Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 81 of 132
Found at i:23893793 original size:11 final size:11
Alignment explanation
Indices: 23893779--23893863 Score: 52
Period size: 11 Copynumber: 7.7 Consensus size: 11
23893769 GAGTGAGAAT
23893779 GAAAAAGAAAA
1 GAAAAAGAAAA
**
23893790 G-AAAAGTGAA
1 GAAAAAGAAAA
*
23893800 -AAAAAG-AAG
1 GAAAAAGAAAA
*
23893809 GAAAAATG-AGA
1 GAAAAA-GAAAA
23893820 GAAAAGAGAAAA
1 GAAAA-AGAAAA
**
23893832 GAAAGTGAAAA
1 GAAAAAGAAAA
23893843 GAAAGAGAGAAAA
1 GAAA-A-AGAAAA
23893856 GAAAAAGA
1 GAAAAAGA
23893864 TGAAAAGGAA
Statistics
Matches: 56, Mismatches: 11, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
9 1 0.02
10 17 0.30
11 21 0.38
12 8 0.14
13 9 0.16
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.04
Consensus pattern (11 bp):
GAAAAAGAAAA
Found at i:23893813 original size:30 final size:31
Alignment explanation
Indices: 23893774--23893836 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
23893764 GAAAAGAGTG
* *
23893774 AGAATGAAAAA-GAAAAGAAAAGTGAAAA-AA
1 AGAAGGAAAAATG-AAAGAAAAGAGAAAAGAA
*
23893804 AGAAGGAAAAATGAGAGAAAAGAGAAAAGAA
1 AGAAGGAAAAATGAAAGAAAAGAGAAAAGAA
23893835 AG
1 AG
23893837 TGAAAAGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 23 0.82
31 5 0.18
ACGTcount: A:0.70, C:0.00, G:0.25, T:0.05
Consensus pattern (31 bp):
AGAAGGAAAAATGAAAGAAAAGAGAAAAGAA
Found at i:23893841 original size:29 final size:29
Alignment explanation
Indices: 23893800--23893863 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 29
23893790 GAAAAGTGAA
*
23893800 AAAAAG-AAGG-AAA-AATGAGAGAAAAG
1 AAAAAGAAAGGAAAAGAAAGAGAGAAAAG
23893826 AGAAAAGAAAGTGAAAAGAAAGAGAGAAAAG
1 A-AAAAGAAAG-GAAAAGAAAGAGAGAAAAG
23893857 AAAAAGA
1 AAAAAGA
23893864 TGAAAAGGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 1 0.03
27 5 0.16
28 3 0.09
29 1 0.03
30 9 0.28
31 13 0.41
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (29 bp):
AAAAAGAAAGGAAAAGAAAGAGAGAAAAG
Found at i:23893856 original size:13 final size:12
Alignment explanation
Indices: 23893819--23893870 Score: 61
Period size: 13 Copynumber: 4.2 Consensus size: 12
23893809 GAAAAATGAG
23893819 AGAAAAGAGAAA
1 AGAAAAGAGAAA
*
23893831 AG-AAAGTGAAA
1 AGAAAAGAGAAA
23893842 AGAAAGAGAGAAA
1 AGAAA-AGAGAAA
23893855 AGAAAAAGATGAAA
1 AG-AAAAGA-GAAA
23893869 AG
1 AG
23893871 GAAGAAAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.29
12 4 0.12
13 11 0.32
14 9 0.26
ACGTcount: A:0.69, C:0.00, G:0.27, T:0.04
Consensus pattern (12 bp):
AGAAAAGAGAAA
Found at i:23893875 original size:27 final size:24
Alignment explanation
Indices: 23893784--23893859 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
23893774 AGAATGAAAA
23893784 AGAAAAGAAAAGTGAAAA-AAAGA-
1 AGAAAAG-AAAGTGAAAAGAAAGAG
* *
23893807 AG-GAA-AAA-TG-AGAGAAA-AG
1 AGAAAAGAAAGTGAAAAGAAAGAG
23893826 AGAAAAGAAAGTGAAAAGAAAGAG
1 AGAAAAGAAAGTGAAAAGAAAGAG
23893850 AGAAAAGAAA
1 AGAAAAGAAA
23893860 AAGATGAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
18 3 0.07
19 7 0.17
20 5 0.12
21 3 0.07
22 4 0.10
23 8 0.19
24 12 0.29
ACGTcount: A:0.70, C:0.00, G:0.26, T:0.04
Consensus pattern (24 bp):
AGAAAAGAAAGTGAAAAGAAAGAG
Found at i:23895106 original size:160 final size:159
Alignment explanation
Indices: 23894837--23895147 Score: 408
Period size: 160 Copynumber: 1.9 Consensus size: 159
23894827 GGGAGGAATG
* * *
23894837 GATCATCTTGAATACTTTAAGGAATAAAAGTTATAAAAGAACTCATAAAAGTTTGTCAAGTTCGG
1 GATCATCTTGAATAATTTAAGGAACAAAAGTTAAAAAAGAACTCATAAAAGTTTGTCAAGTTCGG
* * * * *
23894902 AAGTTCGGTCGAGAACCTAGAAAGAAACAATTCTTACATAAATAAGTTATTATTAATTCAAAGAC
66 AAGTTCGGCCCAGAACCTAGAAAGAAACAATTATCACATAAATAAGTT-TT-TCAATTCAAAGAC
23894967 CAAAAG-TTGTTTACAAAATGACCACGTATA
129 CAAAAGTTTGTTTACAAAATGACCACGTATA
* ** * * * * *
23894997 GATCATCTTGAATAATTTAAGGGACCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTTGG
1 GATCATCTTGAATAATTTAAGGAACAAAAGTTAAAAAAGAACTCATAAAAGTTTGTCAAGTTCGG
* * *
23895062 AAGTTCGGCCCAGAACCTAGAGAGAAACTATTATCACCTAAATAAGTTTTTCAATTCAAAGACCA
66 AAGTTCGGCCCAGAACCTAGAAAGAAACAATTATCACATAAATAAGTTTTTCAATTCAAAGACCA
* *
23895127 AAAGTTTTTTTATAAAATGAC
131 AAAGTTTGTTTACAAAATGAC
23895148 AACTATTTAG
Statistics
Matches: 129, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 18 0.14
159 16 0.12
160 95 0.74
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (159 bp):
GATCATCTTGAATAATTTAAGGAACAAAAGTTAAAAAAGAACTCATAAAAGTTTGTCAAGTTCGG
AAGTTCGGCCCAGAACCTAGAAAGAAACAATTATCACATAAATAAGTTTTTCAATTCAAAGACCA
AAAGTTTGTTTACAAAATGACCACGTATA
Found at i:23895630 original size:214 final size:213
Alignment explanation
Indices: 23894997--23906726 Score: 9734
Period size: 215 Copynumber: 55.4 Consensus size: 213
23894987 ACCACGTATA
* * * * * * * * *
23894997 GATCATCTTGAATAATTTAAGGGACCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTGAAGTTTGG
1 GATCGTCTTGAATACTTTAA-GGAACAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG-TTCG
* * * * *
23895062 AAGTTCGGCCCAGAACCTAGAGAGAAACT-ATTATCACCTAAATAAGTTTTTCAATTCAAAGACC
64 AAGTTCGACCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTT-AATTCAAAGACC
* * * * * * *
23895126 AAAAGTTTTTTTATAAAATGACAACTATTTAGACCAAATAATGCAATTTCCTGAGCTTGGAATGT
127 AAAAG-TTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGT
*
23895191 TCAGAAAATTGCTCGAAGGTATG
191 TCAGAAAATTGCTCGAAGGAATG
* * * *
23895214 GATGGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTTAACTTCGA
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
*
23895279 AAGTTC-AGCCTAGAACCAAAAGAGAAACT-ATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
64 AAGTTCGA-CCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * * ** *
23895342 AAAAGTTGTTTACAAAATTACAACTATTTAGACCAAATTAAGCAATTTGTCGAGCATGGAATGCT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTT
* *
23895407 C-GAAAAATTGCTCAAAAGAATG
192 CAG-AAAATTGCTCGAAGGAATG
* * * *
23895429 GATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTTTCAGGTTCGT
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA
* *
23895494 AGTTCGGCCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTGGAAA-ACCAA
65 AGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATT-CAAAGACCAA
* * * *
23895558 AAGTAGTTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTCCCAAGCAT-GAACTGTAC
129 AAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAA-TGTTC
23895622 AGAAAATTGCTCGAAGGAATG
193 AGAAAATTGCTCGAAGGAATG
* * * * * * **
23895643 GATCATCTTGAATACTTTAATGAACAAAATTTATAAAATAACTTGTAAAAGTTTATCAAGTTTAA
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA
* * * * * * *
23895708 AGTTCGTCCGAGAA-CAAAGAAAGAAACAATTCTCACAC-AAAGAATTTTTTGATTCAAAGATCA
65 AGTTCGACCGAGAACCAAA-AGAGAAATAATTCTCAC-CTAAATAAGTTTTTAATTCAAAGACCA
** *
23895771 AAAGTTGTTT-----A--A-AA--A--T-G-----ATGA---GATTTCCTAAGCTTGGAATGTTC
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTC
*
23895815 AGAAAATTGCTCGAAAGAATG
193 AGAAAATTGCTCGAAGGAATG
* * *
23895836 GGTCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAG
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * * *
23895901 AAGTTCGGCCTACAACCAAGAGAGAAACT-ATTCTCACCCAAATAAGTTTTTAAATTCAAAGACC
64 AAGTTCGACCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTT-AATTCAAAGACC
* * * *** *
23895965 ATAAGTTGTTTACAAAATGAAAACTATTTAGA-CTAAATGATGCAATTTTTTGAGCATGGAATAT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCT-AATGATGCGATTTCCCGAGCATGGAATGT
**
23896029 TCTTAAAATTGCTCGAAGGAATG
191 TCAGAAAATTGCTCGAAGGAATG
* * * *
23896052 GATCATCTTGAATAGTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGG
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
** * *
23896117 AAGTTCGGTCGAGAACCAAAAGAGAAACAGTTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
64 AAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
23896182 AAGTAGTTTACAAAATGACAACTATTTAGACCTAATAATGTC-ATTTCCCAAGCATGGACTGTAT
129 AAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATG-CGATTTCCCGAGCATGGAATGT-T
*
23896246 -GGAAAATTGCTCGAAGGAATG
192 CAGAAAATTGCTCGAAGGAATG
* * * *
23896267 GATCGTCTTAAATACTTTAATGAACAAAAGTTATAAAAGAACTCGTTAAAGTTTGTCAATTTCGG
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * * * *
23896332 ATGTTCGACCGAGAA-CAAAGAAAGAAACAATTCTAACATAAATAA---CTT--TT---------
64 AAGTTCGACCGAGAACCAAA-AGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* * * *
23896382 ----TT-TTTACAAAATGACAATCTATTTAGA-ATAATTCATGCGATTTCTCGAGCATGGAATAT
128 AAAGTTGTTTACAAAATGACAA-CTATTTAGACCTAA-TGATGCGATTTCCCGAGCATGGAATGT
* *
23896441 TGC-GAAAATTACTTGAAGGAATG
191 T-CAGAAAATTGCTCGAAGGAATG
* * * *
23896464 GATCATCTTGAATTCTTTAAGGAACATAAGTTAAAAAAGAACTCGTAAAAGTTTGCCAAGTTCAG
1 GATCGTCTTGAATACTTTAAGGAACA-AAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
*
23896529 AAGTTCGACTGAGAACCAATAA-AGAAACT-ATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
64 AAGTTCGACCGAGAACCAA-AAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * * * * *
23896592 AAAAGTTGTTTACAAAATTACAACTATTTAGACCAAATTAAGCAATTTCTCAAGCATGGAATGCT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTT
* *
23896657 C-GAAAAATTGCTCAAAAGAATG
192 CAG-AAAATTGCTCGAAGGAATG
* * * *
23896679 GATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTTTCAGGTTCGT
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA
* *
23896744 AGTTCGATCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTGGAAA-ACCAA
65 AGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATT-CAAAGACCAA
* * * *
23896808 AAGTAGTTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTCCCAAGCAT-GAACTGTAC
129 AAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAA-TGTTC
23896872 AGAAAATTGCTCGAAGGAATG
193 AGAAAATTGCTCGAAGGAATG
* * * * * **
23896893 GATCGTCTTGAATACTTTAATGAACAAAATTTATAAAATAACTTGTAAAAGTTTATCAAGTTTAA
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA
* * * * * * *
23896958 AGTTCGTCCGAGAA-CAAAGAAAGAAACAATTCTCACAC-AAAGAATTTTTTGATTCAAAGATCA
65 AGTTCGACCGAGAACCAAA-AGAGAAATAATTCTCAC-CTAAATAAGTTTTTAATTCAAAGACCA
** *
23897021 AAAGTTGTTT-----A--A-AA--A--T-G-----ATGA---GATTTCCTAAGCTTGGAATGTTC
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTC
*
23897065 AGAAAATTGCTCGAAAGAATG
193 AGAAAATTGCTCGAAGGAATG
* * *
23897086 GGTCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCAG
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * * *
23897151 AAGTTCGGCCTACAACCAAGAGAGAAACT-ATTCTCACCCAAATAAGTTTTTAAATTCAAAGACC
64 AAGTTCGACCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTT-AATTCAAAGACC
* * * *** *
23897215 ATAAGTTGTTTACAAAATGAAAACTATTTAGA-CTAAATGATGCAATTTTTTGAGCATGGAATAT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCT-AATGATGCGATTTCCCGAGCATGGAATGT
**
23897279 TCTTAAAATTGCTCGAAGGAATG
191 TCAGAAAATTGCTCGAAGGAATG
* * * *
23897302 GATCATCTTGAATAGTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGG
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * *
23897367 AAGTTCGGCCGAGAACCAAAAGAGAAACAGTTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
64 AAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
23897432 AAGTAGTTTACAAAATGACAACTATTTAGACCTAATAATGTC-ATTTCCCAAGCATGGACTGTAT
129 AAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATG-CGATTTCCCGAGCATGGAATGT-T
*
23897496 -GGAAAATTGCTCGAAGGAATG
192 CAGAAAATTGCTCGAAGGAATG
* * * *
23897517 GATCGTCTTAAATACTTTAATGAACAAAAGTTATAAAAGAACTCGTTAAAGTTTGTCAATTTCGG
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * * * * *
23897582 ATGTTCGACTGAGAA-CAAAGAAAGAAACAATTCTAACATAAATAA--CTTT--TT---------
64 AAGTTCGACCGAGAACCAAA-AGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* * * *
23897633 ----TT-TTTACAAAATGACAATCTATTTAGA-ATAATTCATGCGATTTCTCGAGCATGGAATAT
128 AAAGTTGTTTACAAAATGACAA-CTATTTAGACCTAA-TGATGCGATTTCCCGAGCATGGAATGT
* *
23897692 TGCA-AAAATTACTTGAAGGAATG
191 T-CAGAAAATTGCTCGAAGGAATG
* * * *
23897715 GATCATCTTGAATTCTTTAAGGAACATAAGTTAAAAAAGAACTCGTAAAAGTTTGCCAAGTTCAG
1 GATCGTCTTGAATACTTTAAGGAACA-AAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * *
23897780 AAGTTTGACTGAGAACCAATAA-AGAAACT-ATTATCATCTAAATAAGTTTTTAATTCAAAGACC
64 AAGTTCGACCGAGAACCAA-AAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * * ** *
23897843 AAAAGTTGTTTATAAAATGACAATTATTTAGACCAAATGGTTCGATTTCTTGAGCTTGGAATGTT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTT
**
23897908 CAGGGAATTGCTCGAAGGAATG
192 CAGAAAATTGCTCGAAGGAATG
* * * *
23897930 GATCATCTTGAATACTTTAAGGAATCAAAGTTATAAAAGAAATTGTAAAAGTTTGTCAACTTCGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * * * * *
23897995 AAGTTCGGCCGTGAACCAAGAGAGGAATTACTT-TCACCAAAATAAGTTTTTAATTCAAAGACCA
64 AAGTTCGACCGAGAACCAAAAGA-GAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* * * * *
23898059 AAATTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGTTC
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTC
*
23898124 AAAAAATTGCTCGAAGGAATG
193 AGAAAATTGCTCGAAGGAATG
* * *
23898145 GATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACACATAAAAGTTTGTC-A-TTTGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * * *
23898208 AAGTTCGATCGAGAACCAAGAGAGAAACAATTCGCACCTAAATAAGTTTTTAATTCAAAGACCAA
64 AAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * *
23898273 AAGTTATTTACAAAATGACAACTATTTAGATC-AACTGATGAGATTTCCCAAGCATGGACTGTAC
129 AAGTTGTTTACAAAATGACAACTATTTAGACCTAA-TGATGCGATTTCCCGAGCATGGAATGTTC
*
23898337 -GAAAAATGGCTCGAAGGAATG
193 AG-AAAATTGCTCGAAGGAATG
* *
23898358 GATCATTTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGG
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * * * *
23898423 AAGTTTGACCGAGAACCAAGAA-AGAAACAATTCTCACATAAAGAAATTTTTAATTTAAAGACCA
64 AAGTTCGACCGAGAACCAA-AAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* * * * * **
23898487 AAAGTTATTTACAAAATGACAAATATTTAGACCAAATGATTCGACTTT-CCAATTATGGAATGTT
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGA-TTTCCCGAGCATGGAATGTT
23898551 CAGAAAATTGCTCGAAGGAATG
192 CAGAAAATTGCTCGAAGGAATG
*
23898573 GATCGTCTTGAATACTTTATGGAACAAAAGTT-T----G---TC----AAG--T-TC--G---GA
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA
* * * * * * *
23898618 AGTTTGACCAAGAACCAAGAA-AGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGAACAA
65 AGTTCGACCGAGAACCAA-AAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
23898682 AAGTTTTTTACAAATTGAAAATCTATTTAGAAC-AATCGATGCGATTTCCCGAACATGGAATGTT
129 AAGTTGTTTACAAAATGACAA-CTATTTAGACCTAAT-GATGCGATTTCCCGAGCATGGAATGTT
* * *
23898746 C-GAGTAATTGCACAAAGGAATG
192 CAGA-AAATTGCTCGAAGGAATG
* *
23898768 GATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAAAAAGAAC-CTGTAAAAGTTTGTCAACT
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTT---ATAAAAGAACTC-GTAAAAGTTTGTCAAGT
* *
23898832 TCGGAAGTTCGACCAAGAACCAAGAGAGAAACT-ATTAC-CACCTAAATAAGTTTTTAATTCAAA
61 TC-GAAGTTCGACCGAGAACCAAAAGAGAAA-TAATT-CTCACCTAAATAAGTTTTTAATTCAAA
* * * * * *
23898895 GACCAAATGTTATTTATAAAA-AACAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAA
123 GACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAA
* *
23898959 TGTTCAAAAAATTGCTCAAAGGAATG
188 TGTTCAGAAAATTGCTCGAAGGAATG
* *
23898985 GATCGTCTTGAATAATTTATGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
*
23899050 AAGTTC-AGCCGAGAACCAAGAGAGAAACT-ATTAC-CACCTAAATAAGTTTTTAATTCAAAGAC
64 AAGTTCGA-CCGAGAACCAAAAGAGAAA-TAATT-CTCACCTAAATAAGTTTTTAATTCAAAGAC
** * * *
23899112 CAAAAGTAATTTACAAAATGACAACTATTTAGACATAATGATGCGATTTCCCAAGCATGGACTGT
126 CAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGT
* *
23899177 TC-GAAAAATGGCTTGAAGGAATG
191 TCAG-AAAATTGCTCGAAGGAATG
* * * * *
23899200 GATCATCTTGAATTCTTTAAGGAACAGAAGTTAAAAAAGAACTCGTAAAAGTTTGTCTAGTTTTG
1 GATCGTCTTGAATACTTTAAGGAACA-AAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG-TTCG
** * *
23899265 AAGTTCGATTGAGAACCAATAGAGAAACT-ATTATCACCTAAATAAGTTTTTAATTCAAAGACCA
64 AAGTTCGACCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* * * * * *
23899329 AAATTTGTTTATAAAATGACAACTATTTAGACCAAATGATGTGATTTCCTGAGCTTGGAATGTTC
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTC
** *
23899394 AGGGAATTGCTCGAAAGAATG
193 AGAAAATTGCTCGAAGGAATG
* * * *
23899415 GATCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTTGTAAAAGTTTGTCAACTTCGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * *
23899479 AAGTTCGGCCGTGAA-CAAAGAGAGAAACT-ATTCTCACCAAAATAAGTTTTTAATTCAAAGACC
64 AAGTTCGACCGAGAACCAAA-AGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * *
23899542 AAAAGCTGTTTACAAAATGACAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGTT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTT
*
23899607 C-GAAAATTTGCTCGAGGGAATG
192 CAGAAAA-TTGCTCGAAGGAATG
*
23899629 GATCGTCTTGAATACTTTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGA
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * * *
23899694 AAGTTCGATCGAGAACCAAGAGAGACACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
64 AAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * * * *
23899759 AAGTAGTTTACAAAATGTCAGCTATTTAGATCTAACGATGCGATTTCCCAAGCATGGACTGTAC-
129 AAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTCA
* *
23899823 GAAAAATGGCTCGAAAGAATG
194 G-AAAATTGCTCGAAGGAATG
* *
23899844 GATCTTCATGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGG
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
** * * * * * * *
23899909 AAGCCCAATCGAGAACCAAGAA-AGAAAAAATTCTCACATAAATAACTTTTTAATTTAAAGACCT
64 AAGTTCGACCGAGAACCAA-AAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* * ** * * *
23899973 AAAGTTGTTTACAAAATGACAATCTATTTAGAACTATTGATATGATTTCTCGAGCATGGACTGCT
128 AAAGTTGTTTACAAAATGACAA-CTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTT
*
23900038 C-GAAAAATTGCGCGAAGGAATG
192 CAG-AAAATTGCTCGAAGGAATG
* * * * * *
23900060 GATCGTCTTGAATACTTTAAAGAACCGAAGTTA-AAAAAAACTCATAAATGTTTGTCATGTTCGG
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * * * *
23900124 AAGTTC-AGCCTAGAACCAAGAGAGGAACT-ATTATTATCTAAATAAGTTTTTAATTCAAAGACC
64 AAGTTCGA-CCGAGAACCAAAAGA-GAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * ** * *
23900187 AAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATACGATTTTTCGAGCATGGATTATT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTT
** *
23900252 TGGAAAATGGCTC-AGAGGAATG
192 CAGAAAATTGCTCGA-AGGAATG
* *
23900274 GATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCATAAAAGTTTGTTAAGTTCAG
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * * * * *
23900339 AAGTTCGACCGAGAACCTAGAGAGAAACAATTCTTACATAAATAACTTTTTAATTCAAAAACCAA
64 AAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * ** *
23900404 AAGTTATTTACAAAATGACAATCTATTTAGAAC-AATTGATGAGATTTCTTGAGCACGGAATGTT
129 AAGTTGTTTACAAAATGACAA-CTATTTAGACCTAA-TGATGCGATTTCCCGAGCATGGAATGTT
* *
23900468 CAAAAAATTACTCGAAGGAATG
192 CAGAAAATTGCTCGAAGGAATG
* * *
23900490 GATCGTCTTGAATTCTCTAAGGAACAAAAGTTAAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * * * * * *
23900555 AAGTTCGGCTGAGAACCAATAGAGAAACT-ATTATCATCTAAATAAGTTTTTAATTCAACGAACA
64 AAGTTCGACCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* * * * * *
23900619 AACGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGTGATTTCCTGAGCTTGGAATGTTC
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTC
** * *
23900684 AGGGAATTGCTCAAAAGAATG
193 AGAAAATTGCTCGAAGGAATG
* * * *
23900705 GATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAATGTTTGTCAACTTCGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * * * *
23900770 AAGTTCGGCCGTGAA-CAAAGAGAGAAACTGA-TCTCACCAAAATAAGTTTTTAATTCAAAGAGC
64 AAGTTCGACCGAGAACCAAA-AGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* *
23900833 AAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTT
*
23900898 C-GAAAAATTGCTCGAGGGAATG
192 CAG-AAAATTGCTCGAAGGAATG
* *
23900920 GTTCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * * *
23900985 AAGTTCGATCGAGAACCAAGAGAGATACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
64 AAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * *
23901050 AAGTAT-TTTACAAAATGTCAATTATTTAGATCTAATGATGCGATTTCCCAAGCATGGACTGTAC
129 AAGT-TGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTC
* *
23901114 GGAAAATGGCTCGAAGGAATG
193 AGAAAATTGCTCGAAGGAATG
* *
23901135 GATCCTCTTGAATACTTTAAGGAAAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGA
1 GATCGTCTTGAATACTTTAAGGAACAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-GA
* * * * *
23901200 AGTTCGATCGAGAACCAAGAA-AGAAAAAATTCTCACATAAATAACTTTTTAATTTAAAGACCAA
65 AGTTCGACCGAGAACCAA-AAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
23901264 AAGTTGTTTACAAAATGACAATCTATTTAGAACTATTGATACGGTTTCTCGAGCATGGAATGTTC
129 AAGTTGTTTACAAAATGACAA-CTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTC
*
23901329 AAAAAATTGCGT-GAAGGAATG
193 AGAAAATTGC-TCGAAGGAATG
** * * *
23901350 GATCGTCTTGAATACTTTGAA-GAACCGGAGTTA-AAAAAAAC-CGTAAATGTTTGTCATGTTCG
1 GATCGTCTTGAATACTTT-AAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-
* * * * * *
23901412 GAAGTTCGGA-CTAGAACCAAGAGATGAACT-ATTATCATCTAAATAAGTTTTTAATTCAAAAAC
63 GAAGTTC-GACCGAGAACCAAAAGA-GAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGAC
* * * *
23901475 CAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTCGAGGATGGAATAT
126 CAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGT
** *
23901540 TTGGAAAATGGCTC-AGAGGAATG
191 TCAGAAAATTGCTCGA-AGGAATG
* * *
23901563 GATCGTCTTGAATACTTGAAGGAACAAAAGTTATAAAAGAACTCGAAAAAGTTTGTCAAGTTTGG
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG-TTCG
* * * * * * * * * * *
23901628 ATGTTCGATCGAGAACCTAGACAAAAACAATTCTCTCATAAATAACTTTTTAATTCAAA-AACAG
64 AAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA-
* * ** * *
23901692 AAAGTTGTTTACAAAATGACAATCTATTTAAAAC-AATTGATGATATTTCCCGAGAATGGAATAT
128 AAAGTTGTTTACAAAATGACAA-CTATTTAGACCTAA-TGATGCGATTTCCCGAGCATGGAATGT
* * * *
23901756 T-TGAAAAATTGCTCGAGGGTATA
191 TCAG-AAAATTGCTCGAAGGAATG
* * ** * * * * *
23901779 GATCGTCTTAAATAATTTAAGGAATTGAAGTTAAAAAATAACTCGTAAAGGTTTTTGAAGTTCGG
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * * *
23901844 AAGTTCGACCGAGAACCTAGAGAGAAACT-GTTATCACCTAAACAAGTTTTTAATTCAAAGACCA
64 AAGTTCGACCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
*** * * ** *
23901908 AAAGCCATTTATAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAG-ATTG---GTTC
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTC
* *
23901969 AGAAAATTGCTTGAAGGTATG
193 AGAAAATTGCTCGAAGGAATG
** * * * *
23901990 GATATTCTTGAATACTTTAAGGAACCGATGTTATAAAAGAACTCGTAAATGTTTGTCAACTTCGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* *
23902055 AAGTTC-AGCCTAGAACCAAGAGAGAAACT-ATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
64 AAGTTCGA-CCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * *
23902118 AAAAGTTGTTTCCAAAATGACAACTATTTAGA-CTAAATGATACGATTTCTCGAGCATGGAATGT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCT-AATGATGCGATTTCCCGAGCATGGAATGT
*
23902182 TC-GAAAAATTGCTTGAAGGAATG
191 TCAG-AAAATTGCTCGAAGGAATG
* * *
23902205 GATCGTCTTGACTAATTTAAGGAATCGAAGTTAT--AA-AA---GT-----TTT-TCAAGTTCAG
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * *
23902258 AAGTTCAACCGAGAAGCAAAAGAGAAA-ATATTATCACCTAAATAAGTTTTTAATTCAAAGACCA
64 AAGTTCGACCGAGAACCAAAAGAGAAATA-ATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* * * *
23902322 AAAGTAGTTTACAAAATGACAACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTG--C
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTC
23902385 ATGAAAAATTGCTCGAAGGAATG
193 A-G-AAAATTGCTCGAAGGAATG
* * * *
23902408 GATCGTCTTGAATACTTTAATGACCAAAAGTTATAAAAGAACTCGTTAAAGTTTGTCAAGTTTGG
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAG-TTCG
* * * * * * * **
23902473 AAGTTCGACTGAGAA-CAAAGAAAGAAACAATTCTAACATAAATAACTTTTT-TTTACAAA-ATG
64 AAGTTCGACCGAGAACCAAA-AGAGAAATAATTCTCACCTAAATAAGTTTTTAATT-CAAAGACC
* * ** * * *
23902535 AAAA-TCTATTTAGAACAATTG--ATGTGATTTTCCGAGCCTAGAATG-TTCAGAAAATTCCTCG
127 AAAAGT-TGTTTACAA-AA-TGACAACT-A-TTT-AGA-CCT--AATGATGC-G--ATTTCC-CG
* * ** **
23902596 AAAGAATGG-ATCG-TCTTG--AATT-CTTTAAGGAACA
179 --AGCATGGAAT-GTTC-AGAAAATTGCTCGAAGGAATG
* ** * * ** * * * *
23902630 GA-AGT-TAAAAAAGAAC-TT---GTA-AAAGTT-TGTCAAG--TTCG--AAAGTTTGGCTGAGA
1 GATCGTCT--TGAA-TACTTTAAGGAACAAAGTTAT-AAAAGAACTCGTAAAAGTTTGTC-AAGT
* * * * * ** * * * *
23902683 ACCAA--TAGA--GA-AACTATTATCAGCTAAATAAGTTTTTAATTCAAAGATCAAAAGTTGTTT
61 TCGAAGTTCGACCGAGAACCA--A-AAGAGAAATAA--TTCTCA-CCTAA-AT---AAGTT-TTT
* * ** * ** * * *
23902743 -A-TAAAATGA-CAACTA-TT-TAGACCAAATGA-TGCGATTT---CCTGA-GCTTG-GAATGTT
115 AATTCAAA-GACCAA-AAGTTGTTTACAAAATGACAACTATTTAGACCTAATG-ATGCG-AT-TT
* * * * *
23902797 --C-AG---GGAATTGCTC-GAAAGAATGGATCATCTTGAA-TACTT
175 CCCGAGCATGGAA-TGTTCAG-AA-AATTG--C-TC--GAAGGAATG
* * * * * * * * * * * * * *
23902836 TAACGAAC-CGAAGT--TATAA--AA-GAACTTGTAAAAG--TTTGT-CAACTTTG-AATGTTCG
1 GATCG-TCTTGAA-TACTTTAAGGAACAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-
** ** * ** * * * * ** ** * *
23902891 GCTG-TGAACCAAGAAAGAAACA-ATTCTCACATAA--ATAACCT-TTTAA-TTTAAAGACTAAA
63 GAAGTTCGACCGAGAACCAAA-AGA----GAAATAATTCTCACCTAAATAAGTTTTTA-ATTCAA
* * ** * *
23902950 AGTTGTTTA-CAAAA--TG-----AAAAT-A-TA-TTTAGA-A-C-AATTGATACAATTTCCCGA
122 A---G---ACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAA-TGATGCGATTTCCCGA
*
23903001 GCATGGAATGTTC-GAAAAATTGCGCGAAGGAATG
180 GCATGGAATGTTCAG-AAAATTGCTCGAAGGAATG
* * ** *
23903035 GATCATCTTGAATACTTTAAGGAACCAAAGTTAAAAAAGAACTCACAAATGTTTGTCAAGTTCGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* ** * * * * * * * *
23903100 AAATTC-AGCATAGAACCAAGAGAG-GATCTATTATCATCTATAGAAGTTTTTAATTCAAAGACT
64 AAGTTCGA-CCGAGAACCAAAAGAGAAAT-AATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * * *
23903163 AAAAGTGGTTTATAAAGTGACAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGATTGTT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTT
** * *
23903228 TGGAAAATGGCTCGAAGAAATG
192 CAGAAAATTGCTCGAAGGAATG
* * * *
23903250 GATCATCTTGAATAATTTAAGGAACAAAAGTTATTAAAGAACTCGAAAAAGTTTGTCAAGTTCAG
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * * * * ** * *
23903315 AAGTTCGACCGAGAACCTAGACAAAAACAATTATCACAAAAATAACTTTTTAATTCAAAAACCAA
64 AAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * **
23903380 AAGTTGCTTACAAAATGACAATCTATTTAGAAC-AATTGATGCGATTTCCCGATAAATGGAATGT
129 AAGTTGTTTACAAAATGACAA-CTATTTAGACCTAA-TGATGCGATTTCCCGA-GCATGGAATGT
* *
23903444 TC-GAGAAATTGCTCGAAGGTATT
191 TCAGA-AAATTGCTCGAAGGAATG
* * * * *
23903467 GATCGTCTTGAATAATTTAAGGAATCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTCAAGTTCGG
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * *
23903532 AAGTTTGACCGAGAACCTAGAGAGAAACT-ATTATCACCTAAATAAGTTTTTAATTCAAAGACCA
64 AAGTTCGACCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* ** *
23903596 AAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCTTGGAATGTTC
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTC
* *
23903661 GGAAAATTGCTCAAAGGAATG
193 AGAAAATTGCTCGAAGGAATG
* * *
23903682 GATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGA
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * * *
23903747 AAGTTCGGGCCTAAAACCAAGAGAGAAACT-ATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
64 AAGTTC-GACCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * *
23903811 AAAAGTTGTTTACAAAATGACAACTATTTAGA-CTAAATGATGCAATTTCTCAAGCATGGAATGT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCT-AATGATGCGATTTCCCGAGCATGGAATGT
*
23903875 TCGGAAAATTGCTCGAAGGAATG
191 TCAGAAAATTGCTCGAAGGAATG
* * ** *
23903898 GATCGTCTTGAATAATTTAAGGAGCGTAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGA
1 GATCGTCTTGAATACTTTAAGGAACAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-GA
* * * *
23903963 AGTTTG-CCCAGGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAATACCAA
65 AGTTCGACCGA-GAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
23904027 AAGTAGTTTACAAAATGACAACTATTTAGTCCTAATGATGTGATTTCCCAAGCATGGACTGTAT-
129 AAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGT-TC
*
23904091 GGAAAATTGCTCGAAGGAATG
193 AGAAAATTGCTCGAAGGAATG
* * * * * *
23904112 GATCGTCTAGAATACTTTAATGAAAAAAAGTTACAAAAGAACTCATTAAAGTTTGTCAAGTTCAG
1 GATCGTCTTGAATACTTTAA-GGAACAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * *
23904177 AAGTTCGACCGAGAA-CAAAGAAAGAAACAATTCT-A---ACAT-AG------A-T---A-A-CT
64 AAGTTCGACCGAGAACCAAA-AGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
** * * * *
23904224 TTA-TT-TTT-CAAAATGACAATCTATTTAGAAC-AATAGATGAGATTTCTCGAGCACGGAATGT
128 AAAGTTGTTTACAAAATGACAA-CTATTTAGACCTAAT-GATGCGATTTCCCGAGCATGGAATGT
* *
23904285 T-TGAAAAATTGCTCCAAGGAATG
191 TCAG-AAAATTGCTCGAAGGAATG
* * *
23904308 GATCGTCTTGAATTCTCTAAGGAACAAAACTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGA
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * * * *
23904372 AAGTTCGGCTGAGAACCAATAGAGAAACT-ATTATCACCTAAATAAGTTTTTAATTCGAAGACCA
64 AAGTTCGACCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* * * * * *
23904436 AAA-TTTTTTATAAAATGACAACTATTTAGACCAAATGATGTGATTTCCTGAGCTTGGAATGTTC
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTC
** *
23904500 AGGGAATTGCTCGAAAGAATG
193 AGAAAATTGCTCGAAGGAATG
* * * *
23904521 GATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAATGTTTGTCAACTTCGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * * * *
23904586 AAGTTCGACCGTGAA-CAAAGAGAGAAACT-GTTCTCACCAAAATAAGTTTTTAATTTAAAGGCC
64 AAGTTCGACCGAGAACCAAA-AGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * * * *
23904649 ACAAGTTGTTTACAAAATGACAACTACTTAGACCAAATGAGGCAATTTCTCGAGCATAGAATGTT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTT
*
23904714 C-GAAAAATTGCTCGAGGGAATG
192 CAG-AAAATTGCTCGAAGGAATG
** * *
23904736 GATCGTCTTGAATTTTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
** * * *
23904801 AAGTTCGGTCGAGAACCAAGAGAGATACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
64 AAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * * * * *
23904866 AAGTAGTTTACAAAATGTCAACTATTTAGATCTAATAATGCGATTTTCCAAGCATGGACTGTACG
129 AAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTCA
*
23904931 GAAAATGGCTCGAAGGAATG
194 GAAAATTGCTCGAAGGAATG
* * *
23904951 GATCCTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAATTTTTTCAAGTTCGA
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * * *
23905016 AAGTTCGATCGAGAACCAAGAACGA-AAA-AATTCTCACATAAATAACTTTTTAATTTAAAGACC
64 AAGTTCGACCGAGAACCAA-AA-GAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* ** *
23905079 AAAAGTTGGTTACAAAATGACAATCTATTTAG----AATGATATGATTTCTCGAGCATGGAATGT
127 AAAAGTTGTTTACAAAATGACAA-CTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGT
* *
23905140 TCAGAAAATTACGCGAAGGAATG
191 TCAGAAAATTGCTCGAAGGAATG
* * ** * *
23905163 GATCGTCTTGAATACTTTAAGGAACCGAAGTTA-AAAA-AAATCGTAAATTTTTCTCATGTTCAG
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * * *
23905226 AAGTTCGACAGAGAACCTAAAGAGAAATTATTATCACATAAATAAGTTTTTAATTCAAAGACCAA
64 AAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * ** * *
23905291 AAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCTTGGAATGTTTA
129 AAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTCA
* * *
23905356 GAAAACTGCTCAAAGAAATG
194 GAAAATTGCTCGAAGGAATG
* ** * *
23905376 AATATTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* *
23905441 AAGTTC-AGCGTAGAACCAAGAGAGAAACT-ATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
64 AAGTTCGACCG-AGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * * * *
23905504 AAAAGTTATTTACAAAATGACAACTACTTAGA-CTAAATGATACGATTTCTC--G--T-GCATGT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCT-AATGATGCGATTTCCCGAGCATGGAATGT
*
23905563 TCGGAAAATTGCTCGAAGGAATG
191 TCAGAAAATTGCTCGAAGGAATG
* * *
23905586 GATCGTCTTGAATAATTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGG
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-G
* * * * *
23905651 AAGTTCGGCCTAGAACCAAGAGAGAAACT-ATTCTCACCTAAATAAGTTTTCAATTGAAAGACCA
64 AAGTTCGACCGAGAACCAAAAGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
*
23905715 AAAGTTGTTTACAAAATG------ATTTAGA-CTAAATGATGCGATTTCTCGAGCATGGAATGTT
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCT-AATGATGCGATTTCCCGAGCATGGAATGTT
*
23905773 CGGAAAATTGCTCGAAGGAATG
192 CAGAAAATTGCTCGAAGGAATG
* * *
23905795 GATCGTCTTGAATAGTTTAAGGAATCGAAGTTACAAAAGAACTCGTAAAAGGTTT-TCAAGTTCG
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAA-GTTTGTCAAGTTCG
* * * *
23905859 AAAGTTCGCCCGGGAACCAAAAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAATACCA
64 -AAGTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCA
* * * * * *
23905924 AAAGTAGTTTACAAAATGACAACTATTCAGACCTAATGATGTGATTTCCCAAGCATGGACTATAT
128 AAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGT-T
* *
23905989 -GGAAAGTTGC-CAGAAGGAATG
192 CAGAAAATTGCTC-GAAGGAATG
* * * *
23906010 GATCGTCTTGAATACTTTAATGAAAAAAGTTATAAAAGAACTCATTAAAGTTTGTCAAGTTCGGA
1 GATCGTCTTGAATACTTTAAGGAACAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-GA
* * * * *
23906075 AGTTCGACCGAGAA-CAAAGAAAGAAACAATTCTAACATAAATAA---CTT--TT----------
65 AGTTCGACCGAGAACCAAA-AGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
23906124 ---TT-TTTACAAAATGACAATCTATTTAGAAC-AATTGTTGTGATTTCTCGAGCACGGAATGTT
129 AAGTTGTTTACAAAATGACAA-CTATTTAGACCTAA-TGATGCGATTTCCCGAGCATGGAATGTT
* *
23906184 -TGAAAAATTGCTCCAAGGAATG
192 CAG-AAAATTGCTCGAAGGAATG
* * * *
23906206 GATCGTCTTGAATTCTCTAAGGAACAAAACTTAAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGA
1 GATCGTCTTGAATACTTTAAGGAAC-AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* * * * *
23906271 AAGTTCGGCTGGGAACCATAATAGAGAAACT-ATTATCACCTAAATAAGTTTTTAATTCGAAGAC
64 AAGTTCGACCGAGAACCA-AA-AGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGAC
* * * * * *
23906335 CAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGTGATTTCCTGAGCTTGGAATGC
126 CAAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGT
* *
23906400 TCA-AGGAATTGCTCGAAAGAATG
191 TCAGA-AAATTGCTCGAAGGAATG
* * * *
23906423 GATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGTCAACTTCGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
* *
23906488 AAGTTCGACCGTGAA-CAAAGAGAGAAACT-ATTCTCACCAAAATAAGTTTTTAATTCAAAGACC
64 AAGTTCGACCGAGAACCAAA-AGAGAAA-TAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC
* * ** * * * *
23906551 AAAAGCTGTTTACAAAATGACAACTATTTAGACCAAATGATTTGAATTCTCGAACATTGAATGCT
127 AAAAGTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATG-T
*
23906616 T--GAAAATTGCTCGAGGGAATG
191 TCAGAAAATTGCTCGAAGGAATG
* *
23906637 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGA
1 GATCGTCTTGAATACTTTAAGGAA-CAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-
** *
23906702 AAGTTCGGTCGAGAACCAAGAGAGA
64 AAGTTCGACCGAGAACCAAAAGAGA
23906727 TACAATTCAA
Statistics
Matches: 9410, Mismatches: 1529, Indels: 1151
0.78 0.13 0.10
Matches are distributed among these distances:
193 177 0.02
194 169 0.02
195 207 0.02
196 176 0.02
197 205 0.02
198 147 0.02
199 45 0.00
200 28 0.00
201 17 0.00
202 21 0.00
203 180 0.02
204 59 0.01
205 19 0.00
206 31 0.00
207 38 0.00
208 26 0.00
209 196 0.02
210 267 0.03
211 198 0.02
212 97 0.01
213 487 0.05
214 1492 0.16
215 3447 0.37
216 1056 0.11
217 470 0.05
218 37 0.00
219 73 0.01
220 7 0.00
221 2 0.00
222 19 0.00
223 7 0.00
224 1 0.00
225 7 0.00
226 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (213 bp):
GATCGTCTTGAATACTTTAAGGAACAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAA
GTTCGACCGAGAACCAAAAGAGAAATAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAA
GTTGTTTACAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCGAGCATGGAATGTTCAGA
AAATTGCTCGAAGGAATG
Found at i:23897792 original size:198 final size:197
Alignment explanation
Indices: 23897438--23897807 Score: 476
Period size: 198 Copynumber: 1.9 Consensus size: 197
23897428 CCAAAAGTAG
* * * *
23897438 TTTACAAAATGACAACTATTTAGACCTAATAATGTCATTTCCCAAGCATGGACTGTATGGAAAAT
1 TTTACAAAATGACAACTATTTAGACATAATAATGTCATTTCCCAAGCATGGAATATATGAAAAAT
* * * * *
23897503 TGCTCGAAGGAATGGATCGTCTTAAATACTTTAATGAACAAAAGTTATAAAAGAACTCGTTAAAG
66 TACTCGAAGGAATGGATCATCTTAAATACTTTAAGGAACAAAAGTTAAAAAAGAACTCGTAAAAG
* * * *
23897568 TTTGTCAATTTCGGATGTTCGACTGAGAACAAAGAAAGAAACAATTCTAACATAAATAACTTTTT
131 TTTGCCAAGTTCAGAAGTTCGACTGAGAACAAAGAAAGAAACAATTCTAACATAAATAACTTTTT
23897633 TT
196 TT
* * *
23897635 TTTACAAAATGACAATCTATTTAGA-ATAATTCATG-CGATTTCTCGAGCATGGAATAT-TGCAA
1 TTTACAAAATGACAA-CTATTTAGACATAA-TAATGTC-ATTTCCCAAGCATGGAATATATG-AA
* * * *
23897697 AAATTACTTGAAGGAATGGATCATCTTGAATTCTTTAAGGAACATAAGTTAAAAAAGAACTCGTA
62 AAATTACTCGAAGGAATGGATCATCTTAAATACTTTAAGGAACAAAAGTTAAAAAAGAACTCGTA
* * *
23897762 AAAGTTTGCCAAGTTCAGAAGTTTGACTGAGAACCAATAAAGAAAC
127 AAAGTTTGCCAAGTTCAGAAGTTCGACTGAGAACAAAGAAAGAAAC
23897808 TATTATCATC
Statistics
Matches: 146, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
197 21 0.14
198 125 0.86
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (197 bp):
TTTACAAAATGACAACTATTTAGACATAATAATGTCATTTCCCAAGCATGGAATATATGAAAAAT
TACTCGAAGGAATGGATCATCTTAAATACTTTAAGGAACAAAAGTTAAAAAAGAACTCGTAAAAG
TTTGCCAAGTTCAGAAGTTCGACTGAGAACAAAGAAAGAAACAATTCTAACATAAATAACTTTTT
TT
Found at i:23900145 original size:430 final size:428
Alignment explanation
Indices: 23898598--23920884 Score: 15248
Period size: 430 Copynumber: 52.1 Consensus size: 428
23898588 TTTATGGAAC
* * * *
23898598 AAAAGTTTGTCAAGTTCGGAAGTTTGACCAAGAACCAAGAAAGAAACAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * * *
23898663 TTTTTAATTTAAAGAACAAAAGTTTTTTACAAATTGAAAATCTATTTAGAAC-AATCGATGCGAT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAAT-GATGCGAT
* * ** * *
23898727 TTCCCGAACATGGAATGTTCGAGTAATTGCACAAAGGAATGGATCGTCTTGAATACTTTAAGGAA
129 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * *
23898792 CCAAAGTTAAAAAAAAAGAAC-CTGTAAAAGTTTGTCAACTTCGGAAGTTCGACCAAGAACCAAG
194 CCGAAGTT----AAAAAGAACTC-GTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAG
* * * * *
23898856 AGAGAAACTATTACCACCTAAATAAGTTTTTAATTCAAAGACCAAATGTTATTTATAAAA-AACA
253 AGAGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * *
23898920 ACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTCAAAGGAATG
318 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* *
23898985 GATCGTCTTGAATAATTTATGGAACCAAAGTTATAAAAGAACTCGT
383 GATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * *
23899031 AAAAGTTTGTCAAGTTCGAAAGTTC-AGCCGAGAACCAAGAGAGAAACTATTAC-CACCTAAATA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGA-CCGAGAACCAAGAAAGAAACAATT-CTCACATAAATA
**
23899094 AGTTTTTAATTCAAAGACCAAAAGTAATTTACAAAATGACAACTATTTAG-ACATAATGATGCGA
64 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACA-AATGATGCGA
* * * * * * *
23899158 TTTCCCAAGCATGGACTGTTCGAAAAATGGCTTGAAGGAATGGATCATCTTGAATTCTTTAAGGA
128 TTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * ** ** *
23899223 ACAGAAGTTAAAAAAGAACTCGTAAAAGTTTGTCTAGTTTTGAAGTTCGATTGAGAACCAATAGA
193 ACCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGA
* *
23899288 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTATAAAATGACAACT
256 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACT
* * * ** *
23899353 ATTTAGACCAAATGATGTGATTTCCTGAGCTTGGAATGTTC-AGGGAATTGCTCGAAAGAATGGA
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGA
* * *
23899417 TCATCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTTGT
385 TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * *
23899460 AAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAACTATTCTCACCA-AAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA-CATAAATAA
* * *
23899524 GTTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATGACAACTATTTAGACCAAATGATGCAATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATT
* *
23899589 TCTCGAGCATGGAATGTTCGAAAATTTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAAC
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
** * * *
23899654 TAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTCGATCGAGAACCAAGAGAGA
195 CGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGAGA
* * * * * *
23899719 CACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAGCTAT
258 AACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * * * *
23899784 TTAGATCTAACGATGCGATTTCCCAAGCATGGACTGTACGAAAAATGGCTCGAAAGAATGGATCT
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
* *
23899849 TCATGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGT
388 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* ** * * * *
23899890 AAAAGTTTGTCAAGTTCGGAAGCCCAATCGAGAACCAAGAAAGAAAAAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * * **
23899955 TTTTTAATTTAAAGACCTAAAGTTGTTTACAAAATGACAATCTATTTAGAACTATTGATATGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATT
* * * *
23900020 TCTCGAGCATGGACTGCTCGAAAAATTGCGCGAAGGAATGGATCGTCTTGAATACTTTAAAGAAC
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * * * * *
23900085 CGAAGTTAAAAAAAACTCATAAATGTTTGTCATGTTCGGAAGTTCAGCCTAGAACCAAGAGAGGA
195 CGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAGAA
* * *
23900150 ACTATTATTATCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATT
259 ACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATT
* ** * * * * *
23900215 TAGACCAAATGATACGATTTTTCGAGCATGGATTATTTGGAAAATGGCTC-AGAGGAATGGATCG
324 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGA-AGGAATGGATCG
* *
23900279 TCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCAT
388 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * *
23900320 AAAAGTTTGTTAAGTTC-AGAAGTTCGACCGAGAACCTAGAGAGAAACAATTCTTACATAAATAA
1 AAAAGTTTGTCAAGTTCGA-AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAA
* * * * *
23900384 CTTTTTAATTCAAAAACCAAAAGTTATTTACAAAATGACAATCTATTTAGAACAATTGATGAGAT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGAT
* * * * * *
23900449 TTCTTGAGCACGGAATGTTCAAAAAATTACTCGAAGGAATGGATCGTCTTGAATTCTCTAAGGAA
129 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
** * * *
23900514 CAAAAGTTAAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAATAGAG
194 CCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAG
* * * * *
23900579 AAACTATTATCATCTAAATAAGTTTTTAATTCAACGAACAAACGTTGTTTATAAAATGACAACTA
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * * ** * *
23900644 TTTAGACCAAATGATGTGATTTCCTGAGCTTGGAATGTTC-AGGGAATTGCTCAAAAGAATGGAT
322 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
* *
23900708 CATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * *
23900751 AAATGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAACTGA-TCTCACCA-AAATA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAAC-AATTCTCA-CATAAATA
* *
23900814 AGTTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGAT
64 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGAT
* *
23900879 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAGGGAATGGTTCGTCTTGAATACTTTAAGGAA
129 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * *
23900944 CCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTCGATCGAGAACCAAGAGAG
194 CCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGAG
* * * * *
23901009 ATACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAT-TTTACAAAATGTCAATT
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGT-TGTTTACAAAATGACAACT
* * * * * * *
23901073 ATTTAGATCTAATGATGCGATTTCCCAAGCATGGACTGTACGGAAAATGGCTCGAAGGAATGGAT
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* *
23901138 CCTCTTGAATACTTTAAGGAA-AAAAGTTATAAAAGAACTCGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * *
23901180 AAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAAAGAAAAAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * * *
23901245 TTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACTATTGATACGGTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATT
*
23901310 TCTCGAGCATGGAATGTTCAAAAAATTGCGT-GAAGGAATGGATCGTCTTGAATACTTTGAA-GA
130 TCTCGAGCATGGAATGTTCGAAAAATTGC-TCGAAGGAATGGATCGTCTTGAATACTTT-AAGGA
* * * * * *
23901373 ACCGGAGTTAAAAAAAAC-CGTAAATGTTTGTCATGTTCGGAAGTTCGGACTAGAACCAAGAGAT
193 ACCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGA-
* *
23901437 G-AACTATTATCATCTAAATAAGTTTTTAATTCAAAAACCAAAAGTTGTTTACAAAATGACAACT
256 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACT
* * * * * *
23901501 ATTTAGACCAAATGATGCGATTTCTCGAGGATGGAATATTTGGAAAATGGCTC-AGAGGAATGGA
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGA-AGGAATGGA
* * *
23901565 TCGTCTTGAATACTTGAAGGAACAAAAGTTATAAAAGAACTCGA
385 TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * *
23901609 AAAAGTTTGTCAAGTTTGGATGTTCGATCGAGAACCTAGACAA-AAACAATTCTCTCATAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGA-AAGAAACAATTCTCACATAAATAA
* * * * **
23901673 CTTTTTAATTCAAA-AACAGAAAGTTGTTTACAAAATGACAATCTATTTAAAACAATTGATGATA
65 GTTTTTAATTCAAAGACCA-AAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGA
* * * * * * * * *
23901737 TTTCCCGAGAATGGAATATTTGAAAAATTGCTCGAGGGTATAGATCGTCTTAAATAATTTAAGGA
128 TTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** * * * * *
23901802 ATTGAAGTTAAAAAATAACTCGTAAAGGTTTTTGAAGTTCGGAAGTTCGACCGAGAACCTAGAGA
193 ACCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGA
* * *** *
23901867 GAAACTGTTATCACCTAAACAAGTTTTTAATTCAAAGACCAAAAGCCATTTATAAAATGACAACT
256 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACT
** * * *
23901932 ATTTAGACCAAATGATGCGATTTCCTAAG-ATTG---GTTC-AGAAAATTGCTTGAAGGTATGGA
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGA
** * *
23901992 TATTCTTGAATACTTTAAGGAACCGATGTTATAAAAGAACTCGT
385 TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * *
23902036 AAATGTTTGTCAACTTCGAAAGTTC-AGCCTAGAACCAAGAGAGAAACTATTCTCACCTAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGA-CCGAGAACCAAGAAAGAAACAATTCTCACATAAATAA
* *
23902100 GTTTTTAATTCAAAGACCAAAAGTTGTTTCCAAAATGACAACTATTTAG-ACTAAATGATACGAT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAAC-AAATGATGCGAT
* * *
23902164 TTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGACTAATTTAAGGAA
129 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
23902229 TCGAAGTT-------A----TAAAAGTTTTTCAAGTTCAGAAGTTCAACCGAGAAGCAAAAGAGA
194 CCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAGA
* *
23902283 AAATATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAACTAT
258 AACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * *
23902348 TTAGACCTAATGATGTGATTTCCCAAGCATGGACTGCAT-GAAAAATTGCTCGAAGGAATGGATC
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATC
*
23902412 GTCTTGAATACTTTAATG-ACCAAAAGTTATAAAAGAACTCGT
387 GTCTTGAATACTTTAAGGAACC-AAAGTTATAAAAGAACTCGT
* * * * * * *
23902454 TAAAGTTTGTCAAGTTTGGAAGTTCGACTGAGAACAAAGAAAGAAACAATTCTAACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * *
23902519 TTTTT--TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGAACAATTGATGTGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTT
* * * * *
23902565 -TCCGAGCCTAGAATGTTC-AGAAAATTCCTCGAAAGAATGGATCGTCTTGAATTCTTTAAGGAA
131 CT-CGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
23902628 CAGAAGTTAAAAAAGAACTTGTAAAAGTTTGTCAAGTTCGAAAGTTTGGCTGAGAACCAATAGAG
194 CCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAG-TTCGCCGAGAACCAAGAGAG
* * *
23902693 AAACTATTATCAGCTAAATAAGTTTTTAATTCAAAGATCAAAAGTTGTTTATAAAATGACAACTA
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * ** *
23902758 TTTAGACCAAATGATGCGATTTCCTGAGCTTGGAATGTTC-AGGGAATTGCTCGAAAGAATGGAT
322 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
* * * *
23902822 CATCTTGAATACTTTAACGAACCGAAGTTATAAAAGAACTTGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * *
23902865 AAAAGTTTGTCAACTTTGAATGTTCGGCTGTGAACCAAGAAAGAAACAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * * * * * *
23902930 CTTTTAATTTAAAGACTAAAAGTTGTTTACAAAATGAAAATATATTTAGAACAATTGATACAATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATT
* * *
23902995 TCCCGAGCATGGAATGTTCGAAAAATTGCGCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* ** * * * ** *
23903060 CAAAGTTAAAAAAGAACTCACAAATGTTTGTCAAGTTCGAAAATTCAGCATAGAACCAAGAGAGG
195 CGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAGA
* * * * * * * *
23903125 ATCTATTATCATCTATAGAAGTTTTTAATTCAAAGACTAAAAGTGGTTTATAAAGTGACAACTAT
258 AACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * *
23903190 TTAGACCAAATGATGCGATTTCCTGAGCATGGATTGTTTGGAAAATGGCTCGAAGAAATGGATCA
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
* * * *
23903255 TCTTGAATAATTTAAGGAACAAAAGTTATTAAAGAACTCGA
388 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * *
23903296 AAAAGTTTGTCAAGTTC-AGAAGTTCGACCGAGAACCTAGACAA-AAACAATTATCACAAAAATA
1 AAAAGTTTGTCAAGTTCGA-AAGTTCGACCGAGAACCAAGA-AAGAAACAATTCTCACATAAATA
* * * *
23903359 ACTTTTTAATTCAAAAACCAAAAGTTGCTTACAAAATGACAATCTATTTAGAACAATTGATGCGA
64 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGA
* ** * * * *
23903424 TTTCCCGATAAATGGAATGTTCGAGAAATTGCTCGAAGGTATTGATCGTCTTGAATAATTTAAGG
128 TTTCTCGA-GCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * *
23903489 AATCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTCAAGTTCGGAAGTTTGACCGAGAACCTAGAG
192 AACCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAG
23903554 AGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAC
255 AGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAC
** * * *
23903619 TATTTAGACCAAATGATGCGATTTCCTAAGCTTGGAATGTTCGGAAAATTGCTCAAAGGAATGGA
320 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* **
23903684 TCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGT
385 TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * *
23903728 AAAAGTTTGTCAACTTCGAAAGTTCGGGCCTAAAACCAAGAGAGAAACTATTCTCACCTAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTC-GACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAA
*
23903793 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAG-ACTAAATGATGCAAT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAAC-AAATGATGCGAT
* * *
23903857 TTCTCAAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAATTTAAGG-A
129 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
23903921 GCGTAGTTATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTTTGCCCAGGAACCAAAAGAG
194 CCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGCCGA-GAACCAAGAGAG
* * * *
23903986 AAACAATTCTCACCTAAATAAGTTTTTAATTCAAATACCAAAAGTAGTTTACAAAATGACAACTA
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * * * * *
23904051 TTTAGTCCTAATGATGTGATTTCCCAAGCATGGACTGTAT-GGAAAATTGCTCGAAGGAATGGAT
322 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT-TCGAAAAATTGCTCGAAGGAATGGAT
* * ** * *
23904115 CGTCTAGAATACTTTAATGAAAAAAAGTTACAAAAGAACTCAT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * *
23904158 TAAAGTTTGTCAAGTTC-AGAAGTTCGACCGAGAACAAAGAAAGAAACAATTCTAACATAGATAA
1 AAAAGTTTGTCAAGTTCGA-AAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAA
* *
23904222 ----CT--TT-----------A-TT-TTT-CAAAATGACAATCTATTTAGAAC-AATAGATGAGA
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAAT-GATGCGA
* * * * *
23904266 TTTCTCGAGCACGGAATGTTTGAAAAATTGCTCCAAGGAATGGATCGTCTTGAATTCTCTAAGGA
128 TTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** * * * *
23904331 ACAAAACTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAATAGAG
193 ACCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAG
* * *
23904396 AAACTATTATCACCTAAATAAGTTTTTAATTCGAAGACCAAAA-TTTTTTATAAAATGACAACTA
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * * ** *
23904460 TTTAGACCAAATGATGTGATTTCCTGAGCTTGGAATGTTC-AGGGAATTGCTCGAAAGAATGGAT
322 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
* *
23904524 CATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * **
23904567 AAATGTTTGTCAACTTCGAAAGTTCGACCGTGAACAAAGAGAGAAACTGTTCTCACCA-AAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA-CATAAATAA
* * * * * * *
23904631 GTTTTTAATTTAAAGGCCACAAGTTGTTTACAAAATGACAACTACTTAGACCAAATGAGGCAATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATT
* * **
23904696 TCTCGAGCATAGAATGTTCGAAAAATTGCTCGAGGGAATGGATCGTCTTGAATTTTTTAAGGAAC
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * *
23904761 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTCGGTCGAGAACCAAGAGAGA
195 CGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAGA
* * * * *
23904826 TACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTAT
258 AACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * * * * *
23904891 TTAGATCTAATAATGCGATTTTCCAAGCATGGACTGTACGGAAAATGGCTCGAAGGAATGGATCC
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
*
23904956 TCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGT
388 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * *
23904997 AAAATTTTTTCAAGTTCGAAAGTTCGATCGAGAACCAAGAACGAAAAAATTCTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * **
23905062 TTTTTAATTTAAAGACCAAAAGTTGGTTACAAAATGACAATCTATTTAG----AATGATATGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATT
* *
23905123 TCTCGAGCATGGAATGTTC-AGAAAATTACGCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
130 TCTCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* ** * * * *
23905187 CCGAAGTTAAAAA-AAATCGTAAATTTTTCTCATGTTCAGAAGTTCGACAGAGAACCTAA-AGAG
194 CCGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACC-AAGAGAG
* * *
23905250 AAATTATTATCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTA
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
** * * * * * *
23905315 TTTAGACCAAATGATGCGATTTCCTAAGCTTGGAATGTT-TAGAAAACTGCTCAAAGAAATGAAT
322 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
** * *
23905379 ATTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * *
23905422 AAAAGTTTGTCAACTTCGAAAGTTC-AGCGTAGAACCAAGAGAGAAACTATTCTCACCTAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCG-AGAACCAAGAAAGAAACAATTCTCACATAAATAA
* * *
23905486 GTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAACTACTTAG-ACTAAATGATACGAT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAAC-AAATGATGCGAT
* * *
23905550 TTCTC--G--T-GCATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAATTTAAGGAA
129 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * *
23905610 TCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTCGGCCTAGAACCAAGAGAG
194 CCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAG
* * *
23905675 AAACTATTCTCACCTAAATAAGTTTTCAATTGAAAGACCAAAAGTTGTTTACAAAATG------A
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * *
23905734 TTTAGACTAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATC
322 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC
* * * *
23905799 GTCTTGAATAGTTTAAGGAATCGAAGTTACAAAAGAACTCGT
387 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * *
23905841 AAAAGGTTT-TCAAGTTCGAAAGTTCGCCCGGGAACCAA-AAGAGAAACAATTCTCACCTAAATA
1 AAAA-GTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAA-AGAAACAATTCTCACATAAATA
* * * * * *
23905904 AGTTTTTAATTCAAATACCAAAAGTAGTTTACAAAATGACAACTATTCAGACCTAATGATGTGAT
64 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGAT
* * * * * * *
23905969 TTCCCAAGCATGGACTATAT-GGAAAGTTGC-CAGAAGGAATGGATCGTCTTGAATACTTTAATG
129 TTCTCGAGCATGGAATGT-TCGAAAAATTGCTC-GAAGGAATGGATCGTCTTGAATACTTTAAGG
** * * * *
23906032 AA-AAAAGTTATAAAAGAACTCATTAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACAAAGAA
192 AACCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAG
* * * * *
23906096 AGAAACAATTCTAACATAAATAA---CTT--TT-------------TT-TTTACAAAATGACAAT
255 AGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-
* * * * * * * *
23906142 CTATTTAGAACAATTGTTGTGATTTCTCGAGCACGGAATGTTTGAAAAATTGCTCCAAGGAATGG
319 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * * * *
23906207 ATCGTCTTGAATTCTCTAAGGAACAAAACTTAAAAAAGAACTCGT
384 ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * *
23906252 AAAAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCATA-ATAGAGAAACTATTATCACCTAAAT
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCA-AGA-A-AGAAACAATTCTCACATAAAT
* * * *
23906316 AAGTTTTTAATTCGAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGTGA
63 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGA
* * * * *
23906381 TTTC-CTGAGCTTGGAATGCTC-AAGGAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAG
128 TTTCTC-GAGCATGGAATGTTCGAA-AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * *
23906444 GAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGTCAACTTCGAAAGTTCGACCGTGAACAAAGA
191 GAACCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGA
* * *
23906509 GAGAAACTATTCTCACCAAAATAAGTTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATGACAA
254 GAGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
** * * * * *
23906574 CTATTTAGACCAAATGATTTGAATTCTCGAACATTGAATGCTT-G-AAAATTGCTCGAGGGAATG
319 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATG
*
23906637 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
383 GATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* ** *
23906683 AAAAGTTTGTCAAGTTTGAAAGTTCGGTCGAGAACCAAG--AG--A-GA---T-AC---------
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * * *
23906730 -----AATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTAGTGATGCGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTT
* * * * * *
23906790 CCCAAGCATGGACTGTACGAAAAAATGGC-CGAAGGAATGGATCCTCTTGAATACTTTAAGGAAC
131 CTCGAGCATGGAATGTTCG-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
** * * * *
23906854 AAAAGTTATAAAAGAACTTGTAAAAGTTTGTCAAGTT--GAATGTTTGATCGAGAACCAAGAAAG
195 CGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAA-GTTCG-CCGAGAACCAAGAGAG
** * * * *
23906917 AAAAAATTGTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCT
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CT
* * ** * * * *
23906982 ATTTAGAACAATTGATATGATTTCTCGAGCATGGAATGTTC-AGAAAGTTACGCGAAGGAATGGA
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGA
* * *
23907046 TCGTCTTGAATACTTTAAGGAACCGAAGTTA-AAAAAAACTCAT
385 TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * * * *
23907089 AAATGTTTGTCATGTTCGGAAGTTCGA-CTAGAACCAAGAGAGGAACTATTATCATC-CAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA-CATAAATAA
* *
23907152 GTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGC-ACT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGA-T
* * * * *
23907216 TTCCCGAGCATGGATTGTTCGAAATATGGCTC-AGAGGAATGGATCGTCTTGAATATTTTAAGGA
129 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGA
** * * * * *
23907280 ACAAAAGTTATAAAAGAACTCATAACAGTTTGTCAAGTTCGGAAGTTCGATCGTGAACAAAGAGA
193 ACCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGA
* *
23907345 GAAACTATTCTCACCAAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACT
256 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACT
* * * * * * *
23907410 ATTTAGACCAAATGATGAGAATTCTCGAACATGGAATGCTCAAAAAATTGCTCGAGGGAATGGAT
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
*
23907475 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
** ** * * *
23907518 AAAAGTTTGTCAAGTTTAAAAGTTCGGTCGAGAACCAAGAGAGATACAATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * * *
23907583 TTTTTAATTCAAAGACCAAAAGTAGTTTACAAAAATGTCAACTATTTAGATCTAGTGATGCGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTAC-AAAATGACAACTATTTAGAACAAATGATGCGATT
* * * * *
23907648 TC-CTAAGCATGGACTGTACGAAAAA-TGACCCGAAGGAATGGATCCTCTTGAATACTTTAAGGA
130 TCTC-GAGCATGGAATGTTCGAAAAATTG-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** * * * * * *
23907711 ACAAAAGTTATAAAAGAACTCGTAAATGTTTGTCAAGTGCGGATGTTTGATCGAGAACCAAGAAA
193 ACCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGA
* * * * * *
23907776 GAAGA-AATTGTCACATAAGTAA-CTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAT
256 GAA-ACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-
* * ** * * *
23907839 CTATTTAGAACAATTGATATGATTTCTCGACCATGGAATGTTCAAAAAATTGCGT-GAAGGAATG
319 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC-TCGAAGGAATG
* * *
23907903 GATCTTCTTGAATACTTTAAGGAACCGAAGTTA-AAAAAAACTCGT
383 GATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * * * * * *
23907948 AAATGTTTGTCATGTTTGGAAGTTCGGCCTAGAACCAAGAGAGGAACTATTATCATC-CAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA-CATAAATAA
* * * * *
23908012 GTTTTTAATTTAAAGACTAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCTATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATT
* * * * *
23908077 TCCCGAGCATGGATTGTTCGGAAAATGGCTC-AGAGGAATGGATCATCTTGAATACTTTAAGGAA
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * * *
23908141 -CAAAATTAATAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGACAACCTAGAGAG
194 CCGAAGTTAA-AAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGAG
* * * * *
23908205 AAA-TAATTCTCACATAAATAACTTTTTAATTCGAAGACCGAAAGTTGTTTACAAAATGACAATC
257 AAACT-ATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-C
* * * * * * * *
23908269 TATTTAGAACAATTGATGCAATTTCCCGAGAATGGAATGTTTGAAAAATTGCTCGAGGGTATAGA
320 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * *
23908334 TCGTCTTGAATAATTTAAGGAGCCGAAGTTAAAAAAGAACTCGT
385 TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * * *
23908378 AAAGGTTTTTCAAGTTCGGAAGTTCGGCCAAGAACCTAGAAAGAAACTATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* *
23908443 TTTTCAATTGAAAGACCAAAAGTTGTTTACAAAATG------ATTTAG-ACTAAATGATGCGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAAC-AAATGATGCGATT
* * * * *
23908501 TCTCAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAAT
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * * * *
23908566 CGAAGTTATAAAAGAACTCGTAAAA-TTTTTCAAGTGCGGAAGTTCACCCGGGAACCAAAAGAGA
195 CGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAGA
* * * * *
23908630 AACAATTCTCACCTAAATAAGTTTTTAATTCAAATACCAAAAGTAGTTTACAAAAAGACAACTAT
258 AACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * * *
23908695 TCAGACCTAATGATGTGATTTCCCAAGCATGGACTGTAT-GGAAAGTTGCTCGAAGGAATGGACC
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT-TCGAAAAATTGCTCGAAGGAATGGATC
* ** *
23908759 GTCTTGAATACTTTAATGAAGAAAAGTTATAAAAAGAACTCAT
387 GTCTTGAATACTTTAAGGAACCAAAGTTAT-AAAAGAACTCGT
* * * * *
23908802 TAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAAAGAAACAATTCTAACATAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCA-AGAAAGAAACAATTCTCACATAAATAA
* * * *
23908866 CTTTTT--TT----TA-CAAAA--TG---AC--AAT-----CTATTTAGAACAATTGTTGCGATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATT
* * * * *
23908912 TCTCGAGTAAGGAATGTTGGAAAAATTGCTCGAAGGAATGGATCATCTTGAATTA-TCTAAGGAA
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAA
** * * * * *
23908976 CAAAAGATAAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCAATAGAG
194 CCGAAG-TTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAG
* * *
23909041 AAACTATTATCACCTAAATAAGTTCTTAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTA
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * * ** *
23909105 TTTAGACACAAATGATGTGATTTCCTGAGCTTGGAATGTTC-AGGGAATTGCTCGAAAGAATGGA
322 TTTAGAC-CAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGA
* *
23909169 TCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC-CTGT
385 TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC-GT
* * * * * *
23909213 AAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAAACTATTCTCACCA-AAATA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAG-AAACAATTCTCA-CATAAATA
* * * *
23909277 AGGTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATAACAACTATTT-GACCAAATGATGCGAT
64 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGAT
* ** *
23909341 TTCTCGAACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAA
129 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * *
23909406 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTCGATCGAGAACCAAGAGAG
194 CCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGAG
* * * * *
23909471 AATTCAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACT
257 AA-ACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACT
* * * * * * *
23909536 ATTTAGATCTAATGATGCGATTTCCCAAGCATGGACTGTACGGAAAATGGCTCG-AGGAATGGAT
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * *
23909600 CCTCTTGAATACTTTTAGTAACAAAAGTTATAAAAGAACTCGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * *
23909643 AAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAAAAAATTGTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * **
23909708 TTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATATGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATT
* * * *
23909773 TCCCGAGCATGGAATGTTC-AGAAATTGCGCGAAGGAACGGATCGTCTTGAATACTTTAAGGAAC
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
** * * * *
23909837 CGAAGTTAAAAA-ATTTCGTAAATGTTTGTCATGTTCGAAAGTTCGGCCGAGAACC-AGAGAGGA
195 CGAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAGAA
*
23909900 ACTATTATCATCC-AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTAT
259 ACTATTATCA-CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * *
23909964 TTAGACCAAATGATGCGATTTCTCGAGGATGGATTGTTCCG-AAAATGGCTAG-AGGAATAGAGG
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT-CGAAAAATTGCTCGAAGGAAT-----
* *
23910027 GAAGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCAT
382 ---GGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * *
23910077 AAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACTACAG--AGAAACAATTCTCTCATAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCA-AGAAAGAAACAATTCTCACATAAATAA
* * *
23910140 CTTTTTAATTC-AA-ACCAAAAGTT-TTTTCAAAATGACAATCTATTTAGAACAATTGATGCGAT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGAT
* * * * * * * * *
23910202 TTCCCGAGAATGTAATGTTTGAAAAATGGCTCGAGGGTATAGATCGTCTTGAATAATTTAAGGAA
129 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * **
23910267 CCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTCAAGTTCGGAAGTTCGGACCGAGAACCTGGAGA
194 CCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-G-CCGAGAACCAAGAGA
* * * *
23910332 G-AATTTTTATCAGCTAAAT-AGGTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG------
256 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACT
* * * * *
23910389 ATTTAGACTAAATGATGCGATTTCTCAAGCATGGAATGTTTGGAAAA-TGCTCGAAGGAATGGAT
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * *
23910453 CGTCTTGAATAGTTTAAGGAATCGAAGTTATAAAAGAACTCGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * *
23910496 AAAA-TTTTTCAAGTGCGGAAGTTC-ACCCGGGAACCAA-AAGAGAAAACAATTCTCACCTAAAT
1 AAAAGTTTGTCAAGTTCGAAAGTTCGA-CCGAGAACCAAGAA-AG-AAACAATTCTCACATAAAT
* * * * * * *
23910558 AAGTTTTTAATTCAAATACCAAAAGTAGTTTACAAAAAGACAACTATTCAGACCTAATGATGTGA
63 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGA
* * * * * * *
23910623 TTTCCCAAGCATGGACTGTAT-G-GAAAGTGCTCGAAGGAATGGACCGTCTTGAATACTTTAATG
128 TTTCTCGAGCATGGAATGT-TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
*** * * * * * *
23910686 AAGAAAAGTTATAAAAGAACTCATTAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGA
192 AACCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCA-AGA
* * * * ** *
23910750 AAGAAACAATTCTAACAAAAATAA---CTT--TT-------------TT-TTTACAAAATGACAA
254 GAGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * * * * * *
23910796 TCTA-TTAGAACAATTGTTGCGATTTCTCGAGTAAGGAATGTT-GGAAAATTGCTCGAAGGAATG
319 -CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * * *
23910859 GATCATCTTGAATTA-TCTAAGGAACAAAAGATAAAAAAGAACTCGT
383 GATCGTCTTGAA-TACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * * * *
23910905 AAAAGTTTGTCAGGTTCGAAAGTTCGGCTGGGAACCAATAGAGAAACTATTATCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * * *
23910970 TTCTTAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAG-ACCAATGATGTGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTT
* *** * * *
23911033 C-CTGAGCTTGGAATGTTC-AGGGATTGCTCGAAAGAATAGATCATCTTGAATACTTTAAGGAAC
131 CTC-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * *
23911096 CGAAGTTATAAAAGAAAAC-CTGTAAAAGTTTGTCAACTTC-GAAGTTCGGCCGTGAACAAAGAG
195 CGAAGTTA-AAAAG--AACTC-GTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAG
* * * *
23911159 AGAAACTATTCTCACCAAAATAAGTTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATAACAAC
255 AGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAC
* * * ** *
23911224 TATTTGGA-CAAATGATGCGATTTCTCGAACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGA
320 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
*
23911288 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
385 TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * *
23911332 AAAAGTTTGTCAAGTTTGAAAGCTCGATCG-GAACCAAGAGAGATACAATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * * *
23911396 TTTTTAATTCAAAGACCAAAAGTAGTTTTCAAAATGTC-ACTATTTAGATCTAATGATGCGA-TT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTT
* * * * * * * * * *
23911459 CCCAAGCATGGACTGTACGGAAAATGGCTCG-AGGAATGGATCCTCTTGAATACTTTTAGTAACA
131 CTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* * * * * *
23911523 AAAGTTATAAAAGAACTCGTAAAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGA
196 GAAGTTA-AAAAGAACTCGT-AAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGAGA
* * * * * *
23911588 AA-AAATGTCACATAAAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATC
258 AACTATTATCACCT--AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-C
* * ** * *
23911652 TATTTAGAACAATTGATATGATTT-CCGAGCATGGAATGTTC-AGAAAA-TGCGCGAAGG-ACGG
320 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGG
* *
23911713 ATCGTCTTGAATACTTTAAGGAACCGAAGTTA-AAAA-AATTTCGT
384 ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA-CTCGT
* * * * * * *
23911757 AAATGTTTGTCATGTTCG-AAGTTCGGCCGAGAGACCAAGAGAGGAACTATTAT--CATCAAATA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGA-ACCAAGAAAGAAACAATTCTCACAT-AAATA
* * *
23911819 AGTTTTTAATTCAAAGACC--AAGGTGTTTATAAAATGACAACTA-TTAGACCAAATGATGCGAT
64 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGAT
* * * *
23911881 TTCTCGAGGATGGATTGTTCCG-AAAATGGC-CTAGAGGAATGGATCGTCTTGAATACTTTAAGG
129 TTCTCGAGCATGGAATGTT-CGAAAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGG
** * * * *
23911944 AACAAAAGTTATAAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACC--TAC
192 AACCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAG
**********************************************************
23912007 AGAAA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
255 AGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAC
******************************************* ***
23912070 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAGAACTCGTAA--AAGTT
320 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGAA--T
* * * ** * * * * *
23912133 TG-TCAAGT-TCGAA-AGTTCGGCTGCGGAACCAATAG--AGAAACTATTATCACCT
382 GGATC--GTCTTGAATACTT----TAAGGAACCAA-AGTTATAAA--A-GAACTCGT
** * ** * * * * * * *
23912185 AAATAAGTTCT-T-AA-TT-G-AAGACCAAAAGTTGTTTA-TAA-AATGACAACTATT-T-AGAC
1 -AA-AAGTT-TGTCAAGTTCGAAAGTTCGACCG-AG--AACCAAGAAAGA-AACAATTCTCACAT
* * *** * ** * ** * *
23912241 AAATGATGTGATTTCTGAGTGGGATGTTCAGGGAA-TTGCTCGA-AAGAATG-GATC-ATCTT-G
59 AAAT-AAGT--TTT-T-AATTCAAAGACCA--AAAGTTG-TTTACAA-AATGACAACTAT-TTAG
* ** * * * * * * ** * * *
23912301 AATACTTTAAG-GA--AC-CGAAGTTAT-AAAAGAACTGTAAAAGTTTG-TC-AACTTCGAA-AG
114 AACAAATGATGCGATTTCTCG-AG-CATGGAATGTTC-G-AAAA-ATTGCTCGAA---GGAATGG
* * * ** * * * * ** *
23912358 TTCGGCCGTG-A-AC-AAAGAGAGAAAC-TATTCTCACCA-AA----T-AAGGTTT-T-AA-TTC
171 ATC-GTCTTGAATACTTTA-AG-GAACCGAAGT-TAAAAAGAACTCGTAAAAGTTTGTCAAGTTC
* ** * *** * * * * *
23912410 -AAAGACCAAAAGCTGTTTA-CAAAATA-ACAACTATT-TAGACC-AAATGATGCGATTTCTCGA
232 GGAAGTTC----GCCGAGAACCAAGAGAGA-AACTATTAT-CACCTAAAT-A--AG-TTT-T-TA
* ** ** * ** *** * * *
23912470 ACATGGAATCCTCGAAAAATTGCTCGAGGGAATG-GATCGT-CTT-G----AAT-A--C--TTT-
285 A-TTCAAAGAC-C-AAAAGTTG-TTTACAAAATGACAAC-TATTTAGACCAAATGATGCGATTTC
** * ** *** *** * *
23912522 AAG-GAACCGAA-GTTATTAAAAGAACTCGTAA--AAGTTTG-TCAAGT-TTGAA-AGCTCGGT-
345 CCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGAA--TGGATC--GTCTTGAATA-CT--TTA
* ** * ** *
23912579 CGAGAACCAAGAGAGATACAA-TTCTCACCT
402 AG-GAACCAA-AGTTATAAAAGAACT--CGT
* ** * ** * * * * *
23912609 AAATAAGTTT-TTAA-TTC-AAAGACCAAAAGTAGTTTA-CAA-AATGTCAACTATT-T-AGATC
1 -AA-AAGTTTGTCAAGTTCGAAAGTTCGACCG-AG--AACCAAGAAAG-AAACAATTCTCACA--
** ** * * * ** *
23912667 TAATGATGCGATTTCCCAA-GCATGGACTGTACGGAAAA--TGGCT-CGAGGAATGGATCCTCTT
58 TAA--ATAAG-TTT-TTAATTCA---A-AG-AC-CAAAAGTTGTTTAC-A-AAAT-GA----C--
* * * ** * *
23912728 GAA-TACTTTTAGTAACAAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTTGA
104 -AACTA--TTTAG-AAC-AAA-TGAT----G----CG----A-TTTCTCGAGCATGGAA---TGT
* *** ** * *** * * * ** *
23912792 TCGAGAAAGAACAAGAAGAAAAAAATTGTCACATAAATAACTTTTTTTTTAATTAAAGACCAAAA
147 TCGAAAAATTGCTCGAAGGAATGGATCGT--CTTGAAT-AC------TTTAA--GGA-ACC-GAA
* * ***
23912857 GTTGTTTACAAAATGACAATC-T---A-TTTAGAACAA-TT--GATATGATTTC-CCGAGCATGG
199 ---G-TTA-AAAA-GA-ACTCGTAAAAGTTT-G-TCAAGTTCGGA-A-G--TTCGCCGAG-AACC
** * * * ** * * * *
23912913 AATGTTCAGAAA--ATT-GC-GCGAAGGAACGGATCGTCTTGAATACTTTAAGGAACC-GAA---
250 AA-G-AGAGAAACTATTATCACCTAAATAA--G-T--T-TT---TAATTCAAAG-ACCAAAAGTT
* * ** * * * * * *** **
23912970 GTTAAAAAAATTTCGTAAATGTTT-G-TC--ATG-TTCGGAAGTTCGGCCGAG-AACCAA-GAGA
303 GTTTACAAAATGAC--AACTATTTAGACCAAATGATGC-G-ATTTC--CCGAGCATGGAATG-TT
* ** * * * * * * * * *
23913028 GGAACTATTATCATC-CA--AAT--A-AGT-TT--TTAATTCAAAG-ACCAAAAGTTGTTTATAA
361 CGAAAAATT-GC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-AAAG-T-TATAAAA
23913083 -AA-T-G-
421 GAACTCGT
* * * * * *** * *** * *
23913087 ACAACTATT-T--AG-ACCAAATGATGCGATTTCTCGAGGATGGATTGTTCCG-AA-AATGGCTT
1 AAAAGT-TTGTCAAGTTCGAAA-G-TTCGA---C-CGA-GAACCA-AG-AAAGAAACAAT-TCTC
* ** * * * * * * * * * * *
23913146 AGAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAG-T-TATAAAAGAACTCATAA-AAGTT
55 ACATAAAT--A-AGT-TT--TTAATTCAAAGACCAAAAGTTGTTTACAA-AA-TGACAACTA-TT
* * * * *** * ** **
23913208 T-G-TC-AA-G-TTCGGAAGTTCGATCGAGAACCTACA-G--AGAAAACAATT-CTCTCATAAAT
111 TAGAACAAATGATGC-G-ATTTC--TCGAGCATGGA-ATGTTCG-AAA-AATTGCTCGAAGGAAT
* * * ** * * * *
23913264 --AAC-TTTTTAAT--TCGAA--AACCAAAAGTTTTTTCAAAATGACAATC-T---A-TTTAGAA
169 GGATCGTCTTGAATACTTTAAGGAACC-GAAG----TT-AAAAAGA-ACTCGTAAAAGTTT-G-T
* * ** *** * ** ** *
23913317 CAA-TT-GATGCGATTTC-CCGAGAATGTAATGTTTGAAA-AATGGCTCGAGGGTATAGAT-CGT
225 CAAGTTCG--G-AAGTTCGCCGAGAA-CCAA-GAGAGAAACTAT-TATC-A-CCTA-A-ATAAGT
* * * * ** * * *
23913377 CTTGAATAATTTAAGGAACC-GAAG-T-TAAAAAAGAACTCGTA-AAGGT-TTT---TC-AA-G-
280 -TT--TTAATTCAAAG-ACCAAAAGTTGTTTACAA-AA-T-G-ACAA-CTATTTAGACCAAATGA
* * * * ** * ***
23913431 TTCGGAAGTTCGGCCGAGAACCTGG-A-G--AGAATTTATT-ATC-ACCTAAATAGG-T--T-TT
336 TGC-G-ATTTC--CCGAG--CATGGAATGTTCGAA-AAATTGCTCGA-AGGAAT-GGATCGTCTT
* * * * ** *
23913486 ---TAATTCAAAG-ACCAAAAGTTGTTTACAAAATGATTTAGACT
392 GAATACTTTAAGGAACC-AAA---G-TTATAAAA-GAACTCG--T
* * * * * * * ** * ***
23913527 AAATGATGCGATTTCTCAAGCATGGAATGTTTG---GAAAATTGCTCGAAGGAATGGATCGTCTT
1 AAA--A---G-TTTGTCAAG-TTCGAAAGTTCGACCGAGAA--CCAAGAAAGAAACAAT--TC-T
* ** ** ** * * *
23913589 GA-ATAGTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAA-TT-TTT-C-AAGTG-CGGAAGT
54 CACATA-AATAA-GTTTTTAA--T-TCAAAG-AC-C--AAAAGTTGTTTACAAAATGAC--AA-C
**** * * * * ** *
23913648 TCACCCGGGAACCAAAAGA-GAAAC-AATTCTC-A-CCT-AAATAAGTTTTTAATTCAAA-TAC-
107 T-A-TTTAGAA-CAAATGATG---CGATTTCTCGAGCATGGAAT--G-TTCGAA---AAATTGCT
* * * ** ***** * * * *
23913706 CAAAAGTA-GTTTACAAAAAGACA-ACTATTCA-G-ACCTAATGATGTGATTTCCCAAGCATGGA
160 CGAAGGAATGGAT-CGTCTTGA-ATACT-TTAAGGAACCGAA-G-T-T-A------AA--AAGAA
* * ** * *
23913767 CT-GTATGGAAAG-TTGCTCGAAGGAAT-GGACCG-TC-TTGA-ATACTTTAATGA-AGAAAAGT
210 CTCGTA---AAAGTTTG-TC-AA-G-TTCGGA-AGTTCGCCGAGA-AC--CAA-GAGAG-AAA-C
* ** * * * **
23913825 TATAAAAGAACTCATTAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAACAGAGAAAGAAACAAT
261 TAT-TATCACCTAAAT-AAGTTTTT--AATTC-AAA----GACC---AA-A-AG-TTG------T
* ** * * * * *
23913890 TCTAACATAAAT---AACTTTTTTTTACAAAATGACAAT-CTATTT--AGAACAATTGTTGCGAT
305 T-T-ACA-AAATGACAAC-TATTTAGACCAAATG---ATGCGATTTCCCGAGC-A-TG--G-AAT
* * * * * *
23913949 TTCTCGAGTACGGAA-TGTTGGAAAAATTGCTCGAA-GGAATGGATCATCTTGAATTA-TCTAAG
358 GT-TCGA--A--AAATTGCTCG---AA--G---GAATGG-----ATCGTCTTGAA-TACTTTAAG
* * *
23914011 GAACAAAAGATAAAAAAAGAACTCGT
404 GAACCAAAG-TTATAAAAGAACTCGT
* * * * * * * *
23914037 AAAAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCAATAGAGAAACTATTATCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * * *
23914102 TTCTTAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGTGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTT
* ** * *
23914166 C-CTGAGCTTGGAATGTTC-AGGGAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAA
131 CTC-GAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * *
23914229 CCGAAGTTATAAAAGAAC-CTGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGA
194 CCGAAGTTA-AAAAGAACTC-GTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGA
* * * *
23914293 GAAACTATTCTCACCAAAATAAGGTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATGACAACT
256 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACT
* * ** *
23914358 ATTTAGACCAAATGATGCGATTTCTCGAACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGAT
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
*
23914423 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * ** * * *
23914466 AAAAGTTTGTCAAGTTTGAAAGCTCGGTCGAGAACCAAGAGAGATACAATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * *
23914531 TTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTAATGATGCGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTT
* * * * * * * * * *
23914596 CCCAAGCATGGACTGTACGGAAAATGGCTCG-AGGAATGGATCCTCTTGAATACTTTTAGTAACA
131 CTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* * * * * *
23914660 AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAA
196 GAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGAGAA
** * * * *
23914725 AAAATTGTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTAT
259 ACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTAT
* * ** * *
23914790 TTAGAACAATTGATATGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCGCGAAGGAACGGATC
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATC
* *
23914854 GTCTTGAATACTTTAAGGAACCGAAGTTA-AAAA-AATTTCGT
387 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA-CTCGT
* * * * * * * * *
23914895 AAATGTTTGTCATGTTCGGAAGTTCGGCCGAGAACCAAGAGAGGAACTATTATCATC-CAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA-CATAAATAA
* *
23914959 GTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCGATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATT
* * * *
23915024 TCTCGAGGATGGATTGTTCCG-AAAATGGCT-TAGAGGAATGGATCGTCTTGAATACTTTAAGGA
130 TCTCGAGCATGGAATGTT-CGAAAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGA
** * * * *
23915087 ACAAAAGTTATAAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCTACAGA
193 ACCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGA
* * * * * *
23915152 GAAACAATTCTCTCATAAATAACTTTTTAATTCGAAA-ACCAAAAGTT-TTTTCAAAATGACAAT
256 GAAACTATTATCACCTAAATAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAA-
* * * * * * * * *
23915215 CTATTTAGAACAATTGATGCGATTTCCCGAGAATGTAATGTTTGAAAAATGGCTCGAGGGTATAG
319 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * *
23915280 ATCGTCTTGAATAATTTAAGGAACCGAAGTTAAAAAAGAACTCGT
384 ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * ** * *** * * *
23915325 AAAGGTTTTTCAAGTTCGGAAGTTCGGCCGAGAACCTGGAGAGAATTTATTATCACCTAAATAGG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
23915390 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG------ATTTAG-ACTAAATGATGCGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAAC-AAATGATGCGATT
* * * * *
23915448 TCTCAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAAT
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * * * *
23915513 CGAAGTTATAAAAGAACTCGTAAAA-TTTTTCAAGTGCGGAAGTTCACCCGGGAACCAAAAGAGA
195 CGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAGA
* * * * *
23915577 AACAATTCTCACCTAAATAAGTTTTTAATTCAAATACCAAAAGTAGTTTACAAAAAGACAACTAT
258 AACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * * *
23915642 TCAGACCTAATGATGTGATTTCCCAAGCATGGACTGTAT-GGAAAGTTGCTCGAAGGAATGGACC
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT-TCGAAAAATTGCTCGAAGGAATGGATC
* ** *
23915706 GTCTTGAATACTTTAATGAAGAAAAGTTATAAAAGAACTCAT
387 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * *
23915748 TAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAAAGAAACAATTCTAACATAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCA-AGAAAGAAACAATTCTCACATAAATAA
* * * *
23915812 CTTTTT--TT----TA-CAAAA--TG---AC--AAT-----CTATTTAGAACAATTGTTGCGATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATT
* * * * *
23915858 TCTCGAGTACGGAATGTTGGAAAAATTGCTCGAAGGAATGGATCATCTTGAATTA-TCTAAGGAA
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAA
** * * * * *
23915922 CAAAAGATAAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCAATAGAG
194 CCGAAG-TTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAG
* * *
23915987 AAACTATTATCACCTAAATAAGTTCTTAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTA
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * * ** *
23916051 TTTAGACCAAATGATGTGATTTCCTGAGCTTGGAATGTTC-AGGGAATTGCTCGAAAGAATGGAT
322 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
* *
23916115 CATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC-CTGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC-GT
* * * * * *
23916158 AAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAACTATTCTCACCA-AAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA-CATAAATAA
* * *
23916222 GTTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATAACAACTATTTAGACCAAATGATGCGATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATT
* ** *
23916287 TCTCGAACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAAC
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * * *
23916352 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTCGGTCGAGAACCAAGAGAGA
195 CGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAGA
* * * * *
23916417 TACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTAT
258 AACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * * *
23916482 TTAGATCTAATGATGCGATTTCCCAAGCATGGACTGTACGGAAAATGGCTCG-AGGAATGGATCC
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
* * *
23916546 TCTTGAATACTTTTAGTAACAAAAGTTATAAAAGAACTCGT
388 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * *
23916587 AAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAAAAAATTGTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * **
23916652 TTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATATGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATT
* * *
23916717 TCCCGAGCATGGAATGTTC-AGAAAATTGCGCGAAGGAACGGATCGTCTTGAATACTTTAAGGAA
130 TCTCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * *
23916781 CCGAAGTTAAAAA-AATTTCGTAAATGTTTGTCATGTTCGGAAGTTCGGCCGAGAACCAAGAGAG
194 CCGAAGTTAAAAAGAA-CTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAG
* *
23916845 GAACTATTATCATCC-AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACT
257 AAACTATTATCA-CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACT
* * * * *
23916909 ATTTAGACCAAATGATGCGATTTCTCGAGGATGGATTGTTCCG-AAAATGGCT-TAGAGGAATGG
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT-CGAAAAATTGCTCGA-AGGAATGG
* *
23916972 ATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCAT
384 ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * *
23917017 AAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCTACAGAGAAACAATTCTCTCATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* *
23917082 TTTTTAATTCGAAA-ACCAAAAGTT-TTTTCAAAATGACAATCTATTTAGAACAATTGATGCGAT
66 TTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGAT
* * * * * * * * *
23917145 TTCCCGAGAATGTAATGTTTGAAAAATGGCTCGAGGGTATAGATCGTCTTGAATAATTTAAGGAA
129 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * **
23917210 CCGAAGTTAAAAAAGAACTCGTAAAGGTTTTTCAAGTTCGGAAGTTCGGCCGAGAACCTGGAGAG
194 CCGAAGTT-AAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAG
** *
23917275 AATTTATTATCACCTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG------A
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * * * *
23917334 TTTAGACTAAATGATGCGATTTCTCAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATC
322 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC
* * *
23917399 GTCTTGAATAGTTTAAGGAATCGAAGTTATAAAAGAACTCGT
387 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * *
23917441 AAAA-TTTTTCAAGTGCGGAAGTTC-ACCCGGGAACCAA-AAGAGAAACAATTCTCACCTAAATA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGA-CCGAGAACCAAGAA-AGAAACAATTCTCACATAAATA
* * * * * * *
23917503 AGTTTTTAATTCAAATACCAAAAGTAGTTTACAAAAAGACAACTATTCAGACCTAATGATGTGAT
64 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGAT
* * * * * * *
23917568 TTCCCAAGCATGGACTGTAT-GGAAAGTTGCTCGAAGGAATGGACCGTCTTGAATACTTTAATGA
129 TTCTCGAGCATGGAATGT-TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
*** * * * * * * *
23917632 AGAAAAGTTATAAAAGAACTCATTAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAA
193 ACCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCA-AGAG
* * * * * *
23917696 AGAAACAATTCTAACATAAATAACTTTTT--TT----TA-CAAAA--TG---AC--AAT-----C
255 AGAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAC
* * * * * * *
23917742 TATTTAGAACAATTGTTGCGATTTCTCGAGTACGGAATGTTGGAAAAATTGCTCGAAGGAATGGA
320 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * *
23917807 TCATCTTGAATTA-TCTAAGGAACAAAAGATAAAAAAGAACTCGT
385 TCGTCTTGAA-TACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * * * *
23917851 AAAAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCAATAGAGAAACTATTATCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * * *
23917916 TTCTTAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGTGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTT
* ** * *
23917980 C-CTGAGCTTGGAATGTTC-AGGGAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAA
131 CTC-GAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * *
23918043 CCGAAGTTATAAAAGAAC-CTGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGA
194 CCGAAGTTA-AAAAGAACTC-GTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGA
* * * * *
23918107 GAAACTATTCTCACCAAAATAAGGTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATAACAACT
256 GAAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACT
* * * ** *
23918172 ATTTGGACCAAATGATGCGATTTCTCGAACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGAT
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
*
23918237 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * ** * * *
23918280 AAAAGTTTGTCAAGTTTGAAAGCTCGGTCGAGAACCAAGAGAGATACAATTCTCACCTAAATAAG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * * *
23918345 TTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTAATGATGCGATTT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTT
* * * * * * * * * *
23918410 CCCAAGCATGGACTGTACGGAAAATGGCTCG-AGGAATGGATCCTCTTGAATACTTTTAGTAACA
131 CTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* * * * * *
23918474 AAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAA
196 GAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGAGAA
** * * * *
23918539 AAAATTGTCACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTAT
259 ACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTAT
* * ** * *
23918604 TTAGAACAATTGATATGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCGCGAAGGAACGGATC
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATC
* *
23918668 GTCTTGAATACTTTAAGGAACCGAAGTTA-AAAA-AATTTCGT
387 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA-CTCGT
* * * * * * * * *
23918709 AAATGTTTGTCATGTTCGGAAGTTCGGCCGAGAACCAAGAGAGGAACTATTATCATC-CAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA-CATAAATAA
* *
23918773 GTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCGATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATT
* * * *
23918838 TCTCGAGGATGGATTGTTCCG-AAAATGGCT-TAGAGGAATGGATCGTCTTGAATACTTTAAGGA
130 TCTCGAGCATGGAATGTT-CGAAAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGA
** * * * *
23918901 ACAAAAGTTATAAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCTACAGA
193 ACCGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCG-CCGAGAACCAAGAGA
* * * * * *
23918966 GAAACAATTCTCTCATAAATAACTTTTTAATTCGAAA-ACCAAAAGTT-TTTTCAAAATGACAAT
256 GAAACTATTATCACCTAAATAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAA-
* * * * * * * * *
23919029 CTATTTAGAACAATTGATGCGATTTCCCGAGAATGTAATGTTTGAAAAATGGCTCGAGGGTATAG
319 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * *
23919094 ATCGTCTTGAATAATTTAAGGAACCGAAGTTAAAAAAGAACTCGT
384 ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * ** * *** * * *
23919139 AAAGGTTTTTCAAGTTCGGAAGTTCGGCCGAGAACCTGGAGAGAATTTATTATCACCTAAATAGG
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
23919204 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG------ATTTAG-ACTAAATGATGCGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAAC-AAATGATGCGATT
* * * * *
23919262 TCTCAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAAT
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * * * *
23919327 CGAAGTTATAAAAGAACTCGTAAAA-TTTTTCAAGTGCGGAAGTTCACCCGGGAACCAAAAGAGA
195 CGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAGA
* * * * *
23919391 AACAATTCTCACCTAAATAAGTTTTTAATTCAAATACCAAAAGTAGTTTACAAAAAGACAACTAT
258 AACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * * *
23919456 TCAGACCTAATGATGTGATTTCCCAAGCATGGACTGTAT-GGAAAGTTGCTCGAAGGAATGGACC
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT-TCGAAAAATTGCTCGAAGGAATGGATC
* ** *
23919520 GTCTTGAATACTTTAATGAAGAAAAGTTATAAAAGAACTCAT
387 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * *
23919562 TAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAAAGAAACAATTCTAACATAAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCA-AGAAAGAAACAATTCTCACATAAATAA
* * * *
23919626 CTTTTT--TT----TA-CAAAA--TG---AC--AAT-----CTATTTAGAACAATTGTTGCGATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATT
* * * * *
23919672 TCTCGAGTACGGAATGTTGGAAAAATTGCTCGAAGGAATGGATCATCTTGAATTA-TCTAAGGAA
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAA
** * * * * *
23919736 CAAAAGATAAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCAATAGAG
194 CCGAAG-TTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAG
* * *
23919801 AAACTATTATCACCTAAATAAGTTCTTAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTA
257 AAACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTA
* * * ** *
23919865 TTTAGACCAAATGATGTGATTTCCTGAGCTTGGAATGTTC-AGGGAATTGCTCGAAAGAATGGAT
322 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
* *
23919929 CATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC-CTGT
386 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC-GT
* * * * * *
23919972 AAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAACTATTCTCACCA-AAATAA
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCA-CATAAATAA
* * * * *
23920036 GGTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATAACAACTATTTGGACCAAATGATGCGATT
65 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATT
* ** *
23920101 TCTCGAACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAAC
130 TCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * * *
23920166 CGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTCGGTCGAGAACCAAGAGAGA
195 CGAAGTTA-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAGA
* * * * *
23920231 TACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTAT
258 AACTATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTAT
* * * * * * * *
23920296 TTAGATCTAATGATGCGATTTCCCAAGCATGGACTGTACGGAAAATGGCTCG-AGGAATGGATCC
323 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
* * *
23920360 TCTTGAATACTTTTAGTAACAAAAGTTATAAAAGAACTCGT
388 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * * *
23920401 AAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAAAAAATTGTCACATAAATAAC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
* * **
23920466 TTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATATGATT
66 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATT
* * *
23920531 TCCCGAGCATGGAATGTTC-AGAAAATTGCGCGAAGGAACGGATCGTCTTGAATACTTTAAGGAA
130 TCTCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * *
23920595 CCGAAGTTAAAAA-AATTTCGTAAATGTTTGTCATGTTCGGAAGTTCGGCCGAGAACCAAGAGAG
194 CCGAAGTTAAAAAGAA-CTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GCCGAGAACCAAGAGAG
* *
23920659 GAACTATTATCATCC-AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACT
257 AAACTATTATCA-CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACT
* * * * *
23920723 ATTTAGACCAAATGATGCGATTTCTCGAGGATGGATTGTTCCG-AAAATGGCT-TAGAGGAATGG
321 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT-CGAAAAATTGCTCGA-AGGAATGG
* *
23920786 ATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCAT
384 ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * *
23920831 AAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCTACAGAGAAACAATTCTC
1 AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTC
23920885 TCANNNNNNN
Statistics
Matches: 17430, Mismatches: 3317, Indels: 2217
0.76 0.14 0.10
Matches are distributed among these distances:
398 2 0.00
399 76 0.00
400 2 0.00
403 11 0.00
404 20 0.00
405 85 0.00
406 198 0.01
407 129 0.01
408 76 0.00
409 320 0.02
410 969 0.06
411 750 0.04
412 176 0.01
413 135 0.01
414 201 0.01
415 8 0.00
416 20 0.00
417 33 0.00
418 145 0.01
419 268 0.02
420 59 0.00
421 100 0.01
422 81 0.00
423 871 0.05
424 731 0.04
425 592 0.03
426 412 0.02
427 499 0.03
428 687 0.04
429 3239 0.19
430 3387 0.19
431 1490 0.09
432 489 0.03
433 287 0.02
434 121 0.01
435 35 0.00
436 22 0.00
437 4 0.00
438 2 0.00
439 4 0.00
440 6 0.00
441 9 0.00
442 18 0.00
443 8 0.00
444 5 0.00
445 11 0.00
446 14 0.00
447 3 0.00
448 9 0.00
449 16 0.00
450 17 0.00
451 29 0.00
452 10 0.00
453 4 0.00
454 8 0.00
455 6 0.00
456 4 0.00
457 10 0.00
458 8 0.00
459 8 0.00
460 5 0.00
461 7 0.00
462 5 0.00
463 4 0.00
464 4 0.00
466 3 0.00
467 4 0.00
468 23 0.00
469 21 0.00
470 4 0.00
471 14 0.00
472 11 0.00
473 4 0.00
474 7 0.00
475 11 0.00
476 11 0.00
477 15 0.00
478 14 0.00
479 18 0.00
480 9 0.00
481 23 0.00
482 19 0.00
483 21 0.00
484 15 0.00
485 11 0.00
486 7 0.00
487 8 0.00
488 10 0.00
489 24 0.00
490 16 0.00
491 18 0.00
492 15 0.00
493 8 0.00
494 8 0.00
495 6 0.00
496 7 0.00
497 4 0.00
498 3 0.00
500 3 0.00
501 5 0.00
502 4 0.00
503 8 0.00
504 17 0.00
505 1 0.00
506 5 0.00
508 1 0.00
510 5 0.00
512 5 0.00
513 9 0.00
516 7 0.00
517 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (428 bp):
AAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACATAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTT
CTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
GAAGTTAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGCCGAGAACCAAGAGAGAAAC
TATTATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTA
GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCT
TGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
Found at i:23902610 original size:196 final size:196
Alignment explanation
Indices: 23902329--23911993 Score: 1492
Period size: 215 Copynumber: 45.8 Consensus size: 196
23902319 CCAAAAGTAG
* * * *
23902329 TTTACAAAATGACAA-CTATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTG--CATGAAA
1 TTTACAAAATGAAAATCTATTTAGACC-AATGATGTGATTTTCCGAGCATGGAATGTTCA-G-AA
* * * * *
23902391 AATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAATGACCAAAAGTTATAAAAGAACTCGTTA
63 AATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTTATAAAAGAACTTGTAA
* *
23902456 AAGTTTGTCAAGTTTGGAAGTTCGACTGAGAACAAAGAAAGAAACAATTCTAACATAAATAACTT
128 AAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAATTCTAACATAAATAACTT
23902521 TTT-
193 TTTA
* * *
23902524 TTTACAAAATGAAAATCTATTTAGAACAATTGATGTGATTTTCCGAGCCTAGAATGTTCAGAAAA
1 TTTACAAAATGAAAATCTATTTAGACCAA-TGATGTGATTTTCCGAGCATGGAATGTTCAGAAAA
* * * * *
23902589 TTCCTCGAAAGAATGGATCGTCTTGAATTCTTTAAGGAACAGAAGTTAAAAAAGAACTTGTAAAA
65 TTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTTATAAAAGAACTTGTAAAA
* * * * * * * * *
23902654 GTTTGTCAAGTTCGAAAGTTTGGCTGAGAACCAATAGAGAAACTATTATCAGC-TAAATAAGTTT
130 GTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAATTCT-AACATAAATAACTTT
23902718 TTAA
194 TT-A
* *
23902722 TTCAAAGATCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCGA-TTTCCTGAG
1 TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGACC-AATGATGTGATTTTCC-GAG
* ** *
23902786 CTTGGAATGTTCAGGGAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAACGAACC-GAAGT
47 CATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGT
* *
23902850 TATAAAAGAACTTGTAAAAGTTTGTCAACTTT-GAATGTTCGGCTGTGAACCAAGAAAGAAACAA
111 TATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAA-GTTCGGCTGAGAACCAAGAAAGAAACAA
*
23902914 TTCTCACATAAATAACCTTTTAATTTAAAGACTAAAA
175 TTCTAACATAAATAA-C---T--TTT------T---A
* * *** *
23902951 GTTGTTTACAAAATGAAAATATATTTAGAACAATTGATACAATTTCCCGAGCATGGAATGTTC-G
1 ----TTTACAAAATGAAAATCTATTTAGACCAA-TGATGTGATTTTCCGAGCATGGAATGTTCAG
* * * * * *
23903015 AAAAATTGCGCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCA-AAGTTAAAAAAGAACTC
61 -AAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTTATAAAAGAACTT
** * * * * * * * * * * * *
23903079 ACAAATGTTTGTCAAGTTCGAAAATTCAGCAT-AGAACCAAGAGAGGATCTATTATCATC-TATA
124 GTAAAAGTTTGTCAAGTTTGGAAGTTCGGC-TGAGAACCAAGAAAGAAACAATTCT-AACATAAA
* *
23903142 GAAGTTTTTAA
187 TAACTTTTT-A
* *
23903153 TTCAAAGACTAAAAGTGGTTTATAAAGTGACAACTATTTAGACCAAATGATGCGA-TTTCCTGAG
1 TT----TAC-AAAA-T-G---A-AAA-T-----CTATTTAGACC-AATGATGTGATTTTCC-GAG
* ** * * * * * *
23903217 CATGGATTGTTTGGAAAATGGCTCG-AAGAAATGGATCATCTTGAATAATTTAAGGAACAAAAGT
47 CATGGAATGTTCAGAAAATTGCTCGAAAG-AATGGATCGTCTTGAATACTTTAACGACCAGAAGT
* * * ** * * *
23903281 TATTAAAGAACTCGAAAAAGTTTGTCAAGTTCAGAAGTTCGACCGAGAACCTAGACAA-AAACAA
111 TATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGA-AAGAAACAA
* * *
23903345 TTATCACAAAAATAACTTTTTAATTCAAAAACCAAAA
175 TTCTAACATAAATAAC--TTT--TT-----------A
* * * * **
23903382 GTTGCTTACAAAATGACAATCTATTTAGAACAATTGATGCGATTTCCCGATAAATGGAATGTTC-
1 --T--TTACAAAATGAAAATCTATTTAGACCAA-TGATGTGATTTTCCGA-GCATGGAATGTTCA
* * * * * * *
23903446 GAGAAATTGCTCGAAGGTATTGATCGTCTTGAATAATTTAAGGAATC-GAAGTTAAAAAAGAACT
60 GA-AAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTTATAAAAGAACT
* * * * * * * * * * * * *
23903510 CGTAAAGGTTTTTCAAGTTCGGAAGTTTGACCGAGAACCTAGAGAGAAACTATTATCACCTAAAT
123 TGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAATTCTAACATAAAT
*
23903575 AAGTTTTTAA
188 AACTTTTT-A
* * *
23903585 TTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGA-TTTCCTAAG
1 TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGACC-AATGATGTGATTTTCC-GAG
* * * * * *
23903649 CTTGGAATGTTCGGAAAATTGCTC-AAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGT
47 CATGGAATGTTCAGAAAATTGCTCGAAA-GAATGGATCGTCTTGAATACTTTAACGACCAGAAGT
* * * * * * *
23903713 TATAAAAGAACTCGTAAAAGTTTGTCAACTTCGAAAGTTCGGGCCT-AAAACCAAGAGAGAAACT
111 TATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTC-GG-CTGAGAACCAAGAAAGAAACA
* * *
23903777 ATTCTCACCTAAATAAGTTTTTAA
174 ATTCTAACATAAATAACTTTTT-A
* * * * *
23903801 TTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACTAAATGATG-CAATTTCTCAAG
1 TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGAC-CAATGATGTGATTTTC-CGAG
* * * * * *
23903865 CATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAATTTAAGGAGC-GTAGTT
47 CATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTT
* * * * **
23903929 ATAAAAGAACTCGTAAAAGTTTTTCAAGTTCGGAAGTT-TGCCCAGGAACCAA-AAGAGAAACAA
112 ATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGA-GAACCAAGAA-AGAAACAA
* * *
23903992 TTCTCACCTAAATAAGTTTTTAA
175 TTCTAACATAAATAACTTTTT-A
* * *
23904015 TTCAAATACCAAAAGTAGTTTACAAAATGACAACTATTTAGTCCTAATGATGTGATTTCCCAAGC
1 TT----TA-CAAAA-T-G-----AAAAT-----CTATTTAGACC-AATGATGTGATTTTCCGAGC
* * * * * ** *
23904080 ATGGACTGTAT-GGAAAATTGCTCGAAGGAATGGATCGTCTAGAATACTTTAATGAAAAAAAGTT
48 ATGGAATGT-TCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTT
* ** * ** * * *
23904144 ACAAAAGAACTCATTAAAGTTTGTCAAGTTCAGAAGTTCGACCGAGAACAAAGAAAGAAACAATT
112 ATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAATT
*
23904209 CTAACATAGATAACTTTATT-
177 CTAACATAAATAACTTT-TTA
* * * * *
23904229 TTT-CAAAATGACAATCTATTTAGAACAATAGATGAGA-TTTCTCGAGCACGGAATGTT-TGAAA
1 TTTACAAAATGAAAATCTATTTAGACCAAT-GATGTGATTTTC-CGAGCATGGAATGTTCAG-AA
* * * * * * * * *
23904291 AATTGCTCCAAGGAATGGATCGTCTTGAATTCTCTAAGGAACAAAACTTA-AAAAGAACTCGTAA
63 AATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTTATAAAAGAACTTGTAA
* * * * * * * * *
23904355 AAGTTTGTCAAGTTCGAAAGTTCGGCTGAGAACCAATAGAGAAACTATTATCACCTAAATAAGTT
128 AAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAATTCTAACATAAATAACTT
23904420 TTTAA
193 TTT-A
* *
23904425 TTCGAAGACCAAAATTTTTTATAAAATGACAACTATTTAGACCAAATGATGTGA-TTTCCTGAGC
1 TT----TA-CAAAA-----T-GAAAAT-----CTATTTAGACC-AATGATGTGATTTTCC-GAGC
* ** * *
23904489 TTGGAATGTTCAGGGAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCA-AAGTT
48 ATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTT
* * * * * * * * * **
23904553 ATAAAAGAACTTGTAAATGTTTGTCAACTTCGAAAGTTCGACCGTGAACAAAGAGAGAAACTGTT
112 ATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAATT
* *
23904618 CTCACCA-AAATAAGTTTTTAA
177 CT-AACATAAATAACTTTTT-A
* * *
23904639 TTTAAAGGCCACAAGTTGTTTACAAAATGACAACTACTTAGACCAAATGA-G-GCAATTTCTCGA
1 TTT--A---CA-AA-ATG-----AAAAT-----CTATTTAGACC-AATGATGTG-ATTTTC-CGA
* ** ** *
23904702 GCATAGAATGTTC-GAAAAATTGCTCGAGGGAATGGATCGTCTTGAATTTTTTAAGGAACC-GAA
46 GCATGGAATGTTCAG-AAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAA
* * * *
23904765 GTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTCGG-TCGAGAACCAAGAGAGATAC
109 GTTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCAAGAAAGAAAC
* * *
23904829 AATTCTCACCTAAATAAGTTTTTAA
173 AATTCTAACATAAATAACTTTTT-A
* * * * *
23904854 TTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTAATAATGCGATTTTCCAAGC
1 TT----TA-CAAAA-T-G-----AAAA--T---CTATTTAGA-CCAATGATGTGATTTTCCGAGC
* * * * * * * * *
23904919 ATGGACTGTACGGAAAATGGCTCGAAGGAATGGATCCTCTTGAATACTTTAAGGAACAAAAGTTA
48 ATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTTA
* * * * * * * *
23904984 TAAAAGAACTCGTAAAATTTTTTCAAGTTCGAAAGTTC-GATCGAGAACCAAGAACGAAAAAATT
113 TAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCAAGAAAGAAACAATT
*
23905048 CTCACATAAATAACTTTTTAA
177 CTAACATAAATAACTTTTT-A
*
23905069 TTTAAAGACCAAAAGTTGGTTACAAAATGACAATCTATTTAG---AATGATATGA-TTTCTCGAG
1 TTT----A-CAAAA--T-G-------A--A-AATCTATTTAGACCAATGATGTGATTTTC-CGAG
* * * *
23905130 CATGGAATGTTCAGAAAATTACGCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-GAAGT
47 CATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGT
* * ** * * ** * * * **
23905194 TA-AAAA-AAATCGTAAATTTTTCTCATGTTCAGAAGTTCGACAGAGAACCTAA-AGAGAAATTA
111 TATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACC-AAGAAAGAAACAA
* * *
23905256 TTATCACATAAATAAGTTTTTAA
175 TTCTAACATAAATAACTTTTT-A
* * *
23905279 TTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCGA-TTTCCTAAG
1 TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGACC-AATGATGTGATTTTCC-GAG
* * * * ** * *
23905343 CTTGGAATGTTTAGAAAACTGCTC-AAAGAAATGAATATTCTTGAATACTTTAAGGAATC-GAAG
47 CATGGAATGTTCAGAAAATTGCTCGAAAG-AATGGATCGTCTTGAATACTTTAACG-ACCAGAAG
* * * * * * *
23905406 TTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGAAAGTTCAGC-GTAGAACCAAGAGAGAAACT
110 TTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTG-AGAACCAAGAAAGAAACA
* * *
23905470 ATTCTCACCTAAATAAGTTTTTA
174 ATTCTAACATAAATAACTTTTTA
* ** * * * * * *
23905493 ATT-CAAAGACCAAAAGT-TATTTACA-AAATGACAACTACTTAGACTAAATGATACGATTTC-T
1 TTTACAAA-ATGAAAA-TCTATTTAGACCAATG---A-T--GT-GA-T---T-TTCCGA--GCAT
* * * * * *
23905554 CGTGCATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAATTTAAGGAATC-GAAGTT
50 -G-GAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTT
* * * * *
23905618 ATAAAAGAACTCGTAAAAGTTTGTCAACTTCGGAAGTTCGGCCT-AGAACCAAGAGAGAAACTAT
112 ATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGG-CTGAGAACCAAGAAAGAAACAAT
* * * *
23905682 TCTCACCTAAATAAGTTTTCAA
176 TCTAACATAAATAACTTTT-TA
* * * *
23905704 TTGAAAGACCAAAAGTTGTTTACAAAAT-GATTTAGACTAAATGATGCGA-TTTCTCGAGCATGG
1 TT----TA-CAAAA--TG-----AAAATCTATTTAGAC-CAATGATGTGATTTTC-CGAGCATGG
* * * * * *
23905767 AATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAATC-GAAGTTACAA
52 AATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTTATAA
* * * * * *
23905831 AAGAACTCGTAAAAGGTTT-TCAAGTTCGAAAGTTCGCCCGGGAACCAA-AAGAGAAACAATTCT
116 AAGAACTTGTAAAA-GTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAA-AGAAACAATTCT
* * *
23905894 CACCTAAATAAGTTTTTAA
179 AACATAAATAACTTTTT-A
* * *
23905913 TTCAAATACCAAAAGTAGTTTACAAAATGACAACTATTCAGACCTAATGATGTGATTTCCCAAGC
1 TT----TA-CAAAA-T-G-----AAAAT-----CTATTTAGACC-AATGATGTGATTTTCCGAGC
* * * * * * * *
23905978 ATGGACTATAT-GGAAAGTTGC-CAGAAGGAATGGATCGTCTTGAATACTTTAATGA-AAAAAGT
48 ATGGAATGT-TCAGAAAATTGCTC-GAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGT
** * * * * *
23906040 TATAAAAGAACTCATTAAAGTTTGTCAAGTTCGGAAGTTCGACCGAGAACAAAGAAAGAAACAAT
111 TATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAAT
*
23906105 TCTAACATAAATAACTTTTTT
176 TCTAACATAAATAACTTTTTA
* * * * *
23906126 TTTACAAAATGACAATCTATTTAGAACAATTGTTGTGA-TTTCTCGAGCACGGAATGTT-TGAAA
1 TTTACAAAATGAAAATCTATTTAGACCAA-TGATGTGATTTTC-CGAGCATGGAATGTTCAG-AA
* * * * * * * * * *
23906189 AATTGCTCCAAGGAATGGATCGTCTTGAATTCTCTAAGGAACAAAACTTAAAAAAGAACTCGTAA
63 AATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTTATAAAAGAACTTGTAA
* * * * * * *
23906254 AAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCATA-ATAGAGAAACTATTATCACCTAAATAA
128 AAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCA-AGA-A-AGAAACAATTCTAACATAAATAA
*
23906318 GTTTTTAA
190 CTTTTT-A
*
23906326 TTCGAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGTGA-TTTCCTGAG
1 TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGACC-AATGATGTGATTTTCC-GAG
* * * * *
23906390 CTTGGAATGCTCA-AGGAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACC-GAAG
47 CATGGAATGTTCAGA-AAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAG
* * * * * * * * *
23906453 TTATAAAAGAACTTGTAAAAGTTTGTCAACTTCGAAAGTTCGACCGTGAACAAAGAGAGAAACTA
110 TTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAA
* *
23906518 TTCTCACCA-AAATAAGTTTTTAA
175 TTCT-AACATAAATAACTTTTT-A
* * * *
23906541 TTCAAAGACCAAAAGCTGTTTACAAAATGACAACTATTTAGACCAAATGATTTGA-ATTCTCGAA
1 TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGACC-AATGATGTGATTTTC-CGAG
* ** *
23906605 CATTGAATGCTT--GAAAATTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAACC-GAAG
47 CATGGAATG-TTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAG
* * * *
23906667 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTCGG-TCGAGAACCAAGAGAGATACA
110 TTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCAAGAAAGAAACA
* * ** *
23906731 ATTCAAAGACCAA-AA----GTA
174 ATTCTAACATAAATAACTTTTTA
** * * * * * * * *
23906749 GTTTACAAAATGTCAA-CTATTTAGATCTAGTGATGCGATTTCCCAAGCATGGACTGTACGAAAA
1 -TTTACAAAATGAAAATCTATTTAGA-CCAATGATGTGATTTTCCGAGCATGGAATGTTC-AGAA
* * * * * *
23906813 AATGGC-CGAAGGAATGGATCCTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTTGTAA
63 AATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTTATAAAAGAACTTGTAA
* * * * *
23906877 AAGTTTGTCAAG-TT-GAATGTT-TGATCGAGAACCAAGAAAGAAAAAATTGTCACATAAATAAC
128 AAGTTTGTCAAGTTTGGAA-GTTCGGCT-GAGAACCAAGAAAGAAACAATTCTAACATAAATAAC
23906939 TTTTTAA
191 TTTTT-A
* *
23906946 TTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATATGA-TTTCTCGA
1 TTT----A-CAAAA--TG--------A--A-AATCTATTTAGACCAA-TGATGTGATTTTC-CGA
* * * * *
23907010 GCATGGAATGTTCAGAAAGTTACGCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-GAAG
46 GCATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAG
* ** * * * * * * *
23907074 TTA-AAAAAAACTCATAAATGTTTGTCATGTTCGGAAGTTCGACT-AGAACCAAGAGAGGAACTA
110 TTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAA
* *
23907137 -T-TATCATCCAAATAAGTTTTTAA
175 TTCTAACAT--AAATAACTTTTT-A
* * *
23907160 TTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATG-CACTTTCCCGAG
1 TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGACC-AATGATGTGA-TTTTCCGAG
* * * * * * *
23907224 CATGGATTGTTC-GAAATATGGCTC-AGAGGAATGGATCGTCTTGAATATTTTAAGGAACAAAAG
47 CATGGAATGTTCAGAAA-ATTGCTCGA-AAGAATGGATCGTCTTGAATACTTTAACGACCAGAAG
** * * * * * * *
23907287 TTATAAAAGAACTCATAACAGTTTGTCAAGTTCGGAAGTTC-GATCGTGAACAAAGAGAGAAACT
110 TTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCAAGAAAGAAACA
* *
23907351 ATTCTCACCA-AAATAAGTTTTTAA
174 ATTCT-AACATAAATAACTTTTT-A
* * * *
23907375 TTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGAGA-ATTCTCGAA
1 TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGACC-AATGATGTGATTTTC-CGAG
* * ** *
23907439 CATGGAATGCTCAAAAAATTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAACC-GAAGT
47 CATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGT
* ** * *
23907503 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTTAAAAGTTCGG-TCGAGAACCAAGAGAGATACAA
111 TATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCAAGAAAGAAACAA
* * *
23907567 TTCTCACCTAAATAAGTTTTTAA
175 TTCTAACATAAATAACTTTTT-A
* * * * *
23907590 TTCAAAGACCAAAAGTAGTTTACAAAAATGTCAACTATTTAGATCTAGTGATGCGA-TTTCCTAA
1 TT----TA-CAAAA-T-G------AAAA--T---CTATTTAGA-CCAATGATGTGATTTTCC-GA
* * * * * * * * *
23907654 GCATGGACTGTAC-GAAAAATGACCCGAAGGAATGGATCCTCTTGAATACTTTAAGGAACAAAAG
46 GCATGGAATGTTCAGAAAATTG-CTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAG
* * ** * * *
23907718 TTATAAAAGAACTCGTAAATGTTTGTCAAGTGCGGATGTT-TGATCGAGAACCAAGAAAGAAGA-
110 TTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCAAGAAAGAA-AC
* * *
23907781 AATTGTCACATAAGTAACTTTTAATTTAAAGACCAAAA
173 AATTCTAACATAAATAAC--TT--TTT----------A
* * * *
23907819 GTTGTTTACAAAATGACAATCTATTTAGAACAATTGATATGA-TTTCTCGACCATGGAATGTTCA
1 ----TTTACAAAATGAAAATCTATTTAGACCAA-TGATGTGATTTTC-CGAGCATGGAATGTTCA
* * * * *
23907883 AAAAATTGCGT-GAAGGAATGGATCTTCTTGAATACTTTAAGGAACC-GAAGTTA-AAAAAAACT
60 GAAAATTGC-TCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTTATAAAAGAACT
* * * * * * *
23907945 CGTAAATGTTTGTCATGTTTGGAAGTTCGGCCT-AGAACCAAGAGAGGAACTA-T-TATCATCCA
123 TGTAAAAGTTTGTCAAGTTTGGAAGTTCGG-CTGAGAACCAAGAAAGAAACAATTCTAACAT--A
*
23908007 AATAAGTTTTTAA
185 AATAACTTTTT-A
*
23908020 TTTAAAGACTAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCT-ATTTCCCGAG
1 TTT----AC-AAAA--TG-----AAAAT-----CTATTTAGACC-AATGATG-TGATTTTCCGAG
* * * * * * * *
23908084 CATGGATTGTTCGGAAAATGGCTC-AGAGGAATGGATCATCTTGAATACTTTAAGGAACA-AAAT
47 CATGGAATGTTCAGAAAATTGCTCGA-AAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGT
** * * * * * *
23908147 TA-ATAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTC-GATCGACAACCTAGAGAGAAATA
111 TATA-AAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCAAGAAAGAAACA
*
23908210 ATTCTCACATAAATAACTTTTTAATTCGAAGACCGAAA
174 ATTCTAACATAAATAAC--TTT--TT-----------A
* * ** * * *
23908248 GTTGTTTACAAAATGACAATCTATTTAGAACAATTGATGCAATTTCCCGAGAATGGAATGTT-TG
1 ----TTTACAAAATGAAAATCTATTTAGACCAA-TGATGTGATTTTCCGAGCATGGAATGTTCAG
** * * * * * *
23908312 AAAAATTGCTCGAGGGTATAGATCGTCTTGAATAATTTAAGGAGCC-GAAGTTAAAAAAGAACTC
61 -AAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGA-CCAGAAGTTATAAAAGAACTT
* * * ** * * * *
23908376 GTAAAGGTTTTTCAAGTTCGGAAGTTCGGCCAAGAACCTAGAAAGAAACTATTCTCACCTAAATA
124 GTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAATTCTAACATAAATA
* *
23908441 AGTTTTCAA
189 ACTTTT-TA
* * * * *
23908450 TTGAAAGACCAAAAGTTGTTTACAAAAT-GATTTAGACTAAATGATGCGA-TTTCTCAAGCATGG
1 TT----TA-CAAAA--TG-----AAAATCTATTTAGAC-CAATGATGTGATTTTC-CGAGCATGG
** * * * *
23908513 AATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAATC-GAAGTTATAA
52 AATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTTATAA
* * ** ** * * *
23908577 AAGAACTCGTAAAA-TTTTTCAAGTGCGGAAGTTCACCCGGGAACCAA-AAGAGAAACAATTCTC
116 AAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAA-AGAAACAATTCTA
* *
23908640 ACCTAAATAAGTTTTTAA
180 ACATAAATAACTTTTT-A
* * * *
23908658 TTCAAATACCAAAAGTAGTTTACAAAAAGACAACTATTCAGACCTAATGATGTGATTTCCCAAGC
1 TT----TA-CAAAA-T-G--------AA-A-ATCTATTTAGACC-AATGATGTGATTTTCCGAGC
* * * * * * ** *
23908723 ATGGACTGTAT-GGAAAGTTGCTCGAAGGAATGGACCGTCTTGAATACTTTAATGAAGAAAAGTT
48 ATGGAATGT-TCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTT
** * * * * * * **
23908787 ATAAAAAGAACTCATTAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAAAGAAACAA
112 AT-AAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCA-AGAAAGAAACAA
23908851 TTCTAACATAAATAACTTTTT-
175 TTCTAACATAAATAACTTTTTA
* * * * * * *
23908872 TTTACAAAATGACAATCTATTTAGAACAATTGTTGCGA-TTTCTCGAGTAAGGAATGTT-GGAAA
1 TTTACAAAATGAAAATCTATTTAGACCAA-TGATGTGATTTTC-CGAGCATGGAATGTTCAG-AA
* * * * * * * * *
23908935 AATTGCTCGAAGGAATGGATCATCTTGAATTA-TCTAAGGAACAAAAGATAAAAAAGAACTCGTA
63 AATTGCTCGAAAGAATGGATCGTCTTGAA-TACTTTAACGACCAGAAGTTATAAAAGAACTTGTA
* * * * * * * * * *
23908999 AAAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCAATAGAGAAACTATTATCACCTAAATAAGT
127 AAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAATTCTAACATAAATAACT
*
23909064 TCTTAA
192 T-TTTA
*
23909070 TTGAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACACAAATGATGTGA-TTTCCTGAG
1 TT---TA-CAAAA--TG-----AAAAT-----CTATTTAGAC-C-AATGATGTGATTTTCC-GAG
* ** * *
23909134 CTTGGAATGTTCAGGGAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACC-GAAGT
47 CATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGT
* * * * * * * * *
23909198 TATAAAAGAACCTGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAAACTA
111 TATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAG-AAACAA
* * *
23909263 TTCTCACCA-AAATAAGGTTTTAA
175 TTCT-AACATAAATAA-CTTTTTA
* * *
23909286 TTCAAAGACCAAAAGCTGTTTACAAAATAACAACTATTT-GACCAAATGATGCGA-TTTCTCGAA
1 TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGACC-AATGATGTGATTTTC-CGAG
** ** *
23909349 CATGGAATCCTC-GAAAAATTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAACC-GAAG
47 CATGGAATGTTCAG-AAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAG
* * * * * *
23909412 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTC-GATCGAGAACCAAGAGAGAATTC
110 TTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCAAGAAAGAA-AC
* * *
23909476 AATTCTCACCTAAATAAGTTTTTAA
173 AATTCTAACATAAATAACTTTTT-A
* * * * *
23909501 TTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTAATGATGCGATTTCCCAAGC
1 TT----TA-CAAAA-T-G-----AAAA--T---CTATTTAGA-CCAATGATGTGATTTTCCGAGC
* * * * * * * * *
23909566 ATGGACTGTACGGAAAATGGCTCG-AGGAATGGATCCTCTTGAATACTTTTA-GTAACAAAAGTT
48 ATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTT
* * * * *
23909629 ATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTT-TGATCGAGAACCAAGAAAGAAAAAAT
112 ATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCAAGAAAGAAACAAT
* *
23909693 TGTCACATAAATAACTTTTTAA
176 TCTAACATAAATAACTTTTT-A
* * *
23909715 TTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATATGATTTCCCGAG
1 TTT----A-CAAAA--TG--------A--A-AATCTATTTAGACCAA-TGATGTGATTTTCCGAG
* * * *
23909780 CATGGAATGTTCAG-AAATTGCGCGAAGGAACGGATCGTCTTGAATACTTTAAGGAACC-GAAG-
47 CATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGT
* * * * * * * * *
23909842 T-TAAAA-AATTTCGTAAATGTTTGTCATGTTCGAAAGTTCGGCCGAGAACC-AGAGAGGAACTA
111 TATAAAAGAACTT-GTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAA
* *
23909904 -T-TATCATCCAAATAAGTTTTTAA
175 TTCTAACAT--AAATAACTTTTT-A
* *
23909927 TTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCGA-TTTCTCGAG
1 TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGACC-AATGATGTGATTTTC-CGAG
* * * * * * * *
23909991 GATGGATTGTTCCGAAAATGGCTAGAGGAATAGAGGGAAGGATCGTCTTGAATACTTTAAGGAAC
47 CATGGAATGTTCAGAAAATTGCT---CGAA-AGA---ATGGATCGTCTTGAATACTTTAACGACC
* ** * * *
23910056 AAAAGTTATAAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTC-GATCGAGAACTACAG--A
105 AGAAGTTATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCA-AGAAA
**
23910118 GAAACAATTCTCTCATAAATAACTTTTTAATTCAAACCAAAA
168 GAAACAATTCTAACATAAATAAC--TTT--TT---------A
* * * * * * * *
23910160 GTTTTTTCAAAATGACAATCTATTTAGAACAATTGATGCGATTTCCCGAGAATGTAATGTT-TGA
1 ---TTTACAAAATGAAAATCTATTTAGACCAA-TGATGTGATTTTCCGAGCATGGAATGTTCAG-
* ** * * * * * *
23910224 AAAATGGCTCGAGGGTATAGATCGTCTTGAATAATTTAAGGAACC-GAAGTTAAAAAAGAACTCG
61 AAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTTATAAAAGAACTTG
* * * * * * * * * *
23910288 TAAAGGTTTTTCAAGTTCGGAAGTTCGGACCGAGAACC-TG-GAGAGA-ATTTTTATCAGCTAAA
125 TAAAAGTTTGTCAAGTTTGGAAGTTCGG-CTGAGAACCAAGAAAGAAACAATTCTAACA--TAAA
** *
23910350 TAGGTTTTAA
187 TAACTTTTTA
* * * * *
23910360 TTCAAAGACCAAAAGTTGTTTACAAAAT-GATTTAGACTAAATGATGCGA-TTTCTCAAGCATGG
1 TT----TA-CAAAA--TG-----AAAATCTATTTAGAC-CAATGATGTGATTTTC-CGAGCATGG
** * * * *
23910423 AATGTTTGGAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAATC-GAAGTTATAA
52 AATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTTATAA
* * ** ** * *
23910486 AAGAACTCGTAAAA-TTTTTCAAGTGCGGAAGTTCACCCGGGAACCAA-AAGAGAAAACAATTCT
116 AAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAA-AG-AAACAATTCT
* * *
23910549 CACCTAAATAAGTTTTTAA
179 AACATAAATAACTTTTT-A
* * * *
23910568 TTCAAATACCAAAAGTAGTTTACAAAAAGACAACTATTCAGACCTAATGATGTGATTTCCCAAGC
1 TT----TA-CAAAA-T-G--------AA-A-ATCTATTTAGACC-AATGATGTGATTTTCCGAGC
* * * * * * ** *
23910633 ATGGACTG-T-ATGGAAAGTGCTCGAAGGAATGGACCGTCTTGAATACTTTAATGAAGAAAAGTT
48 ATGGAATGTTCA-GAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTT
** * * * * * * **
23910696 ATAAAAGAACTCATTAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAAAGAAACAAT
112 ATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCA-AGAAAGAAACAAT
* *
23910760 TCTAACAAAAATAACTTTTTT
176 TCTAACATAAATAACTTTTTA
* * * * * * *
23910781 TTTACAAAATGACAATCTA-TTAGAACAATTGTTGCGA-TTTCTCGAGTAAGGAATGTT-GGAAA
1 TTTACAAAATGAAAATCTATTTAGACCAA-TGATGTGATTTTC-CGAGCATGGAATGTTCAGAAA
* * * * * * * * *
23910843 ATTGCTCGAAGGAATGGATCATCTTGAATTA-TCTAAGGAACAAAAGATAAAAAAGAACTCGTAA
64 ATTGCTCGAAAGAATGGATCGTCTTGAA-TACTTTAACGACCAGAAGTTATAAAAGAACTTGTAA
* * * * * * * * * * *
23910907 AAGTTTGTCAGGTTCGAAAGTTCGGCTGGGAACCAATAGAGAAACTATTATCACCTAAATAAGTT
128 AAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAATTCTAACATAAATAACTT
*
23910972 CTTAA
193 -TTTA
* *
23910977 TTGAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAATGATGTGA-TTTCCTGAGCT
1 TT---TA-CAAAA--TG-----AAAAT-----CTATTTAGACCAATGATGTGATTTTCC-GAGCA
** * * *
23911041 TGGAATGTTCAG-GGATTGCTCGAAAGAATAGATCATCTTGAATACTTTAAGGAACC-GAAGTTA
49 TGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTTA
* * * * * * * *
23911104 TAAAAGAAAACCTGTAAAAGTTTGTCAA-CTTCGAAGTTCGGCCGTGAACAAAGAGAGAAACTAT
113 TAAAAG--AACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAAT
* *
23911168 TCTCACCA-AAATAAGTTTTTAA
176 TCT-AACATAAATAACTTTTT-A
* * * * *
23911190 TTCAAAGACCAAAAGCTGTTTACAAAATAACAACTATTTGGACAAATGATGCGA-TTTCTCGAAC
1 TT----TA-CAAAA--TG-----AAAAT-----CTATTTAGACCAATGATGTGATTTTC-CGAGC
** ** *
23911254 ATGGAATCCTC-GAAAAATTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAACC-GAAGT
48 ATGGAATGTTCAG-AAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGT
* * * * * *
23911317 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTC-GATCG-GAACCAAGAGAGATACAA
111 TATAAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCAAGAAAGAAACAA
* * *
23911380 TTCTCACCTAAATAAGTTTTTAA
175 TTCTAACATAAATAACTTTTT-A
* * * * *
23911403 TTCAAAGACCAAAAGTAGTTTTCAAAATGTCACTATTTAGATCTAATGATGCGA-TTCCCAAGCA
1 TT----TA-CAAAA-T-G-----AAAA--T--CTATTTAGA-CCAATGATGTGATTTTCCGAGCA
* * * * * * * * *
23911467 TGGACTGTACGGAAAATGGCTCG-AGGAATGGATCCTCTTGAATACTTTTA-GTAACAAAAGTTA
49 TGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGTTA
* * * * *
23911530 TAAAAGAACTCGTAAAAAGTTTGTCAAGTTTGAAAGTT-TGATCGAGAACCAAGAAAGAAAAAAT
113 TAAAAGAACTTGT-AAAAGTTTGTCAAGTTTGGAAGTTCGGCT-GAGAACCAAGAAAGAAACAAT
23911594 GTC--ACATAAAAATAACTTTTTAA
176 -TCTAACAT--AAATAACTTTTT-A
* *
23911617 TTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATATGA-TTTCCGAG
1 TTT----A-CAAAA--TG--------A--A-AATCTATTTAGACCAA-TGATGTGATTTTCCGAG
* * * *
23911681 CATGGAATGTTCAGAAAA-TGCGCG-AAGGACGGATCGTCTTGAATACTTTAAGGAACC-GAAGT
47 CATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAACG-ACCAGAAGT
* * * * * * * *
23911743 TA-AAAA-AATTTCGTAAATGTTTGTCATG-TTCGAAGTTCGGCCGAGAGACCAAGAGAGGAACT
111 TATAAAAGAACTT-GTAAAAGTTTGTCAAGTTTGGAAGTTCGGCTGAGA-ACCAAGAAAGAAACA
* *
23911805 A-T-TATCATCAAATAAGTTTTTAA
174 ATTCTAACAT-AAATAACTTTTT-A
* * * * *
23911828 TTCAAAGACCAAGGTGTTTATAAAATGACAACTATTAGACCAAATGATGCGA-TTTCTCGAGGAT
1 TTTACA-A--AA--TG-----AAAAT--CTA-T-TTAGACC-AATGATGTGATTTTC-CGAGCAT
* * * * * * * *
23911892 GGATTGTTCCGAAAATGGC-CTAGAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTAT
50 GGAATGTTCAGAAAATTGCTCGA-AAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTTAT
** *
23911956 AAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCG
114 AAAAGAACTTGTAAAAGTTTGTCAAGTTTGGAAGTTCG
23911994 ATCGAGAACC
Statistics
Matches: 7369, Mismatches: 1335, Indels: 1515
0.72 0.13 0.15
Matches are distributed among these distances:
190 4 0.00
191 57 0.01
192 67 0.01
193 7 0.00
194 7 0.00
195 221 0.03
196 363 0.05
197 142 0.02
198 17 0.00
199 28 0.00
200 9 0.00
201 19 0.00
202 36 0.00
203 23 0.00
204 23 0.00
205 22 0.00
206 31 0.00
207 110 0.01
208 176 0.02
209 296 0.04
210 269 0.04
211 153 0.02
212 369 0.05
213 486 0.07
214 1094 0.15
215 1997 0.27
216 758 0.10
217 308 0.04
218 26 0.00
219 72 0.01
220 21 0.00
221 58 0.01
222 13 0.00
223 15 0.00
224 9 0.00
225 4 0.00
226 4 0.00
227 7 0.00
228 18 0.00
229 12 0.00
231 6 0.00
232 3 0.00
233 7 0.00
236 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (196 bp):
TTTACAAAATGAAAATCTATTTAGACCAATGATGTGATTTTCCGAGCATGGAATGTTCAGAAAAT
TGCTCGAAAGAATGGATCGTCTTGAATACTTTAACGACCAGAAGTTATAAAAGAACTTGTAAAAG
TTTGTCAAGTTTGGAAGTTCGGCTGAGAACCAAGAAAGAAACAATTCTAACATAAATAACTTTTT
A
Found at i:23906446 original size:217 final size:213
Alignment explanation
Indices: 23906126--23906726 Score: 783
Period size: 217 Copynumber: 2.8 Consensus size: 213
23906116 TAACTTTTTT
* * * ** *
23906126 TTTACAAAATGACAATCTATTTAGAACAATTGTTGTGATTTCTCGAGCACGGAATGTTTGAAAAA
1 TTTACAAAATGACAA-CTATTTAGACCAAATGATGTGATTTCTCGAGCTTGGAATG-CTG-AAAA
* * * ** * *
23906191 TTGCTCCAAGGAATGGATCGTCTTGAATTCTCTAAGGAACAAAACTTAAAAAAGAACTCGTAAAA
63 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
* * *
23906256 GTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCATAATAGAGAAACTATTATCACCTAAATAAGTT
128 GTTTGTCAAGTTCGAAAGTTCGGCCGGGAA-CA-AAGAGAGAAACTATTATCACCAAAATAAGTT
* *
23906321 TTTAATTCGAAGACCAAAAGTTG
191 TTTAATTCAAAGACCAAAAGCTG
* *
23906344 TTTATAAAATGACAACTATTTAGACCAAATGATGTGATTTC-CTGAGCTTGGAATGCTCAAGGAA
1 TTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTC-GAGCTTGGAATGCTGAA--AA
* * *
23906408 TTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAA
63 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
* * * *
23906473 GTTTGTCAACTTCGAAAGTTCGACCGTGAACAAAGAGAGAAACTATTCTCACCAAAATAAGTTTT
128 GTTTGTCAAGTTCGAAAGTTCGGCCGGGAACAAAGAGAGAAACTATTATCACCAAAATAAGTTTT
23906538 TAATTCAAAGACCAAAAGCTG
193 TAATTCAAAGACCAAAAGCTG
* * *
23906559 TTTACAAAATGACAACTATTTAGACCAAATGATTTGAATTCTCGAACATT-GAATGCTTGAAAAT
1 TTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTCGAGC-TTGGAATGC-TGAAAAT
*
23906623 TGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
64 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * *
23906688 TTTGTCAAGTTTGAAAGTTCGGTCGAGAACCAAGAGAGA
129 TTTGTCAAGTTCGAAAGTTCGGCCGGGAACAAAGAGAGA
23906727 TACAATTCAA
Statistics
Matches: 335, Mismatches: 42, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
214 97 0.29
215 98 0.29
216 10 0.03
217 116 0.35
218 14 0.04
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (213 bp):
TTTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTCGAGCTTGGAATGCTGAAAATTG
CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTT
TGTCAAGTTCGAAAGTTCGGCCGGGAACAAAGAGAGAAACTATTATCACCAAAATAAGTTTTTAA
TTCAAAGACCAAAAGCTG
Found at i:23907160 original size:214 final size:214
Alignment explanation
Indices: 23906730--23912003 Score: 4997
Period size: 215 Copynumber: 24.8 Consensus size: 214
23906720 AGAGAGATAC
* * * * * * *
23906730 AATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTAGTGATGCGATTTCCCAA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
* * * * * **
23906795 GCATGGACTGTACGAAAAAATGGC-CGAAGGAATGGATCCTCTTGAATACTTTAAGGAACAAAAG
66 GCATGGAATGTTCG-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * * **
23906859 TTATAAAAGAACTTGTAAAAGTTTGTCAAGTT--GAATGTTTGATCGAGAACCAAGAAAGAAAAA
130 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAA-GTTCGATCGAGAACCAAGAGAGAAACT
* * *
23906922 ATTGTCACATAAATAACTTTTT
194 ATTCTCAC-CAAATAAGTTTTT
* * **
23906944 AATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATATGATTTCTCG
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATTTCTCG
* * * *
23907009 AGCATGGAATGTTCAGAAAGTTACGCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
65 AGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * * * * *
23907074 TTA-AAAAAAACTCATAAATGTTTGTCATGTTCGGAAGTTCGA-CTAGAACCAAGAGAGGAACTA
130 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAACTA
*
23907137 TTATCATCCAAATAAGTTTTT
195 TTCTCA-CCAAATAAGTTTTT
* * *
23907158 AATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGC-ACTTTCCCG
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGA-TTTCTCG
* * * **
23907222 AGCATGGATTGTTC-GAAATATGGCTC-AGAGGAATGGATCGTCTTGAATATTTTAAGGAACAAA
65 AGCATGGAATGTTCGGAAA-ATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* * * *
23907285 AGTTATAAAAGAACTCATAACAGTTTGTCAAGTTCGGAAGTTCGATCGTGAACAAAGAGAGAAAC
128 AGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAAC
23907350 TATTCTCACCAAAATAAGTTTTT
193 TATTCTCACC-AAATAAGTTTTT
* * *
23907373 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGAGAATTCTCGA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
* * ** *
23907438 ACATGGAATGCTCAAAAAATTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
66 GCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
*** * * *
23907503 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTTAAAAGTTCGGTCGAGAACCAAGAGAGATACAAT
131 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAACTAT
23907568 TCTCACCTAAATAAGTTTTT
196 TCTCACC-AAATAAGTTTTT
* * * * *
23907588 AATTCAAAGACCAAAAGTAGTTTACAAAAATGTCAACTATTTAGATCTAGTGATGCGATTTC-CT
1 AATTCAAAGACCAAAAGTTGTTTAC-AAAATGACAACTATTTAGAACAAATGATGCGATTTCTC-
* * * * * * **
23907652 AAGCATGGACTGTAC-GAAAAATGACCCGAAGGAATGGATCCTCTTGAATACTTTAAGGAACAAA
64 GAGCATGGAATGTTCGGAAAATTG-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* * * * *
23907716 AGTTATAAAAGAACTCGTAAATGTTTGTCAAGTGCGGATGTTTGATCGAGAACCAAGAAAGAAGA
128 AGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAA-A
* * *
23907781 -AATTGTCA-CATAAGTAA-CTTTT
192 CTATTCTCACCA-AA-TAAGTTTTT
* * **
23907803 AATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATATGATTTCTCG
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATTTCTCG
* ** *
23907868 ACCATGGAATGTTCAAAAAATTGCGT-GAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAA
65 AGCATGGAATGTTCGGAAAATTGC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
* * * * ** * *
23907932 GTTA-AAAAAAACTCGTAAATGTTTGTCATGTTTGGAAGTTCGGCCTAGAACCAAGAGAGGAACT
129 GTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAACT
*
23907996 ATTATCATCCAAATAAGTTTTT
194 ATTCTCA-CCAAATAAGTTTTT
* * * * * *
23908018 AATTTAAAGACTAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCTATTTCCCGA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
* * * * *
23908083 GCATGGATTGTTCGGAAAATGGCTC-AGAGGAATGGATCATCTTGAATACTTTAAGGAA-CAAAA
66 GCATGGAATGTTCGGAAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * *
23908146 TTA-ATAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGACAACCTAGAGAGAAA-T
130 TTATA-AAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAACT
* *
23908209 AATTCTCACATAAATAACTTTTT
194 -ATTCTCAC-CAAATAAGTTTTT
* * * * *
23908232 AATTCGAAGACCGAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATGCAATTTCCCG
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATTTCTCG
* * * * * * * *
23908297 AGAATGGAATGTTTGAAAAATTGCTCGAGGGTATAGATCGTCTTGAATAATTTAAGGAGCCGAAG
65 AGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * * ** * * *
23908362 TTAAAAAAGAACTCGTAAAGGTTTTTCAAGTTCGGAAGTTCGGCCAAGAACCTAGAAAGAAACTA
130 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAACTA
*
23908427 TTCTCACCTAAATAAGTTTTC
195 TTCTCACC-AAATAAGTTTTT
* *
23908448 AATTGAAAGACCAAAAGTTGTTTACAAAATG------ATTTAG-ACTAAATGATGCGATTTCTCA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAAC-AAATGATGCGATTTCTCG
* * *
23908506 AGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAATCGAAG
65 AGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * * * * *
23908571 TTATAAAAGAACTCGTAAAA-TTTTTCAAGTGCGGAAGTTC-ACCCGGGAACCAAAAGAGAAACA
130 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGA-TCGAGAACCAAGAGAGAAACT
23908634 ATTCTCACCTAAATAAGTTTTT
194 ATTCTCACC-AAATAAGTTTTT
* * * * * * * * *
23908656 AATTCAAATACCAAAAGTAGTTTACAAAAAGACAACTATTCAGACCTAATGATGTGATTTCCCAA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
* * * * ***
23908721 GCATGGACTGTAT-GGAAAGTTGCTCGAAGGAATGGACCGTCTTGAATACTTTAATGAAGAAAAG
66 GCATGGAATGT-TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * * * * * * *
23908785 TTATAAAAAGAACTCATTAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAAAGAAAC
130 TTAT-AAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCA-AGAGAGAAAC
* *
23908849 AATTCT-A--ACAT-A------
193 TATTCTCACCAAATAAGTTTTT
** * * *
23908861 AA-T---A-A-C---TTTTTTTTACAAAATGACAATCTATTTAGAACAATTGTTGCGATTTCTCG
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATTTCTCG
* * * * **
23908917 AGTAAGGAATGTT-GGAAAAATTGCTCGAAGGAATGGATCATCTTGAATTA-TCTAAGGAACAAA
65 AGCATGGAATGTTCGG-AAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAACCGA
* * * * * *
23908980 AGATAAAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCG-GCTGGGAACCAATAGAGAAA
128 AGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATC-GAGAACCAAGAGAGAAA
* *
23909044 CTATTATCACCTAAATAAGTTCTT
192 CTATTCTCACC-AAATAAGTTTTT
* * *
23909068 AATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACACAAATGATGTGATTTC-CT
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGA-ACAAATGATGCGATTTCTC-
* * * *
23909131 GAGCTTGGAATGTTCAGG-GAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACCGA
64 GAGCATGGAATGTTC-GGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* * ** * *
23909195 AGTTATAAAAGAAC-CTGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAA
128 AGTTATAAAAGAACTC-GTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAG-AA
*
23909259 ACTATTCTCACCAAAATAAGGTTTT
191 ACTATTCTCACC-AAATAAGTTTTT
* * *
23909284 AATTCAAAGACCAAAAGCTGTTTACAAAATAACAACTATTT-GACCAAATGATGCGATTTCTCGA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
* ** * *
23909348 ACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
66 GCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
* * * * *
23909413 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTCGATCGAGAACCAAGAGAGAATTCAA
131 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAA-ACTA
23909478 TTCTCACCTAAATAAGTTTTT
195 TTCTCACC-AAATAAGTTTTT
* * * * * *
23909499 AATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTAATGATGCGATTTCCCAA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
* * * * * * **
23909564 GCATGGACTGTACGGAAAATGGCTCG-AGGAATGGATCCTCTTGAATACTTTTAGTAACAAAAGT
66 GCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
* * * * **
23909628 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAAAAAAT
131 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAACTAT
* * *
23909693 TGTCACATAAATAACTTTTT
196 TCTCAC-CAAATAAGTTTTT
* * ** *
23909713 AATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATATGATTTCCCG
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATTTCTCG
* * *
23909778 AGCATGGAATGTTCAG-AAATTGCGCGAAGGAACGGATCGTCTTGAATACTTTAAGGAACCGAAG
65 AGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
** * * * ** *
23909842 TTA-AAAA-ATTTCGTAAATGTTTGTCATGTTCGAAAGTTCGGCCGAGAACC-AGAGAGGAACTA
130 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAACTA
*
23909904 TTATCATCCAAATAAGTTTTT
195 TTCTCA-CCAAATAAGTTTTT
* *
23909925 AATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAAATGATGCGATTTCTCGA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
* * * * *
23909990 GGATGGATTGTTCCGAAAATGGCTAG-AGGAATAGAGGGAAGGATCGTCTTGAATACTTTAAGGA
66 GCATGGAATGTTCGGAAAATTGCTCGAAGGAAT--------GGATCGTCTTGAATACTTTAAGGA
** * * *
23910054 ACAAAAGTTATAAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAA-CTACAGA
123 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGA
* * * *
23910118 GAAACAATTCTCTCATAAATAACTTTTT
188 GAAACTATTCTCAC-CAAATAAGTTTTT
* * *
23910146 AATTC-AA-ACCAAAAGTT-TTTTCAAAATGACAATCTATTTAGAACAATTGATGCGATTTCCCG
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATTTCTCG
* * * * * * * * *
23910208 AGAATGTAATGTTTGAAAAATGGCTCGAGGGTATAGATCGTCTTGAATAATTTAAGGAACCGAAG
65 AGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * * * ** *
23910273 TTAAAAAAGAACTCGTAAAGGTTTTTCAAGTTCGGAAGTTCGGACCGAGAACCTGGAGAG-AATT
130 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTC-GATCGAGAACCAAGAGAGAAACT
* * * *
23910337 TTTATCAGCTAAAT-AGGTTTT
194 ATTCTCA-CCAAATAAGTTTTT
*
23910358 AATTCAAAGACCAAAAGTTGTTTACAAAATG------ATTTAG-ACTAAATGATGCGATTTCTCA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAAC-AAATGATGCGATTTCTCG
* * *
23910416 AGCATGGAATGTTTGGAAAA-TGCTCGAAGGAATGGATCGTCTTGAATAGTTTAAGGAATCGAAG
65 AGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * * * *
23910480 TTATAAAAGAACTCGTAAAA-TTTTTCAAGTGCGGAAGTTC-ACCCGGGAACCAAAAGAGAAAAC
130 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGA-TCGAGAACCAAGAGAG-AAAC
*
23910543 AATTCTCACCTAAATAAGTTTTT
193 TATTCTCACC-AAATAAGTTTTT
* * * * * * * * *
23910566 AATTCAAATACCAAAAGTAGTTTACAAAAAGACAACTATTCAGACCTAATGATGTGATTTCCCAA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
* * * * ***
23910631 GCATGGACTGTAT-GG-AAAGTGCTCGAAGGAATGGACCGTCTTGAATACTTTAATGAAGAAAAG
66 GCATGGAATGT-TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * * * * * * * *
23910694 TTATAAAAGAACTCATTAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAAAGAAACA
130 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCA-AGAGAGAAACT
*
23910758 ATTCT-AACAAA-AA-----T
194 ATTCTCACCAAATAAGTTTTT
* * * *
23910772 AACTT------------TTTTTTTACAAAATGACAATCTA-TTAGAACAATTGTTGCGATTTCTC
1 AA-TTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATTTCTC
* * * * **
23910824 GAGTAAGGAATGTT-GGAAAATTGCTCGAAGGAATGGATCATCTTGAATTA-TCTAAGGAACAAA
64 GAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAACCGA
* * * * * * *
23910887 AGATAAAAAAGAACTCGTAAAAGTTTGTCAGGTTCGAAAGTTCG-GCTGGGAACCAATAGAGAAA
128 AGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATC-GAGAACCAAGAGAGAAA
* *
23910951 CTATTATCACCTAAATAAGTTCTT
192 CTATTCTCACC-AAATAAGTTTTT
* * * *
23910975 AATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAG-ACCAATGATGTGATTTC-CTG
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTC-G
* * * * *
23911037 AGCTTGGAATGTTCAGG--GATTGCTCGAAAGAATAGATCATCTTGAATACTTTAAGGAACCGAA
65 AGCATGGAATGTTC-GGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
* ** * *
23911100 GTTATAAAAGAAAAC-CTGTAAAAGTTTGTCAACTTC-GAAGTTCGGCCGTGAACAAAGAGAGAA
129 GTTATAAAAG--AACTC-GTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAA
23911163 ACTATTCTCACCAAAATAAGTTTTT
191 ACTATTCTCACC-AAATAAGTTTTT
* * *
23911188 AATTCAAAGACCAAAAGCTGTTTACAAAATAACAACTATTT-GGACAAATGATGCGATTTCTCGA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
* ** * *
23911252 ACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
66 GCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
* * * * *
23911317 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTCGATCG-GAACCAAGAGAGATACAAT
131 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAACTAT
23911381 TCTCACCTAAATAAGTTTTT
196 TCTCACC-AAATAAGTTTTT
* * * * * * *
23911401 AATTCAAAGACCAAAAGTAGTTTTCAAAATGTC-ACTATTTAGATCTAATGATGCGA-TTCCCAA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
* * * * * * **
23911464 GCATGGACTGTACGGAAAATGGCTCG-AGGAATGGATCCTCTTGAATACTTTTAGTAACAAAAGT
66 GCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
* * * * **
23911528 TATAAAAGAACTCGTAAAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAAAAAA
131 TATAAAAGAACTCGT-AAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAACTA
* ** *
23911593 TGTCACATAAAAATAACTTTTT
195 T-TCTCA-CCAAATAAGTTTTT
* * **
23911615 AATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACAATTGATATGATTTC-CG
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGAACAAATGATGCGATTTCTCG
* * *
23911679 AGCATGGAATGTTCAGAAAA-TGCGCGAAGG-ACGGATCGTCTTGAATACTTTAAGGAACCGAAG
65 AGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * * ** *
23911742 TTA-AAAA-AATTTCGTAAATGTTTGTCATGTTC-GAAGTTCGGCCGAGAGACCAAGAGAGGAAC
130 TTATAAAAGAA-CTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGA-ACCAAGAGAGAAAC
* *
23911804 TATTATCATCAAATAAGTTTTT
193 TATTCTCACCAAATAAGTTTTT
* * *
23911826 AATTCAAAGACC--AAGGTGTTTATAAAATGACAACTA-TTAGACCAAATGATGCGATTTCTCGA
1 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
* * * * * **
23911888 GGATGGATTGTTCCGAAAATGGC-CTAGAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAG
66 GCATGGAATGTTCGGAAAATTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
*
23911952 TTATAAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACC
130 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACC
23912004 TACAGAAANN
Statistics
Matches: 4160, Mismatches: 707, Indels: 389
0.79 0.13 0.07
Matches are distributed among these distances:
194 4 0.00
195 131 0.03
196 76 0.02
197 78 0.02
198 4 0.00
199 1 0.00
200 4 0.00
201 2 0.00
202 2 0.00
203 3 0.00
204 2 0.00
205 14 0.00
206 23 0.01
207 91 0.02
208 181 0.04
209 119 0.03
210 34 0.01
211 143 0.03
212 311 0.07
213 358 0.09
214 810 0.19
215 1151 0.28
216 402 0.10
217 41 0.01
218 13 0.00
219 88 0.02
220 12 0.00
221 62 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (214 bp):
AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGAACAAATGATGCGATTTCTCGA
GCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
TATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCAAGAGAGAAACTAT
TCTCACCAAATAAGTTTTT
Found at i:23911581 original size:213 final size:212
Alignment explanation
Indices: 23910780--23912003 Score: 1202
Period size: 213 Copynumber: 5.8 Consensus size: 212
23910770 ATAACTTTTT
* * * * *
23910780 TTTTACAAAATGACAATCTA-TTAGAACAATTGTTGCGATTTCTCGAGTAAGGAATGTT-GGAAA
1 TTTT-CAAAATGACAA-CTATTTAG-ACAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAA
* * * *
23910843 ATTGCTCGAAGGAATGGATCATCTTGAATTA-TCTAAGGAACAAAAGATAAAAAAGAACTCGTAA
63 ATTGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAA
* * * *
23910907 AAGTTTGTCAGGTTCGAAAGTTCG-GCTGGGAACCAATAGAGAAACTATTATCACCTAAATAAGT
127 AAGTTTGTCAAGTTCGAAAGTTCGATC-GAGAACCAAGAGAG-AACTATTATCACCTAAATAAGT
* *
23910971 TCTTAATT-GAAGACCAAAAGTTG
190 TTTTAATTCAAAGACCAAAAG-TG
* * * * *
23910994 TTTAT-AAAATGACAACTATTTAGACCAATGATGTGATTTCCTGAGCTTGGAATGTTCAGG--GA
1 TTT-TCAAAATGACAACTATTTAGACAAATGATGCGATTTCCCGAGCATGGAATGTTC-GGAAAA
* * * **
23911056 TTGCTCGAAAGAATAGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAAAC-CTGTA
64 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAG--AACTC-GTA
* ** * * * *
23911120 AAAGTTTGTCAACTTCG-AAGTTCGGCCGTGAACAAAGAGAGAAACTATTCTCACCAAAATAAGT
126 AAAGTTTGTCAAGTTCGAAAGTTCGATCGAGAACCAAGAGAG-AACTATTATCACCTAAATAAGT
23911184 TTTTAATTCAAAGACCAAAAGCTG
190 TTTTAATTCAAAGACCAAAAG-TG
* * * * * ** *
23911208 TTTACAAAATAACAACTATTTGGACAAATGATGCGATTTCTCGAACATGGAATCCTCGAAAAATT
1 TTTTCAAAATGACAACTATTTAGACAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATT
* **
23911273 GCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGT
66 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGT
* * * *
23911338 TTGTCAAGTTTGAAAGCTCGATCG-GAACCAAGAGAGATACAATTCTCACCTAAATAAGTTTTTA
131 TTGTCAAGTTCGAAAGTTCGATCGAGAACCAAGAGAGA-ACTATTATCACCTAAATAAGTTTTTA
23911402 ATTCAAAGACCAAAAGTAG
195 ATTCAAAGACCAAAAGT-G
* * * * *
23911421 TTTTCAAAATGTC-ACTATTTAGATCTAATGATGCGA-TTCCCAAGCATGGACTGTACGGAAAAT
1 TTTTCAAAATGACAACTATTTAGA-CAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAAT
* * * *
23911484 GGCTCG-AGGAATGGATCCTCTTGAATACTTTTAGTAACAAAAGTTATAAAAGAACTCGTAAAAA
65 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGT-AAAA
* * * ** * * * *
23911548 GTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAAAAAATGTCACATAAAAATAACTTT
129 GTTTGTCAAGTTCGAAAGTTCGATCGAGAACCAAGAGAGAACTATTATCACCT--AAATAAGTTT
*
23911613 TTAATTTAAAGACCAAAAGTTG
192 TTAATTCAAAGACCAAAAG-TG
* * ** *
23911635 TTTACAAAATGACAATCTATTTAGAACAATTGATATGATTT-CCGAGCATGGAATGTTCAGAAAA
1 TTTTCAAAATGACAA-CTATTTAG-ACAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAA
* * ** *
23911699 -TGCGCGAAGG-ACGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA-AAAA-AATTTCGTAAA
64 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAA-CTCGTAAA
* * ** *
23911760 TGTTTGTCATGTTCG-AAGTTCGGCCGAGAGACCAAGAGAGGAACTATTATCATC-AAATAAGTT
128 AGTTTGTCAAGTTCGAAAGTTCGATCGAGA-ACCAAGAGA-GAACTATTATCACCTAAATAAGTT
*
23911823 TTTAATTCAAAGACC-AAGGTG
191 TTTAATTCAAAGACCAAAAGTG
* * * *
23911844 TTTAT-AAAATGACAACTA-TTAGACCAAATGATGCGATTTCTCGAGGATGGATTGTTCCGAAAA
1 TTT-TCAAAATGACAACTATTTAGA-CAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAA
* * *
23911907 TGGC-CTAGAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCATAAA
64 TTGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAA
*
23911971 AGTTTGTCAAGTTCGGAAGTTCGATCGAGAACC
128 AGTTTGTCAAGTTCGAAAGTTCGATCGAGAACC
23912004 TACAGAAANN
Statistics
Matches: 834, Mismatches: 136, Indels: 83
0.79 0.13 0.08
Matches are distributed among these distances:
206 1 0.00
207 16 0.02
208 24 0.03
209 20 0.02
210 36 0.04
211 97 0.12
212 169 0.20
213 193 0.23
214 149 0.18
215 88 0.11
216 38 0.05
217 3 0.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.28
Consensus pattern (212 bp):
TTTTCAAAATGACAACTATTTAGACAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATT
GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGT
TTGTCAAGTTCGAAAGTTCGATCGAGAACCAAGAGAGAACTATTATCACCTAAATAAGTTTTTAA
TTCAAAGACCAAAAGTG
Found at i:23911737 original size:426 final size:423
Alignment explanation
Indices: 23910781--23912003 Score: 1368
Period size: 426 Copynumber: 2.9 Consensus size: 423
23910771 TAACTTTTTT
* * * *
23910781 TTTACAAAATGACAATCTA-TTAGAACAATTGTTGCGATTTCTCGAGTAAGGAATGTTGGAAAAT
1 TTTACAAAATGACAATCTATTTAGAACAATTGATGCGATTTCTCGAGCATGGAATGTTCGAAAAT
* * ** *
23910845 TGCTCGAAGGAATGGATCATCTTGAATTA-TCTAAGGAACAAAAGATAAAAAAGAACTCGTAAAA
66 TGCTCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAACCGAAG-TTAAAAAGAACTCGTAAAA
* * * * *
23910909 GTTTGTCAGGTTCGAAAGTTCGGCTGGGAACCAATAGAGAAACTATTATCACCTAAATAAGTTCT
129 GTTTGTCAAGTTCGAAAGTTC-GATCGGAACCAAGAGAG-AACTATTATCACCTAAATAAGTTTT
* * * *
23910974 TAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAATGATGTGATTTCCTGA
192 TAATTCAAAGACCAAAAG-TGTTTATAAAATGACAACTATTTAGACAAATGATGCGATTTCCCGA
* * * * * **
23911038 GCTTGGAATGTTCAGG--GATTGCTCGAAAGAATAGATCATCTTGAATACTTTAAGGAACCGAAG
256 GCATGGAATGTTC-GGAAAATGGCTCG-AGGAATGGATCATCTTGAATACTTTAAGGAACAAAAG
* ** * * * *
23911101 TTATAAAAGAAAAC-CTGTAAAAGTTTGTCAACTTCGAAGTTCGGCCGTGAACAAAGAGAGAAAC
319 TTATAAAAG--AACTC-GTAAAAGTTTGTCAAGTTCGAAGTTCGATCGAGAACCAAGAAAGAAAA
* * * *
23911165 TATTCTCACCAAAATAAGTTTTTAATTCAAAGACCAAAAGCTG
381 AATTCACACAAAAATAACTTTTTAATTCAAAGACCAAAAGCTG
* * * * **
23911208 TTTACAAAATAACAA-CTATTT-GGACAAATGATGCGATTTCTCGAACATGGAATCCTCGAAAAA
1 TTTACAAAATGACAATCTATTTAGAACAATTGATGCGATTTCTCGAGCATGGAATGTTCG-AAAA
*
23911271 TTGCTCGAGGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
65 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA-AAAAGAACTCGTAAAA
* * * *
23911336 GTTTGTCAAGTTTGAAAGCTCGATCGGAACCAAGAGAGATACAATTCTCACCTAAATAAGTTTTT
129 GTTTGTCAAGTTCGAAAGTTCGATCGGAACCAAGAGAGA-ACTATTATCACCTAAATAAGTTTTT
* * *
23911401 AATTCAAAGACCAAAAGTAGTTT-TCAAAATGTC-ACTATTTAGATCTAATGATGCGA-TTCCCA
193 AATTCAAAGACCAAAAGT-GTTTAT-AAAATGACAACTATTTAGA-CAAATGATGCGATTTCCCG
* * * * *
23911463 AGCATGGACTGTACGGAAAATGGCTCGAGGAATGGATCCTCTTGAATACTTTTAGTAACAAAAGT
255 AGCATGGAATGTTCGGAAAATGGCTCGAGGAATGGATCATCTTGAATACTTTAAGGAACAAAAGT
* *
23911528 TATAAAAGAACTCGTAAAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAAAAAA
320 TATAAAAGAACTCGT-AAAAGTTTGTCAAGTTCG-AAGTTCGATCGAGAACCAAGAAAGAAAAAA
* * *
23911593 TGTCACATAAAAATAACTTTTTAATTTAAAGACCAAAAGTTG
383 T-TCACACAAAAATAACTTTTTAATTCAAAGACCAAAAGCTG
**
23911635 TTTACAAAATGACAATCTATTTAGAACAATTGATATGATTTC-CGAGCATGGAATGTTCAGAAAA
1 TTTACAAAATGACAATCTATTTAGAACAATTGATGCGATTTCTCGAGCATGGAATGTTC-GAAAA
* * * *
23911699 -TGCGCGAAGG-ACGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAA-AATTTCGTAAAT
65 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAGAA-CTCGTAAAA
* ** *
23911761 GTTTGTCATGTTCG-AAGTTCGGCCGAGAGACCAAGAGAGGAACTATTATCATC-AAATAAGTTT
129 GTTTGTCAAGTTCGAAAGTTCGATCG-GA-ACCAAGAGA-GAACTATTATCACCTAAATAAGTTT
* *
23911824 TTAATTCAAAGACC-AAGGTGTTTATAAAATGACAACTA-TTAGACCAAATGATGCGATTTCTCG
191 TTAATTCAAAGACCAAAAGTGTTTATAAAATGACAACTATTTAGA-CAAATGATGCGATTTCCCG
* * * * *
23911887 AGGATGGATTGTTCCGAAAATGGCCTAGAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAG
255 AGCATGGAATGTTCGGAAAATGG-CTCGAGGAATGGATCATCTTGAATACTTTAAGGAACAAAAG
*
23911952 TTATAAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACC
319 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-GAAGTTCGATCGAGAACC
23912004 TACAGAAANN
Statistics
Matches: 672, Mismatches: 97, Indels: 57
0.81 0.12 0.07
Matches are distributed among these distances:
423 27 0.04
424 79 0.12
425 122 0.18
426 217 0.32
427 188 0.28
428 23 0.03
429 16 0.02
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (423 bp):
TTTACAAAATGACAATCTATTTAGAACAATTGATGCGATTTCTCGAGCATGGAATGTTCGAAAAT
TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAGAACTCGTAAAAGT
TTGTCAAGTTCGAAAGTTCGATCGGAACCAAGAGAGAACTATTATCACCTAAATAAGTTTTTAAT
TCAAAGACCAAAAGTGTTTATAAAATGACAACTATTTAGACAAATGATGCGATTTCCCGAGCATG
GAATGTTCGGAAAATGGCTCGAGGAATGGATCATCTTGAATACTTTAAGGAACAAAAGTTATAAA
AGAACTCGTAAAAGTTTGTCAAGTTCGAAGTTCGATCGAGAACCAAGAAAGAAAAAATTCACACA
AAAATAACTTTTTAATTCAAAGACCAAAAGCTG
Found at i:23913220 original size:215 final size:214
Alignment explanation
Indices: 23912114--23920877 Score: 8978
Period size: 215 Copynumber: 41.3 Consensus size: 214
23912104 NNNNNNNNAA
*
23912114 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGCG-GAACCAATAGAGAAACTATT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGC--CGAGAACCAAGAGAGAAACTATT
* * *
23912178 ATCACCTAAATAAGTTCTTAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGA-C
64 ATCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC
* * * * *
23912241 AAATGATGTGATTTCT-GAG--TGGGATGTTCAGG-GAATTGCTCGAAAGAATGGATCATCTTGA
129 AAATGATGCGATTTCTCGAGCATGGAATGTTC-GGAAAATTGCTCG-AGGAATGGATCGTCTTGA
23912302 ATACTTTAAGGAACCGAAGTTAT
192 ATACTTTAAGGAACCGAAGTTAT
* * * *
23912325 AAAAGAACT-GTAAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAACTATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * *
23912389 CACC-AAATAAGGTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATAACAACTATTTAGACCAA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* ** *
23912453 ATGATGCGATTTCTCGAACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGATCGTCTTGAATA
131 ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGA-GGAATGGATCGTCTTGAATA
23912518 CTTTAAGGAACCGAAGTTATT
195 CTTTAAGGAACCGAAGTTA-T
* * * * * *
23912539 AAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTCGGTCGAGAACCAAGAGAGATACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * *
23912604 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * * *
23912669 ATGATGCGATTTCCCAAGCATGGACTGTACGGAAAATGGCTCGAGGAATGGATCCTCTTGAATAC
131 ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAGGAATGGATCGTCTTGAATAC
* * **
23912734 TTTTAGTAACAAAAGTTAT
196 TTTAAGGAACCGAAGTTAT
* * ** * **
23912753 AAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAAAGAACAAGA-AGAAAAAAA
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAG--A-ACCAAGAGAG-AAACTA
* * *
23912817 TTGTCACATAAATAACTTTTTTTTTAATT-AAAGACCAAAAGTTGTTTACAAAATGACAATCTAT
62 TTATCACCTAAATAA----GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTAT
* * ** * * * *
23912881 TTAGAACAATTGATATGATTTCCCGAGCATGGAATGTTCAGAAAATTGCGCGAAGGAACGGATCG
122 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCG-AGGAATGGATCG
23912946 TCTTGAATACTTTAAGGAACCGAAGTTA-
186 TCTTGAATACTTTAAGGAACCGAAGTTAT
* * * * *
23912974 AAAA-AATTTCGTAAATGTTTGTCATGTTCGGAAGTTCGGCCGAGAACCAAGAGAGGAACTATTA
1 AAAAGAA-CTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTA
*
23913038 TCATCC-AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACC
65 TCA-CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC
* * * * *
23913102 AAATGATGCGATTTCTCGAGGATGGATTGTTCCGAAAATGGCTTAGAGGAATGGATCGTCTTGAA
129 AAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGC-TCGAGGAATGGATCGTCTTGAA
**
23913167 TACTTTAAGGAACAAAAGTTAT
193 TACTTTAAGGAACCGAAGTTAT
* * ** *
23913189 AAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCTACAGAGA-AAACAATT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACC-A-AGAGAGAAACTATT
* * * * *
23913253 CTCTCATAAATAACTTTTTAATTCGAAA-ACCAAAAGTT-TTTTCAAAATGACAATCTATTTAGA
64 ATCACCTAAATAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGA
* * * * * * * * * *
23913316 ACAATTGATGCGATTTCCCGAGAATGTAATGTTTGAAAAATGGCTCGAGGGTATAGATCGTCTTG
127 CCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGA-GGAATGGATCGTCTTG
* *
23913381 AATAATTTAAGGAACCGAAGTTAA
191 AATACTTTAAGGAACCGAAGTTAT
* * * ** **
23913405 AAAAGAACTCGTAAAGGTTTTTCAAGTTCGGAAGTTCGGCCGAGAACCTGGAGAGAATTTATTAT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* *
23913470 CACCTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG------ATTTAGACTAA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* *
23913529 ATGATGCGATTTCTCAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
131 ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAATA
* *
23913594 GTTTAAGGAATCGAAGTTAT
195 CTTTAAGGAACCGAAGTTAT
* * * ** * * * *
23913614 AAAAGAACTCGTAAAA-TTTTTCAAGTGCGGAAGTTCACCCGGGAACCAAAAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * * *
23913678 CACCTAAATAAGTTTTTAATTCAAATACCAAAAGTAGTTTACAAAAAGACAACTATTCAGACCTA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * * *
23913743 ATGATGTGATTTCCCAAGCATGGACTGTAT-GGAAAGTTGCTCGAAGGAATGGACCGTCTTGAAT
131 ATGATGCGATTTCTCGAGCATGGAATGT-TCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAAT
* ***
23913807 ACTTTAATGAAGAAAAGTTAT
194 ACTTTAAGGAACCGAAGTTAT
* * * * * * * * *
23913828 AAAAGAACTCATTAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAAAGAAACAATTC
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCA-AGAGAGAAACTATTA
* * * * *
23913892 TAACATAAATAACTTTTT--TT----TA-CAAAA--TG---AC--AAT-----CTATTTAGAACA
65 TCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA
* * * * *
23913938 ATTGTTGCGATTTCTCGAGTACGGAATGTT-GGAAAAATTGCTCGAAGGAATGGATCATCTTGAA
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGG-AAAATTGCTCG-AGGAATGGATCGTCTTGAA
* ** * *
23914002 TTA-TCTAAGGAACAAAAGATAAA
193 -TACTTTAAGGAACCGAAG-TTAT
* * *
23914025 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCAATAGAGAAACTATTAT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * *
23914090 CACCTAAATAAGTTCTTAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * *
23914154 ATGATGTGATTTC-CTGAGCTTGGAATGTTCAGG-GAATTGCTCGAAAGAATGGATCATCTTGAA
131 ATGATGCGATTTCTC-GAGCATGGAATGTTC-GGAAAATTGCTCG-AGGAATGGATCGTCTTGAA
23914217 TACTTTAAGGAACCGAAGTTAT
193 TACTTTAAGGAACCGAAGTTAT
* * * *
23914239 AAAAGAAC-CTGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAACTATTC
1 AAAAGAACTC-GTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTA
* * *
23914303 TCACCAAAATAAGGTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATGACAACTATTTAGACCA
65 TCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA
* ** *
23914368 AATGATGCGATTTCTCGAACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGATCGTCTTGAAT
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGA-GGAATGGATCGTCTTGAAT
23914433 ACTTTAAGGAACCGAAGTTAT
194 ACTTTAAGGAACCGAAGTTAT
* * * * * *
23914454 AAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTCGGTCGAGAACCAAGAGAGATACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * *
23914519 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * * *
23914584 ATGATGCGATTTCCCAAGCATGGACTGTACGGAAAATGGCTCGAGGAATGGATCCTCTTGAATAC
131 ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAGGAATGGATCGTCTTGAATAC
* * **
23914649 TTTTAGTAACAAAAGTTAT
196 TTTAAGGAACCGAAGTTAT
* * ** * ** *
23914668 AAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAAAAAATTGT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * *
23914733 CACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCA
* ** * * * *
23914798 ATTGATATGATTTCCCGAGCATGGAATGTTCAGAAAATTGCGCGAAGGAACGGATCGTCTTGAAT
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAAT
23914863 ACTTTAAGGAACCGAAGTTA-
194 ACTTTAAGGAACCGAAGTTAT
* * * * *
23914883 AAAA-AATTTCGTAAATGTTTGTCATGTTCGGAAGTTCGGCCGAGAACCAAGAGAGGAACTATTA
1 AAAAGAA-CTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTA
*
23914947 TCATCC-AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACC
65 TCA-CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC
* * * * *
23915011 AAATGATGCGATTTCTCGAGGATGGATTGTTCCGAAAATGGCTTAGAGGAATGGATCGTCTTGAA
129 AAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGC-TCGAGGAATGGATCGTCTTGAA
**
23915076 TACTTTAAGGAACAAAAGTTAT
193 TACTTTAAGGAACCGAAGTTAT
* * ** * * * *
23915098 AAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCTACAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * * *
23915163 CTCATAAATAACTTTTTAATTCGAAA-ACCAAAAGTT-TTTTCAAAATGACAATCTATTTAGAAC
66 CACCTAAATAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACC
* * * * * * * * *
23915226 AATTGATGCGATTTCCCGAGAATGTAATGTTTGAAAAATGGCTCGAGGGTATAGATCGTCTTGAA
129 AAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGA-GGAATGGATCGTCTTGAA
* *
23915291 TAATTTAAGGAACCGAAGTTAA
193 TACTTTAAGGAACCGAAGTTAT
* * * ** **
23915313 AAAAGAACTCGTAAAGGTTTTTCAAGTTCGGAAGTTCGGCCGAGAACCTGGAGAGAATTTATTAT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* *
23915378 CACCTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG------ATTTAGACTAA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* *
23915437 ATGATGCGATTTCTCAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
131 ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAATA
* *
23915502 GTTTAAGGAATCGAAGTTAT
195 CTTTAAGGAACCGAAGTTAT
* * * ** * * * *
23915522 AAAAGAACTCGTAAAA-TTTTTCAAGTGCGGAAGTTCACCCGGGAACCAAAAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * * *
23915586 CACCTAAATAAGTTTTTAATTCAAATACCAAAAGTAGTTTACAAAAAGACAACTATTCAGACCTA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * * *
23915651 ATGATGTGATTTCCCAAGCATGGACTGTAT-GGAAAGTTGCTCGAAGGAATGGACCGTCTTGAAT
131 ATGATGCGATTTCTCGAGCATGGAATGT-TCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAAT
* ***
23915715 ACTTTAATGAAGAAAAGTTAT
194 ACTTTAAGGAACCGAAGTTAT
* * * * * * * * *
23915736 AAAAGAACTCATTAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAAAGAAACAATTC
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCA-AGAGAGAAACTATTA
* * * * *
23915800 TAACATAAATAACTTTTT--TT----TA-CAAAA--TG---AC--AAT-----CTATTTAGAACA
65 TCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA
* * * * *
23915846 ATTGTTGCGATTTCTCGAGTACGGAATGTT-GGAAAAATTGCTCGAAGGAATGGATCATCTTGAA
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGG-AAAATTGCTCG-AGGAATGGATCGTCTTGAA
* ** * *
23915910 TTA-TCTAAGGAACAAAAGATAA
193 -TACTTTAAGGAACCGAAGTTAT
* * *
23915932 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCAATAGAGAAACTATTAT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * *
23915997 CACCTAAATAAGTTCTTAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * *
23916061 ATGATGTGATTTC-CTGAGCTTGGAATGTTCAGG-GAATTGCTCGAAAGAATGGATCATCTTGAA
131 ATGATGCGATTTCTC-GAGCATGGAATGTTC-GGAAAATTGCTCG-AGGAATGGATCGTCTTGAA
23916124 TACTTTAAGGAACCGAAGTTAT
193 TACTTTAAGGAACCGAAGTTAT
* * * *
23916146 AAAAGAAC-CTGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAACTATTC
1 AAAAGAACTC-GTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTA
* * *
23916210 TCACCAAAATAAGTTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATAACAACTATTTAGACCA
65 TCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA
* ** *
23916275 AATGATGCGATTTCTCGAACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGATCGTCTTGAAT
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGA-GGAATGGATCGTCTTGAAT
23916340 ACTTTAAGGAACCGAAGTTAT
194 ACTTTAAGGAACCGAAGTTAT
* * * * * *
23916361 AAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTCGGTCGAGAACCAAGAGAGATACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * *
23916426 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * * *
23916491 ATGATGCGATTTCCCAAGCATGGACTGTACGGAAAATGGCTCGAGGAATGGATCCTCTTGAATAC
131 ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAGGAATGGATCGTCTTGAATAC
* * **
23916556 TTTTAGTAACAAAAGTTAT
196 TTTAAGGAACCGAAGTTAT
* * ** * ** *
23916575 AAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAAAAAATTGT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * *
23916640 CACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCA
* ** * * * *
23916705 ATTGATATGATTTCCCGAGCATGGAATGTTCAGAAAATTGCGCGAAGGAACGGATCGTCTTGAAT
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAAT
23916770 ACTTTAAGGAACCGAAGTTA-
194 ACTTTAAGGAACCGAAGTTAT
* * * * *
23916790 AAAA-AATTTCGTAAATGTTTGTCATGTTCGGAAGTTCGGCCGAGAACCAAGAGAGGAACTATTA
1 AAAAGAA-CTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTA
*
23916854 TCATCC-AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACC
65 TCA-CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC
* * * * *
23916918 AAATGATGCGATTTCTCGAGGATGGATTGTTCCGAAAATGGCTTAGAGGAATGGATCGTCTTGAA
129 AAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGC-TCGAGGAATGGATCGTCTTGAA
**
23916983 TACTTTAAGGAACAAAAGTTAT
193 TACTTTAAGGAACCGAAGTTAT
* * ** * * * *
23917005 AAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCTACAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * * *
23917070 CTCATAAATAACTTTTTAATTCGAAA-ACCAAAAGTT-TTTTCAAAATGACAATCTATTTAGAAC
66 CACCTAAATAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACC
* * * * * * * * *
23917133 AATTGATGCGATTTCCCGAGAATGTAATGTTTGAAAAATGGCTCGAGGGTATAGATCGTCTTGAA
129 AAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGA-GGAATGGATCGTCTTGAA
* *
23917198 TAATTTAAGGAACCGAAGTTAA
193 TACTTTAAGGAACCGAAGTTAT
* * * ** **
23917220 AAAAGAACTCGTAAAGGTTTTTCAAGTTCGGAAGTTCGGCCGAGAACCTGGAGAGAATTTATTAT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* *
23917285 CACCTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG------ATTTAGACTAA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* *
23917344 ATGATGCGATTTCTCAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
131 ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAATA
* *
23917409 GTTTAAGGAATCGAAGTTAT
195 CTTTAAGGAACCGAAGTTAT
* * * ** * * * *
23917429 AAAAGAACTCGTAAAA-TTTTTCAAGTGCGGAAGTTCACCCGGGAACCAAAAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * * *
23917493 CACCTAAATAAGTTTTTAATTCAAATACCAAAAGTAGTTTACAAAAAGACAACTATTCAGACCTA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * * *
23917558 ATGATGTGATTTCCCAAGCATGGACTGTAT-GGAAAGTTGCTCGAAGGAATGGACCGTCTTGAAT
131 ATGATGCGATTTCTCGAGCATGGAATGT-TCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAAT
* ***
23917622 ACTTTAATGAAGAAAAGTTAT
194 ACTTTAAGGAACCGAAGTTAT
* * * * * * * * *
23917643 AAAAGAACTCATTAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAAAGAAACAATTC
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCA-AGAGAGAAACTATTA
* * * * *
23917707 TAACATAAATAACTTTTT--TT----TA-CAAAA--TG---AC--AAT-----CTATTTAGAACA
65 TCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA
* * * * *
23917753 ATTGTTGCGATTTCTCGAGTACGGAATGTT-GGAAAAATTGCTCGAAGGAATGGATCATCTTGAA
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGG-AAAATTGCTCG-AGGAATGGATCGTCTTGAA
* ** * *
23917817 TTA-TCTAAGGAACAAAAGATAA
193 -TACTTTAAGGAACCGAAGTTAT
* * *
23917839 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCAATAGAGAAACTATTAT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * *
23917904 CACCTAAATAAGTTCTTAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * *
23917968 ATGATGTGATTTC-CTGAGCTTGGAATGTTCAGG-GAATTGCTCGAAAGAATGGATCATCTTGAA
131 ATGATGCGATTTCTC-GAGCATGGAATGTTC-GGAAAATTGCTCG-AGGAATGGATCGTCTTGAA
23918031 TACTTTAAGGAACCGAAGTTAT
193 TACTTTAAGGAACCGAAGTTAT
* * * *
23918053 AAAAGAAC-CTGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAACTATTC
1 AAAAGAACTC-GTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTA
* * * * *
23918117 TCACCAAAATAAGGTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATAACAACTATTTGGACCA
65 TCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA
* ** *
23918182 AATGATGCGATTTCTCGAACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGATCGTCTTGAAT
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGA-GGAATGGATCGTCTTGAAT
23918247 ACTTTAAGGAACCGAAGTTAT
194 ACTTTAAGGAACCGAAGTTAT
* * * * * *
23918268 AAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTCGGTCGAGAACCAAGAGAGATACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * *
23918333 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * * *
23918398 ATGATGCGATTTCCCAAGCATGGACTGTACGGAAAATGGCTCGAGGAATGGATCCTCTTGAATAC
131 ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAGGAATGGATCGTCTTGAATAC
* * **
23918463 TTTTAGTAACAAAAGTTAT
196 TTTAAGGAACCGAAGTTAT
* * ** * ** *
23918482 AAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAAAAAATTGT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * *
23918547 CACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCA
* ** * * * *
23918612 ATTGATATGATTTCCCGAGCATGGAATGTTCAGAAAATTGCGCGAAGGAACGGATCGTCTTGAAT
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAAT
23918677 ACTTTAAGGAACCGAAGTTA-
194 ACTTTAAGGAACCGAAGTTAT
* * * * *
23918697 AAAA-AATTTCGTAAATGTTTGTCATGTTCGGAAGTTCGGCCGAGAACCAAGAGAGGAACTATTA
1 AAAAGAA-CTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTA
*
23918761 TCATCC-AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACC
65 TCA-CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC
* * * * *
23918825 AAATGATGCGATTTCTCGAGGATGGATTGTTCCGAAAATGGCTTAGAGGAATGGATCGTCTTGAA
129 AAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGC-TCGAGGAATGGATCGTCTTGAA
**
23918890 TACTTTAAGGAACAAAAGTTAT
193 TACTTTAAGGAACCGAAGTTAT
* * ** * * * *
23918912 AAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCTACAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * * *
23918977 CTCATAAATAACTTTTTAATTCGAAA-ACCAAAAGTT-TTTTCAAAATGACAATCTATTTAGAAC
66 CACCTAAATAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACC
* * * * * * * * *
23919040 AATTGATGCGATTTCCCGAGAATGTAATGTTTGAAAAATGGCTCGAGGGTATAGATCGTCTTGAA
129 AAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGA-GGAATGGATCGTCTTGAA
* *
23919105 TAATTTAAGGAACCGAAGTTAA
193 TACTTTAAGGAACCGAAGTTAT
* * * ** **
23919127 AAAAGAACTCGTAAAGGTTTTTCAAGTTCGGAAGTTCGGCCGAGAACCTGGAGAGAATTTATTAT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* *
23919192 CACCTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG------ATTTAGACTAA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* *
23919251 ATGATGCGATTTCTCAAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
131 ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAATA
* *
23919316 GTTTAAGGAATCGAAGTTAT
195 CTTTAAGGAACCGAAGTTAT
* * * ** * * * *
23919336 AAAAGAACTCGTAAAA-TTTTTCAAGTGCGGAAGTTCACCCGGGAACCAAAAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * * *
23919400 CACCTAAATAAGTTTTTAATTCAAATACCAAAAGTAGTTTACAAAAAGACAACTATTCAGACCTA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * * *
23919465 ATGATGTGATTTCCCAAGCATGGACTGTAT-GGAAAGTTGCTCGAAGGAATGGACCGTCTTGAAT
131 ATGATGCGATTTCTCGAGCATGGAATGT-TCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAAT
* ***
23919529 ACTTTAATGAAGAAAAGTTAT
194 ACTTTAAGGAACCGAAGTTAT
* * * * * * * * *
23919550 AAAAGAACTCATTAAAGTTTTTCAAATTCGAAAGTTCGACCAAGAA-CAGAGAAAGAAACAATTC
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCA-AGAGAGAAACTATTA
* * * * *
23919614 TAACATAAATAACTTTTT--TT----TA-CAAAA--TG---AC--AAT-----CTATTTAGAACA
65 TCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA
* * * * *
23919660 ATTGTTGCGATTTCTCGAGTACGGAATGTT-GGAAAAATTGCTCGAAGGAATGGATCATCTTGAA
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGG-AAAATTGCTCG-AGGAATGGATCGTCTTGAA
* ** * *
23919724 TTA-TCTAAGGAACAAAAGATAA
193 -TACTTTAAGGAACCGAAGTTAT
* * *
23919746 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCTGGGAACCAATAGAGAAACTATTAT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * *
23919811 CACCTAAATAAGTTCTTAATT-GAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACCAA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * *
23919875 ATGATGTGATTTC-CTGAGCTTGGAATGTTCAGG-GAATTGCTCGAAAGAATGGATCATCTTGAA
131 ATGATGCGATTTCTC-GAGCATGGAATGTTC-GGAAAATTGCTCG-AGGAATGGATCGTCTTGAA
23919938 TACTTTAAGGAACCGAAGTTAT
193 TACTTTAAGGAACCGAAGTTAT
* * * *
23919960 AAAAGAAC-CTGTAAAAGTTTGTCAACTTCGAAAGTTCGGCCGTGAACAAAGAGAGAAACTATTC
1 AAAAGAACTC-GTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTA
* * * * *
23920024 TCACCAAAATAAGGTTTTAATTCAAAGACCAAAAGCTGTTTACAAAATAACAACTATTTGGACCA
65 TCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCA
* ** *
23920089 AATGATGCGATTTCTCGAACATGGAATCCTCGAAAAATTGCTCGAGGGAATGGATCGTCTTGAAT
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGA-GGAATGGATCGTCTTGAAT
23920154 ACTTTAAGGAACCGAAGTTAT
194 ACTTTAAGGAACCGAAGTTAT
* * * * * *
23920175 AAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGCTCGGTCGAGAACCAAGAGAGATACAATTCT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * *
23920240 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGTCAACTATTTAGATCTA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
* * * * * *
23920305 ATGATGCGATTTCCCAAGCATGGACTGTACGGAAAATGGCTCGAGGAATGGATCCTCTTGAATAC
131 ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAGGAATGGATCGTCTTGAATAC
* * **
23920370 TTTTAGTAACAAAAGTTAT
196 TTTAAGGAACCGAAGTTAT
* * ** * ** *
23920389 AAAAGAACTCGTAAAAGTTTGTCAAGTTTGAAAGTTTGATCGAGAACCAAGAAAGAAAAAATTGT
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
* * * *
23920454 CACATAAATAACTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAACA
66 CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGACCA
* ** * * * *
23920519 ATTGATATGATTTCCCGAGCATGGAATGTTCAGAAAATTGCGCGAAGGAACGGATCGTCTTGAAT
130 AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCG-AGGAATGGATCGTCTTGAAT
23920584 ACTTTAAGGAACCGAAGTTA-
194 ACTTTAAGGAACCGAAGTTAT
* * * * *
23920604 AAAA-AATTTCGTAAATGTTTGTCATGTTCGGAAGTTCGGCCGAGAACCAAGAGAGGAACTATTA
1 AAAAGAA-CTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTA
*
23920668 TCATCC-AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAACTATTTAGACC
65 TCA-CCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACC
* * * * *
23920732 AAATGATGCGATTTCTCGAGGATGGATTGTTCCGAAAATGGCTTAGAGGAATGGATCGTCTTGAA
129 AAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGC-TCGAGGAATGGATCGTCTTGAA
**
23920797 TACTTTAAGGAACAAAAGTTAT
193 TACTTTAAGGAACCGAAGTTAT
* * ** * *
23920819 AAAAGAACTCATAAAAGTTTGTCAAGTTCGGAAGTTCGATCGAGAACCTACAGAGAAAC
1 AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAAC
23920878 AATTCTCTCA
Statistics
Matches: 7112, Mismatches: 1193, Indels: 492
0.81 0.14 0.06
Matches are distributed among these distances:
195 12 0.00
196 475 0.07
197 79 0.01
198 8 0.00
199 2 0.00
201 11 0.00
202 16 0.00
203 13 0.00
204 6 0.00
205 2 0.00
206 4 0.00
207 3 0.00
208 361 0.05
209 455 0.06
210 52 0.01
211 11 0.00
212 2 0.00
213 74 0.01
214 2028 0.29
215 2830 0.40
216 460 0.06
217 33 0.00
218 20 0.00
219 4 0.00
220 30 0.00
221 87 0.01
222 34 0.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (214 bp):
AAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACTATTAT
CACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAA
ATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAGGAATGGATCGTCTTGAATAC
TTTAAGGAACCGAAGTTAT
Found at i:23929230 original size:2 final size:2
Alignment explanation
Indices: 23929223--23929247 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23929213 TTCAAGGAGA
23929223 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
23929248 AGGAGAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23930351 original size:21 final size:21
Alignment explanation
Indices: 23930327--23930371 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
23930317 TAGACTTATG
23930327 ACATATTTTAACATTTATACT
1 ACATATTTTAACATTTATACT
23930348 ACATATTTTAACATTTATACT
1 ACATATTTTAACATTTATACT
23930369 ACA
1 ACA
23930372 AAATATTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (21 bp):
ACATATTTTAACATTTATACT
Found at i:23930394 original size:15 final size:15
Alignment explanation
Indices: 23930374--23930427 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
23930364 ATACTACAAA
23930374 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
23930389 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
23930406 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
23930423 ATATT
1 ATATT
23930428 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:23930485 original size:15 final size:16
Alignment explanation
Indices: 23930465--23930495 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23930455 AAGAATGTTA
23930465 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
23930480 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
23930496 AAAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:23930669 original size:18 final size:18
Alignment explanation
Indices: 23930632--23930671 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
23930622 ATTTTATATT
* * *
23930632 AATATTTTTATAATTTAA
1 AATATTTTTAAAAATAAA
23930650 AATATTTTTAAAAATAAA
1 AATATTTTTAAAAATAAA
23930668 AATA
1 AATA
23930672 AAAATTATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AATATTTTTAAAAATAAA
Found at i:23935996 original size:120 final size:111
Alignment explanation
Indices: 23935782--23936007 Score: 283
Period size: 111 Copynumber: 2.0 Consensus size: 111
23935772 TATTGGAGAA
* * *
23935782 GGAAATGCCTAAAAAGAGTTGTAACGTGAAAATATGAAAAAAAATCAAATTGCAAAATTTGAAAA
1 GGAAATACCTAAAAAGAGTTGTAACGTGAAAATATGAAAAAAAAACAAAGTGCAAAATTTGAAAA
* *
23935847 GTATGAGGATTAATATGCAATTTGATCAAAATGTGAAAATGGGGAG
66 GTATGAGGATGAATATACAATTTGATCAAAATGTGAAAATGGGGAG
* *
23935893 GGAAATACCTAAAAAGAGTTGTAAGGTGAAAGTATGACAAAAAAAAAACAAAGTG-AAAATTTTG
1 GGAAATACCTAAAAAGAGTTGTAACGTGAAAATATG---AAAAAAAAACAAAGTGCAAAA-TTTG
*
23935957 AAAAGTATGAGTATGAGGAGTAAAGTACAATTTGATCAAAATGTGAAAATG
62 AAAAGTATGAGGATGA--A-T--A-TACAATTTGATCAAAATGTGAAAATG
23936008 TAAGTTATTA
Statistics
Matches: 97, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
111 33 0.34
113 4 0.04
114 32 0.33
116 1 0.01
117 1 0.01
119 1 0.01
120 25 0.26
ACGTcount: A:0.49, C:0.06, G:0.22, T:0.23
Consensus pattern (111 bp):
GGAAATACCTAAAAAGAGTTGTAACGTGAAAATATGAAAAAAAAACAAAGTGCAAAATTTGAAAA
GTATGAGGATGAATATACAATTTGATCAAAATGTGAAAATGGGGAG
Found at i:23936151 original size:131 final size:130
Alignment explanation
Indices: 23935984--23936223 Score: 372
Period size: 131 Copynumber: 1.8 Consensus size: 130
23935974 GAGTAAAGTA
* * * *
23935984 CAATTTGATCAAAATGTGAAAATGTAAGTTATTATTGATTAATTGAGATAAGAATAAGTTGAAAT
1 CAATTTGACCAAAATGTGAAAATGTAAGATATTATTGATTAACTGACATAAGAATAAGTTGAAAT
* *
23936049 ATGCATTGGTACGATGGAAATCAAATTTGGGACTCAAATGGAAAATTAGAAAGTACATGGACAAT
66 ATGCATTAGTACGATGGAAATCAAATTTGAGACT-AAATGGAAAATTAGAAAGTACATGGACAAT
23936114 G
130 G
* * *
23936115 CAATTTGACCAAAATGTGAAAATGTGAGATATTATTGATTTACTGACATAATAATAAGTTGAAAT
1 CAATTTGACCAAAATGTGAAAATGTAAGATATTATTGATTAACTGACATAAGAATAAGTTGAAAT
* *
23936180 ATGCATTAGTATGATGGAAATCAAATTTGAGACTAAATTGAAAA
66 ATGCATTAGTACGATGGAAATCAAATTTGAGACTAAATGGAAAA
23936224 AAACAAAAAG
Statistics
Matches: 98, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
130 9 0.09
131 89 0.91
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (130 bp):
CAATTTGACCAAAATGTGAAAATGTAAGATATTATTGATTAACTGACATAAGAATAAGTTGAAAT
ATGCATTAGTACGATGGAAATCAAATTTGAGACTAAATGGAAAATTAGAAAGTACATGGACAATG
Found at i:23940567 original size:31 final size:32
Alignment explanation
Indices: 23940509--23940575 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
23940499 CCATAATTAA
23940509 TAAACACTTAAAAAATAATTAAAACCCTAAACC
1 TAAACACTTAAAAAATAA-TAAAACCCTAAACC
* * *
23940542 TAAACACTTACAAATTAA-AAAACCCTAACCC
1 TAAACACTTAAAAAATAATAAAACCCTAAACC
23940573 TAA
1 TAA
23940576 TTTAGAATCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 15 0.48
33 16 0.52
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.21
Consensus pattern (32 bp):
TAAACACTTAAAAAATAATAAAACCCTAAACC
Found at i:23940617 original size:22 final size:20
Alignment explanation
Indices: 23940561--23940621 Score: 59
Period size: 22 Copynumber: 2.9 Consensus size: 20
23940551 ACAAATTAAA
23940561 AAACCCTAACCCTAATTTAG
1 AAACCCTAACCCTAATTTAG
* * *
23940581 AATCCCCACAACCCTAATTTCAT
1 AA-ACCC-TAACCCTAATTT-AG
23940604 AAACCCTAAGCCCTAATT
1 AAACCCTAA-CCCTAATT
23940622 AGCAATTAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
20 2 0.06
21 5 0.16
22 22 0.69
23 3 0.09
ACGTcount: A:0.38, C:0.34, G:0.03, T:0.25
Consensus pattern (20 bp):
AAACCCTAACCCTAATTTAG
Found at i:23944123 original size:31 final size:31
Alignment explanation
Indices: 23944076--23944182 Score: 107
Period size: 31 Copynumber: 3.5 Consensus size: 31
23944066 TTAATATAAC
* *
23944076 ATTTGGTACATGAACTTGATACTTTTTTCTA
1 ATTTGGTACTTAAACTTGATACTTTTTTCTA
* *
23944107 AGTTGGTACTTAAACTT--T--TTTTTGATCCA
1 ATTTGGTACTTAAACTTGATACTTTTT--TCTA
* *
23944136 ATTTGGTACTTGAACTTGATACTTTTTCCTA
1 ATTTGGTACTTAAACTTGATACTTTTTTCTA
23944167 ATTTGGTAC-TAAACTT
1 ATTTGGTACTTAAACTT
23944183 TTTTGGACTC
Statistics
Matches: 61, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
27 5 0.08
29 19 0.31
30 6 0.10
31 26 0.43
33 5 0.08
ACGTcount: A:0.25, C:0.14, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTTGGTACTTAAACTTGATACTTTTTTCTA
Found at i:23944220 original size:58 final size:58
Alignment explanation
Indices: 23944076--23944264 Score: 229
Period size: 60 Copynumber: 3.2 Consensus size: 58
23944066 TTAATATAAC
* * *
23944076 ATTTGGTACATGAACTTGATACTTTTTT-CTAAGTTGGTACTTAAACTTTTTTTTGATCCA
1 ATTTGGTACCTGAACTTGATA-TTTTTTCCTAATTTGGTAC-TAAACTTTTTTTAGAT-CA
* * *
23944136 ATTTGGTACTTGAACTTGATACTTTTTCCTAATTTGGTACTAAAC-TTTTTTGGACTCA
1 ATTTGGTACCTGAACTTGATATTTTTTCCTAATTTGGTACTAAACTTTTTTTAGA-TCA
* * *
23944194 ATTTGGTACCTGAACTTGACATTTTTTCCTAGTTTGGTACCTAAGCTTTTTTTAGATTCA
1 ATTTGGTACCTGAACTTGATATTTTTTCCTAATTTGGTA-CTAAACTTTTTTTAGA-TCA
23944254 ATTTGGTACCT
1 ATTTGGTACCT
23944265 AAATTTATTA
Statistics
Matches: 114, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
58 45 0.39
59 16 0.14
60 53 0.46
ACGTcount: A:0.23, C:0.15, G:0.14, T:0.47
Consensus pattern (58 bp):
ATTTGGTACCTGAACTTGATATTTTTTCCTAATTTGGTACTAAACTTTTTTTAGATCA
Found at i:23944605 original size:61 final size:58
Alignment explanation
Indices: 23944473--23944605 Score: 142
Period size: 59 Copynumber: 2.2 Consensus size: 58
23944463 AAGTTTAAGT
* * * *
23944473 ACCTAAACTTTTTTGATCCAATTTGGTACTTGAACTTGACACTTTTTTTAAATTTGGT
1 ACCTAAACTTTTTTGATCCAATTTGATACCTAAACTTGACACTTTTTTTAAATTTGGC
* * * *
23944531 ACTTAAACTTTTTTGGA-CTCAATTTGATACCTAAACTTGGCATTTTTTTTTCTAATTTGGC
1 ACCTAAACTTTTTT-GATC-CAATTTGATACCTAAACTTGACA-CTTTTTTT-AAATTTGGC
*
23944592 ACCTAAGCTTTTTT
1 ACCTAAACTTTTTT
23944606 TTAGATTCAA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
58 14 0.23
59 21 0.34
60 7 0.11
61 19 0.31
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (58 bp):
ACCTAAACTTTTTTGATCCAATTTGATACCTAAACTTGACACTTTTTTTAAATTTGGC
Found at i:23944864 original size:31 final size:30
Alignment explanation
Indices: 23944828--23944905 Score: 104
Period size: 31 Copynumber: 2.6 Consensus size: 30
23944818 AGACACCAAA
*
23944828 AAGTTTAAGTACCAACTTAAAAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAAAAAAAA-TGTC
*
23944859 AAGTTT-AGATACCAAATTAGAAAAAATGTC
1 AAGTTTAAG-TACCAAATTAAAAAAAATGTC
*
23944889 AAGTTTACGTACCAAAT
1 AAGTTTAAGTACCAAAT
23944906 GTTATATTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
30 20 0.48
31 22 0.52
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (30 bp):
AAGTTTAAGTACCAAATTAAAAAAAATGTC
Found at i:23944876 original size:59 final size:59
Alignment explanation
Indices: 23944766--23944879 Score: 149
Period size: 59 Copynumber: 1.9 Consensus size: 59
23944756 TTAATATTAA
** *
23944766 AAAAAGATTAAGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGAACTAAATTAGACACC
1 AAAAAGATTAAGTACCAAATTAAAAAAAAGAGTCAAGTTCAGGAACCAAATTAGACACC
* * * *
23944825 AAAAAGTTTAAGTACCAACTTAAAAAAAAGTGTCAAGTTTA-GATACCAAATTAGA
1 AAAAAGATTAAGTACCAAATTAAAAAAAAGAGTCAAGTTCAGGA-ACCAAATTAGA
23944880 AAAAATGTCA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
58 2 0.04
59 45 0.96
ACGTcount: A:0.51, C:0.12, G:0.15, T:0.22
Consensus pattern (59 bp):
AAAAAGATTAAGTACCAAATTAAAAAAAAGAGTCAAGTTCAGGAACCAAATTAGACACC
Found at i:23952456 original size:38 final size:37
Alignment explanation
Indices: 23952375--23952459 Score: 109
Period size: 38 Copynumber: 2.2 Consensus size: 37
23952365 ATGAGTCTAT
* *
23952375 TCAGAATTGCGCCCAGAATTGTCACTGCATGATGATG
1 TCAGAATTGCGCCCAAAATTATCACTGCATGATGATG
*
23952412 TCCAGAATTGCGTCCAAAATTATCACTGCATGA-GCATG
1 T-CAGAATTGCGCCCAAAATTATCACTGCATGATG-ATG
23952450 CTCAGAATTG
1 -TCAGAATTG
23952460 TCGCTGCAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
37 2 0.05
38 39 0.93
39 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (37 bp):
TCAGAATTGCGCCCAAAATTATCACTGCATGATGATG
Found at i:23955985 original size:37 final size:37
Alignment explanation
Indices: 23955930--23956007 Score: 129
Period size: 37 Copynumber: 2.1 Consensus size: 37
23955920 TTACTACTAA
* * *
23955930 TGTCGCTGCATGAGCACTTCTAGATTGCGCCCAAAAC
1 TGTCGCCGCATGAACACTTCTAGATTGCACCCAAAAC
23955967 TGTCGCCGCATGAACACTTCTAGATTGCACCCAAAAC
1 TGTCGCCGCATGAACACTTCTAGATTGCACCCAAAAC
23956004 TGTC
1 TGTC
23956008 ACCGAAGGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
TGTCGCCGCATGAACACTTCTAGATTGCACCCAAAAC
Found at i:23956033 original size:37 final size:37
Alignment explanation
Indices: 23955944--23956037 Score: 107
Period size: 37 Copynumber: 2.5 Consensus size: 37
23955934 GCTGCATGAG
* * * * *
23955944 CACTTCTAGATTGCGCCCAAAACTGTCGCCGCATGAA
1 CACTTCTAGAATGCACCCAAAACTGTCACCGAAGGAA
*
23955981 CACTTCTAGATTGCACCCAAAACTGTCACCGAAGGAA
1 CACTTCTAGAATGCACCCAAAACTGTCACCGAAGGAA
* * *
23956018 TATTTCTTGAATGCACCCAA
1 CACTTCTAGAATGCACCCAA
23956038 GATTATCGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (37 bp):
CACTTCTAGAATGCACCCAAAACTGTCACCGAAGGAA
Found at i:23956057 original size:37 final size:37
Alignment explanation
Indices: 23956016--23956126 Score: 118
Period size: 38 Copynumber: 3.0 Consensus size: 37
23956006 TCACCGAAGG
* *
23956016 AATATTTCTTGAA-TGCACCCAAGATTATCGCTGCATA
1 AATA-TTCTTAAATTGCACCCAAGAATATCGCTGCATA
*
23956053 AATATTCTTCAAATTGCATCCAA-AACTATCGCTGCATA
1 AATATTCTT-AAATTGCACCCAAGAA-TATCGCTGCATA
* * * *
23956091 AGTATTCTTCAATTGCACCCAGGAATGTCGCTGCAT
1 AATATTCTTAAATTGCACCCAAGAATATCGCTGCAT
23956127 GAACATGTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
36 5 0.08
37 27 0.44
38 30 0.48
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (37 bp):
AATATTCTTAAATTGCACCCAAGAATATCGCTGCATA
Found at i:23956168 original size:26 final size:26
Alignment explanation
Indices: 23956116--23956168 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23956106 CACCCAGGAA
*
23956116 TGTCGCTGCATGAACATGTACAGAAT
1 TGTCGCTGCATGAACATGTACAAAAT
* *
23956142 TGTCGCTGCATGAACGTGTCCAAAAT
1 TGTCGCTGCATGAACATGTACAAAAT
23956168 T
1 T
23956169 ATGCCTAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
TGTCGCTGCATGAACATGTACAAAAT
Found at i:23956989 original size:16 final size:16
Alignment explanation
Indices: 23956968--23956998 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23956958 TTGTGGATCC
23956968 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
23956984 CATTTTATCTTTATT
1 CATTTTACCTTTATT
23956999 TTCACATCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:23960077 original size:17 final size:17
Alignment explanation
Indices: 23960051--23960084 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23960041 TGTTAGTAAG
*
23960051 CATTGCCATTTCATTTT
1 CATTGCCATTGCATTTT
*
23960068 CATTGTCATTGCATTTT
1 CATTGCCATTGCATTTT
23960085 AGTGTTAGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.21, G:0.09, T:0.53
Consensus pattern (17 bp):
CATTGCCATTGCATTTT
Found at i:23961184 original size:37 final size:37
Alignment explanation
Indices: 23961114--23961203 Score: 128
Period size: 37 Copynumber: 2.4 Consensus size: 37
23961104 TTACTATTAA
* * *
23961114 TGTCACTGCATGAGTCTATTCAGAATTGTGCCCAGAAT
1 TGTCACTGCATGAG-CGATTCAGAATTGCGCCCAAAAT
23961152 TGTCACTGCATGA-CGATGTCAGAATTGCGCCCAAAAT
1 TGTCACTGCATGAGCGAT-TCAGAATTGCGCCCAAAAT
23961189 TGTCACTGCATGAGC
1 TGTCACTGCATGAGC
23961204 ATGCGCAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
36 3 0.06
37 30 0.64
38 14 0.30
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (37 bp):
TGTCACTGCATGAGCGATTCAGAATTGCGCCCAAAAT
Found at i:23963524 original size:21 final size:21
Alignment explanation
Indices: 23963479--23963553 Score: 62
Period size: 21 Copynumber: 3.6 Consensus size: 21
23963469 TAGTTTAGAT
*
23963479 TTCTATCGATACAAGTGATAG
1 TTCTATCGATACAAGTGATAC
*
23963500 TTCTATTGATACAAGTGACT-C
1 TTCTATCGATACAAGTGA-TAC
* * * **
23963521 TTCTACCAAAACAAGTCTTAC
1 TTCTATCGATACAAGTGATAC
*
23963542 TTCTACCGATAC
1 TTCTATCGATAC
23963554 TAAAAACTCT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 1 0.02
21 40 0.95
22 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (21 bp):
TTCTATCGATACAAGTGATAC
Found at i:23980387 original size:47 final size:47
Alignment explanation
Indices: 23980313--23980416 Score: 181
Period size: 47 Copynumber: 2.2 Consensus size: 47
23980303 CAAATTGTGA
*
23980313 ACAATGTCACCAACATCGCAGATAAATTGCCAATAATCAATATCGTGG
1 ACAA-GTCACCAACATCGCAAATAAATTGCCAATAATCAATATCGTGG
*
23980361 ACAAGTCACCAACATCGCAAATAAATTGCTAATAATCAATATCGTGG
1 ACAAGTCACCAACATCGCAAATAAATTGCCAATAATCAATATCGTGG
23980408 ACAAGTCAC
1 ACAAGTCAC
23980417 TAAAATCATA
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
47 50 0.93
48 4 0.07
ACGTcount: A:0.41, C:0.23, G:0.13, T:0.22
Consensus pattern (47 bp):
ACAAGTCACCAACATCGCAAATAAATTGCCAATAATCAATATCGTGG
Found at i:23980637 original size:277 final size:277
Alignment explanation
Indices: 23980143--23980700 Score: 1017
Period size: 277 Copynumber: 2.0 Consensus size: 277
23980133 TACATTATAC
23980143 AATCATATCAGTTTCATATAACTCAATATTTCACACTTATACTATACATGATCATGTCAATGCAC
1 AATCATATCAGTTTCATATAACTCAATATTTCACACTTATACTATACATGATCATGTCAATGCAC
23980208 ATTTCGTAAAACGATGCAGATTTTAGGAAAACGGTCCTACCCATTTTCGCTGCACGCCATGATCG
66 ATTTCGTAAAACGATGCAGATTTTAGGAAAACGGTCCTACCCATTTTCGCTGCACGCCATGATCG
23980273 AGTTCCCTAGAAATCGTCCATCCAACACACCAAATTGTGAACAATGTCACCAACATCGCAGATAA
131 AGTTCCCTAGAAATCGTCCATCCAACACACCAAATTGTGAACAATGTCACCAACATCGCAGATAA
* *
23980338 ATTGCCAATAATCAATATCGTGGACAAGTCACCAACATCGCAAATAAATTGCTAATAATCAATAT
196 ATTGCCAATAATCAATATCGTGGACAAGTCACCAACATCGCAAATAAATTGCCAATAAACAATAT
*
23980403 CGTGGACAAGTCACTAA
261 CGTGGACAAGTCACCAA
*
23980420 AATCATATCAGTTTCATATAACTCAATATTTCACACTTATACTATGCATGATCATGTCAATGCAC
1 AATCATATCAGTTTCATATAACTCAATATTTCACACTTATACTATACATGATCATGTCAATGCAC
23980485 ATTTCGTAAAACGATGCAGATTTTAGGAAAACGGTCCTACCCATTTTCGCTGCACGCCATGATCG
66 ATTTCGTAAAACGATGCAGATTTTAGGAAAACGGTCCTACCCATTTTCGCTGCACGCCATGATCG
* * ** * *
23980550 AGTTCCCTAGAGATCGTCTATCCAACACAGTAAATTGTGAACAATGTCACCAATATCGTAGATAA
131 AGTTCCCTAGAAATCGTCCATCCAACACACCAAATTGTGAACAATGTCACCAACATCGCAGATAA
*
23980615 ATTGCCAATAATCAATATCGTGGACAAGTCACCAACATCGCAAATAAATTGCCGATAAACAATAT
196 ATTGCCAATAATCAATATCGTGGACAAGTCACCAACATCGCAAATAAATTGCCAATAAACAATAT
23980680 CGTGGACAAGTCACCAA
261 CGTGGACAAGTCACCAA
23980697 AATC
1 AATC
23980701 GCAAATATAC
Statistics
Matches: 270, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
277 270 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (277 bp):
AATCATATCAGTTTCATATAACTCAATATTTCACACTTATACTATACATGATCATGTCAATGCAC
ATTTCGTAAAACGATGCAGATTTTAGGAAAACGGTCCTACCCATTTTCGCTGCACGCCATGATCG
AGTTCCCTAGAAATCGTCCATCCAACACACCAAATTGTGAACAATGTCACCAACATCGCAGATAA
ATTGCCAATAATCAATATCGTGGACAAGTCACCAACATCGCAAATAAATTGCCAATAAACAATAT
CGTGGACAAGTCACCAA
Found at i:23980664 original size:47 final size:47
Alignment explanation
Indices: 23980590--23980724 Score: 180
Period size: 47 Copynumber: 2.8 Consensus size: 47
23980580 TAAATTGTGA
* * *
23980590 ACAATGTCACCAATATCGTAGATAAATTGCCAATAATCAATATCGTGG
1 ACAA-GTCACCAAAATCGCAAATAAATTGCCAATAATCAATATCGTGG
* * *
23980638 ACAAGTCACCAACATCGCAAATAAATTGCCGATAAACAATATCGTGG
1 ACAAGTCACCAAAATCGCAAATAAATTGCCAATAATCAATATCGTGG
* *
23980685 ACAAGTCACCAAAATCGCAAATATACTGCCACATAATCAA
1 ACAAGTCACCAAAATCGCAAATAAATTGCCA-ATAATCAA
23980725 AATCATGAAT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
47 65 0.86
48 11 0.14
ACGTcount: A:0.43, C:0.23, G:0.13, T:0.21
Consensus pattern (47 bp):
ACAAGTCACCAAAATCGCAAATAAATTGCCAATAATCAATATCGTGG
Found at i:23981759 original size:29 final size:30
Alignment explanation
Indices: 23981727--23981793 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 30
23981717 AACCCTACTC
*
23981727 AATTTTTTAATATTA-TTTATT-TTTATTAT
1 AATTTTTGAAT-TTATTTTATTATTTATTAT
23981756 AATTTTTGAATTTATTTTATTACATTTATTAT
1 AATTTTTGAATTTATTTTATT--ATTTATTAT
23981788 AATTTT
1 AATTTT
23981794 CTCAAACGGA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
28 3 0.09
29 16 0.48
32 14 0.42
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (30 bp):
AATTTTTGAATTTATTTTATTATTTATTAT
Found at i:23983977 original size:23 final size:24
Alignment explanation
Indices: 23983950--23984000 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
23983940 CCCAAACAAT
23983950 ATTTAAATTT-ATTTTAAGTTTAA
1 ATTTAAATTTAATTTTAAGTTTAA
*
23983973 ATTT-ATTTTAATTTTAAGTTTAA
1 ATTTAAATTTAATTTTAAGTTTAA
23983996 ATTTA
1 ATTTA
23984001 TTTAAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 4 0.16
23 21 0.84
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (24 bp):
ATTTAAATTTAATTTTAAGTTTAA
Found at i:23984001 original size:23 final size:23
Alignment explanation
Indices: 23983960--23984009 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
23983950 ATTTAAATTT
*
23983960 ATTTTAAGTTTAAATTTATTTTA
1 ATTTTAAGTTTAAATTTATTTAA
23983983 ATTTTAAGTTTAAATTTATTTAA
1 ATTTTAAGTTTAAATTTATTTAA
23984006 ATTT
1 ATTT
23984010 ACTAATGCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (23 bp):
ATTTTAAGTTTAAATTTATTTAA
Found at i:23984003 original size:17 final size:17
Alignment explanation
Indices: 23983951--23983994 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
23983941 CCAAACAATA
23983951 TTTAAATTTATTTTAAG
1 TTTAAATTTATTTTAAG
*
23983968 TTTAAATTTATTTTAAT
1 TTTAAATTTATTTTAAG
*
23983985 TTTAAGTTTA
1 TTTAAATTTA
23983995 AATTTATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (17 bp):
TTTAAATTTATTTTAAG
Found at i:23984004 original size:10 final size:11
Alignment explanation
Indices: 23983966--23984010 Score: 56
Period size: 10 Copynumber: 4.1 Consensus size: 11
23983956 ATTTATTTTA
23983966 AGTTTAAATTT
1 AGTTTAAATTT
* *
23983977 ATTTTAATTTT
1 AGTTTAAATTT
23983988 AAGTTTAAATTT
1 -AGTTTAAATTT
23984000 A-TTTAAATTT
1 AGTTTAAATTT
23984010 A
1 A
23984011 CTAATGCCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
10 10 0.34
11 10 0.34
12 9 0.31
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (11 bp):
AGTTTAAATTT
Found at i:23990575 original size:3 final size:3
Alignment explanation
Indices: 23990567--23990616 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
23990557 TTATGATATT
23990567 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
23990615 GA
1 GA
23990617 GGGATGACCG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:23992977 original size:78 final size:78
Alignment explanation
Indices: 23992882--23993338 Score: 590
Period size: 78 Copynumber: 5.9 Consensus size: 78
23992872 TGAAGATTTC
* * * * * *
23992882 AATCTTTTACCCTGAGCCTGAGGTAGATTGTAGCCATTCGATCTTTTACCCCGAGCTTGGGGCAG
1 AATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGCAG
* *
23992947 ATCACCACCAGCT
66 ATCACCATCAGCA
* * *
23992960 AATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATTCAATCTTTTACCCTGAGCTTGGGGTAG
1 AATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGCAG
* *
23993025 ATCACCACCAGCC
66 ATCACCATCAGCA
* * * * * *
23993038 AATCTCTTACCCTGAGCCTGGGGTATATTGCAGCCATTCAATCTTTTACCCCAAGCATAGGGCAG
1 AATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGCAG
23993103 ATCACCATCAGCA
66 ATCACCATCAGCA
* * * * *
23993116 AATCTCTTACCCCGAGCTTGGGCCAGATTGCAACCATTCGATCTTTTACCCCGAGCATGGGGCAG
1 AATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGCAG
23993181 ATCACCATCAGCA
66 ATCACCATCAGCA
* * * * *
23993194 AATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATCCAATCTTTTACCCCAAGCTTTGGGTAG
1 AATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGCAG
* *
23993259 ATCATCATCAGTA
66 ATCACCATCAGCA
* * * * *
23993272 AATCTCTTACCCCGAACCTAGGGCAGATTGCAACCATTCGATCTTTTACCCCGATCTTGGGGCAG
1 AATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGCAG
23993337 AT
66 AT
23993339 TGTAGCCATT
Statistics
Matches: 331, Mismatches: 48, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
78 331 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (78 bp):
AATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGCAG
ATCACCATCAGCA
Found at i:23993354 original size:78 final size:76
Alignment explanation
Indices: 23992881--23993606 Score: 476
Period size: 78 Copynumber: 9.3 Consensus size: 76
23992871 TTGAAGATTT
* * * * * *
23992881 CAATCTTTTACCCTGAGCCTGAGGTAGATTGTAGCCATTCGATCTTTTACCCCGAGCTTGGGGCA
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGCA
*
23992946 GA-TCACCACCAG
66 GATTCACCA--TG
* * *
23992958 CTAATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATTCAATCTTTTACCCTGAGCTTGGGGT
1 C-AATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGC
*
23993023 AGA-TCACCACCAG
65 AGATTCACCA--TG
* * * * * *
23993036 CCAATCTCTTACCCTGAGCCTGGGGTATATTGCAGCCATTCAATCTTTTACCCCAAGCATAGGGC
1 -CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGC
23993101 AGA-TCACCATCAG
65 AGATTCACCAT--G
* * * * *
23993114 CAAATCTCTTACCCCGAGCTTGGGCCAGATTGCAACCATTCGATCTTTTACCCCGAGCATGGGGC
1 C-AATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGC
23993179 AGA-TCACCATCAG
65 AGATTCACCAT--G
* * * * *
23993192 CAAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATCCAATCTTTTACCCCAAGCTTTGGGT
1 C-AATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGC
*
23993257 AGA-TCATCATCAG
65 AGATTCACCAT--G
* * * * * *
23993270 TAAATCTCTTACCCCGAACCTAGGGCAGATTGCAACCATTCGATCTTTTACCCCGATCTTGGGGC
1 -CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGC
* *
23993335 AGATTGTAGCCATT
65 AGATT-CA-CCATG
* * * * * * *
23993349 CAATCTTTTACCCCAAGCTTGGGGCATA-T-CA-CCA-TCAACGATATTTTACCCCAAGCCTGGG
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTC-A--ATCTTTTACCCCGAGCTTGGG
*
23993410 GTAGA-TCACCATCAG
63 GCAGATTCACCAT--G
* * * * * * *
23993425 CGATCTTTTACCCCGAGCCTAGGGCATA-T-CA-CCATCAGCCAATCTCTTACCCCGAGCCTGGG
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCAT---TCAATCTTTTACCCCGAGCTTGGG
* *
23993487 GCAGATTGCAGCTATT
63 GCAGATT-CA-CCATG
* ** * * *
23993503 CGATCTCTTACCCCGAGTTTGGGGCAGA-T-CA-CCATCAGCCAATCTCTTACCCCGAGCTTGGA
1 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCAT---TCAATCTTTTACCCCGAGCTTGGG
* * *
23993565 GTAGATTGTAACCATT
63 GCAGA-T-TCACCATG
* *
23993581 CGATCTCTTACCCCGAGCCTAGGGCA
1 CAATCTCTTACCCCGAGCCTGGGGCA
23993607 AATCATCATC
Statistics
Matches: 538, Mismatches: 88, Indels: 45
0.80 0.13 0.07
Matches are distributed among these distances:
74 6 0.01
75 4 0.01
76 33 0.06
77 46 0.09
78 433 0.80
79 7 0.01
80 6 0.01
81 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (76 bp):
CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCCATTCAATCTTTTACCCCGAGCTTGGGGCA
GATTCACCATG
Found at i:23993354 original size:156 final size:155
Alignment explanation
Indices: 23992879--23993531 Score: 602
Period size: 156 Copynumber: 4.2 Consensus size: 155
23992869 TATTGAAGAT
* * * * * * * * *
23992879 TTCAATCTTTTACCCTGAGCCTGAGGTAGATTGTAGCCATTCGATCTTTTACCCCGAGCTTGGGG
1 TTCAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATCCAATCTTTTACCCCAAGCTTGGGG
* * * * *
23992944 CAGATCACCACCAGCT-AATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATTCAATCTTTTA
66 CAGATCACCATCAG-TAAATCTCTTACCCCGAACCTAGGGCAGATTGCAACCATTCAATCTTTTA
* * **
23993008 CCCTGAGCTTGGGGTAGATCACCACCA
130 CCCCGAGCTTGGGGCAGAT-TGCACCA
** * * * * * * *
23993035 GCCAATCTCTTACCCTGAGCCTGGGGTATATTGCAGCCATTCAATCTTTTACCCCAAGCATAGGG
1 TTCAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATCCAATCTTTTACCCCAAGCTTGGGG
* * * *
23993100 CAGATCACCATCAGCAAATCTCTTACCCCG-AGCTTGGGCCAGATTGCAACCATTCGATCTTTTA
66 CAGATCACCATCAGTAAATCTCTTACCCCGAACCTAGGG-CAGATTGCAACCATTCAATCTTTTA
*
23993164 CCCCGAGCATGGGGCAGA-T-CACCA
130 CCCCGAGCTTGGGGCAGATTGCACCA
* *
23993188 TCAGCAAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATCCAATCTTTTACCCCAAGCTTT
1 T--TC-AATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATCCAATCTTTTACCCCAAGCTTG
* * *
23993253 GGGTAGATCATCATCAGTAAATCTCTTACCCCGAACCTAGGGCAGATTGCAACCATTCGATCTTT
63 GGGCAGATCACCATCAGTAAATCTCTTACCCCGAACCTAGGGCAGATTGCAACCATTCAATCTTT
* *
23993318 TACCCCGATCTTGGGGCAGATTGTAGCCA
128 TACCCCGAGCTTGGGGCAGATTGCA-CCA
* * * * * *
23993347 TTCAATCTTTTACCCCAAGCTTGGGGCATA-T-CA-CCATCAACGATATTTTACCCCAAGCCTGG
1 TTCAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATC--CAATCTTTTACCCCAAGCTTGG
* ** * * * ** * * ** *
23993409 GGTAGATCACCATCAG-CGATCTTTTACCCCGAGCCTAGGGCATATCACCATCAGCCAATCTCTT
64 GGCAGATCACCATCAGTAAATCTCTTACCCCGAACCTAGGGCAGATTGCAACCATTCAATCTTTT
* *
23993473 ACCCCGAGCCTGGGGCAGATTGCAGCTA
129 ACCCCGAGCTTGGGGCAGATTGCA-CCA
* *
23993501 TTCGATCTCTTACCCCGAGTTTGGGGCAGAT
1 TTCAATCTCTTACCCCGAGCTTGGGGCAGAT
23993532 CACCATCAGC
Statistics
Matches: 415, Mismatches: 70, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
153 10 0.02
154 86 0.21
155 40 0.10
156 266 0.64
157 8 0.02
158 1 0.00
159 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (155 bp):
TTCAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATCCAATCTTTTACCCCAAGCTTGGGG
CAGATCACCATCAGTAAATCTCTTACCCCGAACCTAGGGCAGATTGCAACCATTCAATCTTTTAC
CCCGAGCTTGGGGCAGATTGCACCA
Found at i:23993362 original size:39 final size:38
Alignment explanation
Indices: 23992879--23993598 Score: 410
Period size: 39 Copynumber: 18.5 Consensus size: 38
23992869 TATTGAAGAT
* * * * *
23992879 TTCAATCTTTTACCCTGAGCCTGAGGTAGATTGTAGCCA
1 TTCAATCTTTTACCCCGAGCTTGGGGCAGATTGCA-CCA
* **
23992918 TTCGATCTTTTACCCCGAGCTTGGGGCAGATCACCACCA
1 TTCAATCTTTTACCCCGAGCTTGGGGCAGAT-TGCACCA
* * * *
23992957 -GCTAATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCA
1 TTC-AATCTTTTACCCCGAGCTTGGGGCAGATTGCA-CCA
* * **
23992996 TTCAATCTTTTACCCTGAGCTTGGGGTAGATCACCACCA
1 TTCAATCTTTTACCCCGAGCTTGGGGCAGAT-TGCACCA
** * * * * *
23993035 GCCAATCTCTTACCCTGAGCCTGGGGTATATTGCAGCCA
1 TTCAATCTTTTACCCCGAGCTTGGGGCAGATTGCA-CCA
* * *
23993074 TTCAATCTTTTACCCCAAGCATAGGGCAGA-T-CACCA
1 TTCAATCTTTTACCCCGAGCTTGGGGCAGATTGCACCA
* * *
23993110 TCAGCAAATCTCTTACCCCGAGCTTGGGCCAGATTGCAACCA
1 T--TC-AATCTTTTACCCCGAGCTTGGGGCAGATTGC-ACCA
* *
23993152 TTCGATCTTTTACCCCGAGCATGGGGCAGA-T-CACCA
1 TTCAATCTTTTACCCCGAGCTTGGGGCAGATTGCACCA
* *
23993188 TCAGCAAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCA
1 T--TC-AATCTTTTACCCCGAGCTTGGGGCAGATTGCA-CCA
* * * * *
23993230 TCCAATCTTTTACCCCAAGCTTTGGGTAGATCAT-CATCA
1 TTCAATCTTTTACCCCGAGCTTGGGGCAGAT--TGCACCA
* * * * * *
23993269 GTAAATCTCTTACCCCGAACCTAGGGCAGATTGCAACCA
1 TTCAATCTTTTACCCCGAGCTTGGGGCAGATTGC-ACCA
* * *
23993308 TTCGATCTTTTACCCCGATCTTGGGGCAGATTGTAGCCA
1 TTCAATCTTTTACCCCGAGCTTGGGGCAGATTGCA-CCA
* *
23993347 TTCAATCTTTTACCCCAAGCTTGGGGCATA-T-CACCA
1 TTCAATCTTTTACCCCGAGCTTGGGGCAGATTGCACCA
* * * *
23993383 -TCAACGATATTTTACCCCAAGCCTGGGGTAGA-T-CACCA
1 TTC-A--ATCTTTTACCCCGAGCTTGGGGCAGATTGCACCA
* * *
23993421 -TCAGCGATCTTTTACCCCGAGCCTAGGGCATA-T-CACCA
1 TTCA---ATCTTTTACCCCGAGCTTGGGGCAGATTGCACCA
* * * *
23993459 TCAGCCAATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCTA
1 T---TCAATCTTTTACCCCGAGCTTGGGGCAGATTGCA-CCA
* * *
23993501 TTCGATCTCTTACCCCGAGTTTGGGGCAGA-T-CACCA
1 TTCAATCTTTTACCCCGAGCTTGGGGCAGATTGCACCA
* * * * *
23993537 TCAGCCAATCTCTTACCCCGAGCTTGGAGTAGATTGTAACCA
1 T---TCAATCTTTTACCCCGAGCTTGGGGCAGATTG-CACCA
* *
23993579 TTCGATCTCTTACCCCGAGC
1 TTCAATCTTTTACCCCGAGC
23993599 CTAGGGCAAA
Statistics
Matches: 531, Mismatches: 110, Indels: 80
0.74 0.15 0.11
Matches are distributed among these distances:
35 2 0.00
36 16 0.03
37 8 0.02
38 71 0.13
39 398 0.75
40 11 0.02
41 6 0.01
42 19 0.04
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (38 bp):
TTCAATCTTTTACCCCGAGCTTGGGGCAGATTGCACCA
Found at i:23993401 original size:38 final size:38
Alignment explanation
Indices: 23993354--23993489 Score: 157
Period size: 38 Copynumber: 3.6 Consensus size: 38
23993344 CCATTCAATC
*
23993354 TTTTACCCCAAGCTTGGGGCATATCACCATCAACGATA
1 TTTTACCCCAAGCCTGGGGCATATCACCATCAACGATA
* * * *
23993392 TTTTACCCCAAGCCTGGGGTAGATCACCATCAGCGATC
1 TTTTACCCCAAGCCTGGGGCATATCACCATCAACGATA
* * * *
23993430 TTTTACCCCGAGCCTAGGGCATATCACCATCAGCCA-A
1 TTTTACCCCAAGCCTGGGGCATATCACCATCAACGATA
*
23993467 TCTCTTACCCCGAGCCTGGGGCA
1 T-T-TTACCCCAAGCCTGGGGCA
23993490 GATTGCAGCT
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
37 1 0.01
38 65 0.77
39 18 0.21
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (38 bp):
TTTTACCCCAAGCCTGGGGCATATCACCATCAACGATA
Found at i:23993645 original size:271 final size:271
Alignment explanation
Indices: 23993076--23993645 Score: 639
Period size: 271 Copynumber: 2.1 Consensus size: 271
23993066 TGCAGCCATT
* * * * * * * **
23993076 CAATCTTTTACCCCAAGCATAGGGCAGATCACCATCAGC-AAATCTCTTACCCCGAGCTTGGGCC
1 CAATCTCTTACCCCAAGCATGGGGCATATCACCATCAACGATAT-T-TTACCCCAAGCCTGGGGT
* *
23993140 AGATTGCAACCAT--TCGATCTTTTACCCCGAGCATGGGGCAGATCACCATCAGCAAATCTCTTA
64 AGA-T-C-ACCATCAGCGATCTTTTACCCCGAGCATAGGGCAGATCACCATCAGCAAATCTCTTA
* * * *
23993203 CCCCGAGCTTGGGGCAGATTGCAGCCATCCAATCTTTTACCCCAAGCTTTGGGTAGATCATCATC
126 CCCCGAGCCTGGGGCAGATTGCAGCCATCCAATCTCTTACCCCAAGCTTTGGGCAGATCACCATC
* * * * *
23993268 AGTAAATCTCTTACCCCGAACCTAGGGCAGATTGCAACCATTCGATCTTTTACCCCGATCTTGGG
191 AGCAAATCTCTTACCCCGAACCTAGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCCTAGG
* ** **
23993333 GCAGATTGTAGCCATT
256 GCAAATCATAGCCAGC
* *
23993349 CAATCTTTTACCCCAAGCTTGGGGCATATCACCATCAACGATATTTTACCCCAAGCCTGGGGTAG
1 CAATCTCTTACCCCAAGCATGGGGCATATCACCATCAACGATATTTTACCCCAAGCCTGGGGTAG
* * *
23993414 ATCACCATCAGCGATCTTTTACCCCGAGCCTAGGGCATATCACCATCAGCCAATCTCTTACCCCG
66 ATCACCATCAGCGATCTTTTACCCCGAGCATAGGGCAGATCACCATCAGCAAATCTCTTACCCCG
* * * * *
23993479 AGCCTGGGGCAGATTGCAGCTATTCGATCTCTTACCCCGAG-TTTGGGGCAGATCACCATCAGCC
131 AGCCTGGGGCAGATTGCAGCCATCCAATCTCTTACCCCAAGCTTT-GGGCAGATCACCATCAGCA
* * * *
23993543 AATCTCTTACCCCG-AGCTTGGAGTAGATTGTAACCATTCGATCTCTTACCCCGAGCCTAGGGCA
195 AATCTCTTACCCCGAACCTAGG-GCAGATTGCAACCATTCGATCTCTTACCCCGAGCCTAGGGCA
*
23993607 AATCATCA-TCAGC
259 AATCAT-AGCCAGC
* * *
23993620 CAATCTCTTACTCCGATCATGGGGCA
1 CAATCTCTTACCCCAAGCATGGGGCA
23993646 GATGGTAGTC
Statistics
Matches: 248, Mismatches: 43, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
269 5 0.02
270 9 0.04
271 177 0.71
272 18 0.07
273 36 0.15
274 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (271 bp):
CAATCTCTTACCCCAAGCATGGGGCATATCACCATCAACGATATTTTACCCCAAGCCTGGGGTAG
ATCACCATCAGCGATCTTTTACCCCGAGCATAGGGCAGATCACCATCAGCAAATCTCTTACCCCG
AGCCTGGGGCAGATTGCAGCCATCCAATCTCTTACCCCAAGCTTTGGGCAGATCACCATCAGCAA
ATCTCTTACCCCGAACCTAGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCCTAGGGCAAA
TCATAGCCAGC
Found at i:23993659 original size:78 final size:77
Alignment explanation
Indices: 23993312--23993661 Score: 312
Period size: 78 Copynumber: 4.5 Consensus size: 77
23993302 CAACCATTCG
* * * * * * * * *
23993312 ATCTTTTACCCCGATCTTGGGGCAGATTGTAGCCATTCAATCTTTTACCCCAAGCTTGGGGCATA
1 ATCTCTTACCCCGAGCATGGGGCAGATTGTAG-CATTCGATCTCTTACCCCGAGCCTAGGGCAAA
* *
23993377 TCACCATCAACGA
65 TCACCATCAGCCA
* * * * * * *
23993390 TAT-T-TTACCCCAAGCCTGGGGTAGA-T-CACCATCAGCGATCTTTTACCCCGAGCCTAGGGCA
1 -ATCTCTTACCCCGAGCATGGGGCAGATTGTAGCAT--TCGATCTCTTACCCCGAGCCTAGGGCA
*
23993451 TATCACCATCAGCCA
63 AATCACCATCAGCCA
* * ** * *
23993466 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAGCTATTCGATCTCTTACCCCGAGTTTGGGGCAGA
1 ATCTCTTACCCCGAGCATGGGGCAGATTGTAGC-ATTCGATCTCTTACCCCGAGCCTAGGGCAAA
23993531 TCACCATCAGCCA
65 TCACCATCAGCCA
* * * *
23993544 ATCTCTTACCCCGAGCTTGGAGTAGATTGTAACCATTCGATCTCTTACCCCGAGCCTAGGGCAAA
1 ATCTCTTACCCCGAGCATGGGGCAGATTGT-AGCATTCGATCTCTTACCCCGAGCCTAGGGCAAA
*
23993609 TCATCATCAGCCA
65 TCACCATCAGCCA
* * *
23993622 ATCTCTTACTCCGATCATGGGGCAGATGGTAGTCATTCGA
1 ATCTCTTACCCCGAGCATGGGGCAGATTGTAG-CATTCGA
23993662 AGCAATAAAG
Statistics
Matches: 223, Mismatches: 39, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
74 3 0.01
75 3 0.01
76 37 0.17
77 37 0.17
78 134 0.60
79 7 0.03
80 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (77 bp):
ATCTCTTACCCCGAGCATGGGGCAGATTGTAGCATTCGATCTCTTACCCCGAGCCTAGGGCAAAT
CACCATCAGCCA
Found at i:23993660 original size:156 final size:152
Alignment explanation
Indices: 23993195--23993661 Score: 413
Period size: 154 Copynumber: 3.0 Consensus size: 152
23993185 CCATCAGCAA
* * * *
23993195 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATC--CAATCTTTTACCCCAAGCTTTGG-GT
1 ATCTCTTACCCCAAGCTTGGGGCAGA-T-CA-CCATCAACCATATTTTACCCCAAGC-CTGGAGT
* * ** * * ** * * ** * *
23993257 AGATCATCATCAGTAAATCTCTTACCCCGAACCTAGGGCAGATTGCAACCATTCGATCTTTTACC
62 AGATAACCAT-AG-CGATCTCTTACCCCGAGCCTAGGGCAAATCACCATCAGCCAATCTCTTACC
* *
23993322 CCGATCTTGGGGCAGATTGTAGCCATTCA
125 CCGATCATGGGGCAGATTGTAG-CATTCG
* * * *
23993351 ATCTTTTACCCCAAGCTTGGGGCATATCACCATCAACGATATTTTACCCCAAGCCTGGGGTAGAT
1 ATCTCTTACCCCAAGCTTGGGGCAGATCACCATCAACCATATTTTACCCCAAGCCTGGAGTAGAT
* * * *
23993416 CACCATCAGCGATCTTTTACCCCGAGCCTAGGGCATATCACCATCAGCCAATCTCTTACCCCGAG
66 AACCAT-AGCGATCTCTTACCCCGAGCCTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGAT
* *
23993481 CCTGGGGCAGATTGCAGCTATTCG
130 CATGGGGCAGATTGTAGC-ATTCG
* * * * *
23993505 ATCTCTTACCCCGAGTTTGGGGCAGATCACCATCAGCCA-ATCTCTTACCCCGAGCTTGGAGTAG
1 ATCTCTTACCCCAAGCTTGGGGCAGATCACCATCAACCATAT-T-TTACCCCAAGCCTGGAGTAG
* * *
23993569 ATTGTAACCAT-TCGATCTCTTACCCCGAGCCTAGGGCAAATCATCATCAGCCAATCTCTTACTC
64 A---TAACCATAGCGATCTCTTACCCCGAGCCTAGGGCAAATCACCATCAGCCAATCTCTTACCC
*
23993633 CGATCATGGGGCAGATGGTAGTCATTCG
126 CGATCATGGGGCAGATTGTAG-CATTCG
23993661 A
1 A
23993662 AGCAATAAAG
Statistics
Matches: 258, Mismatches: 43, Indels: 20
0.80 0.13 0.06
Matches are distributed among these distances:
153 8 0.03
154 100 0.39
155 49 0.19
156 94 0.36
157 1 0.00
158 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (152 bp):
ATCTCTTACCCCAAGCTTGGGGCAGATCACCATCAACCATATTTTACCCCAAGCCTGGAGTAGAT
AACCATAGCGATCTCTTACCCCGAGCCTAGGGCAAATCACCATCAGCCAATCTCTTACCCCGATC
ATGGGGCAGATTGTAGCATTCG
Found at i:23994135 original size:6 final size:6
Alignment explanation
Indices: 23994124--23994175 Score: 56
Period size: 6 Copynumber: 9.0 Consensus size: 6
23994114 ACCCAAACAG
* *
23994124 AATTTA AATTTA AATTT- ATTTTA AGTTTA AATTT- -ATTTGA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTT-A AATTTA
23994170 AATTTA
1 AATTTA
23994176 CTAATGTCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
4 4 0.10
5 4 0.10
6 27 0.69
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (6 bp):
AATTTA
Found at i:23994152 original size:17 final size:17
Alignment explanation
Indices: 23994126--23994175 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
23994116 CCAAACAGAA
23994126 TTTAAATTTAAATTTAT
1 TTTAAATTTAAATTTAT
*
23994143 TTTAAGTTTAAATTTAT
1 TTTAAATTTAAATTTAT
*
23994160 TTGAAATTTAAATTTA
1 TTTAAATTTAAATTTA
23994176 CTAATGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (17 bp):
TTTAAATTTAAATTTAT
Found at i:23995855 original size:163 final size:163
Alignment explanation
Indices: 23995605--23995995 Score: 614
Period size: 163 Copynumber: 2.4 Consensus size: 163
23995595 TCTTCCGTAT
* * * * ** * *
23995605 TTTTTGA-TTGTTTCAATTTCAT-CTTTAATGCCATTTTTAATTTATTATAAATTTA-CCCAGTA
1 TTTTTGACTTGTTTTAATTTCATCCTTAAAT-CAAGTTTTGTTTTATTTTAAA-TTAGCCTAGTA
23995667 A--TTTTGAATCATTTTCAATTTAGTCATTTAACTCTCTAGAAGCC-AGAAAAGCTGCCACATGT
64 ATTTTTTGAATCATTTTCAATTTAGTCATTTAACTCTCTAGAAGCCTA-AAAAGCTGCCACATGT
23995729 CTATTTTTGGGTTATTTGTGCAAATGGTCATTTCTA
128 CTATTTTTGGGTTATTTGTGCAAATGGTCATTTCTA
*
23995765 TTTTTGACTTGTTTTAATTTCATCCTTAAATCAAGTTTTGTTTTATTTTAAATTAGCTTAGTAAT
1 TTTTTGACTTGTTTTAATTTCATCCTTAAATCAAGTTTTGTTTTATTTTAAATTAGCCTAGTAAT
* *
23995830 TTTTTGAATCATTTTCAATTTAGTCATTTAACTCTCTAGAAGCCTAAGAAGCTGCCACGTGTCTA
66 TTTTTGAATCATTTTCAATTTAGTCATTTAACTCTCTAGAAGCCTAAAAAGCTGCCACATGTCTA
23995895 TTTTTGGGTTATTTGTGCAAATGGTCATTTCTA
131 TTTTTGGGTTATTTGTGCAAATGGTCATTTCTA
23995928 TTTTTGACTTGTTTTAATTTCATCCTTAAATCAAGTTTTGTTTTATTTTAAATTAGCCTAGTAAT
1 TTTTTGACTTGTTTTAATTTCATCCTTAAATCAAGTTTTGTTTTATTTTAAATTAGCCTAGTAAT
23995993 TTT
66 TTT
23995996 AAAAGCTATA
Statistics
Matches: 213, Mismatches: 12, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
160 10 0.05
161 36 0.17
162 6 0.03
163 160 0.75
164 1 0.00
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.48
Consensus pattern (163 bp):
TTTTTGACTTGTTTTAATTTCATCCTTAAATCAAGTTTTGTTTTATTTTAAATTAGCCTAGTAAT
TTTTTGAATCATTTTCAATTTAGTCATTTAACTCTCTAGAAGCCTAAAAAGCTGCCACATGTCTA
TTTTTGGGTTATTTGTGCAAATGGTCATTTCTA
Found at i:23996167 original size:29 final size:29
Alignment explanation
Indices: 23996116--23996256 Score: 140
Period size: 29 Copynumber: 4.8 Consensus size: 29
23996106 TTTGAACCTC
* * * *
23996116 GAACTTCTTAAAAATTACGTTTTTTCCCCT
1 GAACTTC-CAAAAATCACATTTTTGCCCCT
*
23996146 GAACTTCCAAAAATAACATTTTTGCCCCT
1 GAACTTCCAAAAATCACATTTTTGCCCCT
* * *
23996175 AAACTTCTAAAAATCACATTTTT-ACCCT
1 GAACTTCCAAAAATCACATTTTTGCCCCT
* **
23996203 CGAACTTCTCAAAAATTACATTTTTGCCATT
1 -GAACTTC-CAAAAATCACATTTTTGCCCCT
*
23996234 AAACTTCCAAAAATCACATTTTT
1 GAACTTCCAAAAATCACATTTTT
23996257 ACTTTGAACT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
28 4 0.04
29 59 0.64
30 27 0.29
31 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (29 bp):
GAACTTCCAAAAATCACATTTTTGCCCCT
Found at i:23996180 original size:59 final size:59
Alignment explanation
Indices: 23996117--23996258 Score: 189
Period size: 59 Copynumber: 2.4 Consensus size: 59
23996107 TTGAACCTCG
* * * *
23996117 AACTTCTTAAAAATTACGTTTTTTCCC-CTGAACTTC-CAAAAATAACATTTTTGCCCCTA
1 AACTTC-TAAAAATCACATTTTTACCCTC-GAACTTCTCAAAAATAACATTTTTGCCACTA
* *
23996176 AACTTCTAAAAATCACATTTTTACCCTCGAACTTCTCAAAAATTACATTTTTGCCATTA
1 AACTTCTAAAAATCACATTTTTACCCTCGAACTTCTCAAAAATAACATTTTTGCCACTA
*
23996235 AACTTCCAAAAATCACATTTTTAC
1 AACTTCTAAAAATCACATTTTTAC
23996259 TTTGAACTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
58 24 0.32
59 50 0.68
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.37
Consensus pattern (59 bp):
AACTTCTAAAAATCACATTTTTACCCTCGAACTTCTCAAAAATAACATTTTTGCCACTA
Found at i:23996240 original size:88 final size:89
Alignment explanation
Indices: 23996082--23996256 Score: 235
Period size: 88 Copynumber: 2.0 Consensus size: 89
23996072 CCCAAAAGGT
* * * * * * * *
23996082 CCCTAAATTTTCTAGAAATCATATTTTGAACCTCGAACTTCTTAAAAATTACGTTTTTTCCCCTG
1 CCCTAAATCTTCTAAAAATCACATTTTGAACCTCGAACTTCTCAAAAATTACATTTTTGCCACTA
23996147 AACTTCCAAAAATAACATTTTTGC
66 AACTTCCAAAAATAACATTTTTGC
* * *
23996171 CCCTAAA-CTTCTAAAAATCACATTTTTACCCTCGAACTTCTCAAAAATTACATTTTTGCCATTA
1 CCCTAAATCTTCTAAAAATCACATTTTGAACCTCGAACTTCTCAAAAATTACATTTTTGCCACTA
*
23996235 AACTTCCAAAAATCACATTTTT
66 AACTTCCAAAAATAACATTTTT
23996257 ACTTTGAACT
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
88 67 0.91
89 7 0.09
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.37
Consensus pattern (89 bp):
CCCTAAATCTTCTAAAAATCACATTTTGAACCTCGAACTTCTCAAAAATTACATTTTTGCCACTA
AACTTCCAAAAATAACATTTTTGC
Found at i:23996270 original size:29 final size:28
Alignment explanation
Indices: 23996145--23996284 Score: 109
Period size: 29 Copynumber: 4.8 Consensus size: 28
23996135 TTTTTTCCCC
* * **
23996145 TGAACTTCCAAAAATAACATTTTTGCCCC
1 TGAACTTCCAAAAATCACATTTTT-ACAT
* * *
23996174 TAAACTTCTAAAAATCACATTTTTACCCT
1 TGAACTTCCAAAAATCACATTTTTA-CAT
* * *
23996203 CGAACTTCTCAAAAATTACATTTTTGCCAT
1 TGAACTTC-CAAAAATCACATTTTT-ACAT
* *
23996233 TAAACTTCCAAAAATCACATTTTTACTT
1 TGAACTTCCAAAAATCACATTTTTACAT
* *
23996261 TGAACTTTCCCAAAATGACATTTT
1 TGAAC-TTCCAAAAATCACATTTT
23996285 ATCCTTAAAA
Statistics
Matches: 88, Mismatches: 19, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
28 6 0.07
29 60 0.68
30 22 0.25
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (28 bp):
TGAACTTCCAAAAATCACATTTTTACAT
Found at i:23996275 original size:59 final size:59
Alignment explanation
Indices: 23996125--23996284 Score: 182
Period size: 59 Copynumber: 2.7 Consensus size: 59
23996115 CGAACTTCTT
* * * * * *
23996125 AAAAATTACGTTTTTTCCCCTGAACTT-CCAAAAATAACATTTTTGCCCCTAAACTTCT
1 AAAAATCACATTTTTACCCTTGAACTTCCCAAAAATAACATTTTTGCCACTAAACTTCC
* * * *
23996183 AAAAATCACATTTTTACCCTCGAACTTCTCAAAAATTACATTTTTGCCATTAAACTTCC
1 AAAAATCACATTTTTACCCTTGAACTTCCCAAAAATAACATTTTTGCCACTAAACTTCC
* *
23996242 AAAAATCACATTTTTA-CTTTGAACTTTCCC-AAAATGACATTTT
1 AAAAATCACATTTTTACCCTTGAAC-TTCCCAAAAATAACATTTT
23996285 ATCCTTAAAA
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
58 40 0.47
59 46 0.53
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (59 bp):
AAAAATCACATTTTTACCCTTGAACTTCCCAAAAATAACATTTTTGCCACTAAACTTCC
Found at i:23996457 original size:15 final size:15
Alignment explanation
Indices: 23996430--23996471 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
23996420 TGATTCATGA
23996430 TTCGTAT-TTTATTT
1 TTCGTATATTTATTT
*
23996444 TTCTTATATTTA-TT
1 TTCGTATATTTATTT
23996458 TTCGTATATTTATT
1 TTCGTATATTTATT
23996472 CATTCATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.19, C:0.07, G:0.05, T:0.69
Consensus pattern (15 bp):
TTCGTATATTTATTT
Found at i:23996487 original size:30 final size:28
Alignment explanation
Indices: 23996430--23996487 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 28
23996420 TGATTCATGA
* * *
23996430 TTCGTATTTTATTTTTCTTATATTTATT
1 TTCGTATTTTATTATTCATATAATTATT
23996458 TTCGTATATTTATTCATTCATATAATTATT
1 TTCGTAT-TTTATT-ATTCATATAATTATT
23996488 CGTACTTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 7 0.28
29 6 0.24
30 12 0.48
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.64
Consensus pattern (28 bp):
TTCGTATTTTATTATTCATATAATTATT
Found at i:23998381 original size:15 final size:16
Alignment explanation
Indices: 23998350--23998382 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23998340 AAGAACGATG
*
23998350 TAAGAAAGAGAAGAGA
1 TAAGAAAAAGAAGAGA
23998366 TAAGAAAAAG-AGAGA
1 TAAGAAAAAGAAGAGA
23998381 TA
1 TA
23998383 GATGGGAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (16 bp):
TAAGAAAAAGAAGAGA
Found at i:23998760 original size:16 final size:17
Alignment explanation
Indices: 23998739--23998774 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
23998729 AACTAGCTGA
23998739 AAAT-AAACAACAAAAG
1 AAATAAAACAACAAAAG
*
23998755 AAATAAAACAATAAAAG
1 AAATAAAACAACAAAAG
23998772 AAA
1 AAA
23998775 ATGAAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.78, C:0.08, G:0.06, T:0.08
Consensus pattern (17 bp):
AAATAAAACAACAAAAG
Found at i:23999681 original size:43 final size:42
Alignment explanation
Indices: 23999587--23999715 Score: 213
Period size: 43 Copynumber: 3.0 Consensus size: 42
23999577 ATGCCGTTAT
* *
23999587 AGAACATGGTCTTTAGCAGCGCTTTCCCACAATCGCCGCTAA
1 AGAACATGGTCTTTAGCGGCGCTTTCCCACAAACGCCGCTAA
*
23999629 AGAACATGGTCTTTAGCGGCGCTTTCCCCATAAACGCCGCTAA
1 AGAACATGGTCTTTAGCGGCGCTTT-CCCACAAACGCCGCTAA
23999672 AGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
1 AGAACATGGTCTTTAGCGGCGC-TTTCCCACAAACGCCGCTAA
23999715 A
1 A
23999716 TTAACAGATT
Statistics
Matches: 81, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
42 24 0.30
43 54 0.67
44 3 0.04
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.23
Consensus pattern (42 bp):
AGAACATGGTCTTTAGCGGCGCTTTCCCACAAACGCCGCTAA
Found at i:23999801 original size:15 final size:15
Alignment explanation
Indices: 23999781--23999809 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23999771 TTTTCCTATA
23999781 AATTCAAATCCAACT
1 AATTCAAATCCAACT
23999796 AATTCAAATCCAAC
1 AATTCAAATCCAAC
23999810 CAATAACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (15 bp):
AATTCAAATCCAACT
Found at i:23999820 original size:19 final size:16
Alignment explanation
Indices: 23999781--23999823 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
23999771 TTTTCCTATA
23999781 AATTCAAATCCAAC-T
1 AATTCAAATCCAACAT
23999796 AATTCAAATCCAACCAAT
1 AATTCAAATCCAA-C-AT
23999814 AACTTCAAAT
1 AA-TTCAAAT
23999824 ATGAATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 13 0.54
16 1 0.04
18 3 0.12
19 7 0.29
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (16 bp):
AATTCAAATCCAACAT
Found at i:24000074 original size:21 final size:21
Alignment explanation
Indices: 24000045--24000100 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
24000035 CTTGCCTCGT
*
24000045 TGCTACCTCCGCTTCCCTCAC
1 TGCTGCCTCCGCTTCCCTCAC
* *
24000066 TGTTGCCT-CGACTTCCCTCAT
1 TGCTGCCTCCG-CTTCCCTCAC
24000087 TGCTGCCTCCGCTT
1 TGCTGCCTCCGCTT
24000101 TAAGTTGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.07, C:0.45, G:0.14, T:0.34
Consensus pattern (21 bp):
TGCTGCCTCCGCTTCCCTCAC
Found at i:24004650 original size:8 final size:8
Alignment explanation
Indices: 24004648--24004683 Score: 54
Period size: 8 Copynumber: 4.2 Consensus size: 8
24004638 ATTAAATATT
24004648 TAATTAAA
1 TAATTAAA
24004656 TAATTAAATA
1 TAATT-AA-A
24004666 TAATTAAA
1 TAATTAAA
24004674 TAATTAAA
1 TAATTAAA
24004682 TA
1 TA
24004684 TTTGGGTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 16 0.62
9 4 0.15
10 6 0.23
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
TAATTAAA
Found at i:24004671 original size:18 final size:18
Alignment explanation
Indices: 24004634--24004684 Score: 84
Period size: 18 Copynumber: 2.7 Consensus size: 18
24004624 GGTTGTTTTT
24004634 AATAATTAAATATTTAATTA
1 AATAATTAAATA--TAATTA
24004654 AATAATTAAATATAATTA
1 AATAATTAAATATAATTA
24004672 AATAATTAAATAT
1 AATAATTAAATAT
24004685 TTGGGTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 19 0.61
20 12 0.39
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AATAATTAAATATAATTA
Found at i:24004708 original size:34 final size:34
Alignment explanation
Indices: 24004665--24004917 Score: 144
Period size: 34 Copynumber: 7.3 Consensus size: 34
24004655 ATAATTAAAT
24004665 ATAATTAAATAATTAAATATTTGGGTTATTTTTA
1 ATAATTAAATAATTAAATATTTGGGTTATTTTTA
* *
24004699 ATAATTAAATAATTAATTAATTAATTAATTGGGTTGTTTTAA
1 ATAATTAAATAATT-A--AA-T-A-T--TTGGGTTATTTTTA
* * *
24004741 ATAATTAAATAATTAAGTATTTAGGTTGTTTTTA
1 ATAATTAAATAATTAAATATTTGGGTTATTTTTA
* *** * *
24004775 ATAATTAAAT-ATT---TAATT-AAATA-ATTAA
1 ATAATTAAATAATTAAATATTTGGGTTATTTTTA
** **
24004803 AT-ATT-TTTAATTAAATATTTGGAATATTTTTA
1 ATAATTAAATAATTAAATATTTGGGTTATTTTTA
* * * *
24004835 ATAATTAATTAATTAATCAATTAATTGGGTTACTTTAA
1 ATAATTAAATAATT-A--AA-TATTTGGGTTATTTTTA
* * *
24004873 ATATTTAAATAATTAAATATTTAGGTTGTTTTTA
1 ATAATTAAATAATTAAATATTTGGGTTATTTTTA
24004907 ATAATTAAATA
1 ATAATTAAATA
24004918 TTATTTATAA
Statistics
Matches: 167, Mismatches: 32, Indels: 40
0.70 0.13 0.17
Matches are distributed among these distances:
26 1 0.01
27 6 0.04
28 5 0.03
29 1 0.01
30 8 0.05
31 4 0.02
32 5 0.03
33 6 0.04
34 64 0.38
35 4 0.02
36 1 0.01
37 6 0.04
38 26 0.16
39 2 0.01
40 1 0.01
41 1 0.01
42 26 0.16
ACGTcount: A:0.43, C:0.01, G:0.08, T:0.49
Consensus pattern (34 bp):
ATAATTAAATAATTAAATATTTGGGTTATTTTTA
Found at i:24004717 original size:4 final size:4
Alignment explanation
Indices: 24004696--24004728 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
24004686 TGGGTTATTT
*
24004696 TTAA -TAA TTAA ATAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
24004729 GGGTTGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
TTAA
Found at i:24004793 original size:12 final size:12
Alignment explanation
Indices: 24004776--24004822 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
24004766 TTGTTTTTAA
24004776 TAATTAAATATT
1 TAATTAAATATT
*
24004788 TAATTAAATAAT
1 TAATTAAATATT
* *
24004800 TAA--ATATTTT
1 TAATTAAATATT
24004810 TAATTAAATATT
1 TAATTAAATATT
24004822 T
1 T
24004823 GGAATATTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
10 7 0.26
12 20 0.74
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
TAATTAAATATT
Found at i:24004815 original size:14 final size:14
Alignment explanation
Indices: 24004796--24004822 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24004786 TTTAATTAAA
24004796 TAATTAAATATTTT
1 TAATTAAATATTTT
24004810 TAATTAAATATTT
1 TAATTAAATATTT
24004823 GGAATATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TAATTAAATATTTT
Found at i:24004817 original size:76 final size:77
Alignment explanation
Indices: 24004656--24004819 Score: 208
Period size: 76 Copynumber: 2.1 Consensus size: 77
24004646 TTTAATTAAA
* *
24004656 TAATTAAATATAATTAAATAATTAAATATTTGGGTTATTTTTAATAATTAAATAATTAATTAATT
1 TAATT-AA-ATAATTAAATAATTAAATATTTAGGTTATTTTTAATAATTAAATAATTAATTAAAT
* *
24004721 AATTAATTGGGTTGT
64 AATTAAAT-GATTGT
* * *
24004736 T--TTAAATAATTAAATAATTAAGTATTTAGGTTGTTTTTAATAATTAAATATTTAATTAAATAA
1 TAATTAAATAATTAAATAATTAAATATTTAGGTTATTTTTAATAATTAAATAATTAATTAAATAA
*
24004799 TTAAAT-ATTTT
66 TTAAATGATTGT
24004810 TAATTAAATA
1 TAATTAAATA
24004820 TTTGGAATAT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
74 4 0.05
76 65 0.88
77 2 0.03
78 2 0.03
80 1 0.01
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (77 bp):
TAATTAAATAATTAAATAATTAAATATTTAGGTTATTTTTAATAATTAAATAATTAATTAAATAA
TTAAATGATTGT
Found at i:24004832 original size:22 final size:21
Alignment explanation
Indices: 24004774--24004846 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 21
24004764 GGTTGTTTTT
24004774 AATAATTAAATA-TTTAATTA
1 AATAATTAAATATTTTAATTA
24004794 AATAATTAAATATTTTTAATTA
1 AATAATTAAATA-TTTTAATTA
* *
24004816 AATATTTGGAATATTTTTAA-TA
1 AATAATT-AAATA-TTTTAATTA
*
24004838 ATTAATTAA
1 AATAATTAA
24004847 TTAATCAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
20 12 0.27
21 1 0.02
22 21 0.47
23 11 0.24
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (21 bp):
AATAATTAAATATTTTAATTA
Found at i:24004880 original size:140 final size:130
Alignment explanation
Indices: 24004618--24004935 Score: 363
Period size: 140 Copynumber: 2.4 Consensus size: 130
24004608 TCATCAAAAT
*
24004618 TATTTGGGTTGTTTTTAATAATTAAATATTTAATTAAATAATTAAATATAATTAAATAATTAAAT
1 TATTTAGGTTGTTTTTAATAATTAAATATTTAATTAAATAATTAAATAT-ATT-AATAATTAAAT
** * ** *
24004683 ATTTGGGTTATTTTTAATAATTAAATAATTAATTAATTAATTAATTGGGTTGTTTTAAATAATTA
64 ATTTGGAATATTTTTAATAATTAAATAATTAATCAATTAATTAATTACGTTATTTTAAATAA-T-
24004748 AATAATTAA
127 --T-A--AA
*
24004757 GTATTTAGGTTGTTTTTAATAATTAAATATTTAATTAAATAATTAAATAT-TT-TTAATTAAATA
1 -TATTTAGGTTGTTTTTAATAATTAAATATTTAATTAAATAATTAAATATATTAATAATTAAATA
* ** *
24004820 TTTGGAATATTTTTAATAATTAATTAATTAATCAATTAATTGGGTTACTTTAAATATTTAAATAA
65 TTTGGAATATTTTTAATAATTAAATAATTAATCAATTAATT-AATTACGTT--AT-TTTAAATAA
24004885 TTAAA
126 TTAAA
*
24004890 TATTTAGGTTGTTTTTAATAATTAAATA-TTATTTATAATAATTAAA
1 TATTTAGGTTGTTTTTAATAATTAAATATTTAATTA-AATAATTAAA
24004936 ATGTAATTTT
Statistics
Matches: 160, Mismatches: 13, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
131 6 0.04
132 38 0.24
133 2 0.01
135 1 0.01
136 48 0.30
137 4 0.03
138 2 0.01
139 2 0.01
140 57 0.36
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (130 bp):
TATTTAGGTTGTTTTTAATAATTAAATATTTAATTAAATAATTAAATATATTAATAATTAAATAT
TTGGAATATTTTTAATAATTAAATAATTAATCAATTAATTAATTACGTTATTTTAAATAATTAAA
Found at i:24004894 original size:132 final size:136
Alignment explanation
Indices: 24004618--24004935 Score: 466
Period size: 132 Copynumber: 2.3 Consensus size: 136
24004608 TCATCAAAAT
*
24004618 TATTTGGGTTGTTTTTAATAATTAAATATTTAATTAAATAATTAAATATAATTAAATAATTAAAT
1 TATTTAGGTTGTTTTTAATAATTAAATATTTAATTAAATAATTAAATAT-ATT-AATAATTAAAT
** * **
24004683 ATTTGGGTTATTTTTAATAATTAAATAATTAATTAATTAATTAATTGGGTTGTTTTAAATAATTA
64 ATTTGGAATATTTTTAATAATT--ATAATTAATTAATCAATTAATTGGGTTACTTTAAATAATTA
*
24004748 AATAATTAAG
127 AATAATTAAA
*
24004758 TATTTAGGTTGTTTTTAATAATTAAATATTTAATTAAATAATTAAATAT-TT-TTAATTAAATAT
1 TATTTAGGTTGTTTTTAATAATTAAATATTTAATTAAATAATTAAATATATTAATAATTAAATAT
*
24004821 TTGGAATATTTTTAATAA-T-TAATTAATTAATCAATTAATTGGGTTACTTTAAATATTTAAATA
66 TTGGAATATTTTTAATAATTATAATTAATTAATCAATTAATTGGGTTACTTTAAATAATTAAATA
24004884 ATTAAA
131 ATTAAA
*
24004890 TATTTAGGTTGTTTTTAATAATTAAATA-TTATTTATAATAATTAAA
1 TATTTAGGTTGTTTTTAATAATTAAATATTTAATTA-AATAATTAAA
24004936 ATGTAATTTT
Statistics
Matches: 167, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
131 6 0.04
132 83 0.50
135 1 0.01
136 27 0.16
138 2 0.01
140 48 0.29
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (136 bp):
TATTTAGGTTGTTTTTAATAATTAAATATTTAATTAAATAATTAAATATATTAATAATTAAATAT
TTGGAATATTTTTAATAATTATAATTAATTAATCAATTAATTGGGTTACTTTAAATAATTAAATA
ATTAAA
Found at i:24008185 original size:12 final size:12
Alignment explanation
Indices: 24008168--24008210 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
24008158 TATGTATACC
24008168 ATAATATGTGAT
1 ATAATATGTGAT
*
24008180 ATAATACT-TCATT
1 ATAATA-TGTGA-T
24008193 ATAATATGTGAT
1 ATAATATGTGAT
24008205 ATAATA
1 ATAATA
24008211 CTTCATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (12 bp):
ATAATATGTGAT
Found at i:24008196 original size:25 final size:25
Alignment explanation
Indices: 24008168--24008217 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
24008158 TATGTATACC
24008168 ATAATATGTGATATAATACTTCATT
1 ATAATATGTGATATAATACTTCATT
24008193 ATAATATGTGATATAATACTTCATT
1 ATAATATGTGATATAATACTTCATT
24008218 TAAATCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (25 bp):
ATAATATGTGATATAATACTTCATT
Found at i:24010010 original size:41 final size:41
Alignment explanation
Indices: 24009942--24010312 Score: 413
Period size: 41 Copynumber: 9.0 Consensus size: 41
24009932 TAGCGGCATT
* ** * *
24009942 TTTCACATAAGCGCCGCTATTTCTCTGACCTTTAACAGCGC
1 TTTCCCATAAGCGCCGCTATTGATCTGACCTTTAGCGGCGC
* * *
24009983 TTTCCTATAAGTGCCGCTATTGATCTGACCTTTAGCGGTGC
1 TTTCCCATAAGCGCCGCTATTGATCTGACCTTTAGCGGCGC
* * ** *
24010024 TTGCCCATAAGCACCGCTATTTCTTTGACCTTTAGCGGCGC
1 TTTCCCATAAGCGCCGCTATTGATCTGACCTTTAGCGGCGC
** ** * *
24010065 TTAT-GGATAAGCGTTGCTATTGATCAGACCTTTAGTGGCGC
1 TT-TCCCATAAGCGCCGCTATTGATCTGACCTTTAGCGGCGC
*
24010106 TTTCCCATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGC
1 TTTCCCATAAGCGCCGCTATTGATCTGACCTTTAGCGGCGC
*
24010147 TTAT-CCATAAGCACCGCTATTGATCTGACCTTTAGCGGCGC
1 TT-TCCCATAAGCGCCGCTATTGATCTGACCTTTAGCGGCGC
* * * *
24010188 TTGCCCATAAGCGCCGCTATTGATATGACCTTTAGCAGCAC
1 TTTCCCATAAGCGCCGCTATTGATCTGACCTTTAGCGGCGC
* * *
24010229 TTTCCCATAAGCGTCGCTATTGCTCTGACCTTTAGTGGCGC
1 TTTCCCATAAGCGCCGCTATTGATCTGACCTTTAGCGGCGC
*** * *
24010270 TTAATCATAAGCGCCGCTATTGATCTCACCTTTAACGGCGC
1 TTTCCCATAAGCGCCGCTATTGATCTGACCTTTAGCGGCGC
24010311 TT
1 TT
24010313 GCCATAGCGA
Statistics
Matches: 270, Mismatches: 56, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
40 1 0.00
41 268 0.99
42 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.32
Consensus pattern (41 bp):
TTTCCCATAAGCGCCGCTATTGATCTGACCTTTAGCGGCGC
Found at i:24010167 original size:123 final size:123
Alignment explanation
Indices: 24009947--24010312 Score: 457
Period size: 123 Copynumber: 3.0 Consensus size: 123
24009937 GCATTTTTCA
** * * * * *
24009947 CATAAGCGCCGCTATTTCTCTGACCTTTAACAGCGCTTTCCTATAAGTGCCGCTATTGATCTGAC
1 CATAAGCGCCGCTATTGATATGACCTTTAGCAGCGCTTTCCCATAAGCGCCGCTATTGCTCTGAC
* ** ** * **
24010012 CTTTAGCGGTGCTTGCCCATAAGCACCGCTATTTCTTTGACCTTTAGCGGCGCTTATG
66 CTTTAGCGGCGCTTATCCATAAGCACCGCTATTGATCTGACCTTTAGCGGCGCTTACC
* ** **
24010070 GATAAGCGTTGCTATTGATCA-GACCTTTAGTGGCGCTTTCCCATAAGCGCCGCTATTGCTCTGA
1 CATAAGCGCCGCTATTGAT-ATGACCTTTAGCAGCGCTTTCCCATAAGCGCCGCTATTGCTCTGA
*
24010134 CCTTTAGCGGCGCTTATCCATAAGCACCGCTATTGATCTGACCTTTAGCGGCGCTTGCC
65 CCTTTAGCGGCGCTTATCCATAAGCACCGCTATTGATCTGACCTTTAGCGGCGCTTACC
* *
24010193 CATAAGCGCCGCTATTGATATGACCTTTAGCAGCACTTTCCCATAAGCGTCGCTATTGCTCTGAC
1 CATAAGCGCCGCTATTGATATGACCTTTAGCAGCGCTTTCCCATAAGCGCCGCTATTGCTCTGAC
* * * *
24010258 CTTTAGTGGCGCTTAAT-CATAAGCGCCGCTATTGATCTCACCTTTAACGGCGCTT
66 CTTTAGCGGCGCTT-ATCCATAAGCACCGCTATTGATCTGACCTTTAGCGGCGCTT
24010313 GCCATAGCGA
Statistics
Matches: 208, Mismatches: 32, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
122 1 0.00
123 205 0.99
124 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.31
Consensus pattern (123 bp):
CATAAGCGCCGCTATTGATATGACCTTTAGCAGCGCTTTCCCATAAGCGCCGCTATTGCTCTGAC
CTTTAGCGGCGCTTATCCATAAGCACCGCTATTGATCTGACCTTTAGCGGCGCTTACC
Found at i:24010419 original size:40 final size:40
Alignment explanation
Indices: 24010323--24010437 Score: 126
Period size: 40 Copynumber: 2.9 Consensus size: 40
24010313 GCCATAGCGA
* * * *
24010323 CGCTTTCCAATAAGTC-CCGCTATTGCTCTGACATTTAGCGG
1 CGCTTTCCCATAAG-CGCCGCTATTGCTCTTAC-CTTAGAGG
24010364 CGCTTTCCCATAAGCGCCGCTATTGCTCTTACCTTAGAGG
1 CGCTTTCCCATAAGCGCCGCTATTGCTCTTACCTTAGAGG
* * * *
24010404 TGTTTTCCCATAAGCGTCGCTATTGTTC-TACCTT
1 CGCTTTCCCATAAGCGCCGCTATTGCTCTTACCTT
24010438 TTGCGACGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
39 6 0.09
40 31 0.48
41 28 0.43
ACGTcount: A:0.17, C:0.30, G:0.18, T:0.35
Consensus pattern (40 bp):
CGCTTTCCCATAAGCGCCGCTATTGCTCTTACCTTAGAGG
Found at i:24015850 original size:2 final size:2
Alignment explanation
Indices: 24015843--24015889 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
24015833 TAATGTTTCT
24015843 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24015885 TA TA T
1 TA TA T
24015890 GTTGTAAATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24020128 original size:16 final size:15
Alignment explanation
Indices: 24020104--24020137 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
24020094 TGTTAGTTCT
*
24020104 TTATTATTTATTTTA
1 TTATTATTTATGTTA
24020119 TTATTCATTTATGTTA
1 TTATT-ATTTATGTTA
24020135 TTA
1 TTA
24020138 ATTTGAATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (15 bp):
TTATTATTTATGTTA
Found at i:24022196 original size:21 final size:23
Alignment explanation
Indices: 24022172--24022217 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
24022162 CTACATTTAT
* *
24022172 AAATGGTGTTTTGA-AGA-AGAA
1 AAATAGTGTTTGGATAGAGAGAA
24022193 AAATAGTGTTTGGATAGAGAGAA
1 AAATAGTGTTTGGATAGAGAGAA
24022216 AA
1 AA
24022218 TGAGAGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 12 0.57
22 3 0.14
23 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.28, T:0.26
Consensus pattern (23 bp):
AAATAGTGTTTGGATAGAGAGAA
Found at i:24024472 original size:21 final size:22
Alignment explanation
Indices: 24024448--24024489 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
24024438 AATCAAAAAG
24024448 AAAAGAAAAATGAGT-AGAAAC
1 AAAAGAAAAATGAGTAAGAAAC
**
24024469 AAAAGAATCATGAGTAAGAAA
1 AAAAGAAAAATGAGTAAGAAA
24024490 ACGTGTGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.64, C:0.05, G:0.19, T:0.12
Consensus pattern (22 bp):
AAAAGAAAAATGAGTAAGAAAC
Found at i:24050111 original size:15 final size:14
Alignment explanation
Indices: 24050052--24050113 Score: 54
Period size: 14 Copynumber: 4.2 Consensus size: 14
24050042 AATAAAAGTA
*
24050052 AAATAAATGGTAAGAT
1 AAATAAAT-G-AAAAT
24050068 AAATAAAT-AATAAT
1 AAATAAATGAA-AAT
**
24050082 AAATAAATGTGAAT
1 AAATAAATGAAAAT
24050096 ATAATAAATGAAAAT
1 A-AATAAATGAAAAT
24050111 AAA
1 AAA
24050114 AAAGTTAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
13 2 0.05
14 16 0.42
15 12 0.32
16 8 0.21
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.26
Consensus pattern (14 bp):
AAATAAATGAAAAT
Found at i:24051372 original size:21 final size:21
Alignment explanation
Indices: 24051346--24051390 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
24051336 GTAAATGGAC
*
24051346 TTTTTAATGGATTTTAATTTA
1 TTTTTAATGGACTTTAATTTA
*
24051367 TTTTTATTGGACTTTAATTTA
1 TTTTTAATGGACTTTAATTTA
24051388 TTT
1 TTT
24051391 ATAAAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.02, G:0.09, T:0.64
Consensus pattern (21 bp):
TTTTTAATGGACTTTAATTTA
Found at i:24053146 original size:7 final size:7
Alignment explanation
Indices: 24053136--24053170 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
24053126 TTTTTTTCCT
24053136 TTTTTTG
1 TTTTTTG
24053143 TTTTTTG
1 TTTTTTG
24053150 TTTTTTG
1 TTTTTTG
24053157 TTTTCTTTG
1 -TTT-TTTG
24053166 TTTTT
1 TTTTT
24053171 ATTTTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 16 0.62
8 6 0.23
9 4 0.15
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (7 bp):
TTTTTTG
Found at i:24053148 original size:10 final size:10
Alignment explanation
Indices: 24053135--24053201 Score: 55
Period size: 10 Copynumber: 6.7 Consensus size: 10
24053125 TTTTTTTTCC
*
24053135 TTTTTTTGTT
1 TTTTTTTATT
*
24053145 TTTTGTT-TT
1 TTTTTTTATT
* *
24053154 TTGTTTTCTT
1 TTTTTTTATT
*
24053164 TGTTTTTATT
1 TTTTTTTATT
*
24053174 TTATTTTATT
1 TTTTTTTATT
*
24053184 TTATTTTATT
1 TTTTTTTATT
24053194 TTCTTTTT
1 TT-TTTTT
24053202 GAAACACTTC
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
9 7 0.15
10 35 0.76
11 4 0.09
ACGTcount: A:0.07, C:0.03, G:0.06, T:0.84
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:24053153 original size:23 final size:23
Alignment explanation
Indices: 24053127--24053170 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
24053117 TCTCTCCTTT
24053127 TTTTTTCCTTTT-TTTGTTTTTTG
1 TTTTTT-CTTTTCTTTGTTTTTTG
*
24053150 TTTTTTGTTTTCTTTGTTTTT
1 TTTTTTCTTTTCTTTGTTTTT
24053171 ATTTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.00, C:0.07, G:0.09, T:0.84
Consensus pattern (23 bp):
TTTTTTCTTTTCTTTGTTTTTTG
Found at i:24053175 original size:15 final size:15
Alignment explanation
Indices: 24053146--24053194 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
24053136 TTTTTTGTTT
* *
24053146 TTTGTTTTTTGTTTTC
1 TTTG-TTTTTATTTTA
24053162 TTTGTTTTTATTTTA
1 TTTGTTTTTATTTTA
24053177 TTT-TATTTTATTTTA
1 TTTGT-TTTTATTTTA
24053192 TTT
1 TTT
24053195 TCTTTTTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
14 1 0.03
15 25 0.83
16 4 0.13
ACGTcount: A:0.10, C:0.02, G:0.06, T:0.82
Consensus pattern (15 bp):
TTTGTTTTTATTTTA
Found at i:24053195 original size:15 final size:15
Alignment explanation
Indices: 24053167--24053200 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
24053157 TTTTCTTTGT
24053167 TTTTATTTTATTTTA
1 TTTTATTTTATTTTA
*
24053182 TTTTATTTTATTTTC
1 TTTTATTTTATTTTA
24053197 TTTT
1 TTTT
24053201 TGAAACACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTATTTTATTTTA
Found at i:24060514 original size:19 final size:20
Alignment explanation
Indices: 24060473--24060514 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
24060463 TATATACTAC
*
24060473 ACAATAAAATAAAATAAACA
1 ACAATAAAATAAAATAAAAA
24060493 ACAAT-AAAT-AAATAAATAA
1 ACAATAAAATAAAATAAA-AA
24060512 ACA
1 ACA
24060515 TTGAATCGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 7 0.35
19 8 0.40
20 5 0.25
ACGTcount: A:0.74, C:0.10, G:0.00, T:0.17
Consensus pattern (20 bp):
ACAATAAAATAAAATAAAAA
Found at i:24060579 original size:9 final size:8
Alignment explanation
Indices: 24060552--24060586 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
24060542 ATAAATTAAC
24060552 AAAATAAA
1 AAAATAAA
* *
24060560 TAAGTAAA
1 AAAATAAA
24060568 AAAATAAA
1 AAAATAAA
24060576 AAAATAAA
1 AAAATAAA
24060584 AAA
1 AAA
24060587 GGCAAATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (8 bp):
AAAATAAA
Found at i:24061847 original size:21 final size:21
Alignment explanation
Indices: 24061821--24061865 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
24061811 GTAAATGGAC
* *
24061821 TTTTTAATGGATTTTTATTTA
1 TTTTTAATGGACTTTAATTTA
*
24061842 TTTTTATTGGACTTTAATTTA
1 TTTTTAATGGACTTTAATTTA
24061863 TTT
1 TTT
24061866 ATAAAAATGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.02, G:0.09, T:0.67
Consensus pattern (21 bp):
TTTTTAATGGACTTTAATTTA
Found at i:24069021 original size:501 final size:504
Alignment explanation
Indices: 24068014--24068995 Score: 1575
Period size: 501 Copynumber: 2.0 Consensus size: 504
24068004 CAGTTCCGTG
* *
24068014 GTCAAAACAATCAAAATCAAAGAATTAACAGTAAAAGCAAGTTTGAATAAGATATTATTTAGTCT
1 GTCAAAACAATCAAAATCAAAGAATTAACAGTAAAAGCAAGATTGAATAAGATATCATTTAGTCT
*
24068079 AAAAATCAAGAGTACTTCCATACAAACTGAAAATGAAACATTAATCACCAGCGTTTAAGAAAGAA
66 -AAAATCAAGAGTACTTCCATACAAACTGAAAATGAAACATTAATCACCAGCATTTAAGAAAGAA
24068144 ATATAAAAGAACAATTGAAGAATACTATTCCTAGGCTACTCGACTTGCTCCCTTACTTCCCTCTT
130 ATATAAAAGAACAATTGAAGAATACTATTCCTAGGCTACTCGACTTGCTCCCTTACTTCCCTCTT
* ** *
24068209 ACATTGCACTTAGGGCTCCTTGTCAGGAGCAGATCTGCATCCCTTCATGTTGGTTCACCCATGTA
195 ACATCGCACTTAGGGCTCCTCATCAGGAGCAGATCTGCATCCCTTCACGTTGGTTCACCCATGTA
* * *
24068274 GGCCTTAAGCCCCCTAGCCTAAAAGCTTCAAAAGCTTGGTTGAAGAAGAAAATGCACCAAAGGAG
260 GGCCTCAAGCCCCCTAACCGAAAAGCTTCAAAAGCTTGGTTGAAGAAGAAAATGCACCAAAGGAG
**
24068339 ACAAAGGAGAGAGAGAGAGAGAGCTTTTCTCTTTCCTTGTGAGTATTTATATCCCTTTAAATTGT
325 ACAAAGGAGAGAGAGAGAGAGAGCTTTTCTCTTTCCTTGTGAGTATTTATATCCCTCCAAATTGT
* * * * *
24068404 ACAGGTGTCATTTTTGCAGAATTGAGCTGTCTATGGTCATACCAGTTGATTATACCAAACTGGAT
390 ACAGGTATCATTTTTGCAGAATTGAGCTATATATGGTCATACCAGTTGACTATACCAAACTGGAC
* *
24068469 AGCTTATCCAATTTCTGTTCTTATCCAAACAACTAATAGGTGCAACGATA
455 AGCTTATACAATTTCTGTTCGTATCCAAACAACTAATAGGTGCAACGATA
24068519 GTCAAAACAATCAAAATCAAAGAATTAACAGTAAAA-CTAAGATTGAATAAGATATCATTTAGTC
1 GTCAAAACAATCAAAATCAAAGAATTAACAGTAAAAGC-AAGATTGAATAAGATATCATTTAGTC
24068583 T-AAATCAAGAGTACTTCCATACAAACTCG-AAATG-AACATTAATCACCAGCATTTAAGAAA-A
65 TAAAATCAAGAGTACTTCCATACAAACT-GAAAATGAAACATTAATCACCAGCATTTAAGAAAGA
24068644 AATATAAAAGAACAATTGAAGAATACTATTCCTAGGCTACTCGACTTGCTCCCTTACTTCCCTCT
129 AATATAAAAGAACAATTGAAGAATACTATTCCTAGGCTACTCGACTTGCTCCCTTACTTCCCTCT
* * *
24068709 TGCGTCGCACTTAGGGCTCCTCATCAGGAGTAGATCTGCATCCCTTCACGTTGGTTCACCCATGT
194 TACATCGCACTTAGGGCTCCTCATCAGGAGCAGATCTGCATCCCTTCACGTTGGTTCACCCATGT
* * * *
24068774 GGGTCTCAAGCCTCTTAACCGAAAAGCTTCAAAAGCTTGGTTGAA-AA-AAATATGCACCAAAGG
259 AGGCCTCAAGCCCCCTAACCGAAAAGCTTCAAAAGCTTGGTTGAAGAAGAAA-ATGCACCAAAGG
24068837 AGACTAAAGGAGAGAGAGAGAGAGAGCTTTTCTCTTTCCTTGTGAGTATTTATATCCCTCCAAAT
323 AGAC-AAAGGAGAGAGAGAGAGAGAGCTTTTCTCTTTCCTTGTGAGTATTTATATCCCTCCAAAT
* * *
24068902 TGTACAGGTATC-TTTTCTGCAGAATTGAGCTATATATGGTCGTACCAGTTGGCTATACCAGACT
387 TGTACAGGTATCATTTT-TGCAGAATTGAGCTATATATGGTCATACCAGTTGACTATACCAAACT
* *
24068966 GGGCAGCTTATACAATTTTTGTTCGTATCC
451 GGACAGCTTATACAATTTCTGTTCGTATCC
24068996 GGATAGCTAT
Statistics
Matches: 441, Mismatches: 31, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
499 3 0.01
500 22 0.05
501 297 0.67
502 25 0.06
503 31 0.07
504 2 0.00
505 61 0.14
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (504 bp):
GTCAAAACAATCAAAATCAAAGAATTAACAGTAAAAGCAAGATTGAATAAGATATCATTTAGTCT
AAAATCAAGAGTACTTCCATACAAACTGAAAATGAAACATTAATCACCAGCATTTAAGAAAGAAA
TATAAAAGAACAATTGAAGAATACTATTCCTAGGCTACTCGACTTGCTCCCTTACTTCCCTCTTA
CATCGCACTTAGGGCTCCTCATCAGGAGCAGATCTGCATCCCTTCACGTTGGTTCACCCATGTAG
GCCTCAAGCCCCCTAACCGAAAAGCTTCAAAAGCTTGGTTGAAGAAGAAAATGCACCAAAGGAGA
CAAAGGAGAGAGAGAGAGAGAGCTTTTCTCTTTCCTTGTGAGTATTTATATCCCTCCAAATTGTA
CAGGTATCATTTTTGCAGAATTGAGCTATATATGGTCATACCAGTTGACTATACCAAACTGGACA
GCTTATACAATTTCTGTTCGTATCCAAACAACTAATAGGTGCAACGATA
Found at i:24081781 original size:14 final size:14
Alignment explanation
Indices: 24081759--24081791 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
24081749 AATTAAATGT
24081759 TAAAATAATTAAAA
1 TAAAATAATTAAAA
*
24081773 TAAAGTAATTAAAA
1 TAAAATAATTAAAA
24081787 -AAAAT
1 TAAAAT
24081792 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (14 bp):
TAAAATAATTAAAA
Found at i:24083132 original size:13 final size:13
Alignment explanation
Indices: 24083114--24083142 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
24083104 TAAATGTGAT
24083114 ATTGGTTGATATG
1 ATTGGTTGATATG
24083127 ATTGGTTGATATG
1 ATTGGTTGATATG
24083140 ATT
1 ATT
24083143 TATATTCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (13 bp):
ATTGGTTGATATG
Found at i:24097271 original size:18 final size:18
Alignment explanation
Indices: 24097245--24097296 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
24097235 ACGCAATTTG
*
24097245 ATCAAATGCAATCACAGA
1 ATCAGATGCAATCACAGA
* * *
24097263 ATCAGATGCAGTCGCATA
1 ATCAGATGCAATCACAGA
* *
24097281 CTCAGATGCAACCACA
1 ATCAGATGCAATCACA
24097297 ACAAACTGTG
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.40, C:0.27, G:0.15, T:0.17
Consensus pattern (18 bp):
ATCAGATGCAATCACAGA
Found at i:24099169 original size:14 final size:15
Alignment explanation
Indices: 24099150--24099179 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
24099140 TCGATGTTTT
24099150 ACTGTTCA-TTTATC
1 ACTGTTCATTTTATC
24099164 ACTGTTCATTTTATC
1 ACTGTTCATTTTATC
24099179 A
1 A
24099180 TTATATTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.23, C:0.20, G:0.07, T:0.50
Consensus pattern (15 bp):
ACTGTTCATTTTATC
Found at i:24100203 original size:52 final size:52
Alignment explanation
Indices: 24100120--24100357 Score: 350
Period size: 52 Copynumber: 4.6 Consensus size: 52
24100110 ATTTTATTTA
* * * * *
24100120 ATACTCACGATGGCACATAGTCATCGAACCTCTTATTCCGTAAAGGAATCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * *
24100172 ACACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAGGATTCGT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
24100224 ATACTCACGATGACACATAGTCATTGGACCTCATAATCTGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
24100276 ATACTCATGATGACACATAGTCATCGGGCCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
24100328 ATACTCACGATGACACATAGTTATTGGACC
1 ATACTCACGATGACACATAGTCATCGGACC
24100358 CTTTTTGCAT
Statistics
Matches: 165, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 165 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:24108069 original size:22 final size:22
Alignment explanation
Indices: 24108042--24108085 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
24108032 ATGTTGGTCC
**
24108042 TATGCAAGTGGCCCAACAGATT
1 TATGCAAGTCACCCAACAGATT
24108064 TATGCAAGTCACCCAACAGATT
1 TATGCAAGTCACCCAACAGATT
24108086 GATGTACCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (22 bp):
TATGCAAGTCACCCAACAGATT
Found at i:24115771 original size:21 final size:21
Alignment explanation
Indices: 24115723--24115776 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
24115713 CCTATGCTAG
*
24115723 TTCTACCGATACAAGTATAAT
1 TTCTACCGATACAAGTATAAC
* *
24115744 TTTTACCAATACAAGTCAT-AC
1 TTCTACCGATACAAGT-ATAAC
24115765 TTCTACCGATAC
1 TTCTACCGATAC
24115777 TAAAAACTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (21 bp):
TTCTACCGATACAAGTATAAC
Found at i:24116637 original size:52 final size:52
Alignment explanation
Indices: 24116491--24116873 Score: 482
Period size: 52 Copynumber: 7.4 Consensus size: 52
24116481 ATTTCATTTA
* ** ** * * *
24116491 ATACTCACGATGACACATAGTCATCAGACCTGTTGTTTCGTAAAGGAATCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCATAAAGGATTCAT
* * * *
24116543 ACACTCATGATGACAC--AGTCATCGGACCTCATAATCCGTAAAGGATTCGT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCATAAAGGATTCAT
* * ** ** * * *
24116593 ATACTCATGATGACACATAGTCATCGAACCTTTTGTTTCGTAAAGGAATCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCATAAAGGATTCAT
* * * *
24116645 ACACTCATGATGACACATAGTTATCGGACCTCATAATCCATAAAGGATTCGT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCATAAAGGATTCAT
*
24116697 ATACTCACAATGACACATAGTCATCGGACCTCATAATCCATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCATAAAGGATTCAT
*
24116749 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCATAAATGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCATAAAGGATTCAT
* * *
24116801 ATATTCACGATGACACATAATCATCGAACCTCATAATCCATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCATAAAGGATTCAT
24116853 ATACTCACGATGACACATAGT
1 ATACTCACGATGACACATAGT
24116874 TATTAGACCC
Statistics
Matches: 286, Mismatches: 43, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
50 41 0.14
52 245 0.86
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCATAAAGGATTCAT
Found at i:24116703 original size:26 final size:26
Alignment explanation
Indices: 24116674--24116755 Score: 60
Period size: 26 Copynumber: 3.2 Consensus size: 26
24116664 GTTATCGGAC
24116674 CTCATAATCCATAAAGGATTCGTATA
1 CTCATAATCCATAAAGGATTCGTATA
* * * * * * *
24116700 CTCACAATGACACATAGTCA-TCGGA-C
1 CTCATAAT-CCATAAAG-GATTCGTATA
*
24116726 CTCATAATCCATAAAGGATTCATATA
1 CTCATAATCCATAAAGGATTCGTATA
24116752 CTCA
1 CTCA
24116756 CGATGACACA
Statistics
Matches: 37, Mismatches: 15, Indels: 8
0.62 0.25 0.13
Matches are distributed among these distances:
24 1 0.03
25 8 0.22
26 18 0.49
27 9 0.24
28 1 0.03
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (26 bp):
CTCATAATCCATAAAGGATTCGTATA
Found at i:24122609 original size:13 final size:13
Alignment explanation
Indices: 24122591--24122615 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24122581 AGGCGCAAAT
24122591 GAAAAGCAAAGAA
1 GAAAAGCAAAGAA
24122604 GAAAAGCAAAGA
1 GAAAAGCAAAGA
24122616 GGAGCACCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.24, T:0.00
Consensus pattern (13 bp):
GAAAAGCAAAGAA
Found at i:24124806 original size:24 final size:24
Alignment explanation
Indices: 24124779--24124833 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
24124769 ACAATCAATT
24124779 CATTTTATATTACATTTGCACTGA
1 CATTTTATATTACATTTGCACTGA
* *
24124803 CATTTTATATTACTTTTGCATTGA
1 CATTTTATATTACATTTGCACTGA
24124827 CAATTTT
1 C-ATTTT
24124834 TACTCTTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.27, C:0.15, G:0.07, T:0.51
Consensus pattern (24 bp):
CATTTTATATTACATTTGCACTGA
Found at i:24171379 original size:18 final size:18
Alignment explanation
Indices: 24171333--24171381 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
24171323 CACATAGTCA
**
24171333 ATTGCAACCACAATCGCG
1 ATTGCAACCACAATCAAG
* *
24171351 ATTACAGCCACAATCAAG
1 ATTGCAACCACAATCAAG
*
24171369 CTTGCAACCACAA
1 ATTGCAACCACAA
24171382 ATGCAAGGAC
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.33, G:0.12, T:0.16
Consensus pattern (18 bp):
ATTGCAACCACAATCAAG
Found at i:24184307 original size:137 final size:136
Alignment explanation
Indices: 24184060--24184752 Score: 928
Period size: 137 Copynumber: 5.0 Consensus size: 136
24184050 GAGAACATAG
*
24184060 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTTTATATATTTTACAAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAA-TTT-TATATTTTACAGAATTTATT
* * *
24184125 AATATAAAAAATTATATTAATTAATTTCGGCCAAAATATAAAAGACATGGAAATTAATATTCTTT
64 AATATAAACAATTATATTAATAAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
*
24184190 TAGAAAGA
129 TGGAAAGA
* * * *
24184198 ATATAACTAATATATGAATTTGATTCGTACAAAATATTAATTTTATATGTTTACCGAATTTATTT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTTTATAT-TTTACAGAATTTATTA
* * * *
24184263 GTATAAACAATTATATTAATAAAGTTCGGTCAAAATATAAAAGACATGAAAACTAATATTCTTTT
65 ATATAAACAATTATATTAATAAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
24184328 GGAAAGA
130 GGAAAGA
* *
24184335 ATATAACTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATT-T-TATATTTTACAGAATTTATT
* * * * *
24184400 AAT-TTAACTATTTATATTAATAAATTT-TGTAAAAATATAAAATACATGGAAATTAATATTC-T
64 AATATAAAC-AATTATATTAATAAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTT
24184462 TTGGAAAAGA
128 TTGG-AAAGA
*
24184472 ATATAATTAATATATGAATTTGATTCATATAAAATATTAATTGTATATATTTTACAGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATT-T-TATATTTTACAGAATTTATT
* * *
24184537 AATAT-AACAAGTTATATTAACT-AATTTTGGTCAAAATATATATGACATGGAAATTAATATTCT
64 AATATAAACAA-TTATATTAA-TAAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCT
24184600 TTTGGAAAGA
127 TTTGGAAAGA
* * *
24184610 ATATAATTAATATATGAATTTTATTCATACAAAATATTAATTGTATATATCTTACTGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATT-T-TATATTTTACAGAATTTATT
* * * * * *
24184675 AACATAAACAGTTATATTAATTAATTTCGGTTAAAATATAAAAGACATGAAAATTAATATTGTTT
64 AATATAAACAATTATATTAATAAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
*
24184740 TGGAAAAA
129 TGGAAAGA
24184748 ATATA
1 ATATA
24184753 CTTTTTCCTA
Statistics
Matches: 497, Mismatches: 46, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
136 11 0.02
137 242 0.49
138 230 0.46
139 14 0.03
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.40
Consensus pattern (136 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTTTATATTTTACAGAATTTATTAA
TATAAACAATTATATTAATAAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTG
GAAAGA
Found at i:24184571 original size:275 final size:274
Alignment explanation
Indices: 24184060--24184752 Score: 957
Period size: 275 Copynumber: 2.5 Consensus size: 274
24184050 GAGAACATAG
* *
24184060 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTTTATATATTTTACAAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATT
* * **
24184125 AATATAAAAAATTATATTAATTAATTTCGGCCAAAATATAAAAGACATGGAAATTAATATTCTTT
66 AAT-TTAACAATTATATTAATTAATTTCGGTAAAAATATAAAAGACATGGAAATTAATATTCTTT
* * *
24184190 -TAGAAAGAATATAACTAATATATGAATTTGATTCGTACAAAATATTAATTTTATATGTTTACCG
130 GGA-AAAGAATATAACTAATATATGAATTTGATTCATACAAAATATTAATTTTATATGTTTACAG
**
24184254 AATTTATTTGTATAAACAATTATATTAATAAAGTTCGGTCAAAATATAAAAGACATGAAAACTAA
194 AATTTATTAATATAAACAATTATATTAATAAAGTTCGGTCAAAATATAAAAGACATGAAAACTAA
24184319 TATTCTTTTGGAAAGA
259 TATTCTTTTGGAAAGA
* *
24184335 ATATAACTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATT
* * * *
24184400 AATTTAACTATTTATATTAATAAATTT-TGTAAAAATATAAAATACATGGAAATTAATATTCTTT
66 AATTTAAC-AATTATATTAATTAATTTCGGTAAAAATATAAAAGACATGGAAATTAATATTCTTT
* *
24184464 GGAAAAGAATATAATTAATATATGAATTTGATTCATATAAAATATTAATTGTATATAT-TTTACA
130 GGAAAAGAATATAACTAATATATGAATTTGATTCATACAAAATATTAATT-T-TATATGTTTACA
* * * * * *
24184528 GAATTTATTAATAT-AACAAGTTATATTAACT-AATTTTGGTCAAAATATATATGACATGGAAAT
193 GAATTTATTAATATAAACAA-TTATATTAA-TAAAGTTCGGTCAAAATATAAAAGACATGAAAAC
24184591 TAATATTCTTTTGGAAAGA
256 TAATATTCTTTTGGAAAGA
* * *
24184610 ATATAATTAATATATGAATTTTATTCATACAAAATATTAATTGTATATATCTTACTGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATT
* * * * * *
24184675 AACATAAACAGTTATATTAATTAATTTCGGTTAAAATATAAAAGACATGAAAATTAATATTGTTT
66 AA-TTTAACAATTATATTAATTAATTTCGGTAAAAATATAAAAGACATGGAAATTAATATT-CTT
24184740 TGGAAAA-AATATA
129 TGGAAAAGAATATA
24184753 CTTTTTCCTA
Statistics
Matches: 371, Mismatches: 38, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
274 85 0.23
275 232 0.63
276 45 0.12
277 9 0.02
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.40
Consensus pattern (274 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATT
AATTTAACAATTATATTAATTAATTTCGGTAAAAATATAAAAGACATGGAAATTAATATTCTTTG
GAAAAGAATATAACTAATATATGAATTTGATTCATACAAAATATTAATTTTATATGTTTACAGAA
TTTATTAATATAAACAATTATATTAATAAAGTTCGGTCAAAATATAAAAGACATGAAAACTAATA
TTCTTTTGGAAAGA
Found at i:24184637 original size:138 final size:137
Alignment explanation
Indices: 24184060--24184752 Score: 957
Period size: 138 Copynumber: 5.0 Consensus size: 137
24184050 GAGAACATAG
* *
24184060 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTTTATATATTTTACAAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATT
* * *
24184125 AATATAAAAAATTATATTAATTAATTTCGGCCAAAATATAAAAGACATGGAAATTAATATTCTTT
66 AATATAACAAGTTATATTAA-TAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
*
24184190 TAGAAAGA
130 TGGAAAGA
* * *
24184198 ATATAACTAATATATGAATTTGATTCGTACAAAATATTAATT-T-TATATGTTTACCGAATTTAT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATAT-TTTACAGAATTTAT
** * * *
24184261 TTGTATAAACAA-TTATATTAATAAAGTTCGGTCAAAATATAAAAGACATGAAAACTAATATTCT
65 TAATAT-AACAAGTTATATTAAT-AATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCT
24184325 TTTGGAAAGA
128 TTTGGAAAGA
* *
24184335 ATATAACTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATT
* * * * * *
24184400 AATTTAACTATTTATATTAATAAATTT-TGTAAAAATATAAAATACATGGAAATTAATATTC-TT
66 AATATAACAAGTTATATTAAT-AATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
24184463 TGGAAAAGA
130 TGG-AAAGA
*
24184472 ATATAATTAATATATGAATTTGATTCATATAAAATATTAATTGTATATATTTTACAGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATT
* * *
24184537 AATATAACAAGTTATATTAACTAATTTTGGTCAAAATATATATGACATGGAAATTAATATTCTTT
66 AATATAACAAGTTATATTAA-TAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
24184602 TGGAAAGA
130 TGGAAAGA
* * *
24184610 ATATAATTAATATATGAATTTTATTCATACAAAATATTAATTGTATATATCTTACTGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATT
* * * *
24184675 AACATAA-ACAGTTATATTAATTAATTTCGGTTAAAATATAAAAGACATGAAAATTAATATTGTT
66 AATATAACA-AGTTATATTAA-TAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTT
*
24184739 TTGGAAAAA
129 TTGGAAAGA
24184748 ATATA
1 ATATA
24184753 CTTTTTCCTA
Statistics
Matches: 497, Mismatches: 47, Indels: 22
0.88 0.08 0.04
Matches are distributed among these distances:
136 11 0.02
137 236 0.47
138 240 0.48
139 10 0.02
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.40
Consensus pattern (137 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATT
AATATAACAAGTTATATTAATAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
GGAAAGA
Found at i:24185554 original size:20 final size:21
Alignment explanation
Indices: 24185531--24185571 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
24185521 ATCCTTTTTA
*
24185531 GCATTTT-TAACTTAGTGATT
1 GCATTTTCTAACTCAGTGATT
24185551 GCATTTTCTAACTCAGTGATT
1 GCATTTTCTAACTCAGTGATT
24185572 CTTGGTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.46
Consensus pattern (21 bp):
GCATTTTCTAACTCAGTGATT
Found at i:24195587 original size:18 final size:16
Alignment explanation
Indices: 24195564--24195602 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
24195554 TAACAAAATG
24195564 ATGCAGTGACAAAATAAA
1 ATGCAGTG--AAAATAAA
*
24195582 ATGCAGTGATAATAAA
1 ATGCAGTGAAAATAAA
24195598 ATGCA
1 ATGCA
24195603 TTAAAACTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 12 0.60
18 8 0.40
ACGTcount: A:0.51, C:0.10, G:0.18, T:0.21
Consensus pattern (16 bp):
ATGCAGTGAAAATAAA
Found at i:24195733 original size:15 final size:16
Alignment explanation
Indices: 24195707--24195739 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
24195697 GTCATGGTTC
24195707 TTCACTTTCTTGCCCT
1 TTCACTTTCTTGCCCT
*
24195723 TTCAC-TTCTTGTCCT
1 TTCACTTTCTTGCCCT
24195738 TT
1 TT
24195740 GAACCAATCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.06, C:0.33, G:0.06, T:0.55
Consensus pattern (16 bp):
TTCACTTTCTTGCCCT
Found at i:24207731 original size:18 final size:18
Alignment explanation
Indices: 24207708--24207743 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24207698 AGCACCAAAG
*
24207708 AAGAAGGACAAGGAAAAA
1 AAGAAGAACAAGGAAAAA
*
24207726 AAGAAGAAGAAGGAAAAA
1 AAGAAGAACAAGGAAAAA
24207744 GGGTGATGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.28, T:0.00
Consensus pattern (18 bp):
AAGAAGAACAAGGAAAAA
Done.