Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 77 of 132
Found at i:22701246 original size:22 final size:23
Alignment explanation
Indices: 22701218--22701262 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
22701208 TCACCAATTA
22701218 TTATTAT-TTTGTAACTCTCCTG
1 TTATTATGTTTGTAACTCTCCTG
*
22701240 TTATTATGTTTGTAACTTTCCTG
1 TTATTATGTTTGTAACTCTCCTG
22701263 CCATAATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.18, C:0.16, G:0.11, T:0.56
Consensus pattern (23 bp):
TTATTATGTTTGTAACTCTCCTG
Found at i:22701271 original size:23 final size:23
Alignment explanation
Indices: 22701225--22701273 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
22701215 TTATTATTAT
** *
22701225 TTTGTAACTCTCCTGTTATTATG
1 TTTGTAACTCTCCTGCCATAATG
*
22701248 TTTGTAACTTTCCTGCCATAATG
1 TTTGTAACTCTCCTGCCATAATG
22701271 TTT
1 TTT
22701274 TGTTTTAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.18, G:0.12, T:0.51
Consensus pattern (23 bp):
TTTGTAACTCTCCTGCCATAATG
Found at i:22708462 original size:26 final size:26
Alignment explanation
Indices: 22708425--22708476 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22708415 GATAGTATCT
*
22708425 ATAACAATATCTATAAATATCCCAAC
1 ATAACAACATCTATAAATATCCCAAC
*
22708451 ATAACAACATCTATAAATATCTCAAC
1 ATAACAACATCTATAAATATCCCAAC
22708477 GTTTCTATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (26 bp):
ATAACAACATCTATAAATATCCCAAC
Found at i:22710307 original size:29 final size:27
Alignment explanation
Indices: 22710226--22710322 Score: 86
Period size: 29 Copynumber: 3.3 Consensus size: 27
22710216 AAAAAATTTA
* *
22710226 AACTTTAAAAGGCCAAAATTATTTTTACC
1 AACTTTTAAAGGCC-AAATT-TTTTTATC
* *
22710255 AACTTTTAAGGGTTCAAATATTTTTTATC
1 AACTTTTAAAGG-CCAAAT-TTTTTTATC
*
22710284 AACTTTTAAAGGACCTAAATTTTTTTCTC
1 AACTTTTAAAGG-CC-AAATTTTTTTATC
22710313 TAACTTTTAA
1 -AACTTTTAA
22710323 GTAACCTAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
29 41 0.73
30 15 0.27
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.43
Consensus pattern (27 bp):
AACTTTTAAAGGCCAAATTTTTTTATC
Found at i:22710330 original size:30 final size:29
Alignment explanation
Indices: 22710270--22710337 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
22710260 TTAAGGGTTC
*
22710270 AAATATTTTTTATCAACTTTTAAAGGACCT
1 AAAT-TTTTTTATCAACTTTTAAAGAACCT
*
22710300 AAATTTTTTTCTCTAACTTTT-AAGTAACCT
1 AAATTTTTTTATC-AACTTTTAAAG-AACCT
*
22710330 AAAATTTT
1 AAATTTTT
22710338 ATTTTATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 11 0.33
30 22 0.67
ACGTcount: A:0.35, C:0.13, G:0.04, T:0.47
Consensus pattern (29 bp):
AAATTTTTTTATCAACTTTTAAAGAACCT
Found at i:22710481 original size:21 final size:21
Alignment explanation
Indices: 22710457--22710498 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22710447 TATTGAATAC
*
22710457 TTTAGATTCATAATTATTTCT
1 TTTAGATGCATAATTATTTCT
* *
22710478 TTTAGATGCATATTTTTTTCT
1 TTTAGATGCATAATTATTTCT
22710499 AATCAACAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.10, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTAGATGCATAATTATTTCT
Found at i:22712271 original size:65 final size:65
Alignment explanation
Indices: 22712167--22712333 Score: 273
Period size: 65 Copynumber: 2.6 Consensus size: 65
22712157 ACCTCTGCTT
* *
22712167 CCTTTGCTTGC-CTCGCTGCTGCCTCCACTTTAAGTTGTAGGTGGAGTTCATCATATTTTTTTGA
1 CCTTTGCTT-CTCTCGCTGCAGCCTCCTCTTTAAGTTGTAGGTGGAGTTCATCATATTTTTTTGA
22712231 G
65 G
* *
22712232 CCTTTGCTTCTCTGGCTGCAGCCTCCTCTTTAAGTTGTAGGTGGAGTTCATCATATTTTTTTTAG
1 CCTTTGCTTCTCTCGCTGCAGCCTCCTCTTTAAGTTGTAGGTGGAGTTCATCATATTTTTTTGAG
*
22712297 CCTCTGCTTCTCTCGCTGCAGCCTCCTCTTTAAGTTG
1 CCTTTGCTTCTCTCGCTGCAGCCTCCTCTTTAAGTTG
22712334 AGCAATTTGC
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
64 1 0.01
65 94 0.99
ACGTcount: A:0.13, C:0.26, G:0.20, T:0.42
Consensus pattern (65 bp):
CCTTTGCTTCTCTCGCTGCAGCCTCCTCTTTAAGTTGTAGGTGGAGTTCATCATATTTTTTTGAG
Found at i:22717879 original size:8 final size:8
Alignment explanation
Indices: 22717862--22718536 Score: 75
Period size: 8 Copynumber: 84.6 Consensus size: 8
22717852 TTATAATTAA
22717862 AAATAATT
1 AAATAATT
22717870 AAAT-ATT
1 AAATAATT
22717877 ---TAATT
1 AAATAATT
22717882 AAATAATT
1 AAATAATT
22717890 AAAT-ATT
1 AAATAATT
*
22717897 --TTCAATT
1 AAAT-AATT
22717904 AAATAATT
1 AAATAATT
22717912 AAATATAATT
1 -AA-ATAATT
22717922 AAATAATT
1 AAATAATT
22717930 ATATATAATT
1 A-A-ATAATT
** *
22717940 ATTTACA-G
1 AAATA-ATT
*
22717948 AAATATTTT
1 AAATA-ATT
*
22717957 AAATTAAAT
1 AAA-TAATT
**
22717966 AGTTAATT
1 AAATAATT
22717974 AAATAATT
1 AAATAATT
*
22717982 AATTGATACTGT
1 AA---ATAAT-T
**
22717994 TTATAATT
1 AAATAATT
22718002 AAAT-A-T
1 AAATAATT
22718008 --ATAATT
1 AAATAATT
22718014 AAACATAATT
1 -AA-ATAATT
22718024 AAATAATTT
1 AAATAA-TT
22718033 AATATAATT
1 AA-ATAATT
** *
22718042 ATTTACTTT
1 AAATA-ATT
22718051 AATATAATT
1 AA-ATAATT
22718060 AAATAATT
1 AAATAATT
*
22718068 AAAT-CTT
1 AAATAATT
**
22718075 TTA-AATT
1 AAATAATT
*
22718082 AAATATTT
1 AAATAATT
*
22718090 AATTAATT
1 AAATAATT
* *
22718098 -GATACTGT
1 AAATAAT-T
**
22718106 TTATAATT
1 AAATAATT
22718114 AAAT-A-T
1 AAATAATT
22718120 --ATAATT
1 AAATAATT
22718126 AAACATAATT
1 -AA-ATAATT
22718136 AAATAATT
1 AAATAATT
22718144 AAATATAATT
1 -AA-ATAATT
**
22718154 ATTTAATT
1 AAATAATT
22718162 AAATATAATT
1 -AA-ATAATT
22718172 AAATAATT
1 AAATAATT
*
22718180 AAAT-CTT
1 AAATAATT
**
22718187 TTA-AATT
1 AAATAATT
*
22718194 AAATATTT
1 AAATAATT
* *
22718202 AATTAACT
1 AAATAATT
*
22718210 -AATACTGT
1 AAATAAT-T
**
22718218 TTATAATT
1 AAATAATT
22718226 AAAT-A-T
1 AAATAATT
22718232 --ATAATT
1 AAATAATT
*
22718238 AAACATAGTT
1 -AA-ATAATT
22718248 AAATAATT
1 AAATAATT
22718256 AAATATAGTT
1 AAATA-A-TT
** *
22718266 ATTTACTT
1 AAATAATT
*
22718274 TAAT-ATT
1 AAATAATT
**
22718281 TTA-AATT
1 AAATAATT
22718288 AAAT-ATT
1 AAATAATT
22718295 AAATTAA--
1 AAA-TAATT
*
22718302 ATATAATT
1 AAATAATT
22718310 AAATAATT
1 AAATAATT
*
22718318 AAA-ATTT
1 AAATAATT
**
22718325 TCA-AATT
1 AAATAATT
*
22718332 AAATATTT
1 AAATAATT
*
22718340 AATTAATT
1 AAATAATT
*
22718348 -AATACTGT
1 AAATAAT-T
**
22718356 TTATAATT
1 AAATAATT
*
22718364 AAATATTT
1 AAATAATT
*
22718372 AATTAA--
1 AAATAATT
*
22718378 ACATAATT
1 AAATAATT
22718386 AAATAATT
1 AAATAATT
22718394 AAATATAATT
1 -AA-ATAATT
**
22718404 ATTTAATT
1 AAATAATT
*
22718412 AAATATTTT
1 AAATA-ATT
*
22718421 AAATTAAAT
1 AAA-TAATT
**
22718430 ATTTAATT
1 AAATAATT
22718438 AAATATAATT
1 -AA-ATAATT
22718448 AAATAATT
1 AAATAATT
*
22718456 AAA-ATTT
1 AAATAATT
**
22718463 TCA-AATT
1 AAATAATT
22718470 AAAT-ATT
1 AAATAATT
*
22718477 AAATTAACT
1 AAA-TAATT
*
22718486 -AATACTGT
1 AAATAAT-T
**
22718494 TTATAATT
1 AAATAATT
*
22718502 AAATATTT
1 AAATAATT
*
22718510 AATTAA--
1 AAATAATT
*
22718516 ACATAATT
1 AAATAATT
22718524 AAATAATT
1 AAATAATT
22718532 AAATA
1 AAATA
22718537 TAATTATTTA
Statistics
Matches: 456, Mismatches: 132, Indels: 158
0.61 0.18 0.21
Matches are distributed among these distances:
4 7 0.02
5 7 0.02
6 17 0.04
7 74 0.16
8 204 0.45
9 75 0.16
10 67 0.15
11 4 0.01
12 1 0.00
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (8 bp):
AAATAATT
Found at i:22717881 original size:22 final size:20
Alignment explanation
Indices: 22717862--22718203 Score: 113
Period size: 18 Copynumber: 17.5 Consensus size: 20
22717852 TTATAATTAA
22717862 AAATAATTAAATATTTAATT
1 AAATAATTAAATATTTAATT
22717882 AAATAATTAAATATTTTCAATT
1 AAATAATTAAATA-TTT-AATT
22717904 AAATAATTAAATA--TAATT
1 AAATAATTAAATATTTAATT
*
22717922 AAATAATT--ATATATAATT
1 AAATAATTAAATATTTAATT
** *
22717940 ATTTACA-GAAATA-TT--TT
1 AAATA-ATTAAATATTTAATT
*
22717957 --A-AATTAAATAGTTAATT
1 AAATAATTAAATATTTAATT
* *
22717974 AAATAATT-AAT-TGATACTGT
1 AAATAATTAAATAT-TTAAT-T
** *
22717994 TTATAATTAAATATATAATT
1 AAATAATTAAATATTTAATT
22718014 AAACATAATTAAATAATTTAATAT
1 -AA-ATAATTAAAT-ATTTAAT-T
* * ** *
22718038 AATTATTTACTTTAATATAATT
1 AAATAATTA-AAT-ATTTAATT
*
22718060 AAATAATTAAAT-CTT--TT
1 AAATAATTAAATATTTAATT
22718077 --A-AATTAAATATTTAATT
1 AAATAATTAAATATTTAATT
* ** * *
22718094 AATTGATACTGTTTATAATTAAAT
1 AA---ATAAT-TAAATATTTAATT
* *
22718118 ATATAATTAAACA--TAATT
1 AAATAATTAAATATTTAATT
22718136 AAATAATTAAATA--TAATT
1 AAATAATTAAATATTTAATT
**
22718154 ATTTAATTAAATA--TAATT
1 AAATAATTAAATATTTAATT
*
22718172 AAATAATTAAATCTTTTAAATT
1 AAATAATTAAAT-ATTT-AATT
*
22718194 AAATATTTAA
1 AAATAATTAA
22718204 TTAACTAATA
Statistics
Matches: 239, Mismatches: 46, Indels: 72
0.67 0.13 0.20
Matches are distributed among these distances:
13 1 0.00
14 14 0.06
15 5 0.02
16 3 0.01
17 8 0.03
18 66 0.28
19 11 0.05
20 31 0.13
21 16 0.07
22 55 0.23
23 18 0.08
24 11 0.05
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (20 bp):
AAATAATTAAATATTTAATT
Found at i:22717881 original size:51 final size:49
Alignment explanation
Indices: 22717786--22717881 Score: 140
Period size: 49 Copynumber: 1.9 Consensus size: 49
22717776 ATTTTACTTA
*
22717786 AATATTTGGGCTGTTTTTATTAATTAAATAATTAAATATTTAATTTGGG
1 AATAGTTGGGCTGTTTTTATTAATTAAATAATTAAATATTTAATTTGGG
*
22717835 AATAGTTGGGTTGTTTTT-TATAATTAAAAATAATTAAATATTTAATT
1 AATAGTTGGGCTGTTTTTAT-TAATT--AAATAATTAAATATTTAATT
22717882 AAATAATTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
48 1 0.02
49 21 0.50
51 20 0.48
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.49
Consensus pattern (49 bp):
AATAGTTGGGCTGTTTTTATTAATTAAATAATTAAATATTTAATTTGGG
Found at i:22718000 original size:112 final size:114
Alignment explanation
Indices: 22717884--22718319 Score: 391
Period size: 112 Copynumber: 3.9 Consensus size: 114
22717874 ATTTAATTAA
** **
22717884 ATAATTAAATAT-T-TT-C-AATTAAATAATTAAATATAATTAAATAATTATATATAATTATTTA
1 ATAATTAAATATATATTACAAATTAAATAATTAAATATAATTATTTAATTATATATAATTAAATA
* *
22717945 CA-GAAATATTTTAAATTAAATAGTTAATTAAATAATTAATTGATACTGTTT
66 -ATTAAATCTTTTAAATTAAATA-TTAATT-AATAATTAATTGATACTGTTT
* *
22717996 ATAATTAAATATATAATTAAACATAATTAAATAATTTAATATAATTATTTACTT-TAATATAATT
1 ATAATTAAATATAT-ATT--ACA-AATTAAATAATTAAATATAATTATTTAATTAT-ATATAATT
22718060 AAATAATTAAATCTTTTAAATT-AA-A-T-ATT--TAATTAATTGATACTGTTT
61 AAATAATTAAATCTTTTAAATTAAATATTAATTAATAATTAATTGATACTGTTT
*
22718108 ATAATTAAATATATAATTAAACATAATTAAATAATTAAATATAATTATTTAATTAAATATAATTA
1 ATAATTAAATATAT-ATT--ACA-AATTAAATAATTAAATATAATTATTTAATTATATATAATTA
* *
22718173 AATAATTAAATCTTTTAAATT-AA-A-T-ATT--TAATTAACTAATACTGTTT
62 AATAATTAAATCTTTTAAATTAAATATTAATTAATAATTAATTGATACTGTTT
* * * *
22718220 ATAATTAAATATATAATTAAACATAGTTAAATAATTAAATATAGTTATTTACTT-TA-AT-ATTT
1 ATAATTAAATATAT-ATT--ACA-AATTAAATAATTAAATATAATTATTTAATTATATATAATTA
* *
22718282 TA-AATTAAA--TATTAAATTAAATA-TAATTAAATAATTAA
62 AATAATTAAATCTTTTAAATTAAATATTAATT-AATAATTAA
22718320 AATTTTCAAA
Statistics
Matches: 287, Mismatches: 20, Indels: 34
0.84 0.06 0.10
Matches are distributed among these distances:
106 8 0.03
107 2 0.01
108 9 0.03
109 7 0.02
110 2 0.01
111 1 0.00
112 195 0.68
113 1 0.00
115 5 0.02
116 1 0.00
118 2 0.01
119 4 0.01
120 50 0.17
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.44
Consensus pattern (114 bp):
ATAATTAAATATATATTACAAATTAAATAATTAAATATAATTATTTAATTATATATAATTAAATA
ATTAAATCTTTTAAATTAAATATTAATTAATAATTAATTGATACTGTTT
Found at i:22718024 original size:120 final size:112
Alignment explanation
Indices: 22717977--22718270 Score: 509
Period size: 112 Copynumber: 2.6 Consensus size: 112
22717967 GTTAATTAAA
*
22717977 TAATTAATTGATACTGTTTATAATTAAATATATAATTAAACATAATTAAATAATTTAATATAATT
1 TAATTAATTGATACTGTTTATAATTAAATATATAATTAAACATAATTAAATAATTAAATATAATT
*
22718042 ATTTACTT-TAATATAATTAAATAATTAAATCTTTTAAATTAAATATT
66 ATTTAATTAT-ATATAATTAAATAATTAAATCTTTTAAATTAAATATT
22718089 TAATTAATTGATACTGTTTATAATTAAATATATAATTAAACATAATTAAATAATTAAATATAATT
1 TAATTAATTGATACTGTTTATAATTAAATATATAATTAAACATAATTAAATAATTAAATATAATT
*
22718154 ATTTAATTAAATATAATTAAATAATTAAATCTTTTAAATTAAATATT
66 ATTTAATTATATATAATTAAATAATTAAATCTTTTAAATTAAATATT
* * * *
22718201 TAATTAACTAATACTGTTTATAATTAAATATATAATTAAACATAGTTAAATAATTAAATATAGTT
1 TAATTAATTGATACTGTTTATAATTAAATATATAATTAAACATAATTAAATAATTAAATATAATT
22718266 ATTTA
66 ATTTA
22718271 CTTTAATATT
Statistics
Matches: 174, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
112 174 1.00
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.45
Consensus pattern (112 bp):
TAATTAATTGATACTGTTTATAATTAAATATATAATTAAACATAATTAAATAATTAAATATAATT
ATTTAATTATATATAATTAAATAATTAAATCTTTTAAATTAAATATT
Found at i:22718061 original size:36 final size:36
Alignment explanation
Indices: 22718005--22718542 Score: 183
Period size: 36 Copynumber: 14.6 Consensus size: 36
22717995 TATAATTAAA
* *
22718005 TATATAATTAAACATAATTAAATAATTTAATATAAT
1 TATATAATTAAATATAATTAAATAATTAAATATAAT
* * * *
22718041 TATTTACTTTAATATAATTAAATAATTAAATCT--T
1 TATATAATTAAATATAATTAAATAATTAAATATAAT
* *
22718075 T-TA-AATTAAATATTTAATTAATTGATACTGTTTATAAT-TAAA
1 TATATAATTAAATA--TAATTAA---ATA---ATTA-AATATAAT
*
22718117 TATATAATTAAACATAATTAAATAATTAAATATAAT
1 TATATAATTAAATATAATTAAATAATTAAATATAAT
* *
22718153 TATTTAATTAAATATAATTAAATAATTAAATCT--T
1 TATATAATTAAATATAATTAAATAATTAAATATAAT
* *
22718187 T-TA-AATTAAATATTTAATTAACTAATACTGTTTATAAT-TAAA
1 TATATAATTAAATA--TAATT-A--AATA---ATTA-AATATAAT
* * *
22718229 TATATAATTAAACATAGTTAAATAATTAAATATAGT
1 TATATAATTAAATATAATTAAATAATTAAATATAAT
* * *
22718265 TATTTACTTTAATATTTTAAATTAAAT-ATTAAAT-TAA-
1 TATATA-ATTAA-A-TAT-AATTAAATAATTAAATATAAT
* *
22718302 -ATATAATT-AA-ATAATTAAA-ATTTTCAAAT-TAAA
1 TATATAATTAAATATAATTAAATA-ATT-AAATATAAT
* * ** *
22718335 TATTTAATT-AAT-TAA-T-ACTGTTTATAAT-TAAA
1 TATATAATTAAATATAATTAAATAATTA-AATATAAT
* *
22718367 TATTTAATTAAACATAATTAAATAATTAAATATAAT
1 TATATAATTAAATATAATTAAATAATTAAATATAAT
*
22718403 TATTTAATTAAATATTTTAAATTAAATATTTAATTAAATATAAT
1 TATATAATTAAATA---T-AATT-AA-A--TAATTAAATATAAT
* *
22718447 TAAATAATTAAAATTTTCAAATTAAAT-ATTAAAT-TAACT
1 TATATAATT-AAA-TAT--AATTAAATAATTAAATATAA-T
* ** * ** *
