATTCTCACGTAACTAAG-TTTTAATTCAAAGACACAAAGTTTTTTACAAAATGACA
324 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACAAACTTGTTTACAAAATGACA
* * *
22626379 AACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCAGAAAATTGCTTGACAGAAT
389 AACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATATTCAAAAAATTGCTT-AAAGAAT
* * *
22626444 GGATCGTCTT-AATTACTTTAAGGTACCAAAGTAAAAGTTTGACAAGTTCGAAAGTTCGTTCC-A
453 GGATCATCTTGAA-TATTTTAAGGTACCAAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTTCCAA
* * * *
22626507 GAACCAAGAGAGAAATAATTCTCACGTAAATGAGTTTTTAATTTAAAGACCAAAACAAT-TTTCC
517 GAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAAC-TTGTTTAC
* *
22626571 AAAATGACAAACTATTTAGA-CAAACTGATTCAATTTCCCGAGCACGGAATGTTTGGTAATTTTT
581 AAAATGACAAACTATTTAGACCAAA-TGATTCAATTTCCCGAGCATGGAATGTTTGGAAATTTTT
* *
22626635 TGAAGGAATGGATCGTCTTGAATACTTTTAAGGAACAGAAGTAATAAAGGATCTCAAAAAAGTTT
645 TGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTAATAAAGGATCTCGAAAAAG-TT
* * *
22626700 GACAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACATAAATAAGTTTTTAATTA
708 GACAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAAAAATTCTCACGTAAATAAGTTTTTAATTC
* * ** *
22626765 AAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTTGACCAAATGATGTGATTTGC
773 AAAGACCAAAAC-TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCC
* * *
22626823 CGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTCTAAGGAAATGAAATTATAAAAGAAC
1 CGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGG-AACGAAGTTATAAAAGAAC
* *
22626888 TAGTAAAAGTTTGACAAGTTC-AGAAGTTCTTCCCAGAACCAATAGAGTAACAATTCTCACGTAA
65 TCGTAAAAGTTTGACAAGTTCGA-AAGTTCTTCCCAGAACCAATAGAGAAACAATTCTCACGTAA
* * * * *
22626952 ATAAGTTTTTAATTTAAAGACCAAAACCTATTTACAAAATGACAAACTTTTTAGACCAAATGATT
129 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * *
22627017 CAACTACCCGAACATGGAATGTTCA-GAAAATTGCTCGAAGGAAT-GTATTGTCTTGAATATTTT
194 CGATTAACCGAGCATGGAATGTT-AGGAAAATTGCTCGAAGGAATAG-ATCGTCTTGAATACTTT
* * * * ** *
22627080 AAGGAACCAAAGTTATAAAGGAACTCGTAAAAGTTTGAGAAGTTCGGAAGTTTTTCTAAGAACCA
257 AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCA
*
22627145 AGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACACAAACTT-TTTA-AAAATGA
322 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACAAACTTGTTTACAAAATGA
* * * * * * *
22627208 CAAACTATTTAGACCAAATTATGCGACTTCTTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGA
387 CAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATATTCAAAAAATTGCT-TAAAGA
* * ** ** *
22627273 ATGGATTACCTTGAATACATTAAGGTACCAAAGTAAAAGTTTGACAAGTTTAGAAGTTCG-TCCC
451 ATGGATCATCTTGAATATTTTAAGGTACCAAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTTCCA
* *
22627337 AGAACCATGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAACTTCTTTAC
516 AGAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
* * * *
22627402 AAAATGACAAACTATTTAGACAAAATGATTCAATTTCCCGAGTATGGAATGTTCGGAAAATTGTT
581 AAAATGACAAACTATTTAGACCAAATGATTCAATTTCCCGAGCATGGAATGTTTGG-AAATTTTT
* *
22627467 GGAAGGAATGGATCGTCTTGAATACTTTTAAAGAACCGAAGTAATAAAGGATCTC-ATAAAAGTT
645 TGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTAATAAAGGATCTCGA-AAAAG-T
* * *
22627531 TGACAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATATGTTTTAAATT
707 TGACAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAAAAATTCTCACGTAAATAAGTTTTTAATT
* *
22627596 -------C--AA-TG---AC------A-AAACT-TGT-G-----ATGA-G--ATTTTC
772 CAAAGACCAAAACTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCC
* * * * *
22627624 TGACAAAATTGCTCGAAGGAATGGATTGTCTT-AACTACTTTCTA-GAATCGAAGTTATAAAAGA
1 CGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAA-TACTTT-AAGGAA-CGAAGTTATAAAAGA
* * * * *
22627687 ACTCGTAAAAGTTTGACATGTTCGGAAGTT-TGTCCAAGAACC-A-AGAGAAACAATTCTCATGC
63 ACTCGTAAAAGTTTGACAAGTTCGAAAGTTCT-TCCCAGAACCAATAGAGAAACAATTCTCACGT
* * * * * *
22627749 AAATATGTTTTTAATTCAAAGACCAAAAGTTGATAACAATATGACAAACTATTTAGACTAAACT-
127 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TG
** * * * **
22627813 ATGCGATTTCCCGAGCATGGAATGCTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATTTTT
191 ATGCGATTAACCGAGCATGGAATGTTAGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTT
* * * * * *
22627878 TAAGGAAGCGAAGATATAAAAGAGCTCGCT-AAAGTTTGACAAGTACGGAAGTTCATCCAAGAAC
256 TAAGGAACCGAAGTTATAAAAGAACTCG-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAAC
* * * * * *
22627942 CATGAGAGAAACAAATCTTACATAAATAATGTTTTTAATTCAAAAACTA-AAAGTTGTTTACAAA
320 CAAGAGAGAAACAATTCTCACGTAAATAA-GTTTTTAATTCAAAGAC-ACAAACTTGTTTACAAA
* * * ** * ** *
22628006 ATAACAAACTATTGAGACCAAATGATGCGTTTTCCAAAGCATTG-ATCATTCGTAAAATTGCTCA
383 ATGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAAT-ATTCAAAAAATTGCTTA
* * * **
22628070 AATGAATGGATCGTCTTGAATACTGTAAGGAATCGAAGTTATAAAAGAGCTCGTAAAAGTTTGAC
447 AA-GAATGGATCATCTTGAATA-T-T------T-TAAGGTA-CCAA-A----GTAAAAGTTTGAC
** *
22628135 AAGTTCGGAAGTTCG-TCCAAGAACC-A-AGAGAAATGATTCTCACGTAAATAAGTTTTTAATTC
496 AAGTTCGGAAGTTCGTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTC
* * * *
22628197 AAAGACCACATCTTGTTTACATAATGACAAACTATTTAGACCGAATGATTCAATTTCCCGAGCAT
561 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCAATTTCCCGAGCAT
* * ** * * * * * **
22628262 GGAATGTTTGAAAAAATGCTCGAGGGAATGGATCATCTTGAATACTTTGAGGAACCGAATTTCTA
626 GGAATGTTTG-GAAATTTTTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTAATA
* * * * *
22628327 AAAGAACTCGTAAAAGTTTGACAAGTT-TGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
690 AAGGATCTCGAAAAAG-TTGACAAGTTCT-TAAGTTCGTCCAAGAACCAAGAGA-AAA-AATTCT
* * * * *
22628391 CACGTAAATAAGTTTTTTAATTCAAACACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACC
751 CACGTAAATAAG-TTTTTAATTCAAAGACCAAAA-CTGTTTACAAAATGACAAACTATTTAGACC
*
22628456 AAATGATGCGATTTCCC
814 AAATGATGCAATTT-CC
* * * * * * *
22628473 GAGCATGGAATGTTTAGAAAATTGCTGGAAGAAATGGATCGTCTTTAAGACTATAAGGAACCAAA
1 ---C-------G---AGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAA-CGAA
* * * * * *
22628538 GTAATAAAAGAACTCGTGAAAGTTTGACGAGTTCGAAAGTTCGTCTCAGAAGCAATAGAGAAACA
52 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCTTCCCAGAACCAATAGAGAAACA
* * * *
22628603 ATTCTCACGTAAATAAATTTTTAATGCAAAGACCAAAATTTGTTTACAAAATGTCAAACTATTTA
117 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
* * *** * * * * * *
22628668 GACCAAATGATGTGATTTATTAAGTATGGAATGTTCGGAAAGTTGCTCAAAGGACTGGATCGTCT
182 GACCAAATGATGCGATTAACCGAGCATGGAATGTTAGGAAAATTGCTCGAAGGAATAGATCGTCT
* * * * *
22628733 TGAATGCTTTAAGGATCCGAAATTATAAAAGAACTCGTAAAAGTTTGATAAGTTTTG-AAGTTCG
247 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGAAAGTTCG
* * * * *
22628797 TCTCGA-AACCAATAGAGAAACAATTATCACGTAAATAAGTTTTTAATTTAAAGAC-CAAAACCT
311 TC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAC-AAACTT
* * * * ** * ****
22628860 GTCTACAAAATGACAAACTATTTAAACCAAATTATTCGATTAACTGAGCATGGAATGTAGGGAAA
374 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATATTCAAAAA
* * * * *
22628925 ATTGCTCGAAGGAATTGA--ATACTTTAAGGAACTGAAGTTATAACGGAACTC--A-TAAAAGTT
439 ATTGCT-TAAAGAATGGATCAT-C-TT---GAA-T--A-TTTTAA-GGTAC-CAAAGTAAAAGTT
* * * *
22628985 TGACAAGTTTGGAAGTTC-ATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTA
492 TGACAAGTTCGGAAGTTCGTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTA
* * * * * *
22629049 ATTCAAAGA-CACAAACTTTTTTACAAAATGACAAGCTATTTAAACCAAATGATGCAATTTTCTG
557 ATTCAAAGACCA-AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCAATTTCCCG
* * ** * * * * *
22629113 AGCATGGAATGTTCAGAAAATTGGTCGACGGAATGGATCGTCTTGAATTCTTTAAGGTACCAAAG
621 AGCATGGAATGTT-TGGAAATTTTTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
** * *
22629178 T-A-AAA-G---T--------TTGACAAGTTCGAAAGTTCGTCCCAGAACCAAGAAAGAAACAAT
685 TAATAAAGGATCTCGAAAAAGTTGACAAGTTCTTAAGTTCGTCCAAGAACCAAG--AGAAAAAAT
* * * * *
22629229 TTTCACGTAAATGAGTTCTTAATTCAAAGGCCAAAAGATGTTTACAAAATGACAAACTATTTAGA
748 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-CTGTTTACAAAATGACAAACTATTTAGA
*
22629294 -CAAACTGATTCAATTTCC
812 CCAAA-TGATGCAATTTCC
* * *
22629312 TGAGCATGGAATGTTCGTAAAATT-TTTGAAGGTAT-CAATCGTCTTGAATACTTTTAAGGAACC
1 ----C---G-A-----G-AAAATTGCTCGAAGGAATGC-ATCGTCTTGAATAC-TTTAAGGAA-C
* * * * * ** * *
22629375 AAAGTAATAAAGGATCTCGAAAAAG--TGACAAGTTCTTAAGTTCGTCCAAGAACC-A-AGAGAA
49 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCTTCCCAGAACCAATAGAGAA
* * * * * *
22629436 ACAATCCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAACAAGATGACAAACTAT
114 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* ** * * * *
22629501 TTAGACTAAACT-ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATC
179 TTAGACCAAA-TGATGCGATTAACCGAGCATGGAATGTTAGGAAAATTGCTCGAAGGAATAGATC
* * *
22629565 GTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGT
243 GTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGT
* * * *
22629630 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAAGTTTTTAATTCAAAAGATTAAAA
308 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-AAGTTTTTAATTC-AAAGA-CACAA
* *
22629695 AGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTT-CTAGAGCATGG-ATCATT
370 ACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCT-GAGCATGGAAT-ATT
** * * * * *
22629758 CGTAAAATTTCTCAAAGCAATGGATCATCTTGAATAATGTAAGGAACCGAAGTTATAAAAGAGCT
433 CAAAAAATTGCTTAAAG-AATGGATCATCTTGAATATTTTAAGGTACC----------AA-AG--
*
22629823 CATAAAAGTTTGACAAGTTTGGAAGTTCG-TCCAAGAACC-A-AGAGAAACAATTCTCACGTAAA
484 --TAAAAGTTTGACAAGTTCGGAAGTTCGTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* ** * *
22629885 TGAGTTTTTAATTCAAATACCAAATTTTGTTTGCAAAATGACAAACTATTTAGACCGAATGATTC
547 TGAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTC
* * * * ** * * ** *
22629950 AATTTCCCGAGTATGGAGTGTTTGAAAAATTGCTCAAGGGAATAGATTATCTTGAATACTTTGAG
612 AATTTCCCGAGCATGGAATGTTTGGAAATTTTTTGAA-GGAATGGATCGTCTTGAATACTTTAAG
* * * * * * ** * **
22630015 GAATCGAATTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAAAAAAGA
676 GAACCGAAGTAATAAAGGATCTCGAAAAAG-TTGACAAGTTCTTAAGTTCGTCCAAGAACCAAGA
* * * * *
22630080 GAGAAACAATTCTCACGTTAATAAGTTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAA
740 GA-AAA-AATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAAA-CTGTTTACAAAATGACA
*
22630145 AACTATTTAGACCAAATGATGCGATTTCCC
801 AACTATTTAGACCAAATGATGCAATTT-CC
* * * * *
22630175 GAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGACCGTCTTCAATAATTTAAGGAACCGAA
1 ---C---G-A------GAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAA-CGAA
* * * * * *
22630240 GTTGTAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCTCAGAACCTATAGAGAAATA
52 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCTTCCCAGAACCAATAGAGAAACA
* * * * *
22630305 ATTCTCACATAAATAAATTTTTAATTCAAAAACCAAAATTTGTTTACAAAATGACAAACAATTTA
117 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
* * * * *
22630370 GTCCAAATGATGCGATT-TCTTGTGCTTGGAATGTTTA-GAAAATTGCTCGAAGGAAT-GCATCG
182 GACCAAATGATGCGATTAAC-CGAGCATGGAATG-TTAGGAAAATTGCTCGAAGGAATAG-ATCG
* *
22630432 TCTTGAATGCTTTAAGGATCCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCTG-AAGT
244 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGT
* ** *
22630496 TCGTCCCAA-AACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTGAAGACAAAAAC
308 TCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACAAAC
* * * * * ***
22630560 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTAACC-AAGGATGAAATATTGGG
372 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT-TCCTGAGCATGGAATATTCAA
* * * * * * **
22630624 AAAACTACTTGAAGGAATGTATCGTCTTGAATACTTTAGGGAACCGAAGTTATAAAGGAACTTGT
436 AAAATTGCTT-AAAGAATGGATCATCTTGAATA-TTT---TAA--G--G-TA-CCA--AA---GT
** *
22630689 AAAAGTTTGACAAGTTCGGAAGTTCG-TCCAAGAATAAAGAGAGAAACAATTCTCACGTAAATAA
485 AAAAGTTTGACAAGTTCGGAAGTTCGTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATGA
* * * *
22630753 GTTTTTAATTCAAAGA-CACAAACTTTTTTTTCCAAAATGACAAACTATTTAGACCAAATAATGC
550 GTTTTTAATTCAAAGACCA-AAAC--TTGTTTACAAAATGACAAACTATTTAGACCAAATGATTC
* * * ** * * *
22630817 GATTTCCTGAGCATGGAATGTTTGGAAAATTACTCAACGGAATGGATCGCCATGAATACTTTAAG
612 AATTTCCCGAGCATGGAATGTTTGGAAATTTTTTGAA-GGAATGGATCGTCTTGAATACTTTAAG
* * * *
22630882 GTACCAAAGT-A-AAA-G-T-TTG-ACAAGTTCGA-AAG-T-TT--G-TC--CC-AGAACCAAGA
676 GAACCGAAGTAATAAAGGATCTCGAAAAAGTT-GACAAGTTCTTAAGTTCGTCCAAGAACCAAGA
*
22630932 GAGAAACAATTCTCACGTAAA-AGAGTTTTTAATTCAAAGACCAAAACATCTTTACAAAATGACA
740 GA-AAA-AATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAAC-TGTTTACAAAATGACA
** *
22630996 AACTATTTAGAAAAAATGATTCAATTTCC
801 AACTATTTAGACCAAATGATGCAATTTCC
* * * *
22631025 TGAGCATGTAATGTTAAGAAAAATT-TTTGATGGAATGGATCGTCTTGAATACTTTTAAGGAACC
1 ----C-------G---AG-AAAATTGCTCGAAGGAATGCATCGTCTTGAATAC-TTTAAGGAA-C
* * * ** * *
22631089 GAAGTAATAAAGGAACTCGAAAAAGTTTGACAAGTTCTTAAGTTCATCCAAGAACC-A-AGAGAA
49 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCTTCCCAGAACCAATAGAGAA
* * *
22631152 ACAATTCTCACGTAAATAAGTTTTTGATTCAAATACCAAAACTTGTTTAGAAAATGACAAACTAT
114 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
*
22631217 TTAGACCAAAT-A----ATT---C-A--AT----T-TCTCGAGAAAATTGCTCGAAGGAAT-GCA
179 TTAGACCAAATGATGCGATTAACCGAGCATGGAATGT-TAG-GAAAATTGCTCGAAGGAATAG-A
* * * * * * *
22631265 TCGACTTGAATACTTTAAGGAACCAAAATTATAATAGAAGTAGTAAAAGTTTGACAAGTTCGGAA
241 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* * *
22631330 GTTCTTCCCAA-AACCAATAGAGAAACAATTCTCACATAAATAA
306 GTTCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
22631373 AGACCAAAAC
Statistics
Matches: 5281, Mismatches: 678, Indels: 503
0.82 0.10 0.08
Matches are distributed among these distances:
799 197 0.04
800 30 0.01
801 96 0.02
802 68 0.01
803 1 0.00
804 4 0.00
809 1 0.00
810 3 0.00
811 10 0.00
812 3 0.00
813 2 0.00
814 60 0.01
815 130 0.02
816 17 0.00
817 43 0.01
818 1 0.00
821 2 0.00
823 2 0.00
824 1 0.00
825 1 0.00
826 2 0.00
828 2 0.00
829 3 0.00
830 759 0.14
831 549 0.10
832 924 0.17
833 30 0.01
834 2 0.00
835 9 0.00
836 322 0.06
837 15 0.00
838 40 0.01
839 94 0.02
840 95 0.02
841 46 0.01
842 2 0.00
843 4 0.00
845 15 0.00
846 121 0.02
847 4 0.00
848 43 0.01
849 3 0.00
850 76 0.01
851 83 0.02
852 94 0.02
853 3 0.00
854 38 0.01
855 7 0.00
856 136 0.03
857 3 0.00
859 6 0.00
860 7 0.00
861 53 0.01
862 182 0.03
863 223 0.04
864 236 0.04
865 66 0.01
866 203 0.04
867 103 0.02
868 1 0.00
869 3 0.00
871 1 0.00
872 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (829 bp):
CGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAACGAAGTTATAAAAGAACT
CGTAAAAGTTTGACAAGTTCGAAAGTTCTTCCCAGAACCAATAGAGAAACAATTCTCACGTAAAT
AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
ATTAACCGAGCATGGAATGTTAGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGG
AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAG
AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACAAACTTGTTTACAAAATGACAAA
CTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATATTCAAAAAATTGCTTAAAGAATGGA
TCATCTTGAATATTTTAAGGTACCAAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTTCCAAGAAC
CAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
GACAAACTATTTAGACCAAATGATTCAATTTCCCGAGCATGGAATGTTTGGAAATTTTTTGAAGG
AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTAATAAAGGATCTCGAAAAAGTTGACAAGTT
CTTAAGTTCGTCCAAGAACCAAGAGAAAAAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
AAACTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCC
Found at i:22626793 original size:214 final size:215
Alignment explanation
Indices: 22626475--22627609 Score: 1147
Period size: 214 Copynumber: 5.4 Consensus size: 215
22626465 GGTACCAAAG
*
22626475 TAAAAGTTTGACAAGTTC-GAAAGTTCGTTCC-AGAACCAAGAGAGAAATAATTCTCACGTAAAT
1 TAAAAGTTTGACAAGTTCTG-AAGTTCG-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
22626538 GAGTTTTTAATTTAAAGACCAAAACAATTTTCCAAAATGACAAACTATTTAGA-CAAACTGATTC
64 AAGTTTTTAATTCAAAGACCAAAAC-TTTTTACAAAATGACAAACTATTTAGACCAAA-TGATTC
* * ** ** *
22626602 AATTTCCCGAGCACGGAATGTTTGGTAATTTTTTGAAGGAATGGATCGTCTTGAATACTTTTAAG
127 AATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAG
*
22626667 GAACAGAAGTAATAAAGGATCTCA
192 GAACAGAAGTAATAAAGGAACTCA
* * *
22626691 AAAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACATAAATAA
1 TAAAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
22626754 GTTTTTAATTAAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTTGACCAAATGATGT-GA
66 GTTTTTAATTCAAAGACCAAAACTT-TTTACAAAATGACAAACTATTTAGACCAAATGAT-TCAA
* * *
22626818 TTT-----GC--CG-A-----GAAAATTGCTCGAAGGAATGCATCGTCTTGAATAC-TCTAAGGA
129 TTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAGGA
* * *
22626869 A-ATGAAATTATAAAAGAACT-A
194 ACA-GAAGTAATAAAGGAACTCA
* * * * *
22626890 GTAAAAGTTTGACAAGTTCAGAAGTTCTTCCCAGAACCAATAGAGTAACAATTCTCACGTAAATA
1 -TAAAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
22626955 AGTTTTTAATTTAAAGACCAAAACCTATTTACAAAATGACAAACTTTTTAGACCAAATGATTCAA
65 AGTTTTTAATTCAAAGACCAAAA-CTTTTTACAAAATGACAAACTATTTAGACCAAATGATTCAA
* * * * *
22627020 CTACCCGAACATGGAATGTTCAGAAAATTGCTCGAAGGAATGTATTGTCTTGAATA-TTTTAAGG
129 TTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAGG
* *
22627084 AACCA-AAGTTATAAAGGAACTCG
193 AA-CAGAAGTAATAAAGGAACTCA
* * ** * *
22627107 TAAAAGTTTGAGAAGTTCGGAAGTTTTTCTAAGAACCAAGAGAGAAACAATTCTCATGTAAATAA
1 TAAAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
22627172 GTTTTTAATTCAAAGA-CACAAACTTTTTA-AAAATGACAAACTATTTAGACCAAATTATGCGAC
66 GTTTTTAATTCAAAGACCA-AAACTTTTTACAAAATGACAAACTATTTAGACCAAATGATTCAAT
** *** *
22627235 TTCTTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATTACCTTGAATAC-ATT-----
130 TTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAGGA
**
22627294 A-AG--GTACCAAA-G------
194 ACAGAAGTAATAAAGGAACTCA
* * *
22627306 TAAAAGTTTGACAAGTT-TAGAAGTTCGTCCCAGAACCATGAGAGAAACAATTCTCACGTAAATG
1 TAAAAGTTTGACAAGTTCT-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
*
22627370 AGTTTTTAATTCAAAGACCAAAACTTCTTTACAAAATGACAAACTATTTAGACAAAATGATTCAA
65 AGTTTTTAATTCAAAGACCAAAACTT-TTTACAAAATGACAAACTATTTAGACCAAATGATTCAA
* * * *
22627435 TTTCCCGAGTATGGAATGTTCGGAAAATTGTTGGAAGGAATGGATCGTCTTGAATACTTTTAAAG
129 TTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAGG
* *
22627500 AACCGAAGTAATAAAGGATCTCA
193 AACAGAAGTAATAAAGGAACTCA
* *
22627523 TAAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAT
1 TAAAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* *
22627586 GTTTTAAATTCAATGA-CAAAACTT
66 GTTTTTAATTCAAAGACCAAAACTT
22627610 GTGATGAGAT
Statistics
Matches: 760, Mismatches: 104, Indels: 112
0.78 0.11 0.11
Matches are distributed among these distances:
199 79 0.10
200 59 0.08
201 106 0.14
202 80 0.11
203 2 0.00
205 1 0.00
206 6 0.01
207 4 0.01
208 1 0.00
209 4 0.01
210 7 0.01
211 1 0.00
213 2 0.00
214 160 0.21
215 54 0.07
216 159 0.21
217 33 0.04
218 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (215 bp):
TAAAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
GTTTTTAATTCAAAGACCAAAACTTTTTACAAAATGACAAACTATTTAGACCAAATGATTCAATT
TCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAGGAAC
AGAAGTAATAAAGGAACTCA
Found at i:22627489 original size:201 final size:199
Alignment explanation
Indices: 22627106--22627491 Score: 522
Period size: 199 Copynumber: 1.9 Consensus size: 199
22627096 AAAGGAACTC
* * ** * *
22627106 GTAAAAGTTTGAGAAGTTCGGAAGTTTTTCTAAGAACCAAGAGAGAAACAATTCTCATGTAAATA
1 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
22627171 AGTTTTTAATTCAAAGACACAAACTTTTTAAAAATGACAAACTATTTAGACCAAATTATGCGACT
66 AGTTTTTAATTCAAAGACACAAACTTTTTAAAAATGACAAACTATTTAGACAAAATGATGCAACT
** *
22627236 TCTTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATTACCTTGAATACATTAAGGTAC
131 TCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCACCTTGAATACATTAAGGTAC
22627301 CAAA
196 CAAA
* * * *
22627305 GTAAAAGTTTGACAAGTTTAGAAGTTCGTCCCAGAACCATGAGAGAAACAATTCTCACGTAAATG
1 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
*
22627370 AGTTTTTAATTCAAAGAC-CAAAACTTCTTTACAAAATGACAAACTATTTAGACAAAATGATTCA
66 AGTTTTTAATTCAAAGACAC-AAACTT-TTTA-AAAATGACAAACTATTTAGACAAAATGATGCA
* * * * * **
22627434 ATTTCCCGAGTATGGAATGTTCGGAAAATTGTTGGAAGGAATGGATCGTCTTGAATAC
128 ACTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCACCTTGAATAC
22627492 TTTTAAAGAA
Statistics
Matches: 160, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
198 1 0.01
199 79 0.49
200 4 0.03
201 76 0.47
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (199 bp):
GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTTAATTCAAAGACACAAACTTTTTAAAAATGACAAACTATTTAGACAAAATGATGCAACT
TCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCACCTTGAATACATTAAGGTAC
CAAA
Found at i:22627724 original size:169 final size:170
Alignment explanation
Indices: 22627458--22627776 Score: 446
Period size: 169 Copynumber: 1.9 Consensus size: 170
22627448 GAATGTTCGG
* * * *
22627458 AAAATTGTTGGAAGGAATGGATCGTCTTGAATACTTTTAAAGAACCGAAGTAATAAAGGATCTCA
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTT-AAGAACCGAAGTAATAAAAGAACTCA
** *
22627523 TAAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATATGT
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGCAAATATGT
*
22627588 TTTAAATTCAATGA-CAAAACTTGTGATGAGATTTTCTGAC
130 TTTAAATTCAAAGACCAAAACTTGTGATGAGATTTTCTGAC
* * *
22627628 AAAATTGCTCGAAGGAATGGATTGTCTT-AACTACTTTCT-AGAATCGAAGTTATAAAAGAACTC
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTT-TAAGAACCGAAGTAATAAAAGAACTC
* * * *
22627691 GTAAAAGTTTGACATGTTCGGAAGTTTGTCCAAGAACCAAGAGAAACAATTCTCATGCAAATATG
64 ATAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGCAAATATG
*
22627756 TTTTTAATTCAAAGACCAAAA
129 TTTTAAATTCAAAGACCAAAA
22627777 GTTGATAACA
Statistics
Matches: 130, Mismatches: 16, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
169 93 0.72
170 36 0.28
171 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (170 bp):
AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAGAACCGAAGTAATAAAAGAACTCAT
AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGCAAATATGTT
TTAAATTCAAAGACCAAAACTTGTGATGAGATTTTCTGAC
Found at i:22628438 original size:431 final size:430
Alignment explanation
Indices: 22627628--22631372 Score: 3897
Period size: 431 Copynumber: 8.8 Consensus size: 430
22627618 ATTTTCTGAC
* * *
22627628 AAAATTGCTCGAAGGAATGGATTGTCTT-AACTACTTTCTA-GAATCGAAGTTATAAAAGAACTC
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTT-AAGGAACCGAAGTTATAAAAGAACTC
* * * * *
22627691 GTAAAAGTTTGACATGTTCGGAAGTTTGTCCAAGAACCAAGAGAAACAATTCTCATGCAAATATG
64 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAG
** * * * *
22627756 TTTTTAATTCAAAGACCAAAAGTTGATAACAATATGACAAACTATTTAGACTAAACT-ATGCGAT
129 TTTTTAATTCAAAGACCAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGAT
* * * **
22627820 TTCCCGAGCATGGAATGCTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATTTTTTAAGGAA
193 TTCCCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
22627885 GCGAAGATATAAAAGAGCTCGCT-AAAGTTTGACAAGTACGGAAGTTCATCCAAGAACCATGAGA
258 CCGAAGTTATAAAAGAACTCG-TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
22627949 GAAACAAATCTTACATAAATAATGTTTTTAATTCAAAAACTAAAAGTTGTTTACAAAATAACAAA
322 GAAACAATTCTCACGTAAATAA-GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * ** * *
22628014 CTATTGAGACCAAATGATGCGTTTTCCAAAGCATTG-ATCATTCGT
386 CTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAAT-ATTCGG
* * * * *
22628059 AAAATTGCTCAAATGAATGGATCGTCTTGAATACTGTAAGGAATCGAAGTTATAAAAGAGCTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
**
22628124 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAATGATTCTCACGTAAATAAGTT
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
22628189 TTTAATTCAAAGACCACATCTTGTTTACATAATGACAAACTATTTAGACCGAATGATTCAATTTC
131 TTTAATTCAAAGACCAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * *
22628254 CCGAGCATGGAATGTTTGAAAAAATGCTCGAGGGAATGGATCATCTTGAATACTTTGAGGAACCG
196 CCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG
* * * *
22628319 AATTTCTAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAA
261 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
* * * *
22628384 CAATTCTCACGTAAATAAGTTTTTTAATTCAAACACCAAAAGTTGATAACAAAATGAAAAACTAT
326 CAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * **
22628449 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAG
390 TTAGACCAAATGATGCGATTTCCTGAGCATGGAATATTCGG
* * * * * * *
22628490 AAAATTGCTGGAAGAAATGGATCGTCTTTAAGACTATAAGGAACCAAAGTAATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * *
22628555 GAAAGTTTGACGAGTTCGAAAGTTCGTCTC-AGAAGCAATAGAGAAACAATTCTCACGTAAATAA
66 AAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAA-CCA-AGAGAAACAATTCTCACGTAAATAA
* * * *
22628619 ATTTTTAATGCAAAGACCAAAAT-TTGTTTACAAAATGTCAAACTATTTAGACCAAATGATGTGA
128 GTTTTTAATTCAAAGACC-AAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
**** * * * * * * *
22628683 TTTATTAAGTATGGAATGTTCGGAAAGTTGCTCAAAGGACTGGATCGTCTTGAATGCTTTAAGGA
192 TTTCCCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * ** * *
22628748 TCCGAAATTATAAAAGAACTCGTAAAAGTTTGATAAGTTTTGAAGTTCGTCTCGA-AACCAATAG
257 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAG
* * ** *
22628812 AGAAACAATTATCACGTAAATAAGTTTTTAATTTAAAGACCAAAACCTGTCTACAAAATGACAAA
321 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * * ** * **
22628877 CTATTTAAACCAAATTATTCGATTAACTGAGCATGGAATGTAGGG
386 CTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATATTCGG
* ** *
22628922 AAAATTGCTCGAAGG-A---A-----TTGAATACTTTAAGGAACTGAAGTTATAACGGAACTCAT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* *
22628978 AAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC--AAGAGAAACAATTCTCACGTAAATAAG
* * * *
22629043 TTTTTAATTCAAAGACACAAA-CTTTTTTACAAAATGACAAGCTATTTAAACCAAATGATGCAAT
129 TTTTTAATTCAAAGAC-CAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * * * *
22629107 TTTCTGAGCATGGAATG-TTCAGAAAATTGGTCGACGGAATGGATCGTCTTGAATTCTTTAAGGT
193 TTCCCGAGCATGGAATGTTTGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * *
22629171 ACC-----------A-AA---GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCCAGAACCAAGAAA
257 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * *
22629221 GAAACAATTTTCACGTAAATGAGTTCTTAATTCAAAGGCCAAAAGATGTTTACAAAATGACAAAC
322 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
* * * *
22629286 TATTTAGA-CAAACTGATTCAATTTCCTGAGCATGGAATGTTCGT
387 TATTTAGACCAAA-TGATGCGATTTCCTGAGCATGGAATATTCGG
* * * ** * * * *
22629330 AAAATT-TTTGAAGGTATCAATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAACTCG
* ** * *
22629394 AAAAAG--TGACAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAACAATCCTCACATAAATAAGT
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGT
** * * * *
22629457 TTTTAATTCAAAGACCAAAAGTTGATAACAAGATGACAAACTATTTAGACTAAACT-ATGCGATT
130 TTTTAATTCAAAGACCAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATT
* * *
22629521 TCCCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAAC
194 TCCCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
*
22629586 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGA
259 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
* * **
22629651 AACAATTCTTACATAAATAAAGTTTTTAATTCAAAAGATTAAAAAGTTGTTTACAAAATGACAAA
324 AACAATTCTCACGTAAAT-AAGTTTTTAATTC-AAAGA-CCAAAAGTTGTTTACAAAATGACAAA
* *
22629716 CTATTTGGACCAAATGATGCGATTT-CTAGAGCATGG-ATCATTCGT
386 CTATTTAGACCAAATGATGCGATTTCCT-GAGCATGGAAT-ATTCGG
* * * * * * * *
22629761 AAAATTTCTCAAAGCAATGGATCATCTTGAATAATGTAAGGAACCGAAGTTATAAAAGAGCTCAT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* *
22629826 AAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATGAGTT
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
22629891 TTTAATTCAAATACCAAATTTTGTTTGCAAAATGACAAACTATTTAGACCGAATGATTCAATTTC
131 TTTAATTCAAAGACCAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * ** * *
22629956 CCGAGTATGGAGTGTTTGAAAAATTGCTC-AAGGGAATAGATTATCTTGAATACTTTGAGGAATC
196 CCGAGCATGGAATGTTTGAAAAATTGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAACC
* * **
22630020 GAATTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAAAAAAGAGAGAA
260 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA
* * * *
22630085 ACAATTCTCACGTTAATAAGTTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTA
325 ACAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* *
22630150 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGG
389 TTTAGACCAAATGATGCGATTTCCTGAGCATGGAATATTCGG
* * * * *
22630192 AAAATTGCTCTAAGGAATGGACCGTCTTCAATAATTTAAGGAACCGAAGTTGTAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * *
22630257 GAAAGTTTGACAAGTTCGAAAGTTCGTCTC-AGAACCTATAGAGAAATAATTCTCACATAAATAA
66 AAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACC-A-AGAGAAACAATTCTCACGTAAATAA
* * * *
22630321 ATTTTTAATTCAAAAACCAAAAT-TTGTTTACAAAATGACAAACAATTTAGTCCAAATGATGCGA
128 GTTTTTAATTCAAAGACC-AAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
** * * * *
22630385 TTTCTTGTGCTTGGAATGTTT-AGAAAATTGCTCGAAGGAATGCATCGTCTTGAATGCTTTAAGG
192 TTTCCCGAGCATGGAATGTTTGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
22630449 ATCCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCTGAAGTTCGTCCCAA-AACCAATA
256 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAGAACCAAGA
** * *
22630513 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTTGAAGACAAAAACTTGTTTACAAAATGACAA
320 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * * * * *
22630578 ACTATTTAGACCAAATGATTCGATTAACC-AAGGATGAAATATTGGG
385 ACTATTTAGACCAAATGATGCGATT-TCCTGAGCATGGAATATTCGG
* * * * * * *
22630624 AAAACTACTTGAAGGAATGTATCGTCTTGAATACTTTAGGGAACCGAAGTTATAAAGGAACTTGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
**
22630689 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAATAAAGAGAGAAACAATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CCA-AGAGAAACAATTCTCACGTAAATAAG
* * * *
22630754 TTTTTAATTCAAAGACACAAACTTTTTTTTCCAAAATGACAAACTATTTAGACCAAATAATGCGA
129 TTTTTAATTCAAAGAC-CAAA-TCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * *
22630819 TTTCCTGAGCATGGAATGTTTGGAAAATTACTC-AACGGAATGGATCGCCATGAATACTTTAAGG
192 TTTCCCGAGCATGGAATGTTTGAAAAATTGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGG
* * * *
22630883 TACC-----------A-AA---GTAAAAGTTTGACAAGTTCGAAAGTTTGTCCCAGAACCAAGAG
256 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG
** *
22630933 AGAAACAATTCTCACGTAAA-AGAGTTTTTAATTCAAAGACCAAAACATCTTTACAAAATGACAA
321 AGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
** * * * * * *
22630997 ACTATTTAGAAAAAATGATTCAATTTCCTGAGCATGTAATGTTAAGA
385 ACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATATT-CGG
* * * * *
22631044 AAAATT-TTTGATGGAATGGATCGTCTTGAATACTTTTAAGGAACCGAAGTAATAAAGGAACTCG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAACTCG
* ** *
22631108 AAAAAGTTTGACAAGTTCTTAAGTTCATCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGT
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGT
* * * * * * *
22631173 TTTTGATTCAAATACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATAATTCAATTT
130 TTTTAATTCAAAGACCAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * *
22631238 ------C-TCG-A-----G-AAAATTGCTCGAAGGAATGCATCGACTTGAATACTTTAAGGAACC
195 CCCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* * * * * * *
22631289 AAAATTATAATAGAAGTAGTAAAAGTTTGACAAGTTCGGAAGTTCTTCCCAA-AACCAATAGAGA
260 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAGAACCAAGAGAGA
*
22631353 AACAATTCTCACATAAATAA
324 AACAATTCTCACGTAAATAA
22631373 AGACCAAAAC
Statistics
Matches: 2767, Mismatches: 448, Indels: 212
0.81 0.13 0.06
Matches are distributed among these distances:
402 37 0.01
403 3 0.00
407 12 0.00
408 130 0.05
409 2 0.00
410 1 0.00
411 3 0.00
412 5 0.00
413 130 0.05
414 5 0.00
415 25 0.01
416 47 0.02
417 87 0.03
418 50 0.02
419 148 0.05
420 64 0.02
422 5 0.00
423 187 0.07
424 3 0.00
425 2 0.00
428 58 0.02
429 11 0.00
430 12 0.00
431 674 0.24
432 322 0.12
433 640 0.23
434 104 0.04
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (430 bp):
AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTT
TTTAATTCAAAGACCAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
CCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG
AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
TAGACCAAATGATGCGATTTCCTGAGCATGGAATATTCGG
Found at i:22628729 original size:216 final size:216
Alignment explanation
Indices: 22627628--22631372 Score: 3909
