Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 122 of 135
Found at i:36940464 original size:31 final size:31
Alignment explanation
Indices: 36940429--36940493 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
36940419 AACAACCCAA
* * * *
36940429 TGACTTAAACAAAAATTTTTGAATAGTTTAG
1 TGACTTAAACAAAAAATTTCGAATAATTCAG
*
36940460 TGACTTAAATAAAAAATTTCGAATAATTCAG
1 TGACTTAAACAAAAAATTTCGAATAATTCAG
36940491 TGA
1 TGA
36940494 TCAAATAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (31 bp):
TGACTTAAACAAAAAATTTCGAATAATTCAG
Found at i:36940991 original size:13 final size:13
Alignment explanation
Indices: 36940973--36940999 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36940963 AAATTTATAT
36940973 TACCCAAGCCCAA
1 TACCCAAGCCCAA
36940986 TACCCAAGCCCAA
1 TACCCAAGCCCAA
36940999 T
1 T
36941000 TTACTATACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.44, G:0.07, T:0.11
Consensus pattern (13 bp):
TACCCAAGCCCAA
Found at i:36941539 original size:18 final size:19
Alignment explanation
Indices: 36941516--36941551 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36941506 GTTGTGTTAT
*
36941516 TGTTG-TTACTTGGATTTA
1 TGTTGTTTACTTGAATTTA
36941534 TGTTGTTTACTTGAATTT
1 TGTTGTTTACTTGAATTT
36941552 TTACTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.17, C:0.06, G:0.19, T:0.58
Consensus pattern (19 bp):
TGTTGTTTACTTGAATTTA
Found at i:36942195 original size:18 final size:18
Alignment explanation
Indices: 36942153--36942201 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 18
36942143 TTATTGAAAG
*
36942153 ATATTTTA-ATTATTAATA
1 ATATTTTATAATA-TAATA
36942171 ATA--TTATAATATAATA
1 ATATTTTATAATATAATA
36942187 ATATTTTATAA-ATAA
1 ATATTTTATAATATAA
36942202 AAAAAAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
16 11 0.41
17 7 0.26
18 9 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATTTTATAATATAATA
Found at i:36944741 original size:31 final size:31
Alignment explanation
Indices: 36944703--36944792 Score: 123
Period size: 29 Copynumber: 3.0 Consensus size: 31
36944693 GCCTGAACCG
36944703 AATTATAGAAGCCAAACTCGAGCCCGACCCA
1 AATTATAGAAGCCAAACTCGAGCCCGACCCA
* *
36944734 AATTATAGAAGCCAAA--CGAGCTCGACCCG
1 AATTATAGAAGCCAAACTCGAGCCCGACCCA
*
36944763 AATTGTAGAAGCCAAACAT-GAGCCCGACCC
1 AATTATAGAAGCCAAAC-TCGAGCCCGACCC
36944793 TTACCCATAT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
29 26 0.50
31 26 0.50
ACGTcount: A:0.38, C:0.30, G:0.19, T:0.13
Consensus pattern (31 bp):
AATTATAGAAGCCAAACTCGAGCCCGACCCA
Found at i:36944766 original size:29 final size:29
Alignment explanation
Indices: 36944700--36944792 Score: 123
Period size: 31 Copynumber: 3.1 Consensus size: 29
36944690 CAAGCCTGAA
36944700 CCGAATTATAGAAGCCAAACTCGAGCCCGAC
1 CCGAATTATAGAAGCCAAA--CGAGCCCGAC
* *
36944731 CCAAATTATAGAAGCCAAACGAGCTCGAC
1 CCGAATTATAGAAGCCAAACGAGCCCGAC
*
36944760 CCGAATTGTAGAAGCCAAACATGAGCCCGAC