22718486 AATACTGTTTATAAT-TAAATATTTAATTAAACATAAT
1 TATA-TAATTA-AATATAATTAAATAATTAAATATAAT
*
22718523 TAAATAATTAAATATAATTA
1 TATATAATTAAATATAATTA
22718543 TTTACTTTAA
Statistics
Matches: 380, Mismatches: 60, Indels: 124
0.67 0.11 0.22
Matches are distributed among these distances:
30 7 0.02
31 4 0.01
32 43 0.11
33 6 0.02
34 32 0.08
35 16 0.04
36 112 0.29
37 20 0.05
38 10 0.03
39 28 0.07
40 25 0.07
41 9 0.02
42 15 0.04
43 7 0.02
44 42 0.11
45 3 0.01
46 1 0.00
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (36 bp):
TATATAATTAAATATAATTAAATAATTAAATATAAT
Found at i:22718133 original size:10 final size:10
Alignment explanation
Indices: 22718107--22718542 Score: 87
Period size: 12 Copynumber: 41.8 Consensus size: 10
22718097 TGATACTGTT
22718107 TATAATTAAATA
1 TATAATT-AA-A
22718119 TATAATTAAA
1 TATAATTAAA
*
22718129 CATAATT-AA
1 TATAATTAAA
22718138 -ATAATTAAA
1 TATAATTAAA
22718147 TATAATT--A
1 TATAATTAAA
*
22718155 TTTAATTAAA
1 TATAATTAAA
22718165 TATAATT-AA
1 TATAATTAAA
22718174 -ATAATTAAA
1 TATAATTAAA
*
22718183 TCTTTTAAATTAAA
1 ---TAT-AATTAAA
*
22718197 TATTTAATTAAC
1 TA--TAATTAAA
* *
22718209 TAATACTGT--T
1 T-ATAAT-TAAA
22718219 TATAATTAAATA
1 TATAATT-AA-A
22718231 TATAATTAAA
1 TATAATTAAA
* *
22718241 CATAGTT-AA
1 TATAATTAAA
22718250 -ATAATTAAA
1 TATAATTAAA
*
22718259 TATAGTT--A
1 TATAATTAAA
* *
22718267 TTTACTTTAATA
1 TATA-ATTAA-A
*
22718279 TTTTAAATTAAA
1 -TAT-AATTAAA
22718291 TATTAAATTAAA
1 TA-T-AATTAAA
22718303 TATAATT-AA
1 TATAATTAAA
22718312 -ATAATTAAAA
1 TATAATT-AAA
*
22718322 TTTTCAAATTAAA
1 -TAT--AATTAAA
22718335 TATTTAATT-AA
1 TA--TAATTAAA
***
22718346 T-TAATACTGTT
1 TATAAT--TAAA
22718357 TATAATTAAA
1 TATAATTAAA
22718367 TATTTAATTAAA
1 TA--TAATTAAA
*
22718379 CATAATT-AA
1 TATAATTAAA
22718388 -ATAATTAAA
1 TATAATTAAA
22718397 TATAATT--A
1 TATAATTAAA
*
22718405 TTTAATTAAA
1 TATAATTAAA
22718415 TATTTTAAATTAAA
1 TA---T-AATTAAA
22718429 TATTTAATTAAA
1 TA--TAATTAAA
22718441 TATAATT-AA
1 TATAATTAAA
22718450 -ATAATTAAAA
1 TATAATT-AAA
*
22718460 TTTTCAAATTAAA
1 -TAT--AATTAAA
*
22718473 TATTAAATTAAC
1 TA-T-AATTAAA
* *
22718485 TAATACTGT--T
1 T-ATAAT-TAAA
22718495 TATAATTAAA
1 TATAATTAAA
22718505 TATTTAATTAAA
1 TA--TAATTAAA
*
22718517 CATAATT-AA
1 TATAATTAAA
22718526 -ATAATTAAA
1 TATAATTAAA
22718535 TATAATTA
1 TATAATTA
22718543 TTTACTTTAA
Statistics
Matches: 324, Mismatches: 36, Indels: 130
0.66 0.07 0.27
Matches are distributed among these distances:
8 65 0.20
9 34 0.10
10 77 0.24
11 16 0.05
12 84 0.26
13 22 0.07
14 26 0.08
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (10 bp):
TATAATTAAA
Found at i:22718146 original size:76 final size:75
Alignment explanation
Indices: 22718054--22718419 Score: 222
Period size: 80 Copynumber: 4.5 Consensus size: 75
22718044 TTACTTTAAT
*
22718054 ATAATTAAATAATTAAATCTT-TTAAATTAAATATTTAATTAATTGATACTGTTTATAATTAAAT
1 ATAATTAAATAATTAAATATTATTAAATTAAATATTTAATTAATT-ATACT-TTTATAATTAAAT
22718118 ATATAATTAAAC
64 ATATAATTAAAC
* * *
22718130 ATAATTAAATAATTAAATATAATTATTTAATTAAATATAATTAAATAATTAAATCTTTTA-AATT
1 ATAATTAAATAATT-AA-AT-ATTATTAAATTAAATAT--TTAATTAATTATA-CTTTTATAATT
*
22718194 AAATATTTAATT-AAC
60 AAATATATAATTAAAC
* ** * *
22718209 TAATACTGTTTATAATTAAATATATAATTAAACATAGTTAAATAATTAAATATAGTTATTTACTT
1 --ATAAT-TAAATAATTAAATAT-T-ATT--A-A-A-TTAAAT-ATTTAAT-TAATTA--TACTT
* * * * *
22718274 TAATATTTTAA-ATTAAATATTAAATTAAAT
52 TTATAATTAAATA-TATA------ATTAAAC
22718304 ATAATTAAATAATTAAA-ATT-TTCAAATTAAATATTTAATTAATTAATACTGTTTATAATTAAA
1 ATAATTAAATAATTAAATATTATT-AAATTAAATATTTAATTAATT-ATACT-TTTATAATTAAA
*
22718367 TATTTAATTAAAC
63 TATATAATTAAAC
*
22718380 ATAATTAAATAATTAAATATAATTATTTAATTAAATATTT
1 ATAATTAAATAATT-AA-AT-ATTATTAAATTAAATATTT
22718420 TAAATTAAAT
Statistics
Matches: 220, Mismatches: 32, Indels: 72
0.68 0.10 0.22
Matches are distributed among these distances:
76 34 0.15
77 4 0.02
78 3 0.01
79 7 0.03
80 45 0.20
81 21 0.10
82 33 0.15
83 8 0.04
84 7 0.03
85 5 0.02
86 12 0.05
87 9 0.04
88 10 0.05
90 1 0.00
91 2 0.01
92 10 0.05
93 4 0.02
94 3 0.01
95 2 0.01
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (75 bp):
ATAATTAAATAATTAAATATTATTAAATTAAATATTTAATTAATTATACTTTTATAATTAAATAT
ATAATTAAAC
Found at i:22718190 original size:138 final size:137
Alignment explanation
Indices: 22718053--22718538 Score: 530
Period size: 138 Copynumber: 3.5 Consensus size: 137
22718043 TTTACTTTAA
** *
22718053 TATAATTAAATAATTAA-ATCT-TTTA-AATTAAATATTTAATTAATTGATACTGTTTATAATTA
1 TATAATTAAATAATTAATA-CTGTTTATAATTAAATATTTAATTAA-ACATA-TGTTAATAATTA
* *
22718115 AATATATAATTAAACATAATTAAATA-ATTAAATATAATTATTTAATTAAATATAATTAAATAAT
63 AATATATAATT--AC-TAATTAAATATTTTAAAT-TAAATATTTAATTAAATATAATTAAATAAT
*
22718179 T-AAATCTTTTAAAT
124 TAAAAT-TTTCAAAT
* * * *
22718193 TAAATATTTAATTAACTAATACTGTTTATAATTAAATATATAATTAAACATA-GTTAAATAATTA
1 T--ATAATTAAATAATTAATACTGTTTATAATTAAATATTTAATTAAACATATGTT-AATAATTA
* *
22718257 AATATAGTTATTTACT--TT-AATATTTTAAATTAAATATTAAATTAAATATAATTAAATAATTA
63 AATATA--TAATTACTAATTAAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTA
22718319 AAATTTTCAAAT
126 AAATTTTCAAAT
* * *
22718331 TAAATATTTAATTAATTAATACTGTTTATAATTAAATATTTAATTAAACATAAT-TAAATAATT-
1 T--ATAATTAAATAATTAATACTGTTTATAATTAAATATTTAATTAAACAT-ATGTTAATAATTA
*
22718394 AA-ATATAATTATTTAATTAAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTAA
63 AATATATAATTA-CTAATTAAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTAA
22718458 AATTTTCAAAT
127 AATTTTCAAAT
* * *
22718469 TAAATATTAAATTAACTAATACTGTTTATAATTAAATATTTAATTAAACATAAT-TAAATAATTA
1 TATA-ATTAAA-TAATTAATACTGTTTATAATTAAATATTTAATTAAACAT-ATGTTAATAATTA
22718533 AATATA
63 AATATA
22718539 ATTATTTACT
Statistics
Matches: 304, Mismatches: 22, Indels: 40
0.83 0.06 0.11
Matches are distributed among these distances:
134 5 0.02
135 1 0.00
136 5 0.02
137 8 0.03
138 202 0.66
139 16 0.05
140 4 0.01
141 4 0.01
142 30 0.10
143 8 0.03
144 21 0.07
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (137 bp):
TATAATTAAATAATTAATACTGTTTATAATTAAATATTTAATTAAACATATGTTAATAATTAAAT
ATATAATTACTAATTAAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTAAAATT
TTCAAAT
Found at i:22718201 original size:44 final size:43
Alignment explanation
Indices: 22718109--22718483 Score: 277
Period size: 44 Copynumber: 8.2 Consensus size: 43
22718099 ATACTGTTTA
** *
22718109 TAATTAAATATATAATTAAACATAATTAAATAATTAAATATAATTATT
1 TAATT-AA-ATATAATT-AA-ATAATTAAATTTTTAAAT-TAAATATT
22718157 TAATTAAATATAATTAAATAATTAAATCTTTTAAATTAAATATT
1 TAATTAAATATAATTAAATAATTAAAT-TTTTAAATTAAATATT
* * ** * *
22718201 TAATTAACTAATACTGTTTATAATTAAATATAT-AATTAAACATAGTT
1 TAATTAAAT-ATAAT-TAAATAATTAAATTTTTAAATT-AA-ATA-TT
* ** * *
22718248 AAATAATTAAATATAGTTATTTACTTTAATATTTTAAATTAAATATT
1 ---TAATTAAATATAATTAAATAATTAAAT-TTTTAAATTAAATATT
* *
22718295 AAATTAAATATAATTAAATAATTAAAATTTTCAAATTAAATATT
1 TAATTAAATATAATTAAATAATT-AAATTTTTAAATTAAATATT
* * ** *
22718339 TAATTAATTAATACTGTTTATAATTAAATATTT-AATTAAACATAATT
1 TAATTAAAT-ATAAT-TAAATAATTAAATTTTTAAATT-AA-AT-ATT
**
22718386 AAATAATTAAATATAATTATTTAATTAAATATTTTAAATTAAATATT
1 ---TAATTAAATATAATTAAATAATTAAAT-TTTTAAATTAAATATT
*
22718433 TAATTAAATATAATTAAATAATTAAAATTTTCAAATTAAATATT
1 TAATTAAATATAATTAAATAATT-AAATTTTTAAATTAAATATT
*
22718477 AAATTAA
1 TAATTAA
22718484 CTAATACTGT
Statistics
Matches: 264, Mismatches: 40, Indels: 50
0.75 0.11 0.14
Matches are distributed among these distances:
44 115 0.44
45 35 0.13
46 31 0.12
47 12 0.05
48 30 0.11
49 17 0.06
50 24 0.09
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (43 bp):
TAATTAAATATAATTAAATAATTAAATTTTTAAATTAAATATT
Found at i:22718236 original size:94 final size:92
Alignment explanation
Indices: 22718139--22718542 Score: 346
Period size: 94 Copynumber: 4.4 Consensus size: 92
22718129 CATAATTAAA
*
22718139 TAATTAAATATAATTATTTAATTAAATATAATTAAATAATTAAATCTTTTAAATTAAATATTTAA
1 TAATTAAATATAATTATTTAATTAAATATAATTAAATAATTAAAT-TTTTAAATTAAATATTAAA
22718204 TTAACTAATACTGTTTATAATTAAATAT
65 TTAACTAATACTGTTTATAATTAAATAT
* * ** * ** * *
22718232 ATAATTAAACATAGTTAAATAATTAAATATAGTTATTTACTTTAATATTTTAAATTAAATATTAA
1 -TAATTAAATATAATTATTTAATTAAATATAATTAAATAATTAAAT-TTTTAAATTAAATATTAA
* * **
22718297 ATTAAAT-ATAAT-TAAATAATTAAA-AT
64 ATTAACTAATACTGTTTATAATTAAATAT
* * * ** *
22718323 T--TTCAAAT-TAAATATTTAATTAATTAATACTGTTTATAATTAAATATTT-AATTAAACATAA
1 TAATT-AAATATAATTATTTAATTAAAT-ATAAT-TAAATAATTAAATTTTTAAATT-AA-AT-A
* * *
22718384 TTAAA-TAATTAAATA-TAATTATTTAATTAAATAT
60 TTAAATTAACT-AATACT-GTT-TATAATTAAATAT
* *
22718418 T--TTAAAT-TAAATATTTAATTAAATATAATTAAATAATTAAAATTTTCAAATTAAATATTAAA
1 TAATTAAATATAATTATTTAATTAAATATAATTAAATAATT-AAATTTTTAAATTAAATATTAAA
22718480 TTAACTAATACTGTTTATAATTAAATATT
65 TTAACTAATACTGTTTATAATTAAATA-T
* **
22718509 TAATTAAACATAATTAAATAATTAAATATAATTA
1 TAATTAAATATAATTATTTAATTAAATATAATTA
22718543 TTTACTTTAA
Statistics
Matches: 246, Mismatches: 44, Indels: 40
0.75 0.13 0.12
Matches are distributed among these distances:
88 18 0.07
89 12 0.05
90 27 0.11
91 23 0.09
92 27 0.11
93 22 0.09
94 112 0.46
95 5 0.02
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (92 bp):
TAATTAAATATAATTATTTAATTAAATATAATTAAATAATTAAATTTTTAAATTAAATATTAAAT
TAACTAATACTGTTTATAATTAAATAT
Found at i:22718256 original size:62 final size:59
Alignment explanation
Indices: 22718190--22718324 Score: 150
Period size: 62 Copynumber: 2.2 Consensus size: 59
22718180 AAATCTTTTA
*
22718190 AATTAAATATTTAATTAAC-TAATACTGTTTATAATTAAATA-TATAATTAAACATAGTTAAAT
1 AATTAAATATTT-ATTAACTTAATA-T-TTTA-AATTAAATATTA-AATTAAACATAATTAAAT
* *
22718252 AATTAAATATAGTTATTTACTTTAATATTTTAAATTAAATATTAAATTAAATATAATTAAAT
1 AATTAAATAT--TTATTAAC-TTAATATTTTAAATTAAATATTAAATTAAACATAATTAAAT
22718314 AATTAAA-ATTT
1 AATTAAATATTT
22718325 TCAAATTAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
59 2 0.03
61 2 0.03
62 42 0.65
63 11 0.17
64 3 0.05
65 5 0.08
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.44
Consensus pattern (59 bp):
AATTAAATATTTATTAACTTAATATTTTAAATTAAATATTAAATTAAACATAATTAAAT
Found at i:22718304 original size:276 final size:274
Alignment explanation
Indices: 22718049--22718560 Score: 737
Period size: 276 Copynumber: 1.8 Consensus size: 274
22718039 ATTATTTACT
** * **
22718049 TTAATATAATTAAATAATTAA-ATCT-TTTA-AATTAAATATTTAATTAATTGATACTGTTTATA
1 TTAA-ATAATTAAATAATTAATA-CTGTTTATAATTAAATATTTAATTAA-ACATAAT-TAAATA
*
22718111 ATTAAATATATAATTAAACATAATTAAATA-ATTAAATATAATTATTTAATTAAATATAATTAAA
62 ATT-AA-ATATAATT--ACATAATTAAATATATTAAAT-TAAATATTTAATTAAATATAATTAAA
* *
22718175 TAATT-AAATCTTTTAAATTAAATATTTAATTAACTAATACTGTTTATAATTAAATATATAATTA
122 TAATTAAAAT-TTTCAAATTAAATATTAAATTAACTAATACTGTTTATAATTAAATATATAATTA
* *
22718239 AACATAGTTAAATAATTAAATATAGTTATTTACTTTAATATTTTAAATTAAATATTAAATTAAAT
186 AACATAATTAAATAATTAAATATAATTATTTACTTTAATATTTTAAATTAAATATTAAATTAAAT
22718304 ATAATTAAATAATTAAAATTTTCAAA
251 ATAATTAAATAATT--AATTTTCAAA
* *
22718330 TTAAATATTTAATTAATTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAATAATTA
1 TTAAATAATTAAATAATTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAATAATTA
** *
22718395 AATATAATTATTTAATTAAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTAAAA
66 AATATAATTACATAATTAAATATATTAAATTAAATATTTAATTAAATATAATTAAATAATTAAAA
*
22718460 TTTTCAAATTAAATATTAAATTAACTAATACTGTTTATAATTAAATATTTAATTAAACATAATTA
131 TTTTCAAATTAAATATTAAATTAACTAATACTGTTTATAATTAAATATATAATTAAACATAATTA
22718525 AATAATTAAATATAATTATTTACTTTAATATTTTAA
196 AATAATTAAATATAATTATTTACTTTAATATTTTAA
22718561 TTTTATTCAT
Statistics
Matches: 210, Mismatches: 16, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
276 136 0.65
277 10 0.05
278 8 0.04
279 2 0.01
280 23 0.11
281 13 0.06
282 18 0.09
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.45
Consensus pattern (274 bp):
TTAAATAATTAAATAATTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAATAATTA
AATATAATTACATAATTAAATATATTAAATTAAATATTTAATTAAATATAATTAAATAATTAAAA
TTTTCAAATTAAATATTAAATTAACTAATACTGTTTATAATTAAATATATAATTAAACATAATTA
AATAATTAAATATAATTATTTACTTTAATATTTTAAATTAAATATTAAATTAAATATAATTAAAT
AATTAATTTTCAAA
Found at i:22718397 original size:62 final size:63
Alignment explanation
Indices: 22718328--22718538 Score: 232
Period size: 62 Copynumber: 3.2 Consensus size: 63
22718318 AAAATTTTCA
22718328 AATTAAATAT-TTAATTAATTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAAT
1 AATTAAATATATTAATTAATTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAAT
* *
22718390 AATTAAATATAATTATTTAATTAAATA-T-TTTA-AATTAAATATTTAATTAAATATAATTAAAT
1 AATTAAATAT-ATTAATTAATT-AATACTGTTTATAATTAAATATTTAATTAAACATAATT--A-
22718452 AATT
61 AA-T
*
22718456 AAAATTTTCAAATTAAATATTAAATTAACTAATACTGTTTATAATTAAATATTTAATTAAACATA
1 --AA--TT-AAA-T--ATATT-AATTAATTAATACTGTTTATAATTAAATATTTAATTAAACATA
22718521 ATTAAAT
57 ATTAAAT
22718528 AATTAAATATA
1 AATTAAATATA
22718539 ATTATTTACT
Statistics
Matches: 125, Mismatches: 5, Indels: 36
0.75 0.03 0.22
Matches are distributed among these distances:
62 35 0.28
63 4 0.03
64 14 0.11
65 6 0.05
66 2 0.02
67 3 0.02
68 4 0.03
70 4 0.03
71 3 0.02
72 2 0.02
73 9 0.07
74 10 0.08
75 4 0.03
76 25 0.20
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (63 bp):
AATTAAATATATTAATTAATTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAAT
Found at i:22718514 original size:44 final size:46
Alignment explanation
Indices: 22718174--22718533 Score: 268
Period size: 46 Copynumber: 7.8 Consensus size: 46
22718164 ATATAATTAA
* * *
22718174 ATAATTAAATCTTTTAAATTAAATATTTAATTAACTAATACTGTTT
1 ATAATTAAATATTTTAAATTAAATATTAAATTAATTAATACTGTTT
*
22718220 ATAATTAAATA-TAT-AATTAAACATAGTTAAA-TAATTAAATA-TAGTTAT
1 ATAATTAAATATTTTAAATT-AA-ATA-TTAAATTAATT-AATACT-GTT-T
* * * * * **
22718268 TTACTTTAATATTTTAAATTAAATATTAAATTAAAT-ATAAT-TAA
1 ATAATTAAATATTTTAAATTAAATATTAAATTAATTAATACTGTTT
*
22718312 ATAATTAAA-ATTTTCAAATTAAATATTTAATTAATTAATACTGTTT