Period size: 216 Copynumber: 17.6 Consensus size: 216
22627618 ATTTTCTGAC
* * *
22627628 AAAATTGCTCGAAGGAATGGATTGTCTT-AACTACTTTCTA-GAATCGAAGTTATAAAAGAACTC
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTT-AAGGAACCGAAGTTATAAAAGAACTC
* * * *
22627691 GTAAAAGTTTGACATGTTCGGAAGTTTGTCCAAGAACC-A-AGAGAAACAATTCTCATGCAAATA
64 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
22627754 TGTTTTTAATTCAAAGACCAAAAGTTGATAACAATATGACAAACTATTTAGACTAAACT-ATGCG
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCG
* *
22627818 ATTTCCCGAGCATGGAATGCTCGG
193 ATTTCCTGAGCATGGAATGTTCGG
** * * *
22627842 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTTTTTAAGGAAGCGAAGATATAAAAGAGCTCGC
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG-
* * * * * *
22627907 T-AAAGTTTGACAAGTACGGAAGTTCATCCAAGAACCATGAGAGAAACAAATCTTACATAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
22627971 TGTTTTTAATTCAAAAACTAAAAGTTGTTTACAAAATAACAAACTATTGAGACCAAATGATGCGT
130 -GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
** * * *
22628036 TTTCCAAAGCATTG-ATCATTCGT
194 TTTCCTGAGCATGGAAT-GTTCGG
* * * * *
22628059 AAAATTGCTCAAATGAATGGATCGTCTTGAATACTGTAAGGAATCGAAGTTATAAAAGAGCTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
**
22628124 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-A-AGAGAAATGATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* ** * * * *
22628187 TTTTTAATTCAAAGACCACATCTTGTTTACATAATGACAAACTATTTAGACCGAATGATTCAATT
131 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * *
22628252 TCCCGAGCATGGAATGTTTGA
196 TCCTGAGCATGGAATGTTCGG
* * * * * *
22628273 AAAAATGCTCGAGGGAATGGATCATCTTGAATACTTTGAGGAACCGAATTTCTAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* *
22628338 AAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
22628403 TTTTTTAATTCAAACACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGAT
131 -TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* **
22628468 TTCCCGAGCATGGAATGTTTAG
195 TTCCTGAGCATGGAATGTTCGG
* * * * * * *
22628490 AAAATTGCTGGAAGAAATGGATCGTCTTTAAGACTATAAGGAACCAAAGTAATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * * *
22628555 GAAAGTTTGACGAGTTCGAAAGTTCGTCTC-AGAAGCAATAGAGAAACAATTCTCACGTAAATAA
66 AAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
22628619 ATTTTTAATGCAAAGACCAAAATTTGTTTACAAAATGTCAAACTATTTAGACCAAATGATGTGAT
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
** * *
22628684 TTATTAAGTATGGAATGTTCGG
195 TTCCTGAGCATGGAATGTTCGG
* * * * * *
22628706 AAAGTTGCTCAAAGGACTGGATCGTCTTGAATGCTTTAAGGATCCGAAATTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* ** * * *
22628771 AAAAGTTTGATAAGTTTTGAAGTTCGTCTCGA-AACCAATAGAGAAACAATTATCACGTAAATAA
66 AAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* ** * * * *
22628835 GTTTTTAATTTAAAGACCAAAACCTGTCTACAAAATGACAAACTATTTAAACCAAATTATTCGAT
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
** **
22628900 TAACTGAGCATGGAATGTAGGG
195 TTCCTGAGCATGGAATGTTCGG
* ** *
22628922 AAAATTGCTCGAAGG-A---A-----TTGAATACTTTAAGGAACTGAAGTTATAACGGAACTCAT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * *
22628978 AAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
22629043 TTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGACAAGCTATTTAAACCAAATGATGCAAT
131 TTTTTAATTCAAAGACCA-AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* *
22629107 TTTCTGAGCATGGAATGTTCAG
195 TTCCTGAGCATGGAATGTTCGG
* * * *
22629129 AAAATTGGTCGACGGAATGGATCGTCTTGAATTCTTTAAGGTACC-----------A-AA---GT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * * *
22629179 AAAAGTTTGACAAGTTCGAAAGTTCGTCCCAGAACCAAGAAAGAAACAATTTTCACGTAAATGAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
22629244 TTCTTAATTCAAAGGCCAAAAGATGTTTACAAAATGACAAACTATTTAGA-CAAACTGATTCAAT
131 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGAT
*
22629308 TTCCTGAGCATGGAATGTTCGT
195 TTCCTGAGCATGGAATGTTCGG
* * * ** * * * *
22629330 AAAATT-TTTGAAGGTATCAATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAACTCG
* ** * *
22629394 AAAAAG--TGACAAGTTCTTAAGTTCGTCCAAGAACC-A-AGAGAAACAATCCTCACATAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
22629455 GTTTTTAATTCAAAGACCAAAAGTTGATAACAAGATGACAAACTATTTAGACTAAACT-ATGCGA
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGA
* *
22629519 TTTCCCGAGCATGGAATGTTCGA
194 TTTCCTGAGCATGGAATGTTCGG
* *
22629542 AAAATTACTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * *
22629607 AAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAA
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-AA
** *
22629672 GTTTTTAATTCAAAAGATTAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCG
130 GTTTTTAATTC-AAAGA-CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* *
22629737 ATTT-CTAGAGCATGG-ATCATTCGT
193 ATTTCCT-GAGCATGGAAT-GTTCGG
* * * * * * * *
22629761 AAAATTTCTCAAAGCAATGGATCATCTTGAATAATGTAAGGAACCGAAGTTATAAAAGAGCTCAT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* *
22629826 AAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATGAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* ** * * * *
22629889 TTTTTAATTCAAATACCAAATTTTGTTTGCAAAATGACAAACTATTTAGACCGAATGATTCAATT
131 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * *
22629954 TCCCGAGTATGGAGTGTTTGA
196 TCCTGAGCATGGAATGTTCGG
* ** * * *
22629975 AAAATTGCTC-AAGGGAATAGATTATCTTGAATACTTTGAGGAATCGAATTTATAAAAGAACTCG
1 AAAATTGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* ** *
22630039 TAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAAAAAAGAGAGAAACAATTCTCACGTTAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
22630104 GTTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGA
130 G-TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
22630169 TTTCCCGAGCATGGAATGTTCGG
194 TTTCCTGAGCATGGAATGTTCGG
* * * * *
22630192 AAAATTGCTCTAAGGAATGGACCGTCTTCAATAATTTAAGGAACCGAAGTTGTAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * * * *
22630257 GAAAGTTTGACAAGTTCGAAAGTTCGTCTC-AGAACCTATAGAGAAATAATTCTCACATAAATAA
66 AAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
22630321 ATTTTTAATTCAAAAACCAAAATTTGTTTACAAAATGACAAACAATTTAGTCCAAATGATGCGAT
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * **
22630386 TTCTTGTGCTTGGAATGTTTAG
195 TTCCTGAGCATGGAATGTTCGG
* * *
22630408 AAAATTGCTCGAAGGAATGCATCGTCTTGAATGCTTTAAGGATCCGAAGTTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* *
22630473 AAAAGTTTGACAAGTTCTGAAGTTCGTCCCAA-AACCAATAGAGAAACAATTCTCACGTAAATAA
66 AAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
** * * *
22630537 GTTTTTAATTTGAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGAT
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * * *
22630602 TAACC-AAGGATGAAATATTGGG
195 T-TCCTGAGCATGGAATGTTCGG
* * * * * * *
22630624 AAAACTACTTGAAGGAATGTATCGTCTTGAATACTTTAGGGAACCGAAGTTATAAAGGAACTTGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
**
22630689 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAATAAAGAGAGAAACAATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
** * * *
22630754 TTTTTAATTCAAAGACACAAACTTTTTTTTCCAAAATGACAAACTATTTAGACCAAATAATGCGA
131 TTTTTAATTCAAAGAC-CAAA-AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
22630819 TTTCCTGAGCATGGAATGTTTGG
194 TTTCCTGAGCATGGAATGTTCGG
* * * *
22630842 AAAATTACTC-AACGGAATGGATCGCCATGAATACTTTAAGGTACC-----------A-AA---G
1 AAAATTGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * *
22630891 TAAAAGTTTGACAAGTTCGAAAGTTTGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAA-AG
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-
** * ** * *
22630955 AGTTTTTAATTCAAAGACCAAAACATCTTTACAAAATGACAAACTATTTAGAAAAAATGATTCAA
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * *
22631020 TTTCCTGAGCATGTAATGTTAAGA
194 TTTCCTGAGCATGGAATGTT-CGG
* * * * *
22631044 AAAATT-TTTGATGGAATGGATCGTCTTGAATACTTTTAAGGAACCGAAGTAATAAAGGAACTCG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAACTCG
* ** *
22631108 AAAAAGTTTGACAAGTTCTTAAGTTCATCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * * *
22631171 GTTTTTGATTCAAATACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATAATTCAAT
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
22631236 TT-CT---C---G-A------G
195 TTCCTGAGCATGGAATGTTCGG
* * * * * * *
22631244 AAAATTGCTCGAAGGAATGCATCGACTTGAATACTTTAAGGAACCAAAATTATAATAGAAGTAGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * *
22631309 AAAAGTTTGACAAGTTCGGAAGTTCTTCCCAA-AACCAATAGAGAAACAATTCTCACATAAATAA
66 AAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
22631373 AGACCAAAAC
Statistics
Matches: 2936, Mismatches: 499, Indels: 204
0.81 0.14 0.06
Matches are distributed among these distances:
200 81 0.03
201 240 0.08
202 49 0.02
203 76 0.03
204 2 0.00
206 6 0.00
207 172 0.06
208 1 0.00
211 2 0.00
212 128 0.04
213 31 0.01
214 428 0.15
215 120 0.04
216 764 0.26
217 590 0.20
218 100 0.03
219 146 0.05
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
TCCTGAGCATGGAATGTTCGG
Found at i:22633567 original size:214 final size:214
Alignment explanation
Indices: 22632857--22634554 Score: 1893
Period size: 214 Copynumber: 7.9 Consensus size: 214
22632847 GGCTGTATCA
* ** * * * *
22632857 GAATGTTC-AGAAAATTGCTCGAAGGAATGAATTATCTTGAATA-GTTAAAGAATCAAAGTTATA
1 GAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
* ** *
22632920 AAGGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCA-AGAGAAACAGTTCTCA
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGAGAGAAACAATTCTCA
* * * * * * * *
22632984 CATCAATAAGTTTTTAATTCATAGACCAAAAGTTGATAACAAGATGACAAACTATTTAGACTAAA
130 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
*
22633049 CT-ATGCGATTTCCCGAGCATG
195 -TGATTCGATTT-CCGAGCATG
** * * *
22633070 GAATGTTCGAAAAATTATTCGAAGGAATCGATCGTCTTGAATTCTTTAAGGAATCGAAGTTATAA
1 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * *
22633135 AAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGTGAAACAATTCTTA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-AGAGAGAAACAATTCTCA
* * * *
22633200 CATAAATAAAGTTTTTAATTCAAAAGACTAAAAGTTGTTTACAAAATGACAAACTATTTGGACCA
130 CGTAAAT-AAGTTTTTAATTC-AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* *
22633265 AATGATGCGATTTCTAGAGCATG
193 AATGATTCGATTTC-CGAGCATG
* * * * * * * *
22633288 G-ATCGTTC-ATCAAATTGCTCAAAGCAATGGATCATCTTGAATAATGTAAGGAATCAAAGTTAT
1 GAAT-GTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* *
22633351 AAAAGAACTCGTAAAAGTTTGACAGGTTCGGAAGTTCATCCAAGAACCA-AGAGAAACAATTCTC
64 AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGAGAGAAACAATTCTC
* *
22633415 ACGTAAATAAGTTTTTAATTCAAATACCAAATCTTGTTTACAAAATGACAAACTATTTAGACCAA
129 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * *
22633480 AAGATTCAATTTCCAAAACATG
194 ATGATTCGATTTCC-GAGCATG
* * * * * * * *
22633502 GAATGTTTGAAAAATTGCTCGAGGGAATGGATCATTTTGAATACTTTGAGGAGCTGAATTTATAA
1 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * *
22633567 AAGAACTCGTAAAAGTTTAACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-AGAGAGAAACAATTCTCA
* * * * * * *
22633632 CGTAAATATGTTTTTTAATTCAAACACCAAAAGTTGATAACAAAATGAAAAACTATTTAAACCAA
130 CGTAAATAAG-TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* *
22633697 ATGATCCGATTTATCGAGCATG
194 ATGATTCGATTT-CCGAGCATG
* * * *
22633719 GAATGTTCGGAAAATTGCTCGAAGGAGTGGATCATCTTCAATACTTTAAGGAACCGAAGTTATAA
1 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * * *
22633784 AAGAACTTGTGAAAGTTTGACAAGTTCGAAAGTTCGTCTC-AGAACCAATAGAGAAACATTTCTC
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACC-AGAGAGAAACAATTCTC
* * *
22633848 ACGTAAATAAATTTTTAATTCAAAGACCAAAA-TTTTTTACAAAATGACAAACTATTTAAACCAA
129 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* ** *
22633912 ATGATGT-GATTTCTTGTCCAAG
194 ATGAT-TCGATTTC-CGAGCATG
* *
22633934 GAATGTTCG-AAAATTGCTCGAAGGAATGCATCGTCTTGAATGA-TTTAAGGATCCGAAGTTATA
1 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT-ACTTTAAGGAACCGAAGTTATA
* *
22633997 AAAGAACTCGTAAAAGTTTGACAAGTTCTGAAGTTCGTCCCAA-AACCAATAGAGAAACAATTCT
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAGAACC-AGAGAGAAACAATTCT
* * * *
22634061 CACGTAAATAAGTTTTTAATTTAAAGACCAAAACCTGTGTACAAAATGGCAAACTATTTAGACCA
128 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
*
22634126 AATGATTCGATTAACCGAGCATG
193 AATGATTCGATT-TCCGAGCATG
* * * * *
22634149 GAATGTTGGGAAAACTGCTTGAAGGAATGTATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
1 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * * *
22634214 AGGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTTTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC-CAGAGAGAAACAATTCTCA
* * *
22634279 AGTAAATGAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGA-CAAA
130 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
*
22634343 CTGATTCAATTTCCCGAGCATG
195 -TGATTCGATTT-CCGAGCATG
* ** ** * * *
22634365 GAATGTTTG-GTAATTTTTTGAAGGAATGGATCGTCTTGAATACTTTTAAAGAACCGAAGTAATA
1 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTTATA
* * ** *** *
22634429 AAGGATCTCAAAAAAG--TGACAAGTTCTTTAGTTCGTCCAAGAACCA-AGAGAAACAATTCACA
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGAGAGAAACAATTCTCA
* *
22634491 CGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAA
130 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
22634555 TCGAGGAATA
Statistics
Matches: 1270, Mismatches: 181, Indels: 68
0.84 0.12 0.04
Matches are distributed among these distances:
212 69 0.05
213 38 0.03
214 363 0.29
215 157 0.12
216 298 0.23
217 198 0.16
218 147 0.12
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (214 bp):
GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGAGAGAAACAATTCTCAC
GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAAT
GATTCGATTTCCGAGCATG
Found at i:22633889 original size:432 final size:428
Alignment explanation
Indices: 22632857--22634554 Score: 1970
Period size: 431 Copynumber: 3.9 Consensus size: 428
22632847 GGCTGTATCA
* * * * *
22632857 GAATGTTCAGAAAATTGCTCGAAGGAATGAATTATCTTGAATA-GTTAAAGAATCAAAGTTATAA
1 GAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAA
* * * *
22632921 AGGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAAACAGTTCTCACA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAACATTTCTCACG
* * * * * * *
22632986 TCAATAAGTTTTTAATTCATAGACCAAAAGTTGATAACAAGATGACAAACTATTTAGACTAAACT
131 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-T
* * ** * *
22633051 -ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTATTCGAAGGAATCGATCGTCTTGAATTCT
195 GATTCAATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
*
22633115 TTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTC-GAAAGTTCGTCCAAGAA
259 TTAAGG-ACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCTG-AAGTTCGTCCAAGAA
* * * * *
22633179 CCAAGAGTGAAACAATTCTTACATAAATAAAGTTTTTAATTCAAAAGACTAAAAGTTGTTTACAA
322 CCAAGAGAGAAACAATTCTCACGTAAAT-AAGTTTTTAATTC-AAAGACCAAAACTTGTTTACAA
* * * *
22633244 AATGACAAACTATTTGGACCAAATGATGCGATTTCTAGAGCATG
385 AATGACAAACTATTTAGACCAAATGATCCGATTTATCGAGCATG
** * * * * *
22633288 G-ATCGTTCATCAAATTGCTCAAAGCAATGGATCATCTTGAATAATGTAAGGAATCAAAGTTATA
1 GAAT-GTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATA
* * * *
22633352 AAAGAACTCGTAAAAGTTTGACAGGTTCGGAAGTTCATCCAAGAACCAAGAGAAACAATTCTCAC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAACATTTCTCAC
* * *
22633417 GTAAATAAGTTTTTAATTCAAATACCAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAAA
130 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAAT
** * * * * *
22633482 GATTCAATTTCCAAAACATGGAATGTTTGAAAAATTGCTCGAGGGAATGGATCATTTTGAATACT
195 GATTCAATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
* * * * * *
22633547 TTGAGGAGCTGAATTTATAAAAGAACTCGTAAAAGTTTAACAAGTT-TGGAAGTTCATCCAAGAA
259 TTAAGGA-CCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCT-GAAGTTCGTCCAAGAA
* * * * *
22633611 CCAAGAGAGAAACAATTCTCACGTAAATATGTTTTTTAATTCAAACACCAAAAGTTGATAACAAA
322 CCAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* *
22633676 ATGAAAAACTATTTAAACCAAATGATCCGATTTATCGAGCATG
386 ATGACAAACTATTTAGACCAAATGATCCGATTTATCGAGCATG
* * * *
22633719 GAATGTTCGGAAAATTGCTCGAAGGAGTGGATCATCTTCAATACTTTAAGGAACCGAAGTTATAA
1 GAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAA
* *
22633784 AAGAACTTGTGAAAGTTTGACAAGTTCGAAAGTTCGTCTC-AGAACCAATAGAGAAACATTTCTC
66 AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTC-CAAGAACC-A-AGAGAAACATTTCTC
* * *
22633848 ACGTAAATAAATTTTTAATTCAAAGACCAAAA-TTTTTTACAAAATGACAAACTATTTAAACCAA
128 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* ** ** * *
22633912 ATGATGT-GATTTCTTGTCCAAGGAATGTTCGAAAATTGCTCGAAGGAATGCATCGTCTTGAATG
193 ATGAT-TCAATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAAT-
*
22633976 A-TTTAAGGATCCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCTGAAGTTCGTCCCAA
256 ACTTTAAGGA-CCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCTGAAGTTCGT-CCAA
* * * *
22634040 -AACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACCTGTGTACA
319 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
* * * *
22634104 AAATGGCAAACTATTTAGACCAAATGATTCGATTAACCGAGCATG
384 AAATGACAAACTATTTAGACCAAATGATCCGATTTATCGAGCATG
** * * * * *
22634149 GAATGTTGGGAAAACTGCTTGAAGGAATGTATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
1 GAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAA
* * * * *
22634214 AGGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTT-TC
66 AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAAC-CA-AGAGAAAC-ATTTCTC
* * *
22634278 AAGTAAATGAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGA-CAA
128 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* ** ** *
22634342 ACTGATTCAATTTCCCGAGCATGGAATGTTTGGTAATTTTTTGAAGGAATGGATCGTCTTGAATA
193 A-TGATTCAATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* * * * * **
22634407 CTTTTAAAGAACCGAAGTAATAAAGGATCTCAAAAAAG--TGACAAGTTCTTTAGTTCGTCCAAG
257 C-TTT-AAGGACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCTGAAGTTCGTCCAAG
* * *
22634470 AACC-A-AGAGAAACAATTCACACGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTAGAA
320 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
22634533 AATGACAAACTATTTAGACCAA
385 AATGACAAACTATTTAGACCAA
22634555 TCGAGGAATA
Statistics
Matches: 1078, Mismatches: 164, Indels: 53
0.83 0.13 0.04
Matches are distributed among these distances:
428 74 0.07
429 6 0.01
430 228 0.21
431 368 0.34
432 353 0.33
433 49 0.05
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (428 bp):
GAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAA
AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAACATTTCTCACG
TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
ATTCAATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
AAGGACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAA
GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAC
AAACTATTTAGACCAAATGATCCGATTTATCGAGCATG
Found at i:22637396 original size:12 final size:13
Alignment explanation
Indices: 22637379--22637407 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
22637369 GGAATTTCTT
22637379 TTTTGAA-TTTTG
1 TTTTGAAGTTTTG
22637391 TTTTGAAGTTTTG
1 TTTTGAAGTTTTG
22637404 TTTT
1 TTTT
22637408 CAAATCGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.14, C:0.00, G:0.17, T:0.69
Consensus pattern (13 bp):
TTTTGAAGTTTTG
Found at i:22638028 original size:79 final size:79
Alignment explanation
Indices: 22637920--22638075 Score: 260
Period size: 79 Copynumber: 2.0 Consensus size: 79
22637910 ACTAATTTCA
* *
22637920 TTTTAACTCTTGTAGGGAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGTTAAAAAG
1 TTTTAACTCTTGTAGGGAAACTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
*
22637985 GCTTGGCAATTTCGT
66 GCATGGC-ATTTCGT
*
22638000 TTTTAACTCTTGTA-GGAAACTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTGAAAAG
1 TTTTAACTCTTGTAGGGAAACTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
22638064 GCATGGCATTTC
66 GCATGGCATTTC
22638076 TCCTTAATGA
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
78 5 0.07
79 53 0.74
80 14 0.19
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.37
Consensus pattern (79 bp):
TTTTAACTCTTGTAGGGAAACTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
GCATGGCATTTCGT
Found at i:22638606 original size:47 final size:47
Alignment explanation
Indices: 22638519--22638695 Score: 291
Period size: 47 Copynumber: 3.7 Consensus size: 47
22638509 CAAGGCATTT
*
22638519 AACAAAGATGCATTTAACAAACAAAACAGTTAATAATGCAGATTACTA
1 AACAAAGATGCATTTAA-AAACAAAACACTTAATAATGCAGATTACTA
*
22638567 AACAAAGATGAATTTAAAAACAAAACACTTAATAATGCAGATTACTA
1 AACAAAGATGCATTTAAAAACAAAACACTTAATAATGCAGATTACTA
*
22638614 AACAAAGATGCATTTAAAAACAAAACACTTAATAATGCAGATTATTA
1 AACAAAGATGCATTTAAAAACAAAACACTTAATAATGCAGATTACTA
*
22638661 AACAAAGATGCATTTAACAAAAAAAAACACTTAAT
1 AACAAAGATGCATTT-A-AAAACAAAACACTTAAT
22638696 GAAGCATAAA
Statistics
Matches: 122, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
47 89 0.73
48 17 0.14
49 16 0.13
ACGTcount: A:0.55, C:0.14, G:0.08, T:0.23
Consensus pattern (47 bp):
AACAAAGATGCATTTAAAAACAAAACACTTAATAATGCAGATTACTA
Found at i:22639884 original size:432 final size:426
Alignment explanation
Indices: 22639123--22640301 Score: 1360
Period size: 432 Copynumber: 2.8 Consensus size: 426
22639113 ATTTCTCGAG
* *
22639123 AAAATTGCTCGAAGGAATGCATCGACTTGAATACTTTAAGGAACCGAAATTATAATAGAACT-AG
1 AAAATTGCTCGAAGGAATGCAT-GTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCA-
* * * *
22639187 TAAAAGTTTGACAAGTTCGGAAGTTCTTCCCAGAACCAATAGAGAAACAATTC-T-C--ACAT-A
64 TAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAA
** *
22639247 ------AA-T-AAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATAATTCGAT
129 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGAT
* * * *
22639304 TCCCCGAGTATGGAATGTTCAGAAAATTGCTCGAAGGAATGAATCATCTTGAATAGTTAAAGGAA
194 T-TCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCATCTTGAATAATT-AAGGAA
* * * * * * * *
22639369 CCAAAGTTATATAGGAACTTGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAA
256 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCTAGAACCAAGAGAA
* ** *
22639434 ACAATTCTCACATAAATAAGTTTTTAATTCATAGAACAAAAGTTGATAACAATATGACAAACTAT
321 ACAATTCTCACATAAATAAGTTTTTAATTCAAAGAACAAAACCTGATAACAAAATGACAAACTAT
* * *
22639499 TTAGACTAAACT-ATGCGATTTCCTAAGCATGGAATGTTCAA
386 TTAGACCAAA-TGATGCAATTTCCCAAGCATGGAATGTTCAA
* * *
22639540 AAAATTGCTCGAAGGAATGGATTGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCAT
1 AAAATTGCTCGAAGGAATGCA-TGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCAT
* * *
22639605 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACATTTCTTACGTAAATAAA
65 AAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTAAAT-AA
* *
22639670 GTTTTTAATTCAAAAGACTAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
129 GTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGA
* * * * * *
22639735 TTTCTAGAGCATGG-GTCATTCGTAAAATTTCTCAAAGCAATGGATCATCTTGAATAATGTAAGG
193 TTTC-CGAGCATGGAAT-GTTCG-AAAATTGCTCGAAGGAATGGATCATCTTGAATAAT-TAAGG
*
22639799 AACCGAAGTTATAAAAGACCTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCTAGAACCAAGAG
254 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCTAGAACCAAGAG
* * * * * * *
22639864 AAACAATTCTCACGTAAATAAGTTTTTAATTTAAATACCAAATCCTGTTTACAAAATGACAAACT
319 AAACAATTCTCACATAAATAAGTTTTTAATTCAAAGAACAAAACCTGATAACAAAATGACAAACT
* * **
22639929 ATTTAGACCAAATGATTCAATTTCCCGAGCATGGAATGTTTGA
384 ATTTAGACCAAATGATGCAATTTCCCAAGCATGGAATGTTCAA
* * * *
22639972 AAAATTGCTC-AAGGGAA--CA--TCTTGAATACTTTGA-GAAGCTGAATTTATAAAAGAACTCG
1 AAAATTGCTCGAA-GGAATGCATGTCTTGAATACTTTAAGGAA-CCGAAATTATAAAAGAACTCA
* * *
22640031 TAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAT
64 TAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAA
* * * *
22640096 GTTTTTTAATTCAAACACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATAATGCGA
129 G-TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGA
* * *
22640161 TTTACCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTCAATACTTTAAGGA
193 TTT-CCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCATCTTGAATA-ATTAAGGA
* * *
22640226 ACCGAAATTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCAT-CTCAGAACCAATAG
255 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCT-AGAACC-A-AG
22640290 AGAAACAATTCT
317 AGAAACAATTCT
22640302 TGTCCATGGA
Statistics
Matches: 646, Mismatches: 84, Indels: 53
0.83 0.11 0.07
Matches are distributed among these distances:
417 103 0.16
418 3 0.00
419 1 0.00
421 3 0.00
423 1 0.00
425 2 0.00
426 152 0.24
427 104 0.16
428 14 0.02
429 2 0.00
430 2 0.00
431 6 0.01
432 252 0.39
433 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (426 bp):
AAAATTGCTCGAAGGAATGCATGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCATA
AAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGT
TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTT
CCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCATCTTGAATAATTAAGGAACCGAA
GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCTAGAACCAAGAGAAACAAT
TCTCACATAAATAAGTTTTTAATTCAAAGAACAAAACCTGATAACAAAATGACAAACTATTTAGA
CCAAATGATGCAATTTCCCAAGCATGGAATGTTCAA
Found at i:22640421 original size:136 final size:136
Alignment explanation
Indices: 22640170--22640437 Score: 430
Period size: 136 Copynumber: 2.0 Consensus size: 136
22640160 ATTTACCGAG
*
22640170 CATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTCAATACTTTAAGGAACCGAAATT
1 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTCAATACTTTAAGGAACCGAAATT
* * * *
22640235 ATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCATCTCAGAACCAATAGAGAAACAATT
66 ATAAAAGAACTCGTAAAAGTCTGACAAGTTTGAAAGTTCATCCCAAAACCAATAGAGAAACAATT
22640300 CTTGTC
131 CTTGTC
* * *
22640306 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGATCCGAAGTT
1 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTCAATACTTTAAGGAACCGAAATT
* *
22640371 ATAAAAGAACTCGTAAAAGTCTGACAAGTTCTG-CATTTCATCCCAAAACCAATAGAGAAACAAT
66 ATAAAAGAACTCGTAAAAGTCTGACAAGTT-TGAAAGTTCATCCCAAAACCAATAGAGAAACAAT
22640435 TCT
130 TCT
22640438 CACGTAAATA
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
136 119 0.98
137 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (136 bp):
CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTCAATACTTTAAGGAACCGAAATT
ATAAAAGAACTCGTAAAAGTCTGACAAGTTTGAAAGTTCATCCCAAAACCAATAGAGAAACAATT
CTTGTC
Found at i:22640637 original size:352 final size:348
Alignment explanation
Indices: 22639958--22640653 Score: 938
Period size: 352 Copynumber: 2.0 Consensus size: 348
22639948 ATTTCCCGAG
* * * *
22639958 CATGGAATGTTTGAAAAATTGCTCAAGGGAACATCTTGAATACTTTGAGAAGCTGAATTTATAAA
1 CATGGAATGTTCGAAAAATTGCTCAAGGGAACATCTTGAATACTTTAAGAAGCCGAAGTTATAAA
*
22640023 AGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAC
66 AGAACTCGTAAAAGTCTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAC
* **
22640088 GTAAATATGTTTTTTAATTCAAACACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAA
131 GTAAATAAGTTTTTTAATTCAAACACCAAAACCTGATAACAAAATGAAAAACTATTTAGACCAAA
*
22640153 TAATGCGATTTACCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTCAATAC
196 TAATGCGATTAACCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTCAATAC
* * *
22640218 TTTAAGGAACCGAAATTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCATCTCAGAA
261 TCTAAGGAACCGAAATTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCTCAGAA
22640283 CCAATAGAGAAACAATTCTTGTC
326 CCAATAGAGAAACAATTCTTGTC
* * * *
22640306 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGATCCGAAGTT
1 CATGGAATGTTCGAAAAATTGCTC-AA-G---GGAACATCTTGAATACTTTAAGAAGCCGAAGTT
* * *
22640371 ATAAAAGAACTCGTAAAAGTCTGACAAGTTCT-GCATTTCATCCCAA-AACCAATAGAGAAACAA
61 ATAAAAGAACTCGTAAAAGTCTGACAAGTT-TGGAAGTTCAT-CCAAGAACCAAGAGAGAAACAA
* * * * *
22640434 TTCTCACGTAAATAAG-TTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTA
124 TTCTCACGTAAATAAGTTTTTTAATTCAAACACCAAAACCTGATAACAAAATGAAAAACTATTTA
* * * *
22640498 GACCAAATGATTCGATTAACTGAGCATGGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCT
189 GACCAAATAATGCGATTAACCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCT
* ** * *
22640563 TGAATACTCTAAGGAACC-AAAGTTATAATGGAACTCGTAAAAGCTTT-ACTAGTTCGGAAGTT-
254 TCAATACTCTAAGGAACCGAAA-TTATAAAAGAACTCGTAAAAG-TTTGACAAGTTCGAAAGTTC
*
22640625 AGTC-CAAGAACCAATAGAGAAATAATTCT
317 A-TCTC-AGAACCAATAGAGAAACAATTCT
22640654 CACGTAAATA
Statistics
Matches: 303, Mismatches: 34, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
348 23 0.08
349 2 0.01
350 1 0.00
351 5 0.02
352 171 0.56
353 96 0.32
354 5 0.02
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (348 bp):
CATGGAATGTTCGAAAAATTGCTCAAGGGAACATCTTGAATACTTTAAGAAGCCGAAGTTATAAA
AGAACTCGTAAAAGTCTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAC
GTAAATAAGTTTTTTAATTCAAACACCAAAACCTGATAACAAAATGAAAAACTATTTAGACCAAA
TAATGCGATTAACCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTCAATAC
TCTAAGGAACCGAAATTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCTCAGAA
CCAATAGAGAAACAATTCTTGTC
Found at i:22640697 original size:216 final size:214
Alignment explanation
Indices: 22640306--22642150 Score: 1823
Period size: 216 Copynumber: 8.8 Consensus size: 214
22640296 AATTCTTGTC
* * * *
22640306 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGATCCGAAGTT
1 CATGGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTT
* * * * * *
22640371 ATAAAAGAACTCGTAAAAGTCTGACAAGTTCTGCATTTCATCCCAA-AACCAATAGAGAAACAAT
66 ATAAAGGAACTCGTAAAAGT-TTACAAGTTCGGAAGTTCGT-CCAAGAACCAATAGAGAAACAAT
* *
22640435 TCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGA
129 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA
22640500 CCAAATGATTCGATTAACTGAG
194 CCAAATGATTCGATT-ACTGAG
*
22640522 CATGGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAACCAAAGTT
1 CATGGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTT
* * * *
22640587 ATAATGGAACTCGTAAAAGCTTTACTAGTTCGGAAGTTAGTCCAAGAACCAATAGAGAAATAATT
66 ATAAAGGAACTCGTAAAAG-TTTACAAGTTCGGAAGTTCGTCCAAGAACCAATAGAGAAACAATT
* *
22640652 CTCACGTAAATAAGTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGACAAACTATTTAGG
130 CTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACAAACTATTTAGA
* * *
22640716 CCAAATGATACGATTTCCTAAG
194 CCAAATGATTCGA-TTACTGAG
** * * * *
22640738 CATGGAATGTTCAGAAAATTGCTTGATA-GAATGGATCGTCTTGATTAATTTAAGGTACCAAAG-
1 CATGGAATGTTGGGAAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGT
* * * *
22640801 --T-AA--AA---GT-----TTGACAAGTACGGAAGTTTGTTCC-AGAACCAAGAGAGAAACAAT
65 TATAAAGGAACTCGTAAAAGTTTACAAGTTCGGAAGTTCG-TCCAAGAACCAATAGAGAAACAAT
* * * *
22640852 TCCCACGTAAATGAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTAATTAGA
129 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA
* *
22640917 -CAAACTGATTCAATTTCTTGAG
194 CCAAA-TGATTCGATTAC-TGAG
* * * *
22640939 CATGGAATGTTTGGAAAAATT--TTGAAGAAATGGATCGTCTTGAATACATTTAAGGAACCGAAG
1 CATGGAATG-TTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCAAAG
* * * ** *
22641002 TAATAAAGGATCTCGAAAAAGTTTGACAAGTTCTTAAGTTCGTCAAAGAACC-A-AGAGAAACAA
64 TTATAAAGGAACTCGTAAAAGTTT-ACAAGTTCGGAAGTTCGTCCAAGAACCAATAGAGAAACAA
* * ** *
22641065 TTCCCACGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTAAAGAAAATGACAAACTATTTAG
128 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
*
22641130 ACCAAATGATGCGATT--T---
193 ACCAAATGATTCGATTACTGAG
** * * * * *
22641147 C--CCAA------GAAAATTACTCGAAGGAATGCATCGTCTTGAATACATTAAGGAAACAAAATT
1 CATGGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTT
* * * * * *
22641204 ATAAAAGAACTAGTAAAAGTTTGACAAGTTTGGAAGTTCTTCCCAGAACCAATAGAGTAACAATT
66 ATAAAGGAACTCGTAAAAGTTT-ACAAGTTCGGAAGTTCGTCCAAGAACCAATAGAGAAACAATT
* *
22641269 CTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
130 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
*
22641334 CAAATGATTCGATTAATCGAG
195 CAAATGATTCGATTACT-GAG
* * * * * *
22641355 CATGGAATGTTGGGAAAACTACTTGAAGGAATGTATCGTCTTGAATACTTTAAGGAATCGAAGTT
1 CATGGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTT
* *
22641420 ATAAAGGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATT
66 ATAAAGGAACTCGTAAAAGTTT-ACAAGTTCGGAAGTTCGTCCAAGAACCAATAGAGAAACAATT
* * * * *
22641485 GTTACGTAAATGAGTCTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGA-
130 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
* * *
22641549 CAAACTGATTCAATTTCCCGAG
