Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 103 of 135
Found at i:31821377 original size:29 final size:28
Alignment explanation
Indices: 31821322--31821400 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 28
31821312 CTAATCTTTT
*
31821322 CAAAATTACATTTTTACCCCCTAAACTCCC
1 CAAAATTCCATTTTTA--CCCTAAACTCCC
**
31821352 CAAAATTCCATTTTTACCCTAAAACTTTC
1 CAAAATTCCATTTTTACCCT-AAACTCCC
*
31821381 AAAAATTACCA-TTTTACCCT
1 CAAAATT-CCATTTTTACCCT
31821401 CGAAAGTCCA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
28 4 0.09
29 21 0.49
30 18 0.42
ACGTcount: A:0.35, C:0.30, G:0.00, T:0.34
Consensus pattern (28 bp):
CAAAATTCCATTTTTACCCTAAACTCCC
Found at i:31821412 original size:29 final size:29
Alignment explanation
Indices: 31821380--31821592 Score: 116
Period size: 29 Copynumber: 7.3 Consensus size: 29
31821370 CTAAAACTTT
31821380 CAAAAATTACCATTTTACCCTCGAAAGTC
1 CAAAAATTACCATTTTACCCTCGAAAGTC
* * *
31821409 CAAAAACTTTA--TTTTTGA-CCTCGAAACTTT
1 CAAAAA--TTACCATTTT-ACCCTCGAAA-GTC
* *
31821439 CAAAAATTACCATTTTACCC-CCAGATGTC
1 CAAAAATTACCATTTTACCCTCGA-AAGTC
* * * *
31821468 CAAAAACT-CTATTTTTGACCC-CGAAACTTT
1 CAAAAATTACCA-TTTT-ACCCTCGAAA-GTC
* * * *
31821498 AAAAAATTACCGTTTTTCCCTCGAATGTC
1 CAAAAATTACCATTTTACCCTCGAAAGTC
*** *
31821527 CAAAAATT-CCATTTTTGACTCGAAACTTC
1 CAAAAATTACCATTTTACCCTCGAAA-GTC
* * *
31821556 CAAAAATTACCATTTTACCCACGGATGTC
1 CAAAAATTACCATTTTACCCTCGAAAGTC
31821585 CAAAAATT
1 CAAAAATT
31821593 CCGTTTTTGA
Statistics
Matches: 134, Mismatches: 35, Indels: 30
0.67 0.18 0.15
Matches are distributed among these distances:
28 18 0.13
29 65 0.49
30 47 0.35
31 4 0.03
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.32
Consensus pattern (29 bp):
CAAAAATTACCATTTTACCCTCGAAAGTC
Found at i:31821436 original size:59 final size:59
Alignment explanation
Indices: 31821353--31821691 Score: 340
Period size: 59 Copynumber: 5.8 Consensus size: 59
31821343 TAAACTCCCC
* *
31821353 AAAATTCCATTTTT-ACC-CTAAAACTTTCAAAAATTACCATTTTACCCTCGAAAGTCCA
1 AAAATTCCATTTTTGACCTC-GAAACTTTCAAAAATTACCATTTTACCCTCGAATGTCCA
* *
31821411 AAAACTT-TATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTACCC-CCAGATGTCCA
1 AAAA-TTCCATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTACCCTCGA-ATGTCCA
* * * * * *
31821470 AAAACTCTATTTTTGACCCCGAAACTTTAAAAAATTACCGTTTTTCCCTCGAATGTCCA
1 AAAATTCCATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTACCCTCGAATGTCCA
* * *
31821529 AAAATTCCATTTTTGA-CTCGAAACTTCCAAAAATTACCATTTTACCCACGGATGTCCA
1 AAAATTCCATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTACCCTCGAATGTCCA
* * * * **
31821587 AAAATTCCGTTTTTGATCTCG--ATTTTCCTAAAAATTACCATTTTACCC-CAAATGT-TT
1 AAAATTCCATTTTTGACCTCGAAACTTT-C-AAAAATTACCATTTTACCCTCGAATGTCCA
* * * *
31821644 AAAATAT-CATTTTTAACC-CTAAATTTTCAAAAATTACCATTTTCCCCT
1 AAAAT-TCCATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTACCCT
31821692 AAGAGCCTAA
Statistics
Matches: 237, Mismatches: 31, Indels: 27
0.80 0.11 0.09
Matches are distributed among these distances:
56 19 0.08
57 17 0.07
58 75 0.32
59 123 0.52
60 3 0.01
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.35
Consensus pattern (59 bp):
AAAATTCCATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTACCCTCGAATGTCCA
Found at i:31821600 original size:29 final size:30
Alignment explanation
Indices: 31821499--31821634 Score: 92
Period size: 29 Copynumber: 4.7 Consensus size: 30
31821489 CGAAACTTTA
31821499 AAAAATTACCGTTTTT-CCCTCGAATGTCC
1 AAAAATTACCGTTTTTACCCTCGAATGTCC
*
31821528 AAAAATT-CCATTTTTGA--CTCGAAACT-TCC
1 AAAAATTACCGTTTTT-ACCCTCG-AA-TGTCC
* * *
31821557 AAAAATTACC-ATTTTACCCACGGATGTCC
1 AAAAATTACCGTTTTTACCCTCGAATGTCC
* * *
31821586 AAAAATT-CCGTTTTTGA-TCTCGATTTTCC
1 AAAAATTACCGTTTTT-ACCCTCGAATGTCC
*
31821615 TAAAAATTACC-ATTTTACCC
1 -AAAAATTACCGTTTTTACCC
31821635 CAAATGTTTA
Statistics
Matches: 82, Mismatches: 12, Indels: 25
0.69 0.10 0.21
Matches are distributed among these distances:
28 15 0.18
29 46 0.56
30 19 0.23
31 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (30 bp):
AAAAATTACCGTTTTTACCCTCGAATGTCC
Found at i:31821691 original size:28 final size:29
Alignment explanation
Indices: 31821615--31821717 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 29
31821605 TCGATTTTCC
31821615 TAAAAATTACCATTTTACCCC-AAATGTT
1 TAAAAATTACCATTTTACCCCTAAATGTT
* *
31821643 T-AAAA-TATCATTTTTAACCCTAAAT-TT
1 TAAAAATTACCA-TTTTACCCCTAAATGTT
**
31821670 TCAAAAATTACCATTTT-CCCCTAAGA-GCC
1 T-AAAAATTACCATTTTACCCCTAA-ATGTT
31821699 T-AAAATTACCATTTTACCC
1 TAAAAATTACCATTTTACCC
31821718 ACGGGTATCC
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
26 4 0.07
27 29 0.48
28 14 0.23
29 10 0.16
30 4 0.07
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.36
Consensus pattern (29 bp):
TAAAAATTACCATTTTACCCCTAAATGTT
Found at i:31826323 original size:13 final size:14
Alignment explanation
Indices: 31826296--31826323 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
31826286 AGATTATAGC
31826296 ATTTCCTTAAAAAA
1 ATTTCCTTAAAAAA
31826310 ATTTCCTTAAAAAA
1 ATTTCCTTAAAAAA
31826324 CTAGGAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (14 bp):
ATTTCCTTAAAAAA
Found at i:31834709 original size:79 final size:79
Alignment explanation
Indices: 31834618--31834848 Score: 311
Period size: 79 Copynumber: 2.9 Consensus size: 79
31834608 TGTTAACAAC
* * *
31834618 AAAAATCAAATAAATTCTGTTGAATAGCAGGAATAAAATCTTGAAATAGAATTGTTCAATTGATT
1 AAAAATCGAATAAATTCTGTTGAATAGTAGGAATAAAATCCTGAAATAGAATTGTTCAATTGATT
*
31834683 TCTGTTTGGAAACA
66 TATGTTTGGAAACA
* * * * *
31834697 AAAAATCGAATAAATTCTGTTGAA-CGATAGAAATAAAATCCTAAAACAGAATTGTTTAATTGAT
1 AAAAATCGAATAAATTCTGTTGAATAG-TAGGAATAAAATCCTGAAATAGAATTGTTCAATTGAT
*
31834761 TTTTGTTTGGAAACA
65 TTATGTTTGGAAACA
* * * *
31834776 AAAAATCGAATAAATTCTGTTGAATCAATAGGAATAAAATCCCGAAATAGAATTATTCAATTAAT
1 AAAAATCGAATAAATTCTGTTGAAT-AGTAGGAATAAAATCCTGAAATAGAATTGTTCAATTGAT
31834841 TTATGTTT
65 TTATGTTT
31834849 ACAAAGAGAA
Statistics
Matches: 130, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
78 1 0.01
79 92 0.71
80 37 0.28
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.33
Consensus pattern (79 bp):
AAAAATCGAATAAATTCTGTTGAATAGTAGGAATAAAATCCTGAAATAGAATTGTTCAATTGATT
TATGTTTGGAAACA
Found at i:31842837 original size:3 final size:3
Alignment explanation
Indices: 31842829--31842866 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
31842819 GATTCAGATT
* *
31842829 GAA GAA GAA GAA GAA GAA GAA -AA GAA AAA GAA AAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
31842867 AATTGAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:31842846 original size:12 final size:11
Alignment explanation
Indices: 31842829--31842862 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
31842819 GATTCAGATT
31842829 GAAGAAGAAGAA
1 GAAGAAGAA-AA
31842841 GAAGAAGAAAA
1 GAAGAAGAAAA
*
31842852 GAAAAAGAAAA
1 GAAGAAGAAAA
31842863 AGAAAATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (11 bp):
GAAGAAGAAAA
Found at i:31842859 original size:17 final size:17
Alignment explanation
Indices: 31842833--31842868 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
31842823 CAGATTGAAG
* *
31842833 AAGAAGAAGAAGAAGAA
1 AAGAAAAAGAAAAAGAA
31842850 AAGAAAAAGAAAAAGAA
1 AAGAAAAAGAAAAAGAA
31842867 AA
1 AA
31842869 TTGAAAAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (17 bp):
AAGAAAAAGAAAAAGAA
Found at i:31850409 original size:41 final size:42
Alignment explanation
Indices: 31850359--31850504 Score: 140
Period size: 41 Copynumber: 3.5 Consensus size: 42
31850349 ACTTGACGTA
31850359 TAAATGGAAGACTCATGTCTC-GAAATGAGCATGAGACTATG-T
1 TAAA-GGAAGACTCATGTCTCGGAAA-GAGCATGAGACTATGTT
* *
31850401 TAAAGGAAGACTCATGTCTCGGAAAGATCGTGAGACTATGTT
1 TAAAGGAAGACTCATGTCTCGGAAAGAGCATGAGACTATGTT
* * * * * *
31850443 TAATGGAAGACTTATGACTCAG-TAGAGCATAAGA-T-TGTT
1 TAAAGGAAGACTCATGTCTCGGAAAGAGCATGAGACTATGTT
* *
31850482 TGAAAGGAAGACTTATGACTCGG
1 T-AAAGGAAGACTCATGTCTCGG
31850505 TGTGCATAAG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 5 0.06
40 20 0.22
41 37 0.42
42 27 0.30
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (42 bp):
TAAAGGAAGACTCATGTCTCGGAAAGAGCATGAGACTATGTT
Found at i:31850512 original size:39 final size:39
Alignment explanation
Indices: 31850439--31850518 Score: 117
Period size: 40 Copynumber: 2.1 Consensus size: 39
31850429 CGTGAGACTA
*
31850439 TGTTTAATGGAAGACTTATGACTCAGTAGAGCATAAGAT
1 TGTTTAAAGGAAGACTTATGACTCAGTAGAGCATAAGAT
* *
31850478 TGTTTGAAAGGAAGACTTATGACTCGGT-GTGCATAAGAT
1 TGTTT-AAAGGAAGACTTATGACTCAGTAGAGCATAAGAT
31850517 TG
1 TG
31850519 CTCAAAGAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 17 0.46
40 20 0.54
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (39 bp):
TGTTTAAAGGAAGACTTATGACTCAGTAGAGCATAAGAT
Found at i:31850530 original size:40 final size:40
Alignment explanation
Indices: 31850447--31850531 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
31850437 TATGTTTAAT
* **
31850447 GGAAGACTTATGACTCAGTAGAGCATAAGATTGTTTGAAA
1 GGAAGACTTATGACTCAGTAGAGCATAAGATTGCTCAAAA
* *
31850487 GGAAGACTTATGACTCGGT-GTGCATAAGATTGCTCAAAGA
1 GGAAGACTTATGACTCAGTAGAGCATAAGATTGCTCAAA-A
31850527 GGAAG
1 GGAAG
31850532 TTTTACGACT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 15 0.38
40 24 0.62
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (40 bp):
GGAAGACTTATGACTCAGTAGAGCATAAGATTGCTCAAAA
Found at i:31852970 original size:16 final size:16
Alignment explanation
Indices: 31852949--31853002 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
31852939 TTAGATTATC
*
31852949 AATTAAATCTTAAATT
1 AATTAAATCATAAATT
31852965 AATTAATAT-ATAAATT
1 AATTAA-ATCATAAATT
*
31852981 AAATAAATCATATAATAT
1 AATTAAATCATA-AAT-T
31852999 AATT
1 AATT
31853003 CAATTAATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 2 0.06
16 20 0.65
17 5 0.16
18 4 0.13
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (16 bp):
AATTAAATCATAAATT
Found at i:31853715 original size:2 final size:2
Alignment explanation
Indices: 31853708--31853742 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
31853698 ACAATTTCAT
31853708 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
31853743 GGTTTAAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:31854840 original size:29 final size:29
Alignment explanation
Indices: 31854791--31855015 Score: 188
Period size: 30 Copynumber: 7.6 Consensus size: 29
31854781 AACGGGTCAA
* * *
31854791 AAAATG-AAGTTTCGAAGAATTTGA-GGTC
1 AAAATGTAATTTTGGAA-AATTTGAGGGTT
* * *
31854819 AAAATGTAATTTTAAGAAAATTTGGGGGTC
1 AAAATGTAATTTT-GGAAAATTTGAGGGTT
* * * *
31854849 AAAATGAAATTTTTGGAAAGTTTG-GAGTC
1 AAAATGTAA-TTTTGGAAAATTTGAGGGTT
* *
31854878 AAAATGTGATTTTAGGAAAGTTT-AGGGTT
1 AAAATGTAATTTT-GGAAAATTTGAGGGTT
* *
31854907 AAAATGTGATTTTGGAAAAATTCGAGGGTT
1 AAAATGTAATTTTGG-AAAATTTGAGGGTT
* *
31854937 AAAATATGATTTTGGAAAAGTTTGAGGGTT
1 AAAATGTAATTTTGGAAAA-TTTGAGGGTT
*
31854967 AAAATATAATTTTGGAAAAATTTGAGGGTT
1 AAAATGTAATTTTGG-AAAATTTGAGGGTT
*
31854997 AAATTGTAATTTTAGGAAA
1 AAAATGTAATTTT-GGAAA
31855016 GTTCGGGGGG
Statistics
Matches: 168, Mismatches: 18, Indels: 20
0.82 0.09 0.10
Matches are distributed among these distances:
28 12 0.07
29 56 0.33
30 90 0.54
31 10 0.06
ACGTcount: A:0.39, C:0.02, G:0.24, T:0.35
Consensus pattern (29 bp):
AAAATGTAATTTTGGAAAATTTGAGGGTT
Found at i:31855039 original size:60 final size:60
Alignment explanation
Indices: 31854915--31855045 Score: 156
Period size: 60 Copynumber: 2.2 Consensus size: 60
31854905 TTAAAATGTG
* * * *
31854915 ATTTTGGAAAAATTCGAGGGTTAAAATATGATTTTGGAAAAGTTTGAGGGTTAAAATATA
1 ATTTTGGAAAAATTCGAGGGTTAAAATATAATTTTGGAAAAGTTGGAGGGTCAAAACATA
* * * *
31854975 ATTTTGGAAAAATTTGAGGGTTAAATTGTAATTTTAGG-AAAGTTCGGGGGGTCAAAACATA
1 ATTTTGGAAAAATTCGAGGGTTAAAATATAATTTT-GGAAAAGTT-GGAGGGTCAAAACATA
*
31855036 TTTTTGGAAA
1 ATTTTGGAAA
31855046 GTGTAGGGAC
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
60 37 0.62
61 23 0.38
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.35
Consensus pattern (60 bp):
ATTTTGGAAAAATTCGAGGGTTAAAATATAATTTTGGAAAAGTTGGAGGGTCAAAACATA
Found at i:31856061 original size:12 final size:12
Alignment explanation
Indices: 31856030--31856063 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
31856020 CTTCCTTTTC
*
31856030 TATTATTTATTA
1 TATTATTTAATA
31856042 TA-TATTTAATA
1 TATTATTTAATA
31856053 TATTATTTAAT
1 TATTATTTAAT
31856064 GTACACTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTATTTAATA
Found at i:31856131 original size:40 final size:40
Alignment explanation
Indices: 31856087--31856163 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
31856077 TGGTTTTGAA
* *
31856087 ATAATAAATAAATA-AAACTA-ATAATATATGTATATAAAAT
1 ATAATAAACAAATATAAA-TATAT-ATATATATATATAAAAT
*
31856127 ATAATTAACAAATATAAATATATATATATATATATAA
1 ATAATAAACAAATATAAATATATATATATATATATAA
31856164 TACCTTGAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 27 0.84
41 5 0.16
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (40 bp):
ATAATAAACAAATATAAATATATATATATATATATAAAAT
Found at i:31857122 original size:52 final size:52
Alignment explanation
Indices: 31857039--31857278 Score: 252
Period size: 51 Copynumber: 4.6 Consensus size: 52
31857029 GCTATAAACG
* * * * *
31857039 AAAGCGTCCGATAACTAACTATCATCGTGAGTAAATGAATCCTTTACGGATT
1 AAAGGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGAAT
* * *
31857091 AAAGGGTCCGATGACTAAGTTTCATTGTGAGTAAATGAATCCTTTACGGATT
1 AAAGGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGAAT
* * * *
31857143 AAA-GGTTCGATAACTAAGTGTCATCGTGAGTAAATGAATCCATGAC-GAAT
1 AAAGGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGAAT
* * * * * * *
31857193 AAAAGGTCCGATGGCTCAGTGTCATCGTGAGTATATCAATTCCTATACGGAAC
1 AAAGGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAA-TCCTTTACGGAAT
* *
31857246 AAGGGGTCGGATGACTATA-TGTCATCGTGAGTA
1 AAAGGGTCCGATGACTA-AGTGTCATCGTGAGTA
31857279 TTAAATGAAA
Statistics
Matches: 157, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
50 6 0.04
51 66 0.42
52 55 0.35
53 29 0.18
54 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (52 bp):
AAAGGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGAAT
Found at i:31857242 original size:103 final size:102
Alignment explanation
Indices: 31857047--31857278 Score: 259
Period size: 103 Copynumber: 2.2 Consensus size: 102
31857037 CGAAAGCGTC
* * * * * *
31857047 CGATAACTAACTATCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGGTCCGATGACTAAGTT
1 CGATAACTAA-TGTCATCGTGAGTAAATGAATCCATGACGGAATAAAAGGTCCGATGACTAAGTG
* * * ** *
31857112 TCATTGTGAGTAAATGAATCCTTTACGGATTAAAGGTT
65 TCATCGTGAGTAAATCAATCCTATACGGAACAAAGGGT
* *
31857150 CGATAACTAAGTGTCATCGTGAGTAAATGAATCCATGAC-GAATAAAAGGTCCGATGGCTCAGTG
1 CGATAACTAA-TGTCATCGTGAGTAAATGAATCCATGACGGAATAAAAGGTCCGATGACTAAGTG
* *
31857214 TCATCGTGAGTATATCAATTCCTATACGGAACAAGGGGT
65 TCATCGTGAGTAAATCAA-TCCTATACGGAACAAAGGGT
*
31857253 CGGATGACTATATGTCATCGTGAGTA
1 C-GATAACTA-ATGTCATCGTGAGTA
31857279 TTAAATGAAA
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
102 35 0.32
103 51 0.47
104 21 0.19
105 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (102 bp):
CGATAACTAATGTCATCGTGAGTAAATGAATCCATGACGGAATAAAAGGTCCGATGACTAAGTGT
CATCGTGAGTAAATCAATCCTATACGGAACAAAGGGT
Found at i:31865483 original size:51 final size:51
Alignment explanation
Indices: 31865400--31865585 Score: 255
Period size: 51 Copynumber: 3.6 Consensus size: 51
31865390 GCTATAAACG
31865400 AAAGAGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT
1 AAAG-GTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT
* * *
31865452 AAAGGCCCGATGATTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT
* * * * * * * *
31865503 AAAGGTCTGATAACTAAGTGTCATCGTAAGTAAATGAATCCATGACGAATA
1 AAAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT
*
31865554 AAAGGTCCGATGGCTAAGTGTCATCATGAGTA
1 AAAGGTCCGATGACTAAGTGTCATCATGAGTA
31865586 TATAAATTCT
Statistics
Matches: 117, Mismatches: 17, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
51 113 0.97
52 4 0.03
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTACGGATT
Found at i:31866937 original size:122 final size:122
Alignment explanation
Indices: 31866720--31866956 Score: 384
Period size: 122 Copynumber: 1.9 Consensus size: 122
31866710 AAGTGTTCCA
* * *
31866720 GGGTTTGAAGTCTCGTTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTCTTTGTTCTTATC
1 GGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTCTCTGTTCTCATC
*
31866785 AAGAAGATGATCGCTTTATTACTTTGACCCACTTCCCTCTATCTCATCAGGAAGATG
66 AAGAAGATGACCGCTTTATTACTTTGACCCACTTCCCTCTATCTCATCAGGAAGATG
* *
31866842 GGGTTTGAAGTCTCATTCGTATTGAGTTTTGTTTCATTGATTTGGTCTACTTCTCTGTTCTCATC
1 GGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTCTCTGTTCTCATC
* * * *
31866907 AGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAG
66 AAGAAGATGACCGCTTTATTACTTTGACCCACTTCCCTCTATCTCATCAG
31866957 AAACATGGTC
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
122 105 1.00
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.42
Consensus pattern (122 bp):
GGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTCTCTGTTCTCATC
AAGAAGATGACCGCTTTATTACTTTGACCCACTTCCCTCTATCTCATCAGGAAGATG
Found at i:31867557 original size:50 final size:50
Alignment explanation
Indices: 31867375--31867670 Score: 233
Period size: 50 Copynumber: 6.0 Consensus size: 50
31867365 ATCCTCCTAA
* * * * * *
31867375 TCACATCTTTTAAGGTATCGGATTCACCGTTGCGGCTTTAATCC-TTCCCA
1 TCACATCTTCTAAGGTATCGGGTTTACCGTTGCGGCCTCAA-CCTTTCCCT
* * * * * * *
31867425 ACACGTCTTCTAAGGTTTCGAGTTTGCCGTTACGG-CTCAACCTTTCTCT
1 TCACATCTTCTAAGGTATCGGGTTTACCGTTGCGGCCTCAACCTTTCCCT
* * * * *
31867474 TAAAATCTTC-ATGGTATCGGGTTCACCGTTGCGGCCTTAACCTTTCCCT
1 TCACATCTTCTAAGGTATCGGGTTTACCGTTGCGGCCTCAACCTTTCCCT
* * * *
31867523 TCACGTCTTCTAAGGTACCGGGTTTGCTGTTGCGGCCTCAACCTTT-CCT
1 TCACATCTTCTAAGGTATCGGGTTTACCGTTGCGGCCTCAACCTTTCCCT
** * *
31867572 ATCTTATCTTCTAAGGTA-CTGGGTTTACCGTTGCGGCCTCATCCTTTCCCA
1 -TCACATCTTCTAAGGTATC-GGGTTTACCGTTGCGGCCTCAACCTTTCCCT
* * * * ** *
31867623 TCTCATCTTCTAAAGTATCGGGTTCACCGCTATGACCTCAACCTTTCC
1 TCACATCTTCTAAGGTATCGGGTTTACCGTTGCGGCCTCAACCTTTCC
31867671 ATTTAAATCT
Statistics
Matches: 190, Mismatches: 49, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
48 20 0.11
49 36 0.19
50 131 0.69
51 3 0.02
ACGTcount: A:0.17, C:0.30, G:0.18, T:0.35
Consensus pattern (50 bp):
TCACATCTTCTAAGGTATCGGGTTTACCGTTGCGGCCTCAACCTTTCCCT
Found at i:31867619 original size:100 final size:98
Alignment explanation
Indices: 31867386--31867646 Score: 278
Period size: 98 Copynumber: 2.6 Consensus size: 98
31867376 CACATCTTTT
* * * * *
31867386 AAGGTATCGGATTCACCGTTGCGGCTTTAATCC-TTCCCAACACGTCTTCTAAGGTTTCGAGTTT
1 AAGGTATCGGGTTCACCGTTGCGGC-CTAATCCTTTCCCATCACGTCTTCTAAGGTATCGGGTTT
31867450 GCCGTTACGGCTCAACCTTTCTCTTAAAATCTTC
65 GCCGTTACGGCTCAACCTTTCTCTTAAAATCTTC
* * *
31867484 ATGGTATCGGGTTCACCGTTGCGGCCTTAA-CCTTTCCCTTCACGTCTTCTAAGGTACCGGGTTT
1 AAGGTATCGGGTTCACCGTTGCGGCC-TAATCCTTTCCCATCACGTCTTCTAAGGTATCGGGTTT
* * ***
31867548 GCTGTTGCGGCCTCAACCTTTC-CTATCTTATCTTC
65 GCCGTTACGG-CTCAACCTTTCTCT-TAAAATCTTC
* * * * *
31867583 TAAGGTA-CTGGGTTTACCGTTGCGGCCTCATCCTTTCCCATCTCATCTTCTAAAGTATCGGGTT
1 -AAGGTATC-GGGTTCACCGTTGCGGCCTAATCCTTTCCCATCACGTCTTCTAAGGTATCGGGTT
31867647 CACCGCTATG
Statistics
Matches: 135, Mismatches: 21, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
97 2 0.01
98 62 0.46
99 21 0.16
100 50 0.37
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.36
Consensus pattern (98 bp):
AAGGTATCGGGTTCACCGTTGCGGCCTAATCCTTTCCCATCACGTCTTCTAAGGTATCGGGTTTG
CCGTTACGGCTCAACCTTTCTCTTAAAATCTTC
Found at i:31868483 original size:16 final size:17
Alignment explanation
Indices: 31868457--31868492 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
31868447 TTTCCCATTT
31868457 TTTTCTTCTTTTTTCTC
1 TTTTCTTCTTTTTTCTC
*
31868474 TTTT-TTCTTTTTTTTC
1 TTTTCTTCTTTTTTCTC
31868490 TTT
1 TTT
31868493 ATTTATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTCTTCTTTTTTCTC
Found at i:31868486 original size:18 final size:17
Alignment explanation
Indices: 31868454--31868509 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 17
31868444 CTTTTTCCCA
31868454 TTTTTTTCTTCTTTTTTC
1 TTTTTTTCTT-TTTTTTC
31868472 TCTTTTTTCTTTTTTTTC
1 T-TTTTTTCTTTTTTTTC
* *
31868490 TTTATTTATTTATTTTTC
1 TTTTTTTCTTT-TTTTTC
31868508 TT
1 TT
31868510 CATTGAATCC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.24
18 17 0.50
19 9 0.26
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTTCTTTTTTTTC
Found at i:31868492 original size:9 final size:9
Alignment explanation
Indices: 31868454--31868492 Score: 60
Period size: 9 Copynumber: 4.2 Consensus size: 9
31868444 CTTTTTCCCA
31868454 TTTTTTTCT
1 TTTTTTTCT
31868463 TCTTTTTTCT
1 T-TTTTTTCT
*
31868473 CTTTTTTCT
1 TTTTTTTCT
31868482 TTTTTTTCT
1 TTTTTTTCT
31868491 TT
1 TT
31868493 ATTTATTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:31874183 original size:89 final size:90
Alignment explanation
Indices: 31874016--31874224 Score: 278
Period size: 89 Copynumber: 2.3 Consensus size: 90
31874006 TAAAGAATTT
* *
31874016 AGGGTCAAAATGTAATTTTAGGAAAA-TTTAGGGGTTAAAATGTAATTTTTGGAAAGTTTAAGGG
1 AGGGTCAAAATGTGATTTT-GGAAAAGTTTAAGGGTTAAAATGTAATTTTTGGAAAGTTTAAGGG
* * *
31874080 TTAAAATGTGATTTTTGGAAAGTTTA
65 TTAAAATGTAATTTTAGGAAAGTTGA
* *
31874106 AGGGTTAAAATGTGATTTTGGAAAAGTTTAAGGGTTAAAATGTAA-TTTTGGGAAGTTTAAGGGT
1 AGGGTCAAAATGTGATTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTTGGAAAGTTTAAGGGT
*
31874170 TAAAATTTAATTTTAGGAAAGTTGA
66 TAAAATGTAATTTTAGGAAAGTTGA
* ** * *
31874195 GGGGTCAAAACATGATTTTTGTAAAGTTTA
1 AGGGTCAAAATGTGATTTTGGAAAAGTTTA
31874225 GGGATCTTTT
Statistics
Matches: 104, Mismatches: 14, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
89 69 0.66
90 35 0.34
ACGTcount: A:0.36, C:0.01, G:0.25, T:0.37
Consensus pattern (90 bp):
AGGGTCAAAATGTGATTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTTGGAAAGTTTAAGGGT
TAAAATGTAATTTTAGGAAAGTTGA
Found at i:31874197 original size:29 final size:29
Alignment explanation
Indices: 31874016--31874192 Score: 246
Period size: 30 Copynumber: 5.9 Consensus size: 29
31874006 TAAAGAATTT
* *
31874016 AGGGTCAAAATGTAATTTTAGGAAAATTTA
1 AGGGTTAAAATGTAATTTT-GGAAAGTTTA
*
31874046 GGGGTTAAAATGTAATTTTTGGAAAGTTTA
1 AGGGTTAAAATGTAA-TTTTGGAAAGTTTA
*
31874076 AGGGTTAAAATGTGATTTTTGGAAAGTTTA
1 AGGGTTAAAATGT-AATTTTGGAAAGTTTA
*
31874106 AGGGTTAAAATGTGATTTTGGAAAAGTTTA
1 AGGGTTAAAATGTAATTTTGG-AAAGTTTA
*
31874136 AGGGTTAAAATGTAATTTTGGGAAGTTTA
1 AGGGTTAAAATGTAATTTTGGAAAGTTTA
*
31874165 AGGGTTAAAATTTAATTTTAGGAAAGTT
1 AGGGTTAAAATGTAATTTT-GGAAAGTT
31874193 GAGGGGTCAA
Statistics
Matches: 132, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
29 31 0.23
30 96 0.73
31 5 0.04
ACGTcount: A:0.37, C:0.01, G:0.25, T:0.38
Consensus pattern (29 bp):
AGGGTTAAAATGTAATTTTGGAAAGTTTA
Found at i:31874213 original size:59 final size:58
Alignment explanation
Indices: 31874016--31874224 Score: 238
Period size: 60 Copynumber: 3.5 Consensus size: 58
31874006 TAAAGAATTT
* * * *
31874016 AGGGTCAAAATGTAATTTTAGGAAAATTTAGGGGTTAAAATGTAATTTTTGGAAAGTTTA
1 AGGGTTAAAATGTGATTTT-GGAAAGTTTAAGGGTTAAAATGTAA-TTTTGGAAAGTTTA
*
31874076 AGGGTTAAAATGTGATTTTTGGAAAGTTTAAGGGTTAAAATGTGATTTTGGAAAAGTTTA
1 AGGGTTAAAATGTGA-TTTTGGAAAGTTTAAGGGTTAAAATGTAATTTTGG-AAAGTTTA
* * * *
31874136 AGGGTTAAAATGTAATTTTGGGAAGTTTAAGGGTTAAAATTTAATTTTAGGAAAGTTGA
1 AGGGTTAAAATGTGATTTTGGAAAGTTTAAGGGTTAAAATGTAATTTT-GGAAAGTTTA
* * ** *
31874195 GGGGTCAAAACATGATTTTTGTAAAGTTTA
1 AGGGTTAAAATGTGA-TTTTGGAAAGTTTA
31874225 GGGATCTTTT
Statistics
Matches: 128, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
59 53 0.41
60 71 0.55
61 4 0.03
ACGTcount: A:0.36, C:0.01, G:0.25, T:0.37
Consensus pattern (58 bp):
AGGGTTAAAATGTGATTTTGGAAAGTTTAAGGGTTAAAATGTAATTTTGGAAAGTTTA
Found at i:31875301 original size:2 final size:2
Alignment explanation
Indices: 31875294--31875336 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
31875284 TAATTAACAA
31875294 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31875336 A
1 A
31875337 AATACCTTGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:31876576 original size:21 final size:20
Alignment explanation
Indices: 31876552--31876594 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
31876542 AATTAACGTC
31876552 ATAAAATTAGTATATAATAAT
1 ATAAAATTAGTATA-AATAAT
*
31876573 ATAAAATTAGTATAAATTAT
1 ATAAAATTAGTATAAATAAT
31876593 AT
1 AT
31876595 TTTTAGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (20 bp):
ATAAAATTAGTATAAATAAT
Found at i:31878347 original size:18 final size:20
Alignment explanation
Indices: 31878326--31878368 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
31878316 GAATTGTGAA
31878326 ATAAATATTT-TAAAAA-TT
1 ATAAATATTTATAAAAATTT
*
31878344 AT-AATGTTTATAAAAATTT
1 ATAAATATTTATAAAAATTT
31878363 ATAAAT
1 ATAAAT
31878369 TAATGTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 6 0.29
18 8 0.38
19 4 0.19
20 3 0.14
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
ATAAATATTTATAAAAATTT
Found at i:31878763 original size:16 final size:17
Alignment explanation
Indices: 31878733--31878766 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
31878723 TTTATTTTTA
31878733 TATAAAATAATTTGTTT
1 TATAAAATAATTTGTTT
*
31878750 TATAGAATAA-TTGTTT
1 TATAAAATAATTTGTTT
31878766 T
1 T
31878767 TTCAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (17 bp):
TATAAAATAATTTGTTT
Found at i:31880218 original size:2 final size:2
Alignment explanation
Indices: 31880211--31880248 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
31880201 AAAGACCCTA
31880211 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31880249 CTTTTGAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:31880379 original size:18 final size:16
Alignment explanation
Indices: 31880356--31880389 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
31880346 TAACAAACTG
31880356 AAACAAATTAAATTAAAA
1 AAACAAA-TAAA-TAAAA
31880374 AAACAAATAAATAAAA
1 AAACAAATAAATAAAA
31880390 TAATATCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 4 0.25
18 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (16 bp):
AAACAAATAAATAAAA
Found at i:31881859 original size:2 final size:2
Alignment explanation
Indices: 31881852--31881884 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
31881842 CTTACAGATG
31881852 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
31881885 ATGAATGAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:31883105 original size:49 final size:48
Alignment explanation
Indices: 31883052--31883390 Score: 209
Period size: 49 Copynumber: 6.9 Consensus size: 48
31883042 AGGCACCGGG
*
31883052 TTCGCCGTTGCGG-TTATAACCTTTCCCTCCATTTCTTCGTGGTACTAGA
1 TTCGCCGTTGCGGCTTA-AACCTTTCCCTTCA-TTCTTCGTGGTACTAGA
* * * * * * *
31883101 TTCGCCATTACGGCTTAAATCTTTCCATTCATGCTTCCGAGGTACAATG-
1 TTCGCCGTTGCGGCTTAAACCTTTCCCTTCATTCTT-CGTGGTACTA-GA
* * * * * *
31883150 TTCACCATTACGACTTAAACCTTTCCCTCCATAT-TGTCGTGGTACTTGA
1 TTCGCCGTTGCGGCTTAAACCTTTCCCTTCAT-TCT-TCGTGGTACTAGA
* * * * * * *
31883199 TTCTCCGTTGCGGCTTAAATCTTTCCATTCATGCTTTCGAGGTACAAGG
1 TTCGCCGTTGCGGCTTAAACCTTTCCCTTCATTC-TTCGTGGTACTAGA
** * *
31883248 TTCGCCGTTGCTACTTAAACCTTTCCCTTCAAATCTTCGTGGTACTGGA
1 TTCGCCGTTGCGGCTTAAACCTTTCCCTTC-ATTCTTCGTGGTACTAGA
* * * * * *
31883297 TTCGTCGTTGCGGCTTAAATCTTTCCCATAATATCTGC-TAAGGTACTAGG
1 TTCGCCGTTGCGGCTTAAACCTTTCCCTTCAT-TCTTCGT--GGTACTAGA
* * * * **
31883347 TCCGCCGTTACAGCATCGACCTTTCCCTTCATATCTTCGTGGTA
1 TTCGCCGTTGCGGCTTAAACCTTTCCCTTCAT-TCTTCGTGGTA
31883391 ATGAAACCTA
Statistics
Matches: 216, Mismatches: 61, Indels: 26
0.71 0.20 0.09
Matches are distributed among these distances:
48 7 0.03
49 166 0.77
50 42 0.19
51 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.36
Consensus pattern (48 bp):
TTCGCCGTTGCGGCTTAAACCTTTCCCTTCATTCTTCGTGGTACTAGA
Found at i:31883201 original size:98 final size:97
Alignment explanation
Indices: 31883069--31883322 Score: 346
Period size: 98 Copynumber: 2.6 Consensus size: 97
31883059 TTGCGGTTAT
* * *
31883069 AACCTTTCCCTCCATTTCTTCGTGGTACTAGATTCGCCATTACGGCTTAAATCTTTCCATTCATG
1 AACCTTTCCCTCCATAT-TTCGTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCATTCATG
*
31883134 CTTCCGAGGTACAATGTTCACCATTACGACTTA
65 CTTCCGAGGTACAAGGTTCACCATTACGACTTA
* *
31883167 AACCTTTCCCTCCATATTGTCGTGGTACTTGATTCTCCGTTGCGGCTTAAATCTTTCCATTCATG
1 AACCTTTCCCTCCATATT-TCGTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCATTCATG
* * * * *
31883232 CTTTCGAGGTACAAGGTTCGCCGTTGCTACTTA
65 CTTCCGAGGTACAAGGTTCACCATTACGACTTA
* * * *
31883265 AACCTTTCCCTTCAAATCTTCGTGGTACTGGATTCGTCGTTGCGGCTTAAATCTTTCC
1 AACCTTTCCCTCCATAT-TTCGTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCC
31883323 CATAATATCT
Statistics
Matches: 138, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
97 1 0.01
98 136 0.99
99 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (97 bp):
AACCTTTCCCTCCATATTTCGTGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCATTCATGC
TTCCGAGGTACAAGGTTCACCATTACGACTTA
Found at i:31883388 original size:99 final size:98
Alignment explanation
Indices: 31883069--31883390 Score: 307
Period size: 98 Copynumber: 3.3 Consensus size: 98
31883059 TTGCGGTTAT
* * * * * *
31883069 AACCTTTCCCTCCATTTCTTCGTGGTACTAGATTCGCCATTACGGCTTAAATCTTTCCATTCATG
1 AACCTTTCCCTTCATATCTTCGTGGTACTGGATTCTCCGTTGCGGCTTAAATCTTTCCATTCATG
* * * * * * *
31883134 CT-TCCGAGGTACAATGTTCACCATTACGACTTA
66 CTCT-CAAGGTACAAGGTCCGCCGTTACTACATA
* *
31883167 AACCTTTCCCTCCATAT-TGTCGTGGTACTTGATTCTCCGTTGCGGCTTAAATCTTTCCATTCAT
1 AACCTTTCCCTTCATATCT-TCGTGGTACTGGATTCTCCGTTGCGGCTTAAATCTTTCCATTCAT
* * * * *
31883231 GCTTTCGAGGTACAAGGTTCGCCGTTGCTACTTA
65 GCTCTCAAGGTACAAGGTCCGCCGTTACTACATA
*
31883265 AACCTTTCCCTTCAAATCTTCGTGGTACTGGATTCGT-CGTTGCGGCTTAAATCTTTCCCATAAT
1 AACCTTTCCCTTCATATCTTCGTGGTACTGGATTC-TCCGTTGCGGCTTAAATCTTT-CCAT--T
* *
31883329 -AT-CTGCT-AAGGTACTAGGTCCGCCGTTAC-AGCATC
62 CATGCT-CTCAAGGTACAAGGTCCGCCGTTACTA-CATA
*
31883364 GACCTTTCCCTTCATATCTTCGTGGTA
1 AACCTTTCCCTTCATATCTTCGTGGTA
31883391 ATGAAACCTA
Statistics
Matches: 193, Mismatches: 22, Indels: 17
0.83 0.09 0.07
Matches are distributed among these distances:
97 1 0.01
98 134 0.69
99 54 0.28
100 3 0.02
101 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (98 bp):
AACCTTTCCCTTCATATCTTCGTGGTACTGGATTCTCCGTTGCGGCTTAAATCTTTCCATTCATG
CTCTCAAGGTACAAGGTCCGCCGTTACTACATA
Found at i:31884418 original size:12 final size:12
Alignment explanation
Indices: 31884401--31884442 Score: 75
Period size: 12 Copynumber: 3.4 Consensus size: 12
31884391 TCGACCTCTC
31884401 TTTTTTCTTTTT
1 TTTTTTCTTTTT
31884413 TTTTTTCTTTTT
1 TTTTTTCTTTTT
31884425 TTTTCTTCTTTTT
1 TTTT-TTCTTTTT
31884438 TTTTT
1 TTTTT
31884443 GGGTAAAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 17 0.59
13 12 0.41
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:31884424 original size:13 final size:13
Alignment explanation
Indices: 31884401--31884442 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
31884391 TCGACCTCTC
31884401 TTTTTTC-TTTTT
1 TTTTTTCTTTTTT
31884413 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
*
31884426 TTTCTTCTTTTTT
1 TTTTTTCTTTTTT
31884439 TTTT
1 TTTT
31884443 GGGTAAAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
12 7 0.26
13 20 0.74
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTCTTTTTT
Found at i:31888077 original size:3 final size:3
Alignment explanation
Indices: 31888069--31888107 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
31888059 CAAAATCCAA
31888069 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
31888108 GAATATTCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:31889192 original size:20 final size:20
Alignment explanation
Indices: 31889167--31889215 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
31889157 TTTCAAAAAA
31889167 ATCAACGGTCAAAGTCAACG
1 ATCAACGGTCAAAGTCAACG
**
31889187 ATCAACAATCAAAGTCAACG
1 ATCAACGGTCAAAGTCAACG
*
31889207 GTCAACGGT
1 ATCAACGGT
31889216 TTGACTTGGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.16
Consensus pattern (20 bp):
ATCAACGGTCAAAGTCAACG
Found at i:31895835 original size:5 final size:5
Alignment explanation
Indices: 31895825--31895851 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
31895815 ATTATTTAAA
31895825 TAATT TAATT TAATT TAATT TAATT TA
1 TAATT TAATT TAATT TAATT TAATT TA
31895852 GAGTGAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TAATT
Found at i:31899793 original size:26 final size:27
Alignment explanation
Indices: 31899740--31899795 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
31899730 ACATACCATG
* * *
31899740 ATCACATACCATTTCATCATCAATTCAT
1 ATCACATA-CATTCCATCAACAAATCAT
31899768 ATCACATA-ATTCCATCAACAAATCAT
1 ATCACATACATTCCATCAACAAATCAT
31899794 AT
1 AT
31899796 TACAAATCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 17 0.68
28 8 0.32
ACGTcount: A:0.41, C:0.27, G:0.00, T:0.32
Consensus pattern (27 bp):
ATCACATACATTCCATCAACAAATCAT
Found at i:31900826 original size:13 final size:13
Alignment explanation
Indices: 31900808--31900842 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
31900798 TTTGAGTACT
31900808 TGTGTGTGCAAGG
1 TGTGTGTGCAAGG
31900821 TGTGTGTGCAAGG
1 TGTGTGTGCAAGG
31900834 TGTGTGTGC
1 TGTGTGTGC
31900843 CTTATCAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.09, G:0.46, T:0.34
Consensus pattern (13 bp):
TGTGTGTGCAAGG
Found at i:31913385 original size:15 final size:15
Alignment explanation
Indices: 31913365--31913396 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
31913355 CAATTCTCCA
31913365 CCCCTGTAGACGAAC
1 CCCCTGTAGACGAAC
31913380 CCCCTGTAGACGAAC
1 CCCCTGTAGACGAAC
31913395 CC
1 CC
31913397 AGTCCGGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.44, G:0.19, T:0.12
Consensus pattern (15 bp):
CCCCTGTAGACGAAC
Found at i:31915692 original size:59 final size:59
Alignment explanation
Indices: 31915582--31915894 Score: 443
Period size: 59 Copynumber: 5.3 Consensus size: 59
31915572 ATGCCCGGGA
* * * * * *
31915582 GGTAAAATGGTAATTTTTAGTTAGATCGCGG-TAAAAATGGAATTTTGGAAAGTTCGAG
1 GGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGGAAGTTCGAG
* * *
31915640 GGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGAGTTTGGAAAGTT-TAGG
1 GGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGGAAGTTCGA-G
*
31915699 GGTAAAATGGTAA-TTTTGGTGAAATCGAGGTTAAAAATGGGATTTTGGGAAGTTCGAG
1 GGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGGAAGTTCGAG
* * *
31915757 GGTAAAATAGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGGAAGTTCGGG
1 GGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGGAAGTTCGAG
* * *
31915816 GGTAAAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGGGATTTTGGGAAGTTTGGG
1 GGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGGAAGTTCGAG
*
31915875 GGTAAAATGGTAACTTTTGG
1 GGTAAAATGGTAATTTTTGG
31915895 ACAATTTAGG
Statistics
Matches: 231, Mismatches: 20, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
58 79 0.34
59 152 0.66
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (59 bp):
GGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGGAAGTTCGAG
Found at i:31915773 original size:117 final size:118
Alignment explanation
Indices: 31915582--31915894 Score: 461
Period size: 117 Copynumber: 2.7 Consensus size: 118
31915572 ATGCCCGGGA
* * * * * *
31915582 GGTAAAATGGTAATTTTTAGTTAGATCGCGG-TAAAAATGGAATTTTGGAAAGTTCGAGGGTAAA
1 GGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGGATTTTGGGAAGTTCGAGGGTAAA
* *
31915646 ATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGAGTTTGGAAAGTTTAGG
66 ATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAAGTTTGGAAAGTTCAGG
31915699 GGTAAAATGGTAA-TTTTGGTGAAATCGAGGTTAAAAATGGGATTTTGGGAAGTTCGAGGGTAAA
1 GGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGGATTTTGGGAAGTTCGAGGGTAAA
* * * *
31915763 ATAGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGGAAGTTCGGG
66 ATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAAGTTTGGAAAGTTCAGG
* *
31915816 GGTAAAATGGTAATTTTTGGTGAAATC-AGGGTTAAAAATGGGATTTTGGGAAGTTTGGGGGTAA
1 GGTAAAATGGTAATTTTTGGTGAAATCGA-GGTTAAAAATGGGATTTTGGGAAGTTCGAGGGTAA
*
31915880 AATGGTAACTTTTGG
65 AATGGTAATTTTTGG
31915895 ACAATTTAGG
Statistics
Matches: 177, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
116 13 0.07
117 105 0.59
118 59 0.33
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (118 bp):
GGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGGATTTTGGGAAGTTCGAGGGTAAA
ATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAAGTTTGGAAAGTTCAGG
Found at i:31918460 original size:201 final size:201
Alignment explanation
Indices: 31918154--31918542 Score: 620
Period size: 201 Copynumber: 1.9 Consensus size: 201
31918144 TGTAATCATC
* * * *
31918154 TGTTTTACTTCGCTTCTCTAGATCTCCTCAAGAAGACGAGTTTGGTCCACTTCTCTGTGTCTCAT
1 TGTTTTACTTCGCTTCTCTAGATCTCCTCAAGAAGACGAATCTGGTCCACTTCTCTATATCTCAT
*
31918219 CAAGAAGCTAACCTTTTTATTGCTTCGTTCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGA
66 CAAGAAGCTAACCTTTTTATTGCTTCGCTCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGA
*
31918284 AGATTTGCTCGAGTTAGAGCGTTGAGTTGGTATTCTTCTCTGTATCTCATCAGGAAGACAATCGC
131 AGATTTGCTCGAGTTAGAGCGTTGAGTTGGCATTCTTCTCTGTATCTCATCAGGAAGACAATCGC
31918349 ATCACT
196 ATCACT
* * * * *
31918355 TGTTTTGA-TTCGTTTCTCTGGATCTCTTCAGGAAGACGAATCTGGTCTACTTCTCTATATCTCA
1 TGTTTT-ACTTCGCTTCTCTAGATCTCCTCAAGAAGACGAATCTGGTCCACTTCTCTATATCTCA
* *
31918419 TCAGGAAGCTAACCTTTTTATTGCTTCGACT-TGCTTCTCAGTGTCTCATCAGGAAGTTGGGTTC
65 TCAAGAAGCTAACCTTTTTATTGCTTCG-CTCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTC
*
31918483 GAAGATTTGCTCGAGTTTGAGCGTTGAGTTGGCATTCTTCTCTGTATCTCATCAGGAAGA
129 GAAGATTTGCTCGAGTTAGAGCGTTGAGTTGGCATTCTTCTCTGTATCTCATCAGGAAGA
31918543 TGACCGCCTC
Statistics
Matches: 172, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
201 170 0.99
202 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (201 bp):
TGTTTTACTTCGCTTCTCTAGATCTCCTCAAGAAGACGAATCTGGTCCACTTCTCTATATCTCAT
CAAGAAGCTAACCTTTTTATTGCTTCGCTCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGA
AGATTTGCTCGAGTTAGAGCGTTGAGTTGGCATTCTTCTCTGTATCTCATCAGGAAGACAATCGC
ATCACT
Found at i:31930699 original size:29 final size:29
Alignment explanation
Indices: 31930667--31930754 Score: 90
Period size: 28 Copynumber: 3.0 Consensus size: 29
31930657 GGATGCTTGG
*
31930667 GGGGCAAAATGGTAATTTTTGGTGAGATC
1 GGGGAAAAATGGTAATTTTTGGTGAGATC
** *
31930696 GGGGTAAAAATGG-AA-TTTTGGAAAGTTC
1 GGGG-AAAAATGGTAATTTTTGGTGAGATC
* *
31930724 GAGGGTAAAATGGTAATTTTTGGTGAAATC
1 G-GGGAAAAATGGTAATTTTTGGTGAGATC
31930754 G
1 G
31930755 AGGTTAAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
28 18 0.39
29 11 0.24
30 17 0.37
ACGTcount: A:0.32, C:0.05, G:0.33, T:0.31
Consensus pattern (29 bp):
GGGGAAAAATGGTAATTTTTGGTGAGATC
Found at i:31930780 original size:59 final size:59
Alignment explanation
Indices: 31930672--31931151 Score: 633
Period size: 59 Copynumber: 8.3 Consensus size: 59
31930662 CTTGGGGGGC
* * * * *
31930672 AAAATGGTAATTTTTGGTGAGATCG-GGGTAAAAATGGAATTTTGGAAAGTTCGAGGGT
1 AAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTTGAGGGT
* * * *
31930730 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGGATTTTAGAAAGTTT-AGGGGT
1 AAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTTGA-GGGT
* * * *
31930789 -AAATGGTAA-TTTTGGTAAAATTGAGGTTAAAAATGGGATTTTGGGAAGTTCGGGGGT
1 AAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTTGAGGGT
* * *
31930846 AAAATGGTTATTTTTGGTAAAATCGGGGTTAAAAATGGGATTTTGGGAAGTTT-ATGGGT
1 AAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTTGA-GGGT
* * *
31930905 AAAATGGTAATTTTTGGTGATATCGGGGTTAAAAATGGAATTTTGGGAAGTTTGAGGGT
1 AAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTTGAGGGT
31930964 AAAATGGTAA-TTTTGGTAAAATC-AGGGTTAAAAATGGAATTTTGGGAAGTTTG-GGGT
1 AAAATGGTAATTTTTGGTAAAATCGA-GGTTAAAAATGGAATTTTGGGAAGTTTGAGGGT
*
31931021 TAAATGGTAA-TTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTTG-GGGT
1 AAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTTGAGGGT
* *
31931078 AAAATGGTAATTTTTGGTGAAATC-ATGGTTAAAAATTGG-ATTTTGGGAAGTTTGGGGGT
1 AAAATGGTAATTTTTGGTAAAATCGA-GGTTAAAAA-TGGAATTTTGGGAAGTTTGAGGGT
31931137 AAAATGGTAATTTTT
1 AAAATGGTAATTTTT
31931152 AGACAGTCTA
Statistics
Matches: 383, Mismatches: 26, Indels: 25
0.88 0.06 0.06
Matches are distributed among these distances:
57 109 0.28
58 118 0.31
59 155 0.40
60 1 0.00
ACGTcount: A:0.33, C:0.02, G:0.30, T:0.35
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTTGAGGGT
Found at i:31930830 original size:116 final size:117
Alignment explanation
Indices: 31930667--31931150 Score: 674
Period size: 116 Copynumber: 4.2 Consensus size: 117
31930657 GGATGCTTGG
* * * * *
31930667 GGGGCAAAATGGTAATTTTTGGTGAGATCG-GGGTAAAAATGGAATTTTGGAAAGTTCGAGGGTA
1 GGGGTAAAATGGTAA-TTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTCGAGGGTA
* * *
31930731 AAATGGTAATTTTTGGTGAAATC-GAGGTTAAAAATGGGATTTTAGAAAGTTTA
65 AAATGGTAATTTTTGGTAAAATCAG-GGTTAAAAATGGGATTTTGGGAAGTTTA
* * *
31930784 GGGGT-AAATGGTAATTTTGGTAAAATTGAGGTTAAAAATGGGATTTTGGGAAGTTCGGGGGTAA
1 GGGGTAAAATGGTAATTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTCGAGGGTAA
* *
31930848 AATGGTTATTTTTGGTAAAATCGGGGTTAAAAATGGGATTTTGGGAAGTTTA
66 AATGGTAATTTTTGGTAAAATCAGGGTTAAAAATGGGATTTTGGGAAGTTTA
* * * * *
31930900 TGGGTAAAATGGTAATTTTTGGTGATATCGGGGTTAAAAATGGAATTTTGGGAAGTTTGAGGGTA
1 GGGGTAAAATGGTAA-TTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTCGAGGGTA
*
31930965 AAATGGTAA-TTTTGGTAAAATCAGGGTTAAAAATGGAATTTTGGGAAGTTT-
65 AAATGGTAATTTTTGGTAAAATCAGGGTTAAAAATGGGATTTTGGGAAGTTTA
* *
31931016 GGGGTTAAATGGTAATTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTTG-GGGTAA
1 GGGGTAAAATGGTAATTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTCGAGGGTAA
* * * *
31931080 AATGGTAATTTTTGGTGAAATCATGGTTAAAAATTGGATTTTGGGAAGTTTG
66 AATGGTAATTTTTGGTAAAATCAGGGTTAAAAATGGGATTTTGGGAAGTTTA
31931132 GGGGTAAAATGGTAATTTT
1 GGGGTAAAATGGTAATTTT
31931151 TAGACAGTCT
Statistics
Matches: 328, Mismatches: 33, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
114 14 0.04
115 89 0.27
116 121 0.37
117 54 0.16
118 50 0.15
ACGTcount: A:0.32, C:0.02, G:0.31, T:0.35
Consensus pattern (117 bp):
GGGGTAAAATGGTAATTTTGGTAAAATCGAGGTTAAAAATGGAATTTTGGGAAGTTCGAGGGTAA
AATGGTAATTTTTGGTAAAATCAGGGTTAAAAATGGGATTTTGGGAAGTTTA
Found at i:31935130 original size:12 final size:12
Alignment explanation
Indices: 31935112--31935158 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
31935102 TTCACGAACA
31935112 AGCTCGTTTATT
1 AGCTCGTTTATT
* *
31935124 GGCTCGTTTATA
1 AGCTCGTTTATT
31935136 AGCTCGTTTA-T
1 AGCTCGTTTATT
31935147 AGCTCGTTTATT
1 AGCTCGTTTATT
31935159 TATTAATGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 10 0.33
12 20 0.67
ACGTcount: A:0.17, C:0.17, G:0.19, T:0.47
Consensus pattern (12 bp):
AGCTCGTTTATT
Found at i:31935142 original size:24 final size:23
Alignment explanation
Indices: 31935111--31935157 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
31935101 GTTCACGAAC
*
31935111 AAGCTCGTTTATTGGCTCGTTTAT
1 AAGCTCGTTTA-TAGCTCGTTTAT
31935135 AAGCTCGTTTATAGCTCGTTTAT
1 AAGCTCGTTTATAGCTCGTTTAT
31935158 TTATTAATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.45
Consensus pattern (23 bp):
AAGCTCGTTTATAGCTCGTTTAT
Found at i:31935281 original size:24 final size:23
Alignment explanation
Indices: 31935254--31935304 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 23
31935244 ACATTGATCG
*
31935254 TGAACGCGTTCAATTATATGTTCA
1 TGAACACGTTCAATTA-ATGTTCA
* * *
31935278 TGAACATGTTCGATTAATGTTCG
1 TGAACACGTTCAATTAATGTTCA
31935301 TGAA
1 TGAA
31935305 TATGTTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (23 bp):
TGAACACGTTCAATTAATGTTCA
Found at i:31935304 original size:23 final size:23
Alignment explanation
Indices: 31935261--31935335 Score: 80
Period size: 23 Copynumber: 3.2 Consensus size: 23
31935251 TCGTGAACGC
*
31935261 GTTCAATTATATGTTCATGAACAT
1 GTTCGATTA-ATGTTCATGAACAT
* *
31935285 GTTCGATTAATGTTCGTGAATAT
1 GTTCGATTAATGTTCATGAACAT
* *
31935308 GTTTGATTAA-GTTAAATGAACAT
1 GTTCGATTAATGTT-CATGAACAT
31935331 GTTCG
1 GTTCG
31935336 TGGATATTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
22 3 0.07
23 31 0.74
24 8 0.19
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (23 bp):
GTTCGATTAATGTTCATGAACAT
Found at i:31935988 original size:70 final size:67
Alignment explanation
Indices: 31935860--31935992 Score: 167
Period size: 70 Copynumber: 1.9 Consensus size: 67
31935850 ATAAACAATA
* * * *
31935860 TAATGGTTTTGTCTTTTAACTCAATAGGTAAATATTTATCAAAATGACATAATCTTACCTTTTAA
1 TAATGGTTTTGACTTTTAACTCAAAAGGTAAACATTTATCAAAACGACATAATCTTACCTTTTAA
31935925 CT
66 CT
* * * *
31935927 TAATGGTTTTGACTTTTAACTTTAGAAATGGTAAACATTTATCAAAACGACGTAGTTTTACCTTT
1 TAATGGTTTTGACTTTTAAC-TCA-AAA-GGTAAACATTTATCAAAACGACATAATCTTACCTTT
31935992 T
63 T
31935993 CTTATTTTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
67 19 0.35
68 2 0.04
69 2 0.04
70 32 0.58
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (67 bp):
TAATGGTTTTGACTTTTAACTCAAAAGGTAAACATTTATCAAAACGACATAATCTTACCTTTTAA
CT
Found at i:31936064 original size:31 final size:31
Alignment explanation
Indices: 31936026--31936084 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
31936016 CAAATTCTTG
*
31936026 TATTCGAGTTAAACCGAAAAACTTAATTTTT
1 TATTCGAGTTAAACCGAAAAACTCAATTTTT
* * *
31936057 TATTCGAGTTGATCCGAATAACTCAATT
1 TATTCGAGTTAAACCGAAAAACTCAATT
31936085 AACTCAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (31 bp):
TATTCGAGTTAAACCGAAAAACTCAATTTTT
Found at i:31937659 original size:23 final size:23
Alignment explanation
Indices: 31937604--31937673 Score: 94
Period size: 23 Copynumber: 3.1 Consensus size: 23
31937594 CAAAGATATG
31937604 AAATCTTAAAAGATTTG--T-TGT
1 AAATCTT-AAAGATTTGATTCTGT
31937625 -AATCTTAGAAGATTTGATTCTGT
1 AAATCTTA-AAGATTTGATTCTGT
31937648 AAATCTTAAAGATTTGATTCTGT
1 AAATCTTAAAGATTTGATTCTGT
31937671 AAA
1 AAA
31937674 ACTTTTAATT
Statistics
Matches: 44, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
19 1 0.02
20 14 0.32
22 1 0.02
23 21 0.48
24 7 0.16
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.41
Consensus pattern (23 bp):
AAATCTTAAAGATTTGATTCTGT
Found at i:31939363 original size:20 final size:20
Alignment explanation
Indices: 31939338--31939376 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
31939328 TTCGAAGATA
*
31939338 TGCAATCTTGGAAGATTTGT
1 TGCAATCTTAGAAGATTTGT
31939358 TGCAATCTTAGAAGATTTG
1 TGCAATCTTAGAAGATTTG
31939377 ATTTTGTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.38
Consensus pattern (20 bp):
TGCAATCTTAGAAGATTTGT
Found at i:31942777 original size:19 final size:19
Alignment explanation
Indices: 31942755--31942802 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
31942745 ATTTATATGT
31942755 TTTTATAAAATTTTAATAA
1 TTTTATAAAATTTTAATAA
** *
31942774 TTTTA-ATATGTTTTATTAA
1 TTTTATA-AAATTTTAATAA
31942793 TTTTATAAAA
1 TTTTATAAAA
31942803 AATTATAGTT
Statistics
Matches: 22, Mismatches: 5, Indels: 4
0.71 0.16 0.13
Matches are distributed among these distances:
18 1 0.05
19 20 0.91
20 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TTTTATAAAATTTTAATAA
Found at i:31942789 original size:39 final size:38
Alignment explanation
Indices: 31942724--31942802 Score: 90
Period size: 39 Copynumber: 2.1 Consensus size: 38
31942714 TTAGTTTTAT
* **
31942724 AATTTTATAATTTATTATATTATTTATATGTTTTTATAA
1 AATTTTATAATTTATAATATTATTTAT-TAATTTTATAA
31942763 AATTTTAATAATTT-TAATATGT-TTTATTAATTTTATAA
1 AATTTT-ATAATTTATAATAT-TATTTATTAATTTTATAA
31942801 AA
1 AA
31942803 AATTATAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
38 11 0.31
39 16 0.46
40 8 0.23
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (38 bp):
AATTTTATAATTTATAATATTATTTATTAATTTTATAA
Found at i:31942865 original size:27 final size:26
Alignment explanation
Indices: 31942835--31942912 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 26
31942825 TAATCATATT
31942835 TATTTTTTTATATTCTTTATGAGGTTA
1 TATTTTTTTATATT-TTTATGAGGTTA
* ** **
31942862 TATTAATTTTAATATTTTTAAAAATTTA
1 TATT--TTTTTATATTTTTATGAGGTTA
31942890 TGATTTTTTTATATTTTTATGAG
1 T-ATTTTTTTATATTTTTATGAG
31942913 AAATAAATAG
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
27 18 0.46
28 9 0.23
29 12 0.31
ACGTcount: A:0.29, C:0.01, G:0.08, T:0.62
Consensus pattern (26 bp):
TATTTTTTTATATTTTTATGAGGTTA
Found at i:31948286 original size:39 final size:39
Alignment explanation
Indices: 31948232--31948309 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
31948222 CACTATTCTG
31948232 CTGTAAGGTACTAACAACTGTGCGTTGTCTTTCAATTCC
1 CTGTAAGGTACTAACAACTGTGCGTTGTCTTTCAATTCC
31948271 CTGTAAGGTACTAACAACTGTGCGTTGTCTTTCAATTCC
1 CTGTAAGGTACTAACAACTGTGCGTTGTCTTTCAATTCC
31948310 TTTCCGTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (39 bp):
CTGTAAGGTACTAACAACTGTGCGTTGTCTTTCAATTCC
Found at i:31950213 original size:17 final size:17
Alignment explanation
Indices: 31950191--31950225 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
31950181 GGCAAAAGTG
31950191 TGAACATAAGACTTTAT
1 TGAACATAAGACTTTAT
31950208 TGAACATAAGACTTTAT
1 TGAACATAAGACTTTAT
31950225 T
1 T
31950226 TAAATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.37
Consensus pattern (17 bp):
TGAACATAAGACTTTAT
Found at i:31952065 original size:22 final size:22
Alignment explanation
Indices: 31952030--31952071 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
31952020 TATACAAGCA
*
31952030 ATATTACTTGAATAGTTATGAG
1 ATATTACTTGAATAATTATGAG
* *
31952052 ATATTAGTTTAATAATTATG
1 ATATTACTTGAATAATTATG
31952072 TATCTTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.45
Consensus pattern (22 bp):
ATATTACTTGAATAATTATGAG
Found at i:31952705 original size:18 final size:18
Alignment explanation
Indices: 31952670--31952705 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
31952660 TAAATTGCAG
**
31952670 ATGTTATTTCTTTTAAAA
1 ATGTTATTTCTTCCAAAA
31952688 ATGTTATTTCTTCCAAAA
1 ATGTTATTTCTTCCAAAA
31952706 TTTACGACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGTTATTTCTTCCAAAA
Found at i:31953425 original size:98 final size:97
Alignment explanation
Indices: 31953256--31953438 Score: 271
Period size: 98 Copynumber: 1.9 Consensus size: 97
31953246 GAGGATGTTA
* *
31953256 GATTATCTTGATTTAAAGAAAGATTGCACCTAGTAAGTTAAGGTGCAAAAATTTCAAAATCGAAG
1 GATTATCTTGATTTAAAGAAAAATCGCACCTAGTAAGTTAAGGTGCAAAAATTTCAAAATCGAAG
31953321 ATAAAGAAACATTGCCTCGATAAAAGGGTATTC
66 ATAAAG-AACATTGCCTCGATAAAAGGGTATTC
* * *
31953354 GATTATTTTGATTTGAAGAAAAATCGCACCTAGTAAGTTAAGGTGC-AAAATTTCAGAATTCGAA
1 GATTATCTTGATTTAAAGAAAAATCGCACCTAGTAAGTTAAGGTGCAAAAATTTCA-AAATCGAA
*
31953418 -ATAAAAGAATATTGCCTCGAT
65 GAT-AAAGAACATTGCCTCGAT
31953439 TATAAAGTTT
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
97 24 0.31
98 53 0.69
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (97 bp):
GATTATCTTGATTTAAAGAAAAATCGCACCTAGTAAGTTAAGGTGCAAAAATTTCAAAATCGAAG
ATAAAGAACATTGCCTCGATAAAAGGGTATTC
Found at i:31953640 original size:20 final size:21
Alignment explanation
Indices: 31953601--31953640 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
31953591 GATAAAGAAA
31953601 TAAAAATGACACAATTTGGAGT
1 TAAAAATGACAC-ATTTGGAGT
*
31953623 TAAAAATGAGAC-TTTGGA
1 TAAAAATGACACATTTGGA
31953641 TGCCTGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (21 bp):
TAAAAATGACACATTTGGAGT
Found at i:31953915 original size:28 final size:28
Alignment explanation
Indices: 31953827--31953924 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 28
31953817 TTCGGGATCA
* * *
31953827 AAAATGAAATTTTTGGAAGTTCAGAGAA
1 AAAATGAAATTTTTGGAAGTTTAGGGAT
* * *
31953855 AAAATGTAATTTTTGGAAGTTTGGGGGTT
1 AAAATGAAATTTTTGGAAGTTT-AGGGAT
* * *
31953884 AAAATGGAATTTTTGAAAGTTTAGGGCT
1 AAAATGAAATTTTTGGAAGTTTAGGGAT
*
31953912 AAAACGATAATTT
1 AAAATGA-AATTT
31953925 CAAGGTAAAA
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
28 29 0.52
29 27 0.48
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.35
Consensus pattern (28 bp):
AAAATGAAATTTTTGGAAGTTTAGGGAT
Found at i:31954011 original size:30 final size:30
Alignment explanation
Indices: 31953922--31954024 Score: 111
Period size: 29 Copynumber: 3.5 Consensus size: 30
31953912 AAAACGATAA
* * *
31953922 TTTCAAGGTAAAAATGGAATTTTTGA-AAG
1 TTTCGAGGTCAAAATGTAATTTTTGAGAAG
* * * *
31953951 TTTAGGGGTAAAAATATAATTTTT-AGAAG
1 TTTCGAGGTCAAAATGTAATTTTTGAGAAG
*
31953980 TTTCGATGTCAAAATGTAATTTTTGAGAAG
1 TTTCGAGGTCAAAATGTAATTTTTGAGAAG
*
31954010 TTTCAAGGTCAAAAT
1 TTTCGAGGTCAAAAT
31954025 ACAATTACTG
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
28 1 0.02
29 41 0.68
30 18 0.30
ACGTcount: A:0.39, C:0.05, G:0.19, T:0.37
Consensus pattern (30 bp):
TTTCGAGGTCAAAATGTAATTTTTGAGAAG
Found at i:31955606 original size:25 final size:27
Alignment explanation
Indices: 31955573--31955639 Score: 77
Period size: 25 Copynumber: 2.6 Consensus size: 27
31955563 TAAAAACAAA
*
31955573 CTGTGTATTGATTTCTAAAGAA-GGGT
1 CTGTATATTGATTTCTAAAGAACGGGT
* *
31955599 -TGTTTATTGATTT-TCAAGAACCGGGT
1 CTGTATATTGATTTCTAAAGAA-CGGGT
31955625 CTGTATATTGATTTC
1 CTGTATATTGATTTC
31955640 AAGAGCAGGG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 6 0.18
25 12 0.35
26 4 0.12
27 12 0.35
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.43
Consensus pattern (27 bp):
CTGTATATTGATTTCTAAAGAACGGGT
Found at i:31955624 original size:26 final size:25
Alignment explanation
Indices: 31955573--31955654 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 25
31955563 TAAAAACAAA
* *
31955573 CTGTGTATTGATTTCTAAAGAAGGGT
1 CTGTATATTGATTT-TCAAGAAGGGT
*
31955599 -TGTTTATTGATTTTCAAGAACCGGGT
1 CTGTATATTGATTTTCAAGAA--GGGT
31955625 CTGTATATTGA-TTTCAAGAGCAGGGT
1 CTGTATATTGATTTTCAAGA--AGGGT
31955651 CTGT
1 CTGT
31955655 GTGTGTCACC
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
24 6 0.12
25 12 0.25
26 20 0.42
27 9 0.19
28 1 0.02
ACGTcount: A:0.24, C:0.11, G:0.26, T:0.39
Consensus pattern (25 bp):
CTGTATATTGATTTTCAAGAAGGGT
Found at i:31956112 original size:11 final size:11
Alignment explanation
Indices: 31956098--31956139 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
31956088 CAATTATTTC
31956098 AAATTTAAACT
1 AAATTTAAACT
*
31956109 AAATTTAAATTT
1 AAATTTAAA-CT
*
31956121 AAATTTAAAGT
1 AAATTTAAACT
31956132 AAATTTAA
1 AAATTTAA
31956140 TTTTAGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (11 bp):
AAATTTAAACT
Found at i:31956118 original size:17 final size:18
Alignment explanation
Indices: 31956114--31956158 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
31956104 AAACTAAATT
*
31956114 TAAATTTAAATTTA-AAG
1 TAAATTTAAATTTAGAAA
*
31956131 TAAATTTAATTTTAGAAA
1 TAAATTTAAATTTAGAAA
31956149 TAAATTTAAA
1 TAAATTTAAA
31956159 ATTCATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42
Consensus pattern (18 bp):
TAAATTTAAATTTAGAAA
Found at i:31956119 original size:6 final size:6
Alignment explanation
Indices: 31956093--31956184 Score: 64
Period size: 6 Copynumber: 15.5 Consensus size: 6
31956083 TTTTACAATT
* *
31956093 ATTTCAA ATTTAA A-CTAA ATTTAA ATTTAA ATTTAA A-GTAA ATTTAA
1 ATTT-AA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
* * * * * * *
31956140 TTTTAGA A-ATAA ATTTAA AATTCA TTTTAA ACTTAA ATTAAA ATT
1 ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATT
31956185 GACCCAAAAT
Statistics
Matches: 64, Mismatches: 17, Indels: 9
0.71 0.19 0.10
Matches are distributed among these distances:
5 10 0.16
6 49 0.77
7 5 0.08
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.43
Consensus pattern (6 bp):
ATTTAA
Found at i:31956124 original size:23 final size:23
Alignment explanation
Indices: 31956093--31956144 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
31956083 TTTTACAATT
31956093 ATTTCAAATTTAAACTAAATTTAA
1 ATTT-AAATTTAAACTAAATTTAA
*
31956117 ATTTAAATTTAAAGTAAATTTAA
1 ATTTAAATTTAAACTAAATTTAA
*
31956140 TTTTA
1 ATTTA
31956145 GAAATAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (23 bp):
ATTTAAATTTAAACTAAATTTAA
Found at i:31956152 original size:23 final size:23
Alignment explanation
Indices: 31956093--31956152 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
31956083 TTTTACAATT
*
31956093 ATTTCAAATTTAAACTAAATTTAA
1 ATTT-AAATATAAACTAAATTTAA
* *
31956117 ATTTAAATTTAAAGTAAATTTAA
1 ATTTAAATATAAACTAAATTTAA
*
31956140 TTTTAGAA-ATAAA
1 ATTTA-AATATAAA
31956153 TTTAAAATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 26 0.81
24 6 0.19
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (23 bp):
ATTTAAATATAAACTAAATTTAA
Found at i:31956166 original size:24 final size:23
Alignment explanation
Indices: 31956139--31956184 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
31956129 AGTAAATTTA
31956139 ATTTTAGAA-ATAAATTTAAAATTC
1 ATTTTA-AACATAAA-TTAAAATTC
*
31956163 ATTTTAAACTTAAATTAAAATT
1 ATTTTAAACATAAATTAAAATT
31956185 GACCCAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTTTAAACATAAATTAAAATTC
Found at i:31956586 original size:92 final size:92
Alignment explanation
Indices: 31956434--31956899 Score: 774
Period size: 92 Copynumber: 5.1 Consensus size: 92
31956424 AAATGAGGCT
* * * *
31956434 TGATG-TTGAGGCTTCATCTTGCTCTTACTACAACTTT-AAAGAGATAAAGACTTGCTATCCAAC
1 TGATGTTTGATGCTTCATCTAGCTCTTACTTCAA-TTTCAGAGAGATAAAGACTTGCTATCCAAC
* * *
31956497 TTTACTGCAACTTCAAGAGGATAGAAAA
65 TTTACTTCAATTTCAAGAGGATAGGAAA
*
31956525 TGATGTTTGATGCTTCATCTAGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGTTATCCAACT
1 TGATGTTTGATGCTTCATCTAGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCAACT
* *
31956590 TTACTGCAACTTCAAGAGGATAGGAAA
66 TTACTTCAATTTCAAGAGGATAGGAAA
*
31956617 TGATATTTGATGCTTCATCTAGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCAACT
1 TGATGTTTGATGCTTCATCTAGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCAACT
31956682 TTACTTCAATTTCAAGAGGATAGGAAA
66 TTACTTCAATTTCAAGAGGATAGGAAA
*
31956709 TGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCAACT
1 TGATGTTTGATGCTTCATCTAGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCAACT
31956774 TTACTTCAATTTCAAGAGGATAGGAAA
66 TTACTTCAATTTCAAGAGGATAGGAAA
* * *
31956801 TGATATTTTATGCTTCATCTAGCTCTTACTTAAATTTCAGAGAGATAAAGACTTGCTATCCAACT
1 TGATGTTTGATGCTTCATCTAGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCAACT
31956866 TTACTTCAATTTCAAGAGGATAGGAAA
66 TTACTTCAATTTCAAGAGGATAGGAAA
31956893 TGATGTT
1 TGATGTT
31956900 ATTTAAATCT
Statistics
Matches: 356, Mismatches: 17, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
91 8 0.02
92 348 0.98
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (92 bp):
TGATGTTTGATGCTTCATCTAGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGCTATCCAACT
TTACTTCAATTTCAAGAGGATAGGAAA
Found at i:31956744 original size:52 final size:50
Alignment explanation
Indices: 31956682--31956901 Score: 151
Period size: 40 Copynumber: 4.7 Consensus size: 50
31956672 CTATCCAACT
31956682 TTACTTCAATTTCAAGAGGATAGGAAATGATGTTTGATGCTTTATCTAGCTC
1 TTACTTCAATTTCAAGAGGATAGGAAATGAT-TTT-ATGCTTTATCTAGCTC
* * *
31956734 TTACTTCAATTTC-AGAGAGAT---AAA-GA--CT-TGC--TATCCAACT-
1 TTACTTCAATTTCAAGAG-GATAGGAAATGATTTTATGCTTTATCTAGCTC
*
31956774 TTACTTCAATTTCAAGAGGATAGGAAATGATATTTTATGCTTCATCTAGCTC
1 TTACTTCAATTTCAAGAGGATAGGAAATG--ATTTTATGCTTTATCTAGCTC
* * * *
31956826 TTACTTAAATTTC-AGAGAGAT---AAA-GA--CT-TGC--TATCCAACT-
1 TTACTTCAATTTCAAGAG-GATAGGAAATGATTTTATGCTTTATCTAGCTC
*
31956866 TTACTTCAATTTCAAGAGGATAGGAAATGATGTTAT
1 TTACTTCAATTTCAAGAGGATAGGAAATGATTTTAT
31956902 TTAAATCTGA
Statistics
Matches: 131, Mismatches: 14, Indels: 51
0.67 0.07 0.26
Matches are distributed among these distances:
40 31 0.24
41 21 0.16
43 12 0.09
44 4 0.03
45 1 0.01
46 3 0.02
47 1 0.01
48 4 0.03
49 9 0.07
51 14 0.11
52 31 0.24
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (50 bp):
TTACTTCAATTTCAAGAGGATAGGAAATGATTTTATGCTTTATCTAGCTC
Found at i:31959173 original size:8 final size:8
Alignment explanation
Indices: 31959162--31959191 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
31959152 TCTCTCTCTC
31959162 TTTTTGAT
1 TTTTTGAT
31959170 TTTTTGATT
1 TTTTTGA-T
31959179 TTTTTGAT
1 TTTTTGAT
31959187 TTTTT
1 TTTTT
31959192 TTATTTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.80
Consensus pattern (8 bp):
TTTTTGAT
Found at i:31959174 original size:9 final size:9
Alignment explanation
Indices: 31959162--31959236 Score: 68
Period size: 9 Copynumber: 8.6 Consensus size: 9
31959152 TCTCTCTCTC
31959162 TTTTTGA-T
1 TTTTTGATT
31959170 TTTTTGATT
1 TTTTTGATT
31959179 TTTTTGATT
1 TTTTTGATT
*
31959188 TTTTTTATT
1 TTTTTGATT
**
31959197 TTTCTTTCTT
1 TTT-TTGATT
31959207 TTTTT--TT
1 TTTTTGATT
*
31959214 TTTTT-TTCT
1 TTTTTGAT-T
31959223 TTTTTGATT
1 TTTTTGATT
31959232 TTTTT
1 TTTTT
31959237 TTGATCACGC
Statistics
Matches: 59, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
7 7 0.12
8 8 0.14
9 35 0.59
10 9 0.15
ACGTcount: A:0.07, C:0.04, G:0.05, T:0.84
Consensus pattern (9 bp):
TTTTTGATT
Found at i:31959184 original size:17 final size:17
Alignment explanation
Indices: 31959162--31959236 Score: 69
Period size: 17 Copynumber: 4.3 Consensus size: 17
31959152 TCTCTCTCTC
31959162 TTTTTGATTTTTTGATT
1 TTTTTGATTTTTTGATT
*
31959179 TTTTTGATTTTTTTTATT
1 TTTTTGA-TTTTTTGATT
** **
31959197 TTTCTTTCTTTTTTTTTT
1 TTT-TTGATTTTTTGATT
**
31959215 TTTTTTCTTTTTTGATT
1 TTTTTGATTTTTTGATT
31959232 TTTTT
1 TTTTT
31959237 TTGATCACGC
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
17 24 0.48
18 24 0.48
19 2 0.04
ACGTcount: A:0.07, C:0.04, G:0.05, T:0.84
Consensus pattern (17 bp):
TTTTTGATTTTTTGATT
Found at i:31959190 original size:1 final size:1
Alignment explanation
Indices: 31959186--31959238 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
31959176 ATTTTTTTGA
* * * * **
31959186 TTTTTTTTATTTTTCTTTCTTTTTTTTTTTTTTTTCTTTTTTGATTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
31959239 GATCACGCGT
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.04, C:0.06, G:0.02, T:0.89
Consensus pattern (1 bp):
T
Found at i:31964625 original size:20 final size:21
Alignment explanation
Indices: 31964586--31964625 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
31964576 GATAAAGAAA
31964586 TAAAAATGACACAATTTGGAGT
1 TAAAAATGACAC-ATTTGGAGT
*
31964608 TAAAAATGAGAC-TTTGGA
1 TAAAAATGACACATTTGGA
31964626 TGCCCGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (21 bp):
TAAAAATGACACATTTGGAGT
Found at i:31964651 original size:28 final size:28
Alignment explanation
Indices: 31964620--31964681 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
31964610 AAAATGAGAC
** *
31964620 TTTGGATGCCCGGGGGCAAAATGGTAAT
1 TTTGGATGCCCAAGAGCAAAATGGTAAT
* * *
31964648 TTTGAATTCTCAAGAGCAAAATGGTAAT
1 TTTGGATGCCCAAGAGCAAAATGGTAAT
31964676 TTTGGA
1 TTTGGA
31964682 AAAAATTTAG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.31
Consensus pattern (28 bp):
TTTGGATGCCCAAGAGCAAAATGGTAAT
Found at i:31964736 original size:28 final size:30
Alignment explanation
Indices: 31964665--31964737 Score: 73
Period size: 28 Copynumber: 2.5 Consensus size: 30
31964655 TCTCAAGAGC
31964665 AAAATGGTAATTTTGGAAAAAATTTAGGGTTA
1 AAAATGGTAATTTT-G-AAAAATTTAGGGTTA
* *
31964697 AAAATGAT-ATTTT-AAACATTTAAGGG-T-
1 AAAATGGTAATTTTGAAAAATTT-AGGGTTA
31964724 AAAATGGTAATTTT
1 AAAATGGTAATTTT
31964738 TGGAAGAATC
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
27 7 0.19
28 13 0.36
29 4 0.11
31 5 0.14
32 7 0.19
ACGTcount: A:0.44, C:0.01, G:0.18, T:0.37
Consensus pattern (30 bp):
AAAATGGTAATTTTGAAAAATTTAGGGTTA
Found at i:31964796 original size:29 final size:29
Alignment explanation
Indices: 31964719--31964910 Score: 103
Period size: 28 Copynumber: 6.7 Consensus size: 29
31964709 TAAACATTTA
* *
31964719 AGGGTAAAATGGTAATTTTTGGAAGAATCG
1 AGGGCAAAATGGTAATTTTTGGAAG-TTCG
* * * * *
31964749 -GGATCAAAACGGGACTTTTTGGATGTTCG
1 AGG-GCAAAATGGTAATTTTTGGAAGTTCG
**
31964778 AGGGCAAAATGGTAA-TTTTGGACTTTCG
1 AGGGCAAAATGGTAATTTTTGGAAGTTCG
* * *
31964806 -GGATCAAAAAT-GAAATTTTTGGAAGTT-T
1 AGG-GC-AAAATGGTAATTTTTGGAAGTTCG
* * *
31964834 AGGGGGAAAAT-GTAATTTTTGAAAGTTTG
1 A-GGGCAAAATGGTAATTTTTGGAAGTTCG
*
31964863 AGGGTCAAAAATGG-AATTTTTGAAAGTTC-
1 AGGG-C-AAAATGGTAATTTTTGGAAGTTCG
* *
31964892 AGGGTAAAACGGTAATTTT
1 AGGGCAAAATGGTAATTTT
31964911 AAGGTAAAAA
Statistics
Matches: 123, Mismatches: 27, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
27 8 0.07
28 43 0.35
29 32 0.26
30 39 0.32
31 1 0.01
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (29 bp):
AGGGCAAAATGGTAATTTTTGGAAGTTCG
Found at i:31964843 original size:28 final size:29
Alignment explanation
Indices: 31964809--31965032 Score: 136
Period size: 30 Copynumber: 8.0 Consensus size: 29
31964799 ACTTTCGGGA
*
31964809 TCAAAAATGAAATTTTTGGAAGTTTAGGG
1 TCAAAAATGAAATTTTTGAAAGTTTAGGG
** *
31964838 -GGAAAATGTAATTTTTGAAAGTTTGAGGG
1 TCAAAAATGAAATTTTTGAAAGTTT-AGGG
* *
31964867 TCAAAAATGGAATTTTTGAAAGTTCAGGG
1 TCAAAAATGAAATTTTTGAAAGTTTAGGG
** *
31964896 T-AAAACGGTAA-TTTT---A----A-GG
1 TCAAAAATGAAATTTTTGAAAGTTTAGGG
* * *
31964915 TAAAAAATGGAATTTTTGAAAATTTAGGGG
1 TCAAAAATGAAATTTTTGAAAGTTTA-GGG
* *
31964945 T-AAAAATGTAATTTTTGGAAATTTTAGGG
1 TCAAAAATGAAATTTTT-GAAAGTTTAGGG
*
31964974 TC-AAAATGTAATTTTTGAGAAGTTTTAGGG
1 TCAAAAATGAAATTTTTGA-AAG-TTTAGGG
*
31965004 TC-AAAAT-ATAATTTTTGGATAGTTTAGGG
1 TCAAAAATGA-AATTTTT-GAAAGTTTAGGG
31965033 ACCTTCAAGG
Statistics
Matches: 157, Mismatches: 19, Indels: 38
0.73 0.09 0.18
Matches are distributed among these distances:
19 3 0.02
20 8 0.05
21 4 0.03
24 2 0.01
27 4 0.03
28 30 0.19
29 50 0.32
30 54 0.34
31 2 0.01
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.36
Consensus pattern (29 bp):
TCAAAAATGAAATTTTTGAAAGTTTAGGG
Found at i:31964881 original size:30 final size:29
Alignment explanation
Indices: 31964809--31965032 Score: 147
Period size: 29 Copynumber: 8.0 Consensus size: 29
31964799 ACTTTCGGGA
* *
31964809 TCAAAAATGAAATTTTTGGAAGTTTAGGG
1 TCAAAAATGGAATTTTTGAAAGTTTAGGG
** *
31964838 -GGAAAATGTAATTTTTGAAAGTTTGAGGG
1 TCAAAAATGGAATTTTTGAAAGTTT-AGGG
*
31964867 TCAAAAATGGAATTTTTGAAAGTTCAGGG
1 TCAAAAATGGAATTTTTGAAAGTTTAGGG
*
31964896 T--AAAACGGTAA-TTTT---A----A-GG
1 TCAAAAATGG-AATTTTTGAAAGTTTAGGG
* *
31964915 TAAAAAATGGAATTTTTGAAAATTTAGGGG
1 TCAAAAATGGAATTTTTGAAAGTTTA-GGG
* *
31964945 T-AAAAATGTAATTTTTGGAAATTTTAGGG
1 TCAAAAATGGAATTTTT-GAAAGTTTAGGG
*
31964974 TC-AAAATGTAATTTTTGAGAAGTTTTAGGG
1 TCAAAAATGGAATTTTTGA-AAG-TTTAGGG
*
31965004 TCAAAATAT--AATTTTTGGATAGTTTAGGG
1 TCAAAA-ATGGAATTTTT-GAAAGTTTAGGG
31965033 ACCTTCAAGG
Statistics
Matches: 159, Mismatches: 14, Indels: 44
0.73 0.06 0.20
Matches are distributed among these distances:
19 3 0.02
20 3 0.02
21 10 0.06
24 2 0.01
27 10 0.06
28 25 0.16
29 50 0.31
30 49 0.31
31 5 0.03
32 2 0.01
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.36
Consensus pattern (29 bp):
TCAAAAATGGAATTTTTGAAAGTTTAGGG
Found at i:31964890 original size:58 final size:56
Alignment explanation
Indices: 31964783--31965020 Score: 181
Period size: 58 Copynumber: 4.3 Consensus size: 56
31964773 GTTCGAGGGC
* * * * * *
31964783 AAAATGGTAA-TTTTGGACTTTCGGGATCAAAAATGAAATTTTTGGAAGTTTAGGGGG
1 AAAAT-GTAATTTTTGAAATTTAGGG-TCAAAAATGGAATTTTTGAAAGTTTAGGGGA
* *
31964840 AAAATGTAATTTTTGAAAGTTTGAGGGTCAAAAATGGAATTTTTGAAAGTTCAGGGTA
1 AAAATGTAATTTTTGAAA-TTT-AGGGTCAAAAATGGAATTTTTGAAAGTTTAGGGGA
** * *
31964898 AAACGGTAA-TTTT---A---A-GGTAAAAAATGGAATTTTTGAAAATTTAGGGGTA
1 AAAATGTAATTTTTGAAATTTAGGGTCAAAAATGGAATTTTTGAAAGTTTAGGGG-A
* **
31964947 AAAATGTAATTTTTGGAAATTTTAGGGTC-AAAATGTAATTTTTGAGAAGTTTTAGGGTC
1 AAAATGTAATTTTT-GAAA-TTTAGGGTCAAAAATGGAATTTTTGA-AAG-TTTAGGGGA
*
31965006 AAAATATAATTTTTG
1 AAAATGTAATTTTTG
31965021 GATAGTTTAG
Statistics
Matches: 143, Mismatches: 22, Indels: 31
0.73 0.11 0.16
Matches are distributed among these distances:
48 28 0.20
49 9 0.06
50 4 0.03
54 2 0.01
56 4 0.03
57 15 0.10
58 53 0.37
59 21 0.15
60 7 0.05
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.36
Consensus pattern (56 bp):
AAAATGTAATTTTTGAAATTTAGGGTCAAAAATGGAATTTTTGAAAGTTTAGGGGA
Found at i:31964974 original size:78 final size:78
Alignment explanation
Indices: 31964840--31964988 Score: 196
Period size: 78 Copynumber: 1.9 Consensus size: 78
31964830 GTTTAGGGGG
* *
31964840 AAAATGTAATTTTTGAAAGTTTGAGGGTCAAAAATGGAATTTTTGAAAGTTCAGGGT-AAAACGG
1 AAAATGGAATTTTTGAAAATTTGAGGGTCAAAAATGGAATTTTTGAAAGTTCAGGGTCAAAA-GG
31964904 TAATTTTAAGGTAA
65 TAATTTTAAGGTAA
* * * *
31964918 AAAATGGAATTTTTGAAAATTT-AGGGGT-AAAAATGTAATTTTTGGAAATTTTAGGGTCAAAAT
1 AAAATGGAATTTTTGAAAATTTGA-GGGTCAAAAATGGAATTTTT-GAAAGTTCAGGGTCAAAAG
31964981 GTAATTTT
64 GTAATTTT
31964989 TGAGAAGTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
77 15 0.24
78 43 0.69
79 4 0.06
ACGTcount: A:0.40, C:0.03, G:0.21, T:0.36
Consensus pattern (78 bp):
AAAATGGAATTTTTGAAAATTTGAGGGTCAAAAATGGAATTTTTGAAAGTTCAGGGTCAAAAGGT
AATTTTAAGGTAA
Found at i:31965016 original size:59 final size:58
Alignment explanation
Indices: 31964918--31965032 Score: 151
Period size: 59 Copynumber: 2.0 Consensus size: 58
31964908 TTTAAGGTAA
* *
31964918 AAAATGGAATTTTTGAAAATTTAGGGGTAAAAATGTAATTTTTGGAAATTTTAGGGTC
1 AAAATGGAATTTTTGAAAATTTAGGGGTAAAAATATAATTTTTGGAAAGTTTAGGGTC
* * * *
31964976 AAAATGTAATTTTTGAGAAGTTTTA-GGGTCAAAATATAATTTTTGGATAGTTTAGGG
1 AAAATGGAATTTTTGA-AA-ATTTAGGGGTAAAAATATAATTTTTGGAAAGTTTAGGG
31965033 ACCTTCAAGG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
58 15 0.31
59 30 0.61
60 4 0.08
ACGTcount: A:0.37, C:0.02, G:0.23, T:0.39
Consensus pattern (58 bp):
AAAATGGAATTTTTGAAAATTTAGGGGTAAAAATATAATTTTTGGAAAGTTTAGGGTC
Found at i:31966246 original size:16 final size:16
Alignment explanation
Indices: 31966213--31966242 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
31966203 CATTGTCATC
31966213 ATTATTATTAGTAATA
1 ATTATTATTAGTAATA
31966229 ATTATTATTA-TAAT
1 ATTATTATTAGTAAT
31966243 TAATAAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
ATTATTATTAGTAATA
Found at i:31966637 original size:26 final size:26
Alignment explanation
Indices: 31966558--31966639 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 26
31966548 TGAAAACAAA
* *
31966558 CTGTGTATTGATTTCTAA-AGAAGGGT
1 CTGTATATTGATTTC-AAGAGCAGGGT
* * * *
31966584 -TGTTTATTGATTTTCAAGAACTGAGT
1 CTGTATATTGA-TTTCAAGAGCAGGGT
31966610 CTGTATATTGATTTCAAGAGCAGGGT
1 CTGTATATTGATTTCAAGAGCAGGGT
31966636 CTGT
1 CTGT
31966640 GTGTGTCACC
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
25 11 0.25
26 24 0.55
27 9 0.20
ACGTcount: A:0.26, C:0.10, G:0.24, T:0.40
Consensus pattern (26 bp):
CTGTATATTGATTTCAAGAGCAGGGT
Found at i:31967099 original size:6 final size:6
Alignment explanation
Indices: 31967052--31967182 Score: 72
Period size: 6 Copynumber: 22.3 Consensus size: 6
31967042 TTTTGGGCTT
* * * *
31967052 TTTAAT TTTAAT TTTAAA ATT--A TTTCAAA TTTAAA -CTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA
** * * * *
31967098 TTTAAA AATGAA TTTAAA TTTAAA TTTAAA -GTAAA TTTAAT TTTAGA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
** * * * * *
31967145 GATAAA TTTAAA ATTCAT TTTAAA CTTAAA TTAAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT
31967183 GACCCAAAAT
Statistics
Matches: 90, Mismatches: 30, Indels: 10
0.69 0.23 0.08
Matches are distributed among these distances:
4 3 0.03
5 8 0.09
6 75 0.83
7 4 0.04
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (6 bp):
TTTAAA
Found at i:31967100 original size:35 final size:35
Alignment explanation
Indices: 31967055--31967121 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
31967045 TGGGCTTTTT
* * *
31967055 AATTTTAATTTTAAAAT-TATTTCAAATTTAAACTA
1 AATTTAAATTTAAAAATGAATTT-AAATTTAAACTA
31967090 AATTTAAATTTAAAAATGAATTTAAATTTAAA
1 AATTTAAATTTAAAAATGAATTTAAATTTAAA
31967122 TTTAAAGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 24 0.86
36 4 0.14
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (35 bp):
AATTTAAATTTAAAAATGAATTTAAATTTAAACTA
Found at i:31967123 original size:41 final size:41
Alignment explanation
Indices: 31967073--31967182 Score: 121
Period size: 41 Copynumber: 2.6 Consensus size: 41
31967063 TTTTAAAATT
*
31967073 ATTTCAAATTTAAACTAAATTTAAATTTAAAAATGAATTTAA
1 ATTT-AAATTTAAACTAAATTTAAATTTAAAAATAAATTTAA
* * * *
31967115 ATTTAAATTTAAAGTAAATTTAATTTTAGAGATAAATTTAA
1 ATTTAAATTTAAACTAAATTTAAATTTAAAAATAAATTTAA
* * * *
31967156 AATTCATTTTAAACTTAAATTAAAATT
1 ATTTAAATTTAAAC-TAAATTTAAATT
31967183 GACCCAAAAT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 42 0.75
42 14 0.25
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43
Consensus pattern (41 bp):
ATTTAAATTTAAACTAAATTTAAATTTAAAAATAAATTTAA
Found at i:31967134 original size:17 final size:18
Alignment explanation
Indices: 31967112--31967156 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
31967102 AAAATGAATT
31967112 TAAATTTAAATTTAAAG-
1 TAAATTTAAATTTAAAGA
* *
31967129 TAAATTTAATTTTAGAGA
1 TAAATTTAAATTTAAAGA
31967147 TAAATTTAAA
1 TAAATTTAAA
31967157 ATTCATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (18 bp):
TAAATTTAAATTTAAAGA
Found at i:31968241 original size:19 final size:18
Alignment explanation
Indices: 31968202--31968245 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 18
31968192 CTGGATCAAT
31968202 GTAAAAAAAAAAATTACTA
1 GTAAAAAAAAAAA-TACTA
31968221 GTCAAAAAAAAAAA-ACTTA
1 GT-AAAAAAAAAAATAC-TA
31968240 GTAAAA
1 GTAAAA
31968246 TGTCTTACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 6 0.26
19 6 0.26
20 11 0.48
ACGTcount: A:0.68, C:0.07, G:0.07, T:0.18
Consensus pattern (18 bp):
GTAAAAAAAAAAATACTA
Found at i:31972219 original size:53 final size:53
Alignment explanation
Indices: 31972139--31972328 Score: 263
Period size: 53 Copynumber: 3.6 Consensus size: 53
31972129 GTAAATGCAA
* * * ** ** *
31972139 AAAGGTCCGATGACTTTGTGTCATCGTGAGTTATATGAATAGTAACAAGGATT
1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTCATACGAATCCTATTACGGATT
** * *
31972192 AAAGGTCTAATGACTCTATATCATCGTGAGTCATACGAATCCTATTACGGATT
1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTCATACGAATCCTATTACGGATT
31972245 AAAGGTCCGATGACTCTGTGTCATCGTGAGTCATACGAATCCTATTACGGATT
1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTCATACGAATCCTATTACGGATT
*
31972298 AAAGGTCCGATGACTCTGTGTCATAGTGAGT
1 AAAGGTCCGATGACTCTGTGTCATCGTGAGT
31972329 TATTAAATGT
Statistics
Matches: 120, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 120 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (53 bp):
AAAGGTCCGATGACTCTGTGTCATCGTGAGTCATACGAATCCTATTACGGATT
Found at i:31972945 original size:24 final size:25
Alignment explanation
Indices: 31972913--31972960 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
31972903 GTTGAATAGT
*
31972913 AAGTATCGGTA-GTTTTGTACTTGA
1 AAGTATCGGTAGGTTGTGTACTTGA
31972937 AAGTATCGGTAGGTTGTGTACTTG
1 AAGTATCGGTAGGTTGTGTACTTG
31972961 TATCGGTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.23, C:0.08, G:0.29, T:0.40
Consensus pattern (25 bp):
AAGTATCGGTAGGTTGTGTACTTGA
Found at i:31973042 original size:21 final size:22
Alignment explanation
Indices: 31973010--31973065 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
31973000 GGAGTTTTTA
*
31973010 GTATTAGTAGAAGTAAT-ACTT
1 GTATTGGTAGAAGTAATCACTT
*
31973031 GT-TTCGGTAGAAG-AGTCACTT
1 GTATT-GGTAGAAGTAATCACTT
31973052 GTATTGGTAGAAGT
1 GTATTGGTAGAAGT
31973066 CTACACTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
20 4 0.14
21 23 0.79
22 2 0.07
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (22 bp):
GTATTGGTAGAAGTAATCACTT
Found at i:31976637 original size:62 final size:60
Alignment explanation
Indices: 31976451--31976644 Score: 246
Period size: 61 Copynumber: 3.2 Consensus size: 60
31976441 TTAATATAAT
* *
31976451 ATTTGGTACTTGAACTTGACATTTTTTCCTAATTTGGTACTTAAACATTTTTTTA-ACTCA
1 ATTTGGTACCTGAACTTGACATTTTTTCCTAATTTGGTACCTAAAC-TTTTTTTAGACTCA
* * * * *
31976511 ATTTGATACCTAAACTTGACCCTTTTTTCCTAATTTGGTACCTAAACTTTTTTTGGACCCA
1 ATTTGGTACCTGAACTTGA-CATTTTTTCCTAATTTGGTACCTAAACTTTTTTTAGACTCA
* * * *
31976572 ATTTGGTACCTGAACTTGGCATTTTTTTTCTAATTTGGTACCTAAGCTTTTTTTTAGATTCA
1 ATTTGGTACCTGAACTTGACA-TTTTTTCCTAATTTGGTACCTAAAC-TTTTTTTAGACTCA
31976634 ATTTGGTACCT
1 ATTTGGTACCT
31976645 AAATTTATTA
Statistics
Matches: 114, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
60 24 0.21
61 68 0.60
62 22 0.19
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.47
Consensus pattern (60 bp):
ATTTGGTACCTGAACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTAGACTCA
Found at i:31976715 original size:23 final size:23
Alignment explanation
Indices: 31976685--31976731 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
31976675 ATATAATTAA
31976685 GGTGTTGAAATTTTTTTTGTTAT
1 GGTGTTGAAATTTTTTTTGTTAT
31976708 GGTGTTGAAATTTTTTTTGTTAT
1 GGTGTTGAAATTTTTTTTGTTAT
31976731 G
1 G
31976732 CTACAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.23, T:0.60
Consensus pattern (23 bp):
GGTGTTGAAATTTTTTTTGTTAT
Found at i:31976908 original size:32 final size:31
Alignment explanation
Indices: 31976871--31976939 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
31976861 GAACCCCAAA
** *
31976871 AAGTTTAAGTACCGACTTAAAAAAAAAGTGTC
1 AAGTTTAAGTACAAAATT-AAAAAAAAGTGTC
* *
31976903 AAGTTTAGGTACAAAATTAAGAAAAAGTGTC
1 AAGTTTAAGTACAAAATTAAAAAAAAGTGTC
31976934 AAGTTT
1 AAGTTT
31976940 GATTACCAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 18 0.56
32 14 0.44
ACGTcount: A:0.46, C:0.09, G:0.17, T:0.28
Consensus pattern (31 bp):
AAGTTTAAGTACAAAATTAAAAAAAAGTGTC
Found at i:31978494 original size:31 final size:31
Alignment explanation
Indices: 31978453--31978537 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
31978443 AACTTAACAA
* *
31978453 TTCAATGACTTAAATAAAAACTTCTGGATAG
1 TTCAGTGACTTAAATAAAAACTTCTGAATAG
*
31978484 TTCAGTGACTTAAATAAAAACTTTTGAATAG
1 TTCAGTGACTTAAATAAAAACTTCTGAATAG
* * *
31978515 TTCAGTAACTTCAATGAAAACTT
1 TTCAGTGACTTAAATAAAAACTT
31978538 TAATGATCGA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (31 bp):
TTCAGTGACTTAAATAAAAACTTCTGAATAG
Found at i:31982321 original size:26 final size:27
Alignment explanation
Indices: 31982292--31982359 Score: 88
Period size: 26 Copynumber: 2.6 Consensus size: 27
31982282 ATTTTAAAAT
31982292 TTTTAAAAAATTAAATAAAAAAATT-A
1 TTTTAAAAAATTAAATAAAAAAATTCA
*
31982318 TTTTAAAAAAAT-AA-AAAAAAATTCA
1 TTTTAAAAAATTAAATAAAAAAATTCA
*
31982343 TTTTAAAAGAGTTAAAT
1 TTTTAAAA-AATTAAAT
31982360 CCCTGCAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
24 9 0.26
25 11 0.31
26 13 0.37
27 2 0.06
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (27 bp):
TTTTAAAAAATTAAATAAAAAAATTCA
Found at i:31982325 original size:25 final size:25
Alignment explanation
Indices: 31982287--31982359 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 25
31982277 TTAAAATTTT
*
31982287 AAAATT-TTTAAAAAATTAAATAAA
1 AAAATTATTTTAAAAATTAAATAAA
*
31982311 AAAATTATTTTAAAAA--AATAAAAA
1 AAAATTATTTTAAAAATTAA-ATAAA
31982335 AAAATTCATTTTAAAAGAGTTAAAT
1 AAAATT-ATTTTAAAA-A-TTAAAT
31982360 CCCTGCAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
23 2 0.05
24 16 0.41
25 17 0.44
26 1 0.03
28 1 0.03
29 2 0.05
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (25 bp):
AAAATTATTTTAAAAATTAAATAAA
Found at i:31982452 original size:5 final size:5
Alignment explanation
Indices: 31982442--31982470 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
31982432 GTGCGGCCCC
31982442 CCTTG CCTTG CCTTG CCTTG CCTTG CCTT
1 CCTTG CCTTG CCTTG CCTTG CCTTG CCTT
31982471 TTGTCCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.41, G:0.17, T:0.41
Consensus pattern (5 bp):
CCTTG
Found at i:31984182 original size:3 final size:3
Alignment explanation
Indices: 31984174--31984211 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
31984164 GACCCAAATT
31984174 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
31984212 TATTATTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:31984216 original size:3 final size:3
Alignment explanation
Indices: 31984210--31984246 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
31984200 CATCATCATC
31984210 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
31984247 GGGTTTCATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:31984919 original size:22 final size:23
Alignment explanation
Indices: 31984876--31984920 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
31984866 TTTTCATTAA
*
31984876 AAAAAGAAAAAGTTTATATTTTT
1 AAAAAGAAAAAGTATATATTTTT
*
31984899 AAAAATAAAAA-TATAT-TTTTT
1 AAAAAGAAAAAGTATATATTTTT
31984920 A
1 A
31984921 GTTATTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 4 0.20
23 10 0.50
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (23 bp):
AAAAAGAAAAAGTATATATTTTT
Found at i:31984959 original size:150 final size:152
Alignment explanation
Indices: 31984785--31985172 Score: 615
Period size: 151 Copynumber: 2.6 Consensus size: 152
31984775 GGTTTTTTAG
31984785 AAAAGTTTAAATTTTTAAACAAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTAGATT
1 AAAAGTTTAAATTTTTAAACAAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTAGATT
*
31984850 TTTAAG-AAAGTAGTGATTTTCATTAAAAAA-AGAA-AAAGTTTATATTTTTAAAAATAAAAATA
66 TTTAAGTAAAGTAGTGATTTTCATTAAAAAAGA-AAGAAAATTTATATTTTTAAAAATAAAAATA
31984912 TATTTTTTAGTTATTTTTAAAGA
130 TATTTTTTAGTTATTTTTAAAGA
* * * *
31984935 AAAAGTTTAAATTTTTAAATAAAGTTTTTA-GTTTTTTAACTATTTCGAAATAAAAGTTTGGATT
1 AAAAGTTTAAATTTTTAAACAAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTAGATT
* * *
31984999 TTTAAGTAAAGTAATGATTTTTATTAAAAAAGAAAGAAAATTTATATTTTTAAAAATAAAAATCT
66 TTTAAGTAAAGTAGTGATTTTCATTAAAAAAGAAAGAAAATTTATATTTTTAAAAATAAAAATAT
*
31985064 GTTTTTTAGTTATTTTTAAAGA
131 ATTTTTTAGTTATTTTTAAAGA
*
31985086 AAAAGTTTAAATTTTTAAACAAAGTTTTGCTTTTTTTTTAACTATTTCGAAATAAAAGTTTTA-A
1 AAAAGTTTAAATTTTTAAACAAAGTTTTG-ATTTTTTTTAACTATTTCGAAATAAAAG-TTTAGA
*
31985150 TTTTGAAGTAAAGTAGTGATTTT
64 TTTTTAAGTAAAGTAGTGATTTT
31985173 ATTTTAATCA
Statistics
Matches: 216, Mismatches: 16, Indels: 9
0.90 0.07 0.04
Matches are distributed among these distances:
149 38 0.18
150 52 0.24
151 76 0.35
153 47 0.22
154 3 0.01
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.45
Consensus pattern (152 bp):
AAAAGTTTAAATTTTTAAACAAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAAGTTTAGATT
TTTAAGTAAAGTAGTGATTTTCATTAAAAAAGAAAGAAAATTTATATTTTTAAAAATAAAAATAT
ATTTTTTAGTTATTTTTAAAGA
Found at i:31986536 original size:241 final size:240
Alignment explanation
Indices: 31986219--31986697 Score: 703
Period size: 241 Copynumber: 2.0 Consensus size: 240
31986209 ATCATAATAT
*
31986219 TGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAACTTTTA
1 TGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTAAATTCATTAGTAACTTTTA
* * *
31986284 GGGTTTTTTTTTTAAGATTCTAAAATAGAATTACTTTTAAGAATTGAAGGTATTTTACTAGAATT
66 GGG-TTTTTTTTTAAGATTCTAAAATAAAATTAATTTTAAGAATTGAAAGTATTTTACTAGAATT
* **
31986349 ATTTAAATAT-CTTTTAGGATTCTCGTTAGAAGTAAAAATTTCTAATTCAAGTTTTAAATTAGAT
130 ATTTAAATATAC-TTTAGGATTCTCATTAGAAGTAAAAAGATCTAATTCAAGTTTTAAATTAGAT
* ** *
31986413 AAGTTTGGTGGACACGTCTTAGTCAAGTTACAGGTAAATCGGAGTAA
194 AAGTGTGGTAAACACGTCTTAGTCAAGTTACAAGTAAATCGGAGTAA
* *
31986460 TGATAAAATATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTAAATTCATTAGTAATTTTTT
1 TGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTAAATTCATTAGTAA---CTT
*
31986525 TTA-GG-TTTTTTTTAGGATTCTAAAATAAAATTAATTTTAAGAATTGAAAGTATTTTACTAGAA
63 TTAGGGTTTTTTTTTAAGATTCTAAAATAAAATTAATTTTAAGAATTGAAAGTATTTTACTAGAA
** * * * *
31986588 TTATTTAGGTATACTTTAGGTTTCTTATTAGGAGTAAAAAGATCTAATTTAAGTTTTAAATTAGA
128 TTATTTAAATATACTTTAGGATTCTCATTAGAAGTAAAAAGATCTAATTCAAGTTTTAAATTAGA
*
31986653 TAAGTGTGGTAAACACGTCTTAGTCAAGTTACAAGTAAATTGGAG
193 TAAGTGTGGTAAACACGTCTTAGTCAAGTTACAAGTAAATCGGAG
31986698 ATATTTTTTA
Statistics
Matches: 213, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
241 205 0.96
242 1 0.00
243 2 0.01
244 5 0.02
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.42
Consensus pattern (240 bp):
TGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTAAATTCATTAGTAACTTTTA
GGGTTTTTTTTTAAGATTCTAAAATAAAATTAATTTTAAGAATTGAAAGTATTTTACTAGAATTA
TTTAAATATACTTTAGGATTCTCATTAGAAGTAAAAAGATCTAATTCAAGTTTTAAATTAGATAA
GTGTGGTAAACACGTCTTAGTCAAGTTACAAGTAAATCGGAGTAA
Found at i:31989952 original size:8 final size:8
Alignment explanation
Indices: 31989939--31989988 Score: 55
Period size: 8 Copynumber: 6.2 Consensus size: 8
31989929 GTGCCCCAAT
*
31989939 TTCATTTA
1 TTCATTCA
*
31989947 TTCATTTA
1 TTCATTCA
*
31989955 CTCATTCA
1 TTCATTCA
*
31989963 TTCACTCA
1 TTCATTCA
31989971 TTCATTCA
1 TTCATTCA
*
31989979 TTCACTCA
1 TTCATTCA
31989987 TT
1 TT
31989989 TGCTCATTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.24, C:0.26, G:0.00, T:0.50
Consensus pattern (8 bp):
TTCATTCA
Done.