1 ATAATTAAATATTTT-AAATTAAATATTAAATTAATTAATACTGTTT
*
22718358 ATAATTAAATA-TTT-AATTAAACATAATTAAA-TAATTAAATA-TAATTAT
1 ATAATTAAATATTTTAAATT-AA-AT-ATTAAATTAATT-AATACT-GTT-T
* * * * **
22718406 TTAATTAAATATTTTAAATTAAATATTTAATTAAAT-ATAAT-TAA
1 ATAATTAAATATTTTAAATTAAATATTAAATTAATTAATACTGTTT
*
22718450 ATAATTAAA-ATTTTCAAATTAAATATTAAATTAACTAATACTGTTT
1 ATAATTAAATATTTT-AAATTAAATATTAAATTAATTAATACTGTTT
22718496 ATAATTAAATA-TTT-AATTAAACATAATTAAA-TAATTAA
1 ATAATTAAATATTTTAAATT-AA-AT-ATTAAATTAATTAA
22718534 ATATAATTAT
Statistics
Matches: 250, Mismatches: 33, Indels: 62
0.72 0.10 0.18
Matches are distributed among these distances:
43 10 0.04
44 64 0.26
45 18 0.07
46 66 0.26
47 42 0.17
48 33 0.13
49 9 0.04
50 8 0.03
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (46 bp):
ATAATTAAATATTTTAAATTAAATATTAAATTAATTAATACTGTTT
Found at i:22718539 original size:138 final size:138
Alignment explanation
Indices: 22718131--22718560 Score: 711
Period size: 138 Copynumber: 3.1 Consensus size: 138
22718121 TAATTAAACA
* * *
22718131 TAATTAAATA-ATTAAATATAATTATTTAATTAAATATAATTAAATAATT-AAATCTTTTAAATT
1 TAATTAAATATTTTAAAT-TAAATATTTAATTAAATATAATTAAATAATTAAAAT-TTTCAAATT
* *
22718194 AAATATTTAATTAACTAATACTGTTTATAATTAAATATATAATTAAACATAGTTAAATAATTAAA
64 AAATATTTAATTAACTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAATAATTAAA
*
22718259 TATAGTTATT
129 TATAATTATT
* * *
22718269 TACTTTAATATTTTAAATTAAATATTAAATTAAATATAATTAAATAATTAAAATTTTCAAATTAA
1 TAATTAAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTAAAATTTTCAAATTAA
*
22718334 ATATTTAATTAATTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAATAATTAAATA
66 ATATTTAATTAACTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAATAATTAAATA
22718399 TAATTATT
131 TAATTATT
22718407 TAATTAAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTAAAATTTTCAAATTAA
1 TAATTAAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTAAAATTTTCAAATTAA
*
22718472 ATATTAAATTAACTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAATAATTAAATA
66 ATATTTAATTAACTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAATAATTAAATA
22718537 TAATTATT
131 TAATTATT
* *
22718545 TACTTTAATATTTTAA
1 TAATTAAATATTTTAA
22718561 TTTTATTCAT
Statistics
Matches: 273, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
138 263 0.96
139 10 0.04
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (138 bp):
TAATTAAATATTTTAAATTAAATATTTAATTAAATATAATTAAATAATTAAAATTTTCAAATTAA
ATATTTAATTAACTAATACTGTTTATAATTAAATATTTAATTAAACATAATTAAATAATTAAATA
TAATTATT
Found at i:22722200 original size:81 final size:80
Alignment explanation
Indices: 22722091--22722367 Score: 308
Period size: 81 Copynumber: 3.4 Consensus size: 80
22722081 TTTAAATAAA
* ** * *** * *
22722091 TTAGCGGCACTTATGGGAAAACGCCGCTAATGCAC-ACCTTTAGCAGCGCTTTTTTTATAAGCGC
1 TTAGCGGCGCTTGGGGGAAAGCGCCGCTAATGCACGACCTTTAGC-GCGCTTGGGTGA-AAGCGT
22722155 CGCTAATGACCCGACCT
64 CGCTAATGACCCGACCT
* * *
22722172 TTAGCAGCGCTTGGGGGAAAGCACCGCTAATGACCCGACCTTTAGCGACGCTTGGGTGAAAGCGT
1 TTAGCGGCGCTTGGGGGAAAGCGCCGCTAATG-CACGACCTTTAGCG-CGCTTGGGTGAAAGCGT
22722237 CGCTAATGACCCGA-CT
64 CGCTAATGACCCGACCT
* * * *
22722253 TTAGCGGTGCTTGGGAGAAAGCGCCGCTAATG-ACCTGACCTTTAGTGGCGCTTGGGGGAAAGCG
1 TTAGCGGCGCTTGGGGGAAAGCGCCGCTAATGCA-C-GACCTTTAG-CGCGCTTGGGTGAAAGCG
22722317 TCGCTAATGACCCGACCT
63 TCGCTAATGACCCGACCT
**
22722335 TTAGCGGCGCTTGGTTGAAAGCGCCGCTAATGC
1 TTAGCGGCGCTTGGGGGAAAGCGCCGCTAATGC
22722368 TTTACCTTTT
Statistics
Matches: 166, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
80 1 0.01
81 95 0.57
82 54 0.33
83 16 0.10
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (80 bp):
TTAGCGGCGCTTGGGGGAAAGCGCCGCTAATGCACGACCTTTAGCGCGCTTGGGTGAAAGCGTCG
CTAATGACCCGACCT
Found at i:22722210 original size:41 final size:41
Alignment explanation
Indices: 22722149--22722366 Score: 321
Period size: 41 Copynumber: 5.3 Consensus size: 41
22722139 CTTTTTTTAT
*
22722149 AAGCGCCGCTAATGACCCGACCTTTAGCAGCGCTTGGGGGA
1 AAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTGGGGGA
* * *
22722190 AAGCACCGCTAATGACCCGACCTTTAGCGACGCTTGGGTGA
1 AAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTGGGGGA
* * *
22722231 AAGCGTCGCTAATGACCCGA-CTTTAGCGGTGCTTGGGAGA
1 AAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTGGGGGA
* *
22722271 AAGCGCCGCTAATGACCTGACCTTTAGTGGCGCTTGGGGGA
1 AAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTGGGGGA
* **
22722312 AAGCGTCGCTAATGACCCGACCTTTAGCGGCGCTTGGTTGA
1 AAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTGGGGGA
22722353 AAGCGCCGCTAATG
1 AAGCGCCGCTAATG
22722367 CTTTACCTTT
Statistics
Matches: 156, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 35 0.22
41 121 0.78
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.21
Consensus pattern (41 bp):
AAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTGGGGGA
Found at i:22722375 original size:81 final size:82
Alignment explanation
Indices: 22722149--22722386 Score: 336
Period size: 81 Copynumber: 2.9 Consensus size: 82
22722139 CTTTTTTTAT
* * * * *
22722149 AAGCGCCGCTAATGACCCGACCTTTAGCAGCGCTTGGGGGAAAGCACCGCTAATGACCCGACCTT
1 AAGCGTCGCTAATGACCCGACCTTTAGCGGCGCTTGGGAGAAAGCGCCGCTAATGACCTGACCTT
* *
22722214 TAGCGACGCTTGGGTGA
66 TAGCGGCGCTTGGGGGA
*
22722231 AAGCGTCGCTAATGACCCGA-CTTTAGCGGTGCTTGGGAGAAAGCGCCGCTAATGACCTGACCTT
1 AAGCGTCGCTAATGACCCGACCTTTAGCGGCGCTTGGGAGAAAGCGCCGCTAATGACCTGACCTT
*
22722295 TAGTGGCGCTTGGGGGA
66 TAGCGGCGCTTGGGGGA
** * *
22722312 AAGCGTCGCTAATGACCCGACCTTTAGCGGCGCTTGGTTGAAAGCGCCGCTAATG-CTTTACCTT
1 AAGCGTCGCTAATGACCCGACCTTTAGCGGCGCTTGGGAGAAAGCGCCGCTAATGACCTGACCTT
*
22722376 TTGCGGCGCTT
66 TAGCGGCGCTT
22722387 TATTTCCAAA
Statistics
Matches: 139, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
81 89 0.64
82 50 0.36
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (82 bp):
AAGCGTCGCTAATGACCCGACCTTTAGCGGCGCTTGGGAGAAAGCGCCGCTAATGACCTGACCTT
TAGCGGCGCTTGGGGGA
Found at i:22722980 original size:22 final size:21
Alignment explanation
Indices: 22722946--22723045 Score: 80
Period size: 21 Copynumber: 4.7 Consensus size: 21
22722936 GGTTTTTTTG
*
22722946 TTTT-AATTA-GGTTTAGGTT
1 TTTTAAATTAGGGTTTAGGTA
*
22722965 TTTTAGAATTAGGGTTTATGT-
1 TTTTA-AATTAGGGTTTAGGTA
* * *
22722986 TATTAAAATTAGGGTTTTGATA
1 T-TTTAAATTAGGGTTTAGGTA
* *
22723008 TTTTAAATAAGGGTGTAGGGTA
1 TTTTAAATTAGGGTTTA-GGTA
22723030 TTTTAAATTAAGGGTT
1 TTTTAAATT-AGGGTT
22723046 ATGGAAAATT
Statistics
Matches: 62, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
19 4 0.06
21 30 0.48
22 23 0.37
23 5 0.08
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (21 bp):
TTTTAAATTAGGGTTTAGGTA
Found at i:22723081 original size:27 final size:25
Alignment explanation
Indices: 22723050--22723124 Score: 69
Period size: 29 Copynumber: 2.8 Consensus size: 25
22723040 AGGGTTATGG
*
22723050 AAAATTGTATGATTTAAAAAAATTAAT
1 AAAATTGTAT--TTTAAAAAAATTAAA
* *
22723077 GAAATTATAATTTTTGAAAATAAATTAAA
1 AAAATTGT-A-TTTT-AAAA-AAATTAAA
22723106 AAAATTGTATTTTAAAAAA
1 AAAATTGTATTTTAAAAAA
22723125 TGAAATTGTT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
25 2 0.05
26 4 0.10
27 13 0.33
28 6 0.15
29 14 0.36
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (25 bp):
AAAATTGTATTTTAAAAAAATTAAA
Found at i:22724516 original size:7 final size:7
Alignment explanation
Indices: 22724504--22724532 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
22724494 AAGATCCACA
22724504 ATTCACG
1 ATTCACG
22724511 ATTCACG
1 ATTCACG
22724518 ATTCACG
1 ATTCACG
22724525 ATTCACG
1 ATTCACG
22724532 A
1 A
22724533 CGTACTCGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (7 bp):
ATTCACG
Found at i:22735656 original size:39 final size:39
Alignment explanation
Indices: 22735610--22735706 Score: 167
Period size: 39 Copynumber: 2.5 Consensus size: 39
22735600 TTAAATAGGG
22735610 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
*
22735649 TTTTAATGTGTCTTATTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
* *
22735688 TTTTAAGGTGTCTAAGTTT
1 TTTTAATGTGTCTTAGTTT
22735707 TAGACAAATT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.25, C:0.05, G:0.15, T:0.55
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
Found at i:22735790 original size:32 final size:32
Alignment explanation
Indices: 22735754--22735816 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
22735744 AGCTGAAATT
* *
22735754 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATATATTTCAGGTACATGC
22735786 AATTAGCTGATTAATATATTTCAGGTACATG
1 AATTAGCTGATTAATATATTTCAGGTACATG
22735817 TATGGATGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAGGTACATGC
Found at i:22737944 original size:23 final size:23
Alignment explanation
Indices: 22737901--22737946 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
22737891 TTTTGAGAGT
*
22737901 TTTAAAGAGAAAATTCTGTGAAA
1 TTTAAAGAGAAAATTCAGTGAAA
* *
22737924 TTTAGAGAGAAAATTGAGTGAAA
1 TTTAAAGAGAAAATTCAGTGAAA
22737947 AATAAAGGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.48, C:0.02, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAAAGAGAAAATTCAGTGAAA
Found at i:22738146 original size:31 final size:30
Alignment explanation
Indices: 22738064--22738146 Score: 78
Period size: 31 Copynumber: 2.6 Consensus size: 30
22738054 ATAAAGCGCG
* * *
22738064 TCCACGTGTGCGCTCTTTTGGGTAAAAACGCT
1 TCCATGTGGGCGC-CTTTT-GGCAAAAACGCT
*
22738096 TCCATGTGGGCGCCATTTTGGCAAAAACTC-
1 TCCATGTGGGCGCC-TTTTGGCAAAAACGCT
22738126 TCCTATGTGGGCGCGCTTTTG
1 TCC-ATGTGGGCGC-CTTTTG
22738147 TTGCACCCCA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
30 3 0.07
31 25 0.57
32 16 0.36
ACGTcount: A:0.17, C:0.25, G:0.27, T:0.31
Consensus pattern (30 bp):
TCCATGTGGGCGCCTTTTGGCAAAAACGCT
Found at i:22741248 original size:15 final size:14
Alignment explanation
Indices: 22741229--22741316 Score: 54
Period size: 15 Copynumber: 6.0 Consensus size: 14
22741219 TAATTCATAT
22741229 TTTAATAATAATTA
1 TTTAATAATAATTA
*
22741243 TATTAAAAAT-ATTA
1 T-TTAATAATAATTA
* *
22741257 TTAAATTATATATTA
1 TTTAATAATA-ATTA
* *
22741272 TTTCATTAA-ATTATA
1 TTT-AATAATAAT-TA
22741287 TTTAATAATAATTA
1 TTTAATAATAATTA
*
22741301 TGTTAAAATATAATTA
1 T-TTAATA-ATAATTA
22741317 ACTTATTTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
13 5 0.09
14 14 0.25
15 26 0.47
16 10 0.18
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (14 bp):
TTTAATAATAATTA
Found at i:22741297 original size:58 final size:60
Alignment explanation
Indices: 22741211--22741341 Score: 171
Period size: 58 Copynumber: 2.2 Consensus size: 60
22741201 CTCCATTGTG
* *
22741211 ATTTTTATT-AATTCATATTTTAATAATAATTATATTAAAAATATTATTAAATTATATATT
1 ATTTTCATTAAATTCATATTTTAATAATAATTATATT-AAAATATAATTAAATTATATATT
* * *
22741271 A-TTTCATTAAATT-ATA-TTTAATAATAATTATGTTAAAATATAATTAACTTATTTATT
1 ATTTTCATTAAATTCATATTTTAATAATAATTATATTAAAATATAATTAAATTATATATT
*
22741328 ATTTTTATTAAATT
1 ATTTTCATTAAATT
22741342 TAATTGTCTT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
57 21 0.33
58 28 0.44
59 9 0.14
60 5 0.08
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (60 bp):
ATTTTCATTAAATTCATATTTTAATAATAATTATATTAAAATATAATTAAATTATATATT
Found at i:22745258 original size:66 final size:66
Alignment explanation
Indices: 22745177--22745308 Score: 219
Period size: 66 Copynumber: 2.0 Consensus size: 66
22745167 ACAATTATAC
*
22745177 GTAAACAACTCTAAATTAGAATACAAACTTCTAAAGTTCACACACACCTTTGAAAACATGCAAGA
1 GTAAACAACTCTAAATTAGAATACAAACTTCTAAAGTTCACACACACCTTCGAAAACATGCAAGA
22745242 T
66 T
* * * *
22745243 GTAAACAACTCTAAATTGGAATACGAACTTCTAAAGTTCACACACACCTTCGAAGAGATGCAAGA
1 GTAAACAACTCTAAATTAGAATACAAACTTCTAAAGTTCACACACACCTTCGAAAACATGCAAGA
22745308 T
66 T
22745309 AGTCCTCTCT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.23
Consensus pattern (66 bp):
GTAAACAACTCTAAATTAGAATACAAACTTCTAAAGTTCACACACACCTTCGAAAACATGCAAGA
T
Found at i:22754705 original size:25 final size:24
Alignment explanation
Indices: 22754664--22754723 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 24
22754654 GTATAGCTAG
* *
22754664 AAAGAGAAAAACAATGA-AAAATCAA
1 AAAGA-AAAAAAAATGAGAAAAAC-A
22754689 AAAGAAAAAAAAGATGAGTAAAAACA
1 AAAGAAAAAAAA-ATGAG-AAAAACA
22754715 AAAGAAAAA
1 AAAGAAAAA
22754724 TTCATGAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 6 0.20
25 9 0.30
26 10 0.33
27 5 0.17
ACGTcount: A:0.75, C:0.05, G:0.13, T:0.07
Consensus pattern (24 bp):
AAAGAAAAAAAAATGAGAAAAACA
Found at i:22760648 original size:24 final size:24
Alignment explanation
Indices: 22760613--22760683 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
22760603 ATGTTTGACT
* *
22760613 TATTCATCCTGGTGAGCATAAACG
1 TATTCATGCTGGCGAGCATAAACG
*
22760637 TATTCATGCTGGCGAGCGTAAACG
1 TATTCATGCTGGCGAGCATAAACG
* *
22760661 TATTCATGCTGACGAGCGTAAAC
1 TATTCATGCTGGCGAGCATAAAC
22760684 ATAATGAACT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (24 bp):
TATTCATGCTGGCGAGCATAAACG
Found at i:22762784 original size:39 final size:38
Alignment explanation
Indices: 22762741--22763167 Score: 282
Period size: 39 Copynumber: 11.3 Consensus size: 38
22762731 AAAAAACCTT
*
22762741 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGTAAGC
1 ATTCAGTATAATCAGTGGAT-ATGCTCGTTTGAGCAAGC
*
22762780 ATTCACTATAATCAGTGGATTATGCTCGTTTGAGCAAGC
1 ATTCAGTATAATCAGTGGA-TATGCTCGTTTGAGCAAGC
* * *
22762819 ATTTAGTATAATCAGTGGGTAATGCTCGTTTGAGCAAAC
1 ATTCAGTATAATCAGTGGAT-ATGCTCGTTTGAGCAAGC
* * * * *
22762858 ATTTAGTATAATTAGTTGAT-TCGCTCGTTTAAACAAGC
1 ATTCAGTATAATCAGTGGATAT-GCTCGTTTGAGCAAGC
* * *** * *
22762896 ATCCAGTATAATCGGTATTTATCGCTCATTTGAGCAAAC
1 ATTCAGTATAATCAGTGGATAT-GCTCGTTTGAGCAAGC
* * *
22762935 ATTCAGTATAACCAGTGGAT-TCGCTCATTTGAACAAGC
1 ATTCAGTATAATCAGTGGATAT-GCTCGTTTGAGCAAGC
* * * * *
22762973 ATTC------ATCAGTAGTTATCACTCGTTTGAGTAAAC
1 ATTCAGTATAATCAGTGGATAT-GCTCGTTTGAGCAAGC
* * * **
22763006 ATT-TGTATAATCAGTGGCTTTGCTCGTTTGAAAAAGC
1 ATTCAGTATAATCAGTGGATATGCTCGTTTGAGCAAGC
* * * * * * *