195 CAAA-TGATTCGA-TTACTGAG
* * * * * * *
22641571 CATGGAATGTTTGG-TAATT-TTTGAAGGAATAGATTGTCTTGAATACTTTTAAGGAACCGAAGT
1 CATGGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCAAAGT
* * * * * **
22641634 AATAAAGGATCTCGAAAAAG-TGAAAAGTTCTTAAGTTCGTCCAAGAACC-A-AGAGAAACAATT
65 TATAAAGGAACTCGTAAAAGTTTACAAGTTCGGAAGTTCGTCCAAGAACCAATAGAGAAACAATT
* * * *
22641696 CTCACGTAAAAAAGTTTTTAATTAAAATACCAAAACTTGTTTAGAAAATGACAAACTATTTAGAC
130 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
* *
22641761 CAAATAATGCGATT--T---
195 CAAATGATTCGATTACTGAG
** * *
22641776 C-CCG-A------GAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAAACGAAA-T
1 CATGGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG-AACCAAAGT
* * * * * * *
22641832 TATAAAAGAACTAGTAAAAGTTTGATAAGTTCAGAAGTTCTTCCCAGAACCAATAGAGTAACAAT
65 TATAAAGGAACTCGTAAAAGTTT-ACAAGTTCGGAAGTTCGTCCAAGAACCAATAGAGAAACAAT
* * * *
22641897 TCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACCTGTTTATAAAATGACAAGCTATTTAGA
129 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA
* **
22641962 CCAAATCATTCGATTAACCAAG
194 CCAAATGATTCGATT-ACTGAG
* *
22641984 CATGGAATGTTGGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAA-TAGAAGT
1 CATGGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-AAGT
** * *
22642048 TATATCGGAACTCGTAAAAGCTTGACAAGTTC-GAAGGTTCATCCAAGAACC-A-AGAGAAACAA
65 TATAAAGGAACTCGTAAAAG-TTTACAAGTTCGGAA-GTTCGTCCAAGAACCAATAGAGAAACAA
* * * * *
22642110 TTCTCATGTAAATATGTTTTAAATTCAACGA-TAAAACTTGT
128 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
22642151 GATGAGATTT
Statistics
Matches: 1344, Mismatches: 209, Indels: 155
0.79 0.12 0.09
Matches are distributed among these distances:
197 1 0.00
198 27 0.02
199 35 0.03
200 102 0.08
201 146 0.11
202 178 0.13
203 1 0.00
204 3 0.00
205 3 0.00
206 2 0.00
207 3 0.00
208 3 0.00
209 1 0.00
210 8 0.01
211 73 0.05
212 6 0.00
213 32 0.02
214 137 0.10
215 62 0.05
216 513 0.38
217 8 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (214 bp):
CATGGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTT
ATAAAGGAACTCGTAAAAGTTTACAAGTTCGGAAGTTCGTCCAAGAACCAATAGAGAAACAATTC
TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
AAATGATTCGATTACTGAG
Found at i:22640944 original size:201 final size:201
Alignment explanation
Indices: 22640599--22642036 Score: 853
Period size: 202 Copynumber: 7.0 Consensus size: 201
22640589 AATGGAACTC
* * * *
22640599 GTAAAAGCTTT-ACTAGTTCGGAAGTTAG-TCCAAGAACCAATAGAGAAATAATTCTCACGTAAA
1 GTAAAAG-TTTGACAAGTTCGGAAGTTTGTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * *
22640662 TAAGTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGACAAACTATTTAGGCCAAATGATA
65 TAAGTTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACAAACTATTTA-GACAAATGATT
** * *
22640726 CGATTTCCTAAGCATGGAATGTTCAGAAAATTGCTTGATAGAATGGATCGTCTTGATTAATTT-A
128 CGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTTGA-AGAATGGATCGTCTTGAATAATTTAA
*
22640790 AGGTACCAAA
192 AGGTAACAAA
* *
22640800 GTAAAAGTTTGACAAGTACGGAAGTTTGTTCC-AGAACCAAGAGAGAAACAATTCCCACGTAAAT
1 GTAAAAGTTTGACAAGTTCGGAAGTTTGTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
22640864 GAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTAATTAGACAAACTGATTCA
66 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAA-TGATTCG
** *
22640929 ATTTCTTGAGCATGGAATGTTTGGAAAAATT--TTGAAGAAATGGATCGTCTTGAATACATTTAA
130 ATTTCCCGAGCATGGAATGTTCGG-AAAATTGCTTGAAG-AATGGATCGTCTTGAATA-ATTT-A
*
22640992 GGAACCGAAGTAATAAA
191 --AA--G--GTAACAAA
** * * *
22641009 GGATCTCGAAAAAGTTTGACAAGTTCTTAAGTTCG-TCAAAGAACC-A-AGAGAAACAATTCCCA
1 -G---T---AAAAGTTTGACAAGTTCGGAAGTTTGTTCCAAGAACCAAGAGAGAAACAATTCTCA
* ** *
22641071 CGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTAAAGAAAATGACAAACTATTTAGACCAAA
59 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA-CAAA
* * * * * * *
22641136 TGATGCGATTTCCCAAG-A--AAAT-TACTC-GAAGGAATGCATCGTCTTGAATACAT-TA-AGG
123 TGATTCGATTTCCCGAGCATGGAATGT--TCGGAA--AAT---T-G-CTTGAAGA-ATGGATCGT
**** * *
22641194 AAACAA-AATTATAAAAG-AAC-TA
178 CTTGAATAATT-TAAAGGTAACAAA
* * * * *
22641216 GTAAAAGTTTGACAAGTTTGGAAG-TTCTTCCCAGAACCAATAGAGTAACAATTCTCACGTAAAT
1 GTAAAAGTTTGACAAGTTCGGAAGTTTGTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* *
22641280 AAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCG
66 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA-CAAATGATTCG
*** * * * * *
22641345 ATTAATCGAGCATGGAATGTTGGGAAAACTACTTGAAGGAATGTATCGTCTTGAATACTTTAAGG
130 ATTTCCCGAGCATGGAATGTTCGGAAAATTGCTTGAA-GAATGGATCGTCTTGAATAATTT-A--
*
22641410 AATCGAAGTTATAAAGGAA
191 AA--G--G-TA-ACA--AA
* * * *
22641429 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCG-TCCAAGAACAAAGAGAGAAACAATTGTTACGTA
1 ---GTAAAAGTTTGACAAGTTCGGAAGTTTGTTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * *
22641493 AATGAGTCTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACAAACTGAT
63 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAA-TGAT
* * * * * * * *
22641558 TCAATTTCCCGAGCATGGAATGTTTGG-TAATT-TTTGAAGGAATAGATTGTCTTGAATACTTTT
127 TCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTTGAA-GAATGGATCGTCTTGAATAATTTA
*
22641621 AAGG-AACCGAA
191 AAGGTAA-CAAA
* ** *
22641632 GTAATAAAGGATCTCGAAAAAGTGAAAAGTTCTTAAGTTCG-TCCAAGAACC-A-AGAGAAACAA
1 GT-A-AAA-G-T-T--------TGACAAGTTCGGAAGTTTGTTCCAAGAACCAAGAGAGAAACAA
* * * *
22641694 TTCTCACGTAAAAAAGTTTTTAATTAAAATACCAAAACTTGTTTAGAAAATGACAAACTATTTAG
53 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
* * * * * * **
22641759 ACCAAATAATGCGATTTCCCGAG-A--AAATTGCTC-GAAGGAATGCATCGTCTTGAATACTTTA
118 A-CAAATGATTCGATTTCCCGAGCATGGAA-TGTTCGGAA--AAT---T-G-CTTGAAGAATGGA
** **** * *
22641820 AGGAAACG-A-AATTATAAAAG-AAC-TA
174 TCGTCTTGAATAATT-TAAAGGTAACAAA
* * * * * *
22641845 GTAAAAGTTTGATAAGTTCAGAAG-TTCTTCCCAGAACCAATAGAGTAACAATTCTCACGTAAAT
1 GTAAAAGTTTGACAAGTTCGGAAGTTTGTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * *
22641909 AAGTTTTTAATTTAAAGACCAAAACCTGTTTATAAAATGACAAGCTATTTAGACCAAATCATTCG
66 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA-CAAATGATTCG
** * * * * *
22641974 ATTAACCAAGCATGGAATGTTGGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAA
130 ATTTCCCGAGCATGGAATGTTCGGAAAATTGCTTGAA-GAATGGATCGTCTTGAATAATTTAA
22642037 GGAATAGAAG
Statistics
Matches: 954, Mismatches: 180, Indels: 207
0.71 0.13 0.15
Matches are distributed among these distances:
198 13 0.01
199 13 0.01
200 89 0.09
201 133 0.14
202 186 0.19
203 13 0.01
204 6 0.01
205 15 0.02
206 2 0.00
207 4 0.00
208 6 0.01
209 13 0.01
210 7 0.01
211 93 0.10
212 10 0.01
213 33 0.03
214 112 0.12
215 26 0.03
216 162 0.17
217 9 0.01
218 2 0.00
219 7 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (201 bp):
GTAAAAGTTTGACAAGTTCGGAAGTTTGTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAATGATTCGA
TTTCCCGAGCATGGAATGTTCGGAAAATTGCTTGAAGAATGGATCGTCTTGAATAATTTAAAGGT
AACAAA
Found at i:22641287 original size:416 final size:415
Alignment explanation
Indices: 22640320--22641985 Score: 1545
Period size: 416 Copynumber: 4.0 Consensus size: 415
22640310 GAATGTTCGA
* ** * * *
22640320 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTCGT
1 AAAATT-CTCGAAGGAAT-GATCGTCTTGAATACATTAAGGAAACAAAATTATAAAAGAACTAGT
* * * * *
22640385 AAAAGTCTGACAAGTTCT-GCATTTCATCCCAAAACCAATAGAGAAACAATTCTCACGTAAATAA
64 AAAAGTTTGACAAGTT-TGGAAGTTCTTCCCAGAACCAATAGAGAAACAATTCTCACGTAAATAA
*
22640449 GTTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGAT
128 GTTTTTAATTTAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGAT
* * *
22640514 TAAC-TGAGCATGGAATG-TTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTCTAAGG
193 T-ACTTGAGCATGGAATGTTTGGAAAAATT--TTGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * *
22640577 AACCAAAGTTATAATGGAACTCGTAAAAGCTTT-ACTAGTTCGGAAGTTAGTCCAAGAACCAATA
255 AACCGAAGTTATAAAGGAACTCGTAAAAG-TTTGACAAGTTCGGAAGTTCGTCCAAGAACC-AGA
* *
22640641 GAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGACA
318 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACA
* *
22640705 AACTATTTAGGCCAAATGATACGATTTCCTAAGC
382 AACTATTTAGACCAAATGATACGATTTCCCAAGC
* * * ** *** * *
22640739 ATGGAATGT-TCAGAA--AAT--T-G-CTTG-ATAGA--ATGGATCGTCTTGATTAATTTAAGGT
1 A--AAAT-TCTC-GAAGGAATGATCGTCTTGAATACATTAAGGA--AACAAAATT-A-TAAAAG-
* * ** * * *
22640794 ACCAAAGTAAAAGTTTGACAAGTACGGAAGTT-TGTTCCAGAACCAAGAGAGAAACAATTCCCAC
57 AAC-TAGTAAAAGTTTGACAAGTTTGGAAGTTCT-TCCCAGAACCAATAGAGAAACAATTCTCAC
* * *
22640858 GTAAATGAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTAATTAGA-CAAAC
120 GTAAATAAGTTTTTAATTTAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAA-
* * *
22640922 TGATTCAATTTCTTGAGCATGGAATGTTTGGAAAAATTTTGAAGAAATGGATCGTCTTGAATACA
184 TGATTCGATTACTTGAGCATGGAATGTTTGGAAAAATTTTGAAGGAATGGATCGTCTTGAATAC-
* * * ** *
22640987 TTTAAGGAACCGAAGTAATAAAGGATCTCGAAAAAGTTTGACAAGTTCTTAAGTTCGTCAAAGAA
248 TTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA
* * ** *
22641052 CCA-AGAGAAACAATTCCCACGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTAAAGAAAAT
313 CCAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
*
22641116 GACAAACTATTTAGACCAAATGATGCGATTTCCCAAG-
378 GACAAACTATTTAGACCAAATGATACGATTTCCCAAGC
22641153 AAAATTACTCGAAGGAATGCATCGTCTTGAATACATTAAGGAAACAAAATTATAAAAGAACTAGT
1 AAAATT-CTCGAAGGAATG-ATCGTCTTGAATACATTAAGGAAACAAAATTATAAAAGAACTAGT
*
22641218 AAAAGTTTGACAAGTTTGGAAGTTCTTCCCAGAACCAATAGAGTAACAATTCTCACGTAAATAAG
64 AAAAGTTTGACAAGTTTGGAAGTTCTTCCCAGAACCAATAGAGAAACAATTCTCACGTAAATAAG
**
22641283 TTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATT
129 TTTTTAATTTAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATT
* * * * * * *
22641348 AATCGAGCATGGAATGTTGGGAAAACTACTTGAAGGAATGTATCGTCTTGAATACTTTAAGGAAT
194 ACTTGAGCATGGAATGTTTGGAAAAAT-TTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
*
22641413 CGAAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGA
258 CGAAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC-CAGAGAGA
* * * * *
22641478 AACAATTGTTACGTAAATGAGTCTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTA
322 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA
* * *
22641543 TTTAGA-CAAACTGATTCAATTTCCCGAGCATGG
387 TTTAGACCAAA-TGATACGATTTCCC-A--A-GC
* * * * * * * * *
22641576 AATGTTTGGTAATTTTTGAAGGAATAGATTGTCTTGAATACTTTTAAGGAACCGAAGTAATAAAG
1 AA--------AATTCTCGAAGGAAT-GATCGTCTTGAATAC-ATTAAGGAAACAAAATTATAAAA
* * * * * * *
22641641 GATCTCGAAAAAG--TGAAAAGTTCT-TAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCAC
56 GAACTAGTAAAAGTTTGACAAGTT-TGGAAGTTCTTCCCAGAACCAATAGAGAAACAATTCTCAC
* * * * *
22641701 GTAAAAAAGTTTTTAATTAAAATACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAAT
120 GTAAATAAGTTTTTAATTTAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * ** * * * *
22641766 AATGCGATTTCCCGAG-A---AA--ATT-G------CTCGAAGGAATGCATCGTCTTGAATACTT
185 GATTCGATTACTTGAGCATGGAATGTTTGGAAAAATTTTGAAGGAATGGATCGTCTTGAATACTT
* * * * * * * *
22641818 TAAGGAAACGAAATTATAAAAGAACTAGTAAAAGTTTGATAAGTTCAGAAGTTCTTCCCAGAACC
250 TAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC
* * * * *
22641883 AATAGAGTAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACCTGTTTATAAAATG
315 -AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
* * * **
22641948 ACAAGCTATTTAGACCAAATCATTCGATTAACCAAGC
379 ACAAACTATTTAGACCAAATGATACGATTTCCCAAGC
22641985 A
1 A
22641986 TGGAATGTTG
Statistics
Matches: 1031, Mismatches: 162, Indels: 118
0.79 0.12 0.09
Matches are distributed among these distances:
409 2 0.00
410 1 0.00
411 5 0.00
412 7 0.01
413 169 0.16
414 13 0.01
415 90 0.09
416 233 0.23
417 212 0.21
418 93 0.09
419 10 0.01
420 11 0.01
421 8 0.01
422 6 0.01
423 4 0.00
426 1 0.00
427 87 0.08
428 1 0.00
429 23 0.02
430 23 0.02
431 32 0.03
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (415 bp):
AAAATTCTCGAAGGAATGATCGTCTTGAATACATTAAGGAAACAAAATTATAAAAGAACTAGTAA
AAGTTTGACAAGTTTGGAAGTTCTTCCCAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTT
TTTAATTTAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTAC
TTGAGCATGGAATGTTTGGAAAAATTTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
AGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGAGAGAAACA
ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
GACCAAATGATACGATTTCCCAAGC
Found at i:22641803 original size:629 final size:626
Alignment explanation
Indices: 22640306--22642122 Score: 2336
Period size: 629 Copynumber: 2.9 Consensus size: 626
22640296 AATTCTTGTC
* * *
22640306 CATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGATCCGAAGT
1 CATGGAATGTTTGGAAAAATT--TTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
* * * * ** * *
22640370 TATAAAAGAACTCGTAAAAGTCTGACAAGTTCTGCATTTCATCCCAA-AACCAATAGAGAAACAA
64 AATAAAGGATCTCGAAAAAGT-TGACAAGTTCTTAAGTTCGT-CCAAGAACC-A-AGAGAAACAA
* * *
22640434 TTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAG
125 TTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAG
* ** *
22640499 ACCAAATGATTCGATTAACTGAGCATGGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCTT
190 ACCAAATGATGCGATT---T---C-CCG-A------GAAAATTGCTCGAAGGAATGCATCGTCTT
* * ** * * **
22640564 GAATACTCTAAGGAACCAAAGTTATAATGGAACTCGTAAAAGCTTT-ACTAGTTCGGAAGTTAGT
241 GAATACT-TAAGGAAACAAAATTATAAAAGAACTAGTAAAAG-TTTGACAAGTTCGGAAGTTCTT
* * * * *
22640628 CCAAGAACCAATAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CACAAACTTTT
304 CCCAGAACCAATAGAGTAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCA-AAACTTGT
* * **
22640692 TTACAAAATGACAAACTATTTAGGCCAAATGATACGATT--TCCTAAGCATGGAATGTTCAGAAA
368 TTACAAAATGACAAACTATTTAGACCAAATGATTCGATTAAT-C-AAGCATGGAATGTTGGGAAA
* * **
22640755 ATTGCTTGATA-GAATGGATCGTCTTGATTAATTT----AA-G--G-TA-CCA--AA---GTAAA
431 ATTGCTTGA-AGGAAT-GATCGTCTTGAATACTTTAAGGAATGAAGTTATAAAGGAACTCGTAAA
* * *
22640805 AGTTTGACAAGTACGGAAGTTTGTTCC-AGAACCAAGAGAGAAACAATTCCCACGTAAATGAGTT
494 AGTTTGACAAGTTCGGAAGTTCG-TCCAAGAA-CAAGAGAGAAACAATTCCCACGTAAATGAGTC
22640869 TTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTAATTAGACAAACTGATTCAATTTC
557 TTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTAATTAGACAAACTGATTCAATTTC
**
22640934 TTGAG
622 CCGAG
*
22640939 CATGGAATGTTTGGAAAAATTTTGAAGAAATGGATCGTCTTGAATACATTTAAGGAACCGAAGTA
1 CATGGAATGTTTGGAAAAATTTTGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTA
* *
22641004 ATAAAGGATCTCGAAAAAGTTTGACAAGTTCTTAAGTTCGTCAAAGAACCAAGAGAAACAATTCC
65 ATAAAGGATCTCGAAAAAG-TTGACAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAACAATTCT
**
22641069 CACGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTAAAGAAAATGACAAACTATTTAGACCA
129 CACGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCA
* *
22641134 AATGATGCGATTTCCCAAGAAAATTACTCGAAGGAATGCATCGTCTTGAATACATTAAGGAAACA
194 AATGATGCGATTTCCCGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATAC-TTAAGGAAACA
*
22641199 AAATTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGGAAGTTCTTCCCAGAACCAATAGAGTAA
258 AAATTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCTTCCCAGAACCAATAGAGTAA
*
22641264 CAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
323 CAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * *
22641329 TAGACCAAATGATTCGATTAATCGAGCATGGAATGTTGGGAAAACTACTTGAAGGAATGTATCGT
388 TAGACCAAATGATTCGATTAATCAAGCATGGAATGTTGGGAAAATTGCTTGAAGGAATG-ATCGT
22641394 CTTGAATACTTTAAGGAATCGAAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
452 CTTGAATACTTTAAGGAAT-GAAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
***
22641459 GTCCAAGAACAAAGAGAGAAACAATTGTTACGTAAATGAGTCTTTAATTCAAAGACCAAAACATG
516 GTCCAAGAAC-AAGAGAGAAACAATTCCCACGTAAATGAGTCTTTAATTCAAAGACCAAAACATG
*
22641524 TTTACAAAATGACAAACTATTTAGACAAACTGATTCAATTTCCCGAG
580 TTTACAAAATGACAAACTAATTAGACAAACTGATTCAATTTCCCGAG
* * * *
22641571 CATGGAATGTTTGG-TAATTTTTGAAGGAATAGATTGTCTTGAATACTTTTAAGGAACCGAAGTA
1 CATGGAATGTTTGGAAAAATTTTGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTA
*
22641635 ATAAAGGATCTCGAAAAAG-TGAAAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAACAATTCTC
65 ATAAAGGATCTCGAAAAAGTTGACAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAACAATTCTC
* *
22641699 ACGTAAAAAAGTTTTTAATTAAAATACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAA
130 ACGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAA
* *
22641764 ATAATGCGATTTCCCGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAAACGA
195 ATGATGCGATTTCCCGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATAC-TTAAGGAAACAA
* *
22641829 AATTATAAAAGAACTAGTAAAAGTTTGATAAGTTCAGAAGTTCTTCCCAGAACCAATAGAGTAAC
259 AATTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCTTCCCAGAACCAATAGAGTAAC
* * *
22641894 AATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACCTGTTTATAAAATGACAAGCTATTT
324 AATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
* * *
22641959 AGACCAAATCATTCGATTAACCAAGCATGGAATGTTGGGAAAATTGCTCGAAGGAATAGATCGTC
389 AGACCAAATGATTCGATTAATCAAGCATGGAATGTTGGGAAAATTGCTTGAAGGAAT-GATCGTC
** *
22642024 TTGAATACTTTAAGGAATAGAAGTTATATCGGAACTCGTAAAAGCTTGACAAGTTC-GAAGGTTC
453 TTGAATACTTTAAGGAAT-GAAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGGAA-GTTC
* * * *
22642088 ATCCAAGAACCA-AGAGAAACAATTCTCATGTAAAT
516 GTCCAAGAACAAGAGAGAAACAATTCCCACGTAAAT
22642123 ATGTTTTAAA
Statistics
Matches: 1054, Mismatches: 100, Indels: 66
0.86 0.08 0.05
Matches are distributed among these distances:
616 5 0.00
617 211 0.20
618 4 0.00
619 1 0.00
621 2 0.00
623 2 0.00
625 2 0.00
626 2 0.00
627 21 0.02
628 5 0.00
629 410 0.39
630 1 0.00
631 151 0.14
632 166 0.16
633 60 0.06
634 11 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (626 bp):
CATGGAATGTTTGGAAAAATTTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTAA
TAAAGGATCTCGAAAAAGTTGACAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAA
TGATGCGATTTCCCGAGAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTAAGGAAACAAAA
TTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCTTCCCAGAACCAATAGAGTAACAA
TTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
ACCAAATGATTCGATTAATCAAGCATGGAATGTTGGGAAAATTGCTTGAAGGAATGATCGTCTTG
AATACTTTAAGGAATGAAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA
AGAACAAGAGAGAAACAATTCCCACGTAAATGAGTCTTTAATTCAAAGACCAAAACATGTTTACA
AAATGACAAACTAATTAGACAAACTGATTCAATTTCCCGAG
Found at i:22641907 original size:413 final size:419
Alignment explanation
Indices: 22641152--22642121 Score: 1098
Period size: 413 Copynumber: 2.3 Consensus size: 419
22641142 GATTTCCCAA
* * * * *
22641152 GAAAATTACTCGAAGGAAT-GCATCGTCTTGAATACATTAAGGAAACA-AAATTATAAAAGAACT
1 GAAAATTGCTCGAAGGAATAG-ATCGTCTTGAATACTTTAAGG-AACAGAAGTAATAAAGGAACT
* * * * * * * * *
22641215 AGTAAAAGTTTGACAAGTTTGGAAGTTCTTCCCAGAACCAATAGAGTAACAATTCTCACGTAAAT
64 CGAAAAAG-CTGAAAAG-TTCGAAGTTCATCCAAGAACC-A-AGAGAAACAATTCTCACGTAAAA
* * * *
22641280 AAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCG
125 AAGTTTTTAATTAAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCG
* * *
22641345 ATTAATCGAGCATGGAATGTTGGGAAAACTACTTGAAGGAATGTATCGTCTTGAATACTTTAAGG
190 ATT-ATC--GCA-CGAA-----GGAAAACTACTCGAAGGAATGCATCGTCTTGAATACTTTAAGG
* * * * *
22641410 AATCGAAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAG
246 AAACGAAATTATAAAAGAACTAGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAG
* * *
22641475 AGAAACAATTGTTACGTAAATGAGTCTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAA
311 AGAAACAATTCTCACGTAAATAAGTCTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAA
* ** * *
22641540 CTATTTAGA-CAAACTGATTCAATTTCCCGAGCATGGAATGTTTG
376 CTATTTAGACCAAA-TCATTCAATTAACCAAGCATGGAATGTTGG
* * * * * *
22641584 G-TAATT-TTTGAAGGAATAGATTGTCTTGAATACTTTTAAGGAACCGAAGTAATAAAGGATCTC
1 GAAAATTGCTCGAAGGAATAGATCGTCTTGAATAC-TTTAAGGAACAGAAGTAATAAAGGAACTC
* *
22641647 GAAAAAG-TGAAAAGTTCTTAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAAAAAGT
65 GAAAAAGCTGAAAAGTTC-GAAGTTCATCCAAGAACCAAGAGAAACAATTCTCACGTAAAAAAGT
* *
22641711 TTTTAATTAAAATACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATAATGCGATT-
129 TTTTAATTAAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTA
* *
22641775 TC-C-CG-A-GAAAATTGCTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAAACGAAATTATA
194 TCGCACGAAGGAAAACTACTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAAACGAAATTATA
* * * * * *
22641836 AAAGAACTAGTAAAAGTTTGATAAGTTCAGAAGTTCTTCCCAGAACCAATAGAGTAACAATTCTC
259 AAAGAACTAGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * * * *
22641901 ACGTAAATAAGTTTTTAATTTAAAGACCAAAACCTGTTTATAAAATGACAAGCTATTTAGACCAA
324 ACGTAAATAAGTCTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAA
*
22641966 ATCATTCGATTAACCAAGCATGGAATGTTGG
389 ATCATTCAATTAACCAAGCATGGAATGTTGG
* * **
22641997 GAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAATAGAAGTTATATCGGAACTCG
1 GAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAACAGAAGTAATAAAGGAACTCG
* * *
22642062 TAAAAGCTTGACAAGTTCGAAGGTTCATCCAAGAACCAAGAGAAACAATTCTCATGTAAA
66 AAAAAGC-TGAAAAGTTCGAA-GTTCATCCAAGAACCAAGAGAAACAATTCTCACGTAAA
22642122 TATGTTTTAA
Statistics
Matches: 458, Mismatches: 70, Indels: 36
0.81 0.12 0.06
Matches are distributed among these distances:
413 183 0.40
414 37 0.08
415 26 0.06
416 45 0.10
419 1 0.00
420 1 0.00
422 1 0.00
425 2 0.00
427 83 0.18
428 3 0.01
429 21 0.05
430 25 0.05
431 29 0.06
432 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (419 bp):
GAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAACAGAAGTAATAAAGGAACTCG
AAAAAGCTGAAAAGTTCGAAGTTCATCCAAGAACCAAGAGAAACAATTCTCACGTAAAAAAGTTT
TTAATTAAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTATC
GCACGAAGGAAAACTACTCGAAGGAATGCATCGTCTTGAATACTTTAAGGAAACGAAATTATAAA
AGAACTAGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAC
GTAAATAAGTCTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAAT
CATTCAATTAACCAAGCATGGAATGTTGG
Found at i:22642277 original size:169 final size:169
Alignment explanation
Indices: 22641998--22642306 Score: 444
Period size: 169 Copynumber: 1.8 Consensus size: 169
22641988 GAATGTTGGG
***
22641998 AAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAATAGAAGTTATATCGGAACTCGT
1 AAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAATAGAAGTTATAAAAGAACTCGT
*
22642063 AAAAGCTTGACAAGTTCGAAGGTTCATCCAAGAACCAAGAGAAACAATTCTC-ATGTAAATATGT
66 AAAAGCTTGACAAGTTCGAAGGTTCATCCAAGAACCAAGAGAAACAATTCTCAAT-TAAATAAGT
22642127 TTTAAATTCAACGATAAAACTTGTGATGAGATTTTCCGAC
130 TTTAAATTCAACGATAAAACTTGTGATGAGATTTTCCGAC
* ** * **
22642167 AAAATTGCTCGAAGGAATGGATCGTCTTGCCTACTTTCTA-GAATCTAAGTTATAAAAGAACTCG
1 AAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTT-AAGGAATAGAAGTTATAAAAGAACTCG
* * *
22642231 TAAAAGTTTGACATGTTCGGAA-GTTCGTCCAAGAACCAAGAGAAACAATTCTCAATTAAATAAG
65 TAAAAGCTTGACAAGTTC-GAAGGTTCATCCAAGAACCAAGAGAAACAATTCTCAATTAAATAAG
*
22642295 TTTTTAATTCAA
129 TTTTAAATTCAA
22642307 AGACCGAAAG
Statistics
Matches: 123, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
169 117 0.95
170 6 0.05
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (169 bp):
AAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAATAGAAGTTATAAAAGAACTCGT
AAAAGCTTGACAAGTTCGAAGGTTCATCCAAGAACCAAGAGAAACAATTCTCAATTAAATAAGTT
TTAAATTCAACGATAAAACTTGTGATGAGATTTTCCGAC
Found at i:22642844 original size:214 final size:214
Alignment explanation
Indices: 22642167--22643292 Score: 1255
Period size: 214 Copynumber: 5.2 Consensus size: 214
22642157 ATTTTCCGAC
** * * *
22642167 AAAATTGCTCGAAGGAATGGATCGTCTTGCCTACTTTCTA-GAATCTAAGTTATAAAAGAACTCG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGT-AAGGAATCAAAGTTATAAAAGAACTCG
* * **
22642231 TAAAAGTTTGACATGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCAATTAAATAAGT
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAATAATTCTCACGTAAATAAGT
* * * * * *
22642296 TTTTAATTCAAAGACCGAAAGTTGATAACAATATGACAAACTATTTAGACTTAACT-ATGCGATT
130 TTTTAATTCAAACACCAAAAGTTGATTACAAAATGACAAACTATTTAGAC-CAAATGATGCGATT
* *
22642360 TCTCGAGCATGGAATGTTTGA
194 TCCCAAGCATGGAATGTTTGA
* * ** *
22642381 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTATAACAAACCAAAGTTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAAGGAATCAAAGTTATAAAAGAACTCGT
* * * * * * *
22642446 AAAAGTCTGACAAGCTCGAAAGTTCATCCAAGAACCATGACAGAAATAATTCTTACATAAATAAT
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA--AGAGAAATAATTCTCACGTAAATAA-
* * * * * *
22642511 GTTTTTAATTCAAAGACTAAAAGTTGTTTACTAAATAACAAACTATTTAGACTAAATGATGCG-T
128 GTTTTTAATTCAAACACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * *
22642575 TTTCCAGAGCATGG-ATCGTTCGT
193 TTCCCA-AGCATGGAAT-GTTTGA
* * * *
22642598 AAAATTGCTCAAACGAATGGATCGTCTTGAATACAGTAAGGAATCAAAGTTATAAAAGAGCTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAAGGAATCAAAGTTATAAAAGAACTCGT
** *
22642663 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAATGTTTCTCATGTAAATAAGTT
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAATAATTCTCACGTAAATAAGTT
* ** * * * * *
22642728 TTTAATTCAAACACCACATCTTGCTTACAAAATGACAAACTATTTACACCGAATGATTCAATTTC
131 TTTAATTCAAACACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
22642793 CCAAGCATGGAATGTTTGA
196 CCAAGCATGGAATGTTTGA
* * * **
22642812 AAAATTGCTCGAGGGAATGGATCATCTTGAATACTTTAAGGAGCCAAA-TTAATAAAAGAACTCG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAAGGAATCAAAGTT-ATAAAAGAACTCG
* * * *
22642876 TACAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-A-AGAGAAATAATTCTCACGTAAATAA
* *
22642941 GTTTTTTAATTCAAACACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGA
128 G-TTTTTAATTCAAACACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * *
22643006 TTT-CTAGAGCAT-GAATCGTTCGT
192 TTTCCCA-AGCATGGAAT-GTTTGA
* * ** * * * **
22643029 AAAATTGCTCAAATGAATGGATTTTCTTAAATACTGTAAGGAATCAAACTTATAAAAGAGCTTAT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAAGGAATCAAAGTTATAAAAGAACTCGT
*
22643094 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAATTATTCTCACGTAAATAAGTT
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAATAATTCTCACGTAAATAAGTT
** *
22643159 TTTAATTCAAACACACAAACTTTTA-TACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
131 TTTAATTCAAACAC-CAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* *
22643223 CACGAGCATGGAATGTTT-A
195 CCCAAGCATGGAATGTTTGA
* * * * *
22643242 GAAAATTGCTTGACA-GAATGGATCGTCTTGATTACTTTAAGGTACCAAAGT
1 -AAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTGTAAGGAATCAAAGT
22643293 AAAAGTTTGA
Statistics
Matches: 759, Mismatches: 132, Indels: 42
0.81 0.14 0.05
Matches are distributed among these distances:
213 3 0.00
214 333 0.44
215 64 0.08
216 59 0.08
217 298 0.39
218 2 0.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (214 bp):
AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAAGGAATCAAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAATAATTCTCACGTAAATAAGTT
TTTAATTCAAACACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
CCAAGCATGGAATGTTTGA
Found at i:22642987 original size:431 final size:430
Alignment explanation
Indices: 22642167--22643292 Score: 1482
Period size: 431 Copynumber: 2.6 Consensus size: 430
22642157 ATTTTCCGAC
* * ** * * * *
22642167 AAAATTGCTCGAAGGAATGGATCGTCTTGCCTACTTTCTA-GAATCTAAGTTATAAAAGAACTCG
1 AAAATTGCTCAAACGAATGGATCGTCTTGAATACTGT-AAGGAATCAAAGTTATAAAAGAGCTCG
* **
22642231 TAAAAGTTTGACATGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCAAT-TAAATAAG
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAA-TTTTCTC-ATGTAAATAAG
* * * * * *
22642295 TTTTTAATTCAAAGACCGA-AAGTTGATAACAATATGACAAACTATTTAGACTTAACT-ATGCGA
128 TTTTTAATTCAAACACC-ACAACTTGATTACAAAATGACAAACTATTTAGAC-CAAATGATGCGA
* * * **
22642358 TTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTATAACAA
191 TTTCACGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
*
22642423 ACCAAAGTTATAAAAGAACTCGTAAAAGTCTGACAAGCTCGAAAGTTCATCCAAGAACCATGACA
256 ACCAAAGTTATAAAAGAACTCGTAAAAGTCTGACAAGCTCGAAAGTTCATCCAAGAACCAAGACA
* * * * * * *
22642488 GAAATAATTCTTACATAAATAATGTTTTTAATTCAAAGACTAAAAGTTGTTTACTAAATAACAAA
321 GAAACAATTCTCACATAAATAATGTTTTTAATTCAAACACCAAAAGTTGATAACAAAATAACAAA
* * *
22642553 CTATTTAGACTAAATGATGCGTTTTCCAGAGCATGGATCGTTCGT
386 CTATTTAGACCAAATGATGCGATTTCCAGAGCATGAATCGTTCGT
*
22642598 AAAATTGCTCAAACGAATGGATCGTCTTGAATACAGTAAGGAATCAAAGTTATAAAAGAGCTCGT
1 AAAATTGCTCAAACGAATGGATCGTCTTGAATACTGTAAGGAATCAAAGTTATAAAAGAGCTCGT
22642663 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAATGTTTCTCATGTAAATAAGTT
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAT-TTTCTCATGTAAATAAGTT
* * * * * *
22642728 TTTAATTCAAACACCACATCTTGCTTACAAAATGACAAACTATTTACACCGAATGATTCAATTTC
130 TTTAATTCAAACACCACAACTTGATTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * *
22642793 CCAAGCATGGAATGTTTGAAAAATTGCTCGAGGGAATGGATCATCTTGAATACTTTAAGGAGCCA
195 ACGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* * * *
22642858 AA-TTAATAAAAGAACTCGTACAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAA
260 AAGTT-ATAAAAGAACTCGTAAAAGTCTGACAAGCTCGAAAGTTCATCCAAGAACCAAGACAGAA
*
22642922 ACAATTCTCACGTAAATAA-GTTTTTTAATTCAAACACCAAAAGTTGATAACAAAATGAA-AAAC
324 ACAATTCTCACATAAATAATG-TTTTTAATTCAAACACCAAAAGTTGATAACAAAAT-AACAAAC
*
22642985 TATTTAGACCAAATGATGCGATTTCTAGAGCATGAATCGTTCGT
387 TATTTAGACCAAATGATGCGATTTCCAGAGCATGAATCGTTCGT
* ** * * **
22643029 AAAATTGCTCAAATGAATGGATTTTCTTAAATACTGTAAGGAATCAAACTTATAAAAGAGCTTAT
1 AAAATTGCTCAAACGAATGGATCGTCTTGAATACTGTAAGGAATCAAAGTTATAAAAGAGCTCGT
*
22643094 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAATTATTCTCACGTAAATAAGTT
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAATT-TTCTCATGTAAATAAGTT
*
22643159 TTTAATTCAAACA-CACAAACTT-TTATACAAAATGACAAACTATTTAGACCAAATGATGCGATT
130 TTTAATTCAAACACCAC-AACTTGAT-TACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * *
22643222 TCACGAGCATGGAATGTTT-AGAAAATTGCTTGACA-GAATGGATCGTCTTGATTACTTTAAGGT
193 TCACGAGCATGGAATGTTTGA-AAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGA
22643285 ACCAAAGT
256 ACCAAAGT
22643293 AAAAGTTTGA
Statistics
Matches: 608, Mismatches: 73, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
430 15 0.02
431 590 0.97
432 3 0.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (430 bp):
AAAATTGCTCAAACGAATGGATCGTCTTGAATACTGTAAGGAATCAAAGTTATAAAAGAGCTCGT
AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAATTTTCTCATGTAAATAAGTTT
TTAATTCAAACACCACAACTTGATTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCA
CGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
AGTTATAAAAGAACTCGTAAAAGTCTGACAAGCTCGAAAGTTCATCCAAGAACCAAGACAGAAAC
AATTCTCACATAAATAATGTTTTTAATTCAAACACCAAAAGTTGATAACAAAATAACAAACTATT
TAGACCAAATGATGCGATTTCCAGAGCATGAATCGTTCGT
Found at i:22643196 original size:20 final size:21
Alignment explanation
Indices: 22643173--22643214 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22643163 ATTCAAACAC
*
22643173 ACAAACT-TTTATACAAAATG
1 ACAAACTATTTAGACAAAATG
*
22643193 ACAAACTATTTAGACCAAATG
1 ACAAACTATTTAGACAAAATG
22643214 A
1 A
22643215 TGCGATTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.50, C:0.17, G:0.07, T:0.26
Consensus pattern (21 bp):
ACAAACTATTTAGACAAAATG
Found at i:22643656 original size:8 final size:9
Alignment explanation
Indices: 22643635--22643675 Score: 68
Period size: 8 Copynumber: 4.8 Consensus size: 9
22643625 TTTAATTTGC
22643635 TTTAGTTAA
1 TTTAGTTAA
22643644 TTTAGTT-A
1 TTTAGTTAA
22643652 TTTAGTTAA
1 TTTAGTTAA
22643661 TTTAGTT-A
1 TTTAGTTAA
22643669 TTTAGTT
1 TTTAGTT
22643676 TAAGTTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 16 0.52
9 15 0.48
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (9 bp):
TTTAGTTAA
Found at i:22643657 original size:17 final size:17
Alignment explanation
Indices: 22643635--22643675 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
22643625 TTTAATTTGC
22643635 TTTAGTTAATTTAGTTA
1 TTTAGTTAATTTAGTTA
22643652 TTTAGTTAATTTAGTTA
1 TTTAGTTAATTTAGTTA
22643669 TTTAGTT
1 TTTAGTT
22643676 TAAGTTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (17 bp):
TTTAGTTAATTTAGTTA
Found at i:22644985 original size:23 final size:24
Alignment explanation
Indices: 22644959--22645013 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 24
22644949 AAAAGTGCAA
22644959 AGTTTGAAA-TATTAAAAAAAAA-T
1 AGTTTGAAAGTA-TAAAAAAAAACT
*
22644982 AGTTCCGAAAGTATAAAAAAAAAGCT
1 AGTT-TGAAAGTATAAAAAAAAA-CT
22645008 AGTTTG
1 AGTTTG
22645014 TGATAGTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
23 4 0.15
24 14 0.54
25 3 0.12
26 5 0.19