1 CCGAATTATAGAAGCCAAAC--GAGCCCGAC
36944791 CC
1 CC
36944793 TTACCCATAT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
29 27 0.49
31 28 0.51
ACGTcount: A:0.37, C:0.31, G:0.19, T:0.13
Consensus pattern (29 bp):
CCGAATTATAGAAGCCAAACGAGCCCGAC
Found at i:36946463 original size:23 final size:22
Alignment explanation
Indices: 36946424--36946474 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
36946414 AAAACTAAAA
36946424 AAAAAAAAAACTTAAAATT-TT
1 AAAAAAAAAACTTAAAATTGTT
*
36946445 GAAAAAAAAATCTTAAAAATTGTT
1 -AAAAAAAAAACTT-AAAATTGTT
36946469 AAAAAA
1 AAAAAA
36946475 TATAAGAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 12 0.46
23 12 0.46
24 2 0.08
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (22 bp):
AAAAAAAAAACTTAAAATTGTT
Found at i:36946540 original size:28 final size:28
Alignment explanation
Indices: 36946509--36946562 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
36946499 ACTTCAATAT
*
36946509 ATATATAAATTGAAAATAATAATAACGA
1 ATATATAAATTGAAAATAAAAATAACGA
36946537 ATATATAAATTGAAAATAAAAATAAC
1 ATATATAAATTGAAAATAAAAATAAC
36946563 AAATTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.28
Consensus pattern (28 bp):
ATATATAAATTGAAAATAAAAATAACGA
Found at i:36950363 original size:30 final size:29
Alignment explanation
Indices: 36950307--36950364 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
36950297 TATTTTATAA
*
36950307 TTTTAAAAATTTAAAATATTTAATTTAAT
1 TTTTAAAAATTTAAAATAATTAATTTAAT
36950336 TTTTAAAAATTATAAAATAAATT-ATTTAA
1 TTTTAAAAATT-TAAAAT-AATTAATTTAA
36950365 ATTATAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 11 0.42
30 12 0.46
31 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TTTTAAAAATTTAAAATAATTAATTTAAT
Found at i:36950793 original size:1 final size:1
Alignment explanation
Indices: 36950787--36950818 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
36950777 AATGTGAAGC
*
36950787 AAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
36950819 GGTTTTAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:36950986 original size:17 final size:17
Alignment explanation
Indices: 36950961--36950993 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36950951 TACTTCCACA
*
36950961 ATTACTCAAAGAAAACG
1 ATTAATCAAAGAAAACG
36950978 ATTAATCAAAGAAAAC
1 ATTAATCAAAGAAAAC
36950994 CAATGACTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.15, G:0.09, T:0.18
Consensus pattern (17 bp):
ATTAATCAAAGAAAACG
Found at i:36955377 original size:16 final size:16
Alignment explanation
Indices: 36955356--36955398 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
36955346 ATGGAGCATT
36955356 AAGCAAATACTATGTG
1 AAGCAAATACTATGTG
36955372 AAGCAAATACTATGTG
1 AAGCAAATACTATGTG
36955388 AAGCAAATACT
1 AAGCAAATACT
36955399 CTTAAATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.23
Consensus pattern (16 bp):
AAGCAAATACTATGTG