22763043 ATTCAATATAATTAGTAGTTACCGTTCGTTTGAGCAAAC
1 ATTCAGTATAATCAGTGGATA-TGCTCGTTTGAGCAAGC
* * *
22763082 ATTCAATATAATCAGTGGAT-TCACTCGTTTGAACAAGC
1 ATTCAGTATAATCAGTGGATAT-GCTCGTTTGAGCAAGC
* * *
22763120 ATTCAGCATAGTCAGTGGAT-TCGCTCGCTTGAGCAAGC
1 ATTCAGTATAATCAGTGGATAT-GCTCGTTTGAGCAAGC
* *
22763158 AGTCAATATA
1 ATTCAGTATA
22763168 GTAAGTACTC
Statistics
Matches: 300, Mismatches: 74, Indels: 29
0.74 0.18 0.07
Matches are distributed among these distances:
32 7 0.02
33 16 0.05
37 16 0.05
38 118 0.39
39 142 0.47
40 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (38 bp):
ATTCAGTATAATCAGTGGATATGCTCGTTTGAGCAAGC
Found at i:22763075 original size:147 final size:148
Alignment explanation
Indices: 22762843--22763124 Score: 388
Period size: 147 Copynumber: 1.9 Consensus size: 148
22762833 GTGGGTAATG
* * *
22762843 CTCGTTTGAGCAAACATTTAGTATAATTAGTTGATTCGCTCGTTTAAACAAGCATCCAGTATAAT
1 CTCGTTTGAGCAAACATTTAGTATAATCAGTGGATTCGCTCGTTTAAACAAGCATCCAATATAAT
* * * * *
22762908 CGGTATTTATCGCTCATTTGAGCAAACATTCAGTATAACCAGTGGATTCGCTCATTTGAACAAGC
66 CAGTAGTTACCGCTCATTTGAGCAAACATTCAATATAACCAGTGGATTCACTCATTTGAACAAGC
22762973 ATTCATCAGTAGTTATCA
131 ATTCATCAGTAGTTATCA
* * * *
22762991 CTCGTTTGAGTAAACATTT-GTATAATCAGTGGCTTTGCTCGTTTGAAA-AAGCATTCAATATAA
1 CTCGTTTGAGCAAACATTTAGTATAATCAGTGGATTCGCTCGTTT-AAACAAGCATCCAATATAA
* * * * *
22763054 TTAGTAGTTACCGTTCGTTTGAGCAAACATTCAATATAATCAGTGGATTCACTCGTTTGAACAAG
65 TCAGTAGTTACCGCTCATTTGAGCAAACATTCAATATAACCAGTGGATTCACTCATTTGAACAAG
22763119 CATTCA
130 CATTCA
22763125 GCATAGTCAG
Statistics
Matches: 116, Mismatches: 17, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
147 95 0.82
148 21 0.18
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (148 bp):
CTCGTTTGAGCAAACATTTAGTATAATCAGTGGATTCGCTCGTTTAAACAAGCATCCAATATAAT
CAGTAGTTACCGCTCATTTGAGCAAACATTCAATATAACCAGTGGATTCACTCATTTGAACAAGC
ATTCATCAGTAGTTATCA
Found at i:22763122 original size:77 final size:77
Alignment explanation
Indices: 22762741--22763155 Score: 400
Period size: 77 Copynumber: 5.5 Consensus size: 77
22762731 AAAAAACCTT
* * * * * *
22762741 ATTCAGTATAATCAGTGGATAAT-GCTCGTTTGAGTAAGCATTCACTATAATCAGTGGATTATGC
1 ATTCAGTATAATCAGTAG-TTATCGCTCGTTTGAGCAAACATTCAGTATAATCAGTGGATT-CGC
*
22762805 TCGTTTGAGCAAGC
64 TCGTTTGAACAAGC
* * * * * *
22762819 ATTTAGTATAATCAGTGGGTAAT-GCTCGTTTGAGCAAACATTTAGTATAATTAGTTGATTCGCT
1 ATTCAGTATAATCAGT-AGTTATCGCTCGTTTGAGCAAACATTCAGTATAATCAGTGGATTCGCT
*
22762883 CGTTTAAACAAGC
65 CGTTTGAACAAGC
* * * * *
22762896 ATCCAGTATAATCGGTATTTATCGCTCATTTGAGCAAACATTCAGTATAACCAGTGGATTCGCTC
1 ATTCAGTATAATCAGTAGTTATCGCTCGTTTGAGCAAACATTCAGTATAATCAGTGGATTCGCTC
*
22762961 ATTTGAACAAGC
66 GTTTGAACAAGC
* * * * *
22762973 ATTC------ATCAGTAGTTATCACTCGTTTGAGTAAACATT-TGTATAATCAGTGGCTTTGCTC
1 ATTCAGTATAATCAGTAGTTATCGCTCGTTTGAGCAAACATTCAGTATAATCAGTGGATTCGCTC
*
22763031 GTTTGAAAAAGC
66 GTTTGAACAAGC
* * * * * *
22763043 ATTCAATATAATTAGTAGTTACCGTTCGTTTGAGCAAACATTCAATATAATCAGTGGATTCACTC
1 ATTCAGTATAATCAGTAGTTATCGCTCGTTTGAGCAAACATTCAGTATAATCAGTGGATTCGCTC
22763108 GTTTGAACAAGC
66 GTTTGAACAAGC
* * * * *
22763120 ATTCAGCATAGTCAGTGGAT-TCGCTCGCTTGAGCAA
1 ATTCAGTATAATCAGTAGTTATCGCTCGTTTGAGCAA
22763156 GCAGTCAATA
Statistics
Matches: 273, Mismatches: 55, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
70 32 0.12
71 27 0.10
76 43 0.16
77 119 0.44
78 50 0.18
79 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (77 bp):
ATTCAGTATAATCAGTAGTTATCGCTCGTTTGAGCAAACATTCAGTATAATCAGTGGATTCGCTC
GTTTGAACAAGC
Found at i:22763169 original size:38 final size:38
Alignment explanation
Indices: 22763072--22763169 Score: 124
Period size: 38 Copynumber: 2.6 Consensus size: 38
22763062 TACCGTTCGT
* * *
22763072 TTGAGCAAACATTCAATATAATCAGTGGATTCACTCGT
1 TTGAGCAAGCATTCAATATAGTCAGTGGATTCACTCGC
* ** *
22763110 TTGAACAAGCATTCAGCATAGTCAGTGGATTCGCTCGC
1 TTGAGCAAGCATTCAATATAGTCAGTGGATTCACTCGC
*
22763148 TTGAGCAAGCAGTCAATATAGT
1 TTGAGCAAGCATTCAATATAGT
22763170 AAGTACTCCA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (38 bp):
TTGAGCAAGCATTCAATATAGTCAGTGGATTCACTCGC
Found at i:22768118 original size:15 final size:17
Alignment explanation
Indices: 22768098--22768129 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
22768088 AAGCACCCAT
22768098 CAAAAAC-AAAA-TAAA
1 CAAAAACTAAAACTAAA
22768113 CAAAAACTAAAACTAAA
1 CAAAAACTAAAACTAAA
22768130 TGCAATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.75, C:0.16, G:0.00, T:0.09
Consensus pattern (17 bp):
CAAAAACTAAAACTAAA
Found at i:22778963 original size:17 final size:17
Alignment explanation
Indices: 22778933--22778965 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22778923 TAAAATTCTA
22778933 TTAAAATAAGTATTAAC
1 TTAAAATAAGTATTAAC
22778950 TTAAATATAA-TATTAA
1 TTAAA-ATAAGTATTAA
22778966 ACTATTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (17 bp):
TTAAAATAAGTATTAAC
Found at i:22787897 original size:27 final size:27
Alignment explanation
Indices: 22787860--22787926 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
22787850 CATGGATAAT
*
22787860 CACAGATGCTTCCATTAAAGAGATTGC
1 CACAGAGGCTTCCATTAAAGAGATTGC
* * * *
22787887 CATAGAGGCTTCTATTATAGAGATTGG
1 CACAGAGGCTTCCATTAAAGAGATTGC
22787914 CACAGAGGCTTCC
1 CACAGAGGCTTCC
22787927 TTTACATGGT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (27 bp):
CACAGAGGCTTCCATTAAAGAGATTGC
Found at i:22787949 original size:27 final size:27
Alignment explanation
Indices: 22787919--22787980 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
22787909 ATTGGCACAG
* **
22787919 AGGCTTCCTTTACATGGTTTTCCACTA
1 AGGCTTCCTTTACATGATTAGCCACTA
*
22787946 AGGCTTCCTTTACATGATTAGCTACTA
1 AGGCTTCCTTTACATGATTAGCCACTA
22787973 AGGCTTCC
1 AGGCTTCC
22787981 ATTTCAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (27 bp):
AGGCTTCCTTTACATGATTAGCCACTA
Found at i:22788023 original size:28 final size:26
Alignment explanation
Indices: 22787991--22788085 Score: 100
Period size: 28 Copynumber: 3.4 Consensus size: 26
22787981 ATTTCAAATA
*
22787991 TGCCACAAGGGCTTTCATGTTCAGGGGT
1 TGCCACAAAGGCTTTC-T-TTCAGGGGT
*
22788019 TGCCACAAAGGCTTTCCTTTCAGAGGT
1 TGCCACAAAGGCTTT-CTTTCAGGGGT
* *
22788046 TCTCCACAAAGGCTTTCTTTTCAGAGGTT
1 T-GCCACAAAGGCTTTC-TTTCAG-GGGT
22788075 TGCCACAAAGG
1 TGCCACAAAGG
22788086 TTTTACTTCA
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
27 10 0.18
28 43 0.75
29 4 0.07
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.29
Consensus pattern (26 bp):
TGCCACAAAGGCTTTCTTTCAGGGGT
Found at i:22791085 original size:21 final size:21
Alignment explanation
Indices: 22791061--22791106 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
22791051 ATTTAATTCG
*
22791061 GATTTATAAACTTTATGTTTC
1 GATTTATAAACTTTATATTTC
* *
22791082 GATTTCTAAACTTTATATTTG
1 GATTTATAAACTTTATATTTC
22791103 GATT
1 GATT
22791107 ATGCTTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.11, T:0.52
Consensus pattern (21 bp):
GATTTATAAACTTTATATTTC
Found at i:22791575 original size:27 final size:27
Alignment explanation
Indices: 22791536--22791609 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
22791526 ACACCCCAGG
*
22791536 AAAGATTAACCTTTGTTGTGAACTCTA
1 AAAGATTAGCCTTTGTTGTGAACTCTA
* *
22791563 AAAGATTAGCCTTTGTGGTGAACTCTG
1 AAAGATTAGCCTTTGTTGTGAACTCTA
*
22791590 AAAGAATAGCCTTT-TTGTGA
1 AAAGATTAGCCTTTGTTGTGA
22791610 TGAATTATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 5 0.12
27 37 0.88
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (27 bp):
AAAGATTAGCCTTTGTTGTGAACTCTA
Found at i:22791620 original size:29 final size:29
Alignment explanation
Indices: 22791574--22791660 Score: 88
Period size: 28 Copynumber: 3.0 Consensus size: 29
22791564 AAGATTAGCC
* *
22791574 TTTGTGGTGAACTCTGAAAGAATAGCCTT
1 TTTGTGGTGAATTATGAAAGAATAGCCTT
* *
22791603 TTTGTGATGAATTATGAAAGGAATAACC--
1 TTTGTGGTGAATTATGAAA-GAATAGCCTT
* *
22791631 TCTGTGGTGAATTATGAAGGAATAGACCTT
1 TTTGTGGTGAATTATGAAAGAATAG-CCTT
22791661 GTGGCGAACC
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
27 5 0.11
28 18 0.39
29 16 0.35
30 7 0.15
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (29 bp):
TTTGTGGTGAATTATGAAAGAATAGCCTT
Found at i:22793520 original size:27 final size:27
Alignment explanation
Indices: 22793488--22793541 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
22793478 GTATGATTTA
22793488 TCTCTTTTTCTATTTCAATGAATCCAT
1 TCTCTTTTTCTATTTCAATGAATCCAT
22793515 TCTCTTTTTCTATTTCAATGAATCCAT
1 TCTCTTTTTCTATTTCAATGAATCCAT
22793542 CACATCTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.22, G:0.04, T:0.52
Consensus pattern (27 bp):
TCTCTTTTTCTATTTCAATGAATCCAT
Found at i:22794997 original size:36 final size:36
Alignment explanation
Indices: 22794950--22795018 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
22794940 TTGAGACTTT
* *
22794950 GGCCTCATCTTCATGTGCACGTTGGGGTTGATCTTC
1 GGCCTCATCTTCATGTGCACATTGGAGTTGATCTTC
*
22794986 GGCCTCGTCTTCATGTGCACATTGGAGTTGATC
1 GGCCTCATCTTCATGTGCACATTGGAGTTGATC
22795019 ACTAACCTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.13, C:0.25, G:0.28, T:0.35
Consensus pattern (36 bp):
GGCCTCATCTTCATGTGCACATTGGAGTTGATCTTC
Found at i:22795363 original size:63 final size:63
Alignment explanation
Indices: 22795258--22795376 Score: 168
Period size: 63 Copynumber: 1.9 Consensus size: 63
22795248 TTGGAGAAGG
* *
22795258 TGTTGGTGCAGGGAATGATTGAGCGTACAGTGGTGATTGTGTAAAATGAACTGGTGATTACTA
1 TGTTGGTGCAGGGAATGATTGAGCGTACAGTGGTGATGGTGTAAAATAAACTGGTGATTACTA
* * * *
22795321 TGTTGGTGCATGGAATGATTGCGCGTGCTA-TGGTGCTGGTGTAAAATAAACTGGTG
1 TGTTGGTGCAGGGAATGATTGAGCGTAC-AGTGGTGATGGTGTAAAATAAACTGGTG
22795377 CGCATTATGA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
63 48 0.98
64 1 0.02
ACGTcount: A:0.24, C:0.09, G:0.34, T:0.32
Consensus pattern (63 bp):
TGTTGGTGCAGGGAATGATTGAGCGTACAGTGGTGATGGTGTAAAATAAACTGGTGATTACTA
Found at i:22798747 original size:9 final size:9
Alignment explanation
Indices: 22798733--22798763 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
22798723 TCACTAATTT
22798733 AAAATTTTA
1 AAAATTTTA
22798742 AAAATTTTA
1 AAAATTTTA
22798751 AAAATTTTA
1 AAAATTTTA
22798760 AAAA
1 AAAA
22798764 ACTTAATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AAAATTTTA
Found at i:22798769 original size:18 final size:18
Alignment explanation
Indices: 22798733--22798769 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
22798723 TCACTAATTT
**
22798733 AAAATTTTAAAAATTTTA
1 AAAATTTTAAAAAACTTA
22798751 AAAATTTTAAAAAACTTA
1 AAAATTTTAAAAAACTTA
22798769 A
1 A
22798770 TTTTTTTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATTTTAAAAAACTTA
Found at i:22811503 original size:19 final size:19
Alignment explanation
Indices: 22811461--22811504 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
22811451 TATACATATT
*
22811461 AAAAATATAGAAAATTTAG
1 AAAAATATAGAAAATCTAG
* *
22811480 AAAAATATATATAATCTAGG
1 AAAAATATAGAAAATCTA-G
22811500 AAAAA
1 AAAAA
22811505 ACATATAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (19 bp):
AAAAATATAGAAAATCTAG
Found at i:22811657 original size:15 final size:15
Alignment explanation
Indices: 22811634--22811664 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
22811624 GAAATTTATT
22811634 TATAAAATTCTAAAA
1 TATAAAATTCTAAAA
*
22811649 TATATAATTCTAAAA
1 TATAAAATTCTAAAA
22811664 T
1 T
22811665 TCTAAAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (15 bp):
TATAAAATTCTAAAA
Found at i:22811731 original size:18 final size:18
Alignment explanation
Indices: 22811710--22811775 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
22811700 TTACTTAAAA
22811710 TTTAAATATTTTTTAATT
1 TTTAAATATTTTTTAATT
22811728 TTTATAATA-TTTTTAATT
1 TTTA-AATATTTTTTAATT
* *
22811746 TTTATATATTATTTTGACTT
1 TTTAAATATT-TTTT-AATT
22811766 TTTAAA-ATTT
1 TTTAAATATTT
22811776 ATAATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
17 3 0.07
18 19 0.46
19 11 0.27
20 8 0.20
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTAAATATTTTTTAATT
Found at i:22811781 original size:36 final size:36
Alignment explanation
Indices: 22811710--22811781 Score: 85
Period size: 36 Copynumber: 2.0 Consensus size: 36
22811700 TTACTTAAAA
*
22811710 TTTAAATATTTTTTAATTTTTATAATATTTTTAATT
1 TTTAAATATTTTTTAATTTTTATAATATTTATAATT
* *
22811746 TTTATATATTATTTTGACTTTTTA-AA-ATTTATAATT
1 TTTAAATATT-TTTT-AATTTTTATAATATTTATAATT
22811782 GTATATTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 18 0.58
37 6 0.19
38 7 0.23
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (36 bp):
TTTAAATATTTTTTAATTTTTATAATATTTATAATT
Found at i:22811970 original size:8 final size:7
Alignment explanation
Indices: 22811954--22812013 Score: 52
Period size: 7 Copynumber: 8.4 Consensus size: 7
22811944 CAAAGTGTTT
22811954 TTTAATA
1 TTTAATA
22811961 TTTAAATA
1 TTT-AATA
22811969 TTTAATA
1 TTTAATA
22811976 TTATAAT-
1 TT-TAATA
* *
22811983 TTTCCATT
1 TTT-AATA
*
22811991 TTTAAAA
1 TTTAATA
22811998 TTTAA-A
1 TTTAATA
22812004 TTTAATA
1 TTTAATA
22812011 TTT
1 TTT
22812014 TTATTTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
6 7 0.16
7 23 0.52
8 14 0.32
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTAATA
Found at i:22817005 original size:33 final size:31
Alignment explanation
Indices: 22816918--22817042 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 31
22816908 GTAGGCGTGA
* ** *
22816918 CTTTATTATATAAATAATATATATGTGTAGG
1 CTTTATTATATATATAATATATATGCATGGG
22816949 CTTTATT-T-TATATAATATATATGCATGGG
1 CTTTATTATATATATAATATATATGCATGGG
22816978 CTTTATTATATATAGTATATATATATGCATGGG
1 CTTTATTATATATA-TA-ATATATATGCATGGG
* * * *
22817011 TTTTGGTGT-TATGTATAATATATATGAATGGG
1 CTTT-AT-TATATATATAATATATATGCATGGG
22817043 TTGATAAATA
Statistics
Matches: 80, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
29 24 0.30
30 2 0.03
31 11 0.14
32 16 0.20
33 20 0.25
34 6 0.08
35 1 0.01
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (31 bp):