ACGTcount: A:0.53, C:0.05, G:0.15, T:0.27
Consensus pattern (24 bp):
AGTTTGAAAGTATAAAAAAAAACT
Found at i:22647073 original size:13 final size:14
Alignment explanation
Indices: 22647054--22647092 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
22647044 GCAAAGAAAG
22647054 TGAAAAGAAAGAGA
1 TGAAAAGAAAGAGA
*
22647068 -GAAAAGAAAAAGA
1 TGAAAAGAAAGAGA
*
22647081 TGAAAAGGAAGA
1 TGAAAAGAAAGA
22647093 AAAAGAGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (14 bp):
TGAAAAGAAAGAGA
Found at i:22651718 original size:202 final size:208
Alignment explanation
Indices: 22651381--22651937 Score: 569
Period size: 215 Copynumber: 2.7 Consensus size: 208
22651371 GAAAATTTTT
* * * * * * * * **
22651381 GAAGGAATGGATCGTCTTGAATACTTTTAAGGAACCGAAGTAATAAAGGATCTCA-AAAAACTTT
1 GAAGGAATGAATCATCTTGAATAC-TTTAAGGAAACGAAATTATAAAAGAACT-AGTAAAAGATT
** **
22651445 GACAAGTTCTTAAGTTCGTCTAAGAACC-AAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
64 GACAAGTTCAGAAGTTCGTCCCAGAACCAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
*** * * *
22651509 AAAAGACCAAAAATTGTTTAGAAAATGACAAACTATTTAAACCAAATGATGCGATT-TCC-C-G-
129 AAAAGACCAAAAACCATTTACAAAATGACAAACTATGTAAACCAAATGATGCGATTACCCGCAGA
22651570 A-G-A-AAATTGCTC
194 ATGTAGAAATTGCTC
* *
22651582 GAAGGAATGTATCATCTTGAATACTTTAAGGAAATGAAATTATAAAAGAACTAGTAAAAGATTGA
1 GAAGGAATGAATCATCTTGAATACTTTAAGGAAACGAAATTATAAAAGAACTAGTAAAAGATTGA
* * * *
22651647 CAGGTTC-GAAAGTTCTTCCCAGAACCAATAGAGTAACAATTCTCACGTAAATAAGTATTTAATT
66 CAAGTTCAG-AAGTTCGTCCCAGAACCAA-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * *
22651711 TAAAGACCAAAACCCATTTACAAAATGACAAACTATGTAGACCAAATGATTCGATTACCCGAGCA
129 AAAAGACCAAAAACCATTTACAAAATGACAAACTATGTAAACCAAATGATGCGATTACCC--GCA
22651776 TGGAATGTTAAGAAATTGCTC
192 --GAATG-T-AGAAATTGCTC
** * * * * *
22651797 GAAGGAATGAATTGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTTTGA
1 GAAGGAATGAATCATCTTGAATACTTTAAGGAAACGAAATTATAAAAGAACTAGTAAAAGATTGA
* *
22651862 CAAGTTCAGAAGTTCGTCCCAGAACC-AAGAATGAAACAATTGTCACGTAAATGAGTTTTTAATT
66 CAAGTTCAGAAGTTCGTCCCAGAACCAAAG-A-GAAACAATTCTCACGTAAATAAGTTTTTAATT
*
22651926 CAAAGACCAAAA
129 AAAAGACCAAAA
22651938 CTGATACAAG
Statistics
Matches: 292, Mismatches: 44, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
199 1 0.00
200 50 0.17
201 23 0.08
202 80 0.27
203 2 0.01
206 1 0.00
209 1 0.00
210 1 0.00
211 1 0.00
213 2 0.01
214 3 0.01
215 126 0.43
216 1 0.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.27
Consensus pattern (208 bp):
GAAGGAATGAATCATCTTGAATACTTTAAGGAAACGAAATTATAAAAGAACTAGTAAAAGATTGA
CAAGTTCAGAAGTTCGTCCCAGAACCAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAA
AAGACCAAAAACCATTTACAAAATGACAAACTATGTAAACCAAATGATGCGATTACCCGCAGAAT
GTAGAAATTGCTC
Found at i:22653518 original size:24 final size:24
Alignment explanation
Indices: 22653486--22653541 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
22653476 TGTATGGATA
*
22653486 TCTTCTTGTTTTCCTTTTTCTTTT
1 TCTTCTTGTTTTCCATTTTCTTTT
*
22653510 TCTTCTTGTTTTTCATTTTCTTTT
1 TCTTCTTGTTTTCCATTTTCTTTT
*
22653534 TCCTCTTG
1 TCTTCTTG
22653542 AGAACTCTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.02, C:0.21, G:0.05, T:0.71
Consensus pattern (24 bp):
TCTTCTTGTTTTCCATTTTCTTTT
Found at i:22653521 original size:12 final size:12
Alignment explanation
Indices: 22653486--22653541 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
22653476 TGTATGGATA
22653486 TCTTCTTGTTTT
1 TCTTCTTGTTTT
* * *
22653498 CCTTTTTCTTTT
1 TCTTCTTGTTTT
22653510 TCTTCTTGTTTT
1 TCTTCTTGTTTT
*
22653522 TCATT-TTCTTTT
1 TC-TTCTTGTTTT
*
22653534 TCCTCTTG
1 TCTTCTTG
22653542 AGAACTCTCC
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
11 1 0.03
12 30 0.91
13 2 0.06
ACGTcount: A:0.02, C:0.21, G:0.05, T:0.71
Consensus pattern (12 bp):
TCTTCTTGTTTT
Found at i:22655098 original size:17 final size:17
Alignment explanation
Indices: 22655061--22655098 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
22655051 AATATATTTT
*
22655061 TTTTCTTTTTCTCGTAT
1 TTTTCTTTTTCTCGTAC
22655078 TTTTCTTTTTTCTC-TAC
1 TTTTC-TTTTTCTCGTAC
22655095 TTTT
1 TTTT
22655099 TTGATCACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTTCTTTTTCTCGTAC
Found at i:22657476 original size:216 final size:215
Alignment explanation
Indices: 22657096--22658292 Score: 1204
Period size: 216 Copynumber: 5.6 Consensus size: 215
22657086 ATTTCCCGAG
* * * * *
22657096 AAAATTGCTCGAAGAAATGCATCGCCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT
1 AAAATTGCTCGAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * ** *
22657161 AAATGTTTGACAAGTTCAGAAGTTTGTCCTTGAAACAATAGAGAAACAATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAG
* * *
22657226 TTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTACACCAAATGACTCGATT
131 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA-TCGATT
* *
22657291 TCCCGAGCATGGAATCTTTGA
195 TCCCGAGCATGGAATGTTCGA
* * * *
22657312 AAAATTGCTCGAAGGAAAT-GATAGACTAGAATACTTTGAGGAACCGAAGTTATAAAGGAACTCG
1 AAAATTGCTCGAAGG-AATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * * *
22657376 TAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAAACAACAGAGGAACAATTCTCATGTAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAA
** * * * * *
22657441 GTTTTTAATTCAAAGATTAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGTGAT
130 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-CGAT
* * * *
22657506 TTCCAGAGAATAGAATGTTCGG
194 TTCCCGAGCATGGAATGTTCGA
* * * *
22657528 AAAATTACTCGAAGGAATGGATCGTCTTCAATACTTTAAGGAATCGAA-TGTATAAAAGAACTCG
1 AAAATTGCTCGAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGT-TATAAAAGAACTCG
* * * * * *
22657592 TAAAAGTTTGACAAGTTTGGAAGCTCGTCTC-AG-AACTAATAGAAAAATAATTCTCACATAAAT
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAAAC-AAGAGAGAAACAATTCTCACGTAAAT
* * * *
22657655 AAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACACACTATTTAGACCAAATTAGGCG
128 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA-TCG
** * *
22657720 ATTTCTAGTGCATGGAATGTTCGG
192 ATTTCCCGAGCATGGAATGTTCGA
* * * *
22657744 AAAATTGCTTGAAGGAAGGGATCA-TCTTGAATGCTTTAAGGAACCGAAGCTATAAAAGAACTCG
1 AAAATTGCTCGAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
** * * *
22657808 TAAAAGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACCATTCTTACGTAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAA
* * *
22657873 GTTTTTAGTTCAAAGA-CACAAACTTTTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
130 GTTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-CGA
* * *
22657937 CTTCCCGAGCATTGAATATTCGA
193 TTTCCCGAGCATGGAATGTTCGA
* * *
22657960 AAAATTGCTCGAATGAATGGATTGTCTTGAATACTTTAAGGTACC-----------A-AA---GT
1 AAAATTGCTCGAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* *
22658010 ACAAGTTTGACAAGTTCGGAAGTTCGTCCCAA-AACCAAGAGAGAAACAATTCAATTCTCACGTA
66 AAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAGAAACAAGAGAG--A-AA--CAATTCTCACGTA
* * * *
22658074 AATTAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAAATATTTAGACAAAATGAT
125 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA-
* *
22658139 TCAATTTCCCAAGCATGGAATGTTC-A
189 TCGATTTCCCGAGCATGGAATGTTCGA
* * * * * * *
22658165 GGAAATTGTTCGAAAGAATGGATCA-TCTTGAATACTTTTAAAGAACCGAAGTAATAAAGGATCT
1 -AAAATTGCTCGAAGGAATGGAT-AGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAACT
* * ** * *
22658229 CGTAAAAGTTTTACTAGTTTTGAAGTTCGTCCAAG-AACCA-AGAGAAACAATTCTCATGTAAAT
63 CGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAAT
22658292 A
128 A
22658293 CGATGAGATT
Statistics
Matches: 803, Mismatches: 137, Indels: 83
0.78 0.13 0.08
Matches are distributed among these distances:
201 37 0.05
202 4 0.00
203 1 0.00
204 4 0.00
205 2 0.00
206 113 0.14
207 12 0.01
215 26 0.03
216 559 0.70
217 8 0.01
218 1 0.00
219 1 0.00
220 4 0.00
221 7 0.01
222 24 0.03
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (215 bp):
AAAATTGCTCGAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATCGATTT
CCCGAGCATGGAATGTTCGA
Found at i:22657659 original size:432 final size:425
Alignment explanation
Indices: 22656834--22658292 Score: 1379
Period size: 432 Copynumber: 3.4 Consensus size: 425
22656824 CAAAAAGATC
* * ** * *
22656834 TTTACAAAACGACAAACTATTTAGACAAAATGA-TATAATTTCCCGAGCAAGG-ATTGTTTAGAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGACT-CGATTTCCCGAGCATGGAATT-TTGA-AA
** * * **
22656897 AATTTTTCGAAGG-AATGTATCGTCTTGAATACTTTTAAGGAACCGAAGTAATAAAGGATA-AAG
63 AATTGCTCGAAGGAAATG-ATCATCTTGAATAC-TTTAAGGAACCGAAGTTATAAAGGA-ACTCG
* ** * * *
22656960 AAAAAGTTTGACAAGTTCTTAAGTTCGTTCAAG-AACCAAGAGAAACAATTGTCATGTAAATAAG
125 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAAACAAAGAGAAACAATTCTCATGTAAATAAG
* * * * * * *
22657024 TTTTTAATTCAAAGATGA-AAACTTGTTTAGAAAATGACAAACTATTTAAACCAAATGATGCGAT
190 TTTTTAATTCAAAGA-CACAAACTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGAC
* * * *
22657088 TTCC-------CG---A----GAAAATTGCTCGAAGAAATGCATCGCCTTGAATACTTTAAGGAA
254 TTCCAGAGAATAGAATATTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * *
22657139 CCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCAGAAGTTTGTCCTTGAAACAATAGAG
319 -CGAAG-TATAAAAGAACT-GTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AG-AACAATAGAA
* * *
22657204 AAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACCTG
379 AAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACATG
*
22657251 TTTACAAAATGACAAACTATTTACACCAAATGACTCGATTTCCCGAGCATGGAATCTTTGAAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGACTCGATTTCCCGAGCATGGAAT-TTTGAAAAA
* * *
22657316 TTGCTCGAAGGAAATGAT-AGACTAGAATACTTTGAGGAACCGAAGTTATAAAGGAACTCGTAAA
65 TTGCTCGAAGGAAATGATCA-TCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAA
* * *
22657380 AGTTTGACAAGTTCGGAAGTTCATCCAAGAAACAACAGAGGAACAATTCTCATGTAAATAAGTTT
129 AGTTTGACAAGTTCAGAAGTTCGTCCAAGAAACAA-AGAGAAACAATTCTCATGTAAATAAGTTT
* * * *
22657445 TTAATTCAAAGATTA-AAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGTGATTTC
193 TTAATTCAAAGA-CACAAACTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGACTTC
* * *
22657509 CAGAGAATAGAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTCAATACTTTAAGGAATCG
257 CAGAGAATAGAATATTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CG
* *
22657574 AATGTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGCTCGTCTCAGAACTAATAGAAAAA
321 AA-GTATAAAAGAACT-GTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAGAAC-AATAGAAAAA
* **
22657639 TAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAATTTG
382 TAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACATG
* * ** ** * * *
22657683 TTTACAAAATGACACACTATTTAGACCAAATTAGGCGATTTCTAGTGCATGGAATGTTCGGAAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGACTCGATTTCCCGAGCATGGAAT-TTTGAAAAA
* ** * * *
22657748 TTGCTTGAAGGAAGGGATCATCTTGAATGCTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAA
65 TTGCTCGAAGGAAATGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAA
* * * * *
22657813 GTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACCATTCTTACGTAAATAAGTTTT
130 GTTTGACAAGTTCAGAAGTTCGTCCAAGAAACAA-AGAGAAACAATTCTCATGTAAATAAGTTTT
* ** * *
22657878 TAGTTCAAAGACACAAACTTTTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGACTTCCC
194 TAATTCAAAGACACAAACTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGACTTCCA
* * * * *
22657943 GAGCATTGAATATTCGAAAAATTGCTCGAATGAATGGATTGTCTTGAATACTTT----AA-G--G
259 GAGAATAGAATATTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACGAAG
** * * *
22658001 --TACCA-AA--GTACAAGTTTGACAAGTTCGGAAGTTCGTCCCAAAACCAAGAGAGAAACAATT
324 TATAAAAGAACTGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAGAA-C-A-ATAGAAA-AA-T
*
22658061 CAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACATG
383 -AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACATG
* * * * * * * *
22658105 TTTACAAAATGACAAAATATTTAGACAAAATGATTCAATTTCCCAAGCATGGAATGTTCAGGAAA
1 TTTACAAAATGACAAACTATTTAGACCAAATGACTCGATTTCCCGAGCATGGAATTTTGA-AAAA
* * * * *
22658170 TTGTTCGAAAG-AATGGATCATCTTGAATACTTTTAAAGAACCGAAGTAATAAAGGATCTCGTAA
65 TTGCTCGAAGGAAAT-GATCATCTTGAATAC-TTTAAGGAACCGAAGTTATAAAGGAACTCGTAA
* * ** *
22658234 AAGTTTTACTAGTTTTGAAGTTCGTCCAAG-AACCAAGAGAAACAATTCTCATGTAAATA
128 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAAACAAAGAGAAACAATTCTCATGTAAATA
22658293 CGATGAGATT
Statistics
Matches: 858, Mismatches: 148, Indels: 68
0.80 0.14 0.06
Matches are distributed among these distances:
415 1 0.00
416 52 0.06
417 101 0.12
418 97 0.11
419 7 0.01
420 4 0.00
421 27 0.03
422 111 0.13
423 54 0.06
425 1 0.00
426 1 0.00
428 2 0.00
431 4 0.00
432 393 0.46
433 3 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (425 bp):
TTTACAAAATGACAAACTATTTAGACCAAATGACTCGATTTCCCGAGCATGGAATTTTGAAAAAT
TGCTCGAAGGAAATGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAG
TTTGACAAGTTCAGAAGTTCGTCCAAGAAACAAAGAGAAACAATTCTCATGTAAATAAGTTTTTA
ATTCAAAGACACAAACTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGACTTCCAGA
GAATAGAATATTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACGAAGTA
TAAAAGAACTGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAGAACAATAGAAAAATAATTCTCA
CGTAAATAAGTTTTTAATTCAAAGACCAAAACATG
Found at i:22658128 original size:206 final size:201
Alignment explanation
Indices: 22657811--22658202 Score: 504
Period size: 206 Copynumber: 1.9 Consensus size: 201
22657801 GAACTCGTAA
*
22657811 AAGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACCATTCTTACGTAAATAAGTT
1 AAGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACCATTCTCACGTAAATAAGTT
* * * * *
22657876 TTTAGTTCAAAGACACAAACTTTTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGACTTC
66 TTTAATTCAAAGACACAAACATGTTTACAAAATGAAAAACTATTTAGACAAAATGATGCAACTTC
* * * **
22657941 CCGAGCATTGAATATTC-GAAAAATTGCTCGAATGAATGGATTGTCTTGAATACTTTAAGGTACC
131 CCAAGCATGGAATATTCAG-AAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGTACC
22658005 AAAGTAC
195 AAAGTAC
**
22658012 AAGTTTGACAAGTTCGGAAGTTCGTCCCAA-AACCAAGAGAGAAACAATTCAATTCTCACGTAAA
1 AAGTTTGACAAGTTCAAAAGTTCGT-CCAAGAACCAAGAGAGAAAC----C-ATTCTCACGTAAA
*
22658076 TTAGTTTTTAATTCAAAGAC-CAAAACATGTTTACAAAATGACAAAA-TATTTAGACAAAATGAT
60 TAAGTTTTTAATTCAAAGACAC-AAACATGTTTACAAAATGA-AAAACTATTTAGACAAAATGAT
* * * * *
22658139 TCAATTTCCCAAGCATGGAATGTTCAGGAAATTGTTCGAAAGAATGGATCATCTTGAATACTTT
123 GCAACTTCCCAAGCATGGAATATTCAGAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTT
22658203 TAAAGAACCG
Statistics
Matches: 163, Mismatches: 19, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
201 38 0.23
202 4 0.02
205 2 0.01
206 114 0.70
207 5 0.03
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (201 bp):
AAGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACCATTCTCACGTAAATAAGTT
TTTAATTCAAAGACACAAACATGTTTACAAAATGAAAAACTATTTAGACAAAATGATGCAACTTC
CCAAGCATGGAATATTCAGAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGTACCA
AAGTAC
Found at i:22659008 original size:214 final size:216
Alignment explanation
Indices: 22658300--22659429 Score: 1315
Period size: 214 Copynumber: 5.2 Consensus size: 216
22658290 ATACGATGAG
* * * * **
22658300 ATTTTCTGATAAAATTGCTCGAAGGAATGGATTGTCTTAAATAGTTTATGGAATTGAAGTTATAA
1 ATTTTC-GA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * *
22658365 AAGAACTCGTAATAGTTTGACATGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAATAATTCTCA
64 AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCA
* * * *
22658430 CGTAAATAAGTTTTTAATTCAAAGACCAAAAT-TTGATAACAAAATGACAAAATATTTAGACTAA
129 CGTAAATAAGTTTTTAATTCAAAGACC-AAATGTTGTTTACAAAATGACAAACTATTTAGACCAA
*
22658494 ACT-ATGGGATTTCCAGAGCATGGA
193 A-TAATGCGATTTCCAGAGCATGGA
* * * *
22658518 ATGTTCGAAAAATTGCTCGAACGAATGGATCGTCTTGAATTCTTTAAGGAATCGAAGTTATAAAA
1 ATTTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * * *
22658583 TAACTCGTAAAAGTTTGACAATTTC-AGAAGTTCATCCAAGAAC-CA-AGAGAAACAATTCTTAC
66 GAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCAC
22658645 GTAAATAAGTTTTTAATTCAAAGACCAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAAT
130 GTAAATAAGTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
*
22658709 AATGTGATTTCCAGAGCATGG-
195 AATGCGATTTCCAGAGCATGGA
* *
22658730 ATTGTTCGAAAAATTGCTCGAAGGAATGGATTGTCTT-AAGTACTATAAGGAACCGAAGTTATAA
1 ATT-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAACCGAAGTTATAA
* * * * *
22658794 AAGAGCTTGTCAAAGTTTGACAAGTTCAAAAGTTCGTCCAAGAAC-CA-AGAGAAACAATTCTCA
64 AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCA
* *
22658857 CGTAAATAAGTTTTTAATTCAAAGACCAAATCTTGTTTACAAAATAACAAACTATTTAGACCAAA
129 CGTAAATAAGTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * *
22658922 TGATGCAATTTCCCGAGCATGAA
194 TAATGCGATTTCCAGAGCATGGA
** * * * * * *
22658945 ATTTTTAAAAAATTGCTCGAGGGAATGGATCATCTTGAATAGTTTGATGAACCGAATTTATAAAA
1 ATTTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * *
22659010 GAACTTGTAAAAGTTTGACAAATTCGAAACTTCATCCAAGAAC-ATAGAGAGAAACAATTCTCAC
66 GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACTA-AGAGAGAAACAATTCTCAC
* * * *
22659074 GTAAATAAGTTTTTAATTCAAAGACCAACA-GTTGATAACAAAATGAAAAACTATTT--ACAAAA
130 GTAAATAAGTTTTTAATTCAAAGACCAA-ATGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* *
22659136 TGATGCGATTTCCCGAGCATGGA
194 TAATGCGATTTCCAGAGCATGGA
* * * *
22659159 ATATTCGAAAAATTGCTCAAAGGAATGGATCGTCTTCAATACTTTAAGGAACCAAAGTTATAAAA
1 ATTTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * *
22659224 AAACTCGTAAAAGTTTGACAAGTTTGGAAA-TTCGTCTC-AGAACTAATAGAGAAACAATTCTCA
66 GAACTCGTAAAAGTTTGACAAG-TTCGAAAGTTCGTC-CAAGAACTAAGAGAGAAACAATTCTCA
* * * * * *
22659287 TGTAAATAAGTTTTT-ATTCAAAGATCAATTTTTTTTTTTACTAAATGACAAACTATTTAGACCA
129 CGTAAATAAGTTTTTAATTCAAAGACCAA--ATGTTGTTTACAAAATGACAAACTATTTAGACCA
** *
22659351 AATAATGCGATTTCTTGTGCATGGA
192 AATAATGCGATTTCCAGAGCATGGA
** * * *
22659376 AAGTTC-AGAAATTTGCTCGAAGGAATAGATCGTCTTGAATGCTTTAAGGAACCG
1 ATTTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG
22659430 GAGGTCTAAA
Statistics
Matches: 784, Mismatches: 108, Indels: 41
0.84 0.12 0.04
Matches are distributed among these distances:
212 5 0.01
213 199 0.25
214 316 0.40
215 35 0.04
216 153 0.20
217 71 0.09
218 5 0.01
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (216 bp):
ATTTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACG
TAAATAAGTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATA
ATGCGATTTCCAGAGCATGGA
Found at i:22660257 original size:931 final size:932
Alignment explanation
Indices: 22658591--22660355 Score: 2263
Period size: 931 Copynumber: 1.9 Consensus size: 932
22658581 AATAACTCGT
* *
22658591 AAAAGTTTGACAATTTCAGAAGTTCATCCAAGAACCAAGAGAAACAATTCTTACGTAAATAAGTT
1 AAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTT
** * *
22658656 TTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGTGATTTCC
66 TTTAATTCAAAGACCAAACATGTTTACAAAATGACAAAATATTTAGACCAAATAATGTAATTTCC
* * * *** * *
22658721 AGAGCATGGATTGTTCGAAAAATTGCTCGAAGGAATGGATTGTCTTAAGTACTATAAGGAACCGA
131 AGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGAAACATCTTAAGTACTATAAAGAACCAA
* ** * *
22658786 AGTTATAAAAGAGCTTGTCAAAGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAAACAA
196 AGTAATAAAAGAGCTCCTAAAAGTTTGACAAGTTCAAAAGTCCGTCCAAGAACCAAGAGAAACAA
* *
22658851 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAATCTTGTTTACAAAATAACAAACTATTTAG
261 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTGTACAAAATAACAAACTATTTAG
* *
22658916 ACCAAATGATGCAATTTCCCGAGCATGAAATTTTTAAAAAATTGCTCGAGGGAATGGATCATCTT
326 ACCAAA-GATG-AA-TT--CGAGCAT---ATTTTGAAAAAATTGCTCGAAGGAATGGATCATCTT
* *
22658981 GAATAGTTTGATGAACCGAATTTATAAAAGAACTTGTAAAAGTTTGACAAATTCGAAACTTCATC
383 GAATAGTTTGATGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAATTCGAAACTTCATC
*
22659046 CAAGAACATAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAACAGTTGATA
448 CAAGAACATAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATA
*
22659111 ACAAAATGAAAAACTATTTACAAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCT
513 ACAAAATGAAAAAATATTTACAAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCT
* * *
22659176 CAAAGGAATGGATCGTCTTCAATACTTTAAGGAACCAAAGTTATAAAAAAACTCGTAAAAGTTTG
578 CAAAGGAATGGATCATCTTCAATACTTTAAGGAAACAAAGTTATAAAAAAACTCATAAAAGTTTG
* * * * * *
22659241 ACAAGTTTGGAAATTCGTCTCAGAACTAATAGAGAAACAATTCTCATGTAAATAAGTTTTTATTC
643 ACAAGTTCGGAAATTCATCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTC
*** * * * ** * *
22659306 AAAGATCAATTTTTTTTTTTACTAAATGACAAACTATTTAGACCAAATAATGCGATTTCTTGTGC
708 AAAGATCAA-TAACTTTTTTACAAAATGAAAAACTATTTAGACCAAATAATGCAATTTCAAGAGA
**
22659371 ATGGAAAGTTCAGAAATTTGCTCGAAGGAATAGATCGTCTTGAATGCTTTAAGGAACCGGAGGTC
772 ATGGAAAGTTCAGAAAACTGCTCGAAGGAATAGATCGTCTTGAATGCTTTAAGGAACCGGAGGTC
22659436 TAAATTTAAACTAAATGATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATG
837 TAAATTTAAACTAAATGATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATG
22659501 GATCGTCTTGAATACTTTAAGGTACCAAAGA
902 GATCGTCTTGAATACTTTAAGGTACCAAAGA
* * * * *
22659532 AAAAGTTTGACAAGTTCGGAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCGCGTAAATGAG
1 AAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAAG
*
22659597 TTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAAATATTTAGA-CAGAATGAT-TCAA
64 TTTTTAATTCAAAGACC-AAACATGTTTACAAAATGACAAAATATTTAGACCA-AATAATGT-AA
* * *
22659660 TTTCCCGAGCATGGAATGTTCGAAAAATTGTTCGAAAGAATGAAACATCTTCAA-TACTTTTAAA
126 TTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGAAACATCTT-AAGTAC-TATAAA
* * *** *
22659724 GAACCAAAGTAATAAAGGATCTCCTAAAAGTTTGACAAGTTTTGAAGTCCGTCCAAGAACTAAGA
189 GAACCAAAGTAATAAAAGAGCTCCTAAAAGTTTGACAAGTTCAAAAGTCCGTCCAAGAACCAAGA
* **
22659789 GAAACAATTCTCACGTAAATACA-TTTTTAATTCAAAGACCAAAACTTGTGTAGAAAATGGCAAA
254 GAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAACTTGTGTACAAAATAACAAA
* * *
22659853 TTATTTAGACC-AA-ATG-A-T-GAG-AT-TTTCTGAGAAAATTGCTCGAAGGAATGGATCGTCT
318 CTATTTAGACCAAAGATGAATTCGAGCATATTT-TGAAAAAATTGCTCGAAGGAATGGATCATCT
* * ** * *
22659911 TGAATAGTTT-ATGGAATCGAAGTTATAAAAGAACTCGTAATAGTTTGACATGTTCGGAAGTGT-
382 TGAATAGTTTGAT-GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAATTCGAAACT-TC
* * *
22659974 GTCCAAGAAC-TAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTTAAAGACCAAAAGTT
445 ATCCAAGAACAT-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
** ** * * *
22660038 GATAACAAAAT-AACAAAATATTTAGACTAACCT-ATGCGATTTCTTGAGCATGGAATGTTTGGA
509 GATAACAAAATGAA-AAAATATTT--AC-AAAATGATGCGATTTCCCGAGCATGGAATATTCGAA
* * * *
22660101 AAATTGCTCGAAGGAATGGATCATCTTGAATTCTTTAAGGAAACAAAGTTATAAAAGAACTCAT-
570 AAATTGCTCAAAGGAATGGATCATCTTCAATACTTTAAGGAAACAAAGTTATAAAAAAACTCATA
* * * *
22660165 TATGTTTGACAAGTTCGGAAGTTCATCTAAGAACAAAGAGTGAAACAATTCTCACGTAAATAAGT
635 AAAGTTTGACAAGTTCGGAAATTCATCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
*
22660230 TTTTAATTCAAAGA-CACA-AACTTTTTTACAAAATGAAAAACTATTTAGACCAAATGATGCAAT
700 TTTT-ATTCAAAGATCA-ATAACTTTTTTACAAAATGAAAAACTATTTAGACCAAATAATGCAAT
* ** * *
22660293 TTCAAGAGAATGGAATGTTTGGAAAACTGCTCGAAGGAATTGATCGTCTTGAATGGTTTAAGG
763 TTCAAGAGAATGGAAAGTTCAGAAAACTGCTCGAAGGAATAGATCGTCTTGAATGCTTTAAGG
22660356 TAACAAAGTA
Statistics
Matches: 707, Mismatches: 99, Indels: 46
0.83 0.12 0.05
Matches are distributed among these distances:
930 8 0.01
931 244 0.35
932 62 0.09
933 94 0.13
934 5 0.01
935 3 0.00
938 1 0.00
940 1 0.00
941 32 0.05
942 4 0.01
943 43 0.06
944 83 0.12
945 126 0.18
946 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (932 bp):
AAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTT
TTTAATTCAAAGACCAAACATGTTTACAAAATGACAAAATATTTAGACCAAATAATGTAATTTCC
AGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGAAACATCTTAAGTACTATAAAGAACCAA
AGTAATAAAAGAGCTCCTAAAAGTTTGACAAGTTCAAAAGTCCGTCCAAGAACCAAGAGAAACAA
TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTGTACAAAATAACAAACTATTTAG
ACCAAAGATGAATTCGAGCATATTTTGAAAAAATTGCTCGAAGGAATGGATCATCTTGAATAGTT
TGATGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAATTCGAAACTTCATCCAAGAACA
TAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATG
AAAAAATATTTACAAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCTCAAAGGAA
TGGATCATCTTCAATACTTTAAGGAAACAAAGTTATAAAAAAACTCATAAAAGTTTGACAAGTTC
GGAAATTCATCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTCAAAGATCA
ATAACTTTTTTACAAAATGAAAAACTATTTAGACCAAATAATGCAATTTCAAGAGAATGGAAAGT
TCAGAAAACTGCTCGAAGGAATAGATCGTCTTGAATGCTTTAAGGAACCGGAGGTCTAAATTTAA
ACTAAATGATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTT
GAATACTTTAAGGTACCAAAGA
Found at i:22660263 original size:215 final size:216
Alignment explanation
Indices: 22659883--22660661 Score: 631
Period size: 215 Copynumber: 3.7 Consensus size: 216
22659873 GATTTTCTGA
* * * *
22659883 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATAGTTTATGGAATCGAAGTTATAAAAGAACTCG
1 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAAACAAAGTTATAAAAGAACTCA
* * * *
22659948 TAATAGTTTGACATGTTCGGAAGTGTGTCCAAGAACTAAGAGAGAAACAATTCTCATGTAAATAA
66 TAATAGTTTGACAAGTTCGGAAGTGTATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
22660013 GTTTTTAATTTAAAGACCAAAAGTTGATAACAAAAT-AACAAAATATTTAGACTAACCT-ATGCG
131 GTTTTTAATTCAAAGACCAAAACTTGATAACAAAATGAA-AAAATATTTAGACCAA-ATGATGCA
** *
22660076 ATTTCTTGAGCATGGAATGTTTG
194 ATTTCAAGAGAATGGAATGTTTG
* **
22660099 GAAAATTGCTCGAAGGAATGGATCATCTTGAATTCTTTAAGGAAACAAAGTTATAAAAGAACTCA
1 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAAACAAAGTTATAAAAGAACTCA
* * *
22660164 TTAT-GTTTGACAAGTTCGGAAGT-TCATCTAAGAACAAAGAGTGAAACAATTCTCACGTAAATA
66 TAATAGTTTGACAAGTTCGGAAGTGT-ATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
** * *
22660227 AGTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGAAAAACTATTTAGACCAAATGATGCA
130 AGTTTTTAATTCAAAGACCA-AAACTTGATAACAAAATGAAAAAATATTTAGACCAAATGATGCA
22660291 ATTTCAAGAGAATGGAATGTTTG
194 ATTTCAAGAGAATGGAATGTTTG
* * * * * *
22660314 GAAAACTGCTCGAAGGAATTGATCGTCTTGAATGGTTTAAGGTAACAAAG---TAAAAG-TCTGA
1 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAAACAAAGTTATAAAAGAACTCA
* * * * * *
22660375 -CA-AG-TTGAAAAGTTC---A-TCG--T---AGAACCAAGAGACAAACAGTTCTCACGTAAATG
66 TAATAGTTTGACAAGTTCGGAAGT-GTATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
** ** ** * * ** * *
22660428 AGTTTTTAATTCAAAGAGTAAAAAATCTTTACAAAATGACAAGCTATTTAGACAAAATGATTCAA
130 AGTTTTTAATTCAAAGACCAAAACTTGATAACAAAATGAAAAAATATTTAGACCAAATGATGCAA
* * * *
22660493 TTTCCCA-AGCATGGAGTGTTCG
195 TTT-CAAGAGAATGGAATGTTTG
* * * * * * * ** *
22660515 AAAAAATT-TTCGAAGGAATGGGTTGTCTTGAATACTTTTAAGGAACCAAAGTAATAAGGGATCT
1 -GAAAATTGCTCGAAGGAATGGATCGTCTTGAATA-GTTTAAGGAAACAAAGTTATAAAAGAACT
* ** ** *
22660579 CTTGAA-AGTTTGACAAGTTCTTAAGT-TCATCCAAGAACCCA-AGAGAAACAATTCTCACGAAA
64 CAT-AATAGTTTGACAAGTTCGGAAGTGT-ATCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
*
22660641 ATACA-TTTTTAAATCAAAGAC
127 ATA-AGTTTTTAATTCAAAGAC
22660662 TGATATGAGC
Statistics
Matches: 458, Mismatches: 76, Indels: 58
0.77 0.13 0.10
Matches are distributed among these distances:
201 119 0.26
202 21 0.05
204 1 0.00
205 5 0.01
206 4 0.01
208 3 0.01
209 20 0.04
210 2 0.00
211 3 0.01
212 7 0.02
213 1 0.00
214 5 0.01
215 162 0.35
216 97 0.21
217 8 0.02
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (216 bp):
GAAAATTGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAAACAAAGTTATAAAAGAACTCA
TAATAGTTTGACAAGTTCGGAAGTGTATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAA
GTTTTTAATTCAAAGACCAAAACTTGATAACAAAATGAAAAAATATTTAGACCAAATGATGCAAT
TTCAAGAGAATGGAATGTTTG
Found at i:22660530 original size:201 final size:201
Alignment explanation
Indices: 22660183--22660547 Score: 466
Period size: 201 Copynumber: 1.8 Consensus size: 201
22660173 ACAAGTTCGG
**
22660183 AAGTTCATCTAAGAACAAAGAGTGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACA
1 AAGTTCATCTAAGAACAAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACA
** * * *
22660248 AACTTTTTTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTCAAGAGAATGGAATGTTT
66 AAAATCTTTACAAAATGAAAAACTATTTAGACAAAATGATGCAATTTCAAGAGAATGGAATGTTC
* * *
22660313 GGAAAACTGCTCGAAGGAATTGATCGTCTTGAATGGTTTAAGGTAACAAAGTAAAAGTCTGACAA
131 GAAAAAATGCTCGAAGGAATGGATCGTCTTGAATGGTTTAAGGTAACAAAGTAAAAGTCTGACAA
22660378 GTTGAA
196 GTTGAA
* * * *
22660384 AAGTTCATCGT-AGAACCAAGAGACAAACAGTTCTCACGTAAATGAGTTTTTAATTCAAAGAGTA
1 AAGTTCATC-TAAGAACAAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CA
* * * * * *
22660448 -AAAAATCTTTACAAAATGACAAGCTATTTAGACAAAATGATTCAATTTCCCA-AGCATGGAGTG
64 CAAAAATCTTTACAAAATGAAAAACTATTTAGACAAAATGATGCAATTT-CAAGAGAATGGAATG
** * *
22660511 TTCGAAAAAATTTTCGAAGGAATGGGTTGTCTTGAAT
128 TTCGAAAAAATGCTCGAAGGAATGGATCGTCTTGAAT
22660548 ACTTTTAAGG
Statistics
Matches: 137, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
201 133 0.97
202 4 0.03
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (201 bp):
AAGTTCATCTAAGAACAAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACA
AAAATCTTTACAAAATGAAAAACTATTTAGACAAAATGATGCAATTTCAAGAGAATGGAATGTTC
GAAAAAATGCTCGAAGGAATGGATCGTCTTGAATGGTTTAAGGTAACAAAGTAAAAGTCTGACAA
GTTGAA
Found at i:22660629 original size:417 final size:412
Alignment explanation
Indices: 22659439--22660661 Score: 1214
Period size: 417 Copynumber: 2.9 Consensus size: 412
22659429 GGAGGTCTAA
* * ***
22659439 ATTTAAACTAAATGATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGAT
1 ATTTAGACCAAATGATGCAATTT--CGAG-ATGGAATGTTTGGAAAATTGCTCGAAGGAATGGAT
* * * * * * *
22659504 CGTCTTGAATACTTTAAGGTACCAAAGAAAAAGTTTGACAAGTTCG-GAAGTTCGTCCTAGAACC
63 CGTCTTGAATAGTTTAAGGTAACAAAGTAAAAGTCTGACAAGTT-GAAAAGTTCATCGTAGAACC
* *
22659568 AAGAGAGAAACAATTCTCGCGTAAATGAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATG
127 AAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAAAATGTTTACAAAATG
* *
22659633 ACAAAATATTTAGACAGAATGATTCAATTTCCCGAGCATGGAATGTTCGAAAAATTGTTCGAAAG
192 ACAAAATATTTAGACAAAATGATTCAATTTCCCGAGCATGGAATGTTCGAAAAATTGTTCGAAGG
* * * * *
22659698 AATGAAACATCTTCAATACTTTTAAAGAACCAAAGTAATAAAGGATCTCCTAAAAGTTTGACAAG
257 AATGGATCATCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCT-CTTAAAGTTTGACAAG
* * *
22659763 TT-TTGAAGTCCGTCCAAGAACTAAGAGAAACAATTCTCACGTAAATACATTTTTAATTCAAAGA
321 TTCTT-AAGTTCATCCAAGAACAAAGAGAAACAATTCTCACGTAAATACATTTTTAATTCAAAGA
* ** *
22659827 CCAAAACTTGTGTAGAAAATGGCAAATT
385 CCAAAACTTGTGTACAAAATGAAAAACT
22659855 ATTTAGACC-AA--ATG--A--T-GAGAT----T-TTCTGAGAAAATTGCTCGAAGGAATGGATC
1 ATTTAGACCAAATGATGCAATTTCGAGATGGAATGTT-TG-GAAAATTGCTCGAAGGAATGGATC
* * * * *
22659907 GTCTTGAATAGTTTATGG-AATCGAAGTTATAAAAGAACTCGTA-ATAGTTTGACATGTTCGGAA
64 GTCTTGAATAGTTTAAGGTAA-CAAAG---TAAAAG-TCT-G-ACA-AG-TTGAAAAGTTC---A
* * * * *
22659970 GTGTGTCCAAGAACTAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTTAAAGACCAAAA
117 -T-CGT---AGAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAA
** * * * ** * * ** *
22660035 GTTGATAACAAAATAACAAAATATTTAGACTAACCT-ATGCGATTTCTTGAGCATGGAATGTTTG
177 AATGTTTACAAAATGACAAAATATTTAGAC-AAAATGATTCAATTTCCCGAGCATGGAATGTTCG
* * * * * * *
22660099 GAAAATTGCTCGAAGGAATGGATCATCTTGAATTC-TTTAAGGAAACAAAGTTATAAAAGAACTC
241 AAAAATTGTTCGAAGGAATGGATCATCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTC
* ** *
22660163 ATT-ATGTTTGACAAGTTCGGAAGTTCATCTAAGAACAAAGAGTGAAACAATTCTCACGTAAATA
306 -TTAAAGTTTGACAAGTTCTTAAGTTCATCCAAGAACAAAGA--GAAACAATTCTCACGTAAATA
* *
22660227 -AGTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGAAAAACT
368 CA-TTTTTAATTCAAAGACCA-AAACTTGTGTACAAAATGAAAAACT
* *
22660272 ATTTAGACCAAATGATGCAATTTCAAGAGAATGGAATGTTTGGAAAACTGCTCGAAGGAATTGAT
1 ATTTAGACCAAATGATGCAATTTC--GAG-ATGGAATGTTTGGAAAATTGCTCGAAGGAATGGAT
*
22660337 CGTCTTGAATGGTTTAAGGTAACAAAGTAAAAGTCTGACAAGTTGAAAAGTTCATCGTAGAACCA
63 CGTCTTGAATAGTTTAAGGTAACAAAGTAAAAGTCTGACAAGTTGAAAAGTTCATCGTAGAACCA
* * ** *
22660402 AGAGACAAACAGTTCTCACGTAAATGAGTTTTTAATTCAAAGAGTAAAAAATCTTTACAAAATGA
128 AGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAAAATGTTTACAAAATGA
** * *
22660467 CAAGCTATTTAGACAAAATGATTCAATTTCCCAAGCATGGAGTGTTCGAAAAAATT-TTCGAAGG
193 CAAAATATTTAGACAAAATGATTCAATTTCCCGAGCATGGAATGTTCG-AAAAATTGTTCGAAGG
* ** *
22660531 AATGGGTTGTCTTGAATACTTTTAAGGAACCAAAGTAATAAGGGATCTCTTGAAAGTTTGACAAG
257 AATGGATCATCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCTT-AAAGTTTGACAAG
* * *
22660596 TTCTTAAGTTCATCCAAGAACCCAAGAGAAACAATTCTCACGAAAATACATTTTTAAATCAAAGA
321 TTCTTAAGTTCATCCAAGAA-CAAAGAGAAACAATTCTCACGTAAATACATTTTTAATTCAAAGA
22660661 C
385 C