Found at i:36957256 original size:48 final size:48
Alignment explanation
Indices: 36957175--36957277 Score: 143
Period size: 48 Copynumber: 2.1 Consensus size: 48
36957165 AGGCTTCCTT
* * * * *
36957175 CCACCACCACCTCCAGTTGGTTATACTCGTACTCATCATTCGCCCTCA
1 CCACCACCACCGCCAGTTAGATATAATCATACTCATCATTCGCCCTCA
*
36957223 CCACCACCGCCGCCAGTTAGATATAATCATACTCATCATTCGCCCTCA
1 CCACCACCACCGCCAGTTAGATATAATCATACTCATCATTCGCCCTCA
*
36957271 CCGCCAC
1 CCACCAC
36957278 AACCAGGCTA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.23, C:0.43, G:0.11, T:0.23
Consensus pattern (48 bp):
CCACCACCACCGCCAGTTAGATATAATCATACTCATCATTCGCCCTCA
Found at i:36958284 original size:12 final size:12
Alignment explanation
Indices: 36958266--36958299 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
36958256 GATTGAATTT
36958266 ATTTTTTT-ATG
1 ATTTTTTTAATG
36958277 ATTTTTTTAATG
1 ATTTTTTTAATG
*
36958289 ATTTATTTAAT
1 ATTTTTTTAAT
36958300 CAATTTGATC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 8 0.38
12 13 0.62
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (12 bp):
ATTTTTTTAATG
Found at i:36961473 original size:33 final size:30
Alignment explanation
Indices: 36961406--36961463 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
36961396 ATTTTTAGGT
36961406 AATTATTATTTTAAATATATAAAAATATAA
1 AATTATTATTTTAAATATATAAAAATATAA
36961436 AATTATATATTTATAAA-ATATAAAAATA
1 AATTAT-TATTT-TAAATATATAAAAATA
36961464 AATACAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 6 0.23
31 16 0.62
32 4 0.15
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (30 bp):
AATTATTATTTTAAATATATAAAAATATAA
Found at i:36961660 original size:23 final size:23
Alignment explanation
Indices: 36961631--36961680 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
36961621 TTTATTAATT
* *
36961631 TATATATTTTAATTTATGAAAATAA
1 TATAT-TTTTAAATT-TCAAAATAA
36961656 TATATTTTTAAATTTCAAAATAA
1 TATATTTTTAAATTTCAAAATAA
36961679 TA
1 TA
36961681 ATATAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 10 0.43
24 8 0.35
25 5 0.22
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TATATTTTTAAATTTCAAAATAA
Found at i:36961664 original size:24 final size:24
Alignment explanation
Indices: 36961631--36961685 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
36961621 TTTATTAATT
* *
36961631 TATATATTTTAATTTATGAAAATAA
1 TATATATTTTAAATT-TCAAAATAA
36961656 TATAT-TTTTAAATTTCAAAATAA
1 TATATATTTTAAATTTCAAAATAA
36961679 TAATATA
1 T-ATATA
36961686 AATAACCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 9 0.35
24 12 0.46
25 5 0.19
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (24 bp):
TATATATTTTAAATTTCAAAATAA
Found at i:36966615 original size:9 final size:8
Alignment explanation
Indices: 36966577--36966619 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
36966567 TAAATAAAAA
36966577 TAAAAATT
1 TAAAAATT
* *
36966585 TTAAATTT
1 TAAAAATT
*
36966593 TAAATATGT
1 TAAAAAT-T
36966602 TAAAAATT
1 TAAAAATT
36966610 TAAAAATT
1 TAAAAATT
36966618 TA
1 TA
36966620 GACATATTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (8 bp):
TAAAAATT
Found at i:36969508 original size:17 final size:17
Alignment explanation
Indices: 36969486--36969520 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
36969476 TTGGTTGCTA
36969486 TTTTTTACTGTTTTGGT
1 TTTTTTACTGTTTTGGT
36969503 TTTTTTACTGTTTTGGT
1 TTTTTTACTGTTTTGGT
36969520 T
1 T
36969521 GCTGTTTTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.06, C:0.06, G:0.17, T:0.71
Consensus pattern (17 bp):
TTTTTTACTGTTTTGGT
Found at i:36969545 original size:39 final size:39
Alignment explanation
Indices: 36969463--36969554 Score: 100
Period size: 39 Copynumber: 2.4 Consensus size: 39
36969453 GTTTTGGTGC
* * *
36969463 TTTTTTTGCTGTTTTGGTTGCTATTTTTTACTGTTTTGG
1 TTTTTTTACTGTTTTGGTTGCTATTTTGTACTATTTTGG
* *
36969502 TTTTTTTACTGTTTTGGTTGCTGTTTTGGTGCTA-TTT--
1 TTTTTTTACTGTTTTGGTTGCTATTTT-GTACTATTTTGG
*
36969539 TTTTTTTACTATTTTG
1 TTTTTTTACTGTTTTG
36969555 ATGCTGTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
37 15 0.33
39 28 0.61
40 3 0.07
ACGTcount: A:0.07, C:0.08, G:0.18, T:0.67
Consensus pattern (39 bp):
TTTTTTTACTGTTTTGGTTGCTATTTTGTACTATTTTGG
Found at i:36969553 original size:25 final size:23
Alignment explanation
Indices: 36969525--36969612 Score: 68
Period size: 24 Copynumber: 3.7 Consensus size: 23
36969515 TTGGTTGCTG
* *
36969525 TTTTGGTGCTATTTTTTTTTTACT
1 TTTTGATGCTATTTTTTTGTTA-T
*
36969549 ATTTTGATGCTGTTTTTATTGTTAT
1 -TTTTGATGCTATTTTT-TTGTTAT
* * *
36969574 TTTTGTTACTATTTTTTCTATTAT
1 TTTTGATGCTATTTTTT-TGTTAT
* *
36969598 TTTTGCTGCTGTTTT
1 TTTTGATGCTATTTT
36969613 GGTTATTATT
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
23 1 0.02
24 30 0.59
25 15 0.29
26 5 0.10
ACGTcount: A:0.11, C:0.08, G:0.12, T:0.68
Consensus pattern (23 bp):
TTTTGATGCTATTTTTTTGTTAT
Found at i:36969577 original size:36 final size:36
Alignment explanation
Indices: 36969502--36969588 Score: 88
Period size: 37 Copynumber: 2.4 Consensus size: 36
36969492 ACTGTTTTGG
* * *
36969502 TTTTTTTACTGTTTTGGTTGCTGTTTTGGTGCTATTT
1 TTTTTTTACTATTTTGGATGCTGTTTTAGTGCTA-TT
* *
36969539 TTTTTTTACTATTTT-GATGCTGTTTTTATTGTTA-T
1 TTTTTTTACTATTTTGGATGCTG-TTTTAGTGCTATT
*
36969574 TTTTGTTACTATTTT
1 TTTTTTTACTATTTT
36969589 TTCTATTATT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
35 15 0.35
36 6 0.14
37 22 0.51
ACGTcount: A:0.10, C:0.07, G:0.15, T:0.68
Consensus pattern (36 bp):
TTTTTTTACTATTTTGGATGCTGTTTTAGTGCTATT
Found at i:36971000 original size:21 final size:23
Alignment explanation
Indices: 36970962--36971003 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
36970952 AATATCATAT
36970962 TTTAATAAAACTAATATTTATGG
1 TTTAATAAAACTAATATTTATGG
*
36970985 TTTAA-AAAA-TATTATTTAT
1 TTTAATAAAACTAATATTTAT
36971004 TATTTAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 4 0.22
23 5 0.28
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (23 bp):
TTTAATAAAACTAATATTTATGG
Found at i:36971009 original size:21 final size:23
Alignment explanation
Indices: 36970962--36971010 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
36970952 AATATCATAT
*
36970962 TTTAATAAAACTAATATTTATGG
1 TTTAATAAAACTAATATTTATGA
* *
36970985 TTTAA-AAAA-TATTATTTATTA
1 TTTAATAAAACTAATATTTATGA
36971006 TTTAA
1 TTTAA
36971011 GTATGTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 14 0.61
22 4 0.17
23 5 0.22
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (23 bp):
TTTAATAAAACTAATATTTATGA
Found at i:36971221 original size:10 final size:10
Alignment explanation
Indices: 36971168--36971243 Score: 61
Period size: 10 Copynumber: 7.6 Consensus size: 10
36971158 CACATAAACA
36971168 TTTAATTAATT
1 TTTAA-TAATT
36971179 TTTAA-AATAT
1 TTTAATAAT-T
36971189 TTTAA-AATAT
1 TTTAATAAT-T
**
36971199 TAAAATATATT
1 TTTAATA-ATT
36971210 TTT-ATAATT
1 TTTAATAATT
36971219 TTTAATAA-T
1 TTTAATAATT
*
36971228 TTTAATGATT
1 TTTAATAATT
36971238 TTTAAT
1 TTTAAT
36971244 TTTTAAAATA
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
9 17 0.31
10 28 0.51
11 8 0.15
12 2 0.04
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (10 bp):
TTTAATAATT
Found at i:36971238 original size:19 final size:20
Alignment explanation
Indices: 36971168--36971243 Score: 75
Period size: 19 Copynumber: 3.8 Consensus size: 20
36971158 CACATAAACA
*
36971168 TTTAATTAATTTTTAAAATAT
1 TTTAA-TAATTTTTAATATAT
**
36971189 TTTAA-AATATTAAAATATAT
1 TTTAATAAT-TTTTAATATAT
*
36971209 TTTTATAATTTTTAATA-AT
1 TTTAATAATTTTTAATATAT
*
36971228 TTTAATGATTTTTAAT
1 TTTAATAATTTTTAAT
36971244 TTTTAAAATA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
19 19 0.42
20 18 0.40
21 8 0.18
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (20 bp):
TTTAATAATTTTTAATATAT
Found at i:36971264 original size:26 final size:24
Alignment explanation
Indices: 36971203--36971271 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 24
36971193 AAATATTAAA
36971203 ATATATTTTTATAATTTTTAATAATT
1 ATATA-TTTT-TAATTTTTAATAATT
*
36971229 TTAATGATTTTTAATTTTTAAAATAATT
1 AT-AT-ATTTTTAATTTTT--AATAATT
36971257 ATATATTTTTAATTT
1 ATATATTTTTAATTT
36971272 AATTAAATGC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
26 20 0.54
27 8 0.22
28 9 0.24
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (24 bp):
ATATATTTTTAATTTTTAATAATT
Found at i:36974177 original size:58 final size:60
Alignment explanation
Indices: 36974045--36974520 Score: 325
Period size: 59 Copynumber: 8.0 Consensus size: 60
36974035 TTGGCCATAC
* * * * * ** *
36974045 CTTTTTGTCAGATAAAAAATTCAATTTTTTTTGTGTTGATTATGCCATGGCTAACACTC-
1 CTTTTTATCAGATAAAAAATTCAAATTTTTTTGTGTTGGTCATGCAATGGCCGACACCCT
* *
36974104 CTATTTATCAGATAAAAAA-TCAAATTTTTTTGTGTTGGTCATGCAATGTCCGACACCCT