CTTTATTATATATATAATATATATGCATGGG
Found at i:22817042 original size:32 final size:34
Alignment explanation
Indices: 22816959--22817044 Score: 106
Period size: 33 Copynumber: 2.6 Consensus size: 34
22816949 CTTTATTTTA
* *
22816959 TATAATATATATGCATGGGCTTTATTATATATAG
1 TATAATATATATGCATGGGTTTTAGTATATATAG
* *
22816993 TAT-ATATATATGCATGGGTTTTGGTGT-TAT-G
1 TATAATATATATGCATGGGTTTTAGTATATATAG
*
22817024 TATAATATATATGAATGGGTT
1 TATAATATATATGCATGGGTT
22817045 GATAAATATA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
31 4 0.09
32 19 0.41
33 20 0.43
34 3 0.07
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.45
Consensus pattern (34 bp):
TATAATATATATGCATGGGTTTTAGTATATATAG
Found at i:22817955 original size:20 final size:20
Alignment explanation
Indices: 22817930--22817969 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22817920 ACTATTTTTT
22817930 CTTCTCCTATTCT-CTTCTCA
1 CTTCTCC-ATTCTCCTTCTCA
*
22817950 CTTCTCCCTTCTCCTTCTCA
1 CTTCTCCATTCTCCTTCTCA
22817970 TTGTGTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.07, C:0.45, G:0.00, T:0.47
Consensus pattern (20 bp):
CTTCTCCATTCTCCTTCTCA
Found at i:22823691 original size:22 final size:22
Alignment explanation
Indices: 22823657--22823777 Score: 82
Period size: 22 Copynumber: 5.2 Consensus size: 22
22823647 ATGTTTGGCC
**
22823657 CCTTTGTAATGTATTTTGATAG
1 CCTTTGTGGTGTATTTTGATAG
**
22823679 CCTTTGTGGTGTATTCCGCAT-G
1 CCTTTGTGGTGTATTTTG-ATAG
**
22823701 TTACCTTTGTGGCATATTTTGATAG
1 ---CCTTTGTGGTGTATTTTGATAG
* * *
22823726 CCTTTATGGTGTATTTCGTATGTTG
1 CCTTTGTGGTGTATTTTG-A--TAG
*
22823751 CCTTTGTGGTGCATTTTGATAG
1 CCTTTGTGGTGTATTTTGATAG
22823773 CCTTT
1 CCTTT
22823778 ATGGCATATT
Statistics
Matches: 74, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
22 36 0.49
23 3 0.04
24 3 0.04
25 32 0.43
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.48
Consensus pattern (22 bp):
CCTTTGTGGTGTATTTTGATAG
Found at i:22823726 original size:47 final size:47
Alignment explanation
Indices: 22823668--22823847 Score: 216
Period size: 47 Copynumber: 3.8 Consensus size: 47
22823658 CTTTGTAATG
* * * *
22823668 TATTTTGATAGCCTTTGTGGTGTATTCCGCATGTTACCTTTGTGGCA
1 TATTTTGATAGCCTTTATGGTGTATTTCGTATGTTGCCTTTGTGGCA
**
22823715 TATTTTGATAGCCTTTATGGTGTATTTCGTATGTTGCCTTTGTGGTG
1 TATTTTGATAGCCTTTATGGTGTATTTCGTATGTTGCCTTTGTGGCA
* ** *
22823762 CATTTTGATAGCCTTTATGGCATATTTCGTATGTTGCCTTTGAGGCA
1 TATTTTGATAGCCTTTATGGTGTATTTCGTATGTTGCCTTTGTGGCA
* * ** **
22823809 TATTCTGATAGCCTTTGTGGCATATTTTATATGTTGCCT
1 TATTTTGATAGCCTTTATGGTGTATTTCGTATGTTGCCT
22823848 AGCGTATTCT
Statistics
Matches: 116, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 116 1.00
ACGTcount: A:0.16, C:0.15, G:0.22, T:0.47
Consensus pattern (47 bp):
TATTTTGATAGCCTTTATGGTGTATTTCGTATGTTGCCTTTGTGGCA
Found at i:22823754 original size:25 final size:25
Alignment explanation
Indices: 22823725--22823802 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
22823715 TATTTTGATA
22823725 GCCTTTATGGTGTATTTCGTATGTT
1 GCCTTTATGGTGTATTTCGTATGTT
* * * *
22823750 GCCTTTGTGGTGCATTTTG-A--TA
1 GCCTTTATGGTGTATTTCGTATGTT
**
22823772 GCCTTTATGGCATATTTCGTATGTT
1 GCCTTTATGGTGTATTTCGTATGTT
22823797 GCCTTT
1 GCCTTT
22823803 GAGGCATATT
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
22 15 0.38
23 1 0.03
24 1 0.03
25 23 0.57
ACGTcount: A:0.13, C:0.15, G:0.23, T:0.49
Consensus pattern (25 bp):
GCCTTTATGGTGTATTTCGTATGTT
Found at i:22823788 original size:22 final size:22
Alignment explanation
Indices: 22823704--22823836 Score: 79
Period size: 22 Copynumber: 5.8 Consensus size: 22
22823694 CCGCATGTTA
*
22823704 CCTTTGTGGCATATTTTGATAG
1 CCTTTATGGCATATTTTGATAG
** * *
22823726 CCTTTATGGTGTATTTCGTATGTTG
1 CCTTTATGGCATATTTTG-A--TAG
* ***
22823751 CCTTTGTGGTGCATTTTGATAG
1 CCTTTATGGCATATTTTGATAG
* *
22823773 CCTTTATGGCATATTTCGTATGTTG
1 CCTTTATGGCATATTTTG-A--TAG
*
22823798 CCTTTGA-GGCATATTCTGATAG
1 CCTTT-ATGGCATATTTTGATAG
*
22823820 CCTTTGTGGCATATTTT
1 CCTTTATGGCATATTTT
22823837 ATATGTTGCC
Statistics
Matches: 83, Mismatches: 20, Indels: 16
0.70 0.17 0.13
Matches are distributed among these distances:
22 45 0.54
23 2 0.02
24 2 0.02
25 33 0.40
26 1 0.01
ACGTcount: A:0.16, C:0.15, G:0.23, T:0.47
Consensus pattern (22 bp):
CCTTTATGGCATATTTTGATAG
Found at i:22823796 original size:94 final size:94
Alignment explanation
Indices: 22823669--22823847 Score: 241
Period size: 94 Copynumber: 1.9 Consensus size: 94
22823659 TTTGTAATGT
* ** * *
22823669 ATTTTGATAGCCTTTGTGGTGTATTCCGCATGTTACCTTTGTGGCATATTTTGATAGCCTTTATG
1 ATTTTGATAGCCTTTATGGCATATTCCGCATGTTACCTTTGAGGCATATTCTGATAGCCTTTATG
** *
22823734 GTGTATTTCGTATGTTGCCTTTGTGGTGC
66 GCATATTTCATATGTTGCCTTTGTGGTGC
* * * *
22823763 ATTTTGATAGCCTTTATGGCATATTTCGTATGTTGCCTTTGAGGCATATTCTGATAGCCTTTGTG
1 ATTTTGATAGCCTTTATGGCATATTCCGCATGTTACCTTTGAGGCATATTCTGATAGCCTTTATG
*
22823828 GCATATTTTATATGTTGCCT
66 GCATATTTCATATGTTGCCT
22823848 AGCGTATTCT
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
94 72 1.00
ACGTcount: A:0.16, C:0.15, G:0.22, T:0.46
Consensus pattern (94 bp):
ATTTTGATAGCCTTTATGGCATATTCCGCATGTTACCTTTGAGGCATATTCTGATAGCCTTTATG
GCATATTTCATATGTTGCCTTTGTGGTGC
Found at i:22829504 original size:71 final size:71
Alignment explanation
Indices: 22829388--22829535 Score: 233
Period size: 71 Copynumber: 2.1 Consensus size: 71
22829378 TCTTTCTTGT
* * * *
22829388 GACACACAAGAGCTATGTCACGATAATGCCTGTAGGATGACGCTTCATATGGAGACTGATGCCTA
1 GACACACAAGAGCGATGTCACGACAACGCCTGTAGGATGACGCTTCACATGGAGACTGATGCCTA
22829453 TGTCGC
66 TGTCGC
* * *
22829459 GACACACAGGAGCGATGTCGCGACAACGCTTGTAGGATGACGCTTCACATGGAGACTGATGCCTA
1 GACACACAAGAGCGATGTCACGACAACGCCTGTAGGATGACGCTTCACATGGAGACTGATGCCTA
22829524 TGTCGC
66 TGTCGC
22829530 GACACA
1 GACACA
22829536 AGACCTGGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (71 bp):
GACACACAAGAGCGATGTCACGACAACGCCTGTAGGATGACGCTTCACATGGAGACTGATGCCTA
TGTCGC
Found at i:22831239 original size:11 final size:11
Alignment explanation
Indices: 22831223--22831252 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
22831213 GGAAATCGAC
*
22831223 AAGGGAATTGG
1 AAGGGAAATGG
22831234 AAGGGAAATGG
1 AAGGGAAATGG
22831245 AAGGGAAA
1 AAGGGAAA
22831253 GCGAGAGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.43, T:0.10
Consensus pattern (11 bp):
AAGGGAAATGG
Found at i:22832459 original size:41 final size:41
Alignment explanation
Indices: 22832402--22832485 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
22832392 TCTTTAGCTC
22832402 CTTATGAAAAAAATATTCACACCTGGGAAACATGACAAAGA
1 CTTATGAAAAAAATATTCACACCTGGGAAACATGACAAAGA
22832443 CTTATGAAAAAAATATTCACACCTGGGAAACATGACAAAGA
1 CTTATGAAAAAAATATTCACACCTGGGAAACATGACAAAGA
22832484 CT
1 CT
22832486 AAGTGTGTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.48, C:0.18, G:0.14, T:0.20
Consensus pattern (41 bp):
CTTATGAAAAAAATATTCACACCTGGGAAACATGACAAAGA
Found at i:22833328 original size:21 final size:21
Alignment explanation
Indices: 22833302--22833352 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
22833292 TGAGGTAATA
22833302 CTACCGATACAAGT-ATGACTT
1 CTACCGATACAAGTAATG-CTT
* *
22833323 CTACCGAAACATGTAATGCTT
1 CTACCGATACAAGTAATGCTT
22833344 CTACCGATA
1 CTACCGATA
22833353 TTAAAAACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (21 bp):
CTACCGATACAAGTAATGCTT
Found at i:22842484 original size:2 final size:2
Alignment explanation
Indices: 22842477--22842519 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
22842467 TAATGAACTC
22842477 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
22842519 C
1 C
22842520 AAGTTTTTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:22843349 original size:34 final size:34
Alignment explanation
Indices: 22843285--22843351 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
22843275 TAAAATTATT
*
22843285 AGAATTTTATAATTCAAAAAAATAATTATAAAAG
1 AGAATTTTATAATTAAAAAAAATAATTATAAAAG
22843319 AGAATATTTAT-ATTAAAAATAAATAA-TATAAAA
1 AGAAT-TTTATAATTAAAAA-AAATAATTATAAAA
22843352 TAATTAGTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 19 0.63
35 11 0.37
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (34 bp):
AGAATTTTATAATTAAAAAAAATAATTATAAAAG
Found at i:22843898 original size:8 final size:8
Alignment explanation
Indices: 22843885--22843909 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
22843875 TGTTACTCGA
22843885 TCACAAAC
1 TCACAAAC
22843893 TCACAAAC
1 TCACAAAC
22843901 TCACAAAC
1 TCACAAAC
22843909 T
1 T
22843910 ATATGTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (8 bp):
TCACAAAC
Found at i:22845931 original size:22 final size:22
Alignment explanation
Indices: 22845906--22845977 Score: 126
Period size: 22 Copynumber: 3.3 Consensus size: 22
22845896 CAAAACATTA
*
22845906 TTTTGTAACTCTCTTCATAATG
1 TTTTGTAACTCTCCTCATAATG
*
22845928 TTTTGTAACTCTCCTCATAATA
1 TTTTGTAACTCTCCTCATAATG
22845950 TTTTGTAACTCTCCTCATAATG
1 TTTTGTAACTCTCCTCATAATG
22845972 TTTTGT
1 TTTTGT
22845978 TTTAAATTTC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.22, C:0.19, G:0.08, T:0.50
Consensus pattern (22 bp):
TTTTGTAACTCTCCTCATAATG
Found at i:22845937 original size:44 final size:44
Alignment explanation
Indices: 22845887--22845977 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
22845877 TCACCATTTC
*
22845887 TGTAACT-TAC-AAAACATTATTTTGTAACTCTCTTCATAATGTTT
1 TGTAACTCTACTAAAA-A-TATTTTGTAACTCTCCTCATAATGTTT
* * *
22845931 TGTAACTCTCCTCATAATATTTTGTAACTCTCCTCATAATGTTT
1 TGTAACTCTACTAAAAATATTTTGTAACTCTCCTCATAATGTTT
22845975 TGT
1 TGT
22845978 TTTAAATTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
44 36 0.88
45 3 0.07
46 2 0.05
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.46
Consensus pattern (44 bp):
TGTAACTCTACTAAAAATATTTTGTAACTCTCCTCATAATGTTT
Found at i:22850998 original size:12 final size:13
Alignment explanation
Indices: 22850969--22851029 Score: 54
Period size: 14 Copynumber: 4.5 Consensus size: 13
22850959 GTCGGAACGA
*
22850969 CTTCTTCTT-CTT
1 CTTCTTTTTCCTT
*
22850981 TTTCTTTTTCCTT
1 CTTCTTTTTCCTT
22850994 C-TCTTCTCTTCCTT
1 CTTCTT-T-TTCCTT
22851008 CTTCTCTTTTCTCTT
1 CTTCT-TTTTC-CTT
22851023 CTTCTTT
1 CTTCTTT
22851030 AATACCCATA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
12 11 0.28
13 4 0.10
14 12 0.30
15 12 0.30
16 1 0.03
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (13 bp):
CTTCTTTTTCCTT
Found at i:22850999 original size:24 final size:24
Alignment explanation
Indices: 22850971--22851029 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
22850961 CGGAACGACT
22850971 TCTTCTTCTTTTTCTT-T-TTCCTTC
1 TCTTCTTCTTTTTCTTCTCTT--TTC
*
22850995 TCTTC-TCTTCCTTCTTCTCTTTTC
1 TCTTCTTCTT-TTTCTTCTCTTTTC
22851019 TCTTCTTCTTT
1 TCTTCTTCTTT
22851030 AATACCCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
23 4 0.14
24 18 0.62
25 5 0.17
26 2 0.07
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (24 bp):
TCTTCTTCTTTTTCTTCTCTTTTC
Found at i:22856082 original size:17 final size:17
Alignment explanation
Indices: 22856060--22856103 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
22856050 CATTGCAAGG
*
22856060 AATGGGCGTCCCAAAAT
1 AATGGGCGCCCCAAAAT
22856077 AATGGGCGCCCCAAAAT
1 AATGGGCGCCCCAAAAT
22856094 AATGGGCGCC
1 AATGGGCGCC
22856104 TCTTTATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.14
Consensus pattern (17 bp):
AATGGGCGCCCCAAAAT
Found at i:22860266 original size:30 final size:30
Alignment explanation
Indices: 22860222--22860336 Score: 151
Period size: 30 Copynumber: 3.9 Consensus size: 30
22860212 GAGACAAGAC
* *
22860222 AACCACTTGGAAATGTGGGGGGGGTCCTAG
1 AACCACTTGAAAATGTGGGGGGTGTCCTAG
* *
22860252 AACTACTTGAAAATGT-GCGGGTGTCCTAG
1 AACCACTTGAAAATGTGGGGGGTGTCCTAG
* * *
22860281 AACCACTTGAAAATATAGGGGGTGTCCTAA
1 AACCACTTGAAAATGTGGGGGGTGTCCTAG
*
22860311 AACCACTTGAAAATGTGAGGGGTGTC
1 AACCACTTGAAAATGTGGGGGGTGTC
22860337 TTGTTAACGT
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
29 25 0.34
30 48 0.66
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (30 bp):
AACCACTTGAAAATGTGGGGGGTGTCCTAG
Found at i:22860319 original size:59 final size:60
Alignment explanation
Indices: 22860222--22860336 Score: 160
Period size: 59 Copynumber: 1.9 Consensus size: 60
22860212 GAGACAAGAC
* * * * *
22860222 AACCACTTGGAAATGTGGGGGGGGTCCTAGAACTACTTGAAAATGTG-CGGGTGTCCTAG
1 AACCACTTGAAAATATAGGGGGGGTCCTAAAACCACTTGAAAATGTGACGGGTGTCCTAG
* *
22860281 AACCACTTGAAAATATAGGGGGTGTCCTAAAACCACTTGAAAATGTGAGGGGTGTC
1 AACCACTTGAAAATATAGGGGGGGTCCTAAAACCACTTGAAAATGTGACGGGTGTC
22860337 TTGTTAACGT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
59 41 0.85
60 7 0.15
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (60 bp):
AACCACTTGAAAATATAGGGGGGGTCCTAAAACCACTTGAAAATGTGACGGGTGTCCTAG
Found at i:22861891 original size:30 final size:29
Alignment explanation
Indices: 22861818--22861952 Score: 157
Period size: 30 Copynumber: 4.5 Consensus size: 29
22861808 TTTTAGAGAA
* *
22861818 TTTGGGGTCAAAATGTAATTTTGGAAAAG
1 TTTGGGGTTAAAATGTGATTTTGGAAAAG
22861847 TTTAGAGGGTTAAAATGTGATTTTGGAAAAG
1 TTT-G-GGGTTAAAATGTGATTTTGGAAAAG
* *
22861878 TTTGGGCGTTAAAATGTGAGTTT-AAGAAAG
1 TTTGGG-GTTAAAATGTGATTTTGGA-AAAG
*
22861908 TTTGGGGGTTAAAATAT-ATTTTGGAAAAG
1 TTT-GGGGTTAAAATGTGATTTTGGAAAAG
22861937 TTTAGGGGTTAAAATG
1 TTT-GGGGTTAAAATG
22861953 CAATTTTATA
Statistics
Matches: 91, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
29 28 0.31
30 34 0.37
31 29 0.32
ACGTcount: A:0.34, C:0.01, G:0.29, T:0.36
Consensus pattern (29 bp):
TTTGGGGTTAAAATGTGATTTTGGAAAAG
Found at i:22863495 original size:12 final size:12
Alignment explanation
Indices: 22863466--22863496 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
22863456 TTGGACATTT
22863466 TTAAATTTAAAA
1 TTAAATTTAAAA
22863478 -TAAATTTAAAA
1 TTAAATTTAAAA
22863489 TTAAATTT
1 TTAAATTT
22863497 TTTGGGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TTAAATTTAAAA
