Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 107 of 135
Found at i:32700319 original size:30 final size:30
Alignment explanation
Indices: 32700194--32700358 Score: 139
Period size: 30 Copynumber: 5.6 Consensus size: 30
32700184 AAAATCGGGA
*
32700194 TCAAAAATAG-AATTTTTGGAAG-TCCGAAGG
1 TCAAAAAT-GTAATTTTTGGAAGTTTC-AAGG
* **
32700224 T--AAAATGGTAATTTTTGCAAGTTTCGGGG
1 TCAAAAAT-GTAATTTTTGGAAGTTTCAAGG
* * *
32700253 TCAAAAATGGAA-TTTTAGAAG-TTCAGGGG
1 TCAAAAATGTAATTTTTGGAAGTTTCA-AGG
32700282 T-AAAAATGTAATTTTTGGAAGTTTCAAGG
1 TCAAAAATGTAATTTTTGGAAGTTTCAAGG
* *
32700311 TCAAAAATGTAATTTTGGAGAAGTTTGAAGG
1 TCAAAAATGTAATTTTTG-GAAGTTTCAAGG
*
32700342 TC-AAAATATAATTTTTG
1 TCAAAAATGTAATTTTTG
32700359 AACGGTTTAG
Statistics
Matches: 110, Mismatches: 16, Indels: 18
0.76 0.11 0.12
Matches are distributed among these distances:
28 18 0.16
29 36 0.33
30 38 0.35
31 18 0.16
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34
Consensus pattern (30 bp):
TCAAAAATGTAATTTTTGGAAGTTTCAAGG
Found at i:32700358 original size:31 final size:31
Alignment explanation
Indices: 32700194--32700358 Score: 113
Period size: 29 Copynumber: 5.6 Consensus size: 31
32700184 AAAATCGGGA
*
32700194 TCAAAAATAG-AATTTTT-GGAAG-TCCGAAGG
1 TCAAAAAT-GTAATTTTTGGGAAGTTTC-AAGG
* **
32700224 T--AAAATGGTAATTTTT-GCAAGTTTCGGGG
1 TCAAAAAT-GTAATTTTTGGGAAGTTTCAAGG
* * *
32700253 TCAAAAATGGAA-TTTT-AGAAG-TTCAGGGG
1 TCAAAAATGTAATTTTTGGGAAGTTTCA-AGG
32700282 T-AAAAATGTAATTTTT-GGAAGTTTCAAGG
1 TCAAAAATGTAATTTTTGGGAAGTTTCAAGG
*
32700311 TCAAAAATGTAA-TTTTGGAGAAGTTTGAAGG
1 TCAAAAATGTAATTTTTGG-GAAGTTTCAAGG
*
32700342 TC-AAAATATAATTTTTG
1 TCAAAAATGTAATTTTTG
32700359 AACGGTTTAG
Statistics
Matches: 110, Mismatches: 14, Indels: 21
0.76 0.10 0.14
Matches are distributed among these distances:
28 18 0.16
29 40 0.36
30 29 0.26
31 23 0.21
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34
Consensus pattern (31 bp):
TCAAAAATGTAATTTTTGGGAAGTTTCAAGG
Found at i:32701432 original size:20 final size:20
Alignment explanation
Indices: 32701407--32701452 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
32701397 CTTTTTCCTT
32701407 TTTATTAAAAATTAATATTA
1 TTTATTAAAAATTAATATTA
* * *
32701427 TTTATTAATATTTATTATTA
1 TTTATTAAAAATTAATATTA
32701447 -TTATTA
1 TTTATTA
32701453 CCGTTTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTATTAAAAATTAATATTA
Found at i:32702203 original size:14 final size:14
Alignment explanation
Indices: 32702184--32702223 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
32702174 TTTTAATATT
32702184 AATTTAAATTTAAA
1 AATTTAAATTTAAA
*
32702198 AATTTAAATTTAAT
1 AATTTAAATTTAAA
32702212 AA--TAAATTTAAA
1 AATTTAAATTTAAA
32702224 TCTATTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 9 0.38
14 15 0.62
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AATTTAAATTTAAA
Found at i:32703005 original size:153 final size:152
Alignment explanation
Indices: 32702719--32703219 Score: 594
Period size: 164 Copynumber: 3.2 Consensus size: 152
32702709 CTTCGACTTG
* * * * *
32702719 CTTCTTAGTATCTCATCAGGAAGCTGGGGGTTCGAAGATTTGCTCATATCGAACGTGGGTTTGAT
1 CTTCTCAGTATCTCATCAAGAAGCT-GGGGTTCGAAGATTTGCTCATATCG-A---GCG-TCGAG
* * * * *
32702784 TTGGTC-TTCTTCTCCGTATCTCATCAGGAAGATGACTGCATCATTTGTTTTAA-TCTGCTTCTC
60 TTGG-CATACTTCTCTGTATCTCATCAGGAAGATGAC-GCCTCACTTGTTTCAATTC-GCTTCT-
32702847 T-GTATCTCATCAGGAAGATGAATTTGTTCCA
121 TAGTATCTCATCAGGAAGATGAATTTGTTCCA
32702878 CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCGAGTTGGCA
1 CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCGAGTTGGCA
32702943 TACTTCTCTGTATCTCATCAGGAAGATGATCGCCTCACTTGTTTCAATTCGCTTCTTAGTATCTC
66 TACTTCTCTGTATCTCATCAGGAAGATGA-CGCCTCACTTGTTTCAATTCGCTTCTTAGTATCTC
* * *
32703008 ATCAGGAAGCTAACCATTTTATTGCTTTGACCTG
130 ATCAGGAAGATGA--A---T-TTG--TT--CC-A
* * *
32703042 CTTCTCAGTATCTCATCAAGAAGCTAGGGTTCAAAGATTTGCTCGTATCGAGCGTCGAGTTGGCA
1 CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCGAGTTGGCA
*
32703107 TACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCAGTATCTC
66 TACTTCTCTGTATCTCATCAGGAAGATGA-CGCCTCACTTGTTTCAATTCGCTTCTTAGTATCTC
* *
32703172 ATCAGGAAGACGAATTTGGTCCA
130 ATCAGGAAGATGAATTTGTTCCA
*
32703195 CTTCTCAGTATCTCATCAGGAAGCT
1 CTTCTCAGTATCTCATCAAGAAGCT
32703220 AACCATTTTA
Statistics
Matches: 303, Mismatches: 24, Indels: 36
0.83 0.07 0.10
Matches are distributed among these distances:
152 2 0.01
153 95 0.31
154 7 0.02
155 1 0.00
156 1 0.00
157 1 0.00
158 29 0.10
159 27 0.09
161 2 0.01
162 1 0.00
163 2 0.01
164 135 0.45
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (152 bp):
CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTCGAGTTGGCA
TACTTCTCTGTATCTCATCAGGAAGATGACGCCTCACTTGTTTCAATTCGCTTCTTAGTATCTCA
TCAGGAAGATGAATTTGTTCCA
Found at i:32715540 original size:29 final size:30
Alignment explanation
Indices: 32715509--32715766 Score: 129
Period size: 29 Copynumber: 8.8 Consensus size: 30
32715499 GTCCGGAGAT
32715509 AAAATGGTAATTTTTGCAAGTTTCGA-GGTAA
1 AAAATGGTAATTTTTG-AAGTTTCGAGGGT-A
32715540 AAAATGG-AATTTTTAGAAG-TTCGAGGGTA
1 AAAATGGTAATTTTT-GAAGTTTCGAGGGTA
* **
32715569 AAAAT-GTAATTTTTGAAAGTTT-TAGTATCA
1 AAAATGGTAATTTTTG-AAGTTTCGAGGGT-A
* * * * *
32715599 AAAAT-GAAAATTTGGAA-TTTTGGGGGTA
1 AAAATGGTAATTTTTGAAGTTTCGAGGGTA
* *
32715627 AAAACT--TAGTTTTTGGAAGTTTTG-GGGTCA
1 AAAA-TGGTAATTTTT-GAAGTTTCGAGGGT-A
* *
32715657 AAAATGG-AATTGTTAGAAG-TTCGAGTGTA
1 AAAATGGTAATT-TTTGAAGTTTCGAGGGTA
** *
32715686 AAAAT-GTAATTTTCAAAAGTTTC-AAGGTCA
1 AAAATGGTAATTTT-TGAAGTTTCGAGGGT-A
32715716 AAAATGG-AATTTTTGGAAG-TTCG-GGGTA
1 AAAATGGTAATTTTT-GAAGTTTCGAGGGTA
*
32715744 AGAAT-GTAATTTTTGAAAGTTTC
1 AAAATGGTAATTTTTG-AAGTTTC
32715767 AAAGTCAAAA
Statistics
Matches: 177, Mismatches: 25, Indels: 52
0.70 0.10 0.20
Matches are distributed among these distances:
27 2 0.01
28 32 0.18
29 66 0.37
30 66 0.37
31 11 0.06
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (30 bp):
AAAATGGTAATTTTTGAAGTTTCGAGGGTA
Found at i:32715571 original size:59 final size:58
Alignment explanation
Indices: 32715441--32715795 Score: 265
Period size: 59 Copynumber: 6.0 Consensus size: 58
32715431 ATTTTATACA
* ** * * *
32715441 TTCGAGGGTAAAACGATAATTTTTAGAAA-AATC-AGGATCAAAAACGGAATTTTTGGTAG
1 TTCGAGGGTAAAATG-TAATTTTT-GAAAGTTTCAAGG-TCAAAAATGGAATTTTTAGAAG
* * * * *
32715500 TCCG-GAGATAAAATGGTAATTTTTGCAAGTTTCGAGGTAAAAAATGGAATTTTTAGAAG
1 TTCGAG-GGTAAAAT-GTAATTTTTGAAAGTTTCAAGGTCAAAAATGGAATTTTTAGAAG
* * ** * *
32715559 TTCGAGGGTAAAAATGTAATTTTTGAAAGTTT-TAGTATCAAAAAT-GAAAATTTGGAAT
1 TTCGAGGGT-AAAATGTAATTTTTGAAAGTTTCAAG-GTCAAAAATGGAATTTTTAGAAG
* * * * *** *
32715617 TTTGGGGGTAAAAACT-TAGTTTTTGGAAGTTTTGGGGTCAAAAATGGAATTGTTAGAAG
1 TTCGAGGGT-AAAA-TGTAATTTTTGAAAGTTTCAAGGTCAAAAATGGAATTTTTAGAAG
* ** *
32715676 TTCGAGTGTAAAAATGTAATTTTCAAAAGTTTCAAGGTCAAAAATGGAATTTTTGGAAG
1 TTCGAGGGT-AAAATGTAATTTTTGAAAGTTTCAAGGTCAAAAATGGAATTTTTAGAAG
* * *
32715735 TTCG-GGGTAAGAATGTAATTTTTGAAAGTTTCAAAGTCAAAAATGTAATTTTGGAGAAG
1 TTCGAGGGTAA-AATGTAATTTTTGAAAGTTTCAAGGTCAAAAATGGAATTTT-TAGAAG
32715794 TT
1 TT
32715796 TAGAGGTCAA
Statistics
Matches: 232, Mismatches: 51, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
57 2 0.01
58 90 0.39
59 130 0.56
60 10 0.04
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34
Consensus pattern (58 bp):
TTCGAGGGTAAAATGTAATTTTTGAAAGTTTCAAGGTCAAAAATGGAATTTTTAGAAG
Found at i:32715742 original size:117 final size:117
Alignment explanation
Indices: 32715477--32715784 Score: 314
Period size: 117 Copynumber: 2.6 Consensus size: 117
32715467 AAAAATCAGG
* * * * **
32715477 ATCAAAAACGGAATTTTTGGTAGTCCGGAGATAAAATGGTAATTTTTGCAAGTTTCGAGGTAAAA
1 ATCAAAAATGGAATTTTTGGAAGTTCGG-GGTAAAAACGTAATTTTTGCAAGTTTCGAGGTAAAA
* ** *
32715542 AATGGAATTTTTAGAAGTTCGAGGGTAAAAATGTAATTTTTGAAAGTTTTAGT
65 AATGGAATTGTTAGAAGTTCGAGGGTAAAAATGTAATTTTCAAAAGTTTAAGT
** * * * * * * * *
32715595 ATCAAAAAT-GAAAATTTGGAATTTTGGGGGTAAAAACTTAGTTTTTGGAAGTTTTGGGGTCAAA
1 ATCAAAAATGGAATTTTTGGAA-GTTCGGGGTAAAAACGTAATTTTTGCAAGTTTCGAGGTAAAA
*
32715659 AATGGAATTGTTAGAAGTTCGAGTGTAAAAATGTAATTTTCAAAAGTTTCAAG-
65 AATGGAATTGTTAGAAGTTCGAGGGTAAAAATGTAATTTTCAAAAGTTT-AAGT
* * * * * * *
32715712 GTCAAAAATGGAATTTTTGGAAGTTCGGGGTAAGAATGTAATTTTTGAAAGTTTCAAAGTCAAAA
1 ATCAAAAATGGAATTTTTGGAAGTTCGGGGTAAAAACGTAATTTTTGCAAGTTTCGAGGTAAAAA
*
32715777 ATGTAATT
66 ATGGAATT
32715785 TTGGAGAAGT
Statistics
Matches: 151, Mismatches: 36, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
117 128 0.85
118 23 0.15
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34
Consensus pattern (117 bp):
ATCAAAAATGGAATTTTTGGAAGTTCGGGGTAAAAACGTAATTTTTGCAAGTTTCGAGGTAAAAA
ATGGAATTGTTAGAAGTTCGAGGGTAAAAATGTAATTTTCAAAAGTTTAAGT
Found at i:32715774 original size:58 final size:58
Alignment explanation
Indices: 32715478--32715795 Score: 284
Period size: 59 Copynumber: 5.4 Consensus size: 58
32715468 AAAATCAGGA
* * * * * *
32715478 TCAAAAACGGAATTTTTGGTAGTCCGGAG-ATAAAATGGTAATTTTTGCAAGTTTCGAGG
1 TCAAAAATGGAATTTTTGGAAGTTCGGGGTA-AAAAT-GTAATTTTTGAAAGTTTCAAGG
* * * *
32715537 TAAAAAATGGAATTTTTAGAAGTTCGAGGGTAAAAATGTAATTTTTGAAAGTTT-TAGTA
1 TCAAAAATGGAATTTTTGGAAGTTCG-GGGTAAAAATGTAATTTTTGAAAGTTTCAAG-G
** * * * * ***
32715596 TCAAAAAT-GAAAATTTGGAATTTTGGGGGTAAAAACT-TAGTTTTTGGAAGTTTTGGGG
1 TCAAAAATGGAATTTTTGGAA-GTTCGGGGTAAAAA-TGTAATTTTTGAAAGTTTCAAGG
* * * **
32715654 TCAAAAATGGAATTGTTAGAAGTTCGAGTGTAAAAATGTAATTTTCAAAAGTTTCAAGG
1 TCAAAAATGGAATTTTTGGAAGTTCG-GGGTAAAAATGTAATTTTTGAAAGTTTCAAGG
* *
32715713 TCAAAAATGGAATTTTTGGAAGTTCGGGGTAAGAATGTAATTTTTGAAAGTTTCAAAG
1 TCAAAAATGGAATTTTTGGAAGTTCGGGGTAAAAATGTAATTTTTGAAAGTTTCAAGG
* *
32715771 TCAAAAATGTAATTTTGGAGAAGTT
1 TCAAAAATGGAATTTTTG-GAAGTT
32715796 TAGAGGTCAA
Statistics
Matches: 206, Mismatches: 43, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
58 89 0.43
59 109 0.53
60 7 0.03
61 1 0.00
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.35
Consensus pattern (58 bp):
TCAAAAATGGAATTTTTGGAAGTTCGGGGTAAAAATGTAATTTTTGAAAGTTTCAAGG
Found at i:32715808 original size:30 final size:31
Alignment explanation
Indices: 32715652--32715820 Score: 117
Period size: 30 Copynumber: 5.7 Consensus size: 31
32715642 GAAGTTTTGG
* *
32715652 GGTCAAAAATGGAATTGTT--AGAAG-TTCGA
1 GGTCAAAAATGTAATT-TTGGAGAAGTTTCAA
* *
32715681 GTGT-AAAAATGTAATTTT-CAAAAGTTTCAA
1 G-GTCAAAAATGTAATTTTGGAGAAGTTTCAA
* * **
32715711 GGTCAAAAATGGAATTTTTG-GAAG-TTCGG
1 GGTCAAAAATGTAATTTTGGAGAAGTTTCAA
* *
32715740 GGT-AAGAATGTAATTTTTGA-AAGTTTCAA
1 GGTCAAAAATGTAATTTTGGAGAAGTTTCAA
*
32715769 AGTCAAAAATGTAATTTTGGAGAAGTTT-AGA
1 GGTCAAAAATGTAATTTTGGAGAAGTTTCA-A
*
32715800 GGTC-AAAATATAATTTCTGGA
1 GGTCAAAAATGTAATTT-TGGA
32715821 TAGCTTAGGG
Statistics
Matches: 112, Mismatches: 17, Indels: 20
0.75 0.11 0.13
Matches are distributed among these distances:
28 19 0.17
29 29 0.26
30 50 0.45
31 14 0.12
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.33
Consensus pattern (31 bp):
GGTCAAAAATGTAATTTTGGAGAAGTTTCAA
Found at i:32716881 original size:20 final size:20
Alignment explanation
Indices: 32716856--32716901 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
32716846 CTTTTTCCTT
32716856 TTTATTAAAAATTAATATTA
1 TTTATTAAAAATTAATATTA
* * *
32716876 TTTATTAATATTTATTATTA
1 TTTATTAAAAATTAATATTA
32716896 -TTATTA
1 TTTATTA
32716902 CCGTTTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTATTAAAAATTAATATTA
Found at i:32717645 original size:6 final size:6
Alignment explanation
Indices: 32717636--32717710 Score: 66
Period size: 6 Copynumber: 12.5 Consensus size: 6
32717626 TTTTAATATT
* * *
32717636 AATTTA AATTTT AA-TTA AATTTA AATTGAA AATTTTA AATTTA AA-ATA
1 AATTTA AATTTA AATTTA AATTTA AATT-TA AA-TTTA AATTTA AATTTA
*
32717684 AATTTA AATTTA ACA-ATA AATTTA AAT
1 AATTTA AATTTA A-ATTTA AATTTA AAT
32717711 CTATTTAAAC
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
5 9 0.16
6 37 0.67
7 7 0.13
8 2 0.04
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (6 bp):
AATTTA
Found at i:32717669 original size:18 final size:17
Alignment explanation
Indices: 32717636--32717710 Score: 93
Period size: 17 Copynumber: 4.5 Consensus size: 17
32717626 TTTTAATATT
* *
32717636 AATTTAAATTTTAATTA
1 AATTTAAATTTAAAATA
*
32717653 AATTTAAATTGAAAAT-
1 AATTTAAATTTAAAATA
32717669 --TTTAAATTTAAAATA
1 AATTTAAATTTAAAATA
32717684 AATTTAAATTTAACAATA
1 AATTTAAATTTAA-AATA
32717702 AATTTAAAT
1 AATTTAAAT
32717711 CTATTTAAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
14 13 0.26
17 24 0.48
18 13 0.26
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:32717685 original size:25 final size:24
Alignment explanation
Indices: 32717641--32717687 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
32717631 ATATTAATTT
*
32717641 AAATTTTAATTAAATTTAAATTGA
1 AAATTTTAATTAAATATAAATTGA
32717665 AAATTTTAAATTTAAA-ATAAATT
1 AAATTTT-AA-TTAAATATAAATT
32717688 TAAATTTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 7 0.35
25 8 0.40
26 5 0.25
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
AAATTTTAATTAAATATAAATTGA
Found at i:32718605 original size:19 final size:21
Alignment explanation
Indices: 32718576--32718614 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
32718566 AGGGGAAAAT
32718576 GGGAGAAAAT-AAAAGTTTTA
1 GGGAGAAAATAAAAAGTTTTA
32718596 GGGA-AAAATAAAAAGTTTT
1 GGGAGAAAATAAAAAGTTTT
32718615 GAAGGTGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.51, C:0.00, G:0.23, T:0.26
Consensus pattern (21 bp):
GGGAGAAAATAAAAAGTTTTA
Found at i:32719837 original size:2 final size:2
Alignment explanation
Indices: 32719830--32719858 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
32719820 GAGACGTCCT
32719830 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
32719859 TTATCTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:32720563 original size:23 final size:23
Alignment explanation
Indices: 32720434--32720634 Score: 113
Period size: 23 Copynumber: 8.9 Consensus size: 23
32720424 GTTAAATTTT
** *
32720434 GAGAATCTTTGCTGTTTATTGCA
1 GAGAATCTTTATTGTTCATTGCA
* * *
32720457 GGGAAT-TTTCACTGTTTATTGCA
1 GAGAATCTTT-ATTGTTCATTGCA
* * ***
32720480 GGGAATTTTTATTGTTCATTATG
1 GAGAATCTTTATTGTTCATTGCA
* *
32720503 GAGAATCTTCACTG---ATTGCA
1 GAGAATCTTTATTGTTCATTGCA
* * * *
32720523 AAAAATCTTCACTGTTCATTGCA
1 GAGAATCTTTATTGTTCATTGCA
* * *
32720546 GAGAATATTTACTATTCATTGCA
1 GAGAATCTTTATTGTTCATTGCA
* * *
32720569 AAGAATCTTCATTGTTCATTGTA
1 GAGAATCTTTATTGTTCATTGCA
**
32720592 GAGAATCTTTATTGTTCATTATA
1 GAGAATCTTTATTGTTCATTGCA
* * *
32720615 GAGATTCTTCACTGTTCATT
1 GAGAATCTTTATTGTTCATT
32720635 TTTTTCTCTT
Statistics
Matches: 140, Mismatches: 33, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
20 15 0.11
22 3 0.02
23 119 0.85
24 3 0.02
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.42
Consensus pattern (23 bp):
GAGAATCTTTATTGTTCATTGCA
Found at i:32720577 original size:46 final size:46
Alignment explanation
Indices: 32720517--32720634 Score: 146
Period size: 46 Copynumber: 2.6 Consensus size: 46
32720507 ATCTTCACTG
*
32720517 ATTGCAAAAAATCTTCACTGTTCATTGCAGAGAATATTTACTATTC
1 ATTGCAAAGAATCTTCACTGTTCATTGCAGAGAATATTTACTATTC
* * * * *
32720563 ATTGCAAAGAATCTTCATTGTTCATTGTAGAGAATCTTTATTGTTC
1 ATTGCAAAGAATCTTCACTGTTCATTGCAGAGAATATTTACTATTC
** * *
32720609 ATTATAGAGATTCTTCACTGTTCATT
1 ATTGCAAAGAATCTTCACTGTTCATT
32720635 TTTTTCTCTT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 61 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.42
Consensus pattern (46 bp):
ATTGCAAAGAATCTTCACTGTTCATTGCAGAGAATATTTACTATTC
Found at i:32723571 original size:21 final size:21
Alignment explanation
Indices: 32723530--32723583 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
32723520 GGAGTTTTTG
**
32723530 GTATCGGTAGTTACATGACTT
1 GTATCGGTAGAAACATGACTT
32723551 GTATCGGTAGAAATCAT-ACTT
1 GTATCGGTAGAAA-CATGACTT
* *
32723572 GTGTCGATAGAA
1 GTATCGGTAGAA
32723584 CTAGTACAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (21 bp):
GTATCGGTAGAAACATGACTT
Found at i:32727021 original size:20 final size:19
Alignment explanation
Indices: 32726981--32727025 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
32726971 TTTTTCTCTC
* *
32726981 TTTC-TTTCTGTTCTTTCT
1 TTTCATTTCTGTCCTTTAT
32726999 TTTCATTTCTTGTCCTTTAT
1 TTTCATTTC-TGTCCTTTAT
32727019 TTTCATT
1 TTTCATT
32727026 CTTAAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 4 0.17
19 4 0.17
20 15 0.65
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.69
Consensus pattern (19 bp):
TTTCATTTCTGTCCTTTAT
Found at i:32732314 original size:3 final size:3
Alignment explanation
Indices: 32732306--32732361 Score: 55
Period size: 3 Copynumber: 19.7 Consensus size: 3
32732296 GTTGACCCTC
* * * *
32732306 TTA TTA TTA TTG TTA TTA TTA TTA TT- TT- TTA TCA -AA TTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32732351 TTA TTA TTA TT
1 TTA TTA TTA TT
32732362 GATTCTAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
2 5 0.11
3 39 0.89
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:32751720 original size:43 final size:43
Alignment explanation
Indices: 32751643--32751786 Score: 198
Period size: 43 Copynumber: 3.3 Consensus size: 43
32751633 GTGGCAAAAT
* * *
32751643 GCCGCTATAGAACATGGTATTTAGTGACGCTTTTCCCACAAAC
1 GCCGCTATAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
* * * *
32751686 GCCACTATAGAACATGGTCTTTAACGGCGTTTTTCTCACAAAC
1 GCCGCTATAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
* *
32751729 GCCGCTATAGAACATGATCTTTAGCGGCGCTTTTCCCATAAAC
1 GCCGCTATAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
*
32751772 GCTGCTATAGAACAT
1 GCCGCTATAGAACAT
32751787 TGCAACACCC
Statistics
Matches: 87, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 87 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
GCCGCTATAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:32752986 original size:233 final size:233
Alignment explanation
Indices: 32752579--32753041 Score: 926
Period size: 233 Copynumber: 2.0 Consensus size: 233
32752569 ATGTATATAT
32752579 ATATATATATATATATTATAATTTTTAGCTTTTACTATATAGCATGCTTATATGTAACAATACAT
1 ATATATATATATATATTATAATTTTTAGCTTTTACTATATAGCATGCTTATATGTAACAATACAT
32752644 TATCTATAATTCCACTATTTACTTATGTGTTAATTTCAAAGCTGTCCACTTGATTTATAGTCACT
66 TATCTATAATTCCACTATTTACTTATGTGTTAATTTCAAAGCTGTCCACTTGATTTATAGTCACT
32752709 AAATTATTTATATCTTGAGCTAAAGAATTCAAAATTAAGATCCGCTTGATGTTTTTGAAACTAGA
131 AAATTATTTATATCTTGAGCTAAAGAATTCAAAATTAAGATCCGCTTGATGTTTTTGAAACTAGA
32752774 CTCAAATATCTTTTTACCATAAAAATTTCAAAATTAAC
196 CTCAAATATCTTTTTACCATAAAAATTTCAAAATTAAC
32752812 ATATATATATATATATTATAATTTTTAGCTTTTACTATATAGCATGCTTATATGTAACAATACAT
1 ATATATATATATATATTATAATTTTTAGCTTTTACTATATAGCATGCTTATATGTAACAATACAT
32752877 TATCTATAATTCCACTATTTACTTATGTGTTAATTTCAAAGCTGTCCACTTGATTTATAGTCACT
66 TATCTATAATTCCACTATTTACTTATGTGTTAATTTCAAAGCTGTCCACTTGATTTATAGTCACT
32752942 AAATTATTTATATCTTGAGCTAAAGAATTCAAAATTAAGATCCGCTTGATGTTTTTGAAACTAGA
131 AAATTATTTATATCTTGAGCTAAAGAATTCAAAATTAAGATCCGCTTGATGTTTTTGAAACTAGA
32753007 CTCAAATATCTTTTTACCATAAAAATTTCAAAATT
196 CTCAAATATCTTTTTACCATAAAAATTTCAAAATT
32753042 TCTACTTTAG
Statistics
Matches: 230, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
233 230 1.00
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (233 bp):
ATATATATATATATATTATAATTTTTAGCTTTTACTATATAGCATGCTTATATGTAACAATACAT
TATCTATAATTCCACTATTTACTTATGTGTTAATTTCAAAGCTGTCCACTTGATTTATAGTCACT
AAATTATTTATATCTTGAGCTAAAGAATTCAAAATTAAGATCCGCTTGATGTTTTTGAAACTAGA
CTCAAATATCTTTTTACCATAAAAATTTCAAAATTAAC
Found at i:32753552 original size:27 final size:27
Alignment explanation
Indices: 32753510--32753563 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
32753500 CTGCACTTTG
32753510 TTTCATTCAATAACACATAATTGTCAT
1 TTTCATTCAATAACACATAATTGTCAT
* *
32753537 TTTCATTCAATCACACATAATTTTCAT
1 TTTCATTCAATAACACATAATTGTCAT
32753564 ACTTTTGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.20, G:0.02, T:0.43
Consensus pattern (27 bp):
TTTCATTCAATAACACATAATTGTCAT
Found at i:32753862 original size:26 final size:26
Alignment explanation
Indices: 32753828--32753888 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
32753818 TAAGAATTTA
* * *
32753828 TTCTTTTCTTCTTCATTTTCATGCAT
1 TTCTCTTCTTCATCACTTTCATGCAT
* *
32753854 TTCTCTTCTTCATCACTTTCCTTCAT
1 TTCTCTTCTTCATCACTTTCATGCAT
*
32753880 TTTTCTTCT
1 TTCTCTTCT
32753889 CATTTTCTCC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.10, C:0.28, G:0.02, T:0.61
Consensus pattern (26 bp):
TTCTCTTCTTCATCACTTTCATGCAT
Found at i:32754169 original size:13 final size:11
Alignment explanation
Indices: 32754137--32754179 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
32754127 TCATTTTCTA
*
32754137 AATAAAATAAT
1 AATAAAATATT
32754148 AAT-AAATATTT
1 AATAAAATA-TT
32754159 AAGTAAAATATT
1 AA-TAAAATATT
32754171 AATAAAATA
1 AATAAAATA
32754180 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 5 0.18
13 5 0.18
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (11 bp):
AATAAAATATT
Found at i:32754773 original size:43 final size:43
Alignment explanation
Indices: 32754704--32754798 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
32754694 GTTACAAGCG
* ** * *
32754704 TGGTCTTTAGCGGCGTTTTTACCACAAGCGTCGCTATAAAACA
1 TGGTCTTTAACGGCACTTTTACCACAAACGCCGCTATAAAACA
*
32754747 TGGTCTTTAACGGCACTTTT-CTCACAAACGCCGCTATAGAACA
1 TGGTCTTTAACGGCACTTTTAC-CACAAACGCCGCTATAAAACA
*
32754790 TGATCTTTA
1 TGGTCTTTA
32754799 GTGGTGTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 1 0.02
43 43 0.98
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (43 bp):
TGGTCTTTAACGGCACTTTTACCACAAACGCCGCTATAAAACA
Found at i:32760347 original size:29 final size:29
Alignment explanation
Indices: 32760309--32760395 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 29
32760299 GTAGTGCTCC
* * * *
32760309 TTTCAGAGGTTTGCCACAAATGCTTTCTT
1 TTTCATAGGTTCGCCACAAAGGCTTCCTT
*
32760338 TTTCATAGG-TCGTCACAAAGGCTTCCTT
1 TTTCATAGGTTCGCCACAAAGGCTTCCTT
* *
32760366 TTTCATAGG-TCACCACAAAGACTTCCTT
1 TTTCATAGGTTCGCCACAAAGGCTTCCTT
32760394 TT
1 TT
32760396 CAAAGATTTC
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
28 42 0.84
29 8 0.16
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (29 bp):
TTTCATAGGTTCGCCACAAAGGCTTCCTT
Found at i:32760361 original size:28 final size:28
Alignment explanation
Indices: 32760322--32760395 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
32760312 CAGAGGTTTG
* * *
32760322 CCACAAATGCTTTCTTTTTCATAGGTCG
1 CCACAAAGGCTTCCTTTTTCATAGGTCA
*
32760350 TCACAAAGGCTTCCTTTTTCATAGGTCA
1 CCACAAAGGCTTCCTTTTTCATAGGTCA
*
32760378 CCACAAAGACTTCCTTTT
1 CCACAAAGGCTTCCTTTT
32760396 CAAAGATTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.36
Consensus pattern (28 bp):
CCACAAAGGCTTCCTTTTTCATAGGTCA
Found at i:32760463 original size:26 final size:26
Alignment explanation
Indices: 32760434--32760497 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
32760424 TTCAAAACTC
*
32760434 GCCACAAAGGCGACCTTTAATAGTAT
1 GCCACAAAGGCGACCTTTAAGAGTAT
*
32760460 GCCACAAAGGTGACCTTTAAGAGTAT
1 GCCACAAAGGCGACCTTTAAGAGTAT
*
32760486 GCCACACAGGCG
1 GCCACAAAGGCG
32760498 TTCCTTTTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.19
Consensus pattern (26 bp):
GCCACAAAGGCGACCTTTAAGAGTAT
Found at i:32761292 original size:19 final size:18
Alignment explanation
Indices: 32761264--32761322 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
32761254 GAATCTAATA
*
32761264 AAATTGAAAAATATATTT
1 AAATTGAAAAATGTATTT
*
32761282 AAATTGAAAAATGT-TATA
1 AAATTGAAAAATGTAT-TT
*
32761300 AAATTGAAAAAAGTATTT
1 AAATTGAAAAATGTATTT
32761318 AAATT
1 AAATT
32761323 TAAGTAATTG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
17 1 0.03
18 33 0.94
19 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (18 bp):
AAATTGAAAAATGTATTT
Found at i:32762102 original size:39 final size:39
Alignment explanation
Indices: 32762058--32762149 Score: 166
Period size: 39 Copynumber: 2.4 Consensus size: 39
32762048 AAATGTAATT
*
32762058 ATGAAATATAAATATCAAAACAAGTGGGTTTTGACATTC
1 ATGAAACATAAATATCAAAACAAGTGGGTTTTGACATTC
*
32762097 ATGAAACATAAATATCAAAACAAGTGGGTTTTGACATTT
1 ATGAAACATAAATATCAAAACAAGTGGGTTTTGACATTC
32762136 ATGAAACATAAATA
1 ATGAAACATAAATA
32762150 CCAAGTCACA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 51 1.00
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.29
Consensus pattern (39 bp):
ATGAAACATAAATATCAAAACAAGTGGGTTTTGACATTC
Found at i:32764617 original size:59 final size:59
Alignment explanation
Indices: 32764541--32764715 Score: 165
Period size: 59 Copynumber: 2.9 Consensus size: 59
32764531 TGATAAATGA
* * * *
32764541 TGAAATCGGGGTGAAAAACGGGACTTATGGATA-TCCGGGGGCAAAATGGTAATTTTCGG
1 TGAAATCGGGGTTAAAAACGGGAATTATAGA-AGTCCGAGGGCAAAATGGTAATTTTCGG
** * * * *
32764600 TGAAATCGGGGTTAAAAAATGGAATTTTAGAAGTTTCGAGGGTAAAATGGTAATTTTTGG
1 TGAAATCGGGGTTAAAAACGGGAATTATAGAAG-TCCGAGGGCAAAATGGTAATTTTCGG
* * ** * *
32764660 TGAAATCGGGGTTAAAAAC-AGAATTTTAGAAGTTTTGGGGGTAAAATGGTAATTTT
1 TGAAATCGGGGTTAAAAACGGGAATTATAGAAG-TCCGAGGGCAAAATGGTAATTTT
32764716 TGAAAGTTTT
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
58 1 0.01
59 59 0.59
60 40 0.40
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.30
Consensus pattern (59 bp):
TGAAATCGGGGTTAAAAACGGGAATTATAGAAGTCCGAGGGCAAAATGGTAATTTTCGG
Found at i:32764654 original size:29 final size:29
Alignment explanation
Indices: 32764605--32764867 Score: 87
Period size: 30 Copynumber: 8.9 Consensus size: 29
32764595 TTCGGTGAAA
32764605 TCGGGGTTAAAAAATGG-AATTTTAGAAGTT
1 TCGGGG-T-AAAAATGGTAATTTTAGAAGTT
* ** **
32764635 TCGAGGGT-AAAATGGTAATTTTTGGTGAAA
1 TCG-GGGTAAAAATGGTAATTTTAGAAG-TT
**
32764665 TCGGGGTTAAAAACAG-AATTTTAGAAGTTT
1 TCGGGG-TAAAAATGGTAATTTTAGAAG-TT
* *
32764695 TGGGGGT-AAAATGGTAATTTTTGAAAGTT
1 TCGGGGTAAAAATGGTAATTTTAG-AAGTT
* * *
32764724 TTGGGGTCAAAAT-GTAATTTTGGAAAGATT
1 TCGGGGTAAAAATGGTAATTTTAG-AAG-TT
* * *
32764754 T-GGGGTTAAAAT-ATAATTTTGGAAAAGTT
1 TCGGGGTAAAAATGGTAATTTT--AGAAGTT
** * * *
32764783 TTAGGGTCAAAAT-ATAATTTTGGAAAAGTT
1 TCGGGGTAAAAATGGTAATTTT--AGAAGTT
* * *
32764813 TTGGGGTCAAAAT-GTAATTTTGGAAAAGTT
1 TCGGGGTAAAAATGGTAATTTT--AGAAGTT
* * *
32764843 TTGGGGTCAAAAT-ATAATTTTAGAA
1 TCGGGGTAAAAATGGTAATTTTAGAA
32764868 AAATTTTGGG
Statistics
Matches: 192, Mismatches: 29, Indels: 26
0.78 0.12 0.11
Matches are distributed among these distances:
28 15 0.08
29 60 0.31
30 109 0.57
31 8 0.04
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.36
Consensus pattern (29 bp):
TCGGGGTAAAAATGGTAATTTTAGAAGTT
Found at i:32764654 original size:60 final size:59
Alignment explanation
Indices: 32764583--32764715 Score: 214
Period size: 59 Copynumber: 2.2 Consensus size: 59
32764573 ATCCGGGGGC
32764583 AAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAA-ATGGAATTTTAGAAGTTTCGAGGGT
1 AAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACA--GAATTTTAGAAGTTTCGAGGGT
* * *
32764643 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAACAGAATTTTAGAAGTTTTGGGGGT
1 AAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACAGAATTTTAGAAGTTTCGAGGGT
32764702 AAAATGGTAATTTT
1 AAAATGGTAATTTT
32764716 TGAAAGTTTT
Statistics
Matches: 69, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
59 34 0.49
60 34 0.49
61 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (59 bp):
AAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACAGAATTTTAGAAGTTTCGAGGGT
Found at i:32764716 original size:59 final size:59
Alignment explanation
Indices: 32764576--32764717 Score: 223
Period size: 60 Copynumber: 2.4 Consensus size: 59
32764566 TATGGATATC
* *
32764576 CGGGGGCAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAAATGGAATTTTAGAAGTTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAAA-GGAATTTTAGAAGTTT
*
32764636 CGAGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAACA-GAATTTTAGAAGTTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAA-AGGAATTTTAGAAGTTT
*
32764695 TGGGGGTAAAATGGTAATTTTTG
1 CGGGGGTAAAATGGTAATTTTTG
32764718 AAAGTTTTGG
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
59 36 0.47
60 39 0.51
61 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.32
Consensus pattern (59 bp):
CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAAAGGAATTTTAGAAGTTT
Found at i:32764730 original size:59 final size:57
Alignment explanation
Indices: 32764621--32764897 Score: 215
Period size: 59 Copynumber: 4.7 Consensus size: 57
32764611 TTAAAAAATG
* * * * *
32764621 GAATTTTAGAAGTTTCGAGGGTAAAATGGTAATTTTTGGTGAAA---TCGGGGTTAAAAACA
1 GAATTTTAGAAGTTTTGGGGGTAAAAT-GTAA-TTTTGG-AAAAGTTTTGGGG-TCAAAA-A
* *
32764680 GAATTTTAGAAGTTTTGGGGGTAAAATGGTAATTTTTG-AAAGTTTTGGGGTCAAAAT
1 GAATTTTAGAAGTTTTGGGGGTAAAAT-GTAATTTTGGAAAAGTTTTGGGGTCAAAAA
* * * * *
32764737 GTAATTTTGGAAAGATTTGGGGTTAAAATATAATTTTGGAAAAGTTTTAGGGTCAAAATA
1 G-AATTTTAG-AAGTTTTGGGGGTAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAA-A
* *
32764797 TAATTTTGGAAAAGTTTT-GGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATA
1 GAATTTT--AGAAGTTTTGGGGGT-AAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAA-A
* *
32764857 TAATTTTAGAAAAATTTT-GGGGTCAAAATGTAATTTCTGGA
1 GAATTTTAG--AAGTTTTGGGGGT-AAAATGTAATTT-TGGA
32764898 CAATTTAGGG
Statistics
Matches: 183, Mismatches: 22, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
56 3 0.02
57 1 0.01
58 26 0.14
59 78 0.43
60 71 0.39
61 4 0.02
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.36
Consensus pattern (57 bp):
GAATTTTAGAAGTTTTGGGGGTAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAAA
Found at i:32764903 original size:30 final size:30
Alignment explanation
Indices: 32764689--32764897 Score: 289
Period size: 30 Copynumber: 7.0 Consensus size: 30
32764679 AGAATTTTAG
*
32764689 AAGTTTTGGGGGT-AAAATGGTAATTTTTG-A
1 AAGTTTT-GGGGTCAAAAT-GTAATTTTGGAA
32764719 AAGTTTTGGGGTCAAAATGTAATTTTGG-A
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* * *
32764748 AAGATTTGGGGTTAAAATATAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* *
32764778 AAGTTTTAGGGTCAAAATATAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
32764808 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* *
32764838 AAGTTTTGGGGTCAAAATATAATTTTAGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
*
32764868 AAATTTTGGGGTCAAAATGTAATTTCTGGA
1 AAGTTTTGGGGTCAAAATGTAATTT-TGGA
32764898 CAATTTAGGG
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
29 40 0.25
30 119 0.73
31 3 0.02
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.37
Consensus pattern (30 bp):
AAGTTTTGGGGTCAAAATGTAATTTTGGAA
Found at i:32766693 original size:23 final size:23
Alignment explanation
Indices: 32766671--32766729 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
32766661 GCTTGTAAAT
*
32766671 TTGGGTCAAATTGGGTTAA-AAA
1 TTGGGTCAAATTGGGTCAAGAAA
32766693 -TGGGTGCAAA-TGGGTCAAGAGAA
1 TTGGGT-CAAATTGGGTCAAGA-AA
32766716 TTGGGTC-AATTGGG
1 TTGGGTCAAATTGGG
32766730 CCATGTATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
21 12 0.39
22 7 0.23
23 7 0.23
24 5 0.16
ACGTcount: A:0.31, C:0.07, G:0.36, T:0.27
Consensus pattern (23 bp):
TTGGGTCAAATTGGGTCAAGAAA
Found at i:32766776 original size:6 final size:6
Alignment explanation
Indices: 32766752--32766860 Score: 73
Period size: 6 Copynumber: 18.0 Consensus size: 6
32766742 ACATTGGACT
* * **
32766752 TTTAAA TTTTTAA TGTTAAA TTTAATA TTTTAA TTTTTA TTTAAA TTTAAA
1 TTTAAA -TTTAAA T-TTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA
* * * *
32766803 TTCAAA -TTAAA TTTAAATA TTTAAA TTTAAA -ATAAA TCTAAA TTGAAA
1 TTTAAA TTTAAA TTT-AA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
32766851 --TAAA TTTAAA
1 TTTAAA TTTAAA
32766861 ATCAATTTAA
Statistics
Matches: 81, Mismatches: 13, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
4 3 0.04
5 8 0.10
6 47 0.58
7 19 0.23
8 4 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:32766824 original size:25 final size:25
Alignment explanation
Indices: 32766796--32766845 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
32766786 TTTTATTTAA
* *
32766796 ATTTAAATTCAAATTAAATTTAAAT
1 ATTTAAATTCAAAATAAATCTAAAT
*
32766821 ATTTAAATTTAAAATAAATCTAAAT
1 ATTTAAATTCAAAATAAATCTAAAT
32766846 TGAAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTTAAATTCAAAATAAATCTAAAT
Found at i:32766824 original size:31 final size:31
Alignment explanation
Indices: 32766789--32766852 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
32766779 TTTTAATTTT
* *
32766789 TATTTAAATTTAAATTCAAAT-TAAATTTAAA
1 TATTTAAATTTAAAAT-AAATCTAAATTGAAA
32766820 TATTTAAATTTAAAATAAATCTAAATTGAAA
1 TATTTAAATTTAAAATAAATCTAAATTGAAA
32766851 TA
1 TA
32766853 AATTTAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (31 bp):
TATTTAAATTTAAAATAAATCTAAATTGAAA
Found at i:32766839 original size:42 final size:43
Alignment explanation
Indices: 32766767--32766860 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 43
32766757 ATTTTTAATG
* * ** *
32766767 TTAAATTT-AATATTTTAATTTTTATTTAAATTTAAATTCAAA
1 TTAAATTTAAATATTTTAAATTTAAAATAAATCTAAATTCAAA
*
32766809 TTAAATTTAAATA-TTTAAATTTAAAATAAATCTAAATTGAAA
1 TTAAATTTAAATATTTTAAATTTAAAATAAATCTAAATTCAAA
32766851 -TAAATTTAAA
1 TTAAATTTAAA
32766861 ATCAATTTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 10 0.22
42 31 0.69
43 4 0.09
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (43 bp):
TTAAATTTAAATATTTTAAATTTAAAATAAATCTAAATTCAAA
Found at i:32766862 original size:17 final size:17
Alignment explanation
Indices: 32766821--32766862 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
32766811 AAATTTAAAT
*
32766821 ATTTAAATTTAAAATAA
1 ATTTAAAATTAAAATAA
* *
32766838 ATCT-AAATTGAAATAA
1 ATTTAAAATTAAAATAA
32766854 ATTTAAAAT
1 ATTTAAAAT
32766863 CAATTTAACT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (17 bp):
ATTTAAAATTAAAATAA
Found at i:32769193 original size:30 final size:29
Alignment explanation
Indices: 32769131--32769197 Score: 89
Period size: 30 Copynumber: 2.3 Consensus size: 29
32769121 CAAAATTTTG
**
32769131 GAATTTAGTCCCTATACTTTTATTTTTAA
1 GAATTTAGTCCCTATACTTTTAGATTTAA
* *
32769160 GAATTTAGTCCCTCTACTTTTTAGATTTCA
1 GAATTTAGTCCCTATAC-TTTTAGATTTAA
32769190 GAATTTAG
1 GAATTTAG
32769198 GTCCAATTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.48
Consensus pattern (29 bp):
GAATTTAGTCCCTATACTTTTAGATTTAA
Found at i:32775714 original size:18 final size:18
Alignment explanation
Indices: 32775689--32775733 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
32775679 ATGAAATTAG
*
32775689 AATTAATTTGCATAAATT
1 AATTAATTTGAATAAATT
* * *
32775707 ATTTAATTAGAATTAATT
1 AATTAATTTGAATAAATT
32775725 AATTAATTT
1 AATTAATTT
32775734 TTAGAAAAAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (18 bp):
AATTAATTTGAATAAATT
Found at i:32776788 original size:12 final size:13
Alignment explanation
Indices: 32776765--32776794 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
32776755 TTTGGATTTG
32776765 GATTTTCATTTTC
1 GATTTTCATTTTC
32776778 -ATTTTCATTTTC
1 GATTTTCATTTTC
32776790 GATTT
1 GATTT
32776795 AAGGTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.17, C:0.13, G:0.07, T:0.63
Consensus pattern (13 bp):
GATTTTCATTTTC
Found at i:32793530 original size:36 final size:36
Alignment explanation
Indices: 32793464--32793534 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
32793454 TTTAAATAAT
* *
32793464 ATATATAATATATTATTTTAAAATATAAAAAAAATC
1 ATATATAATATATTATTATAAAAAATAAAAAAAATC
32793500 ATATATAATATA-TA-TATAAATAAATCAAAAAAAAT
1 ATATATAATATATTATTATAAA-AAAT-AAAAAAAAT
32793535 TAAAAATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 5 0.16
35 5 0.16
36 21 0.68
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (36 bp):
ATATATAATATATTATTATAAAAAATAAAAAAAATC
Found at i:32793608 original size:31 final size:32
Alignment explanation
Indices: 32793544--32793620 Score: 86
Period size: 31 Copynumber: 2.4 Consensus size: 32
32793534 TTAAAAATTT
*
32793544 AAAAATCTAAAATATATAAATATAAATTTAAAA
1 AAAAATC-AAAATATATAAATATAAATTCAAAA
*
32793577 AAAAATCAAAATAT-TATATA-AGAATTCAAAA
1 AAAAATCAAAATATATAAATATA-AATTCAAAA
*
32793608 AAAATATAAAAAT
1 AAAA-ATCAAAAT
32793621 GTATTTAAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 1 0.03
31 17 0.44
32 14 0.36
33 7 0.18
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (32 bp):
AAAAATCAAAATATATAAATATAAATTCAAAA
Found at i:32799667 original size:20 final size:19
Alignment explanation
Indices: 32799621--32799667 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
32799611 AGTGCAATAG
*
32799621 GAAGAAAAAAAAAGAGAGA
1 GAAGAAAAAAAAAAAGAGA
32799640 -AATTGAAAAAAAAAAAGAAGA
1 GAA--GAAAAAAAAAAAG-AGA
32799661 GAAGAAA
1 GAAGAAA
32799668 CGTTATGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
18 2 0.09
20 16 0.70
21 3 0.13
22 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.04
Consensus pattern (19 bp):
GAAGAAAAAAAAAAAGAGA
Found at i:32801651 original size:36 final size:36
Alignment explanation
Indices: 32801586--32801676 Score: 130
Period size: 36 Copynumber: 2.6 Consensus size: 36
32801576 TCGAGGGTCG
* *
32801586 CGATCTTAAATCAACGA-ATTTAATGATATCAGTTA
1 CGATATTAAATCAACGAGCTTTAATGATATCAGTTA
* *
32801621 CGATTTTAAATCAACGAGCTTTAATGATATCAGTTG
1 CGATATTAAATCAACGAGCTTTAATGATATCAGTTA
*
32801657 TGATATTAAATCAACGAGCT
1 CGATATTAAATCAACGAGCT
32801677 ACTTAAAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
35 16 0.32
36 34 0.68
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (36 bp):
CGATATTAAATCAACGAGCTTTAATGATATCAGTTA
Found at i:32804697 original size:3 final size:3
Alignment explanation
Indices: 32804689--32804740 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
32804679 TACATCCCAA
32804689 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32804737 AAT A
1 AAT A
32804741 GAATAGAGTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:32805888 original size:14 final size:15
Alignment explanation
Indices: 32805869--32805903 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
32805859 TGGGTTGGAC
*
32805869 TTGGTTC-AATTGGT
1 TTGGTTCAAATGGGT
32805883 TTGGTTCAAATGGGT
1 TTGGTTCAAATGGGT
32805898 TTGGTT
1 TTGGTT
32805904 AGGTTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.14, C:0.06, G:0.31, T:0.49
Consensus pattern (15 bp):
TTGGTTCAAATGGGT
Found at i:32805924 original size:26 final size:24
Alignment explanation
Indices: 32805893--32805947 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 24
32805883 TTGGTTCAAA
32805893 TGGGTTTGGTTAGGTTTAAATGAATG
1 TGGGTTT-GTT-GGTTTAAATGAATG
32805919 TGGG--T-TTGGTTTAAATGAATG
1 TGGGTTTGTTGGTTTAAATGAATG
32805940 TGGGTTTG
1 TGGGTTTG
32805948 ATTTAAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
21 18 0.69
22 2 0.08
23 1 0.04
24 1 0.04
26 4 0.15
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (24 bp):
TGGGTTTGTTGGTTTAAATGAATG
Found at i:32805929 original size:21 final size:21
Alignment explanation
Indices: 32805900--32805956 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
32805890 AAATGGGTTT
*
32805900 GGTTAGGTTTAAATGAATGTG
1 GGTTTGGTTTAAATGAATGTG
32805921 GGTTTGGTTTAAATGAATGTG
1 GGTTTGGTTTAAATGAATGTG
*
32805942 GGTTTGATTTAAATG
1 GGTTTGGTTTAAATG
32805957 GGATTTGGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (21 bp):
GGTTTGGTTTAAATGAATGTG
Found at i:32806743 original size:17 final size:17
Alignment explanation
Indices: 32806721--32806767 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
32806711 GTTTTAATTG
*
32806721 AATTTATTTTAATTTTA
1 AATTTATTTTAAATTTA
32806738 AATTTATTTTAAATTTA
1 AATTTATTTTAAATTTA
*
32806755 AATTTATCTTAAA
1 AATTTATTTTAAA
32806768 AGTTCAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTTATTTTAAATTTA
Found at i:32806956 original size:14 final size:14
Alignment explanation
Indices: 32806937--32806963 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32806927 ACCAATCAGC
32806937 TGCTGTTCGTCACT
1 TGCTGTTCGTCACT
32806951 TGCTGTTCGTCAC
1 TGCTGTTCGTCAC
32806964 CTGCACACGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.30, G:0.22, T:0.41
Consensus pattern (14 bp):
TGCTGTTCGTCACT
Found at i:32807225 original size:28 final size:30
Alignment explanation
Indices: 32807193--32807255 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 30
32807183 CATACATATA
32807193 TATATATAC-TTA-TA-TTTATTCATTTTAT
1 TATATATACATTATTAGTTTATTCA-TTTAT
32807221 TATATATACATTTATTAGTTTTATTCATTTAT
1 TATATATACA-TTATTAG-TTTATTCATTTAT
32807253 TAT
1 TAT
32807256 GTCGAAATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
28 9 0.30
30 3 0.10
31 2 0.07
32 8 0.27
33 8 0.27
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (30 bp):
TATATATACATTATTAGTTTATTCATTTAT
Found at i:32810407 original size:29 final size:29
Alignment explanation
Indices: 32810375--32810569 Score: 125
Period size: 29 Copynumber: 6.7 Consensus size: 29
32810365 TGGATACCCG
* *
32810375 GGGGCAAAATGGTAATTTTCGGTGAAATC
1 GGGGTAAAATGGTAATTTTAGGTGAAATC
** *** *
32810404 GGGGTTAAAATGG-AATTTTAGAAGCTTTG
1 GGGG-TAAAATGGTAATTTTAGGTGAAATC
*
32810433 GGGGTAAAATGGTAATTTTTGGTGAAATC
1 GGGGTAAAATGGTAATTTTAGGTGAAATC
** **
32810462 GGGGTTAAAAATGG-AATTTTAGAAG-CTTC
1 GGGG-T-AAAATGGTAATTTTAGGTGAAATC
*
32810491 GGGGGTAAAATGGTAATTTTTGGTGAAATC
1 -GGGGTAAAATGGTAATTTTAGGTGAAATC
*
32810521 GGGGTTAAAAATGG-AATTTT--GT-AAGTTTC
1 GGGG-T-AAAATGGTAATTTTAGGTGAA--ATC
32810550 GGGGGTAAAATGGTAATTTT
1 -GGGGTAAAATGGTAATTTT
32810570 TGAAAATTTT
Statistics
Matches: 127, Mismatches: 26, Indels: 26
0.71 0.15 0.15
Matches are distributed among these distances:
27 2 0.02
28 24 0.19
29 54 0.43
30 33 0.26
31 14 0.11
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (29 bp):
GGGGTAAAATGGTAATTTTAGGTGAAATC
Found at i:32810502 original size:59 final size:59
Alignment explanation
Indices: 32810373--32810571 Score: 339
Period size: 59 Copynumber: 3.4 Consensus size: 59
32810363 TATGGATACC
* *
32810373 CGGGGGCAAAATGGTAATTTTCGGTGAAATCGGGGTT-AAAATGGAATTTTAGAAGCTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
*
32810431 TGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
*
32810490 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTT-GTAAGTTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAG-AAGCTT
32810549 CGGGGGTAAAATGGTAATTTTTG
1 CGGGGGTAAAATGGTAATTTTTG
32810572 AAAATTTTGG
Statistics
Matches: 134, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
58 35 0.26
59 99 0.74
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (59 bp):
CGGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGCTT
Found at i:32810571 original size:30 final size:30
Alignment explanation
Indices: 32810373--32810657 Score: 144
Period size: 30 Copynumber: 9.7 Consensus size: 30
32810363 TATGGATACC
*
32810373 CGGGGGCAAAATGGTAATTTTCGGTGAAA---T
1 CGGGGGTAAAATGGTAATTTT---TGAAAGTTT
* *
32810403 CGGGGTTAAAATGG-AATTTTAG-AAGCTTT
1 CGGGGGTAAAATGGTAATTTTTGAAAG-TTT
32810432 -GGGGGTAAAATGGTAATTTTTGGTGAAA---T
1 CGGGGGTAAAATGGTAA-TTTT--TGAAAGTTT
* * *
32810461 CGGGGTTAAAAATGG-AATTTTAG-AAGCTT
1 CGGGGGT-AAAATGGTAATTTTTGAAAGTTT
32810490 CGGGGGTAAAATGGTAATTTTTGGTGAAA---T
1 CGGGGGTAAAATGGTAA-TTTT--TGAAAGTTT
* *
32810520 CGGGGTTAAAAATGG-AA-TTTTGTAAGTTT
1 CGGGGGT-AAAATGGTAATTTTTGAAAGTTT
*
32810549 CGGGGGTAAAATGGTAATTTTTGAAAATTT
1 CGGGGGTAAAATGGTAATTTTTGAAAGTTT
* * *
32810579 -TGGGGTCAAAAT-ATAATTTTGGAAAAGTTT
1 CGGGGGT-AAAATGGTAATTTTTG-AAAGTTT
* * *
32810609 -TGGGGTCAAAAT-ATAATTTTGGAAAAGTTT
1 CGGGGGT-AAAATGGTAATTTTTG-AAAGTTT
32810639 CGGGGGTAAAAT-GTAATTT
1 CGGGGGTAAAATGGTAATTT
32810658 CTGGACAATT
Statistics
Matches: 207, Mismatches: 20, Indels: 56
0.73 0.07 0.20
Matches are distributed among these distances:
25 2 0.01
26 7 0.03
27 1 0.00
28 29 0.14
29 45 0.22
30 98 0.47
31 19 0.09
32 2 0.01
33 4 0.02
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.34
Consensus pattern (30 bp):
CGGGGGTAAAATGGTAATTTTTGAAAGTTT
Found at i:32810940 original size:162 final size:162
Alignment explanation
Indices: 32810755--32811079 Score: 499
Period size: 162 Copynumber: 2.0 Consensus size: 162
32810745 ATTTGAAAAT
* *
32810755 CTTGAAAAATTTTTGGACCAATTTTGTAATT-AAATAAAAGTTGATTTAAGGATTAAATTAAAAC
1 CTTGAAAAATTATTGGACCAATTTCGTAATTAAAAT-AAAGTTGATTTAAGGATTAAATTAAAAC
* *
32810819 AAATTAAAAATAAAAAGGACTAAATGAAGAAATAATCCAAAAAATGACACGTGGCAACCTCTGGT
65 AAATAAAAAATAAAAAGGACTAAATGAAGAAATAATCCAAAAAATGACACGTGGCAACCTCTGGC
* **
32810884 GCAGTCAAACAGTCAAAGGACTAGTTTATAAAC
130 ACAGTCAAACAGTCAAAGGACTAAATTATAAAC
* **
32810917 CTTGAAAAATTATTGGGCCAATTTCGTAATTAAAATAAAGTTGATTTGGGGATTAAATTAAAACA
1 CTTGAAAAATTATTGGACCAATTTCGTAATTAAAATAAAGTTGATTTAAGGATTAAATTAAAACA
* * * * *
32810982 AATAAAAAATAAAAAGGACTAAATGCATAAATAATGCAATACATGACACGTGGCAACCTCTGGCA
66 AATAAAAAATAAAAAGGACTAAATGAAGAAATAATCCAAAAAATGACACGTGGCAACCTCTGGCA
32811047 CAGTCAAACAGTCAAAGGACTAAATTATAAAC
131 CAGTCAAACAGTCAAAGGACTAAATTATAAAC
32811079 C
1 C
32811080 AATTAAAATT
Statistics
Matches: 147, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
162 143 0.97
163 4 0.03
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (162 bp):
CTTGAAAAATTATTGGACCAATTTCGTAATTAAAATAAAGTTGATTTAAGGATTAAATTAAAACA
AATAAAAAATAAAAAGGACTAAATGAAGAAATAATCCAAAAAATGACACGTGGCAACCTCTGGCA
CAGTCAAACAGTCAAAGGACTAAATTATAAAC
Found at i:32811148 original size:162 final size:161
Alignment explanation
Indices: 32810801--32811151 Score: 420
Period size: 162 Copynumber: 2.2 Consensus size: 161
32810791 AAAGTTGATT
*
32810801 TAAGGATTAAATTAAAACAAATTAAAAATAAAAAGGACTAAATGAAGAAATAATCCAAAAAATGA
1 TAAGGATTAAATTAAAACAAATAAAAAATAAAAAGGACTAAATGAAGAAATAATCCAAAAAATGA
** ** **
32810866 CACGTGGCAACCTCTGGTGCAGTCAAACAGTCAAAGGACTAGTTTATAAACCTTGAAAAATTATT
66 CACGTGGCAACCTCTGGCACAGTCAAACAGTCAAAGGACTAAATTATAAACCTT-AAAAATTACA
* * * * **
32810931 GGGCCAATTTCGTAATTAAAATAAAGTTGATT
130 GGGCAAATTTCGCAAATAAAATAAAGATGACA
** * * * * *
32810963 TGGGGATTAAATTAAAACAAATAAAAAATAAAAAGGACTAAATGCATAAATAATGCAATACATGA
1 TAAGGATTAAATTAAAACAAATAAAAAATAAAAAGGACTAAATGAAGAAATAATCCAAAAAATGA
32811028 CACGTGGCAACCTCTGGCACAGTCAAACAGTCAAAGGACTAAATTATAAACCAATT-AAAATTAC
66 CACGTGGCAACCTCTGGCACAGTCAAACAGTCAAAGGACTAAATTATAAACC--TTAAAAATTAC
*
32811092 AGGGCAAATTT-GCAAATAATTAA-AAAGATGCCA
129 AGGGCAAATTTCGCAAATAA--AATAAAGATGACA
* * *
32811125 TAAGGACTAAATTGAAGCAAATAAAAA
1 TAAGGATTAAATTAAAACAAATAAAAA
32811152 TGTGGAAGGA
Statistics
Matches: 159, Mismatches: 26, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
161 6 0.04
162 149 0.94
163 2 0.01
164 2 0.01
ACGTcount: A:0.49, C:0.13, G:0.15, T:0.23
Consensus pattern (161 bp):
TAAGGATTAAATTAAAACAAATAAAAAATAAAAAGGACTAAATGAAGAAATAATCCAAAAAATGA
CACGTGGCAACCTCTGGCACAGTCAAACAGTCAAAGGACTAAATTATAAACCTTAAAAATTACAG
GGCAAATTTCGCAAATAAAATAAAGATGACA
Found at i:32812623 original size:6 final size:6
Alignment explanation
Indices: 32812614--32812691 Score: 60
Period size: 6 Copynumber: 13.8 Consensus size: 6
32812604 TAATATTATT
* *
32812614 TTTAAA TTT-AA -TTAAA TCTAAA TTTAAGA --TAAA TTTAAA CTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA
* * *
32812659 -ATAAA TTTAAA TTTAAA -TAAAA TTTAAA ATTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAA
32812692 TCTTAAAATA
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
4 3 0.05
5 15 0.26
6 38 0.67
7 1 0.02
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (6 bp):
TTTAAA
Found at i:32812652 original size:17 final size:16
Alignment explanation
Indices: 32812614--32812691 Score: 93
Period size: 17 Copynumber: 4.7 Consensus size: 16
32812604 TAATATTATT
*
32812614 TTTAAATTTAATTAAA
1 TTTAAATTTAAATAAA
*
32812630 TCTAAATTTAAGATAAA
1 TTTAAATTTAA-ATAAA
*
32812647 TTTAAACTTAAAATAAA
1 TTTAAA-TTTAAATAAA
32812664 TTTAAATTTAAATAAAA
1 TTTAAATTTAAAT-AAA
*
32812681 TTTAAAATTAA
1 TTTAAATTTAA
32812692 TCTTAAAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
16 16 0.30
17 33 0.62
18 4 0.08
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (16 bp):
TTTAAATTTAAATAAA
Found at i:32812703 original size:28 final size:28
Alignment explanation
Indices: 32812654--32812709 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
32812644 AAATTTAAAC
* *
32812654 TTAAAATAAATTTAAATTTAAATAAAAT
1 TTAAAATAAATTTAAATATAAACAAAAT
*
32812682 TTAAAATTAATCTTAAA-ATAAACAAAAT
1 TTAAAATAAAT-TTAAATATAAACAAAAT
32812710 CCAAGGTCCG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 19 0.79
29 5 0.21
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (28 bp):
TTAAAATAAATTTAAATATAAACAAAAT
Found at i:32814597 original size:6 final size:6
Alignment explanation
Indices: 32814586--32814655 Score: 63
Period size: 6 Copynumber: 12.0 Consensus size: 6
32814576 TTAAAATAAT
** * * *
32814586 TTTAAA TTTAAA CATAAA TTTAAA TTTAAA TTTTAA --CAAA TTCAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
**
32814632 TTTAAA AATAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA
32814656 ATAAATTCAA
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
4 2 0.04
6 48 0.96
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (6 bp):
TTTAAA
Found at i:32814668 original size:18 final size:18
Alignment explanation
Indices: 32814574--32814666 Score: 82
Period size: 18 Copynumber: 5.1 Consensus size: 18
32814564 TGTTTTCATT
* *
32814574 ATTT-AAAATAATTTTAA
1 ATTTAAAAATAAATTCAA
* *
32814591 ATTTAAACATAAATTTAA
1 ATTTAAAAATAAATTCAA
*
32814609 ATTTAAATTTTAACAAATTCAA
1 ATTTAAA----AATAAATTCAA
*
32814631 ATTTAAAAATAAATTTAA
1 ATTTAAAAATAAATTCAA
32814649 ATTT-AAAATAAATTCAA
1 ATTTAAAAATAAATTCAA
32814666 A
1 A
32814667 ATGGGTTTAA
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
17 17 0.27
18 31 0.49
22 15 0.24
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTTAAAAATAAATTCAA
Found at i:32815847 original size:120 final size:121
Alignment explanation
Indices: 32815694--32815935 Score: 407
Period size: 120 Copynumber: 2.0 Consensus size: 121
32815684 AAAAAAAGCA
* * *
32815694 CACGTGGTTTCCCTGCTTATCTCATATCTTTTAAATCTTTTTAATTTTCTTTTTTATACCCTTAA
1 CACGGGGTTTCCCTGCTTAGCTCATATCTTTTAAATCTTTTTAATTTCCTTTTTTATACCCTTAA
*
32815759 TAACATATATTTTACCAATTTACCTTTAAAATTTTTTAAATTTAAATTTGCATAGT
66 TAACATATATTTTACCAATTTACCTTTAAAATCTTTTAAATTTAAATTTGCATAGT
*
32815815 CACGGGGTTT-CCTTCTTAGCTCATAT-TATTTAAATCTTTTTAATTTCCTTTTTTATACCCTTA
1 CACGGGGTTTCCCTGCTTAGCTCATATCT-TTTAAATCTTTTTAATTTCCTTTTTTATACCCTTA
*
32815878 ATAATATATATTTTACCAATTTACCTTTAAAATCTTTTAAATTTAAATTTGCATAGT
65 ATAACATATATTTTACCAATTTACCTTTAAAATCTTTTAAATTTAAATTTGCATAGT
32815935 C
1 C
32815936 TACCTCCCTT
Statistics
Matches: 114, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
119 1 0.01
120 104 0.91
121 9 0.08
ACGTcount: A:0.29, C:0.17, G:0.05, T:0.50
Consensus pattern (121 bp):
CACGGGGTTTCCCTGCTTAGCTCATATCTTTTAAATCTTTTTAATTTCCTTTTTTATACCCTTAA
TAACATATATTTTACCAATTTACCTTTAAAATCTTTTAAATTTAAATTTGCATAGT
Found at i:32820056 original size:3 final size:3
Alignment explanation
Indices: 32820048--32820081 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
32820038 AAAGAGGAAA
32820048 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
32820082 GAAAAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:32822167 original size:49 final size:49
Alignment explanation
Indices: 32822115--32822420 Score: 244
Period size: 49 Copynumber: 6.3 Consensus size: 49
32822105 AGATGAGATA
* *
32822115 GGAAAGATTTAAGCCGCAACAGCGAATTTAGTACCATGAAAATATGGAA-
1 GGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCATGAAAATAT-GAAG
* * * * * * **
32822164 GGAAAGGTTGAAGTCGCAACGGCAAACCTTA-TACC-TCAAAGCATGAAG
1 GGAAAGATTTAAGCCGCAACGGCGAATC-TAGTACCATGAAAATATGAAG
* * * * * * *
32822212 GGAAATATTTAAGCCGTAATGACGAATCCAATACCATGAAGATATGAAG
1 GGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCATGAAAATATGAAG
* * * * *
32822261 GGAAAGGTTTAAGTCGCAACGGCAAATCTTA-TACC-TCAGAAACATGAAG
1 GGAAAGATTTAAGCCGCAACGGCGAATC-TAGTACCATGA-AAATATGAAG
* * * *
32822310 GGGAAGATTTAAGCCGCAACGGTGAATCTAGTACCACGAAGATATGAAG
1 GGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCATGAAAATATGAAG
** * * * *
32822359 GGAAAGATTTAAATCGCAACAGCGAATCCAGTACCATGAAGATATAAAG
1 GGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCATGAAAATATGAAG
*
32822408 GGAAAGGTTTAAG
1 GGAAAGATTTAAG
32822421 TCATAACGGC
Statistics
Matches: 195, Mismatches: 54, Indels: 16
0.74 0.20 0.06
Matches are distributed among these distances:
47 4 0.02
48 33 0.17
49 154 0.79
50 4 0.02
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.20
Consensus pattern (49 bp):
GGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCATGAAAATATGAAG
Found at i:32822354 original size:98 final size:97
Alignment explanation
Indices: 32822115--32822378 Score: 350
Period size: 97 Copynumber: 2.7 Consensus size: 97
32822105 AGATGAGATA
* * * *
32822115 GGAAAGATTTAAGCCGCAACAGCGAATTTAGTACCATGAAAATATGGAA-GGAAAGGTTGAAGTC
1 GGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCATGAAGATAT-GAAGGGAAAGGTTTAAGTC
*
32822179 GCAACGGCAAACCTTATACCTCAAAGCATGAAG
65 GCAACGGCAAACCTTATACCTCAAAACATGAAG
* * * * * *
32822212 GGAAATATTTAAGCCGTAATGACGAATCCAATACCATGAAGATATGAAGGGAAAGGTTTAAGTCG
1 GGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCATGAAGATATGAAGGGAAAGGTTTAAGTCG
*
32822277 CAACGGCAAATCTTATACCTCAGAAACATGAAG
66 CAACGGCAAACCTTATACCTCA-AAACATGAAG
* * * * *
32822310 GGGAAGATTTAAGCCGCAACGGTGAATCTAGTACCACGAAGATATGAAGGGAAAGATTTAAATCG
1 GGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCATGAAGATATGAAGGGAAAGGTTTAAGTCG
32822375 CAAC
66 CAAC
32822379 AGCGAATCCA
Statistics
Matches: 142, Mismatches: 23, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
96 3 0.02
97 72 0.51
98 67 0.47
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (97 bp):
GGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCATGAAGATATGAAGGGAAAGGTTTAAGTCG
CAACGGCAAACCTTATACCTCAAAACATGAAG
Found at i:32822429 original size:98 final size:96
Alignment explanation
Indices: 32822353--32822885 Score: 454
Period size: 98 Copynumber: 5.7 Consensus size: 96
32822343 CCACGAAGAT
** *
32822353 ATGAAGGGAAAGATTTAAATCGCAACAGCGAATCCAGTACCATGAAGATATAAAGGGAAAGGTTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAGCGAATCCAGTACCACGAAGATATAAAGGGAAAGGTTT
* * *
32822418 AAGTCATAACGGCGAACCTTGTACCT-----C
66 AAGTCACAATGGCGAACC-TATACCTCGAAGC
* * * * * *
32822445 A-GAA--G---CATTTAAGTCACAAC-GACGAATCCAGTACCGCGAAGACACAAAGGGAAAGGTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAG-CGAATCCAGTACCACGAAGATATAAAGGGAAAGGTT
* * ** *
32822503 TAAATCGCAATGGCGAATTTTATACCTCAAAAGC
65 TAAGTCACAATGGCGAA-CCTATACCTC-GAAGC
* *
32822537 ATGAAGGGAAAGATTTAAGCTGC-A-A-CGAATCCAGTACCACAAAGATATAAAGGGAAAGGTTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAGCGAATCCAGTACCACGAAGATATAAAGGGAAAGGTTT
* *
32822599 AAGTCACAATAGCGAACCTTGTACCT-----C
66 AAGTCACAATGGCGAACC-TATACCTCGAAGC
* * * * *
32822626 A-GAA--G---CATTTAAGCCACAACAGCGAATCTAGTACCGCGAAGATACAAAGGGAAAGGTTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAGCGAATCCAGTACCACGAAGATATAAAGGGAAAGGTTT
* *
32822685 AAGTCGCAATGGTGAACCTTATACCTCAGAAGC
66 AAGTCACAATGGCGAACC-TATACCTC-GAAGC
* * * *
32822718 ATGAAAGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCGCGAAGATACAAAGGGAAAGGTTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAGCGAATCCAGTACCACGAAGATATAAAGGGAAAGGTTT
* **
32822783 AAGTCACAATAGCGAATTTTATACCTCAGAAGC
66 AAGTCACAATGGCGAA-CCTATACCTC-GAAGC
* *
32822816 ATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCCAATACCACGAAGATATAAA-GGAGAAGGTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAGCGAATCCAGTACCACGAAGATATAAAGGGA-AAGGTT
32822880 TAAGTC
65 TAAGTC
32822886 GCAACAACAA
Statistics
Matches: 356, Mismatches: 52, Indels: 60
0.76 0.11 0.13
Matches are distributed among these distances:
83 9 0.03
84 1 0.00
85 2 0.01
86 119 0.33
88 3 0.01
89 3 0.01
91 3 0.01
92 5 0.01
93 6 0.02
95 54 0.15
97 4 0.01
98 147 0.41
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (96 bp):
ATGAAGGGAAAGATTTAAGCCGCAACAGCGAATCCAGTACCACGAAGATATAAAGGGAAAGGTTT
AAGTCACAATGGCGAACCTATACCTCGAAGC
Found at i:32822479 original size:86 final size:86
Alignment explanation
Indices: 32822381--32822817 Score: 365
Period size: 86 Copynumber: 4.8 Consensus size: 86
32822371 ATCGCAACAG
* * * * *
32822381 CGAATCCAGTACCATGAAGATATAAAGGGAAAGGTTTAAGTCATAACGGCGAACCTTGTACCTCA
1 CGAATCCAGTACCACGAAGATACAAAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCA
32822446 GAAGCATTTAAGTCACAACGA
66 GAAGCATTTAAGTCACAACGA
* * * * **
32822467 CGAATCCAGTACCGCGAAGACACAAAGGGAAAGGTTTAAATCGCAATGGCGAATTTTATACCTCA
1 CGAATCCAGTACCACGAAGATACAAAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCA
* ** * *
32822532 AAAGCATGAAGGGAAAGATTTA-AGCTGCAA
66 GAAGCAT-----TTAAG--TCACAAC-G--A
* * * *
32822562 CGAATCCAGTACCACAAAGATATAAAGGGAAAGGTTTAAGTCACAATAGCGAACCTTGTACCTCA
1 CGAATCCAGTACCACGAAGATACAAAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCA
*
32822627 GAAGCATTTAAGCCACAAC-A
66 GAAGCATTTAAGTCACAACGA
* * * *
32822647 GCGAATCTAGTACCGCGAAGATACAAAGGGAAAGGTTTAAGTCGCAATGGTGAACCTTATACCTC
1 -CGAATCCAGTACCACGAAGATACAAAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTC
* * *
32822712 AGAAGCATGAAAGGAAAGATTTAAGCCGCAACGG
65 AGAAGC------------ATTTAAGTCACAACGA
* * **
32822746 CGAATCCAGTACCGCGAAGATACAAAGGGAAAGGTTTAAGTCACAATAGCGAATTTTATACCTCA
1 CGAATCCAGTACCACGAAGATACAAAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCA
32822811 GAAGCAT
66 GAAGCAT
32822818 GAAGGGAAAG
Statistics
Matches: 278, Mismatches: 48, Indels: 50
0.74 0.13 0.13
Matches are distributed among these distances:
85 1 0.00
86 124 0.45
88 1 0.00
89 2 0.01
90 3 0.01
91 3 0.01
92 2 0.01
93 3 0.01
95 62 0.22
98 77 0.28
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.19
Consensus pattern (86 bp):
CGAATCCAGTACCACGAAGATACAAAGGGAAAGGTTTAAGTCACAATGGCGAACCTTATACCTCA
GAAGCATTTAAGTCACAACGA
Found at i:32822589 original size:181 final size:182
Alignment explanation
Indices: 32822353--32822817 Score: 666
Period size: 181 Copynumber: 2.5 Consensus size: 182
32822343 CCACGAAGAT
* *
32822353 ATGAAGGGAAAGATTTAA-ATCGCAACAGCGAATCCAGTACCATGAAGATATAAAGGGAAAGGTT
1 ATGAAGGGAAAGATTTAAGCT-GC-A-AGCGAATCCAGTACCACGAAGATATAAAGGGAAAGGTT
* ** *
32822417 TAAGTCATAACGGCGAACCTTGTACCTCAGAAGCATTTAAGTCACAAC-GACGAATCCAGTACCG
63 TAAGTCACAATAGCGAACCTTGTACCTCAGAAGCATTTAAGCCACAACAG-CGAATCCAGTACCG
**
32822481 CGAAGACACAAAGGGAAAGGTTTAAATCGCAATGGCGAATTTTATACCTCAAAAGC
127 CGAAGACACAAAGGGAAAGGTTTAAATCGCAATGGCGAACCTTATACCTCAAAAGC
*
32822537 ATGAAGGGAAAGATTTAAGCTGCAA-CGAATCCAGTACCACAAAGATATAAAGGGAAAGGTTTAA
1 ATGAAGGGAAAGATTTAAGCTGCAAGCGAATCCAGTACCACGAAGATATAAAGGGAAAGGTTTAA
*
32822601 GTCACAATAGCGAACCTTGTACCTCAGAAGCATTTAAGCCACAACAGCGAATCTAGTACCGCGAA
66 GTCACAATAGCGAACCTTGTACCTCAGAAGCATTTAAGCCACAACAGCGAATCCAGTACCGCGAA
* * * *
32822666 GATACAAAGGGAAAGGTTTAAGTCGCAATGGTGAACCTTATACCTCAGAAGC
131 GACACAAAGGGAAAGGTTTAAATCGCAATGGCGAACCTTATACCTCAAAAGC
* * * *
32822718 ATGAAAGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCGCGAAGATACAAAGGGAAAGGTTT
1 ATGAAGGGAAAGATTTAAGCTGCAA--GCGAATCCAGTACCACGAAGATATAAAGGGAAAGGTTT
** *
32822783 AAGTCACAATAGCGAATTTTATACCTCAGAAGCAT
64 AAGTCACAATAGCGAACCTTGTACCTCAGAAGCAT
32822818 GAAGGGAAAG
Statistics
Matches: 254, Mismatches: 22, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
181 164 0.65
182 2 0.01
183 1 0.00
184 86 0.34
185 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.22, T:0.19
Consensus pattern (182 bp):
ATGAAGGGAAAGATTTAAGCTGCAAGCGAATCCAGTACCACGAAGATATAAAGGGAAAGGTTTAA
GTCACAATAGCGAACCTTGTACCTCAGAAGCATTTAAGCCACAACAGCGAATCCAGTACCGCGAA
GACACAAAGGGAAAGGTTTAAATCGCAATGGCGAACCTTATACCTCAAAAGC
Found at i:32822728 original size:49 final size:48
Alignment explanation
Indices: 32822633--32822890 Score: 193
Period size: 49 Copynumber: 5.3 Consensus size: 48
32822623 CTCAGAAGCA
* * * * *
32822633 TTTAAGCCACAACAGCGAAT-CTAGTACCGCGAAGATACAAAGGGAAAGG
1 TTTAAGTCGCAACGGCGAATCCTA-TACCTCGAAGATAGAAA-GGAAAGG
* * *
32822682 TTTAAGTCGCAATGGTGAA-CCTTATACCTCAGAAGCAT-GAAAGGAAAGA
1 TTTAAGTCGCAACGGCGAATCC-TATACCTC-GAAG-ATAGAAAGGAAAGG
* * *
32822731 TTTAAGCCGCAACGGCGAATCC-AGTACCGCGAAGATACAAAGGGAAAGG
1 TTTAAGTCGCAACGGCGAATCCTA-TACCTCGAAGATAGAAA-GGAAAGG
* ** ** * *
32822780 TTTAAGTCACAATAGCGAATTTTATACCTCAGAAGCAT-GAAGGGAAAGA
1 TTTAAGTCGCAACGGCGAATCCTATACCTC-GAAG-ATAGAAAGGAAAGG
* * * *
32822829 TTTAAGCCGCAACGGCGAATCCAATACCACGAAGATATAAAGGAGAAGG
1 TTTAAGTCGCAACGGCGAATCCTATACCTCGAAGATAGAAAGGA-AAGG
32822878 TTTAAGTCGCAAC
1 TTTAAGTCGCAAC
32822891 AACAAATTTA
Statistics
Matches: 160, Mismatches: 36, Indels: 26
0.72 0.16 0.12
Matches are distributed among these distances:
47 4 0.03
48 17 0.11
49 117 0.73
50 18 0.11
51 4 0.03
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.18
Consensus pattern (48 bp):
TTTAAGTCGCAACGGCGAATCCTATACCTCGAAGATAGAAAGGAAAGG
Found at i:32822927 original size:98 final size:98
Alignment explanation
Indices: 32822632--32822939 Score: 320
Period size: 98 Copynumber: 3.1 Consensus size: 98
32822622 CCTCAGAAGC
* * * * * * ***
32822632 ATTTAAGCCACAACAGCGAATCTAGTACCGCGAAGATACAAAGGGAAAGGTTTAAGTCGCAATGG
1 ATTTAAGCCGCAACGGCGAATCCAATACCACGAAGATACAAAGGGAAAGGTTTAAGTCACAACAA
* ** * *
32822697 TGAACCTTATACCTCAGAAGCATGAAAGGAAAG
66 CGAAATTTATACCTCAGAAGCACGAAGGGAAAG
* * * *
32822730 ATTTAAGCCGCAACGGCGAATCCAGTACCGCGAAGATACAAAGGGAAAGGTTTAAGTCACAATAG
1 ATTTAAGCCGCAACGGCGAATCCAATACCACGAAGATACAAAGGGAAAGGTTTAAGTCACAACAA
* *
32822795 CGAATTTTATACCTCAGAAGCATGAAGGGAAAG
66 CGAAATTTATACCTCAGAAGCACGAAGGGAAAG
* *
32822828 ATTTAAGCCGCAACGGCGAATCCAATACCACGAAGATATAAA-GGAGAAGGTTTAAGTCGCAACA
1 ATTTAAGCCGCAACGGCGAATCCAATACCACGAAGATACAAAGGGA-AAGGTTTAAGTCACAACA
32822892 AC-AAATTTAGTACCATGCAG-A-CACGAAGAGG-AAG
65 ACGAAATTTA-TACC-T-CAGAAGCACGAAG-GGAAAG
* *
32822926 ATTGAAGCCACAAC
1 ATTTAAGCCGCAAC
32822940 AGAAAAGAAG
Statistics
Matches: 186, Mismatches: 19, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
97 9 0.05
98 170 0.91
99 4 0.02
100 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.18
Consensus pattern (98 bp):
ATTTAAGCCGCAACGGCGAATCCAATACCACGAAGATACAAAGGGAAAGGTTTAAGTCACAACAA
CGAAATTTATACCTCAGAAGCACGAAGGGAAAG
Found at i:32829460 original size:146 final size:146
Alignment explanation
Indices: 32829285--32829637 Score: 424
Period size: 146 Copynumber: 2.4 Consensus size: 146
32829275 AAACAAGACC
* * * *
32829285 TTTTGGATACCCGGGGGTAAAATGATAATTTTAGACTCTCGGGGGCAAAATGGTAATTTTGAGAA
1 TTTTGGATATCCGAGGGTAAAATGGTAATTTTAGACTTTCGGGGGCAAAATGGTAATTTTGAGAA
* ** * * *
32829350 AA-TTTAGGGTTAGAAATGACATTTTAAATGTTCGGGGGTAAAACGATAATTTTCGAAAGAATC-
66 AATTTTAGGGTTAAAAATGACATTTTAAATAATCGAGGGTAAAACGATAATTTTCAAAAAAATCA
32829413 GAGATCAAAAATGAAACT
131 G-GATCAAAAATGAAA-T
* * ** *
32829431 TTTTGGATGTCCGAGGGTAAAATGGTAATTTTGGACTTTCAAGGGCAAAATGGTAATTTTGGGAA
1 TTTTGGATATCCGAGGGTAAAATGGTAATTTTAGACTTTCGGGGGCAAAATGGTAATTTTGAGAA
* * * * *
32829496 AATTTTGGGGTTAAAAATGACATTTTAGATAATCGAGGGTAAAATGGTAATTTTTAAAAAAATCA
66 AATTTTAGGGTTAAAAATGACATTTTAAATAATCGAGGGTAAAACGATAATTTTCAAAAAAATCA
**
32829561 GGATCAAAAATGGGAT
131 GGATCAAAAATGAAAT
* * *
32829577 TTTTGGACATCCGAGGGTAAAATGGTAATTTTGAGAATTTCGGGGTCAAAAATGG-AATTTT
1 TTTTGGATATCCGAGGGTAAAATGGTAATTTT-AGACTTTCGGGGGC-AAAATGGTAATTTT
32829638 TGAAAGTTCG
Statistics
Matches: 174, Mismatches: 29, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
146 89 0.51
147 77 0.44
148 8 0.05
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (146 bp):
TTTTGGATATCCGAGGGTAAAATGGTAATTTTAGACTTTCGGGGGCAAAATGGTAATTTTGAGAA
AATTTTAGGGTTAAAAATGACATTTTAAATAATCGAGGGTAAAACGATAATTTTCAAAAAAATCA
GGATCAAAAATGAAAT
Found at i:32829462 original size:29 final size:29
Alignment explanation
Indices: 32829430--32829490 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
32829420 AAAATGAAAC
* *
32829430 TTTTTGGA-TGTCCGAGGGTAAAATGGTAA
1 TTTTTGGACT-TCCAAGGGCAAAATGGTAA
*
32829459 -TTTTGGACTTTCAAGGGCAAAATGGTAA
1 TTTTTGGACTTCCAAGGGCAAAATGGTAA
32829487 TTTT
1 TTTT
32829491 GGGAAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
28 23 0.85
29 4 0.15
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (29 bp):
TTTTTGGACTTCCAAGGGCAAAATGGTAA
Found at i:32829631 original size:30 final size:31
Alignment explanation
Indices: 32829595--32829862 Score: 162
Period size: 30 Copynumber: 9.1 Consensus size: 31
32829585 ATCCGAGGGT
32829595 AAAATGGTAATTTTGAGAA-TTTCGGGGTCA
1 AAAATGGTAATTTTGAGAAGTTTCGGGGTCA
32829625 AAAATGG-AATTTTTGA-AAG-TTCGGGGGT-A
1 AAAATGGTAA-TTTTGAGAAGTTTC-GGGGTCA
* ***
32829654 AAAAT-GTAATTTTCAGAAGTTTTAAGGTCA
1 AAAATGGTAATTTTGAGAAGTTTCGGGGTCA
32829684 AAAATGG-AATTTTTGA-AAG-TTCGGGG-CA
1 AAAATGGTAA-TTTTGAGAAGTTTCGGGGTCA
* * **
32829712 AAAAT-GTAATTTTTAAAAGTTTCAAGGT-A
1 AAAATGGTAATTTTGAGAAGTTTCGGGGTCA
* * * *
32829741 AAAA-CGTAATTTTGGGAAGTTTCAGGGTTA
1 AAAATGGTAATTTTGAGAAGTTTCGGGGTCA
*
32829771 AAAATGG-AATTTTTG-GAAGTTT-GAGGGGCA
1 AAAATGGTAA-TTTTGAGAAGTTTCG-GGGTCA
*** *
32829801 AAAAT-GTAATTTTTG-GAAGTTT-TTAGTTA
1 AAAATGGTAA-TTTTGAGAAGTTTCGGGGTCA
* * *
32829830 AAAAT-GTAATTTTTAAAAGTTTAGGGGTCA
1 AAAATGGTAATTTTGAGAAGTTTCGGGGTCA
32829860 AAA
1 AAA
32829863 TACAATTTTT
Statistics
Matches: 187, Mismatches: 30, Indels: 42
0.72 0.12 0.16
Matches are distributed among these distances:
27 6 0.03
28 22 0.12
29 72 0.39
30 75 0.40
31 12 0.06
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (31 bp):
AAAATGGTAATTTTGAGAAGTTTCGGGGTCA
Found at i:32829658 original size:59 final size:60
Alignment explanation
Indices: 32829477--32829862 Score: 228
Period size: 59 Copynumber: 6.6 Consensus size: 60
32829467 TTTCAAGGGC
** * * *
32829477 AAAATGGTAATTTTGGGAAAA-TTTTGGGGTTAAAAAT-GACATTTTAGATAA--TCGAGGGT-
1 AAAATGGTAATTTT--GAAAAGTTTCAGGGTCAAAAATGGA-ATTTTTGA-AAGTTCGGGGGTA
* *** * * * * *
32829536 AAAATGGTAATTTTTAAAAAAATCAGGATCAAAAATGGGATTTTTGGACA-TCCGAGGGT-
1 AAAATGGTAATTTTGAAAAGTTTCAGGGTCAAAAATGGAATTTTT-GAAAGTTCGGGGGTA
* *
32829595 AAAATGGTAATTTTGAGAA-TTTCGGGGTCAAAAATGGAATTTTTGAAAGTTCGGGGGTA
1 AAAATGGTAATTTTGAAAAGTTTCAGGGTCAAAAATGGAATTTTTGAAAGTTCGGGGGTA
* * * * *
32829654 AAAAT-GTAATTTTCAGAAGTTTTAAGGTCAAAAATGGAATTTTTGAAAGTTC-GGGGCA
1 AAAATGGTAATTTTGAAAAGTTTCAGGGTCAAAAATGGAATTTTTGAAAGTTCGGGGGTA
* * * * * * * *
32829712 AAAAT-GTAATTTTTAAAAGTTTCAAGGT-AAAAACGTAATTTTGGGAAGTTTCAGGGTTA
1 AAAATGGTAATTTTGAAAAGTTTCAGGGTCAAAAATGGAATTTTTGAAAG-TTCGGGGGTA
* * * * * **** *
32829771 AAAATGG-AATTTTTG-GAAGTTTGAGGGGCAAAAATGTAATTTTTGGAAGTTTTTAGTTA
1 AAAATGGTAA-TTTTGAAAAGTTTCAGGGTCAAAAATGGAATTTTTGAAAGTTCGGGGGTA
*
32829830 AAAAT-GTAATTTTTAAAAGTTT-AGGGGTCAAAA
1 AAAATGGTAATTTTGAAAAGTTTCA-GGGTCAAAA
32829863 TACAATTTTT
Statistics
Matches: 263, Mismatches: 49, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
57 23 0.09
58 94 0.36
59 123 0.47
60 23 0.09
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.34
Consensus pattern (60 bp):
AAAATGGTAATTTTGAAAAGTTTCAGGGTCAAAAATGGAATTTTTGAAAGTTCGGGGGTA
Found at i:32829717 original size:87 final size:86
Alignment explanation
Indices: 32829595--32829821 Score: 258
Period size: 87 Copynumber: 2.6 Consensus size: 86
32829585 ATCCGAGGGT
* * ** *
32829595 AAAATGGTAA-TTTTGAGAATTTCGGGGTCAAAAATGGAATTTTTGAAAGTTCGGGGGTAAAAAT
1 AAAATGG-AATTTTTGA-AAGTTCGGGG-CAAAAATGTAATTTTTGAAAGTTC-AAGGTAAAAAC
*
32829659 GTAATTTTCAGAAGTTTTAAGGTCA
62 GTAATTTTCAGAAGTTTCAAGGTCA
*
32829684 AAAATGGAATTTTTGAAAGTTCGGGGCAAAAATGTAATTTTTAAAAGTTTCAAGGTAAAAACGTA
1 AAAATGGAATTTTTGAAAGTTCGGGGCAAAAATGTAATTTTTGAAAG-TTCAAGGTAAAAACGTA
** * *
32829749 ATTTTGGGAAGTTTCAGGGTTA
65 ATTTTCAGAAGTTTCAAGGTCA
* * *
32829771 AAAATGGAATTTTTGGAAGTTTGAGGGGCAAAAATGTAATTTTTGGAAGTT
1 AAAATGGAATTTTTGAAAG-TT-CGGGGCAAAAATGTAATTTTTGAAAGTT
32829822 TTTAGTTAAA
Statistics
Matches: 119, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
87 65 0.55
88 18 0.15
89 36 0.30
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.34
Consensus pattern (86 bp):
AAAATGGAATTTTTGAAAGTTCGGGGCAAAAATGTAATTTTTGAAAGTTCAAGGTAAAAACGTAA
TTTTCAGAAGTTTCAAGGTCA
Found at i:32829833 original size:29 final size:29
Alignment explanation
Indices: 32829590--32829882 Score: 177
Period size: 29 Copynumber: 10.0 Consensus size: 29
32829580 TGGACATCCG
*
32829590 AGGGT-AAAATGGTAA-TTTTGAGAA-TTTC
1 AGGGTAAAAAT-GTAATTTTTG-GAAGTTTA
* * * **
32829618 GGGGTCAAAAATGGAATTTTTGAAAGTTCG
1 AGGGT-AAAAATGTAATTTTTGGAAGTTTA
* **
32829648 GGGGTAAAAATGTAATTTTCAGAAGTTTTA
1 AGGGTAAAAATGTAATTTTTGGAAG-TTTA
* * *
32829678 A-GGTCAAAAATGGAATTTTTGAAAG-TTC
1 AGGGT-AAAAATGTAATTTTTGGAAGTTTA
* * **
32829706 GGGGCAAAAATGTAATTTTTAAAAGTTTCA
1 AGGGTAAAAATGTAATTTTTGGAAGTTT-A
* * *
32829736 A-GGTAAAAACGTAATTTTGGGAAGTTTC
1 AGGGTAAAAATGTAATTTTTGGAAGTTTA
*
32829764 AGGGTTAAAAATGGAATTTTTGGAAGTTTGA
1 AGGG-TAAAAATGTAATTTTTGGAAGTTT-A
* * *
32829795 GGGGCAAAAATGTAATTTTTGGAAGTTTTT
1 AGGGTAAAAATGTAATTTTTGGAAG-TTTA
* **
32829825 A-GTTAAAAATGTAATTTTTAAAAGTTTA
1 AGGGTAAAAATGTAATTTTTGGAAGTTTA
* * **
32829853 GGGGTCAAAATACAATTTTTGGACAGTTTA
1 AGGGTAAAAATGTAATTTTTGGA-AGTTTA
32829883 GGGACCTTCA
Statistics
Matches: 200, Mismatches: 50, Indels: 28
0.72 0.18 0.10
Matches are distributed among these distances:
28 28 0.14
29 85 0.43
30 81 0.41
31 6 0.03
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.35
Consensus pattern (29 bp):
AGGGTAAAAATGTAATTTTTGGAAGTTTA
Found at i:32829881 original size:59 final size:60
Alignment explanation
Indices: 32829711--32829881 Score: 167
Period size: 59 Copynumber: 2.9 Consensus size: 60
32829701 AGTTCGGGGC
* *
32829711 AAAAATGTAATTTTTAAAAGTTTCA-AGGT-AAAA-ACGTAATTTTGGGAAG-TTTCAGGGTT
1 AAAAATGTAATTTTTAAAAGTTTCAGGGGTCAAAATAC--AATTTTTGGAAGTTTTCA-GGTT
* ** * ** *
32829770 AAAAATGGAATTTTTGGAAGTTTGAGGGG-CAAAAATGTAATTTTTGGAAGTTTTTA-GTT
1 AAAAATGTAATTTTTAAAAGTTTCAGGGGTC-AAAATACAATTTTTGGAAGTTTTCAGGTT
32829829 AAAAATGTAATTTTTAAAAGTTT-AGGGGTCAAAATACAATTTTTGGACAGTTT
1 AAAAATGTAATTTTTAAAAGTTTCAGGGGTCAAAATACAATTTTTGGA-AGTTT
32829882 AGGGACCTTC
Statistics
Matches: 91, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
58 20 0.22
59 50 0.55
60 13 0.14
61 8 0.09
ACGTcount: A:0.37, C:0.04, G:0.21, T:0.37
Consensus pattern (60 bp):
AAAAATGTAATTTTTAAAAGTTTCAGGGGTCAAAATACAATTTTTGGAAGTTTTCAGGTT
Found at i:32831786 original size:17 final size:17
Alignment explanation
Indices: 32831766--32831860 Score: 109
Period size: 17 Copynumber: 5.6 Consensus size: 17
32831756 AAATAATTTT
*
32831766 AATTCAAAATAAATTCA
1 AATTTAAAATAAATTCA
*
32831783 AATTTAAAATAAATTTA
1 AATTTAAAATAAATTCA
*** * *
32831800 AACCCAAAATGAATTTA
1 AATTTAAAATAAATTCA
*
32831817 AATTTAAAATAAATTCG
1 AATTTAAAATAAATTCA
*
32831834 AATTTAAAATAAATTAA
1 AATTTAAAATAAATTCA
32831851 AATTTAAAAT
1 AATTTAAAAT
32831861 TAAAAGTTGG
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 64 1.00
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (17 bp):
AATTTAAAATAAATTCA
Found at i:32831860 original size:51 final size:50
Alignment explanation
Indices: 32831756--32831852 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 50
32831746 TTTTAATATT
* *
32831756 AAATAATTTTAATTCAAAATAAATTCAAATTTAAAATAAATTTAAACCCA
1 AAATAATTTAAATTCAAAATAAATTCAAATTTAAAATAAATTAAAACCCA
* *
32831806 AAATGAATTTAAATTTAAAATAAATTCGAATTTAAAATAAATTAAAA
1 AAAT-AATTTAAATTCAAAATAAATTCAAATTTAAAATAAATTAAAA
32831853 TTTAAAATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 4 0.10
51 38 0.90
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (50 bp):
AAATAATTTAAATTCAAAATAAATTCAAATTTAAAATAAATTAAAACCCA
Found at i:32832708 original size:8 final size:7
Alignment explanation
Indices: 32832688--32832745 Score: 57
Period size: 7 Copynumber: 8.0 Consensus size: 7
32832678 GGATTCGATG
32832688 AAGAAAA
1 AAGAAAA
32832695 AAGAAAA
1 AAGAAAA
32832702 AAGGAAAAA
1 AA-G-AAAA
32832711 AAGAAAA
1 AAGAAAA
32832718 TAA-AAAA
1 -AAGAAAA
32832725 TAA-AAAA
1 -AAGAAAA
*
32832732 AAGGAAA
1 AAGAAAA
32832739 AAGAAAA
1 AAGAAAA
32832746 GGAGAGGTCG
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
6 2 0.04
7 33 0.73
8 4 0.09
9 6 0.13
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (7 bp):
AAGAAAA
Found at i:32832710 original size:9 final size:8
Alignment explanation
Indices: 32832691--32832740 Score: 50
Period size: 8 Copynumber: 6.5 Consensus size: 8
32832681 TTCGATGAAG
32832691 AAAAAAGA
1 AAAAAAGA
*
32832699 AAAAAGGA
1 AAAAAAGA
32832707 AAAAAAGA
1 AAAAAAGA
*
32832715 AAATAA-A
1 AAAAAAGA
*
32832722 AAATAA-A
1 AAAAAAGA
*
32832729 AAAAAGGA
1 AAAAAAGA
32832737 AAAA
1 AAAA
32832741 GAAAAGGAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
7 12 0.33
8 24 0.67
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (8 bp):
AAAAAAGA
Found at i:32833751 original size:50 final size:50
Alignment explanation
Indices: 32833661--32834251 Score: 365
Period size: 49 Copynumber: 12.0 Consensus size: 50
32833651 AGAAAAACAT
* * *
32833661 GAAGATTTGAAGGGAAAGGTTGAGACCGCAACGACGAACCCGGA-ACCTAA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCC-GATACCTAA
* * * *
32833711 GAAGATGTGATGGGAAAGGTTGAGGCCGTAACGGCAAACCCGATACC-AT
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAA
* * * * * * *
32833760 GAAGATTTGAAGGG-AAGGATTGAGGCCGCGACGGTGAATCTGGTACCTTA
1 GAAGATGTGAAGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGATACCTAA
* * *
32833810 GAAGATGTG-TGGGCAAGGTTGAGGCCGCAACGGCGAACCCGATATCTAA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAA
* * *
32833859 GAAAATGTGAAGGGGAAGGTTGAGGCCGCAACGACGAACCCGATACCTTAA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACC-TAA
* * * * * * * * *
32833910 -AAGATATTATGGAAAAGATTGAGGCCACAACGGTGAATCCGATTCC-ATA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTA-A
* * * *
32833959 G-AGATGT-AATGGGAAAGGTTGAGACCGCAACGGTGAACCCGGTAGC-ACA
1 GAAGATGTGAA-GGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTA-A
* * * * *
32834008 -AAGATTTGAAAGGAAAAGTTGAGGCCGCCACGACGAACCCTG-TACC-ACA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCC-GATACCTA-A
* * * * * *
32834057 -AAAATTTGAAAGGAAAGGTTGAGGCTGCAACGGCGAACCTGGTACCTTAA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACC-TAA
* * * * * * * * **
32834107 -AAGATATTATGGG-AAGGATTGAGGCCGCAACGCCTAATCTGGTTTC-ATA
1 GAAGATGTGAAGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGATACCTA-A
* * * * * *
32834156 G-AGATG-CAATGGGAAAGGTTGAGGTCGCAATGGTGAACCCGGTACC-AT
1 GAAGATGTGAA-GGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAA
* * * *
32834204 GAATATTTGAAGGGAAAGGTTGAGGCCGCAACAGCAAACCCGATACCT
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCT
32834252 TAAAAATATG
Statistics
Matches: 416, Mismatches: 102, Indels: 46
0.74 0.18 0.08
Matches are distributed among these distances:
48 10 0.02
49 245 0.59
50 157 0.38
51 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.30, T:0.18
Consensus pattern (50 bp):
GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGATACCTAA
Found at i:32833870 original size:99 final size:99
Alignment explanation
Indices: 32833668--32834250 Score: 294
Period size: 99 Copynumber: 5.9 Consensus size: 99
32833658 CATGAAGATT
* * * ** * * *
32833668 TGAAGGGAAAGGTTGAGACCGCAACGACGAACCCGGAACCTAAGAAGATGTGATGGGAAAGGTTG
1 TGAAGGGGAAGGTTGAGGCCGCGACGGTGAATCTGGTACCTAAGAAGATGTGATGGGAAAGGTTG
* * * *
32833733 AGGCCGTAACGGCAAACCCGATACCATGAAGATT
66 AGGCCGCAACGGCAAACCCGATACCAAGAAAATG
* *
32833767 TGAA-GGGAAGGATTGAGGCCGCGACGGTGAATCTGGTACCTTAGAAGATGTG-TGGGCAAGGTT
1 TGAAGGGGAAGG-TTGAGGCCGCGACGGTGAATCTGGTACCTAAGAAGATGTGATGGGAAAGGTT
* *
32833830 GAGGCCGCAACGGCGAACCCGATATCTAAGAAAATG
65 GAGGCCGCAACGGCAAACCCGATA-CCAAGAAAATG
* ** * * * * * * *
32833866 TGAAGGGGAAGGTTGAGGCCGCAACGACGAACCCGATACCTTAA-AAGATATTATGGAAAAGATT
1 TGAAGGGGAAGGTTGAGGCCGCGACGGTGAATCTGGTACC-TAAGAAGATGTGATGGGAAAGGTT
* ** * * *
32833930 GAGGCCACAACGGTGAATCCGATTCCATAG-AGATG
65 GAGGCCGCAACGGCAAACCCGATACCA-AGAAAATG
* * * * * * * ** *
32833965 T-AATGGGAAAGGTTGAGACCGCAACGGTGAACCCGGTAGC-ACA-AAGATTTGAAAGGAAAAGT
1 TGAA-GGGGAAGGTTGAGGCCGCGACGGTGAATCTGGTACCTA-AGAAGATGTGATGGGAAAGGT
* * * *
32834027 TGAGGCCGCCACGACGAACCCTG-TACCACA-AAAATT
64 TGAGGCCGCAACGGCAAACCC-GATACCA-AGAAAATG
* * * * * * * *
32834063 TGAAAGGAAAGGTTGAGGCTGCAACGGCGAACCTGGTACCTTAA-AAGATATTATGGG-AAGGAT
1 TGAAGGGGAAGGTTGAGGCCGCGACGGTGAATCTGGTACC-TAAGAAGATGTGATGGGAAAGG-T
* * * * * ** *
32834126 TGAGGCCGCAACGCCTAATCTGGTTTCATAG-AGATG
64 TGAGGCCGCAACGGCAAACCCGATACCA-AGAAAATG
* * * * * * * * * * *
32834162 -CAATGGGAAAGGTTGAGGTCGCAATGGTGAACCCGGTACC-ATGAATATTTGAAGGGAAAGGTT
1 TGAA-GGGGAAGGTTGAGGCCGCGACGGTGAATCTGGTACCTAAGAAGATGTGATGGGAAAGGTT
*
32834225 GAGGCCGCAACAGCAAACCCGATACC
65 GAGGCCGCAACGGCAAACCCGATACC
32834251 TTAAAAATAT
Statistics
Matches: 368, Mismatches: 97, Indels: 39
0.73 0.19 0.08
Matches are distributed among these distances:
97 2 0.01
98 143 0.39
99 183 0.50
100 40 0.11
ACGTcount: A:0.33, C:0.19, G:0.30, T:0.17
Consensus pattern (99 bp):
TGAAGGGGAAGGTTGAGGCCGCGACGGTGAATCTGGTACCTAAGAAGATGTGATGGGAAAGGTTG
AGGCCGCAACGGCAAACCCGATACCAAGAAAATG
Found at i:32833964 original size:148 final size:149
Alignment explanation
Indices: 32833672--32834138 Score: 423
Period size: 148 Copynumber: 3.1 Consensus size: 149
32833662 AAGATTTGAA
* *
32833672 GGGAAAGGTTGAGACCGCAACGACGAACCCGGA-ACCTAAGAAGATGTGATGGGAAAGGTTGAGG
1 GGGAAAGGTTGAGACCGCAACGGCGAACCC-GATACCTAAGAAGATGTGAAGGGAAAGGTTGAGG
* * * * * * * * *
32833736 CCGTAACGGCAAACCCGATACCATGAAGATTTGAAGGGAAGGATTGAGGCCGCGACGGTGAATCT
65 CCGCAACGACGAACCCGATACCATAAAGATTTGAAGGAAAAGATTGAGGCCACAACGGTGAATCC
* * *
32833801 GGTACCTTAGAAGATGT-GT
130 GATACCATAGAAGATGTAAT
* * * * *
32833820 GGGCAAGGTTGAGGCCGCAACGGCGAACCCGATATCTAAGAAAATGTGAAGGGGAAGGTTGAGGC
1 GGGAAAGGTTGAGACCGCAACGGCGAACCCGATACCTAAGAAGATGTGAAGGGAAAGGTTGAGGC
* *
32833885 CGCAACGACGAACCCGATACCTTAAAAGATATT-ATGGAAAAGATTGAGGCCACAACGGTGAATC
66 CGCAACGACGAACCCGATACCAT-AAAGAT-TTGAAGGAAAAGATTGAGGCCACAACGGTGAATC
*
32833949 CGATTCCATAG-AGATGTAAT
129 CGATACCATAGAAGATGTAAT
* * * * * *
32833969 GGGAAAGGTTGAGACCGCAACGGTGAACCCGGTAGC-ACA-AAGATTTGAAAGGAAAAGTTGAGG
1 GGGAAAGGTTGAGACCGCAACGGCGAACCCGATACCTA-AGAAGATGTGAAGGGAAAGGTTGAGG
* * * * ** *
32834032 CCGCCACGACGAACCCTG-TACCACAAAAATTTGAAAGG-AAAGGTTGAGGCTGCAACGGCGAA-
65 CCGCAACGACGAACCC-GATACCATAAAGATTTG-AAGGAAAAGATTGAGGCCACAACGGTGAAT
* * * * *
32834094 CCTGGTACCTTAAAAGATATTAT
128 CC-GATACCATAGAAGATGTAAT
*
32834117 GGG-AAGGATTGAGGCCGCAACG
1 GGGAAAGG-TTGAGACCGCAACG
32834139 CCTAATCTGG
Statistics
Matches: 260, Mismatches: 48, Indels: 22
0.79 0.15 0.07
Matches are distributed among these distances:
146 4 0.02
147 37 0.14
148 145 0.56
149 72 0.28
150 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.31, T:0.17
Consensus pattern (149 bp):
GGGAAAGGTTGAGACCGCAACGGCGAACCCGATACCTAAGAAGATGTGAAGGGAAAGGTTGAGGC
CGCAACGACGAACCCGATACCATAAAGATTTGAAGGAAAAGATTGAGGCCACAACGGTGAATCCG
ATACCATAGAAGATGTAAT
Found at i:32834129 original size:197 final size:197
Alignment explanation
Indices: 32833860--32834232 Score: 514
Period size: 197 Copynumber: 1.9 Consensus size: 197
32833850 GATATCTAAG
* *
32833860 AAAATGTGAAGGGGAAGGTTGAGGCCGCAACGACGAACCCGATACCTTAAAAGATATTATGGAAA
1 AAAATGTGAAAGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCTTAAAAGATATTATGGAAA
* *
32833925 AGATTGAGGCCACAACG-GTGAATCCGATTCCATAGAGATGTAATGGGAAAGGTTGAGACCGCAA
66 AGATTGAGGCCACAACGCCT-AATCCGATTCCATAGAGATGCAATGGGAAAGGTTGAGACCGCAA
*
32833989 CGGTGAACCCGGTAGCACAAAGATTTGAAAGGAAAAGTTGAGGCCGCCACGACGAACCCTGTACC
130 CGGTGAACCCGGTACCACAAAGATTTGAAAGGAAAAGTTGAGGCCGCCACGACGAACCCTGTACC
32834054 ACA
195 ACA
* * * * * *
32834057 AAAATTTGAAAGGAAAGGTTGAGGCTGCAACGGCGAACCTGGTACCTTAAAAGATATTATGGGAA
1 AAAATGTGAAAGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCTTAAAAGATATTATGGAAA
* * * * * ** *
32834122 GGATTGAGGCCGCAACGCCTAATCTGGTTTCATAGAGATGCAATGGGAAAGGTTGAGGTCGCAAT
66 AGATTGAGGCCACAACGCCTAATCCGATTCCATAGAGATGCAATGGGAAAGGTTGAGACCGCAAC
** * * *
32834187 GGTGAACCCGGTACCATGAATATTTGAAGGGAAAGGTTGAGGCCGC
131 GGTGAACCCGGTACCACAAAGATTTGAAAGGAAAAGTTGAGGCCGC
32834233 AACAGCAAAC
Statistics
Matches: 151, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
197 150 0.99
198 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (197 bp):
AAAATGTGAAAGGAAAGGTTGAGGCCGCAACGACGAACCCGATACCTTAAAAGATATTATGGAAA
AGATTGAGGCCACAACGCCTAATCCGATTCCATAGAGATGCAATGGGAAAGGTTGAGACCGCAAC
GGTGAACCCGGTACCACAAAGATTTGAAAGGAAAAGTTGAGGCCGCCACGACGAACCCTGTACCA
CA
Found at i:32834671 original size:78 final size:78
Alignment explanation
Indices: 32834522--32834672 Score: 189
Period size: 78 Copynumber: 1.9 Consensus size: 78
32834512 GAAGATTCCG
* * * * * *
32834522 ATCTCTTACCCCGATCTTGGAGCAAATCACAGTAATTCGATCTTTTATCCCGAGCCTGAGGTAGA
1 ATCTCTTACCCCGAGCTTGGAGCAAATCACAGCAATTCGATATTTTACCCCGAGCCTGAGGCAAA
*
32834587 TTACCATCATCCA
66 TCACCATCATCCA
* *
32834600 ATCTCTTACCCCGAGCTTAGG-GCAAATTACAGCCATTCGATATTTTACCCCGAGCCT-AGGGCA
1 ATCTCTTACCCCGAGCTT-GGAGCAAATCACAGCAATTCGATATTTTACCCCGAGCCTGA-GGCA
32834663 AATCACCATC
64 AATCACCATC
32834673 CATTTGATTT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
77 1 0.02
78 59 0.95
79 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (78 bp):
ATCTCTTACCCCGAGCTTGGAGCAAATCACAGCAATTCGATATTTTACCCCGAGCCTGAGGCAAA
TCACCATCATCCA
Found at i:32834739 original size:118 final size:117
Alignment explanation
Indices: 32834572--32834855 Score: 315
Period size: 118 Copynumber: 2.4 Consensus size: 117
32834562 TCTTTTATCC
* * * * *
32834572 CGAGCCTGAGGTAGATTACCA-TCATCCAATCTCTTACCCCGAGCTTAGGGCAAATTACAGCCAT
1 CGAGCCTAAGGCAGATTA-CAGCCATCTAATCTCTTACCCCGAGCCTAGGGCAAATTACAGCCAT
* ** * * *
32834636 TCGATATTTTACCCCGAGCCTAGGGCAAATCACCATCCATTTGATTTTTTACCT
65 CCGATATTTTACCCCGAGCCTAGGGCAAATCACCAT-CAACTAATCTCTTACCT
* * * * *
32834690 CGAGCCTAGGGCATA-T-CA-CCATAAGTTAATCTCTTACCCCGAGCCTAGGGCAGATTATAGCC
1 CGAGCCTAAGGCAGATTACAGCCAT---CTAATCTCTTACCCCGAGCCTAGGGCAAATTACAGCC
* * * *
32834752 ATCCGATCTTTTACCCCGAGCTTGGGGTAAATCACCATCAACTAATCTCTTACCT
63 ATCCGATATTTTACCCCGAGCCTAGGGCAAATCACCATCAACTAATCTCTTACCT
32834807 CGAGCCTAAGGCAGATTACAGCCATCTAATCTCTTACCCCGAGCCTAGG
1 CGAGCCTAAGGCAGATTACAGCCATCTAATCTCTTACCCCGAGCCTAGG
32834856 ACAGATCATC
Statistics
Matches: 137, Mismatches: 23, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
115 5 0.04
117 49 0.36
118 77 0.56
119 2 0.01
120 4 0.03
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (117 bp):
CGAGCCTAAGGCAGATTACAGCCATCTAATCTCTTACCCCGAGCCTAGGGCAAATTACAGCCATC
CGATATTTTACCCCGAGCCTAGGGCAAATCACCATCAACTAATCTCTTACCT
Found at i:32834788 original size:78 final size:78
Alignment explanation
Indices: 32834644--32834855 Score: 246
Period size: 78 Copynumber: 2.7 Consensus size: 78
32834634 ATTCGATATT
* * * * * * *
32834644 TTACCCCGAGCCTAGGGCAAATCACCATCCATTTGATTTTTTACCTCGAGCCTAGGGCATATCAC
1 TTACCCCGAGCCTAGGGCAGATTA-CAGCCATCTGATCTTTTACCCCGAGCCTAGGGCAAATCAC
*
32834709 CAT-AAGTTAATCTC
65 CATCAA-CTAATCTC
* * * * *
32834723 TTACCCCGAGCCTAGGGCAGATTATAGCCATCCGATCTTTTACCCCGAGCTTGGGGTAAATCACC
1 TTACCCCGAGCCTAGGGCAGATTACAGCCATCTGATCTTTTACCCCGAGCCTAGGGCAAATCACC
32834788 ATCAACTAATCTC
66 ATCAACTAATCTC
* * * *
32834801 TTACCTCGAGCCTAAGGCAGATTACAGCCATCTAATCTCTTACCCCGAGCCTAGG
1 TTACCCCGAGCCTAGGGCAGATTACAGCCATCTGATCTTTTACCCCGAGCCTAGG
32834856 ACAGATCATC
Statistics
Matches: 111, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
78 87 0.78
79 24 0.22
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (78 bp):
TTACCCCGAGCCTAGGGCAGATTACAGCCATCTGATCTTTTACCCCGAGCCTAGGGCAAATCACC
ATCAACTAATCTC
Found at i:32834861 original size:39 final size:39
Alignment explanation
Indices: 32834594--32834855 Score: 185
Period size: 39 Copynumber: 6.7 Consensus size: 39
32834584 AGATTACCAT
* *
32834594 CATCCAATCTCTTACCCCGAGCTTAGGGCAAATTACAGC
1 CATCTAATCTCTTACCCCGAGCCTAGGGCAAATTACAGC
* * *
32834633 CATTCGATAT-T-TTACCCCGAGCCTAGGGCAAATCACCATC
1 CA-TCTA-ATCTCTTACCCCGAGCCTAGGGCAAATTA-CAGC
* * * * * *
32834673 CATTTGATTTTTTACCTCGAGCCTAGGGCATA-T-CA-C
1 CATCTAATCTCTTACCCCGAGCCTAGGGCAAATTACAGC
* * *
32834709 CATAAGTTAATCTCTTACCCCGAGCCTAGGGCAGATTATAGC
1 CAT---CTAATCTCTTACCCCGAGCCTAGGGCAAATTACAGC
** * * * * * *
32834751 CATCCGATCTTTTACCCCGAGCTTGGGGTAAATCACCA-T
1 CATCTAATCTCTTACCCCGAGCCTAGGGCAAATTA-CAGC
* * * *
32834790 CAACTAATCTCTTACCTCGAGCCTAAGGCAGATTACAGC
1 CATCTAATCTCTTACCCCGAGCCTAGGGCAAATTACAGC
32834829 CATCTAATCTCTTACCCCGAGCCTAGG
1 CATCTAATCTCTTACCCCGAGCCTAGG
32834856 ACAGATCATC
Statistics
Matches: 168, Mismatches: 42, Indels: 26
0.71 0.18 0.11
Matches are distributed among these distances:
36 4 0.02
37 2 0.01
38 4 0.02
39 121 0.72
40 30 0.18
41 3 0.02
42 4 0.02
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (39 bp):
CATCTAATCTCTTACCCCGAGCCTAGGGCAAATTACAGC
Found at i:32834877 original size:39 final size:39
Alignment explanation
Indices: 32834717--32834882 Score: 113
Period size: 39 Copynumber: 4.3 Consensus size: 39
32834707 ACCATAAGTT
* * * *
32834717 AATCTCTTACCCCGAGCCTAGGGCAGATTATAGCCATCC
1 AATCTCTTACCCCGAGCCTAAGGCAGATCACAGCCAGCC
* * * ** * * * * *
32834756 GATCTTTTACCCCGAGCTTGGGGTAAATCACCA-TCAACT
1 AATCTCTTACCCCGAGCCTAAGGCAGATCA-CAGCCAGCC
* * * *
32834795 AATCTCTTACCTCGAGCCTAAGGCAGATTACAGCCATCT
1 AATCTCTTACCCCGAGCCTAAGGCAGATCACAGCCAGCC
*
32834834 AATCTCTTACCCCGAGCCT-AGGACAGATCATCA-CTAGCC
1 AATCTCTTACCCCGAGCCTAAGG-CAGATCA-CAGCCAGCC
32834873 AATCTCTTAC
1 AATCTCTTAC
32834883 TGGGGTAGAT
Statistics
Matches: 96, Mismatches: 27, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
38 5 0.05
39 88 0.92
40 3 0.03
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (39 bp):
AATCTCTTACCCCGAGCCTAAGGCAGATCACAGCCAGCC
Found at i:32834877 original size:78 final size:78
Alignment explanation
Indices: 32834684--32834882 Score: 195
Period size: 78 Copynumber: 2.6 Consensus size: 78
32834674 ATTTGATTTT
* * * ** * *
32834684 TTACCTCGAGCCTAGGGCATATCACCAT-AAGTTAATCTCTTACCCCGAGCCTAGGGCAGATTAT
1 TTACCCCGAGCCTAGGACAAATCACCATCAA-CCAATCTCTTACCCCGAGCCTAAGGCAGATTAC
* *
32834748 AGCCATCCGATCTT
65 AGCCATCCAATCTC
* * ** * *
32834762 TTACCCCGAGCTTGGGGTAAATCACCATCAACTAATCTCTTACCTCGAGCCTAAGGCAGATTACA
1 TTACCCCGAGCCTAGGACAAATCACCATCAACCAATCTCTTACCCCGAGCCTAAGGCAGATTACA
*
32834827 GCCATCTAATCTC
66 GCCATCCAATCTC
* * *
32834840 TTACCCCGAGCCTAGGACAGATCATCA-CTAGCCAATCTCTTAC
1 TTACCCCGAGCCTAGGACAAATCACCATC-AACCAATCTCTTAC
32834883 TGGGGTAGAT
Statistics
Matches: 99, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
77 1 0.01
78 96 0.97
79 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (78 bp):
TTACCCCGAGCCTAGGACAAATCACCATCAACCAATCTCTTACCCCGAGCCTAAGGCAGATTACA
GCCATCCAATCTC
Found at i:32835155 original size:37 final size:36
Alignment explanation
Indices: 32835056--32835155 Score: 155
Period size: 37 Copynumber: 2.7 Consensus size: 36
32835046 ATAAAGCGGT
*
32835056 CGTCTTCCTGATGAGATACAGAGAAAGTGACCAAATT
1 CGTCTTCCTGATGAGATACAGAG-AAGTGACCAAATC
* *
32835093 CATCTTTCTGATGAGATACAGAGAAGTGGACCAAATC
1 CGTCTTCCTGATGAGATACAGAGAAGT-GACCAAATC
32835130 CGTCTTCCTGATGAGATACAGAGAAG
1 CGTCTTCCTGATGAGATACAGAGAAG
32835156 CGGATTGAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
36 4 0.07
37 53 0.93
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (36 bp):
CGTCTTCCTGATGAGATACAGAGAAGTGACCAAATC
Found at i:32835552 original size:209 final size:207
Alignment explanation
Indices: 32835091--32835627 Score: 699
Period size: 209 Copynumber: 2.6 Consensus size: 207
32835081 AGTGACCAAA
* * * * *
32835091 TTCATCTTT-CTGATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAA
1 TTCAT-TTTCCTGACGAGATGCAGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATATAGAGAA
* * * * * *
32835155 GCGGATTGAAATAATGAGGTGGTCA-CTTCCTGATGAGATATAGAGAAGTAGAGCAAGTCCATGA
65 GTGGATTAAAATAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAGTCCATGA
* * * *
32835219 AGCGAAGCTCAATATGAATGAGACTTTAAACCCCATATTTCTGATGAGATACAGAGAAGTGAGTC
130 AGCGAAACTCAATATCAATGAAACTTTAAACCCCATATTCCTGATGAGATACAGAGAAGTGAGTC
*
32835284 AAATCAATAAGTG
195 AAAGCAATAAGTG
* * *
32835297 ATCATCTTCCTGACGAGATGCAGAGAAGTGAACCAAA-TCAGTCTTCCTGATGAGATATAGATAA
1 TTCATTTTCCTGACGAGATGCAGAGAAGTGAACCAAATTC-GTCTTCCTGATGAGATATAGAGAA
32835361 GTGGATTAAAATAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAA-TCCAATG
65 GTGGATTAAAATAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAGTCC-ATG
* * *
32835425 AAGTGAAACTCAATATCAGTGAAACTTTCAAACCCCATCTTCCTGATGAGATACAGA-AGAGT-A
129 AAGCGAAACTCAATATCAATGAAACTTT-AAACCCCATATTCCTGATGAGATACAGAGA-AGTGA
**
32835488 GGTTGAAGCAATAAAGTG
192 -GTCAAAGCAAT-AAGTG
32835506 TTCATTTTCCTGACGAGATGCAGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATATAGAGAAG
1 TTCATTTTCCTGACGAGATGCAGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATATAGAGAAG
** * * * *
32835571 TGGATTAAAGCAGTTAAGCGGTCATCTTCCTTATGAGATGCAGAGAAGTAGACCAAG
66 TGGATTAAAATAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAG
32835628 AGATGAAGCC
Statistics
Matches: 288, Mismatches: 33, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
205 3 0.01
206 75 0.26
207 57 0.20
208 37 0.13
209 114 0.40
210 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (207 bp):
TTCATTTTCCTGACGAGATGCAGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATATAGAGAAG
TGGATTAAAATAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAGTCCATGAA
GCGAAACTCAATATCAATGAAACTTTAAACCCCATATTCCTGATGAGATACAGAGAAGTGAGTCA
AAGCAATAAGTG
Found at i:32835626 original size:85 final size:85
Alignment explanation
Indices: 32835462--32835619 Score: 203
Period size: 85 Copynumber: 1.9 Consensus size: 85
32835452 TCAAACCCCA
* * * *
32835462 TCTTCCTGATGAGATACAGAAGAGTAGGTTGAAGCAATAAAGTGTTCATTTTCCTGACGAGATGC
1 TCTTCCTGATGAGATACAGAAGAGTAGGTTAAAGCAATAAAGCGGTCATCTTCCTGACGAGATGC
32835527 AGAGAAGTGAACCAAATTCG
66 AGAGAAGTGAACCAAATTCG
* * * * *
32835547 TCTTCCTGATGAGATATAG-AGAAGT-GGATTAAAGCAGTTAAGCGGTCATCTTCCTTATGAGAT
1 TCTTCCTGATGAGATACAGAAG-AGTAGG-TTAAAGCAATAAAGCGGTCATCTTCCTGACGAGAT
32835610 GCAGAGAAGT
64 GCAGAGAAGT
32835620 AGACCAAGAG
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 4 0.06
85 58 0.94
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (85 bp):
TCTTCCTGATGAGATACAGAAGAGTAGGTTAAAGCAATAAAGCGGTCATCTTCCTGACGAGATGC
AGAGAAGTGAACCAAATTCG
Found at i:32836019 original size:17 final size:17
Alignment explanation
Indices: 32835997--32836043 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
32835987 GCTTTAATTG
*
32835997 AATTTATTTTAAGTTTA
1 AATTTATTTTAAATTTA
32836014 AATTTATTTTAAATTTA
1 AATTTATTTTAAATTTA
*
32836031 AATTTATCTTAAA
1 AATTTATTTTAAA
32836044 AGTTCAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (17 bp):
AATTTATTTTAAATTTA
Found at i:32836457 original size:2 final size:2
Alignment explanation
Indices: 32836450--32836502 Score: 51
Period size: 2 Copynumber: 27.5 Consensus size: 2
32836440 TTTTTCATAC
*
32836450 AT AT AT AT AT AT AT AT AT AT AT AT ACT -T AT AT TT AT -T CAT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT -AT AT
32836491 AT AT -T AT AT AT A
1 AT AT AT AT AT AT A
32836503 CATTTATTAG
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
1 4 0.09
2 37 0.86
3 2 0.05
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:32836499 original size:28 final size:31
Alignment explanation
Indices: 32836461--32836529 Score: 83
Period size: 33 Copynumber: 2.3 Consensus size: 31
32836451 TATATATATA
32836461 TATATATATATATAC-TTA-TA-TTTATTCAT
1 TATAT-TATATATACATTATTAGTTTATTCAT
32836490 TATATTATATATACATTTATTAGTTTTATTCAT
1 TATATTATATATACA-TTATTAG-TTTATTCAT
32836523 T-TATTAT
1 TATATTAT
32836530 GTCGAAATCA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
28 9 0.26
29 5 0.14
30 3 0.09
31 2 0.06
32 6 0.17
33 10 0.29
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.58
Consensus pattern (31 bp):
TATATTATATATACATTATTAGTTTATTCAT
Found at i:32836523 original size:17 final size:15
Alignment explanation
Indices: 32836479--32836529 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 15
32836469 TATATACTTA
32836479 TATTTATTCATTATAT
1 TATTTATTCATT-TAT
* *
32836495 TATATATACATTTAT
1 TATTTATTCATTTAT
32836510 TAGTTTTATTCATTTAT
1 TA--TTTATTCATTTAT
32836527 TAT
1 TAT
32836530 GTCGAAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
15 6 0.21
16 10 0.34
17 13 0.45
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTTATTCATTTAT
Found at i:32839757 original size:24 final size:24
Alignment explanation
Indices: 32839730--32839781 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
32839720 CTAGTTTTTA
32839730 TCTGCCTTTATAGCATGCTTTTCC
1 TCTGCCTTTATAGCATGCTTTTCC
32839754 TCTGCCTTTATAGCATGCTTTTCC
1 TCTGCCTTTATAGCATGCTTTTCC
32839778 TCTG
1 TCTG
32839782 TCTTGTGGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.12, C:0.29, G:0.13, T:0.46
Consensus pattern (24 bp):
TCTGCCTTTATAGCATGCTTTTCC
Found at i:32841728 original size:21 final size:21
Alignment explanation
Indices: 32841680--32841729 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
32841670 ACTGAGTTGA
32841680 ATTTTATTTTTATTTAATAGAT
1 ATTTTA-TTTTATTTAATAGAT
* *
32841702 AATTTATTTTATTTCAT-GAT
1 ATTTTATTTTATTTAATAGAT
32841722 ACTTTTAT
1 A-TTTTAT
32841730 AATAGTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 4 0.17
21 15 0.62
22 5 0.21
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (21 bp):
ATTTTATTTTATTTAATAGAT
Found at i:32841942 original size:24 final size:26
Alignment explanation
Indices: 32841904--32841956 Score: 65
Period size: 24 Copynumber: 2.1 Consensus size: 26
32841894 TGTTTATATG
*
32841904 CATATCACATCAATAAAC-A-GTTAT
1 CATATCACATAAATAAACAACGTTAT
* *
32841928 CATATCATATAAATATACAACGTTAT
1 CATATCACATAAATAAACAACGTTAT
32841954 CAT
1 CAT
32841957 CTAAAGGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 15 0.62
25 1 0.04
26 8 0.33
ACGTcount: A:0.45, C:0.19, G:0.04, T:0.32
Consensus pattern (26 bp):
CATATCACATAAATAAACAACGTTAT
Found at i:32851168 original size:3 final size:3
Alignment explanation
Indices: 32851162--32851197 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
32851152 AATTTATTAT
32851162 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
32851198 GATGAGAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:32856219 original size:2 final size:2
Alignment explanation
Indices: 32856205--32856255 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
32856195 TTGAAAACAA
*
32856205 AG AG AG A- AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
32856246 AG AG AG AG AG
1 AG AG AG AG AG
32856256 GATGTGGCGG
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:32865925 original size:6 final size:6
Alignment explanation
Indices: 32865914--32865938 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32865904 GTACAACTAT
32865914 AAATAC AAATAC AAATAC AAATAC A
1 AAATAC AAATAC AAATAC AAATAC A
32865939 TATATCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAC
Found at i:32870161 original size:153 final size:155
Alignment explanation
Indices: 32869883--32870194 Score: 470
Period size: 153 Copynumber: 2.0 Consensus size: 155
32869873 GGTCACATGC
* *
32869883 ACAATAAAATATTGTATAGTCAGCTTCAAGGCCTATTTTGATTTTTCCATATATTGTTAGCTAAT
1 ACAATAAAATATTCTATAGTCAGCTTAAAGGCCTATTTTGATTTTTCCATATATTGTTAGCTAAT
* **
32869948 AAAGCTAAGTATCAGATAAAGTTCCATTTAGGGGGGGAAAACAGATTGCAATTAGAACCAATA-C
66 AAAGCCAAGTATCAGATAAAGTTCCATTTAGGGGAAGAAAACAGATTGCAATTAGAACCAATATC
*
32870012 -CTATGTCTAT-AAAAAATTTGCAAA
131 TCTATGTCCATCAAAAAA-TTGCAAA
* *
32870036 ACAATAAAATATTCTATTGTCAGCTTAAAGGCCTATTTTGATTTTTCCATATATTGTTGGCTAAT
1 ACAATAAAATATTCTATAGTCAGCTTAAAGGCCTATTTTGATTTTTCCATATATTGTTAGCTAAT
* * *
32870101 AAAGCCAAGTATCGGATCAAA-TTCCATTTAGGGGAATAAAACCGATTGCAATTAGAACCAATAT
66 AAAGCCAAGTATCAGAT-AAAGTTCCATTTAGGGGAAGAAAACAGATTGCAATTAGAACCAATAT
*
32870165 CTCTATGTCCATCAAAAAATTGCAAT
130 CTCTATGTCCATCAAAAAATTGCAAA
32870191 ACAA
1 ACAA
32870195 CTTGTATCAT
Statistics
Matches: 143, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
153 114 0.80
154 4 0.03
155 19 0.13
156 6 0.04
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32
Consensus pattern (155 bp):
ACAATAAAATATTCTATAGTCAGCTTAAAGGCCTATTTTGATTTTTCCATATATTGTTAGCTAAT
AAAGCCAAGTATCAGATAAAGTTCCATTTAGGGGAAGAAAACAGATTGCAATTAGAACCAATATC
TCTATGTCCATCAAAAAATTGCAAA
Found at i:32872439 original size:18 final size:18
Alignment explanation
Indices: 32872416--32872471 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
32872406 GTAGATGTTC
32872416 TTTTTATTTATTTATATA
1 TTTTTATTTATTTATATA
** *
32872434 TTTTTATAAATTTATAAAA
1 TTTTTATTTATTTAT-ATA
*
32872453 TTTTAATTT-TTTAATATA
1 TTTTTATTTATTT-ATATA
32872471 T
1 T
32872472 GTATTATAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
18 19 0.66
19 10 0.34
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTTATTTATTTATATA
Found at i:32873269 original size:15 final size:15
Alignment explanation
Indices: 32873249--32873278 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32873239 CATTTAACTG
32873249 AATTAACCAAATTAA
1 AATTAACCAAATTAA
*
32873264 AATTAACCGAATTAA
1 AATTAACCAAATTAA
32873279 CTAAAATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (15 bp):
AATTAACCAAATTAA
Found at i:32873269 original size:24 final size:25
Alignment explanation
Indices: 32873242--32873288 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
32873232 TAATATTCAT
* *
32873242 TTAACTGAATTAAC-CAAATTAAAA
1 TTAACCGAATTAACTAAAATTAAAA
32873266 TTAACCGAATTAACTAAAATTAA
1 TTAACCGAATTAACTAAAATTAA
32873289 CTGAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.53, C:0.13, G:0.04, T:0.30
Consensus pattern (25 bp):
TTAACCGAATTAACTAAAATTAAAA
Found at i:32873285 original size:19 final size:20
Alignment explanation
Indices: 32873261--32873299 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
32873251 TTAACCAAAT
32873261 TAAAATTAACCG-AATTAAC
1 TAAAATTAACCGAAATTAAC
*
32873280 TAAAATTAACTGAAATTAAC
1 TAAAATTAACCGAAATTAAC
32873300 CGAATTGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.54, C:0.13, G:0.05, T:0.28
Consensus pattern (20 bp):
TAAAATTAACCGAAATTAAC
Found at i:32877933 original size:15 final size:15
Alignment explanation
Indices: 32877913--32877951 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
32877903 AGACGGGATG
32877913 GGACGGGAA-GGAACA
1 GGACGGGAATGGAA-A
32877928 GGACGGGAATGGAAA
1 GGACGGGAATGGAAA
32877943 GGAACGGGA
1 GG-ACGGGA
32877952 TGAGGACGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.38, C:0.10, G:0.49, T:0.03
Consensus pattern (15 bp):
GGACGGGAATGGAAA
Found at i:32877963 original size:12 final size:12
Alignment explanation
Indices: 32877948--32878008 Score: 63
Period size: 12 Copynumber: 5.2 Consensus size: 12
32877938 GGAAAGGAAC
*
32877948 GGGATGAGGACG
1 GGGACGAGGACG
32877960 GGGAC-AGGGACG
1 GGGACGA-GGACG
*
32877972 GGGACGGGGACG
1 GGGACGAGGACG
*
32877984 GGGACGGGGACG
1 GGGACGAGGACG
*
32877996 GGGATG-GGACG
1 GGGACGAGGACG
32878007 GG
1 GG
32878009 AATGGAACGG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
11 8 0.18
12 36 0.82
ACGTcount: A:0.20, C:0.13, G:0.64, T:0.03
Consensus pattern (12 bp):
GGGACGAGGACG
Found at i:32877969 original size:6 final size:6
Alignment explanation
Indices: 32877955--32878008 Score: 83
Period size: 6 Copynumber: 9.2 Consensus size: 6
32877945 AACGGGATGA
* *
32877955 GGACGG GGACAG GGACGG GGACGG GGACGG GGACGG GGACGG GGA-TG
1 GGACGG GGACGG GGACGG GGACGG GGACGG GGACGG GGACGG GGACGG
32878002 GGACGG G
1 GGACGG G
32878009 AATGGAACGG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
5 4 0.09
6 39 0.91
ACGTcount: A:0.19, C:0.15, G:0.65, T:0.02
Consensus pattern (6 bp):
GGACGG
Found at i:32884834 original size:30 final size:31
Alignment explanation
Indices: 32884800--32884863 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
32884790 AATGTTCTTT
*
32884800 AAATATAATAATCA-TTAAAGTATATTAAAA
1 AAATATAATAACCATTTAAAGTATATTAAAA
32884830 AAATATAATAACCATTTAAAGTATATTAAAA
1 AAATATAATAACCATTTAAAGTATATTAAAA
32884861 AAA
1 AAA
32884864 ATCATTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 13 0.41
31 19 0.59
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (31 bp):
AAATATAATAACCATTTAAAGTATATTAAAA
Done.