1 CTTTTTATCAGATAAAAAATTCAAATTTTTTTGTGTTGGTCATGCAATGGCCGACACCCT
* * ** *
36974163 CTTTTT-TCAAATAAAAAAATTTTAAATTTTTTTTGTGTTGACCATTG-TATGGCCGACACCC-
1 CTTTTTATCAGAT-AAAAAA-TTCAAA-TTTTTTTGTGTTGGTCA-TGCAATGGCCGACACCCT
* * ** * *
36974224 CTTTTTTATCTGAATAAAAAA-TCAAACTTTTGGGTGTTGGTCATGCCATGGCCGACACTCT
1 C-TTTTTATCAG-ATAAAAAATTCAAATTTTTTTGTGTTGGTCATGCAATGGCCGACACCCT
* * * * ** **
36974285 CTTTTTGTCAGATAAAAAATTCGAATTTTTTTTTGTATTGGTCATGCCATGGTTGACACTTT
1 CTTTTTATCAGATAAAAAATTC-AA-ATTTTTTTGTGTTGGTCATGCAATGGCCGACACCCT
** * *
36974347 CTTTTTTATTTGGA-AAAAAA-TC-AATTTTTTTGTGTT-GACTGTGCAATGGCCGACACCC-
1 C-TTTTTA-TCAGATAAAAAATTCAAATTTTTTTGTGTTGGTC-ATGCAATGGCCGACACCCT
* * ** * **
36974405 CCTTTTGTCAGATAAAAAATTCAAA-TTTTTTGTGTTGACCAT-TACATGATCGACACCC-
1 CTTTTTATCAGATAAAAAATTCAAATTTTTTTGTGTTGGTCATGCA-ATGGCCGACACCCT
* * * * *
36974463 CTTTTTTATCTGGTAAAAAA-TCAAATTTTTTTGTGTTGGACATACAATGACCGACACC
1 C-TTTTTATCAGATAAAAAATTCAAATTTTTTTGTGTTGGTCATGCAATGGCCGACACC
36974521 AACTTTCTCT
Statistics
Matches: 325, Mismatches: 67, Indels: 50
0.74 0.15 0.11
Matches are distributed among these distances:
56 3 0.01
57 11 0.03
58 70 0.22
59 104 0.32
60 36 0.11
61 12 0.04
62 63 0.19
63 21 0.06
64 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (60 bp):
CTTTTTATCAGATAAAAAATTCAAATTTTTTTGTGTTGGTCATGCAATGGCCGACACCCT
Found at i:36974180 original size:59 final size:59
Alignment explanation
Indices: 36974045--36974520 Score: 292
Period size: 58 Copynumber: 8.0 Consensus size: 59
36974035 TTGGCCATAC
* * * * * **
36974045 CTTTTTGTCAGATAAAAAATTCAATTTTTTTTGTGTTGATTATGCCATGGCTAACACTCCT
1 CTTTTT-TCAGATAAAAAAATCAAATTTTTTTGTGTTGGTCATGCAATGGCCGACAC-CCT
* * *
36974106 -ATTTATCAGAT-AAAAAATCAAATTTTTTTGTGTTGGTCATGCAATGTCCGACACCCT
1 CTTTTTTCAGATAAAAAAATCAAATTTTTTTGTGTTGGTCATGCAATGGCCGACACCCT
* * ** *
36974163 CTTTTTTCAAATAAAAAAATTTTAAATTTTTTTTGTGTTGACCATTG-TATGGCCGACACCC-
1 CTTTTTTCAGATAAAAAAA--TCAAA-TTTTTTTGTGTTGGTCA-TGCAATGGCCGACACCCT
* * ** * *
36974224 CTTTTTTATCTGA-ATAAAAAATCAAACTTTTGGGTGTTGGTCATGCCATGGCCGACACTCT
1 C-TTTTT-TCAGATA-AAAAAATCAAATTTTTTTGTGTTGGTCATGCAATGGCCGACACCCT
* * * * ** **
36974285 CTTTTTGTCAGATAAAAAATTCGAATTTTTTTTTGTATTGGTCATGCCATGGTTGACACTTT
1 CTTTTT-TCAGATAAAAAAATC-AA-ATTTTTTTGTGTTGGTCATGCAATGGCCGACACCCT
** * * *
36974347 CTTTTTT-ATTTGGAAAAAAATC-AATTTTTTTGTGTT-GACTGTGCAATGGCCGACACCCC
1 CTTTTTTCAGAT--AAAAAAATCAAATTTTTTTGTGTTGGTC-ATGCAATGGCCGACACCCT
* * ** * **
36974406 CTTTTGTCAGATAAAAAATTCAAA-TTTTTTGTGTTGACCAT-TACATGATCGACACCC-
1 CTTTTTTCAGATAAAAAAATCAAATTTTTTTGTGTTGGTCATGCA-ATGGCCGACACCCT
* * * * *
36974463 CTTTTTTATCTGGT-AAAAAATCAAATTTTTTTGTGTTGGACATACAATGACCGACACC
1 C-TTTTT-TCAGATAAAAAAATCAAATTTTTTTGTGTTGGTCATGCAATGGCCGACACC
36974521 AACTTTCTCT
Statistics
Matches: 320, Mismatches: 70, Indels: 52
0.72 0.16 0.12
Matches are distributed among these distances:
57 5 0.02
58 90 0.28
59 76 0.24
60 49 0.15
61 14 0.04
62 75 0.23
63 11 0.03
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (59 bp):
CTTTTTTCAGATAAAAAAATCAAATTTTTTTGTGTTGGTCATGCAATGGCCGACACCCT
Found at i:36974264 original size:122 final size:120
Alignment explanation
Indices: 36974045--36974520 Score: 456
Period size: 122 Copynumber: 4.0 Consensus size: 120
36974035 TTGGCCATAC
** * *
36974045 CTTTTTGTCAGATAAAAAA-TTC-AATTTTTTTTGTGTTGATTA-TGCCATGG-CTAACACTCC-
1 CTTTTT-TCAGATAAAAAATTTCAAATTTTTTTTGTGTTGACCATTG-CATGGTC-GACACCCCT
* * * *
36974105 TATTTATCAGATAAAAAATCAAATTTTTTTGTGTTGGTCATGCAATGTCCGACACCCT
63 TTTTTATCTGATAAAAAATCAAATTTTTTTGTGTTGGACATGCAATGGCCGACACCCT
* * * *
36974163 CTTTTTTCAAATAAAAAAATTTTAAATTTTTTTTGTGTTGACCATTGTATGGCCGACACCCCTTT
1 CTTTTTTCAGAT-AAAAAATTTCAAATTTTTTTTGTGTTGACCATTGCATGGTCGACACCCCTTT
* ** * * *
36974228 TTTATCTGAATAAAAAATCAAACTTTTGGGTGTTGGTCATGCCATGGCCGACACTCT
65 TTTATCTG-ATAAAAAATCAAATTTTTTTGTGTTGGACATGCAATGGCCGACACCCT
* * ** * **
36974285 CTTTTTGTCAGATAAAAAA-TTCGAATTTTTTTTTGTATTGGTCA-TGCCATGGTTGACACTTTC
1 CTTTTT-TCAGATAAAAAATTTC-AAATTTTTTTTGTGTTGACCATTG-CATGGTCGACAC-CCC
* * *
36974348 TTTTTTATTTGGA-AAAAAATC-AATTTTTTTGTGTT-GACTGTGCAATGGCCGACACCCC
62 TTTTTTATCT-GATAAAAAATCAAATTTTTTTGTGTTGGAC-ATGCAATGGCCGACACCCT
* * *
36974406 CTTTTGTCAGATAAAAAA-TTCAAA--TTTTTTGTGTTGACCATTACATGATCGACACCCCTTTT
1 CTTTTTTCAGATAAAAAATTTCAAATTTTTTTTGTGTTGACCATTGCATGGTCGACACCCCTTTT
* * *
36974468 TTATCTGGTAAAAAATCAAATTTTTTTGTGTTGGACATACAATGACCGACACC
66 TTATCTGATAAAAAATCAAATTTTTTTGTGTTGGACATGCAATGGCCGACACC
36974521 AACTTTCTCT
Statistics
Matches: 291, Mismatches: 50, Indels: 35
0.77 0.13 0.09
Matches are distributed among these distances:
115 1 0.00
116 18 0.06
117 56 0.19
118 16 0.05
119 4 0.01
120 45 0.15
121 46 0.16
122 88 0.30
123 16 0.05
124 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (120 bp):
CTTTTTTCAGATAAAAAATTTCAAATTTTTTTTGTGTTGACCATTGCATGGTCGACACCCCTTTT
TTATCTGATAAAAAATCAAATTTTTTTGTGTTGGACATGCAATGGCCGACACCCT
Found at i:36977286 original size:19 final size:19
Alignment explanation
Indices: 36977247--36977291 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
36977237 TTTTTATAAT
*
36977247 ATTTTTTTCTATTTTCGAA
1 ATTTTTTTATATTTTCGAA
36977266 ATGTTTTTTATATTTTC-AA
1 AT-TTTTTTATATTTTCGAA
36977285 ATTTTTT
1 ATTTTTT
36977292 AAAAGATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 5 0.21
19 6 0.25
20 13 0.54
ACGTcount: A:0.22, C:0.07, G:0.04, T:0.67
Consensus pattern (19 bp):
ATTTTTTTATATTTTCGAA
Found at i:36979065 original size:18 final size:17
Alignment explanation
Indices: 36979042--36979077 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
36979032 TGAATTTCTA
*
36979042 TCCAATTTATATCTTAAT
1 TCCAATTTA-ATCCTAAT
36979060 TCCAATTTAATCCTAAT
1 TCCAATTTAATCCTAAT
36979077 T
1 T
36979078 AATTTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.47
Consensus pattern (17 bp):
TCCAATTTAATCCTAAT
Found at i:36979542 original size:20 final size:20
Alignment explanation
Indices: 36979503--36979543 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
36979493 TGAGCCTCTG
* *
36979503 TTCTTTCTTCTTTTGCTTCT
1 TTCTTTATTCTTTTACTTCT
*
36979523 TTCTTTATTCTTTTATTTCT
1 TTCTTTATTCTTTTACTTCT
36979543 T
1 T
36979544 ATATATATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.05, C:0.20, G:0.02, T:0.73
Consensus pattern (20 bp):
TTCTTTATTCTTTTACTTCT
Found at i:36980502 original size:30 final size:30
Alignment explanation
Indices: 36980467--36980564 Score: 108
Period size: 30 Copynumber: 3.3 Consensus size: 30
36980457 TCCGTTTACT
* * *
36980467 TTTTAAATTTAATTTGTAATTTCATTTTTA
1 TTTTAAATTTAATTTCTAATTTCATGTATA
* * *
36980497 TTTTAAATTTATTTTTTAATTTCCTGTATA
1 TTTTAAATTTAATTTCTAATTTCATGTATA
*
36980527 TTTT-AATTTAAATTTCTAATTTCCTGTATA
1 TTTTAAATTT-AATTTCTAATTTCATGTATA
*
36980557 TTCTAAAT
1 TTTTAAAT
36980565 ATTATTTTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
29 5 0.09
30 50 0.86
31 3 0.05
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (30 bp):
TTTTAAATTTAATTTCTAATTTCATGTATA
Found at i:36981488 original size:60 final size:57
Alignment explanation
Indices: 36981363--36982227 Score: 472
Period size: 59 Copynumber: 14.6 Consensus size: 57
36981353 AGAGAAAGTT
* * * * *
36981363 GGTGTCGGCCATTACATGGCCAACACCAAAAAATATAATTTTTTTATCAAATAAATAGG
1 GGTGTCGGCCA-TGCATGACCAACACCAAAAAAT-TAAATTTTTTATCAGATAAAAAGG
* * *
36981422 GGTGTCGGCCATAGCATGACTAACACCATAAAAATTAAATTTTTTATCTGACAAAAAGG
1 GGTGTCGGCCAT-GCATGACCAACACCA-AAAAATTAAATTTTTTATCAGATAAAAAGG
* * ** *
36981481 GGATGTCGGCCATGTCATGGCCAACACCCAAAAATTTGATTTTTTATTCAGATAAAAATG
1 GG-TGTCGGCCATG-CATGACCAACACCAAAAAATTAAATTTTTTA-TCAGATAAAAAGG
* * * * * *
36981541 GATGTCGGCCATGTAATGGCCAACACCAAAAAAATTTAAATTTTTTTTACCAAATAAAAAAAG
1 GGTGTCGGCCATG-CATGACCAACACC-AAAAAA-TTAAA--TTTTTTATCAGAT-AAAAAGG
* * * *
36981604 GGTGTCGGCAATGAAATGACCAACACC-AAAAATTAGAATTTTTTATCTGACAAAAAAGG
1 GGTGTCGGCCATG-CATGACCAACACCAAAAAATTA-AATTTTTTATCAGA-TAAAAAGG
* * * * * * * * *
36981663 GGTGTCGACCATTGCATGGCCGATACAAAAAAAATAATTTTTTTACCAGTTAAAAAGGG
1 GGTGTCGGCCA-TGCATGACCAACACCAAAAAATTAAATTTTTTATCAGATAAAAA-GG
* * * * * * *
36981722 GGTGTCGACCATGGCATGACAAACACAAAAAAAATTCAAATTTTTAATCTGACAAATAGGG
1 GGTGTCGGCCAT-GCATGACCAACAC-CAAAAAATT-AAATTTTTTATCAGATAAA-AAGG
* ** **
36981783 GGTGTCGGTCATGGCATGGTCAACACCAAAAAATTTGATTTTTTATTCAGATAAAAAGG
1 GGTGTCGGCCAT-GCATGACCAACACCAAAAAATTAAATTTTTTA-TCAGATAAAAAGG
* * * ** *
36981842 GGTGTCGACCATGCAATGATCAACA-C-TAAAA--AAA-TTTGAACCAGATAAAAAATGG
1 GGTGTCGGCCATGC-ATGACCAACACCAAAAAATTAAATTTTTTATCAGAT-AAAAA-GG
* * * * * ** *
36981897 GATGTCGGCCATGTAATGGCGC-ACACCAAAAATTTGAATTTTTTATTTGACAAAAAGAG
1 GGTGTCGGCCATG-CATGAC-CAACACCAAAAAATTAAATTTTTTATCAGATAAAAAG-G
** * ** ** *
36981956 GGTGTCGATCATTGCATAATAAACATAAAAAAATT