Found at i:22864313 original size:207 final size:206
Alignment explanation
Indices: 22863906--22864420 Score: 711
Period size: 207 Copynumber: 2.5 Consensus size: 206
22863896 ATCTTTTGGT
* * *
22863906 CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTCCACTCACATTGAGCGTCGC-T--
1 CCACTTTTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCA
* * *
22863968 TC-A-TTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGTTTCATTGATTTAATCCATTTC
66 TCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCACTGATTTAATCCATTTC
* * * *
22864031 TGTATCTCATCAAGAAGACGGATTTGGTTCACTTCTCTGTATCTTATCAAGAAGGTGACCGTTTT
131 TGTATCTCATCAAGAAGACGAATTTGGTTCACTTCTCTGTATCTCATCAAGAAAGTGACCGCTTT
*
22864096 ATTTCTTTGAC
196 ATTGCTTTGAC
*
22864107 CTACTTTTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCA
1 CCACTTTTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCA
* *
22864172 TCGATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACTGCTTC-CTGATTTAATCCACTTC
66 TCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCACTGATTTAATCCA-TT-
* * *
22864236 TCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTTTGTATCTCATCAGGAAAGTGACCGCT
129 TCTGTATCTCATCAAGAAGACGAATTTGGTTCACTTCTCTGTATCTCATCAAGAAAGTGACCGCT
22864301 TTATTGCTTTGAC
194 TTATTGCTTTGAC
* * * ***
22864314 CCACTTCTT-TGTATCTCATCAGGAAGATGGGGTTTAAAGTCTCATTTGTATTGAGCTTCGCTTC
1 CCACTT-TTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTC
* * * *
22864378 ATTGATTTGGTTTACTTCTCTATATCTCATCAGAAAGATGACC
65 ATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACC
22864421 TTTTGAAGTT
Statistics
Matches: 276, Mismatches: 30, Indels: 10
0.87 0.09 0.03
Matches are distributed among these distances:
201 57 0.21
202 1 0.00
204 2 0.01
205 13 0.05
206 40 0.14
207 161 0.58
208 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (206 bp):
CCACTTTTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCA
TCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCACTGATTTAATCCATTTC
TGTATCTCATCAAGAAGACGAATTTGGTTCACTTCTCTGTATCTCATCAAGAAAGTGACCGCTTT
ATTGCTTTGAC
Found at i:22864970 original size:49 final size:50
Alignment explanation
Indices: 22864917--22865075 Score: 132
Period size: 49 Copynumber: 3.2 Consensus size: 50
22864907 ACCATTATGG
* * *
22864917 CTTCAATCTTTCCCT-TCACATCGCTAAGGTATAAGGTTTG-CTGTTGCGA
1 CTTCAATCTTTCCCTATCACATCGCTAAGGTACAAGATTTGTC-ATTGCGA
* *
22864966 CTTCAACCTTT-CCTATCACATCTCTAAGGTACAAGATTTGTCATTGCGA
1 CTTCAATCTTTCCCTATCACATCGCTAAGGTACAAGATTTGTCATTGCGA
* * * *** * *
22865015 CTTTAATCTCTT-CC-ATCACATTC-TTATGGTACAAGATTCACCGTTGCGG
1 CTTCAATCT-TTCCCTATCACA-TCGCTAAGGTACAAGATTTGTCATTGCGA
22865064 CTTCAATCTTTC
1 CTTCAATCTTTC
22865076 ACATCTCGTC
Statistics
Matches: 90, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
48 5 0.06
49 78 0.87
50 7 0.08
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (50 bp):
CTTCAATCTTTCCCTATCACATCGCTAAGGTACAAGATTTGTCATTGCGA
Found at i:22867444 original size:48 final size:46
Alignment explanation
Indices: 22867346--22867467 Score: 140
Period size: 48 Copynumber: 2.6 Consensus size: 46
22867336 AACAGTAGCA
* *
22867346 TGCTCTCCGATTAGCACTGTGTGTGCTCTCTGTTTAGCATTGTGTG
1 TGCTCTCTGATTAGCACTGTCTGTGCTCTCTGTTTAGCATTGTGTG
* *
22867392 TGCTCTCTGTTTAGCAC-GTCTCGTGCTCTCTATTATTAGCATT-TCGTG
1 TGCTCTCTGATTAGCACTGTCT-GTGCTCTCT-GT-TTAGCATTGT-GTG
* *
22867440 TGCTCTCTGATTAGCACTTTGTGTGCTC
1 TGCTCTCTGATTAGCACTGTCTGTGCTC
22867468 AATATTTTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
45 3 0.05
46 24 0.38
47 2 0.03
48 33 0.52
49 2 0.03
ACGTcount: A:0.11, C:0.24, G:0.22, T:0.43
Consensus pattern (46 bp):
TGCTCTCTGATTAGCACTGTCTGTGCTCTCTGTTTAGCATTGTGTG
Found at i:22867496 original size:39 final size:39
Alignment explanation
Indices: 22867432--22867506 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
22867422 TATTATTAGC
* *
22867432 ATTTCGTGTGCTCTCTGATTAGCACTTTGTGTGCTCAAT
1 ATTTCGTGTACTCTCTGATTAGCACTGTGTGTGCTCAAT
* *
22867471 ATTTTGTGTACTCTCTGTTTAGCACTGTGTGTGCTC
1 ATTTCGTGTACTCTCTGATTAGCACTGTGTGTGCTC
22867507 TCTGTTTCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.13, C:0.20, G:0.21, T:0.45
Consensus pattern (39 bp):
ATTTCGTGTACTCTCTGATTAGCACTGTGTGTGCTCAAT
Found at i:22867511 original size:23 final size:22
Alignment explanation
Indices: 22867346--22867540 Score: 123
Period size: 23 Copynumber: 8.6 Consensus size: 22
22867336 AACAGTAGCA
* *
22867346 TGCTCTCCGATTAGCACTGTGTG
1 TGCTCTCTGTTTAGCACT-TGTG
*
22867369 TGCTCTCTGTTTAGCATTGTGTG
1 TGCTCTCTGTTTAGCACT-TGTG
* *
22867392 TGCTCTCTGTTTAGCACGTCTCG
1 TGCTCTCTGTTTAGCACTTGT-G
* *
22867415 TGCTCTCTATTATTAGCATTTCGTG
1 TGCTCTCT-GT-TTAGCACTT-GTG
*
22867440 TGCTCTCTGATTAGCACTTTGTG
1 TGCTCTCTGTTTAGCAC-TTGTG
** *
22867463 TGCTCAAT-ATT-----TTGTG
1 TGCTCTCTGTTTAGCACTTGTG
*
22867479 TACTCTCTGTTTAGCACTGTGTG
1 TGCTCTCTGTTTAGCACT-TGTG
*
22867502 TGCTCTCTGTTTCCTAGCACTTATG
1 TGCTCTCTG-TT--TAGCACTTGTG
*
22867527 TGCTCTTTGTTTAG
1 TGCTCTCTGTTTAG
22867541 TATTTCGGTA
Statistics
Matches: 135, Mismatches: 22, Indels: 31
0.72 0.12 0.16
Matches are distributed among these distances:
16 10 0.07
17 2 0.01
22 9 0.07
23 72 0.53
24 7 0.05
25 27 0.20
26 8 0.06
ACGTcount: A:0.12, C:0.22, G:0.21, T:0.45
Consensus pattern (22 bp):
TGCTCTCTGTTTAGCACTTGTG
Found at i:22867528 original size:25 final size:26
Alignment explanation
Indices: 22867490--22867538 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
22867480 ACTCTCTGTT
*
22867490 TAGCACTGTGTGTGCTCTCTGTTTCC
1 TAGCACTGTATGTGCTCTCTGTTTCC
*
22867516 TAGCACT-TATGTGCTCTTTGTTT
1 TAGCACTGTATGTGCTCTCTGTTT
22867539 AGTATTTCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.10, C:0.22, G:0.20, T:0.47
Consensus pattern (26 bp):
TAGCACTGTATGTGCTCTCTGTTTCC
Found at i:22870157 original size:21 final size:21
Alignment explanation
Indices: 22870132--22870220 Score: 81
Period size: 21 Copynumber: 4.0 Consensus size: 21
22870122 CTCGACCCTT
22870132 TTCTTTTTCCTTTTTTTCTTC
1 TTCTTTTTCCTTTTTTTCTTC
22870153 TTCTTTTTTCTTTCTTTCTTTTTCCTTC
1 TTC-TTTTTC---C-TT-TTTTT-CTTC
*
22870181 TTTTTTTTCC-TTTTTTCTTC
1 TTCTTTTTCCTTTTTTTCTTC
* *
22870201 TTCTTTTTTCTTTCTTTCTT
1 TTCTTTTTCCTTTTTTTCTT
22870221 TTTCCTCTCT
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
20 12 0.21
21 16 0.29
22 7 0.12
24 1 0.02
25 1 0.02
26 2 0.04
27 11 0.20
28 6 0.11
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (21 bp):
TTCTTTTTCCTTTTTTTCTTC
Found at i:22870159 original size:13 final size:13
Alignment explanation
Indices: 22870143--22870237 Score: 87
Period size: 13 Copynumber: 7.5 Consensus size: 13
22870133 TCTTTTTCCT
22870143 TTTTTTCTTCTTC
1 TTTTTTCTTCTTC
22870156 TTTTTTC-T-TTC
1 TTTTTTCTTCTTC
22870167 TTTCTTT-TTCCTTC
1 TTT-TTTCTT-CTTC
22870181 TTTTTT-TTC--C
1 TTTTTTCTTCTTC
22870191 TTTTTTCTTCTTC
1 TTTTTTCTTCTTC
22870204 TTTTTTCTTTCTTTC
1 TTTTTTC-TTC-TTC
*
22870219 TTTTTCCTCTCTT-
1 TTTTTTCT-TCTTC
22870232 TTTTTT
1 TTTTTT
22870238 GACCTCTTTT
Statistics
Matches: 70, Mismatches: 2, Indels: 20
0.76 0.02 0.22
Matches are distributed among these distances:
10 7 0.10
11 9 0.13
12 6 0.09
13 25 0.36
14 12 0.17
15 11 0.16
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTTCTTCTTC
Found at i:22870163 original size:10 final size:9
Alignment explanation
Indices: 22870130--22870237 Score: 69
Period size: 10 Copynumber: 11.4 Consensus size: 9
22870120 ATCTCGACCC
22870130 TTTTCTTTT
1 TTTTCTTTT
*
22870139 TCCTT-TTTT
1 T-TTTCTTTT
*
22870148 TCTTCTTCTT
1 TTTTCTT-TT
22870158 TTTTC-TTT
1 TTTTCTTTT
*
22870166 CTTTCTTTT
1 TTTTCTTTT
*
22870175 TCCTTCTTTT
1 T-TTTCTTTT
22870185 TTTTCCTTTT
1 TTTT-CTTTT
22870195 TTCTTCTTCTT
1 TT-TTCTT-TT
22870206 TTTTC-TTT
1 TTTTCTTTT
*
22870214 CTTTCTTTT
1 TTTTCTTTT
*
22870223 TCCTCTCTTTT
1 T--TTTCTTTT
22870234 TTTT
1 TTTT
22870238 GACCTCTTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
8 15 0.19
9 20 0.26
10 29 0.37
11 14 0.18
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:22870174 original size:27 final size:27
Alignment explanation
Indices: 22870144--22870235 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 27
22870134 CTTTTTCCTT
22870144 TTTTTCTTCTTCTTTTTTCTTTCTTTC
1 TTTTTCTTCTTCTTTTTTCTTTCTTTC
*
22870171 TTTTTC--CTTC-TTTTT-TTTC-CT-
1 TTTTTCTTCTTCTTTTTTCTTTCTTTC
22870192 TTTTTCTTCTTCTTTTTTCTTTCTTTC
1 TTTTTCTTCTTCTTTTTTCTTTCTTTC
*
22870219 TTTTTCCTC-TCTTTTTT
1 TTTTTCTTCTTCTTTTTT
22870236 TTGACCTCTT
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
21 6 0.11
22 1 0.02
23 8 0.14
24 10 0.18
25 8 0.14
26 9 0.16
27 14 0.25
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (27 bp):
TTTTTCTTCTTCTTTTTTCTTTCTTTC
Found at i:22870209 original size:49 final size:50
Alignment explanation
Indices: 22870135--22870237 Score: 192
Period size: 48 Copynumber: 2.1 Consensus size: 50
22870125 GACCCTTTTC
22870135 TTTTTCCTTTTTTTCTTCTTCTTTTTTCTTTCTTTCTTTTTCCT-TCTTT
1 TTTTTCCTTTTTTTCTTCTTCTTTTTTCTTTCTTTCTTTTTCCTCTCTTT
22870184 TTTTTCC-TTTTTTCTTCTTCTTTTTTCTTTCTTTCTTTTTCCTCTCTTT
1 TTTTTCCTTTTTTTCTTCTTCTTTTTTCTTTCTTTCTTTTTCCTCTCTTT
22870233 TTTTT
1 TTTTT
22870238 GACCTCTTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
48 36 0.68
49 17 0.32
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (50 bp):
TTTTTCCTTTTTTTCTTCTTCTTTTTTCTTTCTTTCTTTTTCCTCTCTTT
Found at i:22870236 original size:27 final size:24
Alignment explanation
Indices: 22870135--22870237 Score: 113
Period size: 25 Copynumber: 4.2 Consensus size: 24
22870125 GACCCTTTTC
*
22870135 TTTTTCCTTT-TTTTCTTCTTCTTT
1 TTTTTCCTTTCTTTT-TCCTTCTTT
*
22870159 TTTCTTTCTTTCTTTTTCCTTCTTT
1 TTT-TTCCTTTCTTTTTCCTTCTTT
22870184 TTTTTCCTTT-TTTCTT-CTTCTTT
1 TTTTTCCTTTCTTT-TTCCTTCTTT
*
22870207 TTTCTTTCTTTCTTTTTCCTCTCTTT
1 TTT-TTCCTTTCTTTTTCCT-TCTTT
22870233 TTTTT
1 TTTTT
22870238 GACCTCTTTT
Statistics
Matches: 68, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
23 13 0.19
24 19 0.28
25 24 0.35
26 12 0.18
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTCCTTTCTTTTTCCTTCTTT
Found at i:22880217 original size:27 final size:26
Alignment explanation
Indices: 22880187--22880239 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22880177 ATTAAAACCC
22880187 AAATTATTAATGAAAT-ATTTTATATTT
1 AAATTATTAA--AAATAATTTTATATTT
*
22880214 AAATTATTAAATATAATTTTATATTT
1 AAATTATTAAAAATAATTTTATATTT
22880240 TATTATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 3 0.12
26 11 0.46
27 10 0.42
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
AAATTATTAAAAATAATTTTATATTT
Found at i:22883728 original size:59 final size:59
Alignment explanation
Indices: 22883562--22883728 Score: 181
Period size: 59 Copynumber: 2.8 Consensus size: 59
22883552 CGGATAATTT
* * * * * *
22883562 GGGGTTAAAATGTAATTTTAGAAAAATTTAGGTGCCAAAATGTTATTTTGGAAAAGTTTT
1 GGGGTTAAAATATAATTTTAGAAAAGTTT-GGGGACAAAATGTAATTTTGGAAAAGTTTA
* * * * * *
22883622 GAGGTTAAAATATGATTTTGGGAAAGTTTGGGGACAAAATGTGATTTTGGGAAAGTTTA
1 GGGGTTAAAATATAATTTTAGAAAAGTTTGGGGACAAAATGTAATTTTGGAAAAGTTTA
* * * *
22883681 GGGGTCAAAATATAATTTTTGAAAAGTTTGGGGTCAAAATATAATTTT
1 GGGGTTAAAATATAATTTTAGAAAAGTTTGGGGACAAAATGTAATTTT
22883729 AAAAAATAAG
Statistics
Matches: 88, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
59 65 0.74
60 23 0.26
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.37
Consensus pattern (59 bp):
GGGGTTAAAATATAATTTTAGAAAAGTTTGGGGACAAAATGTAATTTTGGAAAAGTTTA
Found at i:22883734 original size:29 final size:29
Alignment explanation
Indices: 22883559--22883728 Score: 160
Period size: 30 Copynumber: 5.8 Consensus size: 29
22883549 TTTCGGATAA
* * * *
22883559 TTTGGGGTTAAAATGTAATTTTAGAAAAA
1 TTTGGGGTCAAAATATAATTTTGGAAAAG
* * * *
22883588 TTTAGGTGCCAAAATGTTATTTTGGAAAAG
1 TTT-GGGGTCAAAATATAATTTTGGAAAAG
* * * *
22883618 TTTTGAGGTTAAAATATGATTTTGGGAAAG
1 -TTTGGGGTCAAAATATAATTTTGGAAAAG
* * * *
22883648 TTTGGGGACAAAATGTGATTTTGGGAAAG
1 TTTGGGGTCAAAATATAATTTTGGAAAAG
*
22883677 TTTAGGGGTCAAAATATAATTTTTGAAAAG
1 TTT-GGGGTCAAAATATAATTTTGGAAAAG
22883707 TTTGGGGTCAAAATATAATTTT
1 TTTGGGGTCAAAATATAATTTT
22883729 AAAAAATAAG
Statistics
Matches: 116, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
29 50 0.43
30 63 0.54
31 3 0.03
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (29 bp):
TTTGGGGTCAAAATATAATTTTGGAAAAG
Found at i:22885770 original size:18 final size:18
Alignment explanation
Indices: 22885747--22885781 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22885737 CATCTAATAC
*
22885747 TGTTCCTTGTAATTATTT
1 TGTTCCTTGTAAATATTT
22885765 TGTTCCTTGTAAATATT
1 TGTTCCTTGTAAATATT
22885782 CGGTAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57
Consensus pattern (18 bp):
TGTTCCTTGTAAATATTT
Found at i:22886269 original size:49 final size:50
Alignment explanation
Indices: 22886211--22886880 Score: 627
Period size: 49 Copynumber: 13.7 Consensus size: 50
22886201 GTACCATGAA
* *
22886211 ACATGAAGGGAAAGGTTTAAGTCGCAACGGTGAACCTTATACCTCAGAAG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAACCTTATACCTCAGAAG
* *
22886261 -CATGAAGGGAAAGATTTAAGTCGCAACGGCGAATC-TAGTACCACA-AAG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAACCTTA-TACCTCAGAAG
* * * * *
22886309 ATATGGAGGGAAAGGTTTAAGTCGCAATGGCGAGCCTTATACCTCAGAAG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAACCTTATACCTCAGAAG
* *
22886359 -CATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCC--AGTACCAC-GAAG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAA-CCTTA-TACCTCAGAAG
* * * *
22886407 ATATGAAGGGAAAGGTTTAAGCCGCAATGGCGAACCTTATACCTCAG-AG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAACCTTATACCTCAGAAG
* * *
22886456 ACATGAAGGGAAAGATTTAAGCCGCAACGGTGAATCC--AGTACCAC-GAAG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAA-CCTTA-TACCTCAGAAG
* * * * *
22886505 ACACGAAGGGAAAGGTTTAAGTCGTAATGGCGAACATTATACCTCAGAAG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAACCTTATACCTCAGAAG
*
22886555 -CATGAAGGGAAAGATTTAAG-CTGCAACGGCGAATCC--AGTACCAC-GAAG
1 ACATGAAGGGAAAGATTTAAGTC-GCAACGGCGAA-CCTTA-TACCTCAGAAG
* * * *
22886603 ACACGAAGGGAAAGGTTTAAGTCGAAATGGCGAACCTTATACCTCAGAAG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAACCTTATACCTCAGAAG
* * *
22886653 -CATGAAGGGAAAGATTTAAGCCTCAACGGCGAATCC--AGTACCAC-GAAG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAA-CCTTA-TACCTCAGAAG
* * * * *
22886701 ACACGAAGGGAAAGGTTTAAGTTGAAATGGCGAACCTTATACCTCAG-AG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAACCTTATACCTCAGAAG
* * * *
22886750 ACATGAAGGGAAAGATTTAAGCCGCAATGGCAAATCC--AGTACCAC-GAAG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAA-CCTTA-TACCTCAGAAG
** * * *
22886799 ACACAAAGGGAAAGGTTTAAGTCGCAATGGTGAACCTTATACCTCAGAAG
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAACCTTATACCTCAGAAG
* *
22886849 -CATGAAAGGAAA-ATTTAAGCCGCAACGGCGAA
1 ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAA
22886881 TTTAGTACCA
Statistics
Matches: 502, Mismatches: 82, Indels: 74
0.76 0.12 0.11
Matches are distributed among these distances:
48 50 0.10
49 418 0.83
50 34 0.07
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.17
Consensus pattern (50 bp):
ACATGAAGGGAAAGATTTAAGTCGCAACGGCGAACCTTATACCTCAGAAG
Found at i:22886386 original size:98 final size:98
Alignment explanation
Indices: 22886199--22886890 Score: 1077
Period size: 98 Copynumber: 7.1 Consensus size: 98
22886189 CTACAGGTCT
* * * *
22886199 CAGTACCATGAA-ACATGAAGGGAAAGGTTTAAGTCGCAACGGTGAACCTTATACCTCAGAAGCA
1 CAGTACCACGAAGACACGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAGCA
*
22886263 TGAAGGGAAAGATTTAAGTCGCAACGGCGAATC
66 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATC
* * * * * *
22886296 TAGTACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCAATGGCGAGCCTTATACCTCAGAAGCA
1 CAGTACCACGAAGACACGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAGCA
22886361 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATC
66 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATC
* * *
22886394 CAGTACCACGAAGATATGAAGGGAAAGGTTTAAGCCGCAATGGCGAACCTTATACCTCAG-AGAC
1 CAGTACCACGAAGACACGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAG-C
*
22886458 ATGAAGGGAAAGATTTAAGCCGCAACGGTGAATC
65 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAATC
* *
22886492 CAGTACCACGAAGACACGAAGGGAAAGGTTTAAGTCGTAATGGCGAACATTATACCTCAGAAGCA
1 CAGTACCACGAAGACACGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAGCA
*
22886557 TGAAGGGAAAGATTTAAGCTGCAACGGCGAATC
66 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATC
*
22886590 CAGTACCACGAAGACACGAAGGGAAAGGTTTAAGTCGAAATGGCGAACCTTATACCTCAGAAGCA
1 CAGTACCACGAAGACACGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAGCA
*
22886655 TGAAGGGAAAGATTTAAGCCTCAACGGCGAATC
66 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATC
* *
22886688 CAGTACCACGAAGACACGAAGGGAAAGGTTTAAGTTGAAATGGCGAACCTTATACCTCAG-AGAC
1 CAGTACCACGAAGACACGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAG-C
* *
22886752 ATGAAGGGAAAGATTTAAGCCGCAATGGCAAATC
65 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAATC
* *
22886786 CAGTACCACGAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGTGAACCTTATACCTCAGAAGCA
1 CAGTACCACGAAGACACGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAGCA
* *
22886851 TGAAAGGAAA-ATTTAAGCCGCAACGGCGAATT
66 TGAAGGGAAAGATTTAAGCCGCAACGGCGAATC
*
22886883 TAGTACCA
1 CAGTACCA
22886891 TGCGTATTGA
Statistics
Matches: 551, Mismatches: 39, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
97 39 0.07
98 508 0.92
99 4 0.01
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.18
Consensus pattern (98 bp):
CAGTACCACGAAGACACGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAGAAGCA
TGAAGGGAAAGATTTAAGCCGCAACGGCGAATC
Found at i:22887322 original size:17 final size:17
Alignment explanation
Indices: 22887297--22887342 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
22887287 CCAACAGAAT
22887297 TTAAATTTATTTTAAAA
1 TTAAATTTATTTTAAAA
* *
22887314 TTAAGTTTATTTTAAAT
1 TTAAATTTATTTTAAAA
22887331 TTAAATTTATTT
1 TTAAATTTATTT
22887343 AAATATTATC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (17 bp):
TTAAATTTATTTTAAAA
Found at i:22887369 original size:13 final size:13
Alignment explanation
Indices: 22887351--22887375 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22887341 TTAAATATTA
22887351 TCCAATTACAAAG
1 TCCAATTACAAAG
22887364 TCCAATTACAAA
1 TCCAATTACAAA
22887376 TTGGGCCCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.04, T:0.24
Consensus pattern (13 bp):
TCCAATTACAAAG
Found at i:22889063 original size:30 final size:30
Alignment explanation
Indices: 22889006--22889269 Score: 151
Period size: 30 Copynumber: 8.9 Consensus size: 30
22888996 CCCAAAACGT
* * **
22889006 CCCTAAACTGTCCAAAAATCATTTTTTGAC
1 CCCTAAACTTTCCAAAAATTACATTTTGAC
*
22889036 CCCTCAACTTTCCAAAAATTACATTTTGATC
1 CCCTAAACTTTCCAAAAATTACATTTTGA-C
*
22889067 TCC-AAACTTTCCAAAAAAATTACATTTT-AC
1 CCCTAAACTTTCC--AAAAATTACATTTTGAC
*** * * *
22889097 CCCTAAA-TTTTTGAAAATTCCATTTTTAA
1 CCCTAAACTTTCCAAAAATTACATTTTGAC
*
22889126 CCCTAAACCTTCCAAAAATTACCATTTT-AC
1 CCCTAAACTTTCCAAAAATTA-CATTTTGAC
* *
22889156 CCTCGAATA-TTT--AAAAATTCCATTTTTGA-
1 CC-CTAA-ACTTTCCAAAAATTACA-TTTTGAC
22889185 CCCTAAAAC-TTCCAAAAATTACCATTTT-AC
1 CCCT-AAACTTTCCAAAAATTA-CATTTTGAC
** *
22889215 CCCCGAA-TATCCAAAAATT-CTATTTTTGA-
1 CCCTAAACTTTCCAAAAATTAC-A-TTTTGAC
*
22889244 CCTTGAAA-TTTCCAAAAATTACATTT
1 CCCT-AAACTTTCCAAAAATTACATTT
22889270 AATCTCGATT
Statistics
Matches: 180, Mismatches: 31, Indels: 47
0.70 0.12 0.18
Matches are distributed among these distances:
27 1 0.01
28 19 0.11
29 45 0.25
30 79 0.44
31 21 0.12
32 15 0.08
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (30 bp):
CCCTAAACTTTCCAAAAATTACATTTTGAC
Found at i:22889173 original size:59 final size:56
Alignment explanation
Indices: 22889081--22889269 Score: 225
Period size: 59 Copynumber: 3.2 Consensus size: 56
22889071 AACTTTCCAA
* * * *
22889081 AAAAATTACATTTTACCCCTAAATTTTTGAAAATTCCATTTTTAACCCTAAACCTTCC
1 AAAAATTACATTTTACCCC-GAATATTTAAAAATTCCATTTTTGACCCTAAA-CTTCC
22889139 AAAAATTACCATTTTACCCTCGAATATTTAAAAATTCCATTTTTGACCCTAAAACTTCC
1 AAAAATTA-CATTTTACCC-CGAATATTTAAAAATTCCATTTTTGACCCT-AAACTTCC
** * * *
22889198 AAAAATTACCATTTTACCCCCGAATATCCAAAAATTCTATTTTTGACCTTGAAATTTCC
1 AAAAATTA-CATTTTA-CCCCGAATATTTAAAAATTCCATTTTTGACCCT-AAACTTCC
22889257 AAAAATTACATTT
1 AAAAATTACATTT
22889270 AATCTCGATT
Statistics
Matches: 117, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
58 13 0.11
59 97 0.83
60 7 0.06
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.37
Consensus pattern (56 bp):
AAAAATTACATTTTACCCCGAATATTTAAAAATTCCATTTTTGACCCTAAACTTCC
Found at i:22894181 original size:18 final size:20
Alignment explanation
Indices: 22894146--22894185 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
22894136 AGTATGAAAC
*
22894146 TATATATGTATGTATATGTA
1 TATATAGGTATGTATATGTA
22894166 TATATAGGTAT-T-TATGTA
1 TATATAGGTATGTATATGTA
22894184 TA
1 TA
22894186 AATATTAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 1 0.05
20 10 0.53
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (20 bp):
TATATAGGTATGTATATGTA
Found at i:22895242 original size:85 final size:85
Alignment explanation
Indices: 22895099--22895263 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 85
22895089 CTTCGCTTCA
* * * * * * * *
22895099 TTGGTCTATTTCTTTGTATCTCATCCGGAAGACGACCACTTCATTGATTTAATCCACTTCT-CTG
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTCATTGATGTAACCCACTT-TGCTA
22895163 TATCTCATCAGGAAGACAGAT
65 TATCTCATCAGGAAGACAGAT
* * *
22895184 TTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTTATTGCTGTGACCCACTTTGCTAT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTCATTGATGTAACCCACTTTGCTAT
22895249 ATCTCATCAGGAAGA
66 ATCTCATCAGGAAGA
22895264 TGACCACTTT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
84 1 0.01
85 67 0.99
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (85 bp):
TTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTCATTGATGTAACCCACTTTGCTAT
ATCTCATCAGGAAGACAGAT
Found at i:22895312 original size:48 final size:47
Alignment explanation
Indices: 22895189--22895312 Score: 176
Period size: 48 Copynumber: 2.6 Consensus size: 47
22895179 CAGATTTGGT
* *
22895189 CCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTTATTGCTGTGAC
1 CCAC-TCTCTGTATCTCATCAGGAAGATGACCACTTTATTACTGTGAC
* * *
22895237 CCACTTTGCTATATCTCATCAGGAAGATGACCACTTTATTACTTTGAC
1 CCACTCT-CTGTATCTCATCAGGAAGATGACCACTTTATTACTGTGAC
22895285 CCACTCCTCTGTATCTCATCAGGAAGAT
1 CCACT-CTCTGTATCTCATCAGGAAGAT
22895313 AGGGGTTTGA
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
47 2 0.03
48 64 0.96
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (47 bp):
CCACTCTCTGTATCTCATCAGGAAGATGACCACTTTATTACTGTGAC
Found at i:22895499 original size:85 final size:85
Alignment explanation
Indices: 22895353--22895513 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 85
22895343 TTGCTTCATT
* *
22895353 GATTTGGTCTACTTCTTTATATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCTC
1 GATTTGGTCCACTTCTCTATATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCTC
22895418 TGTATCTCATCAAGAAGGCG
66 TGTATCTCATCAAGAAGGCG
* * * * * * * *
22895438 GATTTGGTCCAGTTCTCTGTATCTCATTAGGAAGATGATCGCTTTATTGCTTTGA-CTCACTTCT
1 GATTTGGTCCACTTCTCTATATCTCATCAGAAAGATGACCGCTTCATTGATTTAATC-CACTTCT
*
22895502 TTGTATCTCATC
65 CTGTATCTCATC
22895514 TAAAAGAAGA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
84 1 0.02
85 63 0.98
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTATATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCTC
TGTATCTCATCAAGAAGGCG
Found at i:22895509 original size:209 final size:209
Alignment explanation
Indices: 22895248--22896558 Score: 1816
Period size: 209 Copynumber: 6.3 Consensus size: 209
22895238 CACTTTGCTA
* * * *
22895248 TATCTCATCAGGAAGATGACCACTTTATTACTTTGACCCACTCCTCTGTATCTCATCAGGAAGAT
1 TATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCTCATCAGGAAGAT
* *
22895313 AGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCTACTTCTTTATATCTC
66 AGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTC
* *
22895378 ATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTT
131 ATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCGGATTT
*
22895443 GGTCCAGTTCTCTG
196 GGTCCACTTCTCTG
* * * *
22895457 TATCTCATTAGGAAGATGATCGCTTTATTGCTTTGACTCACTTCTTTGTATCTCATCTA-AAAGA
1 TATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCTCATC-AGGAAGA
* * * *
22895521 -AGAGGGTTTGAAGTTTCATTCACATTGAGCTTTGCTTCATGGATTTGGTCTACTTTTCTATATC
65 TAG-GGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATC
* * *
22895585 TCATCAGGAAGATTACCGCTTCATTGCTTTAATCCACTTCTCTGTATCTCATCAGGAAGGTGGAT
129 TCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCGGAT
* *
22895650 TTGGTCTACTTCTCCG
194 TTGGTCCACTTCTCTG
* * **
22895666 TATCTCATCAGAAAGATGACCGCTTTATTACTTTGACCCACTTCTTTGTATCGAATCAGGAAGAT
1 TATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCTCATCAGGAAGAT
* * * *
22895731 -GGGGTCTGAATTTTCACTCACATTGAGCTTCGCTTC----A-TTGGTCTACTTCTTTGTATCTC
66 AGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTC
* * * * * *
22895790 ATCAGGATGACGACCACTTCATTGATTTAATCCACTTCCCTGTATCTCATTAGGAAGACGGATTT
131 ATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCGGATTT
22895855 GGTCCACTTCTCTG
196 GGTCCACTTCTCTG
* * * *
22895869 TATCTCATCAGGAAGAAGACCACTTTATTGCTTTGACCCACTT-TTCTATATCTCATCAGGAATA
1 TATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTT-TGTATCTCATCAGGAAGA
* * * *
22895933 T-GGGAGTTTAAAGTTTCACTCACATTGAG-TTTCACTTCATTGACTTGGTTTACTTCTCTGTAT
65 TAGGG-GTTTGAAGTTTCACTCACATTGAGCTTT-GCTTCATTGATTTGGTCTACTTCTCTGTAT
* * * * **
22895996 CTCATCAGGAAGATGACCACTTCATTGTTTTGATCCACTTCTCTGTATTTCATCAGGAAGATGGA
128 CTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCGGA
*
22896061 TTTGGTCCACTTTTCTG
193 TTTGGTCCACTTCTCTG
* * * * * **
22896078 TATCTCATCAGGAAGATGATCACTTTATTACTTTGACTCACTCCTTTGTATCTCATCAAAAAGAT
1 TATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCTCATCAGGAAGAT
* * *
22896143 GGGGGTTTGAAGTTTCATTCACATTGAGCTTTGCTTTATTGATTTGGTCTACTTCTCTGTATCTC
66 AGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTC
* * *
22896208 ATCAGAAAGATGACTGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCAGATTT
131 ATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCGGATTT
*
22896273 GGTCCACTTCTTTG
196 GGTCCACTTCTCTG
* *
22896287 TATCTCATCAGGAAGATGACCGTTTTATTGCTTTGACTCACTTCTTTGTATCTCATCAGGAAGAT
1 TATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCTCATCAGGAAGAT
*
22896352 AGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTT
66 AGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTC
* * *
22896417 ATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTATATCTCATCAGAAAGGTGGATTT
131 ATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCGGATTT
*
22896482 GGTCCACTTCTCTA
196 GGTCCACTTCTCTG
* * * *
22896496 TATCTCATCTGGAAGATGACTGCTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAG
1 TATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCTCATCAGGAAG
22896559 GTGGGTTTGG
Statistics
Matches: 966, Mismatches: 121, Indels: 30
0.86 0.11 0.03
Matches are distributed among these distances:
202 2 0.00
203 146 0.15
204 26 0.03
208 35 0.04
209 748 0.77
210 9 0.01
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.38
Consensus pattern (209 bp):
TATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCTCATCAGGAAGAT
AGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTC
ATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCGGATTT
GGTCCACTTCTCTG
Found at i:22895513 original size:257 final size:251
Alignment explanation
Indices: 22895034--22895499 Score: 707
Period size: 257 Copynumber: 1.8 Consensus size: 251
22895024 ATCTTTTGGT
*
22895034 CCACTTCTCTGCATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCA
1 CCACTCCTCTGCATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCA
* * * *
22895099 TTGGTCTATTTCTTTGTATCTCATCCGGAAGACGACCACTTCATTGATTTAATCCACTTCTCTGT
66 TTGGTCTACTTCTTTATATCTCATCAGAAAGACGACCACTTCATTGATTTAATCCACTTCTCTGT
*
22895164 ATCTCATCAGGAAGACAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTTATT
131 ATCTCATCAAGAAGACAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTTATT
22895229 GCTGTGACCCACTTTGCTATATCTCATCAGGAAGATGACCACTTTATTACTTTGAC
196 GCTGTGACCCACTTTGCTATATCTCATCAGGAAGATGACCACTTTATTACTTTGAC
* *
22895285 CCACTCCTCTGTATCTCATCAGGAAGATAGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTC
1 CCACTCCTCTGCATCTCATCAGGAAGAT-GGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTC
* *
22895350 ATTGATTTGGTCTACTTCTTTATATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTT
65 ----A-TTGGTCTACTTCTTTATATCTCATCAGAAAGACGACCACTTCATTGATTTAATCCACTT
* * * * * * *
22895415 CTCTGTATCTCATCAAGAAGGCGGATTTGGTCCAGTTCTCTGTATCTCATTAGGAAGATGATCGC
125 CTCTGTATCTCATCAAGAAGACAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCAC
* *
22895480 TTTATTGCTTTGACTCACTT
190 TTTATTGCTGTGACCCACTT
22895500 CTTTGTATCT
Statistics
Matches: 190, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
251 26 0.14
252 35 0.18
256 1 0.01
257 128 0.67
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (251 bp):
CCACTCCTCTGCATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCA
TTGGTCTACTTCTTTATATCTCATCAGAAAGACGACCACTTCATTGATTTAATCCACTTCTCTGT
ATCTCATCAAGAAGACAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTTATT
GCTGTGACCCACTTTGCTATATCTCATCAGGAAGATGACCACTTTATTACTTTGAC
Found at i:22895707 original size:85 final size:85
Alignment explanation
Indices: 22895560--22895728 Score: 230
Period size: 85 Copynumber: 2.0 Consensus size: 85
22895550 CTTTGCTTCA
* * * * * *
22895560 TGGATTTGGTCTACTTTTCTATATCTCATCAGGAAGATTACCGCTTCATTGCTTTAATCCACTTC
1 TGGATTTGGTCTACTTCTCCATATCTCATCAGAAAGATGACCGCTTCATTACTTTAACCCACTTC
**
22895625 TCTGTATCTCATCAGGAAGG
66 TCTGTATCGAATCAGGAAGG
* * *
22895645 TGGATTTGGTCTACTTCTCCGTATCTCATCAGAAAGATGACCGCTTTATTACTTTGACCCACTTC
1 TGGATTTGGTCTACTTCTCCATATCTCATCAGAAAGATGACCGCTTCATTACTTTAACCCACTTC
*
22895710 TTTGTATCGAATCAGGAAG
66 TCTGTATCGAATCAGGAAG
22895729 ATGGGGTCTG
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.37
Consensus pattern (85 bp):
TGGATTTGGTCTACTTCTCCATATCTCATCAGAAAGATGACCGCTTCATTACTTTAACCCACTTC
TCTGTATCGAATCAGGAAGG
Found at i:22895911 original size:85 final size:85
Alignment explanation
Indices: 22895768--22895930 Score: 218
Period size: 85 Copynumber: 1.9 Consensus size: 85
22895758 CTTCGCTTCA
* * * * * *
22895768 TTGGTCTACTTCTTTGTATCTCATCAGGATGACGACCACTTCATTGATTTAATCCACTTCCCTGT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTCATTGATTTAACCCACTTCCCTAT
*
22895833 ATCTCATTAGGAAGACGGAT
66 ATCTCATCAGGAAGACGGAT
* * * **
22895853 TTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTTATTGCTTTGACCCACTTTTCTAT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTCATTGATTTAACCCACTTCCCTAT
22895918 ATCTCATCAGGAA
66 ATCTCATCAGGAA
22895931 TATGGGAGTT
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
85 66 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (85 bp):
TTGGTCCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTCATTGATTTAACCCACTTCCCTAT
ATCTCATCAGGAAGACGGAT
Found at i:22896079 original size:37 final size:37
Alignment explanation
Indices: 22896024--22896095 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
22896014 ACTTCATTGT
*
22896024 TTTGATCCACTTCTCTGTATTTCATCAGGAAGATGGA
1 TTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGA
* *
22896061 TTTGGTCCACTTTTCTGTATCTCATCAGGAAGATG
1 TTTGATCCACTTCTCTGTATCTCATCAGGAAGATG
22896096 ATCACTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.39
Consensus pattern (37 bp):
TTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGA
Found at i:22896128 original size:85 final size:85
Alignment explanation
Indices: 22895984--22896144 Score: 216
Period size: 85 Copynumber: 1.9 Consensus size: 85
22895974 GACTTGGTTT
** * *
22895984 ACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTGATCCACTTCTCTGTATTTCAT
1 ACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTACTTTGATCCACTCCTCTGTATCTCAT
**
22896049 CAGGAAGATGGATTTGGTCC
66 CAAAAAGATGGATTTGGTCC
* * * *
22896069 ACTTTTCTGTATCTCATCAGGAAGATGATCACTTTATTACTTTGA-CTCACTCCTTTGTATCTCA
1 ACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTACTTTGATC-CACTCCTCTGTATCTCA
22896133 TCAAAAAGATGG
65 TCAAAAAGATGG
22896145 GGGTTTGAAG
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
84 1 0.02
85 64 0.98
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (85 bp):
ACTTCTCTGTATCTCATCAGGAAGATGACCACTTCATTACTTTGATCCACTCCTCTGTATCTCAT
CAAAAAGATGGATTTGGTCC
Found at i:22896209 original size:621 final size:624
Alignment explanation
Indices: 22895237--22896558 Score: 1945
Period size: 621 Copynumber: 2.1 Consensus size: 624
22895227 TTGCTGTGAC
* *
22895237 CCACTT-TGCTATATCTCATCAGGAAGATGACCACTTTATTACTTTGACCCACTCCTCTGTATCT
1 CCACTTCT-CTATATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTCTCTGTATCT
* * *
22895301 CATCAGGAAGATAGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTCTACT
65 CATCAGGAAGATAGGGGTTTAAAGTTTCACTCACATTGAGCTTTACTTCATTGACTTGGTCTACT
* *
22895366 TCTTTATATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAA
130 TCTCTATATCTCATCAGAAAGATGACCACTTCATTGATTTAATCCACTTCTCTGTATCTCATCAA
* * * * *
22895431 GAAGGCGGATTTGGTCCAGTTCTCTGTATCTCATTAGGAAGATGATCGCTTTATTGCTTTGACTC
195 GAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCACTTTATTACTTTGACTC
* *
22895496 ACTTCTTTGTATCTCATCTAAAAGAAGAGGGTTTGAAGTTTCATTCACATTGAGCTTTGCTTCAT
260 ACTCCTTTGTATCTCATCAAAAAGAAGAGGGTTTGAAGTTTCATTCACATTGAGCTTTGCTTCAT
* * * *
22895561 GGATTTGGTCTACTTTTCTATATCTCATCAGGAAGATTACCGCTTCATTGCTTTAATCCACTTCT
325 GGATTTGGTCTACTTCTCTATATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCT
** *
22895626 CTGTATCTCATCAGGAAGGTGGATTTGGTCTACTTCTCCGTATCTCATCAGAAAGATGACCGCTT
390 CTGTATCTCATCAGGAAGGCAGATTTGGTCCACTTCTCCGTATCTCATCAGAAAGATGACCGCTT
*
22895691 TATTACTTTGACCCACTTCTTTGTATCGAATCAGGAAGAT-GGGGTCTGAATTTTCACTCACATT
455 TATTACTTTGACCCACTTCTTTGTATCGAATCAGGAAGATAGGGGTCTGAAGTTTCACTCACATT
* *
22895755 GAGCTTCGCTTC-A-TTGGTCTACTTCTTTGTATCTCATCAGGATGACGACCACTTCATTGATTT
520 GAGCTTCGCTTCTATTTGGTCTACTTCTCTGTATCTCATCAGGAAGACGACCACTTCATTGATTT
* * *
22895818 AATCCACTTCCCTGTATCTCATTAGGAAGACGGATTTGGT
585 AATCCACTTCCCTATATCTCATCAGAAAGACGGATTTGGT
* * * *
22895858 CCACTTCTCTGTATCTCATCAGGAAGAAGACCACTTTATTGCTTTGACCCACTTTTCTATATCTC
1 CCACTTCTCTATATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTCTCTGTATCTC
* *
22895923 ATCAGGAATAT-GGGAGTTTAAAGTTTCACTCACATTGAG-TTTCACTTCATTGACTTGGTTTAC
66 ATCAGGAAGATAGGG-GTTTAAAGTTTCACTCACATTGAGCTTT-ACTTCATTGACTTGGTCTAC
* * * * *
22895986 TTCTCTGTATCTCATCAGGAAGATGACCACTTCATTGTTTTGATCCACTTCTCTGTATTTCATCA
129 TTCTCTATATCTCATCAGAAAGATGACCACTTCATTGATTTAATCCACTTCTCTGTATCTCATCA
* * *
22896051 GGAAGATGGATTTGGTCCACTTTTCTGTATCTCATCAGGAAGATGATCACTTTATTACTTTGACT
194 AGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCACTTTATTACTTTGACT
* * *
22896116 CACTCCTTTGTATCTCATCAAAAAGATGGGGGTTTGAAGTTTCATTCACATTGAGCTTTGCTTTA
259 CACTCCTTTGTATCTCATCAAAAAGAAGAGGGTTTGAAGTTTCATTCACATTGAGCTTTGCTTCA
* * *
22896181 TTGATTTGGTCTACTTCTCTGTATCTCATCAGAAAGATGACTGCTTCATTGATTTAATCCACTTC
324 TGGATTTGGTCTACTTCTCTATATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTC
** * *
22896246 TCTGTATCTCATCAGGAAGGCAGATTTGGTCCACTTCTTTGTATCTCATCAGGAAGATGACCGTT
389 TCTGTATCTCATCAGGAAGGCAGATTTGGTCCACTTCTCCGTATCTCATCAGAAAGATGACCGCT
* * ** *
22896311 TTATTGCTTTGACTCACTTCTTTGTATCTCATCAGGAAGATAGGGGTTTGAAGTTTCACTCACAT
454 TTATTACTTTGACCCACTTCTTTGTATCGAATCAGGAAGATAGGGGTCTGAAGTTTCACTCACAT
* * * *
22896376 TGAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTTATCAGGAAGATGACCGCTTCATTG
519 TGAGCTTCGCTTC--T-ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGACGACCACTTCATTG
* **
22896441 ATTTAATCCACTTCTCTATATCTCATCAGAAAGGTGGATTTGGT
581 ATTTAATCCACTTCCCTATATCTCATCAGAAAGACGGATTTGGT
* **
22896485 CCACTTCTCTATATCTCATCTGGAAGATGACTGCTTTATTGCTTTGACCCACTTCTCTGTATCTC
1 CCACTTCTCTATATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTCTCTGTATCTC
*
22896550 ATCAAGAAG
66 ATCAGGAAG
22896559 GTGGGTTTGG
Statistics
Matches: 620, Mismatches: 72, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
620 6 0.01
621 435 0.70
622 34 0.05
626 1 0.00
627 144 0.23
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (624 bp):
CCACTTCTCTATATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTCTCTGTATCTC
ATCAGGAAGATAGGGGTTTAAAGTTTCACTCACATTGAGCTTTACTTCATTGACTTGGTCTACTT
CTCTATATCTCATCAGAAAGATGACCACTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAG
AAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCACTTTATTACTTTGACTCA
CTCCTTTGTATCTCATCAAAAAGAAGAGGGTTTGAAGTTTCATTCACATTGAGCTTTGCTTCATG
GATTTGGTCTACTTCTCTATATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCTC
TGTATCTCATCAGGAAGGCAGATTTGGTCCACTTCTCCGTATCTCATCAGAAAGATGACCGCTTT
ATTACTTTGACCCACTTCTTTGTATCGAATCAGGAAGATAGGGGTCTGAAGTTTCACTCACATTG
AGCTTCGCTTCTATTTGGTCTACTTCTCTGTATCTCATCAGGAAGACGACCACTTCATTGATTTA
ATCCACTTCCCTATATCTCATCAGAAAGACGGATTTGGT
Found at i:22896329 original size:85 final size:85
Alignment explanation
Indices: 22896183--22896349 Score: 237
Period size: 85 Copynumber: 2.0 Consensus size: 85
22896173 TTGCTTTATT
* *
22896183 GATTTGGTCTACTTCTCTGTATCTCATCAGAAAGATGACTGCTTCATTGATTTAATCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCTC
22896248 TGTATCTCATCAGGAAGGCA
66 TGTATCTCATCAGGAAGGCA
* * * * * *
22896268 GATTTGGTCCACTTCTTTGTATCTCATCAGGAAGATGACCGTTTTATTGCTTTGA-CTCACTTCT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTCATTGATTTAATC-CACTTCT
*
22896332 TTGTATCTCATCAGGAAG
65 CTGTATCTCATCAGGAAG
22896350 ATAGGGGTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
84 1 0.01
85 71 0.99
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTCATTGATTTAATCCACTTCTC
TGTATCTCATCAGGAAGGCA
Found at i:22896537 original size:85 final size:86
Alignment explanation
Indices: 22896392--22896643 Score: 359
Period size: 85 Copynumber: 3.0 Consensus size: 86
22896382 TTGCTTCATT
* * * * *
22896392 GATTTGGTCTACTTCTCTGTATCTTATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGATTTGACCCACTTCTC
*
22896457 TATATCTCATCAGA-AAGGTG
66 TGTATCTCATCAGAGAAGGTG
* * * *
22896477 GATTTGGTCCACTTCTCTATATCTCATCTGGAAGATGACTGCTTTATTGCTTTGACCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGATTTGACCCACTTCTC
22896542 TGTATCTCATCA-AGAAGGTG
66 TGTATCTCATCAGAGAAGGTG
* *
22896562 GGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATT-ATTTTGACCCACTCCT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGA-TTTGACCCACTTCT
22896626 CTGTATCTCATCAG-GAAG
65 CTGTATCTCATCAGAGAAG
22896644 ATGGGGTTCG
Statistics
Matches: 148, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
84 1 0.01
85 147 0.99
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.37
Consensus pattern (86 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGATTTGACCCACTTCTC
TGTATCTCATCAGAGAAGGTG
Found at i:22896779 original size:293 final size:293
Alignment explanation
Indices: 22896183--22896886 Score: 1033
Period size: 293 Copynumber: 2.4 Consensus size: 293
22896173 TTGCTTTATT
* * * * * *
22896183 GATTTGGTCTACTTCTCTGTATCTCATCAGAAAGATGACTGCTTCATTGATTTAATCCACTTCTC
1 GATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACTGCTT-ATTGCTTTGACCCACTTCTC
* ** * * *
22896248 TGTATCTCATCAGGAAGGCAGATTTGGTCCACTTCTTTGTATCTCATCAGGAAGATGACCGTTTT
65 TGTATCTCATCAAGAAGGTGGGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* * * * *
22896313 ATTGCTTTGACTCACTTCTTTGTATCTCATCAGGAAGATAGGGGTTTGAAGTTTCACTCACATTG
130 ATTACTTTGACCCACTCCTCTGTATCTCATCAGGAAGATAGGGGTTCGAAGTTTCACTCACATTG
* * * *
22896378 AGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTTATCAGGAAGATGACCGCTTCATTGAT
195 AGCTTTGCTTCACTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACTTCATTGAT
* *
22896443 TTAATCCACTTCTCTATATCTCATCAGAAAGGTG
260 TTAATCCACTTCTCTACATCTCATCAGAAAGGTA
*
22896477 GATTTGGTCCACTTCTCTATATCTCATCTGGAAGATGACTGCTTTATTGCTTTGACCCACTTCTC
1 GATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACTGC-TTATTGCTTTGACCCACTTCTC
22896542 TGTATCTCATCAAGAAGGTGGGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
65 TGTATCTCATCAAGAAGGTGGGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
*
22896607 ATTATTTTGACCCACTCCTCTGTATCTCATCAGGAAGAT-GGGGTTCGAAGTTTCACTCACATTG
130 ATTACTTTGACCCACTCCTCTGTATCTCATCAGGAAGATAGGGGTTCGAAGTTTCACTCACATTG
22896671 AGCTTTGCTTCACTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACTTCATTGAT
195 AGCTTTGCTTCACTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACTTCATTGAT
*
22896736 TTAATCCACTTCTCTGCATCTCATCA-AGAAGGTA
260 TTAATCCACTTCTCTACATCTCATCAGA-AAGGTA
* * * *
22896770 GATTTGGTCCACTTCTTTATACCTCATCAGGAAGATGAC--C--GTTGCTTTGACCCACTTTTCT
1 GATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACTGCTTATTGCTTTGACCCACTTCTCT
* * * *
22896831 GTGTATTATCAAGAATGTGGGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATG
66 GTATCTCATCAAGAAGGTGGGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATG
22896887 GGTGGTTTGA
Statistics
Matches: 373, Mismatches: 35, Indels: 10
0.89 0.08 0.02
Matches are distributed among these distances:
288 71 0.19
291 1 0.00
292 1 0.00
293 150 0.40
294 148 0.40
295 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (293 bp):
GATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACTGCTTATTGCTTTGACCCACTTCTCT
GTATCTCATCAAGAAGGTGGGTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTA
TTACTTTGACCCACTCCTCTGTATCTCATCAGGAAGATAGGGGTTCGAAGTTTCACTCACATTGA
GCTTTGCTTCACTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACTTCATTGATT
TAATCCACTTCTCTACATCTCATCAGAAAGGTA
Done.