22660662 TGATATGAGC
Statistics
Matches: 641, Mismatches: 113, Indels: 104
0.75 0.13 0.12
Matches are distributed among these distances:
400 2 0.00
401 2 0.00
402 43 0.07
405 7 0.01
406 4 0.01
407 2 0.00
408 4 0.01
409 8 0.01
411 1 0.00
413 4 0.01
414 1 0.00
415 36 0.06
416 149 0.23
417 255 0.40
418 33 0.05
419 7 0.01
420 4 0.01
421 1 0.00
422 1 0.00
424 10 0.02
425 3 0.00
426 2 0.00
427 5 0.01
428 8 0.01
431 42 0.07
432 5 0.01
433 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (412 bp):
ATTTAGACCAAATGATGCAATTTCGAGATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGT
CTTGAATAGTTTAAGGTAACAAAGTAAAAGTCTGACAAGTTGAAAAGTTCATCGTAGAACCAAGA
GAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAAAATGTTTACAAAATGACAA
AATATTTAGACAAAATGATTCAATTTCCCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGAATG
GATCATCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCTTAAAGTTTGACAAGTTCTT
AAGTTCATCCAAGAACAAAGAGAAACAATTCTCACGTAAATACATTTTTAATTCAAAGACCAAAA
CTTGTGTACAAAATGAAAAACT
Found at i:22661235 original size:79 final size:79
Alignment explanation
Indices: 22661123--22661278 Score: 242
Period size: 79 Copynumber: 2.0 Consensus size: 79
22661113 ACTAATTTAA
* * * *
22661123 TTTTAACTCTTGTAGGGAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGTTAAAAAG
1 TTTTAACTCTTGTAGGGAAACCAATGACTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
*
22661188 GCATGGCAATTTCGT
66 GCAGGGC-ATTTCGT
*
22661203 TTTTAACTCTTGTA-GGAAACCAATGACTCATGTCTCTTCATTAGGATCTGATGTAGCTGAAAAG
1 TTTTAACTCTTGTAGGGAAACCAATGACTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
22661267 GCAGGGCATTTC
66 GCAGGGCATTTC
22661279 TCCTTAATGA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
78 5 0.07
79 51 0.73
80 14 0.20
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (79 bp):
TTTTAACTCTTGTAGGGAAACCAATGACTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
GCAGGGCATTTCGT
Found at i:22661808 original size:47 final size:48
Alignment explanation
Indices: 22661722--22661852 Score: 219
Period size: 47 Copynumber: 2.8 Consensus size: 48
22661712 AACGAATTTT
* *
22661722 AACAAAGATGCATTTAACAAACAAAACAGTTAATAATGCAGATTACTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTACTA
*
22661770 AACAAAGATGCATTTAA-AAACAAAACACTTAATGATGCAGATTATTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTACTA
*
22661817 AACAAAGATGCATTTAACAAAAAAAACACTTAATGA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATGA
22661853 AGCATAAATA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 44 0.56
48 34 0.44
ACGTcount: A:0.53, C:0.14, G:0.10, T:0.23
Consensus pattern (48 bp):
AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTACTA
Found at i:22663342 original size:188 final size:188
Alignment explanation
Indices: 22663025--22663590 Score: 1048
Period size: 188 Copynumber: 3.0 Consensus size: 188
22663015 ATGTCCAATT
*
22663025 AAGCCTCCCTCGTGGGCTTCTTTTACAAGTAGCTTTCAAACAGAACTCCTTGATATAAAAAGCTT
1 AAGCCTCCCTCGTGGGCTTCTTTTACAAGTAGCTTTCAAACAGAACTCCTTGATATACAAAGCTT
22663090 ATTTTCTCGAAAAAGAAATCCATCATGCCTAAAAAACTTACTAAAAGCATCATTTTCGCAAGCTA
66 ATTTTCTCGAAAAAGAAATCCATCATGCCTAAAAAACTTACTAAAAGCATCATTTTCGCAAGCTA
*
22663155 CAAAGACATTGCCAAAATCAAAGTCATGTTTATACAAATCTTTTATGTACTCAAATCC
131 CAAAGACATTGCCAAAATCAAAGTCATGTTCATACAAATCTTTTATGTACTCAAATCC
*
22663213 AAGCCTCCCTCGTGGGCTTCTTTTGCAAGTAGCTTTCAAACAGAACTCCTTGATATACAAAGCTT
1 AAGCCTCCCTCGTGGGCTTCTTTTACAAGTAGCTTTCAAACAGAACTCCTTGATATACAAAGCTT
*
22663278 ATTTTCTCGAAAAACAAATCCATCATGCCTAAAAAACTTACTAAAAGCATCATTTTCGCAAGCTA
66 ATTTTCTCGAAAAAGAAATCCATCATGCCTAAAAAACTTACTAAAAGCATCATTTTCGCAAGCTA
22663343 CAAAGACATTGCCAAAATCAAAGTCATGTTCATACAAATCTTTTATGTACTCAAATCC
131 CAAAGACATTGCCAAAATCAAAGTCATGTTCATACAAATCTTTTATGTACTCAAATCC
22663401 AAGCCTCCCTCGTGGGCTTCTTTTACAAGTAGCTTTCAAACAGAA---CTTGATATACAAAGCTT
1 AAGCCTCCCTCGTGGGCTTCTTTTACAAGTAGCTTTCAAACAGAACTCCTTGATATACAAAGCTT
*
22663463 ATTTTCTCGAAAAAGAAATCCATCATGCCTAAAAAACTTACTAAAAGCATCATTTTTCGCAAGTT
66 ATTTTCTCGAAAAAGAAATCCATCATGCCTAAAAAACTTACTAAAAGCATCA-TTTTCGCAAGCT
*
22663528 GCAAAGACATTGCCAAAATCAAAGTCATGTTCATACAAATCTTTTATGTACTCAAATCC
130 ACAAAGACATTGCCAAAATCAAAGTCATGTTCATACAAATCTTTTATGTACTCAAATCC
22663587 AAGC
1 AAGC
22663591 AATTTAGCAT
Statistics
Matches: 369, Mismatches: 8, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
185 68 0.18
186 73 0.20
188 228 0.62
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (188 bp):
AAGCCTCCCTCGTGGGCTTCTTTTACAAGTAGCTTTCAAACAGAACTCCTTGATATACAAAGCTT
ATTTTCTCGAAAAAGAAATCCATCATGCCTAAAAAACTTACTAAAAGCATCATTTTCGCAAGCTA
CAAAGACATTGCCAAAATCAAAGTCATGTTCATACAAATCTTTTATGTACTCAAATCC
Found at i:22664148 original size:80 final size:80
Alignment explanation
Indices: 22664013--22664165 Score: 256
Period size: 80 Copynumber: 1.9 Consensus size: 80
22664003 ACATTAATCA
* *
22664013 TTTTAACTCTTGTCAGGAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTA-CTTAAAAA
1 TTTTAACTCTTGTCAGGAAGCCAATGAGTCATGTCTCTTCATTAGGATCTAATGTAGC-TAAAAA
22664077 GGCATGGCAATTTTGT
65 GGCATGGCAATTTTGT
22664093 TTTTAACTCTTGT-AGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTAATGTAGCTAAAAA
1 TTTTAACTCTTGTCAGG-AAGCCAATGAGTCATGTCTCTTCATTAGGATCTAATGTAGCTAAAAA
22664157 GGCATGGCA
65 GGCATGGCA
22664166 TTTCTCCTTA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
79 3 0.04
80 65 0.94
81 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (80 bp):
TTTTAACTCTTGTCAGGAAGCCAATGAGTCATGTCTCTTCATTAGGATCTAATGTAGCTAAAAAG
GCATGGCAATTTTGT
Found at i:22664660 original size:48 final size:45
Alignment explanation
Indices: 22664608--22664751 Score: 139
Period size: 47 Copynumber: 3.0 Consensus size: 45
22664598 GCTGATGCAT
* *
22664608 TAATGCAAGGCATTTAACAAAGATGCATTTAATAAGCAAAACAGTTAA
1 TAATGC-AGG-ATTTAACAAAGATGCATTTAA-AAACAAAACACTTAA
*
22664656 TAATGCA-GATTACTAAACAAAGATGCACTTAAAAACAAAACACTTAA
1 TAATGCAGGATT--T-AACAAAGATGCATTTAAAAACAAAACACTTAA
* *
22664703 TGATGCA-GATTATTAAACAAAGATGCATTTAACAAAAAAAACACTTAA
1 TAATGCAGGA-T-TT-AACAAAGATGCATTTAA-AAACAAAACACTTAA
22664751 T
1 T
22664752 GAAGCATAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
45 3 0.04
46 1 0.01
47 41 0.49
48 38 0.45
49 1 0.01
ACGTcount: A:0.51, C:0.14, G:0.11, T:0.24
Consensus pattern (45 bp):
TAATGCAGGATTTAACAAAGATGCATTTAAAAACAAAACACTTAA
Found at i:22664710 original size:47 final size:48
Alignment explanation
Indices: 22664623--22664753 Score: 192
Period size: 47 Copynumber: 2.8 Consensus size: 48
22664613 CAAGGCATTT
* * * *
22664623 AACAAAGATGCATTTAATAAGCAAAACAGTTAATAATGCAGATTACTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTACTA
* *
22664671 AACAAAGATGCACTTAA-AAACAAAACACTTAATGATGCAGATTATTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTACTA
*
22664718 AACAAAGATGCATTTAACAAAAAAAACACTTAATGA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATGA
22664754 AGCATAAATA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
47 42 0.56
48 33 0.44
ACGTcount: A:0.53, C:0.14, G:0.11, T:0.23
Consensus pattern (48 bp):
AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTACTA
Found at i:22665493 original size:216 final size:216
Alignment explanation
Indices: 22665116--22667262 Score: 1689
Period size: 201 Copynumber: 10.2 Consensus size: 216
22665106 ATTTCCCGAG
* * **
22665116 AAAATTGCTCGAAGGAATGCATCATCCAGAATACTTTAAGGAA-CATAAGTTATAAAAGAACTAG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTAG
* * * *
22665180 TAAAAAGTTTAATAAGTTCGAAAGTTCATCCTAGAACCAATAGAGAATCAATTCTCACGTAAAAA
65 TAAAAAGTTTAACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAA
* * * **
22665245 GTGTTTAATTTAAAGACCAAAACCTGTTTACAAAATGATAAACTATTTAGAACAAATGATTTGAT
130 GTGTTTAATTCAAAGAACAAAACCTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCGAT
* *
22665310 TACTCGAGCATGGAATGTTTAA
195 TACACGAGAATGGAATGTTTAA
* *
22665332 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAGGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * *
22665397 -AAAAGTTTGACCAA-TTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATA
66 AAAAAGTTT-AACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA-A
* * * *
22665460 AGTTTTTAATTCAAAGATAC-AAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
129 AGTGTTTAATTCAAAGA-ACAAAACCTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCG
* * *
22665524 ATTTCACGAGAATGGAATTTTTGA
193 ATTACACGAGAATGGAATGTTTAA
* * **
22665548 AAAATTGCTCGAAGGAATTGATAGTCTTGAATACTTTAAGGTGCCAAAG---TAAAAG---T--T
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * * * * * *
22665605 ----TG-AT-A-AA-TTCGGAACTTCGTCCCAGAACCAAGAGAGAAACAATTCTCAGGT-AAATG
66 AAAAAGTTTAACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAG
* * * * * * *
22665661 TGTTTTTAATTCAAAGACCAAAACATGTTTATAGAATGACAAAATATTTAG-ACAAAATGATTCA
131 TG--TTTAATTCAAAGAACAAAACCTGTTTACAAAATGACAAACTATTTAGAAC-AAATGATGCG
* * * ***
22665725 ATTTCTCGAGCATGGAATGTTCGG
193 ATTACACGAGAATGGAATGTTTAA
* * * * *
22665749 AAAATTG-TTGAAAGGAATGGATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTC
1 AAAATTGCTCG-AAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCAAAGTTATAAAAGAACTA
* * ** * * *
22665813 GT-GAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCCA-AGAGAAACAATTCTCACGTACAT
64 GTAAAAAGTTTAACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA-AA
* * * * * * *
22665876 ACGTTTTTAATTTAAA-AACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGAAGC
128 AAGTGTTTAATTCAAAGAA-CAAAACCTGTTTACAAAATGACAAACTATTTAGAACAAATGATGC
* *
22665940 GATTTC-C-------CAA-G-----
192 GATTACACGAGAATGGAATGTTTAA
* * * * * *
22665951 AAAATTGCTCGAAGGAATGCATCTTCTTGTATGCTTTAACGAA-CAGAAGTTATAAATGAACTAG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTAG
* * * ** *
22666015 T-AAAAGTTTGATAAGTTCGGAAGTTTGTTCCAA-AACCAATAGAGAAACAATTCTCACGTAAAA
65 TAAAAAGTTTAACAAGTTCGAAAG-TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAA
* * * ***
22666078 AGTGTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTAAA
129 AGTGTTTAATTCAAAGAACAAAACCTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCGA
** * * *
22666143 TTACTTGAGCATTGAATGTTCAA
194 TTACACGAGAATGGAATGTTTAA
* * ** * *
22666166 AAAATTGCTCGAAGGAATGGATCGTATTGAATTCTTTAAGGAACCGTAGTCATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * *
22666231 -AAAAGTTTGACAAGTTCGAAAGTTCATCCAAAAACCAAGAGTGAAACAATTCTCACGTAAATAA
66 AAAAAGTTTAACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA-AA
* * * *
22666295 GTTTTTAA-T-AAAG-ACACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
130 GTGTTTAATTCAAAGAACA-AAACCTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCGA
* *
22666357 TTTCACGAGAATGGAATGTTTAG
194 TTACACGAGAATGGAATGTTTAA
* * ** *
22666380 AAAACTGCTCGAAGGAATTGATCGTCTTGAATGGTTTAA-G-------G---T--AACAA--AGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * * *
22666430 -AAAAGTTTGACAAGTTCGGAAGTTCATCCCAGAACCAAGAGAGAAACAATTCTCACATAAATGA
66 AAAAAGTTTAACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA-AA
* * ** * * * * *
22666494 GTTTTTAATTCAAGGAGTAAAACATCTTTATAAAATGACAAACTATTTAG-ACAAAATGATTCAA
130 GTGTTTAATTCAAAGAACAAAACCTGTTTACAAAATGACAAACTATTTAGAAC-AAATGATGCGA
* * * * * *
22666558 TTTCCCGAGCATGGAGTGGTCAA
194 TTACACGAGAATGGAATGTTTAA
* * * *
22666581 AAAATT-TTCGAAGGAATGGATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCA
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCAAAGTTATAAAAGAACT-A
* * ** * * *
22666645 -T-GAAAGTTTGACAAGTTCTTAAGTTCATCCAAGAGCCCA-AGAGAAACAATTCTCATGTAAAT
64 GTAAAAAGTTTAACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA-
* * * * ** * * * **
22666707 ATGTTTTTAATTCAAAGACCAAAACTTGTTTTTAAAATGAGAAACTATTTAGACCAAATGAAGTA
128 AAGTGTTTAATTCAAAGAACAAAACCTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCG
*
22666772 ATTTC-C-----T-G-A-G-----
193 ATTACACGAGAATGGAATGTTTAA
* * *
22666782 AAAATTGCTCGAAGGAGTGCATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * * * *
22666847 -AAAGGTTTGACAAGTTCGAAAGTTCGTCCCAGAACCAATACAGAAACAATTCTCACGTAAAAAG
66 AAAAAGTTTAACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAG
* * * * *
22666911 TTTTTAATTTAAAG-ACTGAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGAT
131 TGTTTAATTCAAAGAAC-AAAACCTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCGAT
* * * * *
22666975 TACCCGAGTA-GGAATATTCAG
195 TACACGAGAATGGAATGTTTAA
* *
22666996 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAGGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * *
22667061 -AAAAGTTTAACAAGTTCGGAAGTTCGTCAAAGAACCAAGAGAGAAACAATTCTGACGTAAATAA
66 AAAAAGTTTAACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA-AA
* * * * *
22667125 GT-TTCTAATTCAAAG-ACACAAACTTTTTTTATAAAATGACAAACTATTTAGACCAAATGATAC
130 GTGTT-TAATTCAAAGAACA-AAAC-CTGTTTACAAAATGACAAACTATTTAGAACAAATGATGC
* **
22667188 GATTTCACGAGAATGGAATGTTCGA
192 GATTACACGAGAATGGAATGTTTAA
* * * *
22667213 AAAATTGCTCGAAGGAATTGATCATCTTGAATACTTTAAGGTACTAAAGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGT
22667263 AAAAAAGTTT
Statistics
Matches: 1571, Mismatches: 263, Indels: 193
0.78 0.13 0.10
Matches are distributed among these distances:
199 71 0.05
200 35 0.02
201 428 0.27
202 113 0.07
203 3 0.00
204 1 0.00
205 6 0.00
206 2 0.00
207 2 0.00
208 6 0.00
209 4 0.00
210 3 0.00
212 1 0.00
213 9 0.01
214 220 0.14
215 248 0.16
216 337 0.21
217 78 0.05
218 4 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
AAAAAGTTTAACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAG
TGTTTAATTCAAAGAACAAAACCTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCGATT
ACACGAGAATGGAATGTTTAA
Found at i:22665859 original size:417 final size:415
Alignment explanation
Indices: 22665182--22667310 Score: 2283
Period size: 417 Copynumber: 5.1 Consensus size: 415
22665172 AGAACTAGTA
* * * * * * *
22665182 AAAAGTTTAATAAGTTCGAAAGTTCATCCTAGAACCAATAGAGAATCAATTCTCACGTAAAAAGT
1 AAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGT-AAAAGT
* **
22665247 G--TTTAATTTAAAGACCAAAACCTGTTTACAAAATGATAAACTATTTAGA-ACAAATGATTTGA
65 GTTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACA-AAATGATTCAA
*
22665309 TTACTCGAGCATGGAATGTTTAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
129 TTACTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* **
22665374 ACCAAAGTTATAAAGGAACTCGTAAAAGTTTGACCAA-TTCGAAAGTTCGTCCAAGAACTAAGAG
194 ACCAAAGTAATAAAGGAACTCGTAAAAGTTTGA-CAAGTTCGAAAGTTCGTCCAAGAACCCA-AG
22665438 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATACAAACTTTTTTACAAAATGACAAA
257 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-ACAAACTTTTTTACAAAATGACAAA
* *
22665503 CTATTTAGACCAAATGATGCGATTTCACGAGAATGGAATTTTTGAAAAATTGCTCGAAGGAATTG
321 CTATTTAGACCAAATGATGCGATTTCACGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATTG
*
22665568 ATAGTCTTGAATACTTTAAGGTGCCAAAGT
386 ATAGTCTTGAATACTTTAAGGTACCAAAGT
* * * * *
22665598 AAAAGTTTGATAAATTCGGAACTTCGTCCCAGAACCAAGAGAGAAACAATTCTCAGGTAAATGTG
1 AAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAAAGTG
* * * * *
22665663 TTTTTAATTCAAAGACCAAAACATGTTTATAGAATGACAAAATATTTAGACAAAATGATTCAATT
66 TTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACAAAATGATTCAATT
* ** *
22665728 TCTCGAGCATGGAATGTTCGGAAAATTG-TTGAAAGGAATGGATCGTCTTGAATACTTTTAAGGA
131 ACTCGAGCATGGAATGTTCAAAAAATTGCTCG-AAGGAATGGATCGTCTTGAATAC-TTTAAGGA
* * **
22665792 ACCAAAGTAATAAAGGATCTCGTGAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCCAAGAG
194 ACCAAAGTAATAAAGGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCCAAGAG
* * * * *
22665857 AAACAATTCTCACGTACATACGTTTTTAATTTAAA-AACCAAAACTTGTTTAGAAAATGACAAAC
259 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAA-C-AAACTTTTTTACAAAATGACAAAC
* * * * * * * *
22665921 TATTTAGACCAAATGAAGCGATTTCCCAAGAA---AATTGCTCGAAGGAATGCATCTTCTTGTAT
322 TATTTAGACCAAATGATGCGATTTCACGAGAATGGAA-TGTTCGAA--AA---AT-TGCTCGAAG
* * * * * * * *
22665983 G-CTTTA-ACGAAC-AGAAGT--TATAA-ATGAAC-TAGT
380 GAATTGATA-G-TCTTGAA-TACTTTAAGGT-ACCAAAGT
* * * * *
22666016 AAAAGTTTGATAAGTTCGGAAGTTTGTTCCAAAACCAATAGAGAAACAATTCTCACGTAAAAAGT
1 AAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGT-AAAAGT
* *
22666081 G--TTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTAAAT
65 GTTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACAAAATGATTCAAT
* * * *
22666144 TACTTGAGCATTGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTATTGAATTCTTTAAGGAA
130 TACTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
** * * * *
22666209 CCGTAGTCATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAA-AAACCAAGAGT
195 CCAAAGTAATAAAGGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCCAAGA--
22666273 GAAACAATTCTCACGTAAATAAGTTTTTAA-T-AAAGACACAAACTTTTTTACAAAATGACAAAC
258 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-ACAAACTTTTTTACAAAATGACAAAC
* *
22666336 TATTTAGACCAAATGATGCGATTTCACGAGAATGGAATGTT-TAGAAAACTGCTCGAAGGAATTG
322 TATTTAGACCAAATGATGCGATTTCACGAGAATGGAATGTTCGA-AAAATTGCTCGAAGGAATTG
* ** *
22666400 ATCGTCTTGAATGGTTTAAGGTAACAAAGT
386 ATAGTCTTGAATACTTTAAGGTACCAAAGT
* * * *
22666430 AAAAGTTTGACAAGTTCGGAAGTTCATCCCAGAACCAAGAGAGAAACAATTCTCACATAAATGAG
1 AAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAAAGTG
* * ** * * *
22666495 TTTTTAATTCAAGGAGTAAAACATCTTTATAAAATGACAAACTATTTAGACAAAATGATTCAATT
66 TTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACAAAATGATTCAATT
* * * * *
22666560 TCCCGAGCATGGAGTGGTCAAAAAATT-TTCGAAGGAATGGATCGTCTTGAATACTTTTAAGGAA
131 ACTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAA
* * * ** * *
22666624 CCAAAGTAATAAAGGATCTCATGAAAGTTTGACAAGTTCTTAAGTTCATCCAAGAGCCCAAGAGA
195 CCAAAGTAATAAAGGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCCAAGAGA
* * * * *
22666689 AACAATTCTCATGTAAATATGTTTTTAATTCAAAGACCAAAACTTGTTTT-TAAAATGAGAAACT
260 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAAC-AAACTT-TTTTACAAAATGACAAACT
* ** *
22666753 ATTTAGACCAAATGAAGTAATTTC-C-----T-G-A-----G-AAAATTGCTCGAAGG-AGTGCA
323 ATTTAGACCAAATGATGCGATTTCACGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATTG-A
*
22666803 TCA-TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
387 T-AGTCTTGAATACTTTAAGGTACC---------AAAG---T
* * *
22666844 AGTAAAGGTTTGACAAGTTCGAAAGTTCGTCCCAGAACCAATACAGAAACAATTCTCACGTAAAA
1 A--AAA-GTTTGACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAAA
* ** * *
22666909 -AGTTTTTAATTTAAAGACTGAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCG
63 GTGTTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACAAAATGATTCA
* * * *
22666973 ATTACCCGAGTA-GGAATATTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
128 ATTACTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * *
22667037 AACCAAAGTTATAAAGGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCAAAGAACCAAGAG
193 AACCAAAGTAATAAAGGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCCA-AG
* * *
22667102 AGAAACAATTCTGACGTAAATAAGTTTCTAATTCAAAGACACAAACTTTTTTTATAAAATGACAA
257 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-ACAAAC-TTTTTTACAAAATGACAA
*
22667167 ACTATTTAGACCAAATGATACGATTTCACGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATT
320 ACTATTTAGACCAAATGATGCGATTTCACGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATT
*
22667232 GATCA-TCTTGAATACTTTAAGGTACTAAAGT
385 GAT-AGTCTTGAATACTTTAAGGTACCAAAGT
*
22667263 AAAAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAACCAGGAGAGAAA
1 --AAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAA
22667311 ATTGCTTGAA
Statistics
Matches: 1417, Mismatches: 213, Indels: 164
0.79 0.12 0.09
Matches are distributed among these distances:
401 3 0.00
402 33 0.02
408 1 0.00
409 1 0.00
410 1 0.00
411 12 0.01
412 8 0.01
413 12 0.01
414 111 0.08
415 278 0.20
416 300 0.21
417 417 0.29
418 157 0.11
419 16 0.01
420 9 0.01
421 9 0.01
422 4 0.00
423 1 0.00
424 1 0.00
425 1 0.00
430 1 0.00
431 38 0.03
432 3 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (415 bp):
AAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAAAGTG
TTTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACAAAATGATTCAATT
ACTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
CAAAGTAATAAAGGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCCAAGAGAA
ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAACAAACTTTTTTACAAAATGACAAACTATT
TAGACCAAATGATGCGATTTCACGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATTGATAGT
CTTGAATACTTTAAGGTACCAAAGT
Found at i:22666394 original size:214 final size:216
Alignment explanation
Indices: 22665949--22667262 Score: 1305
Period size: 214 Copynumber: 6.2 Consensus size: 216
22665939 CGATTTCCCA
* * * * * *
22665949 AGAAAATTGCTCGAAGGAATGCATCTTCTTGTATGCTTTAACGAA-CAGAAGTTATAAATGAACT
1 AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACT
* * ** *
22666013 AGTAAAAGTTTGATAAGTTCGGAAGTTTGTTCC-AAAACCAATAGAGAAACAATTCTCACGTAAA
65 CGTAAAAGTTTGACAAGTTCGGAAG-TTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAAA
* * * *
22666077 -AAGTGTTTAATTTAAAGAC-CAAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATT
129 TAAGTTTTTAATTCAAAGACAC-AAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATT
* * ** * *
22666140 AAATTACTTGAGCATTGAATGTTC
193 CAATTTCACGAGAATGGAATGTTC
* * * ** *
22666164 AAAAAATTGCTCGAAGGAATGGATCGTATTGAATTCTTTAAGGAACCGTAGTCATAAAAGAACTC
1 AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* *
22666229 GTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAAAACCAAGAGTGAAACAATTCTCACGTAAATA
66 GTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
22666294 AGTTTTTAA-T-AAAGACACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
131 AGTTTTTAATTCAAAGACACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATTCAA
*
22666357 TTTCACGAGAATGGAATGTTT
196 TTTCACGAGAATGGAATGTTC
* * ** *
22666378 AGAAAACTGCTCGAAGGAATTGATCGTCTTGAATGGTTTAA-G-------G---TAACA-AA---
1 AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * *
22666428 GTAAAAGTTTGACAAGTTCGGAAGTTCATCCCAGAACCAAGAGAGAAACAATTCTCACATAAATG
66 GTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * *
22666493 AGTTTTTAATTCAAGGAGTA-AAACATCTTTATAAAATGACAAACTATTTAGACAAAATGATTCA
131 AGTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATTCA
* * * *
22666557 ATTTCCCGAGCATGGAGTGGTC
195 ATTTCACGAGAATGGAATGTTC
* * * * *
22666579 AAAAAATT-TTCGAAGGAATGGATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCT
1 AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCAAAGTTATAAAAGAACT
* * ** * * * *
22666643 CATGAAAGTTTGACAAGTTCTTAAGTTCATCCAAGAGCCCA-AGAGAAACAATTCTCATGTAAAT
65 CGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
22666707 ATGTTTTTAATTCAAAGAC-CAAAACTTGTTTT-TAAAATGAGAAACTATTTAGACCAAATGAAG
130 AAGTTTTTAATTCAAAGACAC-AAACTT-TTTTACAAAATGACAAACTATTTAGACCAAATG-AT
22666770 T-AATTTC-C----------TG---
192 TCAATTTCACGAGAATGGAATGTTC
* * * *
22666780 AGAAAATTGCTCGAAGGAGTGCATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTA
1 AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * * * *
22666845 GTAAAGGTTTGACAAGTTCGAAAGTTCGTCCCAGAACCAATACAGAAACAATTCTCACGTAAA-A
66 GTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATA
* ** * * *
22666909 AGTTTTTAATTTAAAGACTGAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
131 AGTTTTTAATTCAAAGACACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATTCAA
* * * *
22666974 TTACCCGAGTA-GGAATATTC
196 TTTCACGAGAATGGAATGTTC
*
22666994 AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAGGAACTC
1 AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * *
22667059 GTAAAAGTTTAACAAGTTCGGAAGTTCGT-CAAAGAACCAAGAGAGAAACAATTCTGACGTAAAT
66 GTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAA-AACCAAGAGAGAAACAATTCTCACGTAAAT
* * *
22667123 AAGTTTCTAATTCAAAGACACAAACTTTTTTTATAAAATGACAAACTATTTAGACCAAATGATAC
130 AAGTTTTTAATTCAAAGACACAAAC-TTTTTTACAAAATGACAAACTATTTAGACCAAATGATTC
*
22667188 GATTTCACGAGAATGGAATGTTC
194 AATTTCACGAGAATGGAATGTTC
* * * *
22667211 -GAAAAATTGCTCGAAGGAATTGATCATCTTGAATACTTTAAGGTACTAAAGT
1 AG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGT
22667263 AAAAAAGTTT
Statistics
Matches: 906, Mismatches: 143, Indels: 98
0.79 0.12 0.09
Matches are distributed among these distances:
199 68 0.08
200 29 0.03
201 185 0.20
202 48 0.05
203 4 0.00
204 2 0.00
206 1 0.00
209 1 0.00
211 1 0.00
212 3 0.00
213 4 0.00
214 214 0.24
215 198 0.22
216 94 0.10
217 54 0.06
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
GTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTTAATTCAAAGACACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATTCAA
TTTCACGAGAATGGAATGTTC
Found at i:22666894 original size:831 final size:834
Alignment explanation
Indices: 22665052--22667310 Score: 3487
Period size: 831 Copynumber: 2.7 Consensus size: 834
22665042 CATGCTCACA
*
22665052 TCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATAAAGCGATTTCCCGAGA
1 TCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGAAGCGATTTCCCGAGA
** *
22665117 AAATTGCTCGAAGGAATGCATCATCCAGAATACTTTAAGGAACATAAGTTATAAAAGAACTAGTA
66 AAATTGCTCGAAGGAATGCATCATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTAGT-
* * * *
22665182 AAAAGTTTAATAAGTTCGAAAGTTCATCCTAGAACCAATAGAGAATCAATTCTCACGTAAAAAGT
130 AAAAGTTTGATAAGTTCGAAAGTTCGTCCCAGAACCAATAGAGAAACAATTCTCACGTAAAAAGT
* * *
22665247 GTTTAATTTAAAGACCAAAACCTGTTTACAAAATGATAAACTATTTAGAACAAATGATTTGATTA
195 GTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTAGATTA
*
22665312 CTCGAGCATGGAATGTTTAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
260 CTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* *
22665377 AAAGTTATAAAGGAACTCGTAAAAGTTTGACCAA-TTCGAAAGTTCGTCCAAGAACTAAGAGAGA
325 AAAGTTATAAAGGAACTCGTAAAAGTTTGA-CAAGTTCGAAAGTTCGTCCAAAAACCAAGAGAGA
*
22665441 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATACAAACTTTTTTACAAAATGACAAACTA
389 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACAAACTTTTTTACAAAATGACAAACTA
*
22665506 TTTAGACCAAATGATGCGATTTCACGAGAATGGAAT-TTTTGAAAAATTGCTCGAAGGAATTGAT
454 TTTAGACCAAATGATGCGATTTCACGAGAATGGAATGTTTAGAAAAATTGCTCGAAGGAATTGAT
* * * * *
22665570 AGTCTTGAATACTTTAAGGTGCCAAAGTAAAAGTTTGATAAATTCGGAACTTCGTCCCAGAACCA
519 CGTCTTGAATACTTTAAGGT-ACAAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAACCA
** * * *
22665635 AGAGAGAAACAATTCTCAGGTAAATGTGTTTTTAATTCAAAGACCAAAACATGTTTATAGAATGA
583 AGAGAGAAACAATTCTCACATAAATGAGTTTTTAATTCAAAGACCAAAACATCTTTATAAAATGA
* * **
22665700 CAAAATATTTAGACAAAATGATTCAATTTCTCGAGCATGGAATGTTCGGAAAATTGTTGAAAGGA
648 CAAAATATTTAGACAAAATGATTCAATTTCCCGAGCATGGAATGGTCAAAAAATTGTTGAAAGGA
*
22665765 ATGGATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCGTGAAAGTTTGACAAGT
713 ATGGATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCATGAAAGTTTGACAAGT
* *
22665830 TCTTAAGTTCGTCCAAGAACCCAAGAGAAACAATTCTCACGTACATACGTTTTTAAT
778 TCTTAAGTTCATCCAAGAACCCAAGAGAAACAATTCTCACGTAAATACGTTTTTAAT
* * *
22665887 TTAAAAACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGAAGCGATTTCCCAAGA
1 TCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGAAGCGATTTCCCGAGA
* * * * *
22665952 AAATTGCTCGAAGGAATGCATCTTCTTGTATGCTTTAACGAACAGAAGTTATAAATGAACTAGTA
66 AAATTGCTCGAAGGAATGCATCATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTAGTA
* * * *
22666017 AAAGTTTGATAAGTTCGGAAGTTTGTTCCAAAACCAATAGAGAAACAATTCTCACGTAAAAAGTG
131 AAAGTTTGATAAGTTCGAAAGTTCGTCCCAGAACCAATAGAGAAACAATTCTCACGTAAAAAGTG
*
22666082 TTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTAAATTAC
196 TTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTAGATTAC
* * * * *
22666147 TTGAGCATTGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTATTGAATTCTTTAAGGAACCG
261 TCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* * * * *
22666212 TAGTCATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAAAACCAAGAGTGAAA
326 AAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAAAACCAAGAGAGAAA
22666277 CAATTCTCACGTAAATAAGTTTTTAA-T-AAAGACACAAACTTTTTTACAAAATGACAAACTATT
391 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACAAACTTTTTTACAAAATGACAAACTATT
*
22666340 TAGACCAAATGATGCGATTTCACGAGAATGGAATGTTTAG-AAAACTGCTCGAAGGAATTGATCG
456 TAGACCAAATGATGCGATTTCACGAGAATGGAATGTTTAGAAAAATTGCTCGAAGGAATTGATCG
** *
22666404 TCTTGAATGGTTTAAGGTAACAAAGTAAAAGTTTGACAAGTTCGGAAGTTCATCCCAGAACCAAG
521 TCTTGAATACTTTAAGGT-ACAAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAACCAAG
* **
22666469 AGAGAAACAATTCTCACATAAATGAGTTTTTAATTCAAGGAGTAAAACATCTTTATAAAATGACA
585 AGAGAAACAATTCTCACATAAATGAGTTTTTAATTCAAAGACCAAAACATCTTTATAAAATGACA
* *
22666534 AACTATTTAGACAAAATGATTCAATTTCCCGAGCATGGAGTGGTCAAAAAATT-TTCG-AAGGAA
650 AAATATTTAGACAAAATGATTCAATTTCCCGAGCATGGAATGGTCAAAAAATTGTT-GAAAGGAA
22666597 TGGATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCATGAAAGTTTGACAAGTT
714 TGGATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCATGAAAGTTTGACAAGTT
* * *
22666662 CTTAAGTTCATCCAAGAGCCCAAGAGAAACAATTCTCATGTAAATATGTTTTTAAT
779 CTTAAGTTCATCCAAGAACCCAAGAGAAACAATTCTCACGTAAATACGTTTTTAAT
** * ** *
22666718 TCAAAGACCAAAACTTGTTTTTAAAATGAGAAACTATTTAGACCAAATGAAGTAATTTCCTGAGA
1 TCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGAAGCGATTTCCCGAGA
*
22666783 AAATTGCTCGAAGGAGTGCATCATCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTAGT
66 AAATTGCTCGAAGGAATGCATCATCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTAGT
* * *
22666847 AAAGGTTTGACAAGTTCGAAAGTTCGTCCCAGAACCAATACAGAAACAATTCTCACGTAAAAAGT
130 AAAAGTTTGATAAGTTCGAAAGTTCGTCCCAGAACCAATAGAGAAACAATTCTCACGTAAAAAGT
* ** *
22666912 TTTTAATTTAAAGACTGAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTA
195 GTTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTAGATTA
* * * *
22666977 CCCGAGTA-GGAATATTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
260 CTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* *
22667041 AAAGTTATAAAGGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGT-CAAAGAACCAAGAGAGA
325 AAAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAA-AACCAAGAGAGA
* * *
22667105 AACAATTCTGACGTAAATAAGTTTCTAATTCAAAGACACAAACTTTTTTTATAAAATGACAAACT
389 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACAAAC-TTTTTTACAAAATGACAAACT
* *
22667170 ATTTAGACCAAATGATACGATTTCACGAGAATGGAATG-TTCGAAAAATTGCTCGAAGGAATTGA
453 ATTTAGACCAAATGATGCGATTTCACGAGAATGGAATGTTTAGAAAAATTGCTCGAAGGAATTGA
*
22667234 TCATCTTGAATACTTTAAGGTACTAAAGTAAAAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAA
518 TCGTCTTGAATACTTTAAGGTAC-AAAGT--AAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAA
*
22667299 CCAGGAGAGAAA
580 CCAAGAGAGAAA
22667311 ATTGCTTGAA
Statistics
Matches: 1289, Mismatches: 123, Indels: 24
0.90 0.09 0.02
Matches are distributed among these distances:
829 4 0.00
830 128 0.10
831 358 0.28
832 272 0.21
833 108 0.08
834 258 0.20
835 161 0.12
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (834 bp):
TCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGAAGCGATTTCCCGAGA
AAATTGCTCGAAGGAATGCATCATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTAGTA
AAAGTTTGATAAGTTCGAAAGTTCGTCCCAGAACCAATAGAGAAACAATTCTCACGTAAAAAGTG
TTTAATTTAAAGACCAAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTAGATTAC
TCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
AAGTTATAAAGGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAAAACCAAGAGAGAAA
CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACACAAACTTTTTTACAAAATGACAAACTATT
TAGACCAAATGATGCGATTTCACGAGAATGGAATGTTTAGAAAAATTGCTCGAAGGAATTGATCG
TCTTGAATACTTTAAGGTACAAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCCAGAACCAAGA
GAGAAACAATTCTCACATAAATGAGTTTTTAATTCAAAGACCAAAACATCTTTATAAAATGACAA
AATATTTAGACAAAATGATTCAATTTCCCGAGCATGGAATGGTCAAAAAATTGTTGAAAGGAATG
GATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCATGAAAGTTTGACAAGTTCT
TAAGTTCATCCAAGAACCCAAGAGAAACAATTCTCACGTAAATACGTTTTTAAT
Found at i:22667773 original size:214 final size:214
Alignment explanation
Indices: 22667308--22668153 Score: 1061
Period size: 216 Copynumber: 3.9 Consensus size: 214
22667298 ACCAGGAGAG
* * *
22667308 AAAATTGCTTGAAGGAATGGATCGTCTTG-ATTAATTTATGGAACCAAAGTTATAAAAGAACTCG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATT-CTTTAAGGAACCAAAGTTATAAAAGAACTCG
* * * **
22667372 TAAAAATTTGACAAGTTCGGATGTTCGTCCATGAACCTTGAGAGAAACAATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
22667437 GTTTTTAAATTAAAGACCAAAAGTTGATAACAAAATGACAAACTATTTAGACTAAACTATGCGAT
130 GTTTTT-AATTCAAGA-CAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAACTATGCGAT
** *
22667502 TTTTCGAGCATGGAATGTTCGG
193 TTCCCGAGCATGGAATGTTCGA
* * * * *
22667524 AAAATTGCTTGAAGGAATGGATCGTCTTAAATTCTTTAAGGAATCGAAGTTATAAAAGAAGTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * *
22667589 AAAAGTTTGACAAGTTCAGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTC-TGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * *
22667653 TTTTTAATTCAAGATCAAAAGTTGATAACAAAATGAAAAAGTATTTAGACAAAACTATGTGATTT
131 TTTTTAATTCAAGA-CAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAACTATGCGATTT
22667718 CCCGAGCATGGAATGTTCGA
195 CCCGAGCATGGAATGTTCGA
*
22667738 AAAATTACTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * *
22667803 AAAGGTTTGAGAAGTTCGGAAGTTTGTCTC-AGAACCAATAGAGAAACAATTCTCACATAAATAA
66 AAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * * * *
22667867 GTTTTTAATTCAAACACAAAAATTTGTTTACAAAATGACAAACTATTTAGACCAGATTATGTGAT
130 GTTTTTAATTC-AAGAC-AAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAACTATGCGAT
** * * *
22667932 TTCTTGTGCATGGAAAGTTCAA
193 TTCCCGAGCATGGAATGTTCGA
* * * * ** *
22667954 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACATTAATGAACCGAAGTTATAACGGAACCCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * *
22668019 AAAAGTTTAACAAGTTCGAAAGTTCATCCAAAAACTAAGAGAGAAACAATTCTAACGCAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
22668084 TTTTTAATTCTAAGACAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAA-TGATGCGATT
131 TTTTTAATTC-AAGACAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAACT-ATGCGATT
22668148 TCCCGA
194 TCCCGA
22668154 TGATACCAGT
Statistics
Matches: 543, Mismatches: 80, Indels: 15
0.85 0.13 0.02
Matches are distributed among these distances:
214 179 0.33
215 78 0.14
216 283 0.52
217 3 0.01
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.28
Consensus pattern (214 bp):
AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAGACAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAACTATGCGATTTC
CCGAGCATGGAATGTTCGA
Found at i:22672612 original size:24 final size:25
Alignment explanation
Indices: 22672566--22672613 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
22672556 AGTTAATAAT
22672566 AATTCTCTTTGAGTTTTTCTTTAAG
1 AATTCTCTTTGAGTTTTTCTTTAAG
22672591 AATTGCTC-TTGAGTTTTT-TTTAA
1 AATT-CTCTTTGAGTTTTTCTTTAA
22672614 AAGTTGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 5 0.23
25 14 0.64
26 3 0.14
ACGTcount: A:0.21, C:0.10, G:0.12, T:0.56
Consensus pattern (25 bp):
AATTCTCTTTGAGTTTTTCTTTAAG
Found at i:22673649 original size:216 final size:212
Alignment explanation
Indices: 22673274--22674118 Score: 886
Period size: 216 Copynumber: 4.0 Consensus size: 212
22673264 TATCACCCGA
* * * * *
22673274 GCATGGAATGTTCAGAAAATTGCACGAAGGAATGGAATCGTCTTCAATATTTTAAGCAACCGATG
1 GCATGGAATGTTCAGAAAATTGCTCGAAGGAATGG-ATCGTCTTGAATACTTTAA-AAACCGAAG
* ** * * *
22673339 TTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC-AGAACCAATAGACAAACA
64 TAAT-AAAGAA-TTCTAAAAGTTTGACAAGTTCGAAAGTTCGTC-CAAGAACCAAGAGAGAAACA
* *
22673403 ATTCTCATGTAAATAAGTTTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAAACTATTTA
126 ATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-AAAACTTGTTTACAAAATGACAAACTATTTA
*
22673468 GACCAAATGATGTGATTTATTAT
190 GACCAAATGATGTGATTTCTTAT
* * *
22673491 GCATGGAATGTTCGGAAAATTGCTCGAAGAAATGGATCGTCTTGAATACATTAAGAAACCGAAGT
1 GCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA-AAACCGAAGT
* *
22673556 TATAACAGAACTTCTAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACCAAGAGAGAAACAAT
65 AATAA-AGAA-TTCTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* *
22673621 TCTCACGTAAATAAGTTTTTAATTCAAAGAC-AAACTTTTTTACAAAATGACAAACTATTTTGAC
128 TCTCACGTAAATAAGTTTTTAATTCAAAGACAAAACTTGTTTACAAAATGACAAACTATTTAGAC
*
22673685 CAAATGATGCGATTTCTT-T
193 CAAATGATGTGATTTCTTAT
* * *
22673704 AGCGTGGAATGTTC-GAAAAATTTCTTGAAGGAAT-GATTCGTCTTGAATACTTT---AA--G--
1 -GCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGA-TCGTCTTGAATACTTTAAAAACCGAA
*
22673760 GTAATAAAG-----TAAAAGTTTGACAAGTTCGAAAGTTCGTCCCAA-AACCAAGAGGGAAACAA
63 GTAATAAAGAATTCTAAAAGTTTGACAAGTTCGAAAGTTCGT-CCAAGAACCAAGAGAGAAACAA
* * *
22673819 TTCTCACGTAAATGAGTTTTTAATTCAAAGACTAAAACATCTTTACAAAATGACAAACTATTTAG
127 TTCTCACGTAAATAAGTTTTTAATTCAAAGAC-AAAACTTGTTTACAAAATGACAAACTATTTAG
* * ** *
22673884 ACAAAATGAT-TCAATTTCCCAA
191 ACCAAATGATGT-GATTTCTTAT
* * * ** *
22673906 GCATGGAATGTTCATAAAAGTT-TTTGAAGGAATGGATCACCTTGAATACTTTTAAAGAACCAAA
1 GCATGGAATGTTCAGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAA-AACCGAA
* * * ** **
22673970 GTAATAAAGGATCTCGTGAAAGTTTGACTAGTTCTTAAGTTCGTCCAAGAACC-CCAGAGAAACA
63 GTAATAAAGAAT-TC-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA
* * *
22674034 ATTCTCACATAAATACGTTTTTAATTCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTA
126 ATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTA
* *
22674099 GACCAAATGAAGCGATTTCT
190 GACCAAATGATGTGATTTCT
22674119 CGAGAAAATT
Statistics
Matches: 534, Mismatches: 62, Indels: 65
0.81 0.09 0.10
Matches are distributed among these distances:
199 74 0.14
200 4 0.01
201 79 0.15
202 7 0.01
205 2 0.00
206 8 0.01
208 1 0.00
210 11 0.02
213 4 0.01
214 88 0.16
215 3 0.01
216 192 0.36
217 61 0.11
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (212 bp):
GCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAAAACCGAAGTA
ATAAAGAATTCTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAAGACAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
ATGATGTGATTTCTTAT
Found at i:22673672 original size:20 final size:21
Alignment explanation
Indices: 22673649--22673691 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
22673639 TTAATTCAAA
*
22673649 GACAAACT-TTTTTACAAAAT
1 GACAAACTATTTTGACAAAAT
*
22673669 GACAAACTATTTTGACCAAAT
1 GACAAACTATTTTGACAAAAT
22673690 GA
1 GA
22673692 TGCGATTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.30
Consensus pattern (21 bp):
GACAAACTATTTTGACAAAAT
Found at i:22674542 original size:216 final size:216
Alignment explanation
Indices: 22674159--22680625 Score: 6284
Period size: 216 Copynumber: 30.6 Consensus size: 216
22674149 TTGAATACTT
* * * *
22674159 GAAGTTCATCCCAGAACCAATAGAGAAACAATTCTCACGTAAA-AAGTTTTTAATTTAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * *
22674223 AAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGAT--TATTACCCGAGCATGGAATGTT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
*
22674286 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACT
131 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* *
22674351 CGTAAAAGTTTGACAGGTTCA
196 CGTAAAAGTTTGACAAGTTCG
* * *
22674372 GAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTCATTCAAAGACAC
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-C
* *
22674437 AAAACTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGAGAATGGAATGT
65 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * **
22674501 TAGGAAAATTGCTCGAAGGAATTGATAGTCTTGAATACTTT-----A---AAG---TACCA-AA-
130 TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
*
22674553 --GTAAAAGTTTGAAAAGTTCG
195 TCGTAAAAGTTTGACAAGTTCG
* * * *
22674573 GAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCATGTAAATGAGTTGTTAATTCAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * *
22674638 AAACATGTTTACAGAATGACAAAATATTTAGACAAAATGATTCAATTTCCCGAGCATGGAATGTT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * * *
22674703 CGAAAAATTGTTCGAAGGAATGGATCGTCTTGAATACTTTTAAGGAACCTAAGTAATAAAGGATC
131 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAAC
* *
22674768 TTGTAAAAGCTTGACAAGCACTTC-
195 TCGTAAAAGTTTGACAAG---TTCG
* * * * *
22674792 -AA-TTTGTCCAAGAACCCA-AGAGAAATAATTCTCACATAAATATGTTTTTAATTCAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
** * ** *
22674854 AAACTTGTTTGGAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTTGTGCATGGAATGTT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
** * ** * * *
22674919 TAGAAAATTGCTTGAAGGAATAAATTGTCTTGAATACATTAAGGAACCGAAGTTATAAAGGAACT
131 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * *
22674984 CATAAAAGTTTAACAAGTTCA
196 CGTAAAAGTTTGACAAGTTCG
* * * *
22675005 GAAGTTAGTCCAAGAATCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACAA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* ** ** * *
22675070 AAATTTGTTTACAAAATGACAAACTATTTAGAGAAAATGATGCGATTTCAGGAGAATAGAATGTT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * *
22675135 TGAAAAATTGCTCGAAAGAATTGG-TCATCTTGAATAGTTTAAGGAACC-----------A-AA-
131 CGGAAAATTGCTCGAAGGAA-TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
*
22675186 --GTAAAAGTTTGACAAGTTCA
195 TCGTAAAAGTTTGACAAGTTCG
* * *
22675206 TAACTTCGTCTCAA-AACCAAGAGAGAAACAATTCTCACGTAAATGAA-TTTTTAATTCAAAGAT
1 GAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-AAGTTTTTAATTCAAAGAC
* * * * * * * * * * *
22675269 GAAAACATGCTTACAGAGTGACAAAATATTTAGACAAAATTATTCCATTTCCCGAGCATGGAAAG
64 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * * *
22675334 TTCGAAAAATTGTTCAAAGGAATTGATCGTCTTGAATGCTTTCTAA-GAACCGAAGTAATAAAGG
129 TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TT-TAAGGAACCGAAGTTATAAAAG
* *
22675398 ATCTTGTAAAAGTTTGACAAGTTCG
192 AACTCGTAAAAGTTTGACAAGTTCG
** * **
22675423 TTAGTTCATCCAAGAACC--GAGAGAAACAATTCTCACGTAAATACTTTTTTAATTCAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
22675486 AAACTTGTTTAGAATATGACAAACTGTTTAAACCAAATGATGCGATTT-CC---C----AA----
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * *
22675539 --GAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTATATGGAATCGAAGTTATAAAAAAACT
131 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
22675602 CGTAAAAGTTTGACAAGTTCG
196 CGTAAAAGTTTGACAAGTTCG
* * * *
22675623 GATGTTCCTTCATGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * * * * *
22675688 AAAGTTGATAACAAAATGACAAACTACTTAAACTAAACT-ACGCGATTTTCCGAGCATGAAATGT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGT
* * * *
22675752 TCGGAAAATTGCTCGAAGTAATGGATCGTCCTAAACT-CTTTAAGGAATCGAAGTTATAAAAGAA
130 TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAACCGAAGTTATAAAAGAA
* *
22675816 CACGTAAAAGTTTGACAAGTTCA
194 CTCGTAAAAGTTTGACAAGTTCG
* * * * * * * *
22675839 AAAATTTGTCCATGAACCAAAAGAGAAACAATTCTCAAGCAAATAAGTTTTTAATTC-AAGATCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
22675903 AAAGTTGATAACAAAATGACAAACTATTTAGACAAAACT-ATGCGATTTCCCGAGCATGGAATGT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGT
* * * *
22675967 TCGAAAAATTGCTCGAAGGAATGGATCGTCCTGAATTCTGTAAGGAACCGAAGTTATAAAAGAAC
130 TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
22676032 TCGTAAAAGTTTGACAAGTTCG
195 TCGTAAAAGTTTGACAAGTTCG
* * *
22676054 GAAGTTTGTCTC-AGAACCAATAGAAAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-C
1 GAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * *** *
22676117 -GAACTTTTTTACAAAATGACAAACTA-TTAGACCAAATGATGCGATTTTATGAGAATGGAATGT
65 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * *
22676180 TC-GAAAATTTGCTCAAAGGAATTGATAGTCTTGAATACTTTAAGGTACC----------AA-AA
130 TCGGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
*
22676233 ----TAAAAGTTTGACAAGTTTG
194 CTCGTAAAAGTTTGACAAGTTCG
* * *
22676252 GAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTAAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * * * * ***
22676317 AAACATGTTTACAGGAATGAAAAAATATTTACACAAAATGATTCAATTTTTTGAGCATGGAATGT
66 AAACTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** * * * * * * *
22676382 TCGAAAAATTATTCGAAGGAATGTATCGTCTTGAATACTTTTAAGGAATCTAAGTAAGAAAGGAT
130 TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAA
* *
22676447 CTTGTAAAAGTTTGACAAGTTCT
194 CTCGTAAAAGTTTGACAAGTTCG
** * * * * *
22676470 TCAGTTCATCCAAGAACCCA-AGAGACACAATTCTCACGTAAATACGTTTTTAATTCATAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * ** * *
22676534 GAACTTCTTTAGAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGTGTATGGAATGTT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* *
22676599 CGGAAAATTGCTCGAATGAATGGATCGTCTTGAATA-TATTAAGGAACCCGAAGTTAT-AACGAA
131 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAA-CCGAAGTTATAAAAG-A
* *
22676662 ACTCATAAAAGTTTGACAAGTTCA
193 ACTCGTAAAAGTTTGACAAGTTCG
* * *
22676686 GAAGTTCATCCAAGAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* ** * * *
22676751 AAACTTGTTTACAAAATGATAAACTATTTAGAGAAAATGATGCGATTGCACGAGAATGGAATGTT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * *
22676816 CGGAAAATTGCTCGAAAGAATTGATCTTCTTGAATAGTTTAAGGTACC-----------A-AA--
131 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
*
22676867 -GTAAAAGTTTGACAAGTTCA
196 CGTAAAAGTTTGACAAGTTCG
* * * * * *
22676887 TAACTTTGTCC-CGAAACCAAGAGAGAAACAATTCTTACGTAAATGAA-TTTTTAATTCAAAGAT
1 GAAGTTCGTCCAAG-AACCAAGAGAGAAACAATTCTCACGTAAAT-AAGTTTTTAATTCAAAGAC
* * * * * * * * * * *
22676950 GAAAACATGCTTACAGAGTGACAAAATATTTAGACAAAATTATTCAATTTCTCGAGCATGGAATG
64 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * ** * * * *
22677015 TTCGAAAAATTGTTAAAAGGAATGGATCATCTTGAATGCTTTTTAA-GAACCGAAGTAATAAAGG
129 TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC--TTTAAGGAACCGAAGTTATAAAAG
* * *
22677079 ATCTTGTAAAAGTTTGACAAGTTCT
192 AACTCGTAAAAGTTTGACAAGTTCG
** * * * **
22677104 TTAGTTCATCCAAGAACC--TAGAGAAACAATTCTCACATAAATACTTTTTTAATTCAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
22677167 AAACTTGTTTAGAATATGACAAACTATTTAAACCAAATGAGGCGATTT-CC---C----AA----
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * *
22677220 --GAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTATGGAACCAAAGTTATAAAAAAACT
131 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
22677283 CGTAAAAGTTTGACAAGTTCG
196 CGTAAAAGTTTGACAAGTTCG
* * * * * *
22677304 GATGTTCCTCCATGAACTAAGAGAGTAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * * * * * *
22677369 AAAGTTGATAACAAAATGACAAACTACTTAGACTAAACT-ATGCAATTTTCTGAGGATGAAATGT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGT
* * * * * * *
22677433 TCGAAAAATTGCTCGATGTAATGGATCGTCCTAAATTCTTTAAGGAATCGAAGTTATAAAAGAAC
130 TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
*
22677498 TCGTAAAAGTTTGACAAGTTCA
195 TCGTAAAAGTTTGACAAGTTCG
* * *
22677520 AAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTC-AAGATCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
22677584 AAAGTTGATAACAAAATGACAAACTATTTAGACAAAACT-ATGCGATTTCCCGAGCATGGAATGT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGT
* * * *
22677648 TCGAAAAATTGCTCGAAGGAATGGATCATCATGAATTCTTTAAGGAACCGAAGTTATAAAAGAAC
130 TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
*
22677713 TCGTAAAAGTTTGACAATTTCG
195 TCGTAAAAGTTTGACAAGTTCG
* *
22677735 GAAGCTT-GTCTC-AGAACCAATAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-
1 GAAG-TTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * *** * *
22677797 CACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTTATGAGAATGGAGT
64 CA-AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * *
22677862 GTTC-GAAAATTTGCTCGAAGGAATTGATAGTCTTGAATACTTTAAGGTACC-----------A-
128 GTTCGGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* *
22677914 AA---GTAAAAGTTTGACAAATTTG
192 AACTCGTAAAAGTTTGACAAGTTCG
* * * * *
22677936 GAAGTACGTCCCAGAACCAAGAGAGAAACAATTCTCACATAAATGAGTTTTTAATTCGAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * * ***
22678001 AAACATGTTTACAAGAATGACAAAATATTTACACAAAATGATTCAATTTTTTGAGCATGGAATGT
66 AAACTTGTTTACAA-AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * * * * *
22678066 TTGAAAAATTGTTCGAAGGAATGGATCGACTTGAATATTTTTAAGGAAACTAAGTAATAAAGGAT
130 TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA-CTTTAAGGAACCGAAGTTATAAAAGAA
* *
22678131 CTTC-TAAAAGTTTTACAAGTTCTT
194 C-TCGTAAAAGTTTGACAAGTTC-G
* * * * *
22678155 CAA-TACATCCAAGAACCCCA-AGAGAAACAATTCTCACGTAAATACG-TTTTAATTCAAAGACC
1 GAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * ** *
22678217 -AAACTTCTTTAGAAAATGACAAACTATTTAGACCCAATGACGCGATTTCTTGTGCATGGAATGT
65 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * **
22678281 TCGTAAAATTGCTCGAAGGAATGGATTGTCTTGAATACATTAAGGAACCGAAGTTGTAAGGGAAC
130 TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
* * *
22678346 TCATAAAAATTTGACAAGTTCA
195 TCGTAAAAGTTTGACAAGTTCG
* * ** *
22678368 GAAGTTCATCCAAGAACCAAGAAAGAAACAATTCTCTTGTAAATAAG---TT-ATTCAGAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * * *
22678429 AAAGTTGATAACAAAATGAAAAACTA-TTATGACCAAATGAAGCGATTTCTCGAGCATGGAAAGT
66 AAACTTGTTTACAAAATGACAAACTATTTA-GACCAAATGATGCGATTTCCCGAGCATGGAATGT
** * * *
22678493 TCTAAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTAAGGAACCAAAGTTATAAAAGAAC
130 TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC
22678558 TCGTAAAAGTTTGACAAGTTCG
195 TCGTAAAAGTTTGACAAGTTCG
* * * *
22678580 GAAGTTCGTCTC-AGAACCAATAGAGAAACAATTCTCACATAAATAACTTTTTAATTC-AAGATC
1 GAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * *
22678643 AAAAGTTGATAACAAAATGACAAACTATTTAGA-AAAAAGTATGCGATTTCCCGAGCATGGAATG
65 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG-ATGCGATTTCCCGAGCATGGAATG
** * *
22678707 TTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCAAAGTTATAAAAGAA
129 TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
22678772 CTCGTAAAAGTTTGACAAGTTCG
194 CTCGTAAAAGTTTGACAAGTTCG
* * *
22678795 GAATTTCGTCCAAGAACCAAGAGTGAAACAATTCTCACGTAAATAATTTTTTAATTCAAAGA--A
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * *
22678858 AAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGAGAATGGAATGTT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
** * * * * * *
22678923 CAAAAAATTGCTCGAAGCAGTTGATTGACTTGAATA-TGTTAAGGTACC-----------A-AA-
131 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGAAC
*
22678974 --GTAAAAGTTTGACAAGTTTG
195 TCGTAAAAGTTTGACAAGTTCG
* * *
22678994 GAAGTTCGTCCCAGAACCAAGAGAGAAATAGTTCTCACGTAAATAAGTTTTTAATTCAAAGA-CA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
22679058 AAAATCTGTTTACAAAATGACAAACTATTTAGATCAAACGATGCAATTTCCCGAGCATGGAATGT
66 AAACT-TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * *
22679123 TTGGAAAATTGCTCGAAGGAAT-TATTCGTCTTCAATATTTTATGGAACCGAATTTATAAAAGAA
130 TCGGAAAATTGCTCGAAGGAATGGA-TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
*
22679187 CTCGTAAAAGTTTGACATGTTCG
194 CTCGTAAAAGTTTGACAAGTTCG
* * * *
22679210 GAAGTTTGTTCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAGGCTTTTAATTCAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * *
22679273 AAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGTT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * *
22679338 CGAAAAATTGCTCGAAGGAAT-GATCGTCTTCAATATTTTAAGGAACCGAAGTTATAAAAAAACT
131 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
22679402 CGTAAAAGTTTGACAAGTTCG
196 CGTAAAAGTTTGACAAGTTCG
* *
22679423 GAAGTTCGTCTC-AGAACCAATAGAGAAACACTTCTCACGTAAATAAGTTTTTAATTCAAAGA-C
1 GAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * * ** *
22679486 AAAATTTTGTTTACAAAATGACAAACAATTTAAACCAAATTATGTGATTTCTTGTGCATGGAATG
65 AAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * *
22679551 TTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACATTAAGGAACCGAAGTTAT-AACGAA
129 TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG-A
*
22679615 ACTCGTAAAAGTTTGACAAGATCG
193 ACTCGTAAAAGTTTGACAAGTTCG
22679639 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * *
22679704 AAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCGAGTATGGAATGTT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * *
22679769 CAGAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTAAGGAACCAAAGTTATAAAAGAACT
131 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
*
22679834 CGTAAAAGTTTTACAAGTTCG
196 CGTAAAAGTTTGACAAGTTCG
* * * * *
22679855 AAAGTTCGTCTC-AGAACCAATAGAGAAACAATTCTCATGTAAGTAAGTTTTTAATTCAAAGACA
1 GAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * ** *
22679919 AAAATTTGTTTACAAAATGACAAACTAGTTAGGCCAAATGATGCGATTTCTTGAGCATGGACT-T
65 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * *
22679983 GTCGGAAAATTGCTCAAAAGAATGGATCGTCTTGAATATTTTTTAA-GAACCGAAGTAATAAAGG
130 -TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA--CTTTAAGGAACCGAAGTTATAAAAG
* * * *
22680047 ATCTTGTAAAAGTTTGAAAAGTTCT
192 AACTCGTAAAAGTTTGACAAGTTCG
** * *
22680072 TCAGTTCGTCCAAGAACC-A-AGAGAAACAATTTTCACGTAAATACGTTTTTAATTCAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
22680135 AAACTTGTTTAGAATATAACAAACTATTTAAACCAAATGATGCGATTT-CC---C----AA----
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * *
22680188 --GAAAATTGCTTGAAGGAATGAATCGTCTTGAAAACTTTATGGAACCAAAGTTATAAAAGAACT
131 CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
*
22680251 CGTAAAAGTTAGACAAGTTCG
196 CGTAAAAGTTTGACAAGTTCG
* * * *
22680272 GATGTTCGTCCATGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * *
22680337 AAAGTTGATAACAAAATGACAAACTATTTAGACTAAACT-ATGTGATTTTTCGAACATTCGAGCA
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGA--TTTC---C---CGAGCA
* * * * * *
22680401 TGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCCTAAATTCTATAAGGAATCGAAGTTAT
122 TGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* *
22680466 AAAAGAACTCGTAACAGTTTGACAAGTTTG
187 AAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * * *
22680496 AAAGTTTGT-CAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTAAATT-TAAGATCA
1 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * *
22680559 AAAGTTGATAACAAAATGACAAACTATTTAGGCAAAACT-ATGCGATTTCCCGAGCATGGAATGT
66 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGT
22680623 TCG
130 TCG
22680626 TCTTCAATAT
Statistics
Matches: 5167, Mismatches: 840, Indels: 493
0.79 0.13 0.08
Matches are distributed among these distances:
197 1 0.00
198 73 0.01
199 86 0.02
200 175 0.03
201 721 0.14
202 383 0.07
203 43 0.01
204 11 0.00
205 3 0.00
206 1 0.00
207 6 0.00
208 4 0.00
210 7 0.00
211 18 0.00
212 172 0.03
213 190 0.04
214 386 0.07
215 1068 0.21
216 1206 0.23
217 344 0.07
218 92 0.02
219 5 0.00
220 7 0.00
222 48 0.01
223 41 0.01
224 76 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
CGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
CGTAAAAGTTTGACAAGTTCG
Found at i:22675233 original size:417 final size:415
Alignment explanation
Indices: 22674802--22681910 Score: 5514
Period size: 417 Copynumber: 16.9 Consensus size: 415
22674792 AATTTGTCCA
* * * * **
22674802 AGAACCCA-AGAGAAATAATTCTCACATAAATATGTTTTTAATTCAAAGACCAAAACTTGTTTGG
1 AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
* * *
22674866 AAAATGACAAACTATTTAGACCAAATGATGTGATTTCTTGTGCATGGAATGTTTAGAAAATTGCT
66 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATG-TTCGAAAATTGCT
* ** * * * *
22674931 TGAAGGAATAAATTGTCTTGAATACATTAAGGAACCGAAGTTATAAAGGAACTCATAAAAGTTTA
130 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTTTG
* * *
22674996 ACAAGTTCAGAAGTTAGTCCAAGAATCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
195 ACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * ** ** *
22675061 CAAAGACAAAAATTTGTTTACAAAATGACAAACTATTTAGAGAAAATGATGCGATTTCAGGAGAA
260 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
* * *
22675126 TAGAATGTTTGAAAAATTGCTCGAAAGAATTGGTCATCTTGAATAGTTTAAGGAACCAAAGTAAA
325 TGGAATGTTCGAAAAATTGCTCGAAGGAA-TGGTCATCTTGAATAGTTTAAGGAACCAAAGTAAA
** *
22675191 AGTTTGACAAGTTCATAACTTCGTCTC
389 AGTTTGACAAGTTCGGAAGTTCGTCTC
* * ** * *
22675218 AAAACCAAGAGAGAAACAATTCTCACGTAAATGAA-TTTTTAATTCAAAGATGAAAACATGCTTA
1 AGAACCAATAGAGAAACAATTCTCACGTAAAT-AAGTTTTTAATTCAAAGACCAAAACTTGTTTA
* * * * * * * ** * *
22675282 CAGAGTGACAAAATATTTAGACAAAATTATTCCATTTCCCGAGCATGGAAAGTTCGAAAAATTGT
65 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCG-AAAATTGC
* * * * * *
22675347 TCAAAGGAATTGATCGTCTTGAATGCTTTCTAA-GAACCGAAGTAATAAAGGATCTTGTAAAAGT
129 TCGAAGGAATGGATCGTCTTGAATAC-TT-TAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGT
* * **
22675411 TTGACAAGTTC-GTTAGTTCATCCAAGAACC--GAGAGAAACAATTCTCACGTAAATACTTTTTT
192 TTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
22675473 AATTCAAAGACCAAAACTTGTTTAGAATATGACAAACTGTTTAAACCAAATGATGCGATTTCCCA
256 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* * * * *** ** * * **
22675538 AG-A--AAATTGCTT-GAAGGAATGGATCGTCTTGAATACT-ATATGGAATCGAAGTTATAAAAA
321 AGCATGGAA-TG-TTCGAA-AAATTGCTCG-AAGGAATGGTCATCTTGAAT---AGTT-TAAGGA
* ** * *
22675598 AAC-TCGTAAAAGTTTGACAAGTTCGGATGTTCCT-TC
378 ACCAAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC
* * * *
22675634 ATGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAA
1 A-GAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
* * * * * *
22675699 CAAAATGACAAACTACTTAAACTAAACT-ACGCGATTT-TCCGAGCATGAAATGTTCGGAAAATT
65 CAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCT-TGAGCATGGAATGTTC-GAAAATT
* * * * * *
22675762 GCTCGAAGTAATGGATCGTCCTAAACT-CTTTAAGGAATCGAAGTTATAAAAGAACACGTAAAAG
127 GCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAG
* * * * * * *
22675826 TTTGACAAGTTCAAAAATTTGTCCATGAACCAAAAGAGAAACAATTCTCAAGCAAATAAGTTTTT
191 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
22675891 AATTC-AAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGACAAAACT-ATGCGATTTCCC
256 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCCC
* * ** *
22675954 GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCCTGAATTCTGTAAGGAACCGAA
320 GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG-TCATCTTGAATAGTTTAAGGAACC---
*
22676019 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTTGTCTC
381 --------A-AA---GTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC
* * *
22676066 AGAACCAATAGAAAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-C-GAACTTTTTTAC
1 AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
*
22676129 AAAATGACAAACTA-TTAGACCAAATGATGCGATTT-TATGAGAATGGAATGTTCGAAAATTTGC
66 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-TGAGCATGGAATGTTCGAAAA-TTGC
* * * *
22676192 TCAAAGGAATTGATAGTCTTGAATACTTTAAGGTACC---------AA--AA----TAAAAGTTT
129 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTTT
** * *
22676242 GACAAGTTTGGAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAAT
194 GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * * * * * * * ***
22676307 TAAAAGACCAAAACATGTTTACAGGAATGAAAAAATATTTACACAAAATGATTCAATTTTTTGAG
259 TCAAAGACCAAAACTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG
** * * * * *
22676372 CATGGAATGTTCGAAAAATTATTCGAAGGAATGTATCGTCTTGAATACTTTTAAGGAATCTAAGT
323 CATGGAATGTTCGAAAAATTGCTCGAAGGAATG-GTCATCTTGAATA-GTTTAAGGAACCAAAGT
* * *
22676437 AAGAAAGGATCTTGTAAAAGTTTGACAAGTTCTTCAGTTCATCC
386 -A-AAA-G-T-TTG-ACAAGTTCG-GAAG---TTC-G-TC-T-C
* * * * * *
22676481 AAGAACCCA-AGAGACACAATTCTCACGTAAATACGTTTTTAATTCATAGACCAGAACTTCTTTA
1 -AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
* * *
22676545 GAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGTGTATGGAATGTTCGGAAAATTGC
65 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTC-GAAAATTGC
* * * *
22676610 TCGAATGAATGGATCGTCTTGAATA-TATTAAGGAACCCGAAGTTATAACGAAACTCATAAAAGT
129 TCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAA-CCGAAGTTATAAAGGAACTCGTAAAAGT
* *
22676674 TTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTA
192 TTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * ** * *
22676739 ATTCAAAGACAAAAACTTGTTTACAAAATGATAAACTATTTAGAGAAAATGATGCGATTGCACGA
257 ATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA
* * * * * *
22676804 GAATGGAATGTTCGGAAAATTGCTCGAAAGAATTGATCTTCTTGAATAGTTTAAGGTACCAAAGT
322 GCATGGAATGTTCGAAAAATTGCTCGAAGGAA-TGGTCATCTTGAATAGTTTAAGGAACCAAAGT
** * *
22676869 AAAAGTTTGACAAGTTCATAACTTTGTC-C
386 AAAAGTTTGACAAGTTCGGAAGTTCGTCTC
* * * ** * *
22676898 CGAAACCAAGAGAGAAACAATTCTTACGTAAATGAA-TTTTTAATTCAAAGATGAAAACATGCTT
1 AG-AACCAATAGAGAAACAATTCTCACGTAAAT-AAGTTTTTAATTCAAAGACCAAAACTTGTTT
* * * * * * * *
22676962 ACAGAGTGACAAAATATTTAGACAAAATTATTCAATTTCTCGAGCATGGAATGTTCGAAAAATTG
64 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCG-AAAATTG
* ** * * * * *
22677027 TTAAAAGGAATGGATCATCTTGAATGCTTTTTAA-GAACCGAAGTAATAAAGGATCTTGTAAAAG
128 CTCGAAGGAATGGATCGTCTTGAATAC--TTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAG
*** * * * **
22677091 TTTGACAAGTTCTTTAGTTCATCCAAGAACC--TAGAGAAACAATTCTCACATAAATACTTTTTT
191 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
22677154 AATTCAAAGACCAAAACTTGTTTAGAATATGACAAACTATTTAAACCAAATGAGGCGATTT-CC-
256 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* * *
22677217 --C----AA-----G-AAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTATGGAACCAAAG
321 AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG-TCATCTTGAATAGTTTAAGGAACC----
* *
22677270 TTATAAAAAAACTCGTAAAAGTTTGACAAGTTCGGATGTTCCTC-C
381 --------AAA---GTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC
* * * * * * *
22677315 ATGAACTAAGAGAGTAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAA
1 A-GAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
* * * * *
22677380 CAAAATGACAAACTACTTAGACTAAACT-ATGCAATTT-TCTGAGGATGAAATGTTCGAAAAATT
65 CAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCT-TGAGCATGGAATGTTCG-AAAATT
* * * * * * *
22677443 GCTCGATGTAATGGATCGTCCTAAATTCTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGT
127 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGT
* *
22677508 TTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTA
192 TTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * * * *
22677573 ATTC-AAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGACAAAACT-ATGCGATTTCCCG
257 ATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCCCG
* **
22677636 AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCATGAATTCTTTAAGGAACCGAAG
321 AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG-TCATCTTGAATAGTTTAAGGAACC----
*
22677701 TTATAAAAGAACTCGTAAAAGTTTGACAATTTCGGAAGCTT-GTCTC
381 -------A-AA---GTAAAAGTTTGACAAGTTCGGAAG-TTCGTCTC
* *
22677747 AGAACCAATAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CACAAACTTTTTTA
1 AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAACTTGTTTA
* * *
22677811 CAAAATGACAAACTATTTAGACCAAATGATGCAATTT-TATGAGAATGGAGTGTTCGAAAATTTG
65 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-TGAGCATGGAATGTTCGAAAA-TTG
* * *
22677875 CTCGAAGGAATTGATAGTCTTGAATACTTTAAGGTACC----------A--AA---GTAAAAGTT
128 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTT
* ** * * * *
22677925 TGACAAATTTGGAAGTACGTCCCAGAACCAAGAGAGAAACAATTCTCACATAAATGAGTTTTTAA
193 TGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * * * * * ***
22677990 TTCGAAGACCAAAACATGTTTACAAGAATGACAAAATATTTACACAAAATGATTCAATTTTTTGA
258 TTCAAAGACCAAAACTTGTTTACAA-AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA
* * * * *
22678055 GCATGGAATGTTTGAAAAATTGTTCGAAGGAATGGATCGA-CTTGAATATTTTTAAGGAAACTAA
322 GCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG-TC-ATCTTGAATA-GTTTAAGGAACCAAA
* * *** *
22678119 GTAATAAAGGATCTTCTAAAAGTTTTACAAGTTCTTCAATACATCC
384 GT-A-AAA-G-T-TT-GACAAG-TTCGGAAG---TTC-GT-C-T-C
* * *
22678165 AAGAACCCCA-AGAGAAACAATTCTCACGTAAATACG-TTTTAATTCAAAGACC-AAACTTCTTT
1 -AGAA-CCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
* * * *
22678227 AGAAAATGACAAACTATTTAGACCCAATGACGCGATTTCTTGTGCATGGAATGTTCGTAAAATTG
64 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCG-AAAATTG
* * * * * *
22678292 CTCGAAGGAATGGATTGTCTTGAATACATTAAGGAACCGAAGTTGTAAGGGAACTCATAAAAATT
128 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTT
* * **
22678357 TGACAAGTTCAGAAGTTCATCCAAGAACCAAGAAAGAAACAATTCTCTTGTAAATAAG---TT-A
193 TGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * * * * *
22678418 TTCAGAGACCAAAAGTTGATAACAAAATGAAAAACTA-TTATGACCAAATGAAGCGATTTCTCGA
258 TTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA-GACCAAATGATGCGATTTCCCGA
* * * * *
22678482 GCATGGAAAGTTCTAAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTAAGGAACCAAAGT
322 GCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG-TCATCTTGAATAGTTTAAGGAACC-----
22678547 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC
381 ------A-AA---GTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC
* * * * * *
22678592 AGAACCAATAGAGAAACAATTCTCACATAAATAACTTTTTAATTC-AAGATCAAAAGTTGATAAC
1 AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
* * ** *
22678656 AAAATGACAAACTATTTAGA-AAAAAGTATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGC
66 AAAATGACAAACTATTTAGACCAAATG-ATGCGATTTCTTGAGCATGGAATGTTC-GAAAATTGC
* * *
22678720 TCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
129 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTTT
* * * *
22678785 GACAAGTTCGGAATTTCGTCCAAGAACCAAGAGTGAAACAATTCTCACGTAAATAATTTTTTAAT
194 GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * *
22678850 TCAAAGA--AAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGAGA
259 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
* * * * * *
22678913 ATGGAATGTTCAAAAAATTGCTCGAAGCAGTTGATTGA-CTTGAATA-TGTTAAGGTACCAAAGT
324 ATGGAATGTTCGAAAAATTGCTCGAAGGA-ATG-GTCATCTTGAATAGT-TTAAGGAACCAAAGT
* *
22678976 AAAAGTTTGACAAGTTTGGAAGTTCGTCCC
386 AAAAGTTTGACAAGTTCGGAAGTTCGTCTC
* * * *
22679006 AGAACCAAGAGAGAAATAGTTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAAATCTGTTTA
1 AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT-TGTTTA
* * * ** *
22679070 CAAAATGACAAACTATTTAGATCAAACGATGCAATTTCCCGAGCATGGAATGTTTGGAAAATTGC
65 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATG-TTCGAAAATTGC
* * * * * *
22679135 TCGAAGGAAT-TATTCGTCTTCAATATTTTATGGAACCGAATTTATAAAAGAACTCGTAAAAGTT
129 TCGAAGGAATGGA-TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTT
* * * * * *
22679199 TGACATGTTCGGAAGTTTGTTCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAGGCTTTTAA
193 TGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * *
22679262 TTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAG
258 TTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG
* * * * *
22679327 CATAGAATGTTCGAAAAATTGCTCGAAGGAATGATCGTCTTCAATATTTTAAGGAACCGAAGTTA
323 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGTCATCTTGAATAGTTTAAGGAACC-------
22679392 TAAAAAAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC
381 -----AAA---GTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC
* *
22679435 AGAACCAATAGAGAAACACTTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAATTTTGTTTA
1 AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-CTTGTTTA
* * * * * *
22679499 CAAAATGACAAACAATTTAAACCAAATTATGTGATTTCTTGTGCATGGAATGTTTGGAAAATTGC
65 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATG-TTCGAAAATTGC
* * *
22679564 TCGAAGGAATGGATCGTCTTGAATACATTAAGGAACCGAAGTTATAACGAAACTCGTAAAAGTTT
129 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTTT
* *
22679629 GACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
194 GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * * * *
22679694 TCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCGAGT
259 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
* * *
22679759 ATGGAATGTTC-AGAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTAAGGAACCAAAGTT
324 ATGGAATGTTCGA-AAAATTGCTCGAAGGAATGG-TCATCTTGAATAGTTTAAGGAACC------
* *
22679823 ATAAAAGAACTCGTAAAAGTTTTACAAGTTCGAAAGTTCGTCTC
381 -----A-AA---GTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC
* * * *
22679867 AGAACCAATAGAGAAACAATTCTCATGTAAGTAAGTTTTTAATTCAAAGACAAAAATTTGTTTAC
1 AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
* * *
22679932 AAAATGACAAACTAGTTAGGCCAAATGATGCGATTTCTTGAGCATGGACT-TGTCGGAAAATTGC
66 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGT-TC-GAAAATTGC
* * * * * *
22679996 TCAAAAGAATGGATCGTCTTGAATATTTTTTAA-GAACCGAAGTAATAAAGGATCTTGTAAAAGT
129 TCGAAGGAATGGATCGTCTTGAATA--CTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGT
* *** * *
22680060 TTGAAAAGTTCTTCAGTTCGTCCAAGAACC-A-AGAGAAACAATTTTCACGTAAATACGTTTTTA
192 TTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * * *
22680123 ATTCAAAGACCAAAACTTGTTTAGAATATAACAAACTATTTAAACCAAATGATGCGATTT-CC--
257 ATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA
* * * * * *
22680185 -C----AA-----G-AAAATTGCTTGAAGGAATGAATCGTCTTGAAAACTTTATGGAACCAAAGT
322 GCATGGAATGTTCGAAAAATTGCTCGAAGGAATG-GTCATCTTGAATAGTTTAAGGAACCAAAG-
*
22680239 TATAAAAGAACTCGTAAAAGTTAGACAAGTTCGGATGTTCGTC-C
385 --T--AA-AA---GT-----TT-GACAAGTTCGGAAGTTCGTCTC
* * * * * *
22680283 ATGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAA
1 A-GAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
* *
22680348 CAAAATGACAAACTATTTAGACTAAACT-ATGTGATTTTTCGAACATTCGAGCATGGAATGTTCG
65 CAAAATGACAAACTATTTAGACCAAA-TGATGCGA--TTT----C-TT-GAGCATGGAATGTTCG
* * * * * *
22680412 AAAAATTGCTCGAAGGAATGGATCGTCCTAAATTCTATAAGGAATCGAAGTTATAAAAGAACTCG
121 -AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCG
* * * *
22680477 TAACAGTTTGACAAGTT-TGAAAGTTTGT-CAAGAACCAAGAGAGAAACAATTCTCATGTAAATA
185 TAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * * * *
22680540 AGTTTTAAATT-TAAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGGCAAAACT-ATGCG
249 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCG
* * *
22680603 ATTTCCCGAGCATGGAATGTTCGTCTTCAATATT--T-TAAGGAA----C--C--G-A-AGTTAT
313 ATTTCCCGAGCATGGAATGTTCG----AAAAATTGCTCGAAGGAATGGTCATCTTGAATAGTT-T
* ** * * *
22680655 AAAAGAA-C-TTGTAAAAGTTTTACAACTTCGAAAGTTCGTCTC
373 -AAGGAACCAAAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC
* * * * *
22680697 AGAACTAATAGACAAAGAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAATTGTTTAC
1 AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
* * * ** ** *
22680762 AAAATGACAAACAATTTAGA-CAGAATGATTCAATTTCCCGAGCACAGAATGTTCGAAAACTTGT
66 AAAATGACAAACTATTTAGACCA-AATGATGCGATTTCTTGAGCATGGAATGTTCGAAAA-TTGC
* ** * *
22680826 TCAAAGGAATGGATCGTCTTGAATACTTTTTAA-GAACTAAAGTAATAAAGGATA-TTGTAAAAG
129 TCGAAGGAATGGATCGTCTTGAATAC--TTTAAGGAACCGAAGTTATAAAGGA-ACTCGTAAAAG
*** * * *
22680889 TTTGACAAGTTCTTCAGTTTGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATATGTTTCT
191 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
22680952 AATTCAAAGACCAAAACTTGTTTAGAATATGACAAACTATTTAAAACAAATGATGCGATTT-CC-
256 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* * *
22681015 --C---G-A-----G-AAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTAAGGAACCAAAG
321 AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG-TCATCTTGAATAGTTTAAGGAACC----
* * *
22681068 TTATAAAAAAATTCGTAAAAGTTTTACTAGTTCGGAAGTTCATCTC
381 --------AAA---GTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC
* * * * * * *
22681114 AGATCTAATAGAGAAACAATTCTCATGTAAGTAAGTTTTTAATTGAAAGACAAAAATTTGTTTAC
1 AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
* * * *
22681179 AAAATGACAAACTAGTTAGACCAAATGATGCGATTTCTTGACCATGGACTGGTCGGAAAATTGCT
66 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTC-GAAAATTGCT
* * * * * *
22681244 CAAAAGAATGGATCGTCTTGAATATTTTTTAA-GAACCGAAGTAATAAAGGATCTTGTAAAAGTT
130 CGAAGGAATGGATCGTCTTGAATA--CTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTT
*** * *
22681308 TGACAAGTTCTTCAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACATAAATACGTTTTTAA
193 TGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * * *
22681371 TTCAAAGACCAAAACTTGTTTAGAATATTACAAACTATTTAAACCAAATGATACGATTTCCCGAG
258 TTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG
* * *** ** * * * *
22681436 -A--AAATTGCTT-GAAAGAA-TGTATCGTCTTGAATACT-TTATGGAATCGAAGTTATAAAAGA
323 CATGGAA-TG-TTCGAAA-AATTG-CTCG-AAGGAATGGTCATCTTGAAT---AGTT-T-AAGGA
* *
22681495 ACTC---GTAAAAGTTTTTACAAGTTCGGATGTTCGTC-C
378 AC-CAAAGTAAAAG-TTTGACAAGTTCGGAAGTTCGTCTC
* * * * *
22681531 ATGAACCAATAGAGAAACAATTCTCATGTAAATAAGTTTTTTATTTAAAGA-CAATATTTGTTTA
1 A-GAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
** *
22681595 CAAAATGTTAAACTATTTAGACCAAATGATGTGATTTCTT-ATGCATGGAATGTTCAGAAAATTG
65 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGA-GCATGGAATGTTC-GAAAATTG
* * * *
22681659 CTCGAAGGAATGGATCATCTTGAATACATTAAGGAACCGAAGTTATAACGGAACTCGTAAATGTT
128 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTT
* * **
22681724 TGACAAGTTCAGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGCCAATAAGTTTTTAA
193 TGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * * * * *
22681789 TTCAAAGACCAAAAGTTGATAACAAAGTGAAAAACTATTTAGACCAAATGATGCAATTTCTCGAG
258 TTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG
* * *
22681854 CATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTTCAATATTTTAAGGAA
323 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGG-TCATCTTGAATAGTTTAAGGAA
22681911 TCGAAGTTAT
Statistics
Matches: 5382, Mismatches: 925, Indels: 773
0.76 0.13 0.11
Matches are distributed among these distances:
388 5 0.00
390 1 0.00
391 6 0.00
393 1 0.00
396 1 0.00
398 2 0.00
399 1 0.00
400 5 0.00
401 7 0.00
402 41 0.01
403 4 0.00
404 9 0.00
405 78 0.01
406 90 0.02
407 27 0.01
408 8 0.00
409 2 0.00
410 3 0.00
411 12 0.00
412 3 0.00
413 204 0.04
414 132 0.02
415 362 0.07
416 438 0.08
417 1186 0.22
418 624 0.12
419 83 0.02
420 23 0.00
421 6 0.00
422 5 0.00
423 18 0.00
424 87 0.02
425 82 0.02
426 59 0.01
427 250 0.05
428 91 0.02
429 346 0.06
430 47 0.01
431 503 0.09
432 270 0.05
433 124 0.02
434 106 0.02
435 5 0.00
436 2 0.00
437 2 0.00
438 3 0.00
439 9 0.00
440 2 0.00
441 2 0.00
442 5 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (415 bp):
AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
AAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCGAAAATTGCTC
GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAAGTTTGA
CAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
GGAATGTTCGAAAAATTGCTCGAAGGAATGGTCATCTTGAATAGTTTAAGGAACCAAAGTAAAAG
TTTGACAAGTTCGGAAGTTCGTCTC
Found at i:22675825 original size:633 final size:631
Alignment explanation
Indices: 22674553--22681984 Score: 5843
Period size: 633 Copynumber: 11.7 Consensus size: 631
22674543 AAGTACCAAA
* * *
22674553 GTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCATGTAAATG
1 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AAAACCAAGAGAGAAACAATTCTCACGTAAAT-
* * * * * * * *
22674618 AGTTGTTAATTCAAAGACCAAAACATGTTTACAGAATGACAAAATATTTAGACAAAATGATTCAA
64 AATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
22674683 TTTCCCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGAATGGATCGTCTTGAATACTTTTAAGG
129 TTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATA-TTTTAAGG
* * * * * * *
22674748 AACCTAAGTAATAAAGGATCTTGTAAAAGCTTGACAAGCACTTC-AA-TTTGTCCAAGAACCCA-
193 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG---TTCGAAGTTCGTCCAAGAA-CCAG
* * * **
22674810 AGAGAAATAATTCTCACATAAATATGTTTTTAATTCAAAGACCAAAACTTGTTTGGAAAATGACA
254 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * *
22674875 AACTATTTAGACCAAATGATGTGATTTCTTGTGCATGGAATGTTTAGAAAATTGCTTGAAGGAAT
319 AACTATTTAGACCAAATGATGCGATTTC-----C---CAATG---A-AAAATTGCTCGAAGGAAT
** * * * * * *
22674940 AAATTGTCTTGAATACATTAAGGAACCGAAGTTATAAAGGAACTCATAAAAGTTTAACAAGTTCA
372 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * *
22675005 GAAGTTAGTCCAAGAATCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACAA
437 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* ** ** * *
22675070 AAATTTGTTTACAAAATGACAAACTATTTAGAGAAAATGATGCGATTTCAGGAGAATAGAATGTT
502 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
* * * * *
22675135 TGAAAAATTGCTCGAAAGAATTGG-TCATCTTGAATAGTTTAAGGAACC----------A--AA-
567 CGAAAAATTGCTCGAAGGAA-TGGATCGTCTTAAAT-CTTTAAGGAACCGAAGTTATAAAGGAAC
22675186 --
630 TC
** *
22675186 GTAAAAGTTTGACAAGTTCATAACTTCGTCTCAAAACCAAGAGAGAAACAATTCTCACGTAAATG
1 GTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAAACCAAGAGAGAAACAATTCTCACGTAAAT-
** * * * * * * * * *
22675251 AATTTTTAATTCAAAGATGAAAACATGCTTACAGAGTGACAAAATATTTAGACAAAATTATTCCA
64 AATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * *
22675316 TTTCCCGAGCATGGAAAGTTCGAAAAATTGTTCAAAGGAATTGATCGTCTTGAATGCTTTCTAA-
129 TTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT-ATTT-TAAG
* * * * * * *
22675380 GAACCGAAGTAATAAAGGATCTTGTAAAAGTTTGACAAGTTCGTTAGTTCATCCAAGAACC-GAG
192 GAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCGTCCAAGAACCAGAG
** * *
22675444 AGAAACAATTCTCACGTAAATACTTTTTTAATTCAAAGACCAAAACTTGTTTAGAATATGACAAA
256 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* * *
22675509 CTGTTTAAACCAAATGATGCGATTTCCCAA-G-AAAATTGCTTGAAGGAATGGATCGTCTTGAAT
321 CTATTTAGACCAAATGATGCGATTTCCCAATGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* * * * * * * *
22675572 ACTATATGGAATCGAAGTTATAAAAAAACTCGTAAAAGTTTGACAAGTTCGGATGTTCCTTCATG
386 ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
* * *
22675637 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAACAA
451 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * * *
22675702 AATGACAAACTACTTAAACTAAACT-ACGCGATTT-TCCGAGCATGAAATGTTCGGAAAATTGCT
516 AATGACAAACTATTTAGACCAAA-TGATGCGATTTCT-CGAGCATGGAATGTTCGAAAAATTGCT
* * * * *
22675765 CGAAGTAATGGATCGTCCTAAACTCTTTAAGGAATCGAAGTTATAAAAGAACAC
579 CGAAGGAATGGATCGTCTTAAA-TCTTTAAGGAACCGAAGTTATAAAGGAACTC
** * * * * * *
22675819 GTAAAAGTTTGACAAGTTCAAAAATTTGTCCATGAACCAAAAGAGAAACAATTCTCAAGCAAATA
1 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA-AAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
22675884 AGTTTTTAATTC-AAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGACAAAACT-ATGCG
65 A-TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCG
* *
22675947 ATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCCTGAAT-TCTGTAAG
128 ATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAT-TTTAAG
* * *
22676011 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTTGTCTC-AGAACCAAT
192 GAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCGTC-CAAGAACC-AG
* * *
22676075 AGAAAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-C-GAACTTTTTTACAAAATGACA
254 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
*** *
22676138 AACTA-TTAGACCAAATGATGCGATTTTATGAGAATGGAATGTTCGAAAATTTGCTCAAAGGAAT
319 AACTATTTAGACCAAATGATGCGA--TT-TCCCAAT-G-A------AAAA-TTGCTCGAAGGAAT
* * * *
22676202 TGATAGTCTTGAATACTTTAAGGTACC----------AA-AA----TAAAAGTTTGACAAGTTTG
372 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * *
22676252 GAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATGAGTTTTTAATTAAAAGACCA
437 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * * * * * *
22676317 AAACATGTTTACAGGAATGAAAAAATATTTACACAAAATGATTCAATTTTTTGAGCATGGAATGT
502 AAACTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
** * * * * * * *
22676382 TCGAAAAATTATTCGAAGGAATGTATCGTCTTGAATACTTTTAAGGAATCTAAGTAAGAAAGGAT
566 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTAAAT-C-TTTAAGGAACCGAAGTTATAAAGGAA
*
22676447 CTT
629 CTC
*** * * *
22676450 GTAAAAGTTTGACAAGTTCTTCAGTTCATCCAAGAACCCA-AGAGACACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
22676514 CGTTTTTAATTCATAGACCAGAACTTCTTTAGAAAATGACAAACTATTTAGACCAAATGATGCGA
65 -ATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
** * * * * *
22676579 TTTCTTGTGTATGGAATGTTCGGAAAATTGCTCGAATGAATGGATCGTCTTGAATATATTAAGGA
129 TTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGA
* * * *
22676644 ACCCGAAGTTAT-AACGAAACTCATAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGA
194 A-CCAAAGTTATAAAAG-AACTCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACC-AGA
* * *
22676708 GACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGATAA
255 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
** * * * *
22676773 ACTATTTAGAGAAAATGATGCGATTGCACGAGAATGGAATGTTCGGAAAATTGCTCGAAAGAATT
320 ACTATTTAGACCAAATGATGCGATTTC-C--CAAT-G-A-------AAAATTGCTCGAAGGAATG
* * * **
22676838 GATCTTCTTGAATAGTTTAAGGTACC-----------A-AA---GTAAAAGTTTGACAAGTTCAT
373 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* * * * **
22676888 AACTTTGTCC-CGAAACCAAGAGAGAAACAATTCTTACGTAAATGAA-TTTTTAATTCAAAGATG
438 AAGTTCGTCCAAG-AACCAAGAGAGAAACAATTCTCACGTAAAT-AAGTTTTTAATTCAAAGACC
* * * * * * * * *
22676951 AAAACATGCTTACAGAGTGACAAAATATTTAGACAAAATTATTCAATTTCTCGAGCATGGAATGT
501 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* ** * * *
22677016 TCGAAAAATTGTTAAAAGGAATGGATCATCTTGAATGCTTTTTAA-GAACCGAAGTAATAAAGGA
566 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTAAAT-C--TTTAAGGAACCGAAGTTATAAAGGA
* *
22677080 TCTT
628 ACTC
*** * * *
22677084 GTAAAAGTTTGACAAGTTCTTTAGTTCATCCAAGAACC--TAGAGAAACAATTCTCACATAAATA
1 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
22677147 CTTTTTTAATTCAAAGACCAAAACTTGTTTAGAATATGACAAACTATTTAAACCAAATGAGGCGA
65 -ATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * *
22677212 TTT-CC---C----AA-----G-AAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTATGGA
129 TTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGA
* * * * *
22677263 ACCAAAGTTATAAAAAAACTCGTAAAAGTTTGACAAGTTCGGATGTTCCTCCATGAACTAAGAGA
194 ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCCAAGAAC-CAGAGA
* * * * *
22677328 GTAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGACAAAC
257 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * ** * *
22677393 TACTTAGACTAAACT-ATGCAATTTTCTGAGGATGAAATGTTCGAAAAATTGCTCGATGTAATGG
322 TATTTAGACCAAA-TGATGCGA-TTTC-------CCAA---T-GAAAAATTGCTCGAAGGAATGG
* * * * **
22677457 ATCGTCCTAAATTCTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAA
374 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* *
22677522 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTC-AAGATCAAA
439 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * *
22677586 AGTTGATAACAAAATGACAAACTATTTAGACAAAACT-ATGCGATTTCCCGAGCATGGAATGTTC
504 ACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCTCGAGCATGGAATGTTC
* * * *
22677650 GAAAAATTGCTCGAAGGAATGGATCATCATGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTC
568 GAAAAATTGCTCGAAGGAATGGATCGTC-TTAAATCTTTAAGGAACCGAAGTTATAAAGGAACTC
* * * *
22677715 GTAAAAGTTTGACAATTTCGGAAGCTT-GTCTCAGAACCAATAGAGAAATAATTCTCACGTAAAT
1 GTAAAAGTTTGACAAGTTCGGAAG-TTCGTC-CAAAACCAAGAGAGAAACAATTCTCACGTAAAT
*
22677779 AAGTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGC
64 AA-TTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* *** * * * * * *
22677843 AATTTTATGAGAATGGAGTGTTCGAAAATTTGCTCGAAGGAATTGATAGTCTTGAATACTTTAAG
127 GATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAG
* * * * *
22677908 GTACC-----------A-AA---GTAAAAGTTTGACAAATTTGGAAGTACGTCCCAGAACCAAGA
192 GAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AAGTTCGAAGTTCGTCCAAGAACC-AGA
* * * *
22677958 GAGAAACAATTCTCACATAAATGAGTTTTTAATTCGAAGACCAAAACATGTTTACAAGAATGACA
255 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA-AATGACA
* * * * * ** *
22678023 AAATATTTACACAAAATGATTCAATTTTTTGAGCATGGAATGTTTGAAAAATTGTTCGAAGGAAT
319 AACTATTTAGACCAAATGATGCGA---TTT---C--CCAA----TGAAAAATTGCTCGAAGGAAT
* * * * * * * *
22678088 GGATCGACTTGAATATTTTTAAGGAAACTAAGTAATAAAGGATCTTC-TAAAAGTTTTACAAGTT
372 GGATCGTCTTGAATA-CTTTAAGGAACCGAAGTTATAAAAGAAC-TCGTAAAAGTTTGACAAGTT
** * * * *
22678152 CTTCAA-TACATCCAAGAACCCCA-AGAGAAACAATTCTCACGTAAATACG-TTTTAATTCAAAG
435 C-GGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * * *
22678214 ACC-AAACTTCTTTAGAAAATGACAAACTATTTAGACCCAATGACGCGATTTCTTGTGCATGGAA
498 ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAA
* * * * * *
22678278 TGTTCGTAAAATTGCTCGAAGGAATGGATTGTCTTGAATACATTAAGGAACCGAAGTTGTAAGGG
563 TGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTAAAT-CTTTAAGGAACCGAAGTTATAAAGG
22678343 AACTC
627 AACTC
* * * * * **
22678348 ATAAAAATTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAAAGAAACAATTCTCTTGTAAATA
1 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * * *
22678413 A--GTT-ATTCAGAGACCAAAAGTTGATAACAAAATGAAAAACTA-TTATGACCAAATGAAGCGA
65 ATTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA-GACCAAATGATGCGA
* * * *
22678474 TTTCTCGAGCATGGAAAGTTCTAAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTAAGGA
129 TTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGA
*
22678539 ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC-AGAACCAATAG
194 ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCGTC-CAAGAACC-AGAG
* * * * * *
22678603 AGAAACAATTCTCACATAAATAACTTTTTAATTC-AAGATCAAAAGTTGATAACAAAATGACAAA
256 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* *
22678667 CTATTTAGA-AAAAAGTATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATG
321 CTATTTAGACCAAATG-ATGCGATTT-CC---C----AATG----AAAAATTGCTCGAAGGAATG
* *
22678731 GATCGTCTTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
373 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* * *
22678796 AATTTCGTCCAAGAACCAAGAGTGAAACAATTCTCACGTAAATAATTTTTTAATTCAAAGA--AA
438 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * *
22678859 AACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGAGAATGGAATGTTC
503 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
* * * * * * * * *
22678924 AAAAAATTGCTCGAAGCAGTTGATTGACTTGAATATGTTAAGGTACC----------A--AA---
568 GAAAAATTGCTCGAAGGAATGGATCGTCTTAAATCT-TTAAGGAACCGAAGTTATAAAGGAACTC
* * * *
22678974 GTAAAAGTTTGACAAGTTTGGAAGTTCGTCCCAGAACCAAGAGAGAAATAGTTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
22679039 AGTTTTTAATTCAAAGA-CAAAAATCTGTTTACAAAATGACAAACTATTTAGATCAAACGATGCA
65 A-TTTTTAATTCAAAGACCAAAACT-TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * * * *
22679103 ATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAAT-TATTCGTCTTCAATATTTTATG
128 ATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA-TCGTCTTGAATATTTTAAG
* * * * *
22679167 GAACCGAATTTATAAAAGAACTCGTAAAAGTTTGACATGTTCGGAAGTTTGTTCAAGAACCA-AG
192 GAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACCAGAG
* * * * * *
22679231 AGAAACAATTCTCACGTAAATAGGCTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAA
256 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
22679296 CTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAAATTGCTCGAAGGAAT-G
321 CTATTTAGACCAAATGATGCGATTT-CC---C----AA---T-GAAAAATTGCTCGAAGGAATGG
* * *
22679360 ATCGTCTTCAATATTTTAAGGAACCGAAGTTATAAAAAAACTCGTAAAAGTTTGACAAGTTCGGA
374 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* *
22679425 AGTTCGTCTC-AGAACCAATAGAGAAACACTTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAA
439 AGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * * *
22679488 AATTTTGTTTACAAAATGACAAACAATTTAAACCAAATTATGTGATTTCTTGTGCATGGAATGTT
503 AA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
* * * * * *
22679553 TGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACATTAAGGAACCGAAGTTATAACGAAACT
567 CGAAAAATTGCTCGAAGGAATGGATCGTCTTAAAT-CTTTAAGGAACCGAAGTTATAAAGGAACT
22679618 C
631 C
*
22679619 GTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
22679684 AGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGTGA
65 A-TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
22679749 TTTCCCGAGTATGGAATGTTC-AGAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTAAGG
129 TTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGG
* *
22679813 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGAAAGTTCGTCTC-AGAACCAATA
193 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCGTC-CAAGAACC-AGA
* * * *
22679877 GAGAAACAATTCTCATGTAAGTAAGTTTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAA
255 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* * * * * *
22679942 ACTAGTTAGGCCAAATGATGCGATTTCTTGAGCATGGACTTGTCGGAAAATTGCTCAAAAGAATG
320 ACTATTTAGACCAAATGATGCGATTTC----CCA---A----T-GAAAAATTGCTCGAAGGAATG
* * * * * *
22680007 GATCGTCTTGAATATTTTTTAA-GAACCGAAGTAATAAAGGATCTTGTAAAAGTTTGAAAAGTTC
373 GATCGTCTTGAATA--CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
*** * *
22680071 TTCAGTTCGTCCAAGAACC-A-AGAGAAACAATTTTCACGTAAATACGTTTTTAATTCAAAGACC
436 GGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * *
22680134 AAAACTTGTTTAGAATATAACAAACTATTTAAACCAAATGATGCGATTTC-C---C----AA---
501 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* * * * * *
22680188 --G-AAAATTGCTTGAAGGAATGAATCGTCTTGAAAACTTTATGGAACCAAAGTTATAAAAGAAC
566 TCGAAAAATTGCTCGAAGGAATGGATCGTCTT-AAATCTTTAAGGAACCGAAGTTATAAAGGAAC
22680250 TC
630 TC
* * * * *
22680252 GTAAAAGTTAGACAAGTTCGGATGTTCGTCCATGAACCAAGAGAAAAACAATTCTCACATAAATA
1 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA-AAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
22680317 AGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGACAAACTATTTAGACTAAACT-ATGTG
65 A-TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCG
*
22680381 ATTTTTCGAACATTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCCT-AA-A
128 A--TTTC---C---CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* * * * *
22680444 TTCTATAAGGAATCGAAGTTATAAAAGAACTCGTAACAGTTTGACAAGTTTGAAAGTTTGT-CAA
185 TT-T-TAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCGTCCAA
* * * * * * *
22680508 GAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTAAATT-TAAGATCAAAAGTTGATAACA
247 GAACC-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
* * * *
22680572 AAATGACAAACTATTTAGGCAAAACT-ATGCGATTTCCC---G----A--G--C-ATGGAAT-GT
311 AAATGACAAACTATTTAGACCAAA-TGATGCGATTTCCCAATGAAAAATTGCTCGAAGGAATGGA
* * * * * *
22680623 TCGTCTTCAATATTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTTACAACTTCGAAA
375 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
* * * * *
22680688 GTTCGTCTC-AGAACTAATAGACAAAGAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAA
440 GTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * * **
22680752 AATTGTTTACAAAATGACAAACAATTTAGA-CAGAATGATTCAATTTCCCGAGCACAGAATGTTC
504 ACTTGTTTACAAAATGACAAACTATTTAGACCA-AATGATGCGATTTCTCGAGCATGGAATGTTC
* * * * ** *
22680816 GAAAACTTGTTCAAAGGAATGGATCGTCTTGAATACTTTTTAA-GAACTAAAGTAATAAAGGATA
568 GAAAAATTGCTCGAAGGAATGGATCGTCTT-AA-A-TCTTTAAGGAACCGAAGTTATAAAGGA-A
*
22680880 -TT
629 CTC
*** *
22680882 GTAAAAGTTTGACAAGTTCTTCAGTTTGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAAT-
1 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
22680944 ATGTTTCTAATTCAAAGACCAAAACTTGTTTAGAATATGACAAACTATTTAAAACAAATGATGCG
65 AT-TTT-TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
*
22681009 ATTT-CC---C---G-A-----G-AAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTAAGG
128 ATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGG
* * * * * * * *
22681060 AACCAAAGTTATAAAAAAATTCGTAAAAGTTTTACTAGTTCGGAAGTTCATCTC-AGATCTAATA
193 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCGTC-CAAGAAC-CAGA
* * * * *
22681124 GAGAAACAATTCTCATGTAAGTAAGTTTTTAATTGAAAGACAAAAATTTGTTTACAAAATGACAA
255 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* * * *
22681189 ACTAGTTAGACCAAATGATGCGATTTCTTGACCATGGACTGGTCGGAAAATTGCTCAAAAGAATG
320 ACTATTTAGACCAAATGATGCGATTTC----CCA---A----T-GAAAAATTGCTCGAAGGAATG
* * * * *
22681254 GATCGTCTTGAATATTTTTTAA-GAACCGAAGTAATAAAGGATCTTGTAAAAGTTTGACAAGTTC
373 GATCGTCTTGAATA--CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
*** * *
22681318 TTCAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACATAAATACGTTTTTAATTCAAAGACC
436 GGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * *
22681381 AAAACTTGTTTAGAATATTACAAACTATTTAAACCAAATGATACGATTTC-C---C---G-A---
501 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* * * * * * *
22681435 --G-AAAATTGCTTGAAAGAATGTATCGTCTTGAATACTTTATGGAATCGAAGTTATAAAAGAAC
566 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTAAAT-CTTTAAGGAACCGAAGTTATAAAGGAAC
22681497 TC
630 TC
* * * * *
22681499 GTAAAAGTTTTTACAAGTTCGGATGTTCGTCCATGAACCAATAGAGAAACAATTCTCATGTAAAT
1 GTAAAAG-TTTGACAAGTTCGGAAGTTCGTCCA-AAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * ** *
22681564 AAGTTTTTTATTTAAAGA-CAATATTTGTTTACAAAATGTTAAACTATTTAGACCAAATGATGTG
64 AA-TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
** * **
22681628 ATTT-CTTATGCATGGAATGTTC-AGAAAATTGCTCGAAGGAATGGATCATCTTGAATACATTAA
128 ATTTCCCGA-GCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAA
* ** * *
22681691 GGAACCGAAGTTATAACGGAACTCGTAAATGTTTGACAAGTTCAGAAATTCGTCCAAGAACCAAG
191 GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACC-AG
* ** * * * * *
22681756 AGAGAAACAATTCTCATGCCAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAGTGAAA
254 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
*
22681821 AACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAAT
319 AACTATTTAGACCAAATGATGCGATTTC-C---C----AATG----AAAAATTGCTCGAAGGAAT
* * * * * * *
22681886 GGATCATCTTCAATATTTTAAGGAATCGAAGTTATAAAAAAACTCGTAAAATTTTGACAAGTTTG
372 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* *
22681951 GAAGTTCGTCTC-ACAACCAATAGAGAAACAATTC
437 GAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTC
22681985 GATTGTCTTG
Statistics
Matches: 5566, Mismatches: 875, Indels: 715
0.78 0.12 0.10
Matches are distributed among these distances:
606 71 0.01
607 44 0.01
608 50 0.01
612 9 0.00
613 50 0.01
614 16 0.00
615 83 0.01
616 9 0.00
617 26 0.00
618 413 0.07
619 91 0.02
620 33 0.01
621 4 0.00
622 2 0.00
623 7 0.00
624 4 0.00
625 4 0.00
626 58 0.01
627 11 0.00
628 221 0.04
629 309 0.06
630 421 0.08
631 287 0.05
632 586 0.11
633 1164 0.21
634 316 0.06
635 172 0.03
636 8 0.00
637 2 0.00
638 4 0.00
639 56 0.01
640 53 0.01
641 267 0.05
642 70 0.01
643 26 0.00
644 101 0.02
645 213 0.04
646 12 0.00
647 217 0.04
648 20 0.00
649 50 0.01
650 6 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (631 bp):
GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAAACCAAGAGAGAAACAATTCTCACGTAAATAA
TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
TCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAAC
CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAGTTCGTCCAAGAACCAGAGAGAAA
CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
TAGACCAAATGATGCGATTTCCCAATGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA
AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGA
CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGA
ATGGATCGTCTTAAATCTTTAAGGAACCGAAGTTATAAAGGAACTC
Found at i:22676073 original size:215 final size:215
Alignment explanation
Indices: 22675540--22680625 Score: 4935
Period size: 215 Copynumber: 24.0 Consensus size: 215
22675530 ATTTCCCAAG
* * * * * *
22675540 AAAATTGCTTGAAGGAATGGATCGTCTTGAATACTATATGGAATCGAAGTTATAAAAAAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * *
22675605 AAAAGTTTGACAAGTTCGGATGTTCCTTCATGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * * *
22675670 TTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGACAAACTACTTAAACTAAACT-ACGCGAT
130 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGAT
* * *
22675734 TTTCCGAGCATGAAATGTTCGG
194 TTCCCGAGCATGGAATGTTCGA
* * * * * *
22675756 AAAATTGCTCGAAGTAATGGATCGTCCTAAACTCTTTAAGGAATCGAAGTTATAAAAGAACACGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
** * * * * *
22675821 AAAAGTTTGACAAGTTCAAAAATTTGTCCATGAACCAAAAGAGAAACAATTCTCAAGCAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
22675886 TTTTTAATTC-AAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGACAAAACT-ATGCGAT
130 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGAT
22675949 TTCCCGAGCATGGAATGTTCGA
194 TTCCCGAGCATGGAATGTTCGA
* *
22675971 AAAATTGCTCGAAGGAATGGATCGTCCTGAATTCTGTAAGGAACCGAAGTTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * *
22676036 AAAAGTTTGACAAGTTCGGAAGTTTGTCTCAGAACCAATAGAAAAACAATTCTCACGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTC-CAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* *
22676101 TTTTTAATTCAAAGA-C-GAACTTTTTTACAAAATGACAAACTA-TTAGACCAAATGATGCGATT
130 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
*** *
22676163 TTATGAGAATGGAATGTTCGA
195 TCCCGAGCATGGAATGTTCGA
* * * * * *
22676184 AAATTTGCTCAAAGGAATTGATAGTCTTGAATACTTTAAGGTACC----------AA-AA----T
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* *
22676234 AAAAGTTTGACAAGTTTGGAAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATGAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * * * * *
22676299 TTTTTAATTAAAAGACCAAAACATGTTTACAGGAATGAAAAAATATTTACACAAAATGATTCAAT
130 TTTTTAATTCAAAGACCAAAACTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGAT
***
22676364 TTTTTGAGCATGGAATGTTCGA
194 TTCCCGAGCATGGAATGTTCGA
** * * * * * * * * *
22676386 AAAATTATTCGAAGGAATGTATCGTCTTGAATACTTTTAAGGAATCTAAGTAAGAAAGGATCTTG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTC-TTTAAGGAACCGAAGTTATAAAAGAACTCG
*** * * * *
22676451 TAAAAGTTTGACAAGTTCTTCAGTTCATCCAAGAACCCA-AGAGACACAATTCTCACGTAAATAC
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
22676515 GTTTTTAATTCATAGACCAGAACTTCTTTAGAAAATGACAAACTATTTAGACCAAATGATGCGAT
129 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
** * * *
22676580 TTCTTGTGTATGGAATGTTCGG
194 TTCCCGAGCATGGAATGTTCGA
* * *
22676602 AAAATTGCTCGAATGAATGGATCGTCTTGAATAT-ATTAAGGAACCCGAAGTTAT-AACGAAACT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAAT-TCTTTAAGGAA-CCGAAGTTATAAAAG-AACT
* * * *
22676665 CATAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGACAAACAATTCTCACGTAAAT
63 CGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * **
22676730 AAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGATAAACTATTTAGAGAAAATGATGCG
127 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * * *
22676795 ATTGCACGAGAATGGAATGTTCGG
192 ATTTCCCGAGCATGGAATGTTCGA
* * * ** *
22676819 AAAATTGCTCGAAAGAATTGATCTTCTTGAATAGTTTAAGGTACC-----------A-AA---GT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
** * * * *
22676869 AAAAGTTTGACAAGTTCATAACTTTGTCCCGAAACCAAGAGAGAAACAATTCTTACGTAAATGAA
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAG-AACCAAGAGAGAAACAATTCTCACGTAAAT-AA
** * * * * * * * * *
22676934 -TTTTTAATTCAAAGATGAAAACATGCTTACAGAGTGACAAAATATTTAGACAAAATTATTCAAT
129 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
*
22676998 TTCTCGAGCATGGAATGTTCGA
194 TTCCCGAGCATGGAATGTTCGA
* ** * * * * * *
22677020 AAAATTGTTAAAAGGAATGGATCATCTTGAATGCTTTTTAA-GAACCGAAGTAATAAAGGATCTT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAAT--TCTTTAAGGAACCGAAGTTATAAAAGAACTC
*** * * *
22677084 GTAAAAGTTTGACAAGTTCTTTAGTTCATCCAAGAACC--TAGAGAAACAATTCTCACATAAATA
64 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * * * *
22677147 CTTTTTTAATTCAAAGACCAAAACTTGTTTAGAATATGACAAACTATTTAAACCAAATGAGGCGA
128 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
22677212 TTT-CC---C----AA-----G-
193 TTTCCCGAGCATGGAATGTTCGA
* * * * * *
22677221 AAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTATGGAACCAAAGTTATAAAAAAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * * *
22677286 AAAAGTTTGACAAGTTCGGATGTTCCTCCATGAACTAAGAGAGTAACAATTCTCATGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * *
22677351 TTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGACAAACTACTTAGACTAAACT-ATGCAAT
130 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGAT
* * * *
22677415 TTTCTGAGGATGAAATGTTCGA
194 TTCCCGAGCATGGAATGTTCGA
* * * * *
22677437 AAAATTGCTCGATGTAATGGATCGTCCTAAATTCTTTAAGGAATCGAAGTTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
** *
22677502 AAAAGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
22677567 TTTTTAATTC-AAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGACAAAACT-ATGCGAT
130 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGAT
22677630 TTCCCGAGCATGGAATGTTCGA
194 TTCCCGAGCATGGAATGTTCGA
* *
22677652 AAAATTGCTCGAAGGAATGGATCATCATGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * *
22677717 AAAAGTTTGACAATTTCGGAAGCTT-GTCTCAGAACCAATAGAGAAATAATTCTCACGTAAATAA
66 AAAAGTTTGACAAGTTCGGAAG-TTCGTC-CAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* *
22677781 GTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCAA
129 GTTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*** * *
22677845 TTTTATGAGAATGGAGTGTTCGA
193 TTTCCCGAGCATGGAATGTTCGA
* * * * *
22677868 AAATTTGCTCGAAGGAATTGATAGTCTTGAATACTTTAAGGTACC-----------A-AA---GT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * * *
22677918 AAAAGTTTGACAAATTTGGAAGTACGTCCCAGAACCAAGAGAGAAACAATTCTCACATAAATGAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGT-CCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * * *
22677983 TTTTTAATTCGAAGACCAAAACATGTTTACAAGAATGACAAAATATTTACACAAAATGATTCAAT
130 TTTTTAATTCAAAGACCAAAACTTGTTTACAA-AATGACAAACTATTTAGACCAAATGATGCGAT
*** *
22678048 TTTTTGAGCATGGAATGTTTGA
194 TTCCCGAGCATGGAATGTTCGA
* * * * * * * *
22678070 AAAATTGTTCGAAGGAATGGATCGACTTGAATATTTTTAAGGAAACTAAGTAATAAAGGATCTTC
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAAT-TCTTTAAGGAACCGAAGTTATAAAAGAAC-TC
* ** * * *
22678135 -TAAAAGTTTTACAAGTTCTTCAA-TACATCCAAGAACCCCA-AGAGAAACAATTCTCACGTAAA
64 GTAAAAGTTTGACAAGTTC-GGAAGTTCGTCC-AGAA-CCAAGAGAGAAACAATTCTCACGTAAA
* * * * *
22678197 TACG-TTTTAATTCAAAGACC-AAACTTCTTTAGAAAATGACAAACTATTTAGACCCAATGACGC
126 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
** * *
22678260 GATTTCTTGTGCATGGAATGTTCGT
191 GATTTCCCGAGCATGGAATGTTCGA
* * * * ** *
22678285 AAAATTGCTCGAAGGAATGGATTGTCTTGAATACATTAAGGAACCGAAGTTGTAAGGGAACTCAT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * * **
22678350 AAAAATTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAAAGAAACAATTCTCTTGTAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * *
22678415 ---TT-ATTCAGAGACCAAAAGTTGATAACAAAATGAAAAACTA-TTATGACCAAATGAAGCGAT
130 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA-GACCAAATGATGCGAT
* * *
22678475 TTCTCGAGCATGGAAAGTTCTA
194 TTCCCGAGCATGGAATGTTCGA
* *
22678497 AAAATTGCTCGAAGGAATGGATCGTCTTCAATAT-TTTAAGGAACCAAAGTTATAAAAGAACTCG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAAT-TCTTTAAGGAACCGAAGTTATAAAAGAACTCG
* *
22678561 TAAAAGTTTGACAAGTTCGGAAGTTCGTCTCAGAACCAATAGAGAAACAATTCTCACATAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * * *
22678626 CTTTTTAATTC-AAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGA-AAAAAGTATGCGA
129 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG-ATGCGA
*
22678689 TTTCCCGAGCATGGAATGTTCAA
193 TTTCCCGAGCATGGAATGTTCGA
*
22678712 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * *
22678777 AAAAGTTTGACAAGTTCGGAATTTCGTCCAAGAACCAAGAGTGAAACAATTCTCACGTAAATAAT
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
*
22678842 TTTTTAATTCAAAGA--AAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
130 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * *
22678905 TCACGAGAATGGAATGTTCAA
195 TCCCGAGCATGGAATGTTCGA
* * * * * * *
22678926 AAAATTGCTCGAAGCAGTTGATTGACTTGAATAT-GTTAAGGTACC-----------A-AA---G
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAAT-TCTTTAAGGAACCGAAGTTATAAAAGAACTCG
* * *
22678975 TAAAAGTTTGACAAGTTTGGAAGTTCGTCCCAGAACCAAGAGAGAAATAGTTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
22679040 GTTTTTAATTCAAAGA-CAAAAATCTGTTTACAAAATGACAAACTATTTAGATCAAACGATGCAA
129 GTTTTTAATTCAAAGACCAAAACT-TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
22679104 TTTCCCGAGCATGGAATGTTTGG
193 TTTCCCGAGCATGGAATGTTCGA
* * * *
22679127 AAAATTGCTCGAAGGAAT-TATTCGTCTTCAATAT-TTTATGGAACCGAATTTATAAAAGAACTC
1 AAAATTGCTCGAAGGAATGGA-TCGTCTTGAAT-TCTTTAAGGAACCGAAGTTATAAAAGAACTC
* * *
22679190 GTAAAAGTTTGACATGTTCGGAAGTTTGTTCAAGAACC-A-AGAGAAACAATTCTCACGTAAATA
64 GTAAAAGTTTGACAAGTTCGGAAGTTCG-TCCAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * *
22679253 GGCTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGA
128 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
22679318 TTTCCCGAGCATAGAATGTTCGA
193 TTTCCCGAGCATGGAATGTTCGA
* *
22679341 AAAATTGCTCGAAGGAAT-GATCGTCTTCAATAT-TTTAAGGAACCGAAGTTATAAAAAAACTCG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAAT-TCTTTAAGGAACCGAAGTTATAAAAGAACTCG
* *
22679404 TAAAAGTTTGACAAGTTCGGAAGTTCGTCTCAGAACCAATAGAGAAACACTTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
22679469 GTTTTTAATTCAAAGA-CAAAATTTTGTTTACAAAATGACAAACAATTTAAACCAAATTATGTGA
129 GTTTTTAATTCAAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
** * * *
22679533 TTTCTTGTGCATGGAATGTTTGG
193 TTTCCCGAGCATGGAATGTTCGA
* * *
22679556 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACATTAAGGAACCGAAGTTAT-AACGAAACTCG
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAG-AACTCG
*
22679620 TAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
22679685 GTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGTGAT
129 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
*
22679750 TTCCCGAGTATGGAATGTTC-A
194 TTCCCGAGCATGGAATGTTCGA
* *
22679771 GAAAATTGCTCGAAGGAATGGATCGTCTTCAATAT-TTTAAGGAACCAAAGTTATAAAAGAACTC
1 -AAAATTGCTCGAAGGAATGGATCGTCTTGAAT-TCTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * *
22679835 GTAAAAGTTTTACAAGTTCGAAAGTTCGTCTCAGAACCAATAGAGAAACAATTCTCATGTAAGTA
64 GTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
22679900 AGTTTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAAACTAGTTAGGCCAAATGATGCGA
128 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
** * *
22679965 TTTCTTGAGCATGGACT-TGTCGG
193 TTTCCCGAGCATGGAATGT-TCGA
* * * * * * *
22679988 AAAATTGCTCAAAAGAATGGATCGTCTTGAATATTTTTTAA-GAACCGAAGTAATAAAGGATCTT
1 AAAATTGCTCGAAGGAATGGATCGTCTTG-A-ATTCTTTAAGGAACCGAAGTTATAAAAGAACTC
* *** *
22680052 GTAAAAGTTTGAAAAGTTCTTCAGTTCGTCCAAGAACC-A-AGAGAAACAATTTTCACGTAAATA
64 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
22680115 CGTTTTTAATTCAAAGACCAAAACTTGTTTAGAATATAACAAACTATTTAAACCAAATGATGCGA
128 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
22680180 TTT-CC---C----AA-----G-
193 TTTCCCGAGCATGGAATGTTCGA
* * ** * *
22680189 AAAATTGCTTGAAGGAATGAATCGTCTTGAAAACTTTATGGAACCAAAGTTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * *
22680254 AAAAGTTAGACAAGTTCGGATGTTCGTCCATGAACCAAGAGAAAAACAATTCTCACATAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
22680319 TTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGACAAACTATTTAGACTAAACT-ATGTGAT
130 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGA-
22680383 TTTTCGAACATTCGAGCATGGAATGTTCGA
193 -TTTC---C---CGAGCATGGAATGTTCGA
* * * *
22680413 AAAATTGCTCGAAGGAATGGATCGTCCTAAATTCTATAAGGAATCGAAGTTATAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * * * *
22680478 AACAGTTTGACAAGTTTGAAAGTTTGTCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGT
66 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * * * * *
22680543 TTTAAATT-TAAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGGCAAAACT-ATGCGATT
131 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATT
22680606 TCCCGAGCATGGAATGTTCG
195 TCCCGAGCATGGAATGTTCG
22680626 TCTTCAATAT
Statistics
Matches: 4041, Mismatches: 645, Indels: 370
0.80 0.13 0.07
Matches are distributed among these distances:
197 1 0.00
198 73 0.02
199 85 0.02
200 116 0.03
201 385 0.10
202 299 0.07
203 29 0.01
204 7 0.00
205 1 0.00
207 3 0.00
208 1 0.00
210 2 0.00
211 16 0.00
212 166 0.04
213 153 0.04
214 326 0.08
215 934 0.23
216 891 0.22
217 290 0.07
218 88 0.02
219 5 0.00
220 4 0.00
222 48 0.01
223 40 0.01
224 78 0.02
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (215 bp):
AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCGGAAGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
CCCGAGCATGGAATGTTCGA
Found at i:22680814 original size:191 final size:189
Alignment explanation
Indices: 22680449--22680816 Score: 461
Period size: 191 Copynumber: 1.9 Consensus size: 189
22680439 CTAAATTCTA
* * * * *
22680449 TAAGGAATCGAAGTTATAAAAGAACTCGTAACAGTTTGACAAGTTTGAAAGTTTGTCAAGAACCA
1 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAACTTCGAAAGTTCGTCAAGAACCA
* * * *
22680514 AGAGAGAAACAATTCTCATGTAAATAAGTTTTAAATTTAAGATCAAAAGTTGATAACAAAATGAC
66 AGAGACAAACAATTCTCACGTAAATAAGTTTTAAATTAAAGATCAAAAATTGATAACAAAATGAC
* * * **
22680579 AAACTATTTAGGCAAAACTATGCGATTTCCCGAGCATGGAATGTTCGTCTTCAATATTT
131 AAACAATTTAGACAAAACTATGCAATTTCCCGAGCACAGAATGTTCGTCTTCAATATTT
* * * *
22680638 TAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTTACAACTTCGAAAGTTCGTCTCAGAACT
1 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAACTTCGAAAGTTCGTC-AAGAACC
* * * * *
22680703 AATAGACAAAGAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAAAATTGTTTACAAAAT
65 AAGAGACAAACAATTCTCACGTAAATAAGTTTTAAATT-AAAGATC-AAAAATTGATAACAAAAT
* *
22680767 GACAAACAATTTAGACAGAA-TGATTCAATTTCCCGAGCACAGAATGTTCG
128 GACAAACAATTTAGACAAAACT-ATGCAATTTCCCGAGCACAGAATGTTCG
22680817 AAAACTTGTT
Statistics
Matches: 150, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
189 50 0.33
190 40 0.27
191 60 0.40
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (189 bp):
TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAACTTCGAAAGTTCGTCAAGAACCA
AGAGACAAACAATTCTCACGTAAATAAGTTTTAAATTAAAGATCAAAAATTGATAACAAAATGAC
AAACAATTTAGACAAAACTATGCAATTTCCCGAGCACAGAATGTTCGTCTTCAATATTT
Found at i:22681392 original size:215 final size:214
Alignment explanation
Indices: 22681017--22681984 Score: 975
Period size: 216 Copynumber: 4.6 Consensus size: 214
22681007 CGATTTCCCG
* * * * * *
22681017 AGAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTAAGGAACCAAAGTTATAAAAAAATTC
1 AGAAAATTGCTCGAAAGAATGGATCATCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * * *
22681082 GTAAAAGTTTTACTAGTTCGGAAGTTCATCTC-AGATCTAATAGAGAAACAATTCTCATGTAAGT
66 GTAAAAGTTTGACAAGTTC-GAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCATGTAAAT
* * *
22681146 AAGTTTTTAATTGAAAGACAAAAATTTGTTTACAAAATGACAAACTAGTTAGACCAAATGATGCG
129 AAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* *
22681211 ATTTCTTGACCATGGACTGGTC
194 ATTTCTT-ACCATGGAATGTTC
* * * * * *
22681233 GGAAAATTGCTCAAAAGAATGGATCGTCTTGAATATTTTTTAA-GAACCGAAGTAATAAAGGATC
1 AGAAAATTGCTCGAAAGAATGGATCATCTTGAATA--TTTTAAGGAACCGAAGTTATAAAAGAAC
* ** **
22681297 TTGTAAAAGTTTGACAAGTTCTTCAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACATAAA
64 TCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAA
* * * * * * *
22681360 TACGTTTTTAATTCAAAGACCAAAACTTGTTTAGAATATTACAAACTATTTAAACCAAATGATAC
128 TAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
22681425 GATTTC---CC-------G---
193 GATTTCTTACCATGGAATGTTC
* * * * * *
22681434 AGAAAATTGCTTGAAAGAATGTATCGTCTTGAATACTTTATGGAATCGAAGTTATAAAAGAACTC
1 AGAAAATTGCTCGAAAGAATGGATCATCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * *
22681499 GTAAAAGTTTTTACAAGTTCGGATGTTCGTCCATGAACCAATAGAGAAACAATTCTCATGTAAAT
66 GTAAAAG-TTTGACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAT
* * * ** *
22681564 AAGTTTTTTATTTAAAGA-CAATATTTGTTTACAAAATGTTAAACTATTTAGACCAAATGATGTG
129 AAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
*
22681628 ATTTCTTATGCATGGAATGTTC
194 ATTTCTTA-CCATGGAATGTTC
* ** **
22681650 AGAAAATTGCTCGAAGGAATGGATCATCTTGAATACATTAAGGAACCGAAGTTATAACGGAACTC
1 AGAAAATTGCTCGAAAGAATGGATCATCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTC
* * **
22681715 GTAAATGTTTGACAAGTTCAGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGCCAATA
66 GTAAAAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATA
* * * * * *
22681780 AGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAGTGAAAAACTATTTAGACCAAATGATGCAA
130 AGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
22681845 TTTCTCGAGCATGGAATGTTC
195 TTTCT-TACCATGGAATGTTC
* * * * *
22681866 AAAAAATTGCTCGAAGGAATGGATCATCTTCAATATTTTAAGGAATCGAAGTTATAAAAAAACTC
1 AGAAAATTGCTCGAAAGAATGGATCATCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * *
22681931 GTAAAATTTTGACAAGTTTGGAAGTTCGTCTC-ACAACCAATAGAGAAACAATTC
66 GTAAAAGTTTGACAAG-TTCGAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTC
22681985 GATTGTCTTG
Statistics
Matches: 618, Mismatches: 109, Indels: 50
0.80 0.14 0.06
Matches are distributed among these distances:
199 4 0.01
200 25 0.04
201 56 0.09
202 42 0.07
203 36 0.06
204 1 0.00
206 1 0.00
211 2 0.00
213 1 0.00
215 145 0.23
216 251 0.41
217 48 0.08
218 6 0.01
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (214 bp):
AGAAAATTGCTCGAAAGAATGGATCATCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTC
GTAAAAGTTTGACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAA
GTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
TTCTTACCATGGAATGTTC
Found at i:22682021 original size:98 final size:98
Alignment explanation
Indices: 22681902--22682082 Score: 260
Period size: 98 Copynumber: 1.8 Consensus size: 98
22681892 TCTTCAATAT
* *
22681902 TTTAAGGAATCGAAGTTATAAAAAAACTCGTAAAAT-TTTGACAAGTTTGGAAGTTCGTCTCACA
1 TTTAAAGAATCGAAGTTATAAAAAAACTCGT-AAATGTTTGACAAGATTGGAAGTTCGTC-CA-A
*
22681966 -A-CCAATAGAGAAACAATTCGATTGTCTTGTATAC
63 GAGCCAAGAGAGAAACAATTCGATTGTCTTGTATAC
** *
22682000 TTTAAAGAATCGAAGTTATAAAGGAATTCGTAAATGTTTGACAAGATTGGAAGTTCGTCCAAGAG
1 TTTAAAGAATCGAAGTTATAAAAAAACTCGTAAATGTTTGACAAGATTGGAAGTTCGTCCAAGAG
22682065 CCAAGAGAGAAACAATTC
66 CCAAGAGAGAAACAATTC
22682083 TCACATAAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
96 1 0.01
97 7 0.09
98 66 0.89
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (98 bp):
TTTAAAGAATCGAAGTTATAAAAAAACTCGTAAATGTTTGACAAGATTGGAAGTTCGTCCAAGAG
CCAAGAGAGAAACAATTCGATTGTCTTGTATAC
Found at i:22682475 original size:515 final size:522
Alignment explanation
Indices: 22681459--22682463 Score: 1230
Period size: 515 Copynumber: 1.9 Consensus size: 522
22681449 AGAATGTATC
** * *
22681459 GTCTTGAATACTTTATGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTTTACAAGTTCGGATG
1 GTCTTGAATACTTTAAAGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTTGACAAGTTCGGAAG
* * ** * * *
22681524 TTCGTCCATGAACCAATAGAGAAACAATTCTCATGTAAATAAGTTTTTTATTTAAAGACAATATT
66 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACAATAAT
*** * * *
22681589 TGTTTACAAAATGTTAAACTATTTAGACCAAATGATGTGATTTCTTATGCATGGAATGTTCAGAA
131 TGTTTACAAAATAAAAAACTATTTAGACCAAACGATGCGATTTCTGATGCATGGAATGTTCAGAA
* * * *
22681654 AATTGCTCGAAGGAATGGATCATCTTGAATACATTAAGGAACCGAAGTTATAACGGAACTCGTAA
196 AATTGCTCAAAAGAATGGATCATCTTGAATACATT-A--AA-C-AAG-T-TAACGCAAC-AGTAA
* * * * *
22681719 ATGTTTGACAAGTTCAGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGCCAATAAGTT
253 AAGTCTGACAAGTTCAGAAATTCCTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAGTT
* * * *
22681784 TTTAATTCAAAGACCAAAAGTTGATAACAAAGTGAAAAACTATTTAGACCAAATGATGCAATTTC
318 TTTAATTCAAAAACCAAAAGTGGATAACAAAATGAAAAACTATTTAGACAAAATGATGCAATTTC
* * * *
22681849 TCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTTCAATATTTTAAGGAATCG
383 CCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCCTCAATACTTTAAGGAACCG
* *
22681914 AAGTTATAAAAAAACTCGTAAAATTTTGACAAGTTTGGAAGTTCGTCTCACAACCAATAGAGAAA
448 AAGTGATAAAAAAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCTCACAACCAATAGAGAAA
22681979 CAATTCGATT
513 CAATTCGATT
* * * *
22681989 GTCTTGTATACTTTAAAGAATCGAAGTTATAAAGGAATTCGTAAATG-TTTGACAAGATT-GGAA
1 GTCTTGAATACTTTAAAGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTTGACAAG-TTCGGAA
*
22682052 GTTCGTCCAAGAGCCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACTCAA-
65 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGA--CAAT
*
22682116 ACATT-TTTACAAAATAAAAAACTATTTGGACCAAACGATGCGATTTGCTGA-GCATGGAATGTT
128 A-ATTGTTTACAAAATAAAAAACTATTTAGACCAAACGATGCGATTT-CTGATGCATGGAATGTT
* *
22682179 CAGAAAATTGCTCAAAAGAATGGATCGTCTTGAATAC-TT-TA-AAG-T-AC-CAA-AGTAAAAG
191 CAGAAAATTGCTCAAAAGAATGGATCATCTTGAATACATTAAACAAGTTAACGCAACAGTAAAAG
* * * *
22682237 TCTGACAAGTTC-GAAAGTTCCTCTTAA-AACCAAGAGAGAAATAATTCTCACGTAAATGAGTTT
256 TCTGACAAGTTCAGAAA-TTCCTC-CAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAGTTT
* * * *
22682300 TTAATTCAAAAACCAAAA-TAGGGTTACAAAATGACAAACTATTTAGACAAAATGATTCAATTTC
319 TTAATTCAAAAACCAAAAGT-GGATAACAAAATGAAAAACTATTTAGACAAAATGATGCAATTTC
* * * *
22682364 CCGAGCATGGAATGTTCGAAAAATTTCTTGAAGGAATGGATCATCCTGAATACTTTAAGGAACCG
383 CCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCCTCAATACTTTAAGGAACCG
** *
22682429 AAGTGATAAAGGAACTCGTAAAGGTTTGACAAGTT
448 AAGTGATAAAAAAACTCGTAAAAGTTTGACAAGTT
22682464 CTTAAGTTCG
Statistics
Matches: 408, Mismatches: 59, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
514 5 0.01
515 194 0.48
516 2 0.00
517 2 0.00
518 2 0.00
519 1 0.00
522 3 0.01
525 1 0.00
529 65 0.16
530 125 0.31
531 8 0.02
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (522 bp):
GTCTTGAATACTTTAAAGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTTGACAAGTTCGGAAG
TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACAATAAT
TGTTTACAAAATAAAAAACTATTTAGACCAAACGATGCGATTTCTGATGCATGGAATGTTCAGAA
AATTGCTCAAAAGAATGGATCATCTTGAATACATTAAACAAGTTAACGCAACAGTAAAAGTCTGA
CAAGTTCAGAAATTCCTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAGTTTTTAATTC
AAAAACCAAAAGTGGATAACAAAATGAAAAACTATTTAGACAAAATGATGCAATTTCCCGAGCAT
GGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCCTCAATACTTTAAGGAACCGAAGTGATA
AAAAAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCTCACAACCAATAGAGAAACAATTCGA
TT
Found at i:22683056 original size:215 final size:215
Alignment explanation
Indices: 22682583--22683626 Score: 1241
Period size: 215 Copynumber: 4.9 Consensus size: 215
22682573 ATTTCCCGAG
* * * *
22682583 AAAATTGCTCAAAGGAATGGATCTTCTTAAATACTTTATGGAACCGAAGTTGTAAAAGAACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTC--
* * * *
22682648 GTAAAAGTTTGACAAGTTCAGAAGTTCGT-TAAGGAACC-AAGAGAAGCAATTCTCACGTAAATA
64 GTAAAAGTTTGACAAGTTCGGAAGTTCATCCAA-GAACCAAAGAGAAACAATTCTCACGTAAATA
* * * * *
22682711 AGTTTTTAATCCATAGACCAAAACTTGTTTAGAAAATGGCAAACTATTTAGATCAAATGATGCGA
128 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCGA
* * *
22682776 TTTCTCGAGCGTGGAATGTTCGG
193 TTTCTCGAGCATGGAATGCTCGA
* *
22682799 AAAATTGCTCGAAGGAATGGATCAT-TTAAAATACTTTAAGGAACCAAAGTTATAAAAGAACTCG
1 AAAATTGCTCGAAGGAATGGATCGTCTT-AAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG
* *
22682863 TAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAACAA
65 TAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAA-AGAGAAACAATTCTCACGTAAATAA
*
22682928 GTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCGAT
129 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCGAT
*
22682992 TTCTAGAGCATGG-ATGGCTCGA
194 TTCTCGAGCATGGAAT-GCTCGA
* * * * * *
22683014 AAAATTTCTTGAAGGAATGGATCGTCTTGAATACTGTAAGGAACCGAAGTTATAAAAGAGCTCAT
1 AAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * *
22683079 AAAAGTTTAAAAAGTTCGGAAGTT-AGTCCAAGAA-C-AAGAGAAACGATTCTCACATAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCA-TCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAG
* * *
22683141 TTTTTAATTCAAAGA-CAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAAA
130 TTTTTAATTCAAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCGAT
* *
22683205 ATCTCGAGCATGGAATGCTTGA
194 TTCTCGAGCATGGAATGCTCGA
* * * * * * * *
22683227 AAAATTACTCAAAGGAATGGATCGTCTTGAATACTTTGAGGAACCGAAGTTCTTAAATAACTTGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * * * * *
22683292 AAAAGTTTGACAAGTTTGGAATTTCGTCCAGGAATCAAGATAGAAACAATTCTCACGGAAATAAG
66 AAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAA-AGAGAAACAATTCTCACGTAAATAAG
* * * * *
22683357 ATTTTAGTTTAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAG-ACAAAATGATGTGAT
130 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAAC-AAATGATGCGAT
* * ** *
22683421 TTC-CTGTGCATGAAATTTTCGG
194 TTCTC-GAGCATGGAATGCTCGA
* * * * *
22683443 GAAATTGCTCGAAAGAATGGATCGTCTTCAATATTTTAATGAACCGAAGTTATAAAA-AACTCGT
1 AAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
*
22683507 AAAAGGTTGACAAGTTCGGAAGTTCATCTC-AGAACCAATAGAGAAACAATTCTCACGTAAATAA
66 AAAAGTTTGACAAGTTCGGAAGTTCATC-CAAGAACCAA-AGAGAAACAATTCTCACGTAAATAA
* * *
22683571 GTTTTTAATTCAAAGACCAAAACCTATTTACAAAATGACAAACTATTTAGACCAAA
129 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAACAAA
22683627 GAAACACAGA
Statistics
Matches: 706, Mismatches: 103, Indels: 39
0.83 0.12 0.05
Matches are distributed among these distances:
211 1 0.00
212 41 0.06
213 137 0.19
214 40 0.06
215 254 0.36
216 228 0.32
217 5 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (215 bp):
AAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAGT
TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAACAAATGATGCGATTT
CTCGAGCATGGAATGCTCGA
Found at i:22683213 original size:428 final size:424
Alignment explanation
Indices: 22682230--22683626 Score: 1587
Period size: 428 Copynumber: 3.3 Consensus size: 424
22682220 AAGTACCAAA
* * ** * *
22682230 GTAAAAGTCTGACAAGTTCGAAAGTTCCTCTTAA-AACCAAGAGAGAAATAATTCTCACGTAAAT
1 GTAAAAGTTTGACAAGTTCGGAAGTTAGTC-CAAGAACC-A-AGAGAAACAATTCTCACGTAAAT
* * * * * *
22682294 GAGTTTTTAATTCAAAAACCAAAA-TAGGGTTACAAAATGACAAACTATTTAGACAAAATGATTC
63 AAGTTTTTAATTCAAAGACCAAAACT-TGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * *
22682358 AATTTCCCGAGCATGGAATGTTCGAAAAATTTCTTGAAGGAATGGATCATCCTGAATACTTTAAG
127 AATTTCTCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCATCTTGAATACTTTAAG
* * * ** *
22682423 GAACCGAAGTGATAAAGGAACTCGTAAAGGTTTGACAAGTTCTTAAGTTCGTCAAAGAACC-A-A
192 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGA
* * *
22682486 GAGATACAATTCTCACATAAAAAAGTTTTTAATTCAAAGACCAAAACTTGTTTAAAAAATGACAA
257 GAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* * * *
22682551 ACTATTTAGACCAAATGATGCGATTTC---C--CGA---GAAAATTGCTCAAAGGAATGGATCTT
322 ACTATTTAGAACAAATGATGCGATTTCTGGCATGGATTCGAAAATTGCTCGAAGGAATGGATCGT
* *
22682608 CTTAAATACTTTATGGAACCGAAGTTGTAAAAGAACTC
387 CTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * *
22682646 GTGTAAAAGTTTGACAAGTTCAGAAGTTCGT-TAAGGAACCAAGAGAAGCAATTCTCACGTAAAT
1 --GTAAAAGTTTGACAAGTTCGGAAGTTAGTCCAA-GAACCAAGAGAAACAATTCTCACGTAAAT
* * * * * *
22682710 AAGTTTTTAATCCATAGACCAAAACTTGTTTAGAAAATGGCAAACTATTTAGATCAAATGATGCG
63 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCA
* * * *
22682775 ATTTCTCGAGCGTGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCAT-TTAAAATACTTTAAG
128 ATTTCTCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCATCTT-GAATACTTTAAG
* *
22682839 GAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGA
192 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGA
* *
22682904 GAGAAACAATTCTCACGTAAACAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAA
257 GAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* *
22682968 ACTATTTAGAACAAATGATGCGATTTCTAGAGCATGGATGGCTCGAAAAATTTCTTGAAGGAATG
322 ACTATTTAGAACAAATGATGCGATTTCT-G-GCATGGAT---TCG-AAAATTGCTCGAAGGAATG
* * *
22683033 GATCGTCTTGAATACTGTAAGGAACCGAAGTTATAAAAGAGCTC
381 GATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * *
22683077 ATAAAAGTTTAAAAAGTTCGGAAGTTAGTCCAAGAA-CAAGAGAAACGATTCTCACATAAATAAG
1 GTAAAAGTTTGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAG
*
22683141 TTTTTAATTCAAAGA-CAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAAA
66 TTTTTAATTCAAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAAT
* * * *
22683205 ATCTCGAGCATGGAATGCTT-GAAAAATTACTCAAAGGAATGGATCGTCTTGAATACTTTGAGGA
130 TTCTCGAGCATGGAATG-TTCGAAAAATTACTCGAAGGAATGGATCATCTTGAATACTTTAAGGA
* * * * ** * * * *
22683269 ACCGAAGTTCTTAAATAACTTGTAAAAGTTTGACAAGTTTGGAATTTCGTCCAGGAATCAAGATA
194 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
22683334 GAAACAATTCTCACGGAAATAAGATTTTAGTTTAAAGACCAAAATTTGTTTACAAAATGACAAAC
259 GAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * *
22683399 TATTTAG-ACAAAATGATGTGATTTCCTGTGCATGAAATTTTCGGGAAATTGCTCGAAAGAATGG
324 TATTTAGAAC-AAATGATGCGATTT-CTG-GCATG-GA--TTC-GAAAATTGCTCGAAGGAATGG
* * *
22683463 ATCGTCTTCAATATTTTAATGAACCGAAGTTATAAAA-AACTC
382 ATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
*
22683505 GTAAAAGGTTGACAAGTTCGGAAGTTCA-TCTC-AGAACCAATAGAGAAACAATTCTCACGTAAA
1 GTAAAAGTTTGACAAGTTCGGAAGTT-AGTC-CAAGAACC-A-AGAGAAACAATTCTCACGTAAA
* *
22683568 TAAGTTTTTAATTCAAAGACCAAAACCTATTTACAAAATGACAAACTATTTAGACCAAA
62 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
22683627 GAAACACAGA
Statistics
Matches: 831, Mismatches: 111, Indels: 61
0.83 0.11 0.06
Matches are distributed among these distances:
415 1 0.00
416 183 0.22
417 49 0.06
418 69 0.08
422 1 0.00
424 2 0.00
427 5 0.01
428 248 0.30
429 134 0.16
430 8 0.01
431 125 0.15
432 6 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (424 bp):
GTAAAAGTTTGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATT
TCTCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC
CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGA
AACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA
TTTAGAACAAATGATGCGATTTCTGGCATGGATTCGAAAATTGCTCGAAGGAATGGATCGTCTTA
AATACTTTAAGGAACCGAAGTTATAAAAGAACTC
Found at i:22692663 original size:38 final size:38
Alignment explanation
Indices: 22692621--22692699 Score: 131
Period size: 38 Copynumber: 2.1 Consensus size: 38
22692611 ACTAAGTCAT
* *
22692621 TAAGTGAATTCTGCTATAAATAAAATTGCTTTGACAAA
1 TAAGTGAATTCTGCTATAAATAAAATTGATTGGACAAA
*
22692659 TAAGTGAATTTTGCTATAAATAAAATTGATTGGACAAA
1 TAAGTGAATTCTGCTATAAATAAAATTGATTGGACAAA
22692697 TAA
1 TAA
22692700 AACTTTTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (38 bp):
TAAGTGAATTCTGCTATAAATAAAATTGATTGGACAAA
Found at i:22696224 original size:12 final size:12
Alignment explanation
Indices: 22696207--22696324 Score: 59
Period size: 12 Copynumber: 10.1 Consensus size: 12
22696197 GTTTTTTTAC
22696207 TGTTTTGGTTGT
1 TGTTTTGGTTGT
22696219 TGTTTTTTGG-TGT
1 TG--TTTTGGTTGT
* **
22696232 TATTTT--TTAC
1 TGTTTTGGTTGT
22696242 TGTTTT-GTTGT
1 TGTTTTGGTTGT
*
22696253 TGTTTTGG-TGC
1 TGTTTTGGTTGT
* *
22696264 TATTTT-TTATGT
1 TGTTTTGGT-TGT
* *
22696276 TATTTTTGTTGT
1 TGTTTTGGTTGT
*
22696288 TGTTTTTGTTGT
1 TGTTTTGGTTGT
* * *
22696300 TATTTTTGTTGC
1 TGTTTTGGTTGT
22696312 TGTTTTGGTTGT
1 TGTTTTGGTTGT
22696324 T
1 T
22696325 TGGATGTTAT
Statistics
Matches: 81, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
10 6 0.07
11 19 0.23
12 45 0.56
13 5 0.06
14 6 0.07
ACGTcount: A:0.05, C:0.03, G:0.23, T:0.69
Consensus pattern (12 bp):
TGTTTTGGTTGT
Found at i:22696238 original size:35 final size:34
Alignment explanation
Indices: 22696190--22696324 Score: 136
Period size: 32 Copynumber: 3.9 Consensus size: 34
22696180 TATATTATTA
22696190 TTTTGGTG-T-TTTTTTACTGTTTTGGTTGTTGTT
1 TTTTGGTGTTATTTTTTACTGTTTT-GTTGTTGTT
22696223 TTTTGGTGTTATTTTTTACTGTTTTGTTGTTG--
1 TTTTGGTGTTATTTTTTACTGTTTTGTTGTTGTT
* *
22696255 TTTTGGTGCTATTTTTTA-TGTTATTTTTGTTGTTGT
1 TTTTGGTGTTATTTTTTACTGTT-TTGTTGTTG-T-T
* *
22696291 TTTTGTTGTTATTTTTGTTGCTGTTTTGGTTGTT
1 TTTTGGTGTTA-TTTT-TTACTGTTTT-GTTGTT
22696325 TGGATGTTAT
Statistics
Matches: 85, Mismatches: 6, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
31 4 0.05
32 25 0.29
33 8 0.09
34 8 0.09
35 14 0.16
36 9 0.11
37 4 0.05
38 4 0.05
39 9 0.11
ACGTcount: A:0.05, C:0.03, G:0.22, T:0.70
Consensus pattern (34 bp):
TTTTGGTGTTATTTTTTACTGTTTTGTTGTTGTT
Found at i:22696282 original size:24 final size:24
Alignment explanation
Indices: 22696215--22696324 Score: 99
Period size: 24 Copynumber: 4.8 Consensus size: 24
22696205 ACTGTTTTGG
*
22696215 TTGTTG-T-TTTTTGGTGTTA-TT
1 TTGTTGCTGTTTTTGTTGTTATTT
* *
22696236 TT-TTACTG-TTTTGTTGTT-GTT
1 TTGTTGCTGTTTTTGTTGTTATTT
* *
22696257 TTGGTGCTATTTTT-TATGTTATTT
1 TTGTTGCTGTTTTTGT-TGTTATTT
*
22696281 TTGTTGTTGTTTTTGTTGTTATTT
1 TTGTTGCTGTTTTTGTTGTTATTT
*
22696305 TTGTTGCTGTTTTGGTTGTT
1 TTGTTGCTGTTTTTGTTGTT
22696325 TGGATGTTAT
Statistics
Matches: 70, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
20 2 0.03
21 16 0.23
22 4 0.06
23 8 0.11
24 39 0.56
25 1 0.01
ACGTcount: A:0.05, C:0.03, G:0.22, T:0.70
Consensus pattern (24 bp):
TTGTTGCTGTTTTTGTTGTTATTT
Found at i:22696323 original size:68 final size:68
Alignment explanation
Indices: 22696209--22696338 Score: 167
Period size: 68 Copynumber: 1.9 Consensus size: 68
22696199 TTTTTTACTG
22696209 TTTTGGTTGTTGTTTTTTGGTGTTATTTTTTACTGTTTTGTTGTTGTTTTGG-TGCTATTTTTTA
1 TTTTGGTTGTTGTTTTTTGGTGTTATTTTTTACTGTTTTG-TGTTG-TTTGGATGCTATTTTTTA
22696273 TGTTA
64 TGTTA
* * * *
22696278 TTTTTGTTGTTG-TTTTTGTTGTTATTTTTGTTGCTGTTTTG-GTTGTTTGGATGTTATTTTT
1 TTTTGGTTGTTGTTTTTTGGTGTTA-TTTT-TTACTGTTTTGTGTTGTTTGGATGCTATTTTT
22696339 ATGCGTTTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
67 5 0.09
68 24 0.44
69 15 0.28
70 10 0.19
ACGTcount: A:0.06, C:0.02, G:0.22, T:0.69
Consensus pattern (68 bp):
TTTTGGTTGTTGTTTTTTGGTGTTATTTTTTACTGTTTTGTGTTGTTTGGATGCTATTTTTTATG
TTA
Found at i:22698075 original size:31 final size:30
Alignment explanation
Indices: 22698005--22698076 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 30
22697995 AGTTTTAGAT
22698005 TCCTTAAAAGTTGGAAAAAAAAAATTTAGG
1 TCCTTAAAAGTTGGAAAAAAAAAATTTAGG
* * *
22698035 T-CTAATAAAAGTTGGAAAATAAAATTTTTGG
1 TCCT--TAAAAGTTGGAAAAAAAAAATTTAGG
22698066 ATCCTTAAAAG
1 -TCCTTAAAAG
22698077 CTAAAAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
29 2 0.06
30 1 0.03
31 29 0.83
32 1 0.03
33 2 0.06
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.31
Consensus pattern (30 bp):
TCCTTAAAAGTTGGAAAAAAAAAATTTAGG
Found at i:22701243 original size:25 final size:23
Alignment explanation
Indices: 22701198--22701262 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 23
22701188 TGCTTTTAAT
* **
22701198 TTTTTGTAACTCACCAATTATTA
1 TTTTTGTAACTCTCCTGTTATTA
22701221 TTATTTTGTAACTCTCCTGTTATTA
1 -T-TTTTGTAACTCTCCTGTTATTA
* *
22701246 TGTTTGTAACTTTCCTG
1 TTTTTGTAACTCTCCTG
22701263 CCATAATGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 14 0.40
24 2 0.06
25 19 0.54
ACGTcount: A:0.22, C:0.17, G:0.09, T:0.52
Consensus pattern (23 bp):
TTTTTGTAACTCTCCTGTTATTA
Done.