Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 79 of 132
Found at i:23229036 original size:25 final size:25
Alignment explanation
Indices: 23228988--23229036 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
23228978 AAACTTATCC
* *
23228988 TCGAAATCAATATAGAGACCAACAA
1 TCGAAATCAATATAGAAACAAACAA
23229013 TCGAAATCAATATAGAAACAAACA
1 TCGAAATCAATATAGAAACAAACA
23229037 GATAGCACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.55, C:0.18, G:0.10, T:0.16
Consensus pattern (25 bp):
TCGAAATCAATATAGAAACAAACAA
Found at i:23230401 original size:31 final size:30
Alignment explanation
Indices: 23230382--23230563 Score: 112
Period size: 29 Copynumber: 6.2 Consensus size: 30
23230372 ACACTTTTCC
*
23230382 AAAATCACATTTTGAACCCCAAACTTCTCA
1 AAAATAACATTTTGAACCCCAAACTTCTCA
*
23230412 AAAATAACATTTTTG--CCCTCAAAATTCTCA
1 AAAATAACA-TTTTGAACCC-CAAACTTCTCA
* * * *
23230442 AAAATTACATTTTTATCCCTAAACTTCTCA
1 AAAATAACATTTTGAACCCCAAACTTCTCA
* *
23230472 AAAATTACATTTTTG--CCCCTTAACTTC-CA
1 AAAATAACA-TTTTGAACCCC-AAACTTCTCA
* * *
23230501 AAAATTACATGTTT--TCCCTCGAACTTC-CA
1 AAAATAACAT-TTTGAACCC-CAAACTTCTCA
* * * *
23230530 AAAATCACATTTTTACCCCCGAACTTC-CA
1 AAAATAACATTTTGAACCCCAAACTTCTCA
23230559 AAAAT
1 AAAAT
23230564 CATGTTTTTG
Statistics
Matches: 129, Mismatches: 12, Indels: 23
0.79 0.07 0.14
Matches are distributed among these distances:
28 4 0.03
29 59 0.46
30 54 0.42
31 12 0.09
ACGTcount: A:0.37, C:0.27, G:0.03, T:0.33
Consensus pattern (30 bp):
AAAATAACATTTTGAACCCCAAACTTCTCA
Found at i:23230475 original size:60 final size:59
Alignment explanation
Indices: 23230378--23230563 Score: 191
Period size: 60 Copynumber: 3.2 Consensus size: 59
23230368 CCCTACACTT
* * * *
23230378 TTCC-AAAATCACATTTTGAACCCCAAACTTCTCAAAAATAACATTTTTG-CCCTCAAAA
1 TTCCAAAAATTACATTTTTATCCCTAAACTTCTCAAAAATAACATTTTTGCCCCT-AAAA
* * *
23230436 TTCTCAAAAATTACATTTTTATCCCTAAACTTCTCAAAAATTACATTTTTGCCCCTTAAC
1 TTC-CAAAAATTACATTTTTATCCCTAAACTTCTCAAAAATAACATTTTTGCCCCTAAAA
* * * * ** *
23230496 TTCCAAAAATTACATGTTT-TCCCTCGAACTTC-CAAAAATCACATTTTTACCCCCGAAC
1 TTCCAAAAATTACATTTTTATCCCT-AAACTTCTCAAAAATAACATTTTTGCCCCTAAAA
23230554 TTCCAAAAAT
1 TTCCAAAAAT
23230564 CATGTTTTTG
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
58 40 0.36
59 22 0.20
60 45 0.41
61 4 0.04
ACGTcount: A:0.36, C:0.27, G:0.03, T:0.33
Consensus pattern (59 bp):
TTCCAAAAATTACATTTTTATCCCTAAACTTCTCAAAAATAACATTTTTGCCCCTAAAA
Found at i:23230502 original size:29 final size:29
Alignment explanation
Indices: 23230368--23230658 Score: 170
Period size: 30 Copynumber: 10.0 Consensus size: 29
23230358 TCATATTAAC
* * * * *
23230368 CCCTACACTTTTCCAAAATCACATTTTGAA
1 CCCTAAACTTCTCAAAAATTACATTTT-TA
* * *
23230398 CCCCAAACTTCTCAAAAATAACATTTTTG
1 CCCTAAACTTCTCAAAAATTACATTTTTA
*
23230427 CCCTCAAAATTCTCAAAAATTACATTTTTA
1 CCCT-AAACTTCTCAAAAATTACATTTTTA
*
23230457 TCCCTAAACTTCTCAAAAATTACATTTTTGC
1 -CCCTAAACTTCTCAAAAATTACATTTTT-A
*
23230488 CCCTTAACTTC-CAAAAATTACATGTTTT-
1 CCCTAAACTTCTCAAAAATTACAT-TTTTA
* *
23230516 CCCTCGAACTTC-CAAAAATCACATTTTTA
1 CCCT-AAACTTCTCAAAAATTACATTTTTA
** *
23230545 CCCCCGAACTTC-CAAAAA-T-CATGTTTTT
1 -CCCTAAACTTCTCAAAAATTACAT-TTTTA
* * ** *
23230573 GCCTCAAA-TTTTCCTAAATGACATTTTTA
1 CCCT-AAACTTCTCAAAAATTACATTTTTA
* * *
23230602 CCCCTAAAACTT-TCCAAAATTGCATTTTAA
1 -CCCT-AAACTTCTCAAAAATTACATTTTTA
* *
23230632 CCCCAAAC-TCTCCAAAACTT-CATTTTT
1 CCCTAAACTTCT-CAAAAATTACATTTTT
23230659 CGACCCTTTT
Statistics
Matches: 208, Mismatches: 37, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
27 8 0.04
28 29 0.14
29 58 0.28
30 107 0.51
31 6 0.03
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.35
Consensus pattern (29 bp):
CCCTAAACTTCTCAAAAATTACATTTTTA
Found at i:23230541 original size:58 final size:58
Alignment explanation
Indices: 23230402--23230620 Score: 196
Period size: 58 Copynumber: 3.7 Consensus size: 58
23230392 TTTGAACCCC
* *
23230402 AAACTTCTCAAAAATAACATTTTTG-CCCTCAAAATTCTCAAAAATTACATTTTTATCCCT
1 AAACTTCTCAAAAATAACATTTTTGCCCCT-AAACTTC-CAAAAATTACATGTTT-TCCCT
* *
23230462 AAACTTCTCAAAAATTACATTTTTGCCCCTTAACTTCCAAAAATTACATGTTTTCCCT
1 AAACTTCTCAAAAATAACATTTTTGCCCCTAAACTTCCAAAAATTACATGTTTTCCCT
* * * ** *
23230520 CGAACTTC-CAAAAATCACATTTTTACCCCCGAACTTCCAAAAA-T-CATGTTTTTGCCT
1 -AAACTTCTCAAAAATAACATTTTTGCCCCTAAACTTCCAAAAATTACATG-TTTTCCCT
* ** * *
23230577 CAAA-TTTTCCTAAATGACATTTTTACCCCTAAAACTTTCCAAAA
1 -AAACTTCTCAAAAATAACATTTTTGCCCCT-AAAC-TTCCAAAA
23230621 TTGCATTTTA
Statistics
Matches: 136, Mismatches: 17, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
56 6 0.04
57 29 0.21
58 39 0.29
59 29 0.21
60 29 0.21
61 4 0.03
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.35
Consensus pattern (58 bp):
AAACTTCTCAAAAATAACATTTTTGCCCCTAAACTTCCAAAAATTACATGTTTTCCCT
Found at i:23230647 original size:28 final size:29
Alignment explanation
Indices: 23230594--23230657 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
23230584 TCCTAAATGA
* *
23230594 CATTTTTACCCCTAAAACTTTCCAAAA-TT
1 CATTTTAACCCC-AAAACTCTCCAAAACTT
23230623 GCATTTTAACCCC-AAACTCTCCAAAACTT
1 -CATTTTAACCCCAAAACTCTCCAAAACTT
23230652 CATTTT
1 CATTTT
23230658 TCGACCCTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 18 0.58
29 2 0.06
30 11 0.35
ACGTcount: A:0.33, C:0.30, G:0.02, T:0.36
Consensus pattern (29 bp):
CATTTTAACCCCAAAACTCTCCAAAACTT
Found at i:23231084 original size:97 final size:97
Alignment explanation
Indices: 23230918--23231111 Score: 298
Period size: 97 Copynumber: 2.0 Consensus size: 97
23230908 AAAATATTTA
* * *
23230918 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAATTCCTGCCTTAACTTACTAGGCACGAT
1 AAATCGAGGCAATATTCCTTTATCTCGGGTTTTGAAAATTCCTGCCATAACTTACTAGGCACGAA
*
23230983 TTTTCTTCAAATCAGGATAATCGAATACCCTT
66 TTTTCTTCAAACCAGGATAATCGAATACCCTT
* * ** *
23231015 AAATCGAGGCAATATTTCTTTATCTCGGGTTTTGAATATTTGTGCCATAACTTACTAGGCTCGAA
1 AAATCGAGGCAATATTCCTTTATCTCGGGTTTTGAAAATTCCTGCCATAACTTACTAGGCACGAA
*
23231080 TTTTCTTCAAACCGGGATAATCGAATACCCTT
66 TTTTCTTCAAACCAGGATAATCGAATACCCTT
23231112 TTCAAGGTTT
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
97 87 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.36
Consensus pattern (97 bp):
AAATCGAGGCAATATTCCTTTATCTCGGGTTTTGAAAATTCCTGCCATAACTTACTAGGCACGAA
TTTTCTTCAAACCAGGATAATCGAATACCCTT
Found at i:23241830 original size:39 final size:40
Alignment explanation
Indices: 23241787--23242344 Score: 276
Period size: 39 Copynumber: 14.3 Consensus size: 40
23241777 TGAAGATTCG
* * *
23241787 ATCTCTTACCTCGAGCCTAGGGCAGGTCACCATCAGTC-A
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAA
* * * * * *
23241826 ATCTCTTACCCCGAGCCTGAGGCGGATTA-CAGCCATTC-G
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCA-TCAGTCAA
* *
23241865 ATCTCTTACCCCGAGCTTGGGGC--ATCACCATTAG-CAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAA
* * *
23241902 ATCTCTTACCCCGAGCCAGGGGCAGATAACCATCA-ACAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAA
* * * *
23241941 ATCTCTTACCCCGAGCATGGGGCAGATTGCAGC-T-ACTC-G
1 ATCTCTTACCCCGAGCCTGGGGCAGA-T-CACCATCAGTCAA
** * *
23241980 ATCTCTTACTTCGAGCCTTGGGCAGATCACCATTAG-CAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAA
* ** * * * *
23242019 ATCTCTTACCTCGAGCCTGGGGCAGATTGCAACCATTC-G
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAA
** * * * *
23242058 ATCTCTTACCTTGAGCTTGAGGCAAATCATCATCAG-CAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAA
* * * * * ** **
23242097 ATCTCTTACCTCGATCATGGGGCAGATTA-TAGT-TTTCTG
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCA-TCAGTCAA
*
23242136 ATCTCTTACCCCGAGCCAGGGGCAGATCACCATCAG-CAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAA
* * * * * * * *
23242175 ATCTCTTACCCCGATCATAGGGCAAATTA-CAGCTACTC-G
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATC-AGTCAA
* * * * *
23242214 ATCTCTTACCCCGAGCTTAGGGTAGATCACCATCTG-CCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAA
* * * ** * * * *
23242253 ATCTCTTACCCTGAGCTTGGGGAAGATTGCAACCATTC-G
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAA
* * * * *
23242292 ATCTTTTACCTCGAGCCTGGGGCAAATCATCATCAG-CCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAA
23242331 ATCTCTTACCCCGA
1 ATCTCTTACCCCGA
23242345 TCATGGGGTA
Statistics
Matches: 378, Mismatches: 117, Indels: 48
0.70 0.22 0.09
Matches are distributed among these distances:
36 1 0.00
37 28 0.07
38 14 0.04
39 323 0.85
40 10 0.03
41 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (40 bp):
ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGTCAA
Found at i:23242006 original size:78 final size:78
Alignment explanation
Indices: 23241902--23242362 Score: 492
Period size: 78 Copynumber: 5.9 Consensus size: 78
23241892 CCATTAGCAA
* * *
23241902 ATCTCTTACCCCGAGCCAGGGGCAGATAACCATCAACAAATCTCTTACCCCGAGCATGGGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
*
23241967 TTGCAGCTACTCG
66 TTGCAGCTATTCG
** * * * *
23241980 ATCTCTTACTTCGAGCCTTGGGCAGATCACCATTAGCAAATCTCTTACCTCGAGCCTGGGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* *
23242045 TTGCAACCATTCG
66 TTGCAGCTATTCG
** * * * * * *
23242058 ATCTCTTACCTTGAGCTTGAGGCAAATCATCATCAGCAAATCTCTTACCTCGATCATGGGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
** *
23242123 TTATAG-TTTTCTG
66 TTGCAGCTATTC-G
* * * *
23242136 ATCTCTTACCCCGAGCCAGGGGCAGATCACCATCAGCAAATCTCTTACCCCGATCATAGGGCAAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* *
23242201 TTACAGCTACTCG
66 TTGCAGCTATTCG
* * * * * * * *
23242214 ATCTCTTACCCCGAGCTTAGGGTAGATCACCATCTGCCAATCTCTTACCCTGAGCTTGGGGAAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* *
23242279 TTGCAACCATTCG
66 TTGCAGCTATTCG
* * * * * * *
23242292 ATCTTTTACCTCGAGCCTGGGGCAAATCATCATCAGCCAATCTCTTACCCCGATCATGGGGTAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
23242357 TTGCAG
66 TTGCAG
23242363 TTATCCAAAA
Statistics
Matches: 312, Mismatches: 69, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
77 3 0.01
78 306 0.98
79 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (78 bp):
ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
TTGCAGCTATTCG
Found at i:23242790 original size:11 final size:11
Alignment explanation
Indices: 23242772--23242865 Score: 59
Period size: 11 Copynumber: 8.5 Consensus size: 11
23242762 AACTAAACCC
23242772 ATTT-TTTTAA
1 ATTTATTTTAA
23242782 ATTTATTTTAA
1 ATTTATTTTAA
* * *
23242793 GGTTAAATTT-A
1 -ATTTATTTTAA
* *
23242804 TTTTAAGTTTAA
1 ATTT-ATTTTAA
*
23242816 ATTTGTTTTAA
1 ATTTATTTTAA
*
23242827 ATTTAAATTT-A
1 ATTT-ATTTTAA
*
23242838 ATTTAAGTTTAA
1 ATTT-ATTTTAA
23242850 ATTTATTTTAA
1 ATTTATTTTAA
23242861 ATTTA
1 ATTTA
23242866 AAATTATTTT
Statistics
Matches: 65, Mismatches: 13, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
10 6 0.09
11 41 0.63
12 18 0.28
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (11 bp):
ATTTATTTTAA
Found at i:23242800 original size:17 final size:17
Alignment explanation
Indices: 23242777--23242886 Score: 157
Period size: 17 Copynumber: 6.5 Consensus size: 17
23242767 AACCCATTTT
23242777 TTTAAATTTATTTTAAG
1 TTTAAATTTATTTTAAG
*
23242794 GTTAAATTTATTTTAAG
1 TTTAAATTTATTTTAAG
* *
23242811 TTTAAATTTGTTTTAAA
1 TTTAAATTTATTTTAAG
*
23242828 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAG
*
23242845 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAG
* *
23242862 TTTAAAATTATTTTAAA
1 TTTAAATTTATTTTAAG
23242879 TTTAAATT
1 TTTAAATT
23242887 GATAATATCC
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 82 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (17 bp):
TTTAAATTTATTTTAAG
Found at i:23242814 original size:6 final size:6
Alignment explanation
Indices: 23242777--23242886 Score: 79
Period size: 6 Copynumber: 19.3 Consensus size: 6
23242767 AACCCATTTT
* * * * * **
23242777 TTTAAA TTT-AT TTTAAG GTTAAA TTT-AT TTTAAG TTTAAA TTT-GT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
23242822 TTTAAA TTTAAA TTT-AA TTTAAG TTTAAA TTT-AT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
23242868 ATT-AT TTTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TT
23242887 GATAATATCC
Statistics
Matches: 78, Mismatches: 20, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
5 23 0.29
6 55 0.71
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:23242837 original size:51 final size:51
Alignment explanation
Indices: 23242777--23242886 Score: 175
Period size: 51 Copynumber: 2.2 Consensus size: 51
23242767 AACCCATTTT
* * * *
23242777 TTTAAATTTATTTTAAGGTTAAATTTATTTTAAGTTTAAATTTGTTTTAAA
1 TTTAAATTTAATTTAAGGTTAAATTTATTTTAAATTTAAAATTATTTTAAA
*
23242828 TTTAAATTTAATTTAAGTTTAAATTTATTTTAAATTTAAAATTATTTTAAA
1 TTTAAATTTAATTTAAGGTTAAATTTATTTTAAATTTAAAATTATTTTAAA
23242879 TTTAAATT
1 TTTAAATT
23242887 GATAATATCC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (51 bp):
TTTAAATTTAATTTAAGGTTAAATTTATTTTAAATTTAAAATTATTTTAAA
Found at i:23242876 original size:28 final size:28
Alignment explanation
Indices: 23242828--23242882 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
23242818 TTGTTTTAAA
*
23242828 TTTAAATTTAATTTAAGTTTAAATTTAT
1 TTTAAATTTAAATTAAGTTTAAATTTAT
*
23242856 TTTAAATTTAAAATT-ATTTTAAATTTA
1 TTTAAATTT-AAATTAAGTTTAAATTTA
23242883 AATTGATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 20 0.83
29 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (28 bp):
TTTAAATTTAAATTAAGTTTAAATTTAT
Found at i:23243329 original size:25 final size:25
Alignment explanation
Indices: 23243281--23243329 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
23243271 AAACTTATCC
* *
23243281 TCAAAATCAATACAGAGACCAACAA
1 TCAAAATCAATACAGAAACAAACAA
23243306 TCAAAATCAATACAGAAACAAACA
1 TCAAAATCAATACAGAAACAAACA
23243330 GATAGCACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.59, C:0.22, G:0.06, T:0.12
Consensus pattern (25 bp):
TCAAAATCAATACAGAAACAAACAA
Found at i:23243840 original size:3 final size:3
Alignment explanation
Indices: 23243832--23243858 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
23243822 AGTTTTTATA
23243832 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
23243859 CGATCTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:23244495 original size:30 final size:29
Alignment explanation
Indices: 23244367--23244526 Score: 116
Period size: 29 Copynumber: 5.5 Consensus size: 29
23244357 GTATTTTTTT
* * *
23244367 AAAAATTACATGTTTACCCTTGAACTTCC
1 AAAAATTACATTTTTACCCCTAAACTTCC
* *
23244396 AAAAATCACATTTTTACCCCTGAACTTCC
1 AAAAATTACATTTTTACCCCTAAACTTCC
* *
23244425 AAAAA--ACAAGTTTTTATCCC-AAATTTTCC
1 AAAAATTAC-A-TTTTTACCCCTAAA-CTTCC
* *
23244454 TAAAATGACATTTTTACCCCTAAAACTTTCC
1 AAAAATTACATTTTTACCCCT-AAAC-TTCC
*
23244485 -AAAATTACATTTTAACCCC-AAACTCTCC
1 AAAAATTACATTTTTACCCCTAAACT-TCC
* *
23244513 GAAACTT-CATTTTT
1 AAAAATTACATTTTT
23244527 TGACCCCCTT
Statistics
Matches: 108, Mismatches: 13, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
27 3 0.03
28 16 0.15
29 62 0.57
30 18 0.17
31 9 0.08
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (29 bp):
AAAAATTACATTTTTACCCCTAAACTTCC
Found at i:23244947 original size:97 final size:97
Alignment explanation
Indices: 23244779--23244972 Score: 273
Period size: 97 Copynumber: 2.0 Consensus size: 97
23244769 AAAATATTTA
* * * *
23244779 AAATCGAGGTAATATTCCTCTATTTCGAGTTTTGAAAATTCGTGCCTTAACTTACTAGGGGCGAT
1 AAATCGAGGCAATATTCCTCTATCTCGAGTTTTGAAAATTCGTGCCTTAACTTACTAGGCGCGAC
* *
23244844 TTTTCTTCAAACCGGGATAATCGAATACCCTT
66 TGTTCTTCAAACCGAGATAATCGAATACCCTT
* * * *
23244876 AAATCGAGGCAATATTTCTTTATCTCGAGTTTTGGAAATTTGTGCCTTAACTTA-TAAGGCGCGA
1 AAATCGAGGCAATATTCCTCTATCTCGAGTTTTGAAAATTCGTGCCTTAACTTACT-AGGCGCGA
*
23244940 CTGTTCTTCAAATCGAGATAATCGAATACCCTT
65 CTGTTCTTCAAACCGAGATAATCGAATACCCTT
23244973 TTTCAAGGTT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 1 0.01
97 84 0.99
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (97 bp):
AAATCGAGGCAATATTCCTCTATCTCGAGTTTTGAAAATTCGTGCCTTAACTTACTAGGCGCGAC
TGTTCTTCAAACCGAGATAATCGAATACCCTT
Found at i:23254249 original size:17 final size:17
Alignment explanation
Indices: 23254220--23254252 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
23254210 CAACTTTGCT
23254220 TTTATTTTCTATTTTAG
1 TTTATTTTCTATTTTAG
23254237 TTTATCTTT-TATTTTA
1 TTTAT-TTTCTATTTTA
23254253 TGCTTTCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTATTTTCTATTTTAG
Found at i:23257668 original size:19 final size:19
Alignment explanation
Indices: 23257633--23257669 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23257623 GTGAATTTTA
* *
23257633 ATTTATTTTTAATACTTGG
1 ATTTATTTTAAAGACTTGG
23257652 ATTTATTTTAAAGACTTG
1 ATTTATTTTAAAGACTTG
23257670 TAATTTTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.54
Consensus pattern (19 bp):
ATTTATTTTAAAGACTTGG
Found at i:23265930 original size:22 final size:23
Alignment explanation
Indices: 23265887--23265935 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
23265877 CCAAAGAATA
*
23265887 AAATTAACCCAATTTAAATAAT-
1 AAATTAACCCAAATTAAATAATG
*
23265909 AAATTGAACCCAAATT-ATTAATG
1 AAATT-AACCCAAATTAAATAATG
23265932 AAAT
1 AAAT
23265936 ATTTTATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.53, C:0.12, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATTAACCCAAATTAAATAATG
Found at i:23266653 original size:23 final size:21
Alignment explanation
Indices: 23266605--23266647 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
23266595 AAATAATGAA
23266605 AAAAACAAAAAGAAAATGAGT
1 AAAAACAAAAAGAAAATGAGT
*
23266626 AAAAACACAAAAGGAAA-GAGT
1 AAAAACA-AAAAGAAAATGAGT
23266647 A
1 A
23266648 GGAAAAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.70, C:0.07, G:0.16, T:0.07
Consensus pattern (21 bp):
AAAAACAAAAAGAAAATGAGT
Found at i:23269967 original size:319 final size:319
Alignment explanation
Indices: 23269388--23270025 Score: 1213
Period size: 319 Copynumber: 2.0 Consensus size: 319
23269378 GACATACATT
23269388 AGGGCACAACATCCTTAAATGTTATTTTATTTCGAATCAATCGAAAGGAAAAGTTATGTCTAGAA
1 AGGGCACAACATCCTTAAATGTTATTTTATTTCGAATCAATCGAAAGGAAAAGTTATGTCTAGAA
*
23269453 CGTTAGGGCACAACATCTCAAATCTTCGAAAATAAAAATATTTATTAACCAAACCTTATATATTT
66 CGTTAGGGCACAACATCACAAATCTTCGAAAATAAAAATATTTATTAACCAAACCTTATATATTT
*
23269518 TTATTTTTATTAGGATATTCAATTACATTGGTTCGAAGAAAAAACCATGCCTAGTATGTTAGGGC
131 TTATTTTTATTAGGATATTCAATTACATTGGTTCGAAGAAAAAACCATACCTAGTATGTTAGGGC
* * *
23269583 ACAATTTCTTGAATCCTCTAAATAAAGAACATTGCCTCGGTTTAAAAAATTGCTTATACGTTACA
196 ACAATTTCTTGAATCCCCTAAATAAAGAACATTACCTCGATTTAAAAAATTGCTTATACGTTACA
*
23269648 TAAAATTGAAAATGTCATGTGATTTATTTGTTTGAATATTATACAAAAATGAATGAACA
261 TAAAATTGAAAATGTCATGTGATTTATTTGTTTGAATATTATACAAAAATGAATAAACA
23269707 AGGGCACAACATCCTTAAATGTTATTTTATTTCGAATCAATCGAAAGGAAAAGTTATGTCTAGAA
1 AGGGCACAACATCCTTAAATGTTATTTTATTTCGAATCAATCGAAAGGAAAAGTTATGTCTAGAA
*
23269772 CGTTAGGGCACAACATCACAAATCTTTGAAAATAAAAATATTTATTAACCAAACCTTATATATTT
66 CGTTAGGGCACAACATCACAAATCTTCGAAAATAAAAATATTTATTAACCAAACCTTATATATTT
23269837 TTATTTTTATTAGGATATTCAATTACATTGGTTCGAAGAAAAAACCATACCTAGTATGTTAGGGC
131 TTATTTTTATTAGGATATTCAATTACATTGGTTCGAAGAAAAAACCATACCTAGTATGTTAGGGC
23269902 ACAATTTCTTGAATCCCCTAAATAAAGAACATTACCTCGATTTAAAAAATTGCTTATACGTTACA
196 ACAATTTCTTGAATCCCCTAAATAAAGAACATTACCTCGATTTAAAAAATTGCTTATACGTTACA
23269967 TAAAATTGAAAATGTCATGTGATTTATTTGTTTGAATATTATACAAAAATGAATAAACA
261 TAAAATTGAAAATGTCATGTGATTTATTTGTTTGAATATTATACAAAAATGAATAAACA
23270026 TGTGTAGGCA
Statistics
Matches: 312, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
319 312 1.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (319 bp):
AGGGCACAACATCCTTAAATGTTATTTTATTTCGAATCAATCGAAAGGAAAAGTTATGTCTAGAA
CGTTAGGGCACAACATCACAAATCTTCGAAAATAAAAATATTTATTAACCAAACCTTATATATTT
TTATTTTTATTAGGATATTCAATTACATTGGTTCGAAGAAAAAACCATACCTAGTATGTTAGGGC
ACAATTTCTTGAATCCCCTAAATAAAGAACATTACCTCGATTTAAAAAATTGCTTATACGTTACA
TAAAATTGAAAATGTCATGTGATTTATTTGTTTGAATATTATACAAAAATGAATAAACA
Found at i:23270402 original size:23 final size:25
Alignment explanation
Indices: 23270347--23270405 Score: 74
Period size: 23 Copynumber: 2.6 Consensus size: 25
23270337 ATACTAAAGC
23270347 AAAATA-AA-AAA-AAATAAATGAT
1 AAAATACAATAAATAAATAAATGAT
*
23270369 AAAATAGAATAAATAAATAAATG-T
1 AAAATACAATAAATAAATAAATGAT
23270393 -AAATACAATAAAT
1 AAAATACAATAAAT
23270406 GCAATACAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
22 6 0.18
23 14 0.42
24 4 0.12
25 9 0.27
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (25 bp):
AAAATACAATAAATAAATAAATGAT
Found at i:23270404 original size:15 final size:15
Alignment explanation
Indices: 23270378--23270438 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 15
23270368 TAAAATAGAA
23270378 TAAATA-AATAAATG
1 TAAATACAATAAATG
23270392 TAAATACAATAAATG
1 TAAATACAATAAATG
*
23270407 -CAATACAAATAATAATG
1 TAAATAC-AAT-A-AATG
*
23270424 TAAAATAAAATAAAT
1 T-AAATACAATAAAT
23270439 AATAATATGT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
14 11 0.29
15 11 0.29
16 4 0.11
17 5 0.13
18 3 0.08
19 4 0.11
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (15 bp):
TAAATACAATAAATG
Found at i:23270473 original size:56 final size:55
Alignment explanation
Indices: 23270348--23270502 Score: 138
Period size: 56 Copynumber: 2.8 Consensus size: 55
23270338 TACTAAAGCA
* * *
23270348 AAATAAAAAAAAAT-AAATGATAAAATAGAATAAATAAATAAATGTAAATACAAT
1 AAATAAAATAAAATAAAATGATAAAATAAAATAAATAAATAAATGTAAATACAAC
** * *
23270402 AAATGCAATACAAATAATAATG-TAAAATAAAATAAAT-AATAATATGTATATACTAC
1 AAATAAAATA-AAATAA-AATGATAAAATAAAATAAATAAATAA-ATGTAAATACAAC
* * *
23270458 ACAATAAAATAAAATAAACA-AAAATAAATAGAATAAATAAATAAA
1 A-AATAAAATAAAATAAA-ATGATA-AAATAAAATAAATAAATAAA
23270503 AACAATGAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
54 7 0.09
55 10 0.12
56 34 0.43
57 24 0.30
58 5 0.06
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (55 bp):
AAATAAAATAAAATAAAATGATAAAATAAAATAAATAAATAAATGTAAATACAAC
Found at i:23270545 original size:8 final size:7
Alignment explanation
Indices: 23270515--23270579 Score: 53
Period size: 8 Copynumber: 8.7 Consensus size: 7
23270505 CAATGAATTG
23270515 AAAATAA
1 AAAATAA
23270522 AAAATGCTAA
1 AAAA---TAA
23270532 AAAAT--
1 AAAATAA
23270537 AAAATAA
1 AAAATAA
23270544 TAAAATAA
1 -AAAATAA
*
23270552 ATAAGTAA
1 A-AAATAA
23270560 AAAATAA
1 AAAATAA
23270567 AAAAGTAA
1 AAAA-TAA
23270575 AAAAT
1 AAAAT
23270580 TATGGAATGG
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
5 5 0.10
7 16 0.33
8 20 0.42
10 7 0.15
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (7 bp):
AAAATAA
Found at i:23270563 original size:15 final size:15
Alignment explanation
Indices: 23270515--23270579 Score: 73
Period size: 15 Copynumber: 4.3 Consensus size: 15
23270505 CAATGAATTG
23270515 AAAATAAAAAATGCTAA
1 AAAATAAAAAA-G-TAA
23270532 AAAAT--AAAA-TAA
1 AAAATAAAAAAGTAA
*
23270544 TAAAATAAATAAGTAA
1 -AAAATAAAAAAGTAA
23270560 AAAATAAAAAAGTAA
1 AAAATAAAAAAGTAA
23270575 AAAAT
1 AAAAT
23270580 TATGGAATGG
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
12 3 0.07
13 5 0.12
15 26 0.62
16 3 0.07
17 5 0.12
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (15 bp):
AAAATAAAAAAGTAA
Found at i:23270565 original size:28 final size:30
Alignment explanation
Indices: 23270515--23270576 Score: 85
Period size: 28 Copynumber: 2.1 Consensus size: 30
23270505 CAATGAATTG
23270515 AAAATAAAAAATGCTAAAAAATAAAATAA-T
1 AAAATAAAAAATGCTAAAAAATAAAA-AAGT
*
23270545 AAAATAAATAA-G-TAAAAAATAAAAAAGT
1 AAAATAAAAAATGCTAAAAAATAAAAAAGT
23270573 AAAA
1 AAAA
23270577 AATTATGGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 2 0.07
28 17 0.57
29 1 0.03
30 10 0.33
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.18
Consensus pattern (30 bp):
AAAATAAAAAATGCTAAAAAATAAAAAAGT
Found at i:23272489 original size:50 final size:49
Alignment explanation
Indices: 23272432--23272582 Score: 126
Period size: 50 Copynumber: 3.0 Consensus size: 49
23272422 TAGGATTGTC
*
23272432 GTAGCTTCATCATGCTCCACTACAACTTCAGGGAGGTAAGATTTGCTTTT
1 GTAGCTTCATCAT-CTCCACTACAACTTCAGGGAGATAAGATTTGCTTTT
* * * * *
23272482 GTAGCTTCAATCCA-CACCTCTACAAATTTAGGG-GTATAAGATTTGATTTT
1 GTAGCTTC-AT-CATCTCCACTACAACTTCAGGGAG-ATAAGATTTGCTTTT
* * * * *
23272532 GTAGCTTTAATCTTACTCCACTATATCTTCAGAGAGATAAAGATTTGCTTT
1 GTAGC-TTCATCAT-CTCCACTACAACTTCAGGGAGAT-AAGATTTGCTTT
23272583 CATAATTTTA
Statistics
Matches: 77, Mismatches: 16, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
49 2 0.03
50 43 0.56
51 18 0.23
52 14 0.18
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (49 bp):
GTAGCTTCATCATCTCCACTACAACTTCAGGGAGATAAGATTTGCTTTT
Found at i:23272647 original size:197 final size:196
Alignment explanation
Indices: 23272253--23272918 Score: 813
Period size: 197 Copynumber: 3.4 Consensus size: 196
23272243 TTATCCGCTT
* * * *
23272253 CACTACAACTTC-AGGAAGATAGGATTTGCTTTCGTA-A-CTTCAATCCGACCCAT-TGCGACTT
1 CACTACAACTTCAAGG-AGATAAGATTTGC-TTC-TATAGCTTCAATCC-ACCCCTCTACAACTT
* * *** * * * * *
23272314 CAGGGGTATAGGATTTGATGAGGTAGC-TTCATCTTGCTCTGCTGTAACTTCAAAGAGATAAAGA
62 TAGGGGTATAAGATTTGATTTTGTAGCTTTAATCTTGCTCTACTATATCTTCAGAGAGATAAAGA
* * * *
23272378 TTTGCTTTGGTATTTTTAATCCGATCCTTGCAACTTCAAGGACGTAGGATTGTCGTAGCTTCATC
127 TTTGCTTTCGTAATTTTAAT-AGATCCTTGCAACTTCAAGGACGTAGGATTGTCATAGCTTCATC
*
23272443 ATGCTC
191 TTGCTC
* * * * * *
23272449 CACTACAACTTCAGGGAGGTAAGATTTGCTTTTGTAGCTTCAATCCACACCTCTACAAATTTAGG
1 CACTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTCAATCCACCCCTCTACAACTTTAGG
* *
23272514 GGTATAAGATTTGATTTTGTAGCTTTAATCTTACTCCACTATATCTTCAGAGAGATAAAGATTTG
66 GGTATAAGATTTGATTTTGTAGCTTTAATCTTGCTCTACTATATCTTCAGAGAGATAAAGATTTG
* * * * * *
23272579 CTTTCATAATTTTAATATGCTCCTTGCAACATCAAGGATGTAGGATTGTCATAGTTTTATCTTGC
131 CTTTCGTAATTTTAATA-GATCCTTGCAACTTCAAGGACGTAGGATTGTCATAGCTTCATCTTGC
23272644 TC
195 TC
* * *
23272646 CATTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTTAATCTC-CCCCTCTTCAACTTTAG
1 CACTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTCAATC-CACCCCTCTACAACTTTAG
23272710 GGGTATAAGATTTGATTTTGTAGCTTTAATCTTGCTCTACTATATCTTCAGAGAGATAAAGATTT
65 GGGTATAAGATTTGATTTTGTAGCTTTAATCTTGCTCTACTATATCTTCAGAGAGATAAAGATTT
* * * * *
23272775 GCTTCCGTAGTTTTAATCAAATCCTTGCAACTTCAAGGACGTAAGATTGTCATAGCTTCATCTTA
130 GCTTTCGTAATTTTAAT-AGATCCTTGCAACTTCAAGGACGTAGGATTGTCATAGCTTCATCTTG
23272840 CTC
194 CTC
**
23272843 CACTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTCAATCTTCCCCTCTACAACTTTAGG
1 CACTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTCAATCCACCCCTCTACAACTTTAGG
* *
23272908 AGTATAGGATT
66 GGTATAAGATT
23272919 AGAGGTTGTG
Statistics
Matches: 400, Mismatches: 61, Indels: 17
0.84 0.13 0.04
Matches are distributed among these distances:
194 1 0.00
195 7 0.02
196 59 0.15
197 331 0.83
198 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (196 bp):
CACTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTCAATCCACCCCTCTACAACTTTAGG
GGTATAAGATTTGATTTTGTAGCTTTAATCTTGCTCTACTATATCTTCAGAGAGATAAAGATTTG
CTTTCGTAATTTTAATAGATCCTTGCAACTTCAAGGACGTAGGATTGTCATAGCTTCATCTTGCT
C
Found at i:23272901 original size:50 final size:50
Alignment explanation
Indices: 23272649--23272903 Score: 186
Period size: 50 Copynumber: 5.2 Consensus size: 50
23272639 CTTGCTCCAT
*
23272649 TACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTTAATCTCCCCCTC
1 TACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTTAATCTTCCCCTC
* * * * * * * *
23272699 TTCAACTT-TAGGGGTATAAGATTTGATTTTGTAGCTTTAATCTTGCTCTAC
1 TACAACTTCAAGGAG-ATAAGATTTGCTTCTATAGCTTTAATCTTCCCCT-C
* * ** * ****
23272750 TATATCTTC-AGAGAGATAAAGATTTGCTTCCGTAGTTTTAATCAAATCCT-
1 TACAACTTCAAG-GAGAT-AAGATTTGCTTCTATAGCTTTAATCTTCCCCTC
* * * *
23272800 TGCAACTTCAAGGACG-TAAGA-TTG--TC-ATAGC-TTCATCTTACTCCAC
1 TACAACTTCAAGGA-GATAAGATTTGCTTCTATAGCTTTAATCTT-CCCCTC
*
23272846 TACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTCAATCTTCCCCTC
1 TACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTTAATCTTCCCCTC
23272896 TACAACTT
1 TACAACTT
23272904 TAGGAGTATA
Statistics
Matches: 153, Mismatches: 37, Indels: 30
0.70 0.17 0.14
Matches are distributed among these distances:
44 5 0.03
45 7 0.05
46 20 0.13
47 3 0.02
48 3 0.02
49 10 0.07
50 61 0.40
51 19 0.12
52 25 0.16
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (50 bp):
TACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTTAATCTTCCCCTC
Found at i:23272985 original size:197 final size:196
Alignment explanation
Indices: 23272361--23273007 Score: 737
Period size: 197 Copynumber: 3.3 Consensus size: 196
23272351 TCTGCTGTAA
* * * **
23272361 CTTCAAAGAGATAAAGATTTGCTTTGGTATTTTTAATCCGATCCTTGCAACTTCAAGGACGTAGG
1 CTTCAGAGAGATAAAGATTTGCTCT-GTAGTTTTAATCAAATCCTTGCAACTTCAAGGACGTAGG
* * * * * *
23272426 ATTGTCGTAGCTTCATCATGCTCCACTACAACTTCAGGGAGGTAAGATTTGCTTTTGTAGCTTCA
65 ATTGTCATAGCTTCATCTTGCTCCACTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTCA
* * *
23272491 ATCCACACCTCTACAAATTTAGGGGTATAAGATTTGATTTTGTAGCTTTAATCTT-ACTCCACTA
130 ATCTACCCCTCTACAACTTTAGGGGTATAAGATTTGATTTTGTAGCTTTAATCTTCA-TCCACTA
23272555 TAT
194 TAT
* * * ** * *
23272558 CTTCAGAGAGATAAAGATTTGCTTTCATAATTTTAAT-ATGCTCCTTGCAACATCAAGGATGTAG
1 CTTCAGAGAGATAAAGATTTGCTCT-GTAGTTTTAATCA-AATCCTTGCAACTTCAAGGACGTAG
* * * *
23272622 GATTGTCATAGTTTTATCTTGCTCCATTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTT
64 GATTGTCATAGCTTCATCTTGCTCCACTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTC
* * *
23272687 AATCTCCCCCTCTTCAACTTTAGGGGTATAAGATTTGATTTTGTAGCTTTAATCTTGC-TCTACT
129 AATCTACCCCTCTACAACTTTAGGGGTATAAGATTTGATTTTGTAGCTTTAATCTT-CATCCACT
23272751 ATAT
193 ATAT
* *
23272755 CTTCAGAGAGATAAAGATTTGCTTCCGTAGTTTTAATCAAATCCTTGCAACTTCAAGGACGTAAG
1 CTTCAGAGAGATAAAGATTTGC-TCTGTAGTTTTAATCAAATCCTTGCAACTTCAAGGACGTAGG
*
23272820 ATTGTCATAGCTTCATCTTACTCCACTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTCA
65 ATTGTCATAGCTTCATCTTGCTCCACTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTCA
* * * * ** * *
23272885 ATCTTCCCCTCTACAACTTTAGGAGTATAGGATTAGAGGTTGTGGC-TTCA-CTTCATTCCACTA
130 ATCTACCCCTCTACAACTTTAGGGGTATAAGATTTGATTTTGTAGCTTTAATCTTCA-TCCACTA
* *
23272948 AAA
194 TAT
* * * * * * *
23272951 CTTCAGGGAAATTAAGATCTACTACTGTTAGTTTTAATCTAATCCTCTGTAACTTCA
1 CTTCAGAGAGATAAAGATTTGCT-CTG-TAGTTTTAATCAAATCCT-TGCAACTTCA
23273008 TGAATATAGG
Statistics
Matches: 382, Mismatches: 58, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
194 1 0.00
195 4 0.01
196 29 0.08
197 337 0.88
198 11 0.03
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (196 bp):
CTTCAGAGAGATAAAGATTTGCTCTGTAGTTTTAATCAAATCCTTGCAACTTCAAGGACGTAGGA
TTGTCATAGCTTCATCTTGCTCCACTACAACTTCAAGGAGATAAGATTTGCTTCTATAGCTTCAA
TCTACCCCTCTACAACTTTAGGGGTATAAGATTTGATTTTGTAGCTTTAATCTTCATCCACTATA
T
Found at i:23273708 original size:20 final size:20
Alignment explanation
Indices: 23273636--23273709 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 20
23273626 AATAGAAAAT
*
23273636 ATTGGTTAAAAACT-GCAAAC
1 ATTGGTCAAAAA-TGGCAAAC
* * *
23273656 ATTGGTCAATAATTGCGAAC
1 ATTGGTCAAAAATGGCAAAC
* * *
23273676 AATGATAAAAAATGGCAAAC
1 ATTGGTCAAAAATGGCAAAC
23273696 ATTGGTCAAAAATG
1 ATTGGTCAAAAATG
23273710 CTAAATGCAA
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
19 1 0.02
20 40 0.98
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.24
Consensus pattern (20 bp):
ATTGGTCAAAAATGGCAAAC
Found at i:23282750 original size:16 final size:15
Alignment explanation
Indices: 23282718--23282760 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
23282708 TTATAGGCTG
*
23282718 TAAAACTTTAGAT-TC
1 TAAAACTATAG-TCTC
23282733 TAGAAACTATAGTCTC
1 TA-AAACTATAGTCTC
23282749 TAAAACTATAGT
1 TAAAACTATAGT
23282761 GACGAAACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (15 bp):
TAAAACTATAGTCTC
Found at i:23285094 original size:25 final size:25
Alignment explanation
Indices: 23285053--23285102 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
23285043 TTGTAAATTA
*
23285053 GAAAAAATTCTCTAGAG-ATTTTCT
1 GAAAAAATTCTCCAGAGAATTTTCT
*
23285077 GAAATAATCTCTCCAGAGAATTTTCT
1 GAAAAAAT-TCTCCAGAGAATTTTCT
23285103 CTTTACAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 8 0.36
26 7 0.32
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (25 bp):
GAAAAAATTCTCCAGAGAATTTTCT
Found at i:23285502 original size:9 final size:9
Alignment explanation
Indices: 23285488--23285517 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
23285478 AAAGTACCAT
23285488 ATTAATTTA
1 ATTAATTTA
*
23285497 ATTAATTTG
1 ATTAATTTA
23285506 ATTAATTTA
1 ATTAATTTA
23285515 ATT
1 ATT
23285518 TTATTTGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (9 bp):
ATTAATTTA
Found at i:23294381 original size:583 final size:585
Alignment explanation
Indices: 23290869--23310155 Score: 36511
Period size: 585 Copynumber: 33.0 Consensus size: 585
23290859 GCCTACTGAA
*
23290869 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACAGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
*
23290934 GGTAGTTTAATAATCTGCACATTTTTGGAGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23290999 ACATTATCTGGTGGCTCGAACACAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
* * *
23291064 TGTCCACATTATTGGTGTATTGTTGGATGGACAAGTTCTAGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
* * * *
23291129 GATGGGTAGGAACCGTTTTCTAAAAAATCTGCACTGTTTTTGAAAAACCTTTGCATTGACATTGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
* * *
23291194 CATTATGCATTCAAATAAATGAGATTTCTTGGTTGCATAGTTATGTACATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
*
23291259 TTGATGATGTTCTGTATTAATTTTTATTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23291324 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
* * * *
23291389 GATGGACACGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTAGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
* * *
23291454 AATTAAGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATCTTGTATGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23291519 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23291584 ACATTATCTGGTGGCTCGAACATAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
*
23291649 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAAGTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
23291714 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
*
23291779 CATTATGCATTCAAATAAATGTGATTTCTTGGCTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23291844 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23291909 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
* *
23291974 GGTGCACTCGAAAATTTCCAGATAAACTATTATATTTTGGTACTTTATATTTTGGAATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23292039 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23292104 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23292169 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATAATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
*
23292234 TGTCCACATTATTGGTGTGTTGTTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
23292299 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23292364 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23292429 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACT-GGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
* *
23292493 CACCCTTTTAAGTTTCTGACTTTTCAGATATTAATCAAAGTTAGAACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23292558 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
*
23292623 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACAGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23292688 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23292753 ACATTATCTGGTGGCTCGAACACAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
* * *
23292818 TGTCCACATTATTGGTGTATTGTTGGATGGACAAGTTCTAGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
* * *
23292883 GATGGGTAGGAACCGTTTTCTGAAAAATCTGCACTGTTTTTG-AAAACCTTTGCATTGACATTGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
* *
23292947 CATTATGCATTCAAATAAATGAGATTTCTTGGTTGCATAGTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
*
23293012 TTGATGATGTTCTGTATTAATTTTTATTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23293077 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
* * *
23293142 GATGCACACGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTAGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
* * *
23293207 AATTAAGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATCTTGTATGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23293272 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23293337 ACATTATCTGGTGGCTCGAACATAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
*
23293402 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAAGTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
23293467 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
*
23293532 CATTATGCATTCAAATAAATGTGATTTCTTGGCTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23293597 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCC-AACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23293661 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
* *
23293726 GGTGCACTCGAAAATTTCCAGATAAACTATTATATTTTGGTACTTTATATTTTGGAATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23293791 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
*
23293856 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCGGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23293921 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATAATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
*
23293986 TGTCCACATTATTGGTGTGTTGTTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
23294051 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTG-TTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
* *
23294115 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATAATCTATTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23294180 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACT-GGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
*
23294244 CACCCTTTTAAGTTTCTGACTTTTCAGATATTAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23294309 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
*
23294374 AATTATGTTCTGCAAGCCATATCACATGCATGAGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23294439 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23294504 ACATTATCTGGTGGCTCGAACACAATATTCTATTTTTGGCAACTTGAC-ATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
* *
23294568 TGTCCACATTATTAGCGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
23294633 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23294698 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23294763 TTGATGATGTGT-TGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTT-AAAAGC
391 TTGATGATGT-TCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGC
*
23294826 TCATCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAG
455 TCACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAG
23294891 AGGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATA-TTTGGGATTTGTTT
520 AGGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTT
23294955 T
585 T
23294956 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
*
23295021 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTTTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23295086 ACATTATCTGGTGGCTCGAACAGAATGTTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
* * *
23295151 TGTCCTCATTATTGGTGTGTTATTGGAAGGACAAGTTCTGGGAACTTGTTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23295216 GATGGGTAGGAACCGTTTTTTGAAAAATCTGTACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
*
23295281 CATTATGTATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
* *
23295346 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTGATCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
* *
23295411 TACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAAA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23295476 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
* *
23295541 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAACATTATACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23295606 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23295671 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTCGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23295736 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23295801 GATGGGTAGGAACCGTTTTTTTGAAAAATCTGCACCGTTTTTGAAAAAGCTTTGCATTGACATCG
261 GATGGGTAGGAACCG-TTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCG
23295866 TCATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCA
325 TCATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCA
* *
23295931 ATTGATGATGTTCTGTATTAATTTTTATTGTTTTGATTTGCAACCCAAACTGGGCTTTAAAAAGC
390 ATTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGC
23295996 TCACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAG
455 TCACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAG
* *
23296061 AGGTGCACTCGATAATTTTCAGATAAACTATTATATTTTGGTTCTTTATATTTTGGGATTTGTTT
520 AGGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTT
23296126 T
585 T
* *
23296127 AATTATGTTCTACAAGCCATATCACGTGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23296192 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
* *
23296257 ACATTATCTGGTGGTTCGAACAAAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23296322 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23296387 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACCGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23296452 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
* *
23296517 TTGATGATGTTCTGTATTAATTTTTATTGTTTTGATTTGCAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23296582 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
* *
23296647 GGTGCACTCGATAATTTTCAGATAAACTATTATATTTTGGTTCTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
* *
23296712 AATTATGTTCTACAAGCCATATCACGTGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
*
23296777 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTTTCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
* *
23296842 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTCACTATGATATCTGGTGCCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
*
23296907 TGTCCATATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23296972 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACCGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23297037 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
*
23297102 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGCAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
*
23297167 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGTCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
*
23297232 GGTGCACTCGAAAATTTTTAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
* *
23297297 AATTATGTTCTACAAGCCATATCACATGCATTGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23297362 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
* *
23297427 ACATTATCTGGTGGCTCGAAAAGAATATTCTATTTTTGGTAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
*
23297492 TGTCCACATTATTGGTGTGTTGTTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23297557 GATGGGTAGGAACCGTTTTTT-AAAAATCTACACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23297621 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
*
23297686 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGGAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
*
23297751 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAAA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23297816 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTG-TTT
23297881 T
585 T
23297882 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
*
23297947 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGAAATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23298012 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACCATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
* * *
23298077 TGTACACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAAGTTATTATGGTTTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23298142 GATGGGTAGGAACCGTTTTCTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23298207 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
* *
23298272 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGGAACCCAAAATGGGCTTT-AAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23298336 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23298401 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23298466 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23298531 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
* *
23298596 ACATTATCTGGTGGTTCGAACAAAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23298661 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
* *
23298726 GATGGGTAGGAACCGTTTTCTGAAAAATCTGCACTGTTTTTAAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23298791 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
*
23298856 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAAATGGGCTTT-AAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23298920 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
* *
23298985 GGTGCACTCGAAAATTTCCAGATAAACTATTATATTTTGGTACTTTATATTTTGGAATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23299050 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
*
23299115 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCGGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23299180 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATAATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
*
23299245 TGTCCACATTATTGGTGTGTTGTTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
23299310 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
*
23299375 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATAATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23299440 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACT-GGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
*
23299504 CACCCTTTTAAGTTTCTGACTTTTCAGATATTAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23299569 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
*
23299634 AATTATGTTCTGCAAGCCATATCACATGCATGAGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23299699 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23299764 ACATTATCTGGTGGCTCGAACACAATATTCTATTTTTGGCAACTTGAC-ATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
* *
23299828 TGTCCACATTATTAGCGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
23299893 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23299958 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23300023 TTGATGATGTGT-TGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTT-AAAAGC
391 TTGATGATGT-TCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGC
*
23300086 TCATCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAG
455 TCACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAG
23300151 AGGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTT
520 AGGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTT
23300216 T
585 T
23300217 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
*
23300282 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTTTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23300347 ACATTATCTGGTGGCTCGAACAGAATGTTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
* * *
23300412 TGTCCTCATTATTGGTGTGTTATT-GAAGGACAAGTTCTGGGAACTTGTTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23300476 GATGGGTAGGAACCGTTTTTTGAAAAATCTGTACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
*
23300541 CATTATGTATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
* *
23300606 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTGATCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
* *
23300671 TACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAAA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23300736 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
* *
23300801 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAACATTATACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23300866 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23300931 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTCGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23300996 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23301061 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACCGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23301126 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
* *
23301191 TTGATGATGTTCTGTATTAATTTTTATTGTTTTGATTTGCAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23301256 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
* *
23301321 GGTGCACTCGATAATTTTCAGATAAACTATTATATTTTGGTTCTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
*
23301386 AATTATGTTCTACAAGCCATATCACACGTGCATGGGGTTGGAATAATATTGTACGGAGGAAGATC
1 AATTATGTTCTGCAAGCCATATCACA--TGCATGGGGTTGGAATAATATTGTACGGAGGAAGATC
23301451 TTGGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATAT
64 TTGGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATAT
23301516 CTACATTATCTGGTGGCTCGAACA-AATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGG
129 CTACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGG
23301580 CTTGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCG
194 CTTGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCG
23301645 GAGATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATC
259 GAGATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATC
23301710 GTCATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTC
324 GTCATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTC
*
23301775 AATTGATGATGTTCTGTATTAATTTTTATTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAG
389 AATTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAG
23301840 CTCACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACA
454 CTCACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACA
23301905 GAGGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTT
519 GAGGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTT
23301970 TT
584 TT
23301972 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23302037 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
23302102 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCC
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGG-C
23302167 TTGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGG
195 TTGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGG
*
23302232 AGATGGGTAGGAACCGTTTTTTGAAAAATCTGCACCGTTTTTGAAAAAGCTTTGCATTGACATCG
260 AGATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCG
23302297 TCATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCA
325 TCATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCA
*
23302362 ATTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGCAACCCAAACTGGGCTTTAAAAAGC
390 ATTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGC
23302427 TCACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAG
455 TCACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAG
23302492 AGGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTT
520 AGGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTT
23302557 T
585 T
23302558 AATTATGTTCTGCAAGCCATATCACATGCAT-GGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23302622 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
23302687 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
*
23302752 TGTCCACATTATTGGTGTGTTGTTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
23302817 GATGGGTAGGAACCGTTTTTT-AAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23302881 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
*
23302946 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGGAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
*
23303011 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAAA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23303076 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23303141 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23303206 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
23303271 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
*
23303336 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAAGTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23303401 GATGGGTAGGAACCGTTTTCTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23303466 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23303531 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23303596 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23303661 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23303726 AATTATGTTCTGCAAGCCATATCACATGCAT-GGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23303790 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
23303855 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23303920 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
23303985 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23304050 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
*
23304115 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGGAACCCAAA-TGGGCTTT-AAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23304178 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23304243 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23304308 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23304373 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
23304438 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23304503 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23304568 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTAAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23304633 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23304698 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23304763 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23304828 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23304893 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
*
23304958 GGTAGTTTAATAATCTGCACATTTTTTGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23305023 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGTTATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23305088 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23305153 GATGGGTAGTAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
*
23305218 CATTATGCTTTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
*
23305283 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAAATGGGCTTT-AAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23305347 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23305412 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23305477 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23305542 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
23305607 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
*
23305672 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACATATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23305737 GATGGGTAGTAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23305802 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
* *
23305867 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGGAACCCAAAATGGGCTTT-AAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23305931 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23305996 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23306061 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23306126 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
23306191 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23306256 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
* *
23306321 GATGGGTAGGAACCGTTTTCTGAAAAATCTGCACTGTTTTTAAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23306386 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23306451 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23306516 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23306581 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23306646 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23306711 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
* *
23306776 ACATTATCTGGTGGTTCGAACAAAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23306841 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23306906 GATGGGTAGGAACCGTTTTCTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23306971 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23307036 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23307101 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23307166 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
*
23307231 AATTATGTTCTGCAAGCCATATCACAAGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
*
23307296 GGTAGTTTAATAATCTGCACATTTTTTGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23307361 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGTTATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
*
23307426 TGTCCACATTATTGGTGTGTTATTGGATGGACAGGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23307491 GATGGGTAGTAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
*
23307556 CATTATGCTTTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
*
23307621 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAAATGGGCTTT-AAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23307685 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23307750 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
*
23307815 AATTATGTTCTGCAAGCCATGTCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23307880 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
23307945 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23308010 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23308075 GATGGGTAGGAACCGTTTTCTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
*
23308140 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATTTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23308205 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23308270 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
*
23308335 GGTGCACTCGAAAATTTTCAGATTAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23308400 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23308465 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
*
23308530 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGTTATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23308595 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23308660 GATGGGTAGTAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
*
23308725 CATTATGCTTTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
*
23308790 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAAGCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
*
23308855 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCCACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
* *
23308920 GGTGCACTCAAAAATTTTCAAATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
*
23308985 AATTATGTTCTGCAAGCCATATCACATGCATGAGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23309050 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
23309115 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23309180 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
*
23309245 GATGGGTAGGAACCGTTTTCTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
*
23309310 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATTTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23309375 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23309440 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
*
23309505 GGTGCACTCGAAAATTTTCAGATTAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23309570 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
1 AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
23309635 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
66 GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
23309700 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
131 ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
23309765 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
196 TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
* *
23309830 GATGGGTAGGAACCGTTTTCTGAAAAATCTGCACTGTTTTTAAAAAAGCTTTGCATTGACATCGT
261 GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
23309895 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
326 CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
23309960 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
391 TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
23310025 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
456 CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
23310090 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
521 GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
23310155 A
1 A
23310156 TTTTTGTGGA
Statistics
Matches: 18329, Mismatches: 342, Indels: 62
0.98 0.02 0.00
Matches are distributed among these distances:
582 472 0.03
583 2629 0.14
584 6030 0.33
585 7472 0.41
586 1602 0.09
587 124 0.01
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (585 bp):
AATTATGTTCTGCAAGCCATATCACATGCATGGGGTTGGAATAATATTGTACGGAGGAAGATCTT
GGTAGTTTAATAATCTGCACATTTTTGGTGGCTTGACCACAATATTCTGTATCTGACATATATCT
ACATTATCTGGTGGCTCGAACAGAATATTCTATTTTTGGCAACTTGACTATGATATCTGGTGGCT
TGTCCACATTATTGGTGTGTTATTGGATGGACAAGTTCTGGGAACTTATTATGGTGTGTATCGGA
GATGGGTAGGAACCGTTTTTTGAAAAATCTGCACTGTTTTTGAAAAAGCTTTGCATTGACATCGT
CATTATGCATTCAAATAAATGTGATTTCTTGGTTGCATATTTATGTATATATATGATCTGTTCAA
TTGATGATGTTCTGTATTAATTTTTGTTGTTTTGATTTGTAACCCAAACTGGGCTTTAAAAAGCT
CACCCTTTTAAGTTTCTGACTTTTCAGATAATAATCAAAGTTAGGACATGGGCTCAACTTACAGA
GGTGCACTCGAAAATTTTCAGATAAACTATTATATTTTGGTACTTTATATTTTGGGATTTGTTTT
Found at i:23313091 original size:19 final size:19
Alignment explanation
Indices: 23313067--23313105 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
23313057 GTTTTCAATC
23313067 ATGGTACTTCTTGTGGACT
1 ATGGTACTTCTTGTGGACT
23313086 ATGGTACTTCTTGTGGACT
1 ATGGTACTTCTTGTGGACT
23313105 A
1 A
23313106 ACTCCATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.18, C:0.15, G:0.26, T:0.41
Consensus pattern (19 bp):
ATGGTACTTCTTGTGGACT
Found at i:23321070 original size:20 final size:20
Alignment explanation
Indices: 23321036--23321128 Score: 74
Period size: 20 Copynumber: 4.8 Consensus size: 20
23321026 TTCCAAAAAA
* *
23321036 TAATATT-ATTTTAATTGTT
1 TAATATTAAATTTAATTATT
23321055 TAATATTAAATTT-A--ATT
1 TAATATTAAATTTAATTATT
23321072 TAATACTT-AATTT-ATTAATT
1 TAATA-TTAAATTTAATT-ATT
* *
23321092 TAATA-TAAAATTGATTATCT
1 TAATATTAAATTTAATTAT-T
23321112 TAATATTAAATTTAATT
1 TAATATTAAATTTAATT
23321129 TAATATTTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
17 13 0.22
18 3 0.05
19 14 0.23
20 21 0.35
21 9 0.15
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
TAATATTAAATTTAATTATT
Found at i:23322167 original size:23 final size:23
Alignment explanation
Indices: 23322129--23322242 Score: 185
Period size: 23 Copynumber: 5.0 Consensus size: 23
23322119 TAATGCGTTA
*
23322129 TATG-TTAAAAGATAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
23322151 TATGCTTAAAAGTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
*
23322174 TATGCTTAAGAGTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
23322197 TATGCTTAAAAGTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
* *
23322220 TAGGCTTAATAGTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
23322243 AATGTGTAAA
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
22 4 0.05
23 82 0.95
ACGTcount: A:0.34, C:0.04, G:0.19, T:0.43
Consensus pattern (23 bp):
TATGCTTAAAAGTTAATGTGATT
Found at i:23329983 original size:15 final size:15
Alignment explanation
Indices: 23329963--23329994 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
23329953 TAAATTAATA
23329963 AAATACAATTAAGAT
1 AAATACAATTAAGAT
23329978 AAATACAATTAAGAT
1 AAATACAATTAAGAT
23329993 AA
1 AA
23329995 GTATTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (15 bp):
AAATACAATTAAGAT
Found at i:23331670 original size:37 final size:37
Alignment explanation
Indices: 23331629--23331699 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
23331619 TGAATGATAG
*
23331629 AAACACAAAAGATATAACTATTAAATGTGAAATTCAA
1 AAACACAAAAGATATAACTATGAAATGTGAAATTCAA
* *
23331666 AAACACAAAATATATAACTCTGAAATGTGAAATT
1 AAACACAAAAGATATAACTATGAAATGTGAAATT
23331700 AATTTTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.25
Consensus pattern (37 bp):
AAACACAAAAGATATAACTATGAAATGTGAAATTCAA
Found at i:23335743 original size:18 final size:18
Alignment explanation
Indices: 23335720--23335754 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23335710 CCTTCATCCT
* *
23335720 CTAAGGGGAAGTAGAAAG
1 CTAAGGGAAAGAAGAAAG
23335738 CTAAGGGAAAGAAGAAA
1 CTAAGGGAAAGAAGAAA
23335755 CTGACTAAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.06, G:0.34, T:0.09
Consensus pattern (18 bp):
CTAAGGGAAAGAAGAAAG
Found at i:23341640 original size:23 final size:24
Alignment explanation
Indices: 23341592--23341652 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 24
23341582 TCAGTCACTT
23341592 GAAAAAGGAAAATGAGAAAAAGAAA
1 GAAAAA-GAAAATGAGAAAAAGAAA
23341617 GAAAAAGAAAA-GAG-AAAAGAAAA
1 GAAAAAGAAAATGAGAAAAAG-AAA
23341640 GAAGAAA-AAAATG
1 GAA-AAAGAAAATG
23341653 TTTGCTATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
22 5 0.15
23 13 0.39
24 9 0.27
25 6 0.18
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (24 bp):
GAAAAAGAAAATGAGAAAAAGAAA
Found at i:23341645 original size:30 final size:29
Alignment explanation
Indices: 23341594--23341650 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 29
23341584 AGTCACTTGA
23341594 AAAAGGAAAATGAGAAAAAGAAAGAAAAAG
1 AAAAGGAAAATGAGAAAAAGAAA-AAAAAG
23341624 AAAAGAGAAAA-GA-AAAGAAGAAAAAAA
1 AAAAG-GAAAATGAGAAA-AAGAAAAAAA
23341651 TGTTTGCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
29 7 0.28
30 13 0.52
31 5 0.20
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (29 bp):
AAAAGGAAAATGAGAAAAAGAAAAAAAAG
Found at i:23347322 original size:20 final size:21
Alignment explanation
Indices: 23347298--23347350 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
23347288 GTGATTTTTG
*
23347298 GAAAATTAATTTTGATCAAGT
1 GAAAATTAATTTTAATCAAGT
* *
23347319 -AAAATTAA-ATTAATCAATT
1 GAAAATTAATTTTAATCAAGT
23347338 GAAAATTAATTTT
1 GAAAATTAATTTT
23347351 CAAGTCAGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 8 0.31
20 16 0.62
21 2 0.08
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.40
Consensus pattern (21 bp):
GAAAATTAATTTTAATCAAGT
Found at i:23353046 original size:44 final size:44
Alignment explanation
Indices: 23352983--23353068 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
23352973 TCGAATCGAG
23352983 TCGAGTCGAGTTAACAAATCCTATTATTTATACTCAATGTTGAT
1 TCGAGTCGAGTTAACAAATCCTATTATTTATACTCAATGTTGAT
*
23353027 TCGAGTTGAGTTAACAAATCCTATTATTTATACTCAATGTTG
1 TCGAGTCGAGTTAACAAATCCTATTATTTATACTCAATGTTG
23353069 CATTTACGTG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (44 bp):
TCGAGTCGAGTTAACAAATCCTATTATTTATACTCAATGTTGAT
Found at i:23355250 original size:18 final size:17
Alignment explanation
Indices: 23355204--23355251 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
23355194 ATACACAATT
23355204 TTTTTTTC-TTTT-TCA
1 TTTTTTTCTTTTTCTCA
*
23355219 TTTTCTTCCTTTTTCTCA
1 TTTT-TTTCTTTTTCTCA
23355237 GTTTTTTTCTTTTTC
1 -TTTTTTTCTTTTTC
23355252 AGGTGACTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 4 0.15
16 3 0.11
17 4 0.15
18 12 0.44
19 4 0.15
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTTTTTCTTTTTCTCA
Found at i:23377617 original size:35 final size:35
Alignment explanation
Indices: 23377578--23377650 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
23377568 GACTACTCTG
*
23377578 TTGGGGAGTTTTTTCTTTAATTTGTGGGTTTTAGA
1 TTGGGAAGTTTTTTCTTTAATTTGTGGGTTTTAGA
23377613 TTGGGAAGTTTTTTCTTTAATTTGTGGGTTTTAGA
1 TTGGGAAGTTTTTTCTTTAATTTGTGGGTTTTAGA
23377648 TTG
1 TTG
23377651 TTTATTTTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.15, C:0.03, G:0.27, T:0.55
Consensus pattern (35 bp):
TTGGGAAGTTTTTTCTTTAATTTGTGGGTTTTAGA
Found at i:23378353 original size:18 final size:20
Alignment explanation
Indices: 23378330--23378367 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
23378320 TAATTTTTTT
23378330 TTTCAAGTAT-TCA-AAGAA
1 TTTCAAGTATATCACAAGAA
23378348 TTTCAAGTATATCACAAGAA
1 TTTCAAGTATATCACAAGAA
23378368 AAAGTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 3 0.17
20 5 0.28
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.32
Consensus pattern (20 bp):
TTTCAAGTATATCACAAGAA
Found at i:23379400 original size:19 final size:19
Alignment explanation
Indices: 23379376--23379413 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
23379366 TAAAGTTAAT
23379376 AACAAATTTAATTACGGTG
1 AACAAATTTAATTACGGTG
* *
23379395 AACAAATTTGATTATGGTG
1 AACAAATTTAATTACGGTG
23379414 GGTGACAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.34
Consensus pattern (19 bp):
AACAAATTTAATTACGGTG
Found at i:23384580 original size:35 final size:33
Alignment explanation
Indices: 23384534--23384622 Score: 90
Period size: 35 Copynumber: 2.6 Consensus size: 33
23384524 GAAATCATTG
* *
23384534 GTTTATTTGACTAGCGCTGG-ACTCAACTTCCGTC
1 GTTTATCTGACTAGCGCTGGCACACAACTT--GTC
*
23384568 AGTTTATCTGACTAGTGCTGGGCACACAACTTGTC
1 -GTTTATCTGACTAGCGCT-GGCACACAACTTGTC
* *
23384603 GGTTATCCGACTAGCGCTGG
1 GTTTATCTGACTAGCGCTGG
23384623 GTGCAAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
33 2 0.04
34 15 0.33
35 19 0.41
36 2 0.04
37 8 0.17
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.31
Consensus pattern (33 bp):
GTTTATCTGACTAGCGCTGGCACACAACTTGTC
Found at i:23384670 original size:145 final size:146
Alignment explanation
Indices: 23384424--23384698 Score: 367
Period size: 145 Copynumber: 1.9 Consensus size: 146
23384414 TCTCCATCTA
23384424 TTTATCTAACTAGTATCGGGCACACAAATCGTCGGTTTATCCGACTAGCGCTGGGTGCAAACATT
1 TTTATCTAACTAGTATCGGGCACACAAATCGTCGGTTTATCCGACTAGCGCTGGGTGCAAACATT
* * * * * * *
23384489 TGTTGGTATATCCAATTAGAGCTGAGCTTACCTTTGAAATCATTGGTTTATTTGACTAGCGCTGG
66 CGTTGGTATATCCAACTAGAGCTGAGCTCACATTTGAAATCATCGATTTATCTGACTAGCGCTGG
23384554 ACTCAACTTCCGTCAG
131 ACTCAACTTCCGTCAG
* * * *
23384570 TTTATCTGACTAGT-GCTGGGCACACAACTTGTCGG-TTATCCGACTAGCGCTGGGTGCAAA-AT
1 TTTATCTAACTAGTATC-GGGCACACAAATCGTCGGTTTATCCGACTAGCGCTGGGTGCAAACAT
* * * * *
23384632 ATCGTTGGTATATCCAACTAGAGTTGGGCTCATATTTGATATCGTCGATTTATCTGACTAGCGCT
65 -TCGTTGGTATATCCAACTAGAGCTGAGCTCACATTTGAAATCATCGATTTATCTGACTAGCGCT
23384697 GG
129 GG
23384699 GCGCAAACAC
Statistics
Matches: 111, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
144 2 0.02
145 80 0.72
146 29 0.26
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.33
Consensus pattern (146 bp):
TTTATCTAACTAGTATCGGGCACACAAATCGTCGGTTTATCCGACTAGCGCTGGGTGCAAACATT
CGTTGGTATATCCAACTAGAGCTGAGCTCACATTTGAAATCATCGATTTATCTGACTAGCGCTGG
ACTCAACTTCCGTCAG
Found at i:23386043 original size:3 final size:3
Alignment explanation
Indices: 23386035--23386068 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
23386025 GGTGAGTTGA
23386035 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
23386069 TATCAAACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:23390755 original size:13 final size:13
Alignment explanation
Indices: 23390737--23390761 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23390727 TTAATGAATG
23390737 AAATAAAAATAAT
1 AAATAAAAATAAT
23390750 AAATAAAAATAA
1 AAATAAAAATAA
23390762 ATAATGAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATAAAAATAAT
Found at i:23392248 original size:169 final size:171
Alignment explanation
Indices: 23391962--23392274 Score: 386
Period size: 169 Copynumber: 1.8 Consensus size: 171
23391952 TTACTCCAAA
* *
23391962 CCTCCAAACATTTTTATTTTACCCCCAAAACTTTTATTTCTTCCCACTTTTCCCCAAAACTTTTA
1 CCTCAAAACATTTTTATTTTACCCCCAAAACTTTTATTTCTTCCCACTTTTCCCCAAAAATTTTA
* * * * * ** * *
23392027 TTTCTCTCTCATCCCACCCTCAATCTACCCCAATTCATTTCCCTCCAA-TTTTTTT-AATATTTT
66 CTCCCCTCTCATCCCACCATCAATCTACCCAAACCCATTCCCCTCCAATTTTTTTTAAATATTTC
23392090 CCTTCCAAAATTTTATTCTTCCCATTTAATTTTCCCAAAAAC
131 CCTT-CAAAATTTTATTCTTCCCATTTAATTTTCCCAAAAAC
* * *
23392132 CCTCAAAACA-TTTTA-TTTCCCCCCAAAACTTTTACTTTC-TCCCACTTTCTCTCTAAAAATTT
1 CCTCAAAACATTTTTATTTTACCCCCAAAACTTTTA-TTTCTTCCCACTTT-TCCCCAAAAATTT
* * * *
23392194 TACTCCCCTCTCATCTCATCATCCATTTACCCTAAACCCATTCCCCT-CAATTTTTTTTAAATAT
64 TACTCCCCTCTCATCCCACCATCAATCTACCC-AAACCCATTCCCCTCCAATTTTTTTTAAATAT
23392258 TTCCCTTCAAAATTTTA
128 TTCCCTTCAAAATTTTA
23392275 CTTTTCTATT
Statistics
Matches: 120, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
168 27 0.22
169 46 0.38
170 36 0.30
171 11 0.09
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.42
Consensus pattern (171 bp):
CCTCAAAACATTTTTATTTTACCCCCAAAACTTTTATTTCTTCCCACTTTTCCCCAAAAATTTTA
CTCCCCTCTCATCCCACCATCAATCTACCCAAACCCATTCCCCTCCAATTTTTTTTAAATATTTC
CCTTCAAAATTTTATTCTTCCCATTTAATTTTCCCAAAAAC
Found at i:23407153 original size:3 final size:3
Alignment explanation
Indices: 23407140--23407216 Score: 102
Period size: 3 Copynumber: 25.7 Consensus size: 3
23407130 TGTGGGTATT
* *
23407140 GAA GCA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA AAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* *
23407188 GAA AAA GAA G-A GAA GGAA GAA AAA GAA GA
1 GAA GAA GAA GAA GAA -GAA GAA GAA GAA GA
23407217 CGTTGCCCTG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.03
3 59 0.92
4 3 0.05
ACGTcount: A:0.68, C:0.01, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:23407667 original size:17 final size:17
Alignment explanation
Indices: 23407620--23407657 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
23407610 TTTTCTCTAG
*
23407620 TTGTCATTACATTTTAA
1 TTGTCACTACATTTTAA
*
23407637 TTGTCACTGCATTTTAA
1 TTGTCACTACATTTTAA
23407654 TTGT
1 TTGT
23407658 TCTCACATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.13, G:0.11, T:0.53
Consensus pattern (17 bp):
TTGTCACTACATTTTAA
Found at i:23423906 original size:23 final size:22
Alignment explanation
Indices: 23423879--23423922 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
23423869 AAAATATTTC
*
23423879 ATTAAATAATTTGGGTTGAATTA
1 ATTAAATAAATTGGGTT-AATTA
*
23423902 ATTAATTAAATTGGGTTAATT
1 ATTAAATAAATTGGGTTAATT
23423923 TTATTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (22 bp):
ATTAAATAAATTGGGTTAATTA
Found at i:23429279 original size:36 final size:36
Alignment explanation
Indices: 23429227--23429327 Score: 168
Period size: 36 Copynumber: 2.8 Consensus size: 36
23429217 TAGTAATAGG
*
23429227 CATGACCTTTAGGTCAACAGGGAGTAAAATGAGCAC
1 CATGACCTTCAGGTCAACAGGGAGTAAAATGAGCAC
*
23429263 CATGACCTTC-GAGTCAACAGGGAGGAAAATGAGCAC
1 CATGACCTTCAG-GTCAACAGGGAGTAAAATGAGCAC
23429299 CATGACCTTCAGGTCAACAGGGAGTAAAA
1 CATGACCTTCAGGTCAACAGGGAGTAAAA
23429328 CGAATAACGA
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
35 1 0.02
36 58 0.97
37 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.26, T:0.17
Consensus pattern (36 bp):
CATGACCTTCAGGTCAACAGGGAGTAAAATGAGCAC
Found at i:23436924 original size:24 final size:24
Alignment explanation
Indices: 23436895--23436942 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
23436885 TGTCATTGCA
*
23436895 ATTTTTCTGTTAATTT-TTGTCTTTT
1 ATTTTACT-TTAATTTGTT-TCTTTT
23436920 ATTTTACTTTAATTTGTTTCTTT
1 ATTTTACTTTAATTTGTTTCTTT
23436943 AGTTTTTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.15, C:0.08, G:0.06, T:0.71
Consensus pattern (24 bp):
ATTTTACTTTAATTTGTTTCTTTT
Found at i:23443793 original size:18 final size:18
Alignment explanation
Indices: 23443772--23443899 Score: 112
Period size: 18 Copynumber: 7.1 Consensus size: 18
23443762 TAATGCTCTT
*
23443772 ACGAGCCAGTATGCTTAA
1 ACGAGCCAGTATGCTCAA
23443790 ACGAGCCAGTATGCTCAA
1 ACGAGCCAGTATGCTCAA
* * *
23443808 GCGAGCCACTACGCTCAA
1 ACGAGCCAGTATGCTCAA
* *
23443826 ATGAGCCAGTATGCTCTA
1 ACGAGCCAGTATGCTCAA
* *
23443844 ACAAGCCAATATGCTCAA
1 ACGAGCCAGTATGCTCAA
** * ** **
23443862 ATAAGCTAACATGCTCTG
1 ACGAGCCAGTATGCTCAA
*
23443880 ACGAGCCAGTAGGCTCAA
1 ACGAGCCAGTATGCTCAA
23443898 AC
1 AC
23443900 TTTCGTTTCT
Statistics
Matches: 84, Mismatches: 26, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 84 1.00
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (18 bp):
ACGAGCCAGTATGCTCAA
Found at i:23450954 original size:18 final size:18
Alignment explanation
Indices: 23450933--23450984 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
23450923 TAATGCTTTT
*
23450933 ACGAGTCAGTATGCTCGA
1 ACGAGCCAGTATGCTCGA
*
23450951 ACGAGCCAGTATGCTCTA
1 ACGAGCCAGTATGCTCGA
23450969 ACGAGCCAGTATGCTC
1 ACGAGCCAGTATGCTC
23450985 AAACTTCCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (18 bp):
ACGAGCCAGTATGCTCGA
Found at i:23465151 original size:17 final size:17
Alignment explanation
Indices: 23465129--23465161 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23465119 TACATTTATG
*
23465129 TTTATTTCTTTTTTTAC
1 TTTATTTCTTCTTTTAC
23465146 TTTATTTCTTCTTTTA
1 TTTATTTCTTCTTTTA
23465162 TCAGTTTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTTCTTCTTTTAC
Found at i:23469751 original size:12 final size:12
Alignment explanation
Indices: 23469730--23469758 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
23469720 GAGATGAAGG
23469730 TTTT-GGAGTGT
1 TTTTGGGAGTGT
23469741 TTTTGGGAGTGT
1 TTTTGGGAGTGT
23469753 TTTTGG
1 TTTTGG
23469759 ATGCACAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.07, C:0.00, G:0.38, T:0.55
Consensus pattern (12 bp):
TTTTGGGAGTGT
Found at i:23478532 original size:21 final size:21
Alignment explanation
Indices: 23478508--23478575 Score: 66
Period size: 21 Copynumber: 3.1 Consensus size: 21
23478498 GGAACCTAAG
* *
23478508 GAGAAGAAGGAAAATGAGGAA
1 GAGAAGAAGGAAAAAGAAGAA
*
23478529 GAGAAGAAAGAAAAAGAAGAA
1 GAGAAGAAGGAAAAAGAAGAA
23478550 GA-AGAGAAGGATGAAAAGAAGGAA
1 GAGA-AGAAGGA--AAAAGAA-GAA
23478574 GA
1 GA
23478576 TGCCCCGATA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
20 1 0.03
21 26 0.67
23 7 0.18
24 5 0.13
ACGTcount: A:0.62, C:0.00, G:0.35, T:0.03
Consensus pattern (21 bp):
GAGAAGAAGGAAAAAGAAGAA
Found at i:23478553 original size:24 final size:24
Alignment explanation
Indices: 23478526--23478575 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
23478516 GGAAAATGAG
23478526 GAAGAGAAGAAAGAAAAAGAA-GAA
1 GAAGAGAAGAAAG-AAAAGAAGGAA
* *
23478550 GAAGAGAAGGATGAAAAGAAGGAA
1 GAAGAGAAGAAAGAAAAGAAGGAA
23478574 GA
1 GA
23478576 TGCCCCGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.64, C:0.00, G:0.34, T:0.02
Consensus pattern (24 bp):
GAAGAGAAGAAAGAAAAGAAGGAA
Found at i:23482880 original size:30 final size:29
Alignment explanation
Indices: 23482837--23482893 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
23482827 CTTTAGCAAA
23482837 TAAAATTTACAATTTAAACCCTTAAATTCC
1 TAAAATTTACAA-TTAAACCCTTAAATTCC
**
23482867 TAAAA-TTATCAATTAAGTCCTTAAATT
1 TAAAATTTA-CAATTAAACCCTTAAATT
23482894 AAATTTAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.44, C:0.16, G:0.02, T:0.39
Consensus pattern (29 bp):
TAAAATTTACAATTAAACCCTTAAATTCC
Found at i:23493354 original size:17 final size:17
Alignment explanation
Indices: 23493315--23493351 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
23493305 TTGGACAAAA
*
23493315 TTTTATACATTTTATAT
1 TTTTATAAATTTTATAT
23493332 TTTTATAAATTTTA-AT
1 TTTTATAAATTTTATAT
23493348 TTTT
1 TTTT
23493352 TATGTTGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTATAAATTTTATAT
Found at i:23494635 original size:19 final size:18
Alignment explanation
Indices: 23494611--23494674 Score: 62
Period size: 19 Copynumber: 3.6 Consensus size: 18
23494601 ATTTTTCCCA
23494611 TAAAAATTATTAAAATCAT
1 TAAAAATTATTAAAAT-AT
* *
23494630 TAAAAATT-TATAAAAAAA
1 TAAAAATTAT-TAAAATAT
23494648 TAAAAA-TATT-AAATAT
1 TAAAAATTATTAAAATAT
*
23494664 TAAAAAATATT
1 TAAAAATTATT
23494675 GCAAATACTA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
16 10 0.26
17 6 0.16
18 9 0.24
19 13 0.34
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (18 bp):
TAAAAATTATTAAAATAT
Found at i:23497302 original size:33 final size:33
Alignment explanation
Indices: 23497253--23497335 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
23497243 GGATTCACGG
* *
23497253 GATGATAACAAGGAGAATCCAACAGATAGGCAA
1 GATGATGACAAGGAGAATCCAACAGATAGACAA
* * * * *
23497286 GATGATGACAATGAGAATTCGACAGATCGACAG
1 GATGATGACAAGGAGAATCCAACAGATAGACAA
*
23497319 GATGATGAGAAGGAGAA
1 GATGATGACAAGGAGAA
23497336 ATTGACGTAT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.45, C:0.12, G:0.29, T:0.14
Consensus pattern (33 bp):
GATGATGACAAGGAGAATCCAACAGATAGACAA
Found at i:23502182 original size:36 final size:35
Alignment explanation
Indices: 23502137--23502239 Score: 152
Period size: 36 Copynumber: 2.9 Consensus size: 35
23502127 TGAAAGTAAT
* *
23502137 TATGAGGGTATGTTATTCATGTCATGTGACAATAAA
1 TATGTGGGTATGTT-TTCATGCCATGTGACAATAAA
23502173 TATGTGGGTATGTTTTTCATGCCATGTGACAATAAA
1 TATGTGGGTATG-TTTTCATGCCATGTGACAATAAA
*
23502209 TATGTGAGTATGTCTTTCATGCCATGTGACA
1 TATGTGGGTATGT-TTTCATGCCATGTGACA
23502240 GTAATTATAT
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
35 1 0.02
36 59 0.95
37 2 0.03
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (35 bp):
TATGTGGGTATGTTTTCATGCCATGTGACAATAAA
Found at i:23502658 original size:10 final size:10
Alignment explanation
Indices: 23502645--23502704 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
23502635 TCATAAATTA
23502645 TGATTAAATG
1 TGATTAAATG
* *
23502655 TGATTATACG
1 TGATTAAATG
* *
23502665 TGACTATATG
1 TGATTAAATG
*
23502675 TGATTATATG
1 TGATTAAATG
23502685 TGATTAATATG
1 TGATTAA-ATG
*
23502696 TGATGAAAT
1 TGATTAAAT
23502705 ATATGCCTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
10 33 0.79
11 9 0.21
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (10 bp):
TGATTAAATG
Found at i:23502677 original size:20 final size:21
Alignment explanation
Indices: 23502652--23502699 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
23502642 TTATGATTAA
23502652 ATGTGATTATACGTGACT-AT
1 ATGTGATTATACGTGACTAAT
* *
23502672 ATGTGATTATATGTGATTAAT
1 ATGTGATTATACGTGACTAAT
23502693 ATGTGAT
1 ATGTGAT
23502700 GAAATATATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.31, C:0.04, G:0.21, T:0.44
Consensus pattern (21 bp):
ATGTGATTATACGTGACTAAT
Found at i:23503579 original size:21 final size:19
Alignment explanation
Indices: 23503535--23503571 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23503525 GTATGACTTA
* *
23503535 TAATATGTATGAATACTAG
1 TAATAAGTATGAACACTAG
23503554 TAATAAGTATGAACACTA
1 TAATAAGTATGAACACTA
23503572 TAGTAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32
Consensus pattern (19 bp):
TAATAAGTATGAACACTAG
Found at i:23505541 original size:25 final size:24
Alignment explanation
Indices: 23505503--23505549 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
23505493 CTAAGAGGAA
* *
23505503 TTTTTATACAACATTCAGAGAATT
1 TTTTTACACAACATTCAAAGAATT
23505527 TTTTTACACATACATTCAAAGAA
1 TTTTTACACA-ACATTCAAAGAA
23505550 ATTTCAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.38
Consensus pattern (24 bp):
TTTTTACACAACATTCAAAGAATT
Found at i:23505805 original size:11 final size:11
Alignment explanation
Indices: 23505784--23505833 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
23505774 TTATTTTTGC
23505784 ATTTAATTTATT
1 ATTT-ATTTATT
23505796 GA-TTATTTATT
1 -ATTTATTTATT
23505807 ATTTA--T-TT
1 ATTTATTTATT
23505815 ATTTATTTATT
1 ATTTATTTATT
23505826 ATTTATTT
1 ATTTATTT
23505834 TCATGCCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
8 7 0.21
9 1 0.03
10 2 0.06
11 20 0.61
12 2 0.06
13 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (11 bp):
ATTTATTTATT
Found at i:23505807 original size:7 final size:7
Alignment explanation
Indices: 23505791--23505832 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
23505781 TGCATTTAAT
*
23505791 TTATTGA
1 TTATTTA
23505798 TTATTTA
1 TTATTTA
23505805 TTATTTA
1 TTATTTA
*
23505812 TT-TAT-
1 TTATTTA
23505817 TTATTTA
1 TTATTTA
23505824 TTATTTA
1 TTATTTA
23505831 TT
1 TT
23505833 TTCATGCCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
5 2 0.07
6 4 0.13
7 24 0.80
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (7 bp):
TTATTTA
Found at i:23505812 original size:4 final size:4
Alignment explanation
Indices: 23505784--23505833 Score: 61
Period size: 4 Copynumber: 13.0 Consensus size: 4
23505774 TTATTTTTGC
*
23505784 ATTT AATTT ATTG A-TT ATTT A-TT ATTT ATTT ATTT ATTT A-TT ATTT
1 ATTT -ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
23505830 ATTT
1 ATTT
23505834 TCATGCCTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
3 8 0.20
4 28 0.70
5 4 0.10
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (4 bp):
ATTT
Found at i:23505902 original size:5 final size:6
Alignment explanation
Indices: 23505850--23505945 Score: 61
Period size: 6 Copynumber: 15.2 Consensus size: 6
23505840 CTAATCTCAA
* * *
23505850 TTATTT TTATTGT TTATATT TGT-TTGT TTATTT TAACATT TAATTT TTATTT
1 TTATTT TTATT-T TTAT-TT T-TATT-T TTATTT TTA-TTT TTATTT TTATTT
* * *
23505902 TTATTT TTA-TT TTATTGT TTATTT ATCTTG TTATTAT TTATTT T
1 TTATTT TTATTT TTATT-T TTATTT TTATTT TTATT-T TTATTT T
23505946 CATGCCATTT
Statistics
Matches: 71, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
5 5 0.07
6 36 0.51
7 28 0.39
8 2 0.03
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (6 bp):
TTATTT
Found at i:23505907 original size:12 final size:12
Alignment explanation
Indices: 23505850--23505945 Score: 61
Period size: 13 Copynumber: 7.6 Consensus size: 12
23505840 CTAATCTCAA
23505850 TTATTTTTATTGT
1 TTATTTTTATT-T
23505863 TTATATTTGT-TTGT
1 TTAT-TTT-TATT-T
* *
23505877 TTATTTTAACATT
1 TTATTTTTA-TTT
*
23505890 TAATTTTTATTT
1 TTATTTTTATTT
23505902 TTATTTTTA-TT
1 TTATTTTTATTT
23505913 TTATTGTTTATTT
1 TTATT-TTTATTT
* * *
23505926 ATCTTGTTATTAT
1 TTATTTTTATT-T
23505939 TTATTTT
1 TTATTTT
23505946 CATGCCATTT
Statistics
Matches: 64, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
11 7 0.11
12 19 0.30
13 25 0.39
14 12 0.19
15 1 0.02
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (12 bp):
TTATTTTTATTT
Found at i:23505912 original size:103 final size:107
Alignment explanation
Indices: 23505753--23505951 Score: 241
Period size: 103 Copynumber: 1.9 Consensus size: 107
23505743 TTCTTTTTTA
**
23505753 TTATTATTTATATTGAGTTGTTTATTTTTGCATTTAATTTATTGATTATTTATTA-TTTA-TTTA
1 TTATTATTTATATTGAGTTGTTTATTTTAACATTTAATTTATTGATTATTTATTATTTTATTTTA
23505816 TTTA-T-TTATTATTTATTTTCATGCCTAATCTCAATTATTT
66 TTTATTGTTATTATTTATTTTCATGCCTAATCTCAATTATTT
* * *
23505856 TTATTGTTTATATTTG-TTTGTTTATTTTAACATTTAATTTTTATT-TTTATTT-TTATTTTATT
1 TTATTATTTATA-TTGAGTTGTTTATTTTAACATTTAA--TTTATTGATTATTTATTATTTTA-T
23505918 GTTTATTTATCTTGTTATTATTTATTTTCATGCC
62 -TTTATTTA--TTGTTATTATTTATTTTCATGCC
23505952 ATTTATTATT
Statistics
Matches: 80, Mismatches: 5, Indels: 14
0.81 0.05 0.14
Matches are distributed among these distances:
103 32 0.40
104 13 0.16
105 6 0.08
107 8 0.10
110 1 0.01
111 20 0.25
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.66
Consensus pattern (107 bp):
TTATTATTTATATTGAGTTGTTTATTTTAACATTTAATTTATTGATTATTTATTATTTTATTTTA
TTTATTGTTATTATTTATTTTCATGCCTAATCTCAATTATTT
Found at i:23505941 original size:19 final size:17
Alignment explanation
Indices: 23505894--23505944 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 17
23505884 AACATTTAAT
*
23505894 TTTTATTTTTATTTTTA
1 TTTTATTTTTATTTATA
*
23505911 TTTTATTGTTTATTTATC
1 TTTTATT-TTTATTTATA
23505929 TTGTTATTATTTATTT
1 TT-TTATT-TTTATTT
23505945 TCATGCCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 7 0.24
18 10 0.34
19 12 0.41
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (17 bp):
TTTTATTTTTATTTATA
Found at i:23505998 original size:24 final size:25
Alignment explanation
Indices: 23505951--23505999 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
23505941 ATTTTCATGC
*
23505951 CATTTATTATTTATTATTTAATTTA
1 CATTTATTAGTTATTATTTAATTTA
23505976 CATTTATT-GTTATTATCTT-ATTTA
1 CATTTATTAGTTATTAT-TTAATTTA
23506000 TTTATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (25 bp):
CATTTATTAGTTATTATTTAATTTA
Found at i:23507149 original size:26 final size:26
Alignment explanation
Indices: 23507120--23507171 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23507110 ATTTGTGATC
*
23507120 CTTTTCATTTTATTTTATATATGTTG
1 CTTTGCATTTTATTTTATATATGTTG
*
23507146 CTTTGCATTTTATTTTATGTATGTTG
1 CTTTGCATTTTATTTTATATATGTTG
23507172 TATTTGTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.17, C:0.08, G:0.12, T:0.63
Consensus pattern (26 bp):
CTTTGCATTTTATTTTATATATGTTG
Found at i:23513866 original size:51 final size:52
Alignment explanation
Indices: 23513801--23513902 Score: 145
Period size: 51 Copynumber: 2.0 Consensus size: 52
23513791 AAAATAGGGC
* * *
23513801 TTGAGTTGAAAACCT-AAAAGGGCGGCTCAAACTTGC-AAACAAAAAAGAAGT
1 TTGAGTTGAAAACCTGAAAA-GGCAGCTCAAACTAGCAAAAAAAAAAAGAAGT
*
23513852 TTGAGTTGAAAACCTGAAAAGGTAGCTCAAACTAGCAAAAAAAAAAAGAAG
1 TTGAGTTGAAAACCTGAAAAGGCAGCTCAAACTAGCAAAAAAAAAAAGAAG
23513903 AAAAGTAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
51 28 0.62
52 17 0.38
ACGTcount: A:0.49, C:0.14, G:0.21, T:0.17
Consensus pattern (52 bp):
TTGAGTTGAAAACCTGAAAAGGCAGCTCAAACTAGCAAAAAAAAAAAGAAGT
Found at i:23513928 original size:22 final size:20
Alignment explanation
Indices: 23513888--23513954 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
23513878 TCAAACTAGC
*
23513888 AAAAAAAAAAAGAAGAAAAG
1 AAAAAGAAAAAGAAGAAAAG
*
23513908 TAAAAGAAAAAGAGAGAAAAAG
1 AAAAAGAAAAAGA-AG-AAAAG
*
23513930 AAAAAGGAAAAA-AAGGAGAAG
1 AAAAA-GAAAAAGAA-GAAAAG
23513951 AAAA
1 AAAA
23513955 CAAAAAAGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 11 0.28
21 11 0.28
22 11 0.28
23 6 0.15
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (20 bp):
AAAAAGAAAAAGAAGAAAAG
Found at i:23513942 original size:15 final size:16
Alignment explanation
Indices: 23513909--23513944 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
23513899 GAAGAAAAGT
*
23513909 AAAAGAAAAAGAGAGA
1 AAAAGAAAAAGAGAAA
23513925 AAAAGAAAAAG-GAAA
1 AAAAGAAAAAGAGAAA
23513940 AAAAG
1 AAAAG
23513945 GAGAAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAGAGAAA
Found at i:23513943 original size:26 final size:27
Alignment explanation
Indices: 23513914--23513964 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
23513904 AAAGTAAAAG
23513914 AAAAAGAG-AGAAAA-AGAAAAAGGAAA
1 AAAAAGAGAAGAAAACA-AAAAAGGAAA
*
23513940 AAAAGGAGAAGAAAACAAAAAAGGA
1 AAAAAGAGAAGAAAACAAAAAAGGA
23513965 GGGGTCAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 7 0.32
27 14 0.64
28 1 0.05
ACGTcount: A:0.75, C:0.02, G:0.24, T:0.00
Consensus pattern (27 bp):
AAAAAGAGAAGAAAACAAAAAAGGAAA
Found at i:23513961 original size:21 final size:21
Alignment explanation
Indices: 23513887--23513961 Score: 53
Period size: 24 Copynumber: 3.3 Consensus size: 21
23513877 CTCAAACTAG
*
23513887 CAAAAAAAAA-AAGAAGAAAA
1 CAAAAAAAAAGGAGAAGAAAA
* *
23513907 GTAAAAGAAAAAGAGAGAAAAAGAA
1 -CAAAA-AAAAAG-GAGAAGAA-AA
*
23513932 AAAGGAAAAAAAGGAGAAGAAAA
1 CAA--AAAAAAAGGAGAAGAAAA
23513955 CAAAAAA
1 CAAAAAA
23513962 GGAGGGGTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
21 8 0.19
22 5 0.12
23 4 0.10
24 15 0.36
25 8 0.19
26 2 0.05
ACGTcount: A:0.77, C:0.03, G:0.19, T:0.01
Consensus pattern (21 bp):
CAAAAAAAAAGGAGAAGAAAA
Found at i:23515240 original size:147 final size:146
Alignment explanation
Indices: 23514973--23515423 Score: 462
Period size: 147 Copynumber: 3.1 Consensus size: 146
23514963 ATCATAGAGT
* * *
23514973 TTGAAGAGGGATAAGTTGAAGCCGCAACGGCAGACCTAACACCCTAAAATCGAAAAGGGATATAT
1 TTGAAGAGGGATAAGTTGAAGCTGCAACGGCAGACCTAACA-CCTAAAATCGAAGAGGGATAGAT
* * * * * * * *
23515038 TAAAGCCGTAACGGTAAAT-TTAACACCCTAAAATCGAAGAGGGAAAGATTAAAGCCATAACAGT
65 TGAAGCCGCAACGGCAGATCTT-ACACCTTAAAATCGAAGAGGGATAGATTGAAGCCGTAACAGT
* *
23515102 GGATCTTACACCTTAAAA
129 GGACCTAACACCTTAAAA
** * * *
23515120 TTGAAGAGGGATAAGTTGAAGCTGCAACGGTGGACCTAACACGCTAAAATCGAAGAGAGAAAGAC
1 TTGAAGAGGGATAAGTTGAAGCTGCAACGGCAGACCTAACAC-CTAAAATCGAAGAGGGATAGAT
* ** * *
23515185 TGAAGTCGCAACAACGGATCTTACACCTTAAAATCGAAGAGGGATAGATTGAAGCCGTAA-TGAT
65 TGAAGCCGCAACGGCAGATCTTACACCTTAAAATCGAAGAGGGATAGATTGAAGCCGTAACAG-T
*
23515249 TGACCTAACACCTTAAAA
129 GGACCTAACACCTTAAAA
* * * * * * *
23515267 TTGAAGA-GGAAAATATTGAA-TTGCAATGACAGATCTTACACCTTAAAA-CTGAAGAGGGATAG
1 TTGAAGAGGGATAA-GTTGAAGCTGCAACGGCAGACCTAACACC-TAAAATC-GAAGAGGGATAG
* * * * *
23515329 ATTGAAGCCGCAACGGCAGATCTTACACCTTAAAATTGAAGAGGGATAGGTTGAAGTCGCAACGG
63 ATTGAAGCCGCAACGGCAGATCTTACACCTTAAAATCGAAGAGGGATAGATTGAAGCCGTAACAG
* *
23515394 TGAACCTAACACCCTAAAA
128 TGGACCTAACACCTTAAAA
23515413 TTGAAGAGGGA
1 TTGAAGAGGGA
23515424 AAGATTAAAG
Statistics
Matches: 248, Mismatches: 48, Indels: 16
0.79 0.15 0.05
Matches are distributed among these distances:
145 2 0.01
146 112 0.45
147 132 0.53
148 2 0.01
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (146 bp):
TTGAAGAGGGATAAGTTGAAGCTGCAACGGCAGACCTAACACCTAAAATCGAAGAGGGATAGATT
GAAGCCGCAACGGCAGATCTTACACCTTAAAATCGAAGAGGGATAGATTGAAGCCGTAACAGTGG
ACCTAACACCTTAAAA
Found at i:23515435 original size:49 final size:49
Alignment explanation
Indices: 23514973--23515461 Score: 317
Period size: 49 Copynumber: 10.0 Consensus size: 49
23514963 ATCATAGAGT
* *
23514973 TTGAAGAGGGATAAG-TTGAAGCCGCAACGG-CAGACCTAACACCCTAAAA
1 TTGAAGAGGGA-AAGATTGAAGCCGCAACGGTGA-ATCTAACACCCTAAAA
* * * * * * * *
23515022 TCGAAAAGGGATATATTAAAGCCGTAACGGTAAATTTAACACCCTAAAA
1 TTGAAGAGGGAAAGATTGAAGCCGCAACGGTGAATCTAACACCCTAAAA
* * ** * * * *
23515071 TCGAAGAGGGAAAGATTAAAGCCATAACAGTGGATCTTACACCTTAAAA
1 TTGAAGAGGGAAAGATTGAAGCCGCAACGGTGAATCTAACACCCTAAAA
* * * *
23515120 TTGAAGAGGGATAAG-TTGAAGCTGCAACGGTGGACCTAACACGCTAAAA
1 TTGAAGAGGGA-AAGATTGAAGCCGCAACGGTGAATCTAACACCCTAAAA
* * * * *** * * *
23515169 TCGAAGAGAGAAAGACTGAAGTCGCAACAACGGATCTTACACCTTAAAA
1 TTGAAGAGGGAAAGATTGAAGCCGCAACGGTGAATCTAACACCCTAAAA
* * * * * * *
23515218 TCGAAGAGGGATAGATTGAAGCCGTAATGATTG-ACCTAACACCTTAAAA
1 TTGAAGAGGGAAAGATTGAAGCCGCAACG-GTGAATCTAACACCCTAAAA
* * ** * ** * *
23515267 TTGAAGAGGAAAATATTGAA-TTGCAA-TGACAGATCTTACACCTTAAAA
1 TTGAAGAGGGAAAGATTGAAGCCGCAACGGTGA-ATCTAACACCCTAAAA
* * * * *
23515315 CTGAAGAGGGATAGATTGAAGCCGCAACGG-CAGATCTTACACCTTAAAA
1 TTGAAGAGGGAAAGATTGAAGCCGCAACGGTGA-ATCTAACACCCTAAAA
* * * *
23515364 TTGAAGAGGGATAGGTTGAAGTCGCAACGGTGAACCTAACACCCTAAAA
1 TTGAAGAGGGAAAGATTGAAGCCGCAACGGTGAATCTAACACCCTAAAA
* * * * *
23515413 TTGAAGAGGGAAAGATTAAAGTCGTAATGGTGAATCTTACACCCTAAAA
1 TTGAAGAGGGAAAGATTGAAGCCGCAACGGTGAATCTAACACCCTAAAA
23515462 AAACTAAACG
Statistics
Matches: 344, Mismatches: 86, Indels: 20
0.76 0.19 0.04
Matches are distributed among these distances:
48 37 0.11
49 300 0.87
50 7 0.02
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.20
Consensus pattern (49 bp):
TTGAAGAGGGAAAGATTGAAGCCGCAACGGTGAATCTAACACCCTAAAA
Found at i:23515450 original size:98 final size:98
Alignment explanation
Indices: 23514973--23515461 Score: 366
Period size: 98 Copynumber: 5.0 Consensus size: 98
23514963 ATCATAGAGT
* * * * * *
23514973 TTGAAGAGGGATAAG-TTGAAGCCGCAAC-G-GCAGACCTAACACCCTAAAATCGAAAAGGGATA
1 TTGAAGAGGGA-AAGATTGAAGTCGCAACAGTG-A-ATCTTACACCTTAAAATTGAAGAGGGATA
* * *
23515035 TATTAAAGCCGTAACGGTAAAT-TTAACACCCTAAAA
63 GATTGAAGCCGTAACGGTGAATCTT-ACACCCTAAAA
* * * ** *
23515071 TCGAAGAGGGAAAGATTAAAGCCATAACAGTGGATCTTACACCTTAAAATTGAAGAGGGATA-AG
1 TTGAAGAGGGAAAGATTGAAGTCGCAACAGTGAATCTTACACCTTAAAATTGAAGAGGGATAGA-
* * * * * *
23515135 TTGAAGCTGCAACGGTGGACCTAACACGCTAAAA
65 TTGAAGCCGTAACGGTGAATCTTACACCCTAAAA
* * * ** * *
23515169 TCGAAGAGAGAAAGACTGAAGTCGCAACAACGGATCTTACACCTTAAAATCGAAGAGGGATAGAT
1 TTGAAGAGGGAAAGATTGAAGTCGCAACAGTGAATCTTACACCTTAAAATTGAAGAGGGATAGAT
* * * * *
23515234 TGAAGCCGTAATGATTG-ACCTAACACCTTAAAA
66 TGAAGCCGTAACG-GTGAATCTTACACCCTAAAA
* * * * ** *
23515267 TTGAAGAGGAAAATATTGAA-TTGCAA-TGACAGATCTTACACCTTAAAACTGAAGAGGGATAGA
1 TTGAAGAGGGAAAGATTGAAGTCGCAACAGTGA-ATCTTACACCTTAAAATTGAAGAGGGATAGA
* * *
23515330 TTGAAGCCGCAACGG-CAGATCTTACACCTTAAAA
65 TTGAAGCCGTAACGGTGA-ATCTTACACCCTAAAA
* * * * * * *
23515364 TTGAAGAGGGATAGGTTGAAGTCGCAACGGTGAACCTAACACCCTAAAATTGAAGAGGGAAAGAT
1 TTGAAGAGGGAAAGATTGAAGTCGCAACAGTGAATCTTACACCTTAAAATTGAAGAGGGATAGAT
* * *
23515429 TAAAGTCGTAATGGTGAATCTTACACCCTAAAA
66 TGAAGCCGTAACGGTGAATCTTACACCCTAAAA
23515462 AAACTAAACG
Statistics
Matches: 307, Mismatches: 71, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
97 80 0.26
98 218 0.71
99 8 0.03
100 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.20
Consensus pattern (98 bp):
TTGAAGAGGGAAAGATTGAAGTCGCAACAGTGAATCTTACACCTTAAAATTGAAGAGGGATAGAT
TGAAGCCGTAACGGTGAATCTTACACCCTAAAA
Found at i:23515553 original size:45 final size:45
Alignment explanation
Indices: 23515486--23516039 Score: 581
Period size: 45 Copynumber: 12.5 Consensus size: 45
23515476 AAAGTCACCA
* * * *
23515486 CATCTAATATTTTACCCCTAATCTAGAGGGGCAAATTGAACCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
* *
23515531 CATCCAATCTTTTGCCCCTAATCTAGAGGGGTAGATTGAAGCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
* * *
23515576 CATCCAATCTTTTACCCTTAATCCAGAGGGGCAGATTGAAGTCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
* * *
23515621 CATCCAATCTTTTACCCTTAATCTAAAGGGGCAGATTGAAGCTAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
* * * *** *
23515666 CATCCAATCTTTTACTCCTAATCTAGAAGGGCAAATTGAAATAAT
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
* * *
23515711 CATCTAATTTTTTACCCCTAATCTATAGGGGCAGATTGAAGCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
* * *
23515756 CATCCAATCTTTTACCCCTAATCCAAAGGGGCAGATTGAAG-CAGT
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCA-C
* * * *
23515801 CATCCAGTCTTTTACCCCTAATTTA-AGGGGCAAATTGAAGTCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
* * * *
23515845 CATCAAATCTTTTACCTCTAATCTATAGGGG-AGGATTGAAGCAAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCA-GATTGAAGCCAC
* * * *
23515890 CATCCAGTCCTTTACCCGTAACCTAGAGGGGCAGATTGAAGCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
* * * * *
23515935 CATTCAGTCTTTTACCCTTAATC--------CAAATTAAAGCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
* * *
23515972 CATCCAATCTTTTACCCCTAATCCAGAGGGGAAGATTGAAGTCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
*
23516017 CAAATCCAATCTTTTATCCCTAA
1 C--ATCCAATCTTTTACCCCTAA
23516040 ATCCAAGGGC
Statistics
Matches: 421, Mismatches: 73, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
37 32 0.08
44 38 0.09
45 331 0.79
46 1 0.00
47 19 0.05
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (45 bp):
CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
Found at i:23521211 original size:217 final size:218
Alignment explanation
Indices: 23520812--23521225 Score: 634
Period size: 217 Copynumber: 1.9 Consensus size: 218
23520802 CAAGTTGCTA
* * * *
23520812 GAGTGAATGAAGTAGACGCCCTCGCTTCACTCTCAGCTCAAGTATCATCTATCTCTTCAATGTTG
1 GAGTGAATGAAGTAGACACCCTCACTTCACTCTCACCTCAAGTATCATCTATCCCTTCAATGTTG
* * * * * *
23520877 AAATAGTTTACTATTAACAGTTTAAATCATGTTGTAGCTCAGCCACCAATCCACTACCAAGGAGA
66 AAACAATTTACTACTAACAGATTAAATAATGTTGCAGCTCAGCCACCAATCCACTACCAAGGAGA
* *
23520942 TGGACCGAAGAACAATTACATGCAACATAGATTAAATCAACCTCTTGGTTTCAATCAACAAGTTC
131 TGGACCGAACAACAATTACATGCAACATAGATCAAATCAACCTCTTGGTTTCAATCAACAAGTTC
23521007 AACTTCAGGAAGACAAGCAGCCG
196 AACTTCAGGAAGACAAGCAGCCG
* * *
23521030 GAGTGCATGAA-TAGGCACCCTCACTTCACTCTCACCTCAAGTATCCTCTATCCCTTCAATGTTG
1 GAGTGAATGAAGTAGACACCCTCACTTCACTCTCACCTCAAGTATCATCTATCCCTTCAATGTTG
* *
23521094 AAACAATTTACTACTAAC-GAATTAAATAATGTTGCAGCTTAGCCACCAATCCATTACCAAGGAG
66 AAACAATTTACTACTAACAG-ATTAAATAATGTTGCAGCTCAGCCACCAATCCACTACCAAGGAG
* *
23521158 GTGGACCGAACAACAATTACATGCAGCATAGATCAAATCAACCTCTTGGTTTCAATCAACAAGTT
130 ATGGACCGAACAACAATTACATGCAACATAGATCAAATCAACCTCTTGGTTTCAATCAACAAGTT
23521223 CAA
195 CAA
23521226 TAGTCCCTAT
Statistics
Matches: 176, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
216 1 0.01
217 165 0.94
218 10 0.06
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (218 bp):
GAGTGAATGAAGTAGACACCCTCACTTCACTCTCACCTCAAGTATCATCTATCCCTTCAATGTTG
AAACAATTTACTACTAACAGATTAAATAATGTTGCAGCTCAGCCACCAATCCACTACCAAGGAGA
TGGACCGAACAACAATTACATGCAACATAGATCAAATCAACCTCTTGGTTTCAATCAACAAGTTC
AACTTCAGGAAGACAAGCAGCCG
Found at i:23528117 original size:6 final size:6
Alignment explanation
Indices: 23528092--23528136 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
23528082 ACAATACATA
* * *
23528092 TCACTT TCAATT CCAATT TCACTT TCACTT TCACTT TCACTT TCA
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA
23528137 ATTTTGATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (6 bp):
TCACTT
Found at i:23536330 original size:11 final size:11
Alignment explanation
Indices: 23536314--23536338 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23536304 CATGCAGGTT
23536314 TTTATAAAAGA
1 TTTATAAAAGA
23536325 TTTATAAAAGA
1 TTTATAAAAGA
23536336 TTT
1 TTT
23536339 TTCAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTATAAAAGA
Found at i:23540440 original size:9 final size:9
Alignment explanation
Indices: 23540426--23540454 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
23540416 GTAAATGATT
23540426 TTAAAATTA
1 TTAAAATTA
23540435 TTAAAATTA
1 TTAAAATTA
23540444 TTAAAATTA
1 TTAAAATTA
23540453 TT
1 TT
23540455 TTAAAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
TTAAAATTA
Found at i:23540450 original size:29 final size:27
Alignment explanation
Indices: 23540418--23540472 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 27
23540408 CCATGTCAGT
*
23540418 AAATGATTTTAAAATTATTAAAATTATTA
1 AAATGATTTTAAAA--AATAAAATTATTA
*
23540447 AAATTATTTTAAAAAATAAAATTATT
1 AAATGATTTTAAAAAATAAAATTATT
23540473 TTAAAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 11 0.46
29 13 0.54
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (27 bp):
AAATGATTTTAAAAAATAAAATTATTA
Found at i:23544825 original size:3 final size:3
Alignment explanation
Indices: 23544817--23544846 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
23544807 AGGAAAATTT
23544817 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
23544847 AGATATCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:23545554 original size:28 final size:28
Alignment explanation
Indices: 23545512--23545730 Score: 262
Period size: 28 Copynumber: 7.8 Consensus size: 28
23545502 ATTGTTGATG
23545512 TCAATGAAAAGGGATATCCGTAAGGATA
1 TCAATGAAAAGGGATATCCGTAAGGATA
*
23545540 TCAATGTAAAA-GGATATCTGTAAGGATA
1 TCAATG-AAAAGGGATATCCGTAAGGATA
* * *
23545568 TCAAAG-AAAGGGATATTCGTAAGGATG
1 TCAATGAAAAGGGATATCCGTAAGGATA
** * *
23545595 TCAACAAAAAGGAATATCCGTAAGGATG
1 TCAATGAAAAGGGATATCCGTAAGGATA
*
23545623 TCAATGAAAAGGGATATCCGTAAGGATG
1 TCAATGAAAAGGGATATCCGTAAGGATA
* * *
23545651 TTAACGAAAAGGGATATCCGTAAGGGTA
1 TCAATGAAAAGGGATATCCGTAAGGATA
* *
23545679 TCGATGAAAAGGGATATCCATAAGGATA
1 TCAATGAAAAGGGATATCCGTAAGGATA
* *
23545707 TCAATGAAAAAGGTATATTCGTAA
1 TCAATG-AAAAGGGATATCCGTAA
23545731 TAAATACATT
Statistics
Matches: 162, Mismatches: 25, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
26 3 0.02
27 18 0.11
28 123 0.76
29 18 0.11
ACGTcount: A:0.42, C:0.10, G:0.25, T:0.23
Consensus pattern (28 bp):
TCAATGAAAAGGGATATCCGTAAGGATA
Found at i:23546509 original size:31 final size:31
Alignment explanation
Indices: 23546471--23546538 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
23546461 ATGGGCAGAA
*
23546471 ACATGGGCATGTGGCCCAAGTTCGA-ATAGAC
1 ACATGGGCATGTGGCCCAAG-TCAATATAGAC
23546502 ACATGGGCATGTGGCCCAAGTCAATATAGAC
1 ACATGGGCATGTGGCCCAAGTCAATATAGAC
23546533 ACATGG
1 ACATGG
23546539 TCTAGCACAG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
30 3 0.09
31 32 0.91
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (31 bp):
ACATGGGCATGTGGCCCAAGTCAATATAGAC
Found at i:23548164 original size:13 final size:14
Alignment explanation
Indices: 23548135--23548181 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 14
23548125 AGTTCAAAAC
*
23548135 AAATAAAATATTAA
1 AAATAAAATAATAA
23548149 AAATAAAA-AATAA
1 AAATAAAATAATAA
23548162 AAATATTAAATAATATA
1 AAATA--AAATAATA-A
23548179 AAA
1 AAA
23548182 GTTGATTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 9 0.32
14 8 0.29
15 3 0.11
16 4 0.14
17 4 0.14
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATAAAATAATAA
Found at i:23548167 original size:22 final size:22
Alignment explanation
Indices: 23548135--23548181 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
23548125 AGTTCAAAAC
23548135 AAATAAAATATTAAA-AATAAA
1 AAATAAAATATTAAATAATAAA
*
23548156 AAATAAAAATATTAAATAATATA
1 AAAT-AAAATATTAAATAATAAA
23548179 AAA
1 AAA
23548182 GTTGATTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.17
22 11 0.48
23 8 0.35
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (22 bp):
AAATAAAATATTAAATAATAAA
Found at i:23548385 original size:19 final size:19
Alignment explanation
Indices: 23548331--23548396 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
23548321 GACAACATTG
* *
23548331 AATTTTGAAT-TTTTTTAT
1 AATTTTAAATATTTTTTTT
* **
23548349 ATATTTAAAATAAATTTTTT
1 A-ATTTTAAATATTTTTTTT
23548369 AATTTTAAATATTTTTTTCAT
1 AATTTTAAATATTTTTTT--T
23548390 AATTTTA
1 AATTTTA
23548397 GATTTTTAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
18 1 0.03
19 21 0.58
20 6 0.17
21 8 0.22
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (19 bp):
AATTTTAAATATTTTTTTT
Found at i:23548394 original size:21 final size:20
Alignment explanation
Indices: 23548339--23548396 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
23548329 TGAATTTTGA
*
23548339 ATTTTTTTATATATTTAAAAT
1 ATTTTTTTATA-ATTTTAAAT
**
23548360 AAATTTTT-TAATTTTAAAT
1 ATTTTTTTATAATTTTAAAT
23548379 ATTTTTTTCATAATTTTA
1 ATTTTTTT-ATAATTTTA
23548397 GATTTTTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
19 14 0.47
20 2 0.07
21 14 0.47
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTTTTTATAATTTTAAAT
Found at i:23551947 original size:15 final size:15
Alignment explanation
Indices: 23551927--23551978 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
23551917 TATTCAATTT
23551927 AATATTTTAATAATA
1 AATATTTTAATAATA
*
23551942 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
23551961 AATATATTAATAATA
1 AATATTTTAATAATA
23551976 AAT
1 AAT
23551979 GTGTTGTAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 13 0.43
16 2 0.07
17 4 0.13
18 1 0.03
19 10 0.33
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:23553261 original size:19 final size:19
Alignment explanation
Indices: 23553219--23553261 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
23553209 TATTTCATTG
* *
23553219 TATTTGATCTTTTGCAAAC
1 TATTTGATCTTGTACAAAC
* *
23553238 AATTTGATCTTGTACAAAT
1 TATTTGATCTTGTACAAAC
23553257 TATTT
1 TATTT
23553262 TTTTGTTTGC
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (19 bp):
TATTTGATCTTGTACAAAC
Found at i:23559084 original size:56 final size:57
Alignment explanation
Indices: 23558999--23559125 Score: 186
Period size: 56 Copynumber: 2.3 Consensus size: 57
23558989 TGAGCCCAGA
* * * *
23558999 AAAAAAAAAGAGAGAAAATGGGTGTTTGGAAAGAGAGAAAGTTTGAGAAAATAT-GG
1 AAAAATAATGAGAAAAAATGGGTGTTTGGAAAGAGAGAAAGTCTGAGAAAATATAGG
*
23559055 AAAAATAATGAGAAAAAATGGGTGTTTGGAAAGAGAGAAAGTCTGAGAAAATTTAGG
1 AAAAATAATGAGAAAAAATGGGTGTTTGGAAAGAGAGAAAGTCTGAGAAAATATAGG
*
23559112 -AAAATAATTAGAAA
1 AAAAATAATGAGAAA
23559126 GGAAGAGAAG
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
56 62 0.97
57 2 0.03
ACGTcount: A:0.53, C:0.01, G:0.27, T:0.20
Consensus pattern (57 bp):
AAAAATAATGAGAAAAAATGGGTGTTTGGAAAGAGAGAAAGTCTGAGAAAATATAGG
Found at i:23559492 original size:56 final size:56
Alignment explanation
Indices: 23559412--23559537 Score: 168
Period size: 56 Copynumber: 2.3 Consensus size: 56
23559402 CTGGAAAAAA
* *
23559412 GAAAA-AATGAGAGAAAATGTGTGTTTGGAAAGAGAGAAAGTTTAAGAAAATAT-G
1 GAAAATAATGAGAAAAAATGTGTGTTTGGAAAGAGAGAAAGTCTAAGAAAATATGG
* *
23559466 GAAATATAATGAGAAAAAATAG-GTGTTTGGAAAGAGAGAAAGTCTGAGAAAATTTGG
1 GAAA-ATAATGAGAAAAAAT-GTGTGTTTGGAAAGAGAGAAAGTCTAAGAAAATATGG
*
23559523 GAAAATAATTAGAAA
1 GAAAATAATGAGAAA
23559538 GGAAGAGAAG
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
54 4 0.06
55 1 0.02
56 52 0.83
57 6 0.10
ACGTcount: A:0.51, C:0.01, G:0.26, T:0.22
Consensus pattern (56 bp):
GAAAATAATGAGAAAAAATGTGTGTTTGGAAAGAGAGAAAGTCTAAGAAAATATGG
Found at i:23569002 original size:21 final size:21
Alignment explanation
Indices: 23568976--23569016 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
23568966 GTTTTTAGTA
*
23568976 TCGGTAGAAGCATGACTTGTT
1 TCGGTAGAAGCATCACTTGTT
*
23568997 TCGGTAGAAGTATCACTTGT
1 TCGGTAGAAGCATCACTTGT
23569017 ACCGGTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (21 bp):
TCGGTAGAAGCATCACTTGTT
Found at i:23569022 original size:21 final size:21
Alignment explanation
Indices: 23568977--23569023 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
23568967 TTTTTAGTAT
* **
23568977 CGGTAGAAGCATGACTTGTTT
1 CGGTAGAAGCATCACTTGTAC
*
23568998 CGGTAGAAGTATCACTTGTAC
1 CGGTAGAAGCATCACTTGTAC
23569019 CGGTA
1 CGGTA
23569024 AAACTGTCAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (21 bp):
CGGTAGAAGCATCACTTGTAC
Found at i:23572882 original size:5 final size:5
Alignment explanation
Indices: 23572872--23572905 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
23572862 GTACATATGC
*
23572872 TCTTT TCTTT TCTTTT TCTTT TTTTT TCTTT TCT
1 TCTTT TCTTT TC-TTT TCTTT TCTTT TCTTT TCT
23572906 GTTATTCTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TCTTT
Found at i:23572893 original size:16 final size:16
Alignment explanation
Indices: 23572872--23572903 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23572862 GTACATATGC
23572872 TCTTTTCTTTTCTTTT
1 TCTTTTCTTTTCTTTT
*
23572888 TCTTTTTTTTTCTTTT
1 TCTTTTCTTTTCTTTT
23572904 CTGTTATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TCTTTTCTTTTCTTTT
Found at i:23574161 original size:18 final size:18
Alignment explanation
Indices: 23574140--23574180 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
23574130 CTCCACAAGA
*
23574140 TCTTCCTCAGGATCCTCT
1 TCTTCCTCAAGATCCTCT
* *
23574158 TCTTCTTCAAGATCTTCT
1 TCTTCCTCAAGATCCTCT
23574176 TCTTC
1 TCTTC
23574181 AGCTTGATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.12, C:0.34, G:0.07, T:0.46
Consensus pattern (18 bp):
TCTTCCTCAAGATCCTCT
Found at i:23581414 original size:21 final size:21
Alignment explanation
Indices: 23581390--23581429 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23581380 AAACTCTAAC
*
23581390 TTTACCAGAACCAGAACCAAT
1 TTTACCAAAACCAGAACCAAT
*
23581411 TTTACCAAAATCAGAACCA
1 TTTACCAAAACCAGAACCA
23581430 GAACCGGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.28, G:0.07, T:0.20
Consensus pattern (21 bp):
TTTACCAAAACCAGAACCAAT
Found at i:23592446 original size:6 final size:6
Alignment explanation
Indices: 23592401--23592443 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
23592391 GGTCCTATGC
23592401 ATTGTT ATTGTT ATTGTT ATTGTT ATTGTT ATT-TT ATT-TT ATT
1 ATTGTT ATTGTT ATTGTT ATTGTT ATTGTT ATTGTT ATTGTT ATT
23592444 TTTTAATTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 10 0.27
6 27 0.73
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.70
Consensus pattern (6 bp):
ATTGTT
Found at i:23593788 original size:34 final size:34
Alignment explanation
Indices: 23593750--23593829 Score: 81
Period size: 34 Copynumber: 2.4 Consensus size: 34
23593740 TTCTAATCAA
*
23593750 ATATATCTTTCT-GAAATTATGACAGTCTGATATG
1 ATATATATTTCTGGAAA-TATGACAGTCTGATATG
* * * * * *
23593784 ATATATGTATCTGGAAATATGTCATTTTGATCTG
1 ATATATATTTCTGGAAATATGACAGTCTGATATG
23593818 ATATATATTTCT
1 ATATATATTTCT
23593830 ATTTATATGA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
34 33 0.89
35 4 0.11
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (34 bp):
ATATATATTTCTGGAAATATGACAGTCTGATATG
Found at i:23594314 original size:24 final size:24
Alignment explanation
Indices: 23594282--23594332 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
23594272 AGAAACAGTC
23594282 TTTCAATTAAACTCTATTTATTTG
1 TTTCAATTAAACTCTATTTATTTG
* *
23594306 TTTCTATTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTATTTATTTG
23594330 TTT
1 TTT
23594333 GAGTCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.06, T:0.59
Consensus pattern (24 bp):
TTTCAATTAAACTCTATTTATTTG
Done.