Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032245.1 Gossypioides kirkii chromosome KI_2_4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41238926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 6100 characters in sequence are not A, C, G, or T
File 85 of 132
Found at i:25541884 original size:13 final size:14
Alignment explanation
Indices: 25541858--25541892 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
25541848 TATATATTTA
*
25541858 TTTTTTTTTCTTTC
1 TTTTCTTTTCTTTC
25541872 TTTTCTTTT-TTTC
1 TTTTCTTTTCTTTC
25541885 TTTTCTTT
1 TTTTCTTT
25541893 ATGTGACTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTCTTTTCTTTC
Found at i:25542947 original size:20 final size:21
Alignment explanation
Indices: 25542922--25542966 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
25542912 TCTTCGTATT
*
25542922 TCTTCCCTTTTTTC-TTCTCC
1 TCTTCCCTTTCTTCTTTCTCC
*
25542942 TCTT-CCTTTCTTCTTTCTCT
1 TCTTCCCTTTCTTCTTTCTCC
25542962 TCTTC
1 TCTTC
25542967 TCTTACTCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (21 bp):
TCTTCCCTTTCTTCTTTCTCC
Found at i:25588622 original size:9 final size:9
Alignment explanation
Indices: 25588608--25588633 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
25588598 AGCAAGTTAC
25588608 GTTTAATGT
1 GTTTAATGT
25588617 GTTTAATGT
1 GTTTAATGT
25588626 GTTTAATG
1 GTTTAATG
25588634 CGTTAAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (9 bp):
GTTTAATGT
Found at i:25609663 original size:18 final size:18
Alignment explanation
Indices: 25609640--25609690 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
25609630 CACATCATTA
25609640 TCAGATG-AAGTCACATGC
1 TCAGATGCAA-TCACATGC
25609658 TCAGATGCAATCACATGC
1 TCAGATGCAATCACATGC
*
25609676 TC-GTATGCAACCACA
1 TCAG-ATGCAATCACA
25609691 GCAGACTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 1 0.03
18 27 0.90
19 2 0.07
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (18 bp):
TCAGATGCAATCACATGC
Found at i:25625366 original size:62 final size:59
Alignment explanation
Indices: 25625283--25625399 Score: 155
Period size: 62 Copynumber: 1.9 Consensus size: 59
25625273 AGTGATTATC
* *
25625283 TTAATATTAAATTATATTTAATATTTATCTTGTAGATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTATATTTAATATTTATC-T-TA-ATAAACATTATATTAATTTAATAAGAT
* *
25625345 TTAATATTGAATT-TAATTTAATATTTATCTTAATAAACATTATGTTAATTTAATA
1 TTAATATTAAATTAT-ATTTAATATTTATCTTAATAAACATTATATTAATTTAATA
25625400 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
59 20 0.40
60 2 0.04
61 2 0.04
62 26 0.52
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTATATTTAATATTTATCTTAATAAACATTATATTAATTTAATAAGAT
Found at i:25646345 original size:22 final size:23
Alignment explanation
Indices: 25646308--25646354 Score: 87
Period size: 22 Copynumber: 2.1 Consensus size: 23
25646298 TTAGATTTTC
25646308 TTTCTTTCATTTAGGTTTTAGTT
1 TTTCTTTCATTTAGGTTTTAGTT
25646331 TTTCTTTC-TTTAGGTTTTAGTT
1 TTTCTTTCATTTAGGTTTTAGTT
25646353 TT
1 TT
25646355 GTTTATTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.11, C:0.09, G:0.13, T:0.68
Consensus pattern (23 bp):
TTTCTTTCATTTAGGTTTTAGTT
Found at i:25649928 original size:16 final size:18
Alignment explanation
Indices: 25649903--25649939 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
25649893 AAATAAAACT
*
25649903 AAAATGAGAA-TGATATG
1 AAAATGAGAATTGAGATG
25649920 AAAAT-AGAATTGAGATG
1 AAAATGAGAATTGAGATG
25649937 AAA
1 AAA
25649940 CGGATTATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.57, C:0.00, G:0.22, T:0.22
Consensus pattern (18 bp):
AAAATGAGAATTGAGATG
Found at i:25656088 original size:15 final size:15
Alignment explanation
Indices: 25656068--25656098 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25656058 TAAGTATTTT
*
25656068 ATTATTGTTATAATA
1 ATTATTATTATAATA
25656083 ATTATTATTATAATA
1 ATTATTATTATAATA
25656098 A
1 A
25656099 AGTAAAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (15 bp):
ATTATTATTATAATA
Found at i:25658917 original size:22 final size:24
Alignment explanation
Indices: 25658873--25658917 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
25658863 AACACAAAGA
**
25658873 TTTGGAGGAAGCCACCACGATCAG
1 TTTGGAGGAAGCCACCAAAATCAG
25658897 TTTGGA-GAA-CCACCAAAATCA
1 TTTGGAGGAAGCCACCAAAATCA
25658918 TCAAGAGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
23 3 0.16
24 6 0.32
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (24 bp):
TTTGGAGGAAGCCACCAAAATCAG
Found at i:25660725 original size:38 final size:39
Alignment explanation
Indices: 25660644--25660733 Score: 105
Period size: 38 Copynumber: 2.4 Consensus size: 39
25660634 TTTGGGCATG
* * * *
25660644 CTCATGCAGTGATAATTTTGGGCGCAATTCTGGACATCA
1 CTCATGCAGTGACAATTCTAGGCACAATTCTGGACATCA
*
25660683 -TCATGCAGTGACAATTCTAGGCACAATTCT-GA-ATAGA
1 CTCATGCAGTGACAATTCTAGGCACAATTCTGGACAT-CA
25660720 CTCATGCAGTGACA
1 CTCATGCAGTGACA
25660734 TTAGTAGTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
36 2 0.05
37 3 0.07
38 39 0.89
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (39 bp):
CTCATGCAGTGACAATTCTAGGCACAATTCTGGACATCA
Found at i:25663711 original size:20 final size:19
Alignment explanation
Indices: 25663686--25663723 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
25663676 AAAGTTAGAA
25663686 AAAAGAATAATATTCTTTCC
1 AAAAGAATAATATT-TTTCC
*
25663706 AAAAGAATATTATTTTTC
1 AAAAGAATAATATTTTTC
25663724 TTGTCTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (19 bp):
AAAAGAATAATATTTTTCC
Found at i:25663943 original size:138 final size:138
Alignment explanation
Indices: 25663695--25663983 Score: 447
Period size: 138 Copynumber: 2.1 Consensus size: 138
25663685 AAAAAGAATA
* * *
25663695 ATATTCTTTCCAAAAGAATATTATTTTTCTTGTCTTTTATATTTTGATCAAAATTAATTAATATA
1 ATATTCTTTCCAAAAGAATATTATATTTCTTATCTTTTATATTTTGACCAAAATTAATTAATATA
* * * *
25663760 ACTATTTATATTAATAAATTTGGTAAAATATATACATTTAATATTTTGTATGAGTCAAATTCATA
66 ACTATTTATATTAAAAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAAA
25663825 TATTAATT
131 TATTAATT
*
25663833 ATATTCTTTCCAAAAGAATATTA-ATTTCTATATCTTTTATATTTTGACCGAAATTAATTAATAT
1 ATATTCTTTCCAAAAGAATATTATATTTCT-TATCTTTTATATTTTGACCAAAATTAATTAATAT
* * *
25663897 AATTGTTTAT-TTAAAAAAATTTGGTAACATATATACAATTAATATTTTGTATGAATCAAATTCA
65 AACTATTTATATT-AAAAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCA
25663961 AATATTAATT
129 AATATTAATT
25663971 ATATTCTTTCCAA
1 ATATTCTTTCCAA
25663984 TTTTATTTTT
Statistics
Matches: 138, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
137 7 0.05
138 131 0.95
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (138 bp):
ATATTCTTTCCAAAAGAATATTATATTTCTTATCTTTTATATTTTGACCAAAATTAATTAATATA
ACTATTTATATTAAAAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAAA
TATTAATT
Found at i:25664122 original size:24 final size:25
Alignment explanation
Indices: 25664062--25664122 Score: 65
Period size: 24 Copynumber: 2.4 Consensus size: 25
25664052 TCCATCTCTT
*
25664062 TATATATCTATTATTTATAATATTTA
1 TATATATGTA-TATTTATAATATTTA
25664088 TAT-TATGGTATA-TTATAAT-TTTGA
1 TATATAT-GTATATTTATAATATTT-A
25664112 TATATATGTAT
1 TATATATGTAT
25664123 GAGATGATCC
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
23 3 0.10
24 15 0.48
25 8 0.26
26 5 0.16
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.56
Consensus pattern (25 bp):
TATATATGTATATTTATAATATTTA
Found at i:25691113 original size:10 final size:9
Alignment explanation
Indices: 25691079--25691105 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
25691069 CCTATGAGTG
25691079 TTTCTTTTT
1 TTTCTTTTT
25691088 TTTCTTTTT
1 TTTCTTTTT
25691097 TTTCTTTTT
1 TTTCTTTTT
25691106 GGTTCTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:25692172 original size:18 final size:19
Alignment explanation
Indices: 25692137--25692178 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
25692127 ATGAAATTGT
25692137 CTAAAACAATAAATAAAAA
1 CTAAAACAATAAATAAAAA
* *
25692156 TTAAAACAAT-TATAAAAA
1 CTAAAACAATAAATAAAAA
25692174 CTAAA
1 CTAAA
25692179 GAAAACCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (19 bp):
CTAAAACAATAAATAAAAA
Found at i:25710245 original size:13 final size:13
Alignment explanation
Indices: 25710224--25710257 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
25710214 TTCTCGTTTC
*
25710224 AAATGAAACTACA
1 AAATAAAACTACA
25710237 AAATAAAACTACA
1 AAATAAAACTACA
*
25710250 AATTAAAA
1 AAATAAAA
25710258 TCTAGTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.68, C:0.12, G:0.03, T:0.18
Consensus pattern (13 bp):
AAATAAAACTACA
Found at i:25732408 original size:94 final size:94
Alignment explanation
Indices: 25732304--25732493 Score: 308
Period size: 94 Copynumber: 2.0 Consensus size: 94
25732294 TAATATAACT
* *
25732304 TATTTTAATTACGAATGAATATTTTTATAATTTTTCTAACTAAAACGATATCCAATTGATTTGTA
1 TATTTTAATTACGAATGAATATTTTTATAATTTTTCTAACTAAAAAGACATCCAATTGATTTGTA
*
25732369 AAATTATCTCAATAGTATAAATACAATTA
66 AAATTATCTCAATAATATAAATACAATTA
* * * *
25732398 TATTTTAATTACGAATGGATATTTTTATAATTTTTCTAACTAAAAATACATCTAATTGATTTGTG
1 TATTTTAATTACGAATGAATATTTTTATAATTTTTCTAACTAAAAAGACATCCAATTGATTTGTA
*
25732463 AAATTATCTCAATAATATAACTACAATTA
66 AAATTATCTCAATAATATAAATACAATTA
25732492 TA
1 TA
25732494 GAAGAAATAC
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 88 1.00
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.43
Consensus pattern (94 bp):
TATTTTAATTACGAATGAATATTTTTATAATTTTTCTAACTAAAAAGACATCCAATTGATTTGTA
AAATTATCTCAATAATATAAATACAATTA
Found at i:25742204 original size:17 final size:17
Alignment explanation
Indices: 25742184--25742239 Score: 76
Period size: 17 Copynumber: 3.3 Consensus size: 17
25742174 CCCTTGACTT
25742184 TTAACCTTCCATCTTCC
1 TTAACCTTCCATCTTCC
* ** *
25742201 TTAACCTTCCTTGATCT
1 TTAACCTTCCATCTTCC
25742218 TTAACCTTCCATCTTCC
1 TTAACCTTCCATCTTCC
25742235 TTAAC
1 TTAAC
25742240 TTTTCATATT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.20, C:0.36, G:0.02, T:0.43
Consensus pattern (17 bp):
TTAACCTTCCATCTTCC
Found at i:25742221 original size:34 final size:34
Alignment explanation
Indices: 25742175--25742239 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
25742165 TTTTCATCGC
25742175 CCTTGACTTTTAACCTTCCATCTTCCTTAACCTT
1 CCTTGACTTTTAACCTTCCATCTTCCTTAACCTT
25742209 CCTTGA-TCTTTAACCTTCCATCTTCCTTAAC
1 CCTTGACT-TTTAACCTTCCATCTTCCTTAAC
25742240 TTTTCATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 1 0.03
34 29 0.97
ACGTcount: A:0.18, C:0.35, G:0.03, T:0.43
Consensus pattern (34 bp):
CCTTGACTTTTAACCTTCCATCTTCCTTAACCTT
Found at i:25746516 original size:24 final size:24
Alignment explanation
Indices: 25746484--25746534 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
25746474 TAAATGGATG
* *
25746484 TTTAACCTTTCATCTCCCTTGACC
1 TTTAACCTTCCATCTCCCTTAACC
*
25746508 TTTAACCTTCCATCTTCCTTAACC
1 TTTAACCTTCCATCTCCCTTAACC
25746532 TTT
1 TTT
25746535 CATATTCTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.18, C:0.35, G:0.02, T:0.45
Consensus pattern (24 bp):
TTTAACCTTCCATCTCCCTTAACC
Found at i:25753119 original size:13 final size:14
Alignment explanation
Indices: 25753101--25753130 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
25753091 GTCAATGCAA
25753101 TTAGA-GTTAAATG
1 TTAGAGGTTAAATG
25753114 TTAGAGGTTAAATG
1 TTAGAGGTTAAATG
25753128 TTA
1 TTA
25753131 ATGTACTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (14 bp):
TTAGAGGTTAAATG
Found at i:25755231 original size:24 final size:24
Alignment explanation
Indices: 25755203--25755257 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
25755193 GGCGCTCACC
25755203 CTTATCCTGGTG-CTTCTTCTTCTT
1 CTTATCCTGGTGCCTTCTTC-TCTT
* * *
25755227 TTTATCCTTGTGCCTTTTTCTCTT
1 CTTATCCTGGTGCCTTCTTCTCTT
25755251 CTTATCC
1 CTTATCC
25755258 GTCGTACCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 20 0.77
25 6 0.23
ACGTcount: A:0.05, C:0.29, G:0.09, T:0.56
Consensus pattern (24 bp):
CTTATCCTGGTGCCTTCTTCTCTT
Found at i:25756905 original size:52 final size:51
Alignment explanation
Indices: 25756832--25757021 Score: 335
Period size: 52 Copynumber: 3.7 Consensus size: 51
25756822 ATTTCATTTA
*
25756832 ATACTCACGATGACACATAGTCATCGGACCTTTTAATCTATAAAGAATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAAG-ATTCAT
25756884 ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAATGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAA-GATTCAT
25756936 ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAA-GATTCAT
*
25756988 ATACTCCCGATGACACATAGTCATCGGACCTTTT
1 ATACTCACGATGACACATAGTCATCGGACCTTTT
25757022 CTTTATTTAC
Statistics
Matches: 134, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
52 133 0.99
53 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.30
Consensus pattern (51 bp):
ATACTCACGATGACACATAGTCATCGGACCTTTTAATCCATAAAGATTCAT
Found at i:25760609 original size:20 final size:21
Alignment explanation
Indices: 25760584--25760622 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25760574 GTAAGGAATT
25760584 TGAAAC-AACAAAAGTAAAAG
1 TGAAACAAACAAAAGTAAAAG
*
25760604 TGAAACAAATAAAAGTAAA
1 TGAAACAAACAAAAGTAAA
25760623 TAGAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.67, C:0.08, G:0.13, T:0.13
Consensus pattern (21 bp):
TGAAACAAACAAAAGTAAAAG
Found at i:25760634 original size:21 final size:21
Alignment explanation
Indices: 25760593--25760634 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
25760583 TTGAAACAAC
* *
25760593 AAAAGTAAAAGTGAAACAAAT
1 AAAAGTAAAAGTAAAAAAAAT
25760614 AAAAGTAAATAG-AAAAAAAAT
1 AAAAGTAAA-AGTAAAAAAAAT
25760635 GCGTCGACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.71, C:0.02, G:0.12, T:0.14
Consensus pattern (21 bp):
AAAAGTAAAAGTAAAAAAAAT
Found at i:25766846 original size:19 final size:20
Alignment explanation
Indices: 25766813--25766853 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
25766803 AGGTTAAAAG
25766813 AAACTTGTAGAGAAAGAAAT
1 AAACTTGTAGAGAAAGAAAT
*
25766833 AAACTTGT-GAGAAAGTAAT
1 AAACTTGTAGAGAAAGAAAT
25766852 AA
1 AA
25766854 CGAAAATAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.54, C:0.05, G:0.20, T:0.22
Consensus pattern (20 bp):
AAACTTGTAGAGAAAGAAAT
Found at i:25798509 original size:15 final size:15
Alignment explanation
Indices: 25798491--25798541 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
25798481 CATCTACATC
25798491 CTCTTCATCCTTCTT
1 CTCTTCATCCTTCTT
* *
25798506 CTCTTCCTCCTTCTC
1 CTCTTCATCCTTCTT
25798521 CTCTTCAATTCCTTTCTT
1 CTCTTC-A-TCC-TTCTT
25798539 CTC
1 CTC
25798542 CTCAAGGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 19 0.66
17 3 0.10
18 7 0.24
ACGTcount: A:0.06, C:0.43, G:0.00, T:0.51
Consensus pattern (15 bp):
CTCTTCATCCTTCTT
Found at i:25806087 original size:24 final size:24
Alignment explanation
Indices: 25806039--25806085 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
25806029 AAGAGTTCAT
25806039 TTGTCAACGCAAATATAAAATAAA
1 TTGTCAACGCAAATATAAAATAAA
*
25806063 TTGTCAGA-GCAAAT-TAAGATAAA
1 TTGTCA-ACGCAAATATAAAATAAA
25806086 ATGAATAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 8 0.38
24 12 0.57
25 1 0.05
ACGTcount: A:0.51, C:0.11, G:0.13, T:0.26
Consensus pattern (24 bp):
TTGTCAACGCAAATATAAAATAAA
Found at i:25809784 original size:16 final size:17
Alignment explanation
Indices: 25809763--25809801 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
25809753 AAAACTGTGG
25809763 TTTGGGACT-ATTTTAC
1 TTTGGGACTGATTTTAC
* *
25809779 TTTGGGATTGATTTTGC
1 TTTGGGACTGATTTTAC
25809796 TTTGGG
1 TTTGGG
25809802 TTTATCACGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.13, C:0.08, G:0.28, T:0.51
Consensus pattern (17 bp):
TTTGGGACTGATTTTAC
Found at i:25815539 original size:41 final size:38
Alignment explanation
Indices: 25815489--25815599 Score: 101
Period size: 32 Copynumber: 3.0 Consensus size: 38
25815479 CATATTTTAG
* * *
25815489 TATTAAAATTTTTATTTTTTTTAATGTTGGTTGGATATTGA
1 TATTAAAATTATTA-TGTTTTGAA-GTT-GTTGGATATTGA
*
25815530 TATTGAAATTATTATGTTTTGAAGTTGTTGGATATTGA
1 TATTAAAATTATTATGTTTTGAAGTTGTTGGATATTGA
25815568 -A-T----TTATTATGTTTT-AAGTTTGTTGGATATTGA
1 TATTAAAATTATTATGTTTTGAAG-TTGTTGGATATTGA
25815600 AATGATTGAC
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
31 3 0.05
32 26 0.40
36 1 0.02
37 1 0.02
38 12 0.18
39 3 0.05
40 7 0.11
41 12 0.18
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (38 bp):
TATTAAAATTATTATGTTTTGAAGTTGTTGGATATTGA
Found at i:25815564 original size:32 final size:32
Alignment explanation
Indices: 25815528--25815602 Score: 125
Period size: 32 Copynumber: 2.3 Consensus size: 32
25815518 GTTGGATATT
25815528 GATATTGAAATTATTATGTTTTGAAG-TTGTTG
1 GATATTGAAATTATTATGTTTT-AAGTTTGTTG
*
25815560 GATATTGAATTTATTATGTTTTAAGTTTGTTG
1 GATATTGAAATTATTATGTTTTAAGTTTGTTG
25815592 GATATTGAAAT
1 GATATTGAAAT
25815603 GATTGACAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 3 0.08
32 37 0.93
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (32 bp):
GATATTGAAATTATTATGTTTTAAGTTTGTTG
Found at i:25816752 original size:46 final size:46
Alignment explanation
Indices: 25816683--25816784 Score: 132
Period size: 46 Copynumber: 2.2 Consensus size: 46
25816673 ACTACTATTT
* * ** *
25816683 TGTAATATTAGTTACGCATTTGGACGATGTTGTAGTTATCAAGTGG
1 TGTAATACTAGTTACGCAGTTGGAAAATATTGTAGTTATCAAGTGG
* *
25816729 TGTAATACTAGTTATGCAGTTGGAAAATATTGTAGTTATCATGTGG
1 TGTAATACTAGTTACGCAGTTGGAAAATATTGTAGTTATCAAGTGG
*
25816775 TGTACTACTA
1 TGTAATACTA
25816785 ATTTGTAATA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (46 bp):
TGTAATACTAGTTACGCAGTTGGAAAATATTGTAGTTATCAAGTGG
Found at i:25817312 original size:20 final size:21
Alignment explanation
Indices: 25817273--25817354 Score: 80
Period size: 20 Copynumber: 4.0 Consensus size: 21
25817263 TTTTGAAACA
*
25817273 ATTTTAAAATCAAGTTAAAATT
1 ATTTTAAAA-CAAGTCAAAATT
*
25817295 ATTTT-AAACAAGTCAAAATC
1 ATTTTAAAACAAGTCAAAATT
* *
25817315 ATTTTAACAC-A-TCAAAATG
1 ATTTTAAAACAAGTCAAAATT
* *
25817334 ATTTTCAAACAAGTCAGAATT
1 ATTTTAAAACAAGTCAAAATT
25817355 GCTCTAGGCC
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
19 15 0.31
20 17 0.35
21 12 0.24
22 5 0.10
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.34
Consensus pattern (21 bp):
ATTTTAAAACAAGTCAAAATT
Found at i:25822164 original size:18 final size:18
Alignment explanation
Indices: 25822141--25822176 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
25822131 AATTTTCGAC
25822141 TTCGAAT-AACTCGAATAA
1 TTCGAATAAAC-CGAATAA
25822159 TTCGAATAAACCGAATAA
1 TTCGAATAAACCGAATAA
25822177 AACTATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.47, C:0.17, G:0.11, T:0.25
Consensus pattern (18 bp):
TTCGAATAAACCGAATAA
Found at i:25823360 original size:50 final size:50
Alignment explanation
Indices: 25823285--25823383 Score: 180
Period size: 50 Copynumber: 2.0 Consensus size: 50
25823275 AAAAAATCAG
25823285 GTGTGGAAGGGTGCTCATGGGCGGCACCGATCAACTACAGCAAACCTCAA
1 GTGTGGAAGGGTGCTCATGGGCGGCACCGATCAACTACAGCAAACCTCAA
* *
25823335 GTGTGGAAGGGTGCTCATGGGCGGCACTGATCAACTACAGCAAGCCTCA
1 GTGTGGAAGGGTGCTCATGGGCGGCACCGATCAACTACAGCAAACCTCA
25823384 GGAGTGGCTG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.26, C:0.25, G:0.31, T:0.17
Consensus pattern (50 bp):
GTGTGGAAGGGTGCTCATGGGCGGCACCGATCAACTACAGCAAACCTCAA
Found at i:25823842 original size:3 final size:3
Alignment explanation
Indices: 25823836--25823884 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
25823826 AGAAGATAAA
* * * *
25823836 AAG AAG AAA AAG AAG AAA AAG AAG AAG AAG AAG -AG GAG AAG AAG GAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25823883 AA
1 AA
25823885 AAAAAAATGA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:25823847 original size:9 final size:9
Alignment explanation
Indices: 25823833--25823869 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
25823823 TTAAGAAGAT
25823833 AAAAAGAAG
1 AAAAAGAAG
25823842 AAAAAGAAG
1 AAAAAGAAG
25823851 AAAAAGAAG
1 AAAAAGAAG
*
25823860 AAGAAGAAG
1 AAAAAGAAG
25823869 A
1 A
25823870 GGAGAAGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (9 bp):
AAAAAGAAG
Found at i:25824426 original size:4 final size:4
Alignment explanation
Indices: 25824417--25824447 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
25824407 ACATTCCTCT
25824417 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
25824448 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:25825198 original size:50 final size:49
Alignment explanation
Indices: 25825133--25825294 Score: 207
Period size: 50 Copynumber: 3.2 Consensus size: 49
25825123 TTTAATAAAG
* *
25825133 TCATGCATTATGTAACTTTCATGTTGGTTAAGTTTGCATCATAAATAAT
1 TCATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCATCATAAATAAT
* * *
25825182 TACATGCATTTTGTAACTCTCATCTTAGTTAAGTTTGCATCATAAATTAT
1 T-CATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCATCATAAATAAT
* * *
25825232 GTCATGCATTATGTAACTCCCATGTTAGTTAAAATTTGCATCATTAAATTAAG
1 -TCATGCATTATGTAACTCTCATGTTAGTT-AAGTTTGCATCA-TAAA-TAAT
25825285 TCATGCATTA
1 TCATGCATTA
25825295 AGCAATTTAT
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
49 1 0.01
50 68 0.70
51 12 0.12
52 14 0.14
53 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.41
Consensus pattern (49 bp):
TCATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCATCATAAATAAT
Found at i:25825597 original size:7 final size:7
Alignment explanation
Indices: 25825585--25825618 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
25825575 ATTTTATATG
25825585 GAATTTT
1 GAATTTT
25825592 GAATTTT
1 GAATTTT
25825599 GAATTTT
1 GAATTTT
*
25825606 TAATTATT
1 GAATT-TT
25825614 GAATT
1 GAATT
25825619 AAAAGTTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (7 bp):
GAATTTT
Found at i:25827548 original size:36 final size:36
Alignment explanation
Indices: 25827498--25827591 Score: 161
Period size: 36 Copynumber: 2.6 Consensus size: 36
25827488 GGTAACAGGT
25827498 ATGACCTTTGGGTCAAAAGGGAGTAAAATGAGCATC
1 ATGACCTTTGGGTCAAAAGGGAGTAAAATGAGCATC
* *
25827534 ATGACCTTTAGGTCAATAGGGAGTAAAATGAGCATC
1 ATGACCTTTGGGTCAAAAGGGAGTAAAATGAGCATC
*
25827570 ATGACCTTTGGGTCAACAGGGA
1 ATGACCTTTGGGTCAAAAGGGA
25827592 ATCAGATATC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (36 bp):
ATGACCTTTGGGTCAAAAGGGAGTAAAATGAGCATC
Found at i:25833054 original size:22 final size:24
Alignment explanation
Indices: 25833029--25833075 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
25833019 TAAACTTTAA
25833029 TTTTAG-AATAA-AATA-AATAAAT
1 TTTTAGAAATAAGAATATAA-AAAT
25833051 TTTTAGAAATAAGAATATAAAAAT
1 TTTTAGAAATAAGAATATAAAAAT
25833075 T
1 T
25833076 ATTTTTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 5 0.23
24 9 0.41
25 2 0.09
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (24 bp):
TTTTAGAAATAAGAATATAAAAAT
Found at i:25833108 original size:29 final size:29
Alignment explanation
Indices: 25833033--25833109 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 29
25833023 CTTTAATTTT
* *
25833033 AGAATAAAATAAATAA-ATTTTTAGAAATA
1 AGAATATAA-AAATAATTTTTTTAGAAATA
*
25833062 AGAATATAAAAATTATTTTTTTA-AAA-A
1 AGAATATAAAAATAATTTTTTTAGAAATA
* *
25833089 ATAATATAAAAACTAAATTTT
1 AGAATATAAAAA-TAATTTTT
25833110 AAATATATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
27 12 0.30
28 14 0.35
29 14 0.35
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.36
Consensus pattern (29 bp):
AGAATATAAAAATAATTTTTTTAGAAATA
Found at i:25833109 original size:27 final size:29
Alignment explanation
Indices: 25833033--25833109 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 29
25833023 CTTTAATTTT
*
25833033 AGAATA-AAATAAATAAATTTTTAGAAATA
1 AGAATATAAA-AACTAAATTTTTAGAAATA
* **
25833062 AGAATATAAAAATTATTTTTTTA-AAA-A
1 AGAATATAAAAACTAAATTTTTAGAAATA
*
25833089 ATAATATAAAAACTAAATTTT
1 AGAATATAAAAACTAAATTTT
25833110 AAATATATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
27 18 0.45
28 3 0.08
29 16 0.40
30 3 0.08
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.36
Consensus pattern (29 bp):
AGAATATAAAAACTAAATTTTTAGAAATA
Found at i:25837810 original size:3 final size:3
Alignment explanation
Indices: 25837802--25837827 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
25837792 AAAGGGGAAA
25837802 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
25837828 GAAGATGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:25840531 original size:18 final size:18
Alignment explanation
Indices: 25840508--25840550 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
25840498 GGTAGTAAGG
*
25840508 GTGGTGAGGGTGATGGAA
1 GTGGTGAGGGTGAGGGAA
*
25840526 GTGGTGAGGGTGAGGGAG
1 GTGGTGAGGGTGAGGGAA
25840544 GTGGTGA
1 GTGGTGA
25840551 TGGTTCGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.19, C:0.00, G:0.60, T:0.21
Consensus pattern (18 bp):
GTGGTGAGGGTGAGGGAA
Found at i:25840594 original size:45 final size:45
Alignment explanation
Indices: 25840530--25840620 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
25840520 ATGGAAGTGG
* *
25840530 TGAGGGTGAGGGAGGTGGTGATGGTTCGGGTAAGGATGAGGGTGT
1 TGAGGGTGAGGGAGGTGGTGAGGGTTCGGGTAAGGATAAGGGTGT
*
25840575 TGAGGGTGAGGGAGGTGGTGAGGGTTCGGGTAAGGGTAAGGGTGT
1 TGAGGGTGAGGGAGGTGGTGAGGGTTCGGGTAAGGATAAGGGTGT
25840620 T
1 T
25840621 AATAGTGAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.18, C:0.02, G:0.56, T:0.24
Consensus pattern (45 bp):
TGAGGGTGAGGGAGGTGGTGAGGGTTCGGGTAAGGATAAGGGTGT
Found at i:25844328 original size:22 final size:22
Alignment explanation
Indices: 25844296--25844340 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
25844286 TACTCTTAGT
**
25844296 AAAACAACAACATTGATTAAAC
1 AAAACAACAACATCAATTAAAC
*
25844318 AAAACAGCAACATCAATTAAAC
1 AAAACAACAACATCAATTAAAC
25844340 A
1 A
25844341 TTATTAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.04, T:0.16
Consensus pattern (22 bp):
AAAACAACAACATCAATTAAAC
Found at i:25844676 original size:22 final size:22
Alignment explanation
Indices: 25844648--25844696 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
25844638 AGGGAATAGA
* *
25844648 AAACAAAACAACAATATTGATT
1 AAACAAAACAACAACATCGATT
* *
25844670 AAACAAAATAACAGCATCGATT
1 AAACAAAACAACAACATCGATT
25844692 AAACA
1 AAACA
25844697 TGATTAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.59, C:0.16, G:0.06, T:0.18
Consensus pattern (22 bp):
AAACAAAACAACAACATCGATT
Found at i:25845772 original size:31 final size:31
Alignment explanation
Indices: 25845734--25845792 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
25845724 TACCTACTTA
25845734 AAAAAGTGTCAAG-TTCAGGTACCAAATTAAG
1 AAAAAGTGTCAAGTTTCA-GTACCAAATTAAG
*
25845765 AAAAAGTGTCAAGTTTCAGTACTAAATT
1 AAAAAGTGTCAAGTTTCAGTACCAAATT
25845793 GGACAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 22 0.85
32 4 0.15
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (31 bp):
AAAAAGTGTCAAGTTTCAGTACCAAATTAAG
Found at i:25845801 original size:32 final size:31
Alignment explanation
Indices: 25845734--25845801 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
25845724 TACCTACTTA
*
25845734 AAAAAGTGTCAAGTTCAGGTACCAAATTAAG
1 AAAAAGTGTCAAGTTCAGGTACCAAATTAAC
* *
25845765 AAAAAGTGTCAAGTTTCA-GTACTAAATTGGAC
1 AAAAAGTGTCAAG-TTCAGGTACCAAATT-AAC
25845797 AAAAA
1 AAAAA
25845802 AAATTTAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 22 0.69
32 10 0.31
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.24
Consensus pattern (31 bp):
AAAAAGTGTCAAGTTCAGGTACCAAATTAAC
Found at i:25846520 original size:28 final size:28
Alignment explanation
Indices: 25846489--25846542 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
25846479 ACAAAAAGTG
*
25846489 AAAA-GCGTTAGGGTTAAAGTATAAATTC
1 AAAATGCGTT-GGGTTAAAATATAAATTC
**
25846517 AAAATTTGTTGGGTTAAAATATAAAT
1 AAAATGCGTTGGGTTAAAATATAAAT
25846543 ATAAAAAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 19 0.86
29 3 0.14
ACGTcount: A:0.44, C:0.04, G:0.19, T:0.33
Consensus pattern (28 bp):
AAAATGCGTTGGGTTAAAATATAAATTC
Found at i:25846801 original size:22 final size:21
Alignment explanation
Indices: 25846760--25846801 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
25846750 ATGTTGGTGA
*
25846760 TATTTTATATTATTTAATTAT
1 TATTTTATAATATTTAATTAT
*
25846781 TATTTTAATAATATTTCATTA
1 TATTTT-ATAATATTTAATTA
25846802 AAGATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTTTATAATATTTAATTAT
Found at i:25849243 original size:6 final size:6
Alignment explanation
Indices: 25849227--25849262 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
25849217 TAACATGTAT
*
25849227 ATCTCA GTCTCA ATCTCA ATCTCA ATCTCA ATCTCA
1 ATCTCA ATCTCA ATCTCA ATCTCA ATCTCA ATCTCA
25849263 TGATAATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.31, C:0.33, G:0.03, T:0.33
Consensus pattern (6 bp):
ATCTCA
Found at i:25853054 original size:62 final size:63
Alignment explanation
Indices: 25852963--25853092 Score: 156
Period size: 62 Copynumber: 2.1 Consensus size: 63
25852953 CGAGGTTGGT
* * * * * *
25852963 TTCAATTCGCATTTGGTAACTCATGATGACACGGAGTCATCAGACCT-TTAATCCGTAATAGGA
1 TTCATTTCGCATTTGATAACTCACGATGACACAGAGTCATCAGACCTCATAATCCG-AAAAGGA
* * *
25853026 TTCATTTCTCATTTGAT-ACTCACGATGACACATAGTCATCGGACCTCATAATCCGAAAAGGA
1 TTCATTTCGCATTTGATAACTCACGATGACACAGAGTCATCAGACCTCATAATCCGAAAAGGA
25853088 TTCAT
1 TTCAT
25853093 ATGCTTACGA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
62 36 0.63
63 21 0.37
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (63 bp):
TTCATTTCGCATTTGATAACTCACGATGACACAGAGTCATCAGACCTCATAATCCGAAAAGGA
Found at i:25853125 original size:52 final size:52
Alignment explanation
Indices: 25853041--25853227 Score: 313
Period size: 52 Copynumber: 3.6 Consensus size: 52
25853031 TTCTCATTTG
25853041 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGAAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGAAAAGGATTCAT
* * *
25853093 ATGCTTACGATGACACATGGTCATCGGACCTCATAATCC-ATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGA-AAAGGATTCAT
*
25853145 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGAAAAGGATTCAT
*
25853197 ATACTCACGATGATACATAGTCATCGGACCT
1 ATACTCACGATGACACATAGTCATCGGACCT
25853228 TTTGCATTTA
Statistics
Matches: 125, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
51 1 0.01
52 124 0.99
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGAAAAGGATTCAT
Found at i:25856635 original size:26 final size:26
Alignment explanation
Indices: 25856581--25856646 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
25856571 CCTGCTTATA
*
25856581 CAGCAATAACTCTGAACATATTCACG
1 CAGCAATAATTCTGAACATATTCACG
*
25856607 CAGCGATAATTCTGAACA-AGTTC-CTG
1 CAGCAATAATTCTGAACATA-TTCAC-G
*
25856633 CAGCAACAATTCTG
1 CAGCAATAATTCTG
25856647 GGCGCAATGC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
25 2 0.06
26 32 0.94
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (26 bp):
CAGCAATAATTCTGAACATATTCACG
Found at i:25866830 original size:23 final size:24
Alignment explanation
Indices: 25866800--25866857 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
25866790 TTGGCTCGTT
* *
25866800 GACTTTGATTGAATC-GAATCATC
1 GACTTTGATTGAAACTGAACCATC
* *
25866823 GACTTTGA-TCAAACTGAACCATT
1 GACTTTGATTGAAACTGAACCATC
25866846 GACTTTGATTGA
1 GACTTTGATTGA
25866858 TCATTGATCC
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
22 4 0.14
23 22 0.79
24 2 0.07
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (24 bp):
GACTTTGATTGAAACTGAACCATC
Found at i:25873340 original size:17 final size:17
Alignment explanation
Indices: 25873318--25873351 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25873308 ATTTTAATAG
25873318 TTTAATACTTAATTTAT
1 TTTAATACTTAATTTAT
*
25873335 TTTAATACTTATTTTAT
1 TTTAATACTTAATTTAT
25873352 AGTATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTAATACTTAATTTAT
Found at i:25882668 original size:22 final size:22
Alignment explanation
Indices: 25882628--25882680 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
25882618 GAGAGCACTG
*
25882628 ATGTGCTATACAAAAAGCACAA
1 ATGTGCTAAACAAAAAGCACAA
** *
25882650 ATGTGCTAAACAACGAGCACTA
1 ATGTGCTAAACAAAAAGCACAA
*
25882672 ATGTTCTAA
1 ATGTGCTAA
25882681 TAATCGGAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (22 bp):
ATGTGCTAAACAAAAAGCACAA
Found at i:25884574 original size:28 final size:27
Alignment explanation
Indices: 25884543--25884632 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 27
25884533 TCTTGTTTAA
* *
25884543 AGCTCAAGTAAAGCTTTGATTCATCTGC
1 AGCTCGAGTAAA-CTTTGATTCATCTAC
*
25884571 AGCTCGGGTAGAACTTTGATTCATCTAC
1 AGCTCGAGTA-AACTTTGATTCATCTAC
* * *
25884599 AGCTCGAGTAGATCTTTGGTTCATCTAT
1 AGCTCGAGTA-AACTTTGATTCATCTAC
25884627 AGCTCG
1 AGCTCG
25884633 GGTAGAGCTT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
28 52 0.96
29 2 0.04
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33
Consensus pattern (27 bp):
AGCTCGAGTAAACTTTGATTCATCTAC
Found at i:25884645 original size:28 final size:28
Alignment explanation
Indices: 25884554--25884644 Score: 128
Period size: 28 Copynumber: 3.2 Consensus size: 28
25884544 GCTCAAGTAA
*
25884554 AGCTTTGATTCATCTGCAGCTCGGGTAG
1 AGCTTTGATTCATCTACAGCTCGGGTAG
* *
25884582 AACTTTGATTCATCTACAGCTCGAGTAG
1 AGCTTTGATTCATCTACAGCTCGGGTAG
* * *
25884610 ATCTTTGGTTCATCTATAGCTCGGGTAG
1 AGCTTTGATTCATCTACAGCTCGGGTAG
25884638 AGCTTTG
1 AGCTTTG
25884645 GACATGCTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (28 bp):
AGCTTTGATTCATCTACAGCTCGGGTAG
Found at i:25884669 original size:29 final size:29
Alignment explanation
Indices: 25884629--25884725 Score: 103
Period size: 29 Copynumber: 3.4 Consensus size: 29
25884619 TCATCTATAG
*
25884629 CTCGGGTAGAGCTTTGGACATGCTTACAT
1 CTCGGTTAGAGCTTTGGACATGCTTACAT
* * *
25884658 CTAGGTTAGAGC---GTA-AAGCTATTACAT
1 CTCGGTTAGAGCTTTGGACATGC--TTACAT
*
25884685 CTCGGGTAGAGCTTTGGACATGCTTACAT
1 CTCGGTTAGAGCTTTGGACATGCTTACAT
25884714 CTCGGTTAGAGC
1 CTCGGTTAGAGC
25884726 GTAAAGCTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
25 3 0.06
26 2 0.04
27 16 0.30
29 27 0.51
30 2 0.04
31 3 0.06
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (29 bp):
CTCGGTTAGAGCTTTGGACATGCTTACAT
Found at i:25884684 original size:27 final size:27
Alignment explanation
Indices: 25884652--25884752 Score: 82
Period size: 27 Copynumber: 3.7 Consensus size: 27
25884642 TTGGACATGC
25884652 TTACATCTAGGTTAGAGCGTAAAGCTA
1 TTACATCTAGGTTAGAGCGTAAAGCTA
* * * *
25884679 TTACATCTCGGGTAGAGCTTTGGACATGC--
1 TTACATCTAGGTTAGAGC---GTA-AAGCTA
*
25884708 TTACATCTCGGTTAGAGCGTAAAGCTA
1 TTACATCTAGGTTAGAGCGTAAAGCTA
*
25884735 TTACAGCTCAGG-TAGAGC
1 TTACATCT-AGGTTAGAGC
25884753 TTTGGTTTGC
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
25 3 0.05
26 2 0.03
27 29 0.50
28 2 0.03
29 17 0.29
30 2 0.03
31 3 0.05
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (27 bp):
TTACATCTAGGTTAGAGCGTAAAGCTA
Found at i:25884689 original size:56 final size:56
Alignment explanation
Indices: 25884627--25884757 Score: 235
Period size: 56 Copynumber: 2.3 Consensus size: 56
25884617 GTTCATCTAT
25884627 AGCTCGGGTAGAGCTTTGGACATGCTTACATCTAGGTTAGAGCGTAAAGCTATTAC
1 AGCTCGGGTAGAGCTTTGGACATGCTTACATCTAGGTTAGAGCGTAAAGCTATTAC
* *
25884683 ATCTCGGGTAGAGCTTTGGACATGCTTACATCTCGGTTAGAGCGTAAAGCTATTAC
1 AGCTCGGGTAGAGCTTTGGACATGCTTACATCTAGGTTAGAGCGTAAAGCTATTAC
*
25884739 AGCTCAGGTAGAGCTTTGG
1 AGCTCGGGTAGAGCTTTGG
25884758 TTTGCTTAAG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (56 bp):
AGCTCGGGTAGAGCTTTGGACATGCTTACATCTAGGTTAGAGCGTAAAGCTATTAC
Found at i:25884790 original size:55 final size:56
Alignment explanation
Indices: 25884627--25884799 Score: 226
Period size: 56 Copynumber: 3.1 Consensus size: 56
25884617 GTTCATCTAT
* *
25884627 AGCTCGGGTAGAGCTTTGGACATGCTTACATCTAGGTTAGAGCGTAAAGCTATTAC
1 AGCTCAGGTAGAGCTTTGGACATGCTTACATCTCGGTTAGAGCGTAAAGCTATTAC
* *
25884683 ATCTCGGGTAGAGCTTTGGACATGCTTACATCTCGGTTAGAGCGTAAAGCTATTAC
1 AGCTCAGGTAGAGCTTTGGACATGCTTACATCTCGGTTAGAGCGTAAAGCTATTAC
** * * *
25884739 AGCTCAGGTAGAGCTTTGG-TTTGCTTA-AGTCTCGATTAGA-CTGTAAGGCTATTTC
1 AGCTCAGGTAGAGCTTTGGACATGCTTACA-TCTCGGTTAGAGC-GTAAAGCTATTAC
25884794 AGCTCA
1 AGCTCA
25884800 AGAGGAGCGT
Statistics
Matches: 106, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
54 2 0.02
55 33 0.31
56 71 0.67
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (56 bp):
AGCTCAGGTAGAGCTTTGGACATGCTTACATCTCGGTTAGAGCGTAAAGCTATTAC
Found at i:25888260 original size:16 final size:18
Alignment explanation
Indices: 25888234--25888266 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
25888224 TTAATTTAAC
25888234 TAAATTAATTT-CTCAAT
1 TAAATTAATTTGCTCAAT
25888251 TAAA-TAATTTGCTCAA
1 TAAATTAATTTGCTCAA
25888267 CCTAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (18 bp):
TAAATTAATTTGCTCAAT
Found at i:25888893 original size:76 final size:77
Alignment explanation
Indices: 25888766--25888909 Score: 220
Period size: 76 Copynumber: 1.9 Consensus size: 77
25888756 GACCTTATCC
* * *
25888766 TTAATCTCTTTAGGATAATAAATGTTCTCCCAATGTGATCCTATTTTATCTCAT-AGTAAGCATT
1 TTAATCTCTTTAGGATAATAAATATTCTCCCAATATGATCCTATTTTATCTCATGA-TAACCATT
25888830 ACATAGGATATTT
65 ACATAGGATATTT
**
25888843 TTAATCTCTTT-GGATAATATCTATTCTCCCAATATGATCCTATTTTATCTCATGATAACCATTA
1 TTAATCTCTTTAGGATAATAAATATTCTCCCAATATGATCCTATTTTATCTCATGATAACCATTA
25888907 CAT
66 CAT
25888910 CTTCCTTCAC
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
76 49 0.80
77 12 0.20
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (77 bp):
TTAATCTCTTTAGGATAATAAATATTCTCCCAATATGATCCTATTTTATCTCATGATAACCATTA
CATAGGATATTT
Found at i:25889550 original size:20 final size:17
Alignment explanation
Indices: 25889502--25889550 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 17
25889492 ACAAGATAAT
25889502 TATTAAATTAATTTTAA
1 TATTAAATTAATTTTAA
25889519 TATTAAGA-TAATCAATTTAA
1 TATTAA-ATTAAT---TTTAA
25889539 TATTAAATTAAT
1 TATTAAATTAAT
25889551 AAACTACCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
17 10 0.37
18 1 0.04
19 1 0.04
20 15 0.56
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
TATTAAATTAATTTTAA
Found at i:25903614 original size:21 final size:21
Alignment explanation
Indices: 25903590--25903640 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
25903580 ACAAAGCCAA
* * *
25903590 ATGCACCCACATCGGAATCAG
1 ATGCAACCACACCAGAATCAG
*
25903611 ATGCAACCACACCAGAATCGG
1 ATGCAACCACACCAGAATCAG
25903632 ATGCAACCA
1 ATGCAACCA
25903641 TAACAATCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.33, G:0.18, T:0.12
Consensus pattern (21 bp):
ATGCAACCACACCAGAATCAG
Found at i:25921164 original size:16 final size:17
Alignment explanation
Indices: 25921133--25921165 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
25921123 ACTCATGATT
25921133 ATGAAGAGAAAAAGAAGG
1 ATGAAGAG-AAAAGAAGG
25921151 ATGAAGAG-AAAGAAG
1 ATGAAGAGAAAAGAAG
25921166 CTGAGAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.61, C:0.00, G:0.33, T:0.06
Consensus pattern (17 bp):
ATGAAGAGAAAAGAAGG
Found at i:25932653 original size:17 final size:17
Alignment explanation
Indices: 25932605--25932668 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 17
25932595 AGCGTGATCA
* **
25932605 ATTGTCATCGCATTCCC
1 ATTGTCATTGCATTTTC
*
25932622 ATTGTCATTACATTTTC
1 ATTGTCATTGCATTTTC
25932639 ATTGTCATTGCATTTT-
1 ATTGTCATTGCATTTTC
* *
25932655 AGTGTTATTGCATT
1 ATTGTCATTGCATT
25932669 AGGGATAATG
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
16 12 0.30
17 28 0.70
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.48
Consensus pattern (17 bp):
ATTGTCATTGCATTTTC
Found at i:25937712 original size:16 final size:16
Alignment explanation
Indices: 25937679--25937711 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
25937669 ATAGAAGTAT
*
25937679 AATAAAATATTAACAA
1 AATAAAATATTAAAAA
25937695 AATAAAA-ATTAAAAA
1 AATAAAATATTAAAAA
25937710 AA
1 AA
25937712 AAGAGATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (16 bp):
AATAAAATATTAAAAA
Found at i:25938866 original size:6 final size:6
Alignment explanation
Indices: 25938855--25938880 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
25938845 AGATAAACAA
25938855 GAAATG GAAATG GAAATG GAAATG GA
1 GAAATG GAAATG GAAATG GAAATG GA
25938881 GTTTGTAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.35, T:0.15
Consensus pattern (6 bp):
GAAATG
Found at i:25939271 original size:6 final size:6
Alignment explanation
Indices: 25939262--25939299 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
25939252 TTTTTAACAA
25939262 ATAATT ATAAATT A-AATT ATAATT ATAATT ATAATT AT
1 ATAATT AT-AATT ATAATT ATAATT ATAATT ATAATT AT
25939300 CATATTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 5 0.17
6 20 0.67
7 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
ATAATT
Found at i:25939691 original size:46 final size:46
Alignment explanation
Indices: 25939624--25939711 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
25939614 TATATATTAG
* *
25939624 GATATTATTATGGGATATTATCTCTAAGCAATTTGATTCCTAATAA
1 GATATTATTATGAGATATTATCTCTAAGCAATTTAATTCCTAATAA
* *
25939670 GATATTATTATGAGATATTATCTTTTAGCAATTTAATTCCTA
1 GATATTATTATGAGATATTATCTCTAAGCAATTTAATTCCTA
25939712 CGTAACTACT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.44
Consensus pattern (46 bp):
GATATTATTATGAGATATTATCTCTAAGCAATTTAATTCCTAATAA
Found at i:25953584 original size:56 final size:56
Alignment explanation
Indices: 25953493--25953702 Score: 260
Period size: 56 Copynumber: 3.8 Consensus size: 56
25953483 GGGTTGTTAG
* * * *
25953493 GATATTATTATGGGATATAATCTTTTAGCAATTTGATTTCTAATGGGATATTATAT
1 GATATTATTATGAGATATTATCTCTTAGCAATTTGATTTCTAATGGGATATTATAA
* * * * *
25953549 GATAATATCATGAGATATTATCTCTTAGTAATTTGATTCCTGATGGGATATTATAA
1 GATATTATTATGAGATATTATCTCTTAGCAATTTGATTTCTAATGGGATATTATAA
* * ** * *
25953605 GATATTATTACGGGATATTATCTCTTAGTGATTTGA-TTCTTGATGGGATATTATAC
1 GATATTATTATGAGATATTATCTCTTAGCAATTTGATTTC-TAATGGGATATTATAA
*
25953661 GATATTATTATGAGATATTATCTTTTAGCAATTTGATTTCTA
1 GATATTATTATGAGATATTATCTCTTAGCAATTTGATTTCTA
25953703 CGTAACTACT
Statistics
Matches: 130, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
55 2 0.02
56 125 0.96
57 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (56 bp):
GATATTATTATGAGATATTATCTCTTAGCAATTTGATTTCTAATGGGATATTATAA
Found at i:25953694 original size:112 final size:112
Alignment explanation
Indices: 25953493--25953698 Score: 297
Period size: 112 Copynumber: 1.8 Consensus size: 112
25953483 GGGTTGTTAG
* * *
25953493 GATATTATTATGGGATATAATCTTTTAGCAATTTGATTTCTAATGGGATATTATATGATAATATC
1 GATATTATTACGGGATATAATCTCTTAGCAATTTGATTTCTAATGGGATATTATACGATAATATC
*
25953558 ATGAGATATTATCTCTTAGTAATTTGATTCCTGATGGGATATTATAA
66 ATGAGATATTATCTCTTAGCAATTTGATTCCTGATGGGATATTATAA
* ** * *
25953605 GATATTATTACGGGATATTATCTCTTAGTGATTTGA-TTCTTGATGGGATATTATACGATATTAT
1 GATATTATTACGGGATATAATCTCTTAGCAATTTGATTTC-TAATGGGATATTATACGATAATAT
* *
25953669 TATGAGATATTATCTTTTAGCAATTTGATT
65 CATGAGATATTATCTCTTAGCAATTTGATT
25953699 TCTACGTAAC
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
111 3 0.04
112 79 0.96
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.45
Consensus pattern (112 bp):
GATATTATTACGGGATATAATCTCTTAGCAATTTGATTTCTAATGGGATATTATACGATAATATC
ATGAGATATTATCTCTTAGCAATTTGATTCCTGATGGGATATTATAA
Found at i:25955104 original size:20 final size:20
Alignment explanation
Indices: 25955076--25955115 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
25955066 CTCTAATCAA
*
25955076 AATCTCTAAAAAGTAGCTAT
1 AATCCCTAAAAAGTAGCTAT
* *
25955096 AATCCCTAAAGATTAGCTAT
1 AATCCCTAAAAAGTAGCTAT
25955116 TCAACGTTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.30
Consensus pattern (20 bp):
AATCCCTAAAAAGTAGCTAT
Found at i:25957898 original size:52 final size:52
Alignment explanation
Indices: 25957711--25957945 Score: 282
Period size: 52 Copynumber: 4.5 Consensus size: 52
25957701 GAATAAGGGG
* * *
25957711 CCGATAACTAAGTGTCATCGTGAGTACATGAATCCTTCACGGATTATACGGT
1 CCGATGACTAAGTGTCATCGTGAGTACATGAATCCTTCACAGATTATAAGGT
*
25957763 CCGATGACTAAGTGTCATCGTG-GCTGCATGAATCCTTCAC-GAATTATAAGGT
1 CCGATGACTAAGTGTCATCGTGAG-TACATGAATCCTTCACAG-ATTATAAGGT
* * *
25957815 CCGATGATTAAGTGTCATCATG-GCTGCATGAATCCTTCACAGATTATAAGGT
1 CCGATGACTAAGTGTCATCGTGAG-TACATGAATCCTTCACAGATTATAAGGT
* * **
25957867 CCGATGACTAAGTGTCATCGTGAGTATATGAATTCCTTTACAGAACA-AGAGGT
1 CCGATGACTAAGTGTCATCGTGAGTACATGAA-TCCTTCACAGATTATA-AGGT
25957920 CCGATGACTATA-TGTCATCGTGAGTA
1 CCGATGACTA-AGTGTCATCGTGAGTA
25957946 TTAAATGAAA
Statistics
Matches: 164, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
51 2 0.01
52 120 0.73
53 41 0.25
54 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (52 bp):
CCGATGACTAAGTGTCATCGTGAGTACATGAATCCTTCACAGATTATAAGGT
Found at i:25957985 original size:60 final size:61
Alignment explanation
Indices: 25957894--25958011 Score: 157
Period size: 60 Copynumber: 2.0 Consensus size: 61
25957884 TCGTGAGTAT
* * *
25957894 ATGAATTCCTTTACAGAACAAGAGGTCCGATGACTATATGTCATCGTGAGTATTAAATGAA
1 ATGAATTCCATTACAGAACAAGAGGTCCGATGACTATATGTCATCATGAGTATCAAATGAA
* ** * *
25957955 ATGAATTCCATTACGGATTAAG-GGTCCGATGACTTTGTGTCATCATGAGTATCAAAT
1 ATGAATTCCATTACAGAACAAGAGGTCCGATGACTATATGTCATCATGAGTATCAAAT
25958012 ACGAGTTGAG
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
60 31 0.63
61 18 0.37
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (61 bp):
ATGAATTCCATTACAGAACAAGAGGTCCGATGACTATATGTCATCATGAGTATCAAATGAA
Found at i:25966078 original size:19 final size:19
Alignment explanation
Indices: 25966038--25966084 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
25966028 TAAATCATGC
* *
25966038 AAATTAAATGCCAAGAATA
1 AAATTAAATGACAAAAATA
25966057 AAATT-AATGACAAAAATGA
1 AAATTAAATGACAAAAAT-A
*
25966076 AAAATAAAT
1 AAATTAAAT
25966085 AAATAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 10 0.43
19 10 0.43
20 3 0.13
ACGTcount: A:0.64, C:0.06, G:0.09, T:0.21
Consensus pattern (19 bp):
AAATTAAATGACAAAAATA
Found at i:25966157 original size:22 final size:23
Alignment explanation
Indices: 25966119--25966170 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 23
25966109 TTTAATTTTT
25966119 TTAAAAAAATAAGAAGATTGAAA
1 TTAAAAAAATAAGAAGATTGAAA
* *
25966142 TTAAAAAAATAA-AAGATTTAAT
1 TTAAAAAAATAAGAAGATTGAAA
25966164 TTAAAAA
1 TTAAAAA
25966171 CAGGAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (23 bp):
TTAAAAAAATAAGAAGATTGAAA
Found at i:25967329 original size:4 final size:4
Alignment explanation
Indices: 25967308--25967357 Score: 52
Period size: 4 Copynumber: 13.0 Consensus size: 4
25967298 TGTATTTACT
* *
25967308 TAAA T-AA TAAA TAGA TAAA TAAA TAAA -AACA -AAA GAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA-A TAAA TAAA TAAA TAAA
25967354 TAAA
1 TAAA
25967358 GTTAAAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
3 6 0.15
4 34 0.85
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (4 bp):
TAAA
Found at i:25968008 original size:79 final size:79
Alignment explanation
Indices: 25967897--25968484 Score: 838
Period size: 79 Copynumber: 7.4 Consensus size: 79
25967887 ATAGCTTTAG
* *** *
25967897 GGGTAAAAAATTGGATTGCTTCAATCTGCCCCATGGTCGAAATAAGAGATCGGATGGTTTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
*
25967962 CTGCCCTCTAGTTA
66 CTACCCTCTAGTTA
* *
25967976 GGGTAAAATATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGATATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
*
25968041 CTGCCCTCTAGTTA
66 CTACCCTCTAGTTA
*
25968055 GGGTAAAAGATTGGATTGCTTCAATCTACCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
*
25968120 CTACCCTCTTGTTA
66 CTACCCTCTAGTTA
* ** *
25968134 GGGTAAAAGATTGGA-TGTTTCAATCTGCCCCATGGTTAGGGTAAGAGATGGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
*
25968198 CTACACTCTAGTTA
66 CTACCCTCTAGTTA
* * *** * *
25968212 GGGTAAAAGATTGGATTGCTTTAATCTACTTTATGGTCGAGGTAAGAGATTGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
*
25968277 CTACCCTCTGGTTA
66 CTACCCTCTAGTTA
* * * *
25968291 GGTTAAAAGATTGGATGGTCTTTAATCTGCCCTCATGGTCGGGGTAAGAGATCAGATGGTCTTCA
1 GGGTAAAAGATTGGATTG-CTTCAATCTGCCC-CATGGTCGGGGTAAGAGATCGGATGGTCTTCA
*
25968356 ATCTACCCTCTAATTA
64 ATCTACCCTCTAGTTA
* *
25968372 GGGTAAAAGATTGGATTGTCTTCAATCTGCCCCATGATAGGGGTAAGAGATCGGATGGTCTTCAA
1 GGGTAAAAGATTGGATTG-CTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAA
25968437 TCTACCCTCTAGTTA
65 TCTACCCTCTAGTTA
* *
25968452 GGGTAAAAGATTAGA-TGCTTCAATCAGCCCCAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCAT
25968485 TCTATTGTAA
Statistics
Matches: 456, Mismatches: 50, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
78 86 0.19
79 231 0.51
80 68 0.15
81 71 0.16
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (79 bp):
GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
CTACCCTCTAGTTA
Found at i:25968045 original size:40 final size:40
Alignment explanation
Indices: 25967897--25968484 Score: 429
Period size: 40 Copynumber: 14.9 Consensus size: 40
25967887 ATAGCTTTAG
* * * *
25967897 GGGTAAAAAATTGGATTG-CTTCAATCTGCCCCATGG-TC
1 GGGTAAGAGATTGGATGGTCTTCAATCTGCCCCATGGTTA
** * * *
25967935 GAAATAAGAGATCGGATGGTTTTCAATCTGCCCTC-TAGTTA
1 G-GGTAAGAGATTGGATGGTCTTCAATCTGCCC-CATGGTTA
* * * **
25967976 GGGTAAAATATTGGATTG-CTTCAATCTGCCCCATGGTCG
1 GGGTAAGAGATTGGATGGTCTTCAATCTGCCCCATGGTTA
* * *
25968015 GGGTAAGATATCGGATGGTCTTCAATCTGCCCTC-TAGTTA
1 GGGTAAGAGATTGGATGGTCTTCAATCTGCCC-CATGGTTA
* * * **
25968055 GGGTAAAAGATTGGATTG-CTTCAATCTACCCCATGGTCG
1 GGGTAAGAGATTGGATGGTCTTCAATCTGCCCCATGGTTA
* * *
25968094 GGGTAAGAGATCGGATGGTCTTCAATCTACCCTC-TTGTTA
1 GGGTAAGAGATTGGATGGTCTTCAATCTGCCC-CATGGTTA
*
25968134 GGGTAAAAGATTGGAT-GT-TTCAATCTGCCCCATGGTTA
1 GGGTAAGAGATTGGATGGTCTTCAATCTGCCCCATGGTTA
* * * *
25968172 GGGTAAGAGATGGGATGGTCTTCAATCTACACTC-TAGTTA
1 GGGTAAGAGATTGGATGGTCTTCAATCTGC-CCCATGGTTA
* * * * *** *
25968212 GGGTAAAAGATTGGATTG-CTTTAATCTACTTTATGG-TC
1 GGGTAAGAGATTGGATGGTCTTCAATCTGCCCCATGGTTA
*
25968250 GAGGTAAGAGATTGGATGGTCTTCAATCTACCCTC-TGGTTA
1 G-GGTAAGAGATTGGATGGTCTTCAATCTGCCC-CATGGTTA
* * * **
25968291 GGTTAAAAGATTGGATGGTCTTTAATCTGCCCTCATGGTCG
1 GGGTAAGAGATTGGATGGTCTTCAATCTGCCC-CATGGTTA
** * **
25968332 GGGTAAGAGATCAGATGGTCTTCAATCTACCCTC-TAATTA
1 GGGTAAGAGATTGGATGGTCTTCAATCTGCCC-CATGGTTA
* * *
25968372 GGGTAAAAGATTGGATTGTCTTCAATCTGCCCCAT-GATA
1 GGGTAAGAGATTGGATGGTCTTCAATCTGCCCCATGGTTA
* * *
25968411 GGGGTAAGAGATCGGATGGTCTTCAATCTACCCTC-TAGTTA
1 -GGGTAAGAGATTGGATGGTCTTCAATCTGCCC-CATGGTTA
* * *
25968452 GGGTAAAAGATTAGAT-G-CTTCAATCAGCCCCAT
1 GGGTAAGAGATTGGATGGTCTTCAATCTGCCCCAT
25968485 TCTATTGTAA
Statistics
Matches: 429, Mismatches: 96, Indels: 50
0.75 0.17 0.09
Matches are distributed among these distances:
37 2 0.00
38 48 0.11
39 106 0.25
40 228 0.53
41 45 0.10
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (40 bp):
GGGTAAGAGATTGGATGGTCTTCAATCTGCCCCATGGTTA
Found at i:25968239 original size:157 final size:157
Alignment explanation
Indices: 25967897--25968484 Score: 843
Period size: 157 Copynumber: 3.7 Consensus size: 157
25967887 ATAGCTTTAG
* * ** *
25967897 GGGTAAAAAATTGGATTGCTTCAATCTGCCCCATGGTCGAAATAAGAGATCGGATGGTTTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTACCCCATGGTCGAGGTAAGAGATCGGATGGTCTTCAAT
* * *
25967962 CTGCCCTCTAGTTAGGGTAAAATATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGATATC
66 CTACCCTCTAGTTAGGGTAAAAGATTGGA-TGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATC
*
25968027 GGATGGTCTTCAATCTGCCCTCTAGTTA
130 GGATGGTCTTCAATCTACCCTCTAGTTA
*
25968055 GGGTAAAAGATTGGATTGCTTCAATCTACCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTACCCCATGGTCGAGGTAAGAGATCGGATGGTCTTCAAT
* * ** *
25968120 CTACCCTCTTGTTAGGGTAAAAGATTGGATGTTTCAATCTGCCCCATGGTTAGGGTAAGAGATGG
66 CTACCCTCTAGTTAGGGTAAAAGATTGGATGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCG
*
25968185 GATGGTCTTCAATCTACACTCTAGTTA
131 GATGGTCTTCAATCTACCCTCTAGTTA
* *** *
25968212 GGGTAAAAGATTGGATTGCTTTAATCTACTTTATGGTCGAGGTAAGAGATTGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTACCCCATGGTCGAGGTAAGAGATCGGATGGTCTTCAAT
* * *
25968277 CTACCCTCTGGTTAGGTTAAAAGATTGGATGGTCTTTAATCTGCCCTCATGGTCGGGGTAAGAGA
66 CTACCCTCTAGTTAGGGTAAAAGATTGGAT-G-CTTCAATCTGCCC-CATGGTCGGGGTAAGAGA
* *
25968342 TCAGATGGTCTTCAATCTACCCTCTAATTA
128 TCGGATGGTCTTCAATCTACCCTCTAGTTA
* * * *
25968372 GGGTAAAAGATTGGATTGTCTTCAATCTGCCCCATGATAGGGGTAAGAGATCGGATGGTCTTCAA
1 GGGTAAAAGATTGGATTG-CTTCAATCTACCCCATGGTCGAGGTAAGAGATCGGATGGTCTTCAA
* *
25968437 TCTACCCTCTAGTTAGGGTAAAAGATTAGATGCTTCAATCAGCCCCAT
65 TCTACCCTCTAGTTAGGGTAAAAGATTGGATGCTTCAATCTGCCCCAT
25968485 TCTATTGTAA
Statistics
Matches: 380, Mismatches: 46, Indels: 8
0.88 0.11 0.02
Matches are distributed among these distances:
157 143 0.38
158 89 0.23
159 22 0.06
160 61 0.16
161 65 0.17
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (157 bp):
GGGTAAAAGATTGGATTGCTTCAATCTACCCCATGGTCGAGGTAAGAGATCGGATGGTCTTCAAT
CTACCCTCTAGTTAGGGTAAAAGATTGGATGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCG
GATGGTCTTCAATCTACCCTCTAGTTA
Found at i:25969138 original size:19 final size:20
Alignment explanation
Indices: 25969116--25969161 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
25969106 AATATTAATA
25969116 AAATATTAGTCAAAA-TAAC
1 AAATATTAGTCAAAACTAAC
* * *
25969135 AAATGTTGGTCAAAACTAGC
1 AAATATTAGTCAAAACTAAC
25969155 AAATATT
1 AAATATT
25969162 GATCAAGAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.28
Consensus pattern (20 bp):
AAATATTAGTCAAAACTAAC
Found at i:25969167 original size:20 final size:19
Alignment explanation
Indices: 25969116--25969167 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
25969106 AATATTAATA
25969116 AAATATT-AGTCAAAATAAC
1 AAATATTGA-TCAAAATAAC
* * *
25969135 AAATGTTGGTCAAAACTAGC
1 AAATATTGATCAAAA-TAAC
25969155 AAATATTGATCAA
1 AAATATTGATCAA
25969168 GAATTGTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.27
Consensus pattern (19 bp):
AAATATTGATCAAAATAAC
Found at i:25986717 original size:6 final size:6
Alignment explanation
Indices: 25986695--25986753 Score: 66
Period size: 6 Copynumber: 9.3 Consensus size: 6
25986685 CATTGACCTG
*
25986695 TTGACT TTGA-T AGTTGACT TTGACT TTGATCA TTGACT TTGACT TTGACT
1 TTGACT TTGACT --TTGACT TTGACT TTGA-CT TTGACT TTGACT TTGACT
25986745 GTTGACT TT
1 -TTGACT TT
25986754 TCTTTAACAA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
5 1 0.02
6 29 0.63
7 15 0.33
8 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (6 bp):
TTGACT
Found at i:25986719 original size:19 final size:19
Alignment explanation
Indices: 25986695--25986753 Score: 86
Period size: 19 Copynumber: 3.1 Consensus size: 19
25986685 CATTGACCTG
25986695 TTGACTTTGATAGTTGACT
1 TTGACTTTGATAGTTGACT
25986714 TTGACTTTGATCA-TTGACT
1 TTGACTTTGAT-AGTTGACT
25986733 TTGACTTTGACT-GTTGACT
1 TTGACTTTGA-TAGTTGACT
25986752 TT
1 TT
25986754 TCTTTAACAA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
19 35 0.95
20 2 0.05
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (19 bp):
TTGACTTTGATAGTTGACT
Found at i:25986751 original size:13 final size:13
Alignment explanation
Indices: 25986687--25986753 Score: 77
Period size: 13 Copynumber: 5.2 Consensus size: 13
25986677 ACTTGACCCA
25986687 TTGACCTGTTGACT
1 TTGA-CTGTTGACT
25986701 TTGA-TAGTTGACT
1 TTGACT-GTTGACT
*
25986714 TTGACT-TTGATCA
1 TTGACTGTTGA-CT
25986727 TTGACT-TTGACT
1 TTGACTGTTGACT
25986739 TTGACTGTTGACT
1 TTGACTGTTGACT
25986752 TT
1 TT
25986754 TCTTTAACAA
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
12 12 0.26
13 30 0.64
14 5 0.11
ACGTcount: A:0.18, C:0.15, G:0.19, T:0.48
Consensus pattern (13 bp):
TTGACTGTTGACT
Found at i:25991357 original size:2 final size:2
Alignment explanation
Indices: 25991350--25991387 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
25991340 GTTGTGATAA
25991350 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25991388 GAAAGAATAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25994713 original size:39 final size:36
Alignment explanation
Indices: 25994638--25994713 Score: 82
Period size: 36 Copynumber: 2.0 Consensus size: 36
25994628 TGTGGTTGCC
* *
25994638 TTGGCTTTCTTTTTCTTCTTCTTTGGGCGCTCCTCT
1 TTGGATTTCTTTTTCTTCTTCTTTGCGCGCTCCTCT
*
25994674 TTGGATTTCTTCTTTGCTT-TTCATTTGCGCTGCTTCTCT
1 TTGGATTTCTT-TTT-CTTCTTC-TTTGCGC-GCTCCTCT
25994713 T
1 T
25994714 GTGGTTCAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
36 10 0.30
37 6 0.18
38 9 0.27
39 8 0.24
ACGTcount: A:0.03, C:0.25, G:0.16, T:0.57
Consensus pattern (36 bp):
TTGGATTTCTTTTTCTTCTTCTTTGCGCGCTCCTCT
Found at i:25995002 original size:20 final size:18
Alignment explanation
Indices: 25994977--25995023 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 18
25994967 TCCTTTTCAT
*
25994977 TCTTCTTCTCTTCCTCCTTC
1 TCTTCTTCACTTCCT--TTC
*
25994997 TCTTCTTCAGTTCCTTTC
1 TCTTCTTCACTTCCTTTC
25995015 TCTTCTTCA
1 TCTTCTTCA
25995024 GGGTTTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 12 0.48
20 13 0.52
ACGTcount: A:0.04, C:0.38, G:0.02, T:0.55
Consensus pattern (18 bp):
TCTTCTTCACTTCCTTTC
Found at i:25995038 original size:21 final size:17
Alignment explanation
Indices: 25994991--25995024 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
25994981 CTTCTCTTCC
25994991 TCCTTCTCTTCTTCAGT
1 TCCTTCTCTTCTTCAGT
25995008 TCCTTTCTCTTCTTCAG
1 TCC-TTCTCTTCTTCAG
25995025 GGTTTTCCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.06, C:0.35, G:0.06, T:0.53
Consensus pattern (17 bp):
TCCTTCTCTTCTTCAGT
Found at i:25996726 original size:20 final size:20
Alignment explanation
Indices: 25996701--25996749 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
25996691 CCAACGATTG
*
25996701 GGGATGATTGGAGATCAACC
1 GGGATGATTAGAGATCAACC
*
25996721 GGGATGATTAGAGATCAATC
1 GGGATGATTAGAGATCAACC
*
25996741 GGGGTGATT
1 GGGATGATT
25996750 CTTGCCTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.10, G:0.37, T:0.24
Consensus pattern (20 bp):
GGGATGATTAGAGATCAACC
Found at i:26004675 original size:19 final size:19
Alignment explanation
Indices: 26004640--26004693 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 19
26004630 TTAACCTGAC
26004640 CCATTGACTTATTGACTTTGA
1 CCATTGAC-T-TTGACTTTGA
*
26004661 -TAGTTGACTTTGACTTTGA
1 CCA-TTGACTTTGACTTTGA
26004680 CCATTGACTTTGAC
1 CCATTGACTTTGAC
26004694 CGTTGACTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 21 0.72
20 3 0.10
21 5 0.17
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.43
Consensus pattern (19 bp):
CCATTGACTTTGACTTTGA
Found at i:26004686 original size:13 final size:13
Alignment explanation
Indices: 26004670--26004703 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
26004660 ATAGTTGACT
26004670 TTGACTTTGACCA
1 TTGACTTTGACCA
*
26004683 TTGACTTTGACCG
1 TTGACTTTGACCA
26004696 TTGACTTT
1 TTGACTTT
26004704 TCTTTGACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (13 bp):
TTGACTTTGACCA
Found at i:26004686 original size:32 final size:31
Alignment explanation
Indices: 26004650--26004711 Score: 88
Period size: 32 Copynumber: 2.0 Consensus size: 31
26004640 CCATTGACTT
*
26004650 ATTGACTTTGATAGTTGACTTTGACTTTGACC
1 ATTGACTTTGACAGTTGACTTT-ACTTTGACC
* *
26004682 ATTGACTTTGACCGTTGACTTTTCTTTGAC
1 ATTGACTTTGACAGTTGACTTTACTTTGAC
26004712 AAACTCTATC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 7 0.26
32 20 0.74
ACGTcount: A:0.19, C:0.18, G:0.18, T:0.45
Consensus pattern (31 bp):
ATTGACTTTGACAGTTGACTTTACTTTGACC
Found at i:26010891 original size:19 final size:20
Alignment explanation
Indices: 26010848--26010895 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
26010838 TTTAATTTTT
26010848 TTTTAAAAAAGAAGATTGAA
1 TTTTAAAAAAGAAGATTGAA
* *
26010868 -ATTAAAAAA-AAGATTTAA
1 TTTTAAAAAAGAAGATTGAA
26010886 TTTTAAAAAA
1 TTTTAAAAAA
26010896 TATTTTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.31
Consensus pattern (20 bp):
TTTTAAAAAAGAAGATTGAA
Found at i:26010893 original size:18 final size:18
Alignment explanation
Indices: 26010848--26010895 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
26010838 TTTAATTTTT
26010848 TTTTAAAAAAGAAGATTGAA
1 TTTT-AAAAA-AAGATTGAA
* * *
26010868 ATTAAAAAAAAGATTTAA
1 TTTTAAAAAAAGATTGAA
26010886 TTTTAAAAAA
1 TTTTAAAAAA
26010896 TATTTTAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
18 16 0.70
19 5 0.22
20 2 0.09
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
TTTTAAAAAAAGATTGAA
Found at i:26012008 original size:4 final size:4
Alignment explanation
Indices: 26011991--26012027 Score: 56
Period size: 4 Copynumber: 9.0 Consensus size: 4
26011981 TGTATTTATT
*
26011991 TAAA TAATA AAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAA-A TAAA TAAA TAAA TAAA TAAA TAAA TAAA
26012028 GTTAAAAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 27 0.90
5 3 0.10
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:26016596 original size:13 final size:15
Alignment explanation
Indices: 26016578--26016609 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
26016568 ATATGTGAAT
26016578 AAATAT-AATGG-TA
1 AAATATGAATGGATA
26016591 AAATATGAATGGATA
1 AAATATGAATGGATA
26016606 AAAT
1 AAAT
26016610 TGACAGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 5 0.29
15 6 0.35
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (15 bp):
AAATATGAATGGATA
Found at i:26027916 original size:14 final size:14
Alignment explanation
Indices: 26027893--26027927 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
26027883 AGAATTATAC
26027893 AATA-TAACAACAA
1 AATAGTAACAACAA
*
26027906 AATAGTAACAACAT
1 AATAGTAACAACAA
26027920 AATAGTAA
1 AATAGTAA
26027928 ATAGTAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.63, C:0.11, G:0.06, T:0.20
Consensus pattern (14 bp):
AATAGTAACAACAA
Found at i:26039351 original size:12 final size:12
Alignment explanation
Indices: 26039334--26039366 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
26039324 TAAAAAGCAT
26039334 AAAATAAAATAG
1 AAAATAAAATAG
*
26039346 AAAATAAGATAG
1 AAAATAAAATAG
26039358 AAAATAAAA
1 AAAATAAAA
26039367 GTAAGATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (12 bp):
AAAATAAAATAG
Found at i:26047520 original size:24 final size:24
Alignment explanation
Indices: 26047488--26047537 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
26047478 AAGAGCAATA
26047488 AAAAGAGTTAGTTTTAAAAAGCAT
1 AAAAGAGTTAGTTTTAAAAAGCAT
26047512 AAAAGAGTTAGTTTTAAAAAGCAT
1 AAAAGAGTTAGTTTTAAAAAGCAT
26047536 AA
1 AA
26047538 GATTTTAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.04, G:0.16, T:0.28
Consensus pattern (24 bp):
AAAAGAGTTAGTTTTAAAAAGCAT
Found at i:26060757 original size:15 final size:15
Alignment explanation
Indices: 26060737--26060784 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
26060727 GGTTCTCCCA
*
26060737 ATCTTCCTAG-TATCC
1 ATCTTCATAGATAT-C
26060752 ATCTTCATAGATATC
1 ATCTTCATAGATATC
*
26060767 ATCTTCATAGATGTC
1 ATCTTCATAGATATC
26060782 ATC
1 ATC
26060785 ATTCTAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 27 0.90
16 3 0.10
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (15 bp):
ATCTTCATAGATATC
Found at i:26089519 original size:8 final size:8
Alignment explanation
Indices: 26089506--26089534 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
26089496 ATACATGTAT
26089506 TTTTATCA
1 TTTTATCA
26089514 TTTTATCA
1 TTTTATCA
26089522 TTTTATCA
1 TTTTATCA
26089530 TTTTA
1 TTTTA
26089535 GTCCTTAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (8 bp):
TTTTATCA
Found at i:26090489 original size:24 final size:23
Alignment explanation
Indices: 26090455--26090502 Score: 55
Period size: 24 Copynumber: 2.0 Consensus size: 23
26090445 TCACACTCTA
26090455 TCTCACCCCTTATT-TCTCC-TTT
1 TCTCACCCCTT-TTCTCTCCATTT
26090477 TCTCACCATCCTTTTCTCTCCATTT
1 TCTCACC--CCTTTTCTCTCCATTT
26090502 T
1 T
26090503 AGGTTTCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
22 7 0.32
23 2 0.09
24 9 0.41
25 4 0.18
ACGTcount: A:0.10, C:0.40, G:0.00, T:0.50
Consensus pattern (23 bp):
TCTCACCCCTTTTCTCTCCATTT
Found at i:26097225 original size:52 final size:52
Alignment explanation
Indices: 26097133--26097373 Score: 295
Period size: 52 Copynumber: 4.6 Consensus size: 52
26097123 ATTTCATTTA
** *
26097133 ATACTCACGATGACACATAGTCATCGGACCTCT-TGTTCCGTAAAGGAATCAT
1 ATACTCACGATGACACATAGTCATCGGACCT-TATAATCCGTAAAGGATTCAT
* * * *
26097185 ACACTCACGATGACACGTAGTCACCGAACCTTATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
* * * * * * *
26097237 ATACTCACTATTATAAATAGTCATTGAACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
* * ***
26097289 ATACTCACGATGACACATAGTCATTGGACCTCATAATCTACAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
26097341 ATACTCACGATGACACATAGTCATCGGACCTTA
1 ATACTCACGATGACACATAGTCATCGGACCTTA
26097374 GTCATTTATG
Statistics
Matches: 162, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
51 1 0.01
52 161 0.99
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
Found at i:26105983 original size:52 final size:52
Alignment explanation
Indices: 26105905--26106045 Score: 194
Period size: 52 Copynumber: 2.7 Consensus size: 52
26105895 TTCATTTAAT
* ** * *
26105905 ACTCATGATGACACATAGTCATCGGACCTC-TTGTTTCGTAAAGGAATCATAC
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCT-ATAAAGGAATCATAC
* *
26105957 ACTCACGATGACACATAGTCATCGGACCTCATAATCTATAAAGGATTCATAT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCTATAAAGGAATCATAC
*
26106009 ACTCACGATGACACATAGTCATTGGACCTCATAATCT
1 ACTCACGATGACACATAGTCATCGGACCTCATAATCT
26106046 GGACCTCATA
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 77 0.96
53 3 0.04
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (52 bp):
ACTCACGATGACACATAGTCATCGGACCTCATAATCTATAAAGGAATCATAC
Found at i:26106050 original size:14 final size:14
Alignment explanation
Indices: 26106031--26106058 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26106021 ACATAGTCAT
26106031 TGGACCTCATAATC
1 TGGACCTCATAATC
26106045 TGGACCTCATAATC
1 TGGACCTCATAATC
26106059 CGTAAAGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (14 bp):
TGGACCTCATAATC
Found at i:26106073 original size:118 final size:118
Alignment explanation
Indices: 26105941--26106234 Score: 498
Period size: 118 Copynumber: 2.5 Consensus size: 118
26105931 CCTCTTGTTT
* * * * *
26105941 CGTAAAGGAATCATACACTCACGATGACACATAGTCATCGGACCTCATAATCTATAAAGGATTCA
1 CGTAAAGGATTCATATACTTAGGATGACACATAGTCATCGGACCTCATAATCTGTAAAGGATTCA
* * *
26106006 TATACTCACGATGACACATAGTCATTGGACCTCATAATCTGGACCTCATAATC
66 TATACTCACGATGACACATAATCATCGGACCTCATAATCCGGACCTCATAATC
*
26106059 CGTAAAGGATTCATATACTTAGGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCA
1 CGTAAAGGATTCATATACTTAGGATGACACATAGTCATCGGACCTCATAATCTGTAAAGGATTCA
26106124 TATACTCACGATGACACATAATCATCGGACCTCATAATCCGGACCTCATAATC
66 TATACTCACGATGACACATAATCATCGGACCTCATAATCCGGACCTCATAATC
*
26106177 CGTAAAGGATTCATATACTTAGGATGACACATAGTCATCGAACCTCATAATCTGTAAA
1 CGTAAAGGATTCATATACTTAGGATGACACATAGTCATCGGACCTCATAATCTGTAAA
26106235 ATGACACATA
Statistics
Matches: 165, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
118 165 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (118 bp):
CGTAAAGGATTCATATACTTAGGATGACACATAGTCATCGGACCTCATAATCTGTAAAGGATTCA
TATACTCACGATGACACATAATCATCGGACCTCATAATCCGGACCTCATAATC
Found at i:26106086 original size:66 final size:66
Alignment explanation
Indices: 26105980--26106110 Score: 217
Period size: 66 Copynumber: 2.0 Consensus size: 66
26105970 CATAGTCATC
* *
26105980 GGACCTCATAATCTATAAAGGATTCATATACTCACGATGACACATAGTCATTGGACCTCATAATC
1 GGACCTCATAATCCATAAAGGATTCATATACTCACGATGACACATAGTCATCGGACCTCATAATC
26106045 T
66 T
* * *
26106046 GGACCTCATAATCCGTAAAGGATTCATATACTTAGGATGACACATAGTCATCGGACCTCATAATC
1 GGACCTCATAATCCATAAAGGATTCATATACTCACGATGACACATAGTCATCGGACCTCATAATC
26106111 CGTAAAGGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.27
Consensus pattern (66 bp):
GGACCTCATAATCCATAAAGGATTCATATACTCACGATGACACATAGTCATCGGACCTCATAATC
T
Found at i:26106124 original size:52 final size:52
Alignment explanation
Indices: 26106038--26106164 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
26106028 CATTGGACCT
* *
26106038 CATAATC-T-GGACCTCATAATCCGTAAAGGATTCATATACTTAGGATGACA
1 CATAATCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACA
*
26106088 CATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACA
1 CATAATCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACA
26106140 CATAATCATCGGACCTCATAATCCG
1 CATAATCATCGGACCTCATAATCCG
26106165 GACCTCATAA
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 6 0.08
51 1 0.01
52 64 0.90
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (52 bp):
CATAATCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACA
Found at i:26106167 original size:66 final size:66
Alignment explanation
Indices: 26106097--26106228 Score: 228
Period size: 66 Copynumber: 2.0 Consensus size: 66
26106087 ACATAGTCAT
*
26106097 CGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACACATAATCATCGGACCTCATAAT
1 CGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACACATAATCATCGAACCTCATAAT
26106162 C
66 C
* * *
26106163 CGGACCTCATAATCCGTAAAGGATTCATATACTTAGGATGACACATAGTCATCGAACCTCATAAT
1 CGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACACATAATCATCGAACCTCATAAT
26106228 C
66 C
26106229 TGTAAAATGA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (66 bp):
CGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGACACATAATCATCGAACCTCATAAT
C
Found at i:26106168 original size:14 final size:14
Alignment explanation
Indices: 26106149--26106178 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
26106139 ACATAATCAT
26106149 CGGACCTCATAATC
1 CGGACCTCATAATC
26106163 CGGACCTCATAATC
1 CGGACCTCATAATC
26106177 CG
1 CG
26106179 TAAAGGATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.37, G:0.17, T:0.20
Consensus pattern (14 bp):
CGGACCTCATAATC
Found at i:26106239 original size:35 final size:35
Alignment explanation
Indices: 26106200--26106269 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
26106190 TATACTTAGG
26106200 ATGACACATAGTCATCGAACCTCATAATCTGTAAA
1 ATGACACATAGTCATCGAACCTCATAATCTGTAAA
26106235 ATGACACATAGTCATCGAACCTCATAATCTGTAAA
1 ATGACACATAGTCATCGAACCTCATAATCTGTAAA
26106270 GGATTCATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (35 bp):
ATGACACATAGTCATCGAACCTCATAATCTGTAAA
Found at i:26106301 original size:52 final size:52
Alignment explanation
Indices: 26106238--26106360 Score: 194
Period size: 52 Copynumber: 2.4 Consensus size: 52
26106228 CTGTAAAATG
26106238 ACACATAGTCATCGAACCTCATAATCTGTAAAGGATTCATATACACACGATA
1 ACACATAGTCATCGAACCTCATAATCTGTAAAGGATTCATATACACACGATA
* * *
26106290 ACACATGGTCATC-AGACCTCATAATCTGTAAAGGATTCATATACTCACGATG
1 ACACATAGTCATCGA-ACCTCATAATCTGTAAAGGATTCATATACACACGATA
*
26106342 ACACATAGTCATCGGACCT
1 ACACATAGTCATCGAACCT
26106361 TAGTCATTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
51 1 0.02
52 63 0.98
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (52 bp):
ACACATAGTCATCGAACCTCATAATCTGTAAAGGATTCATATACACACGATA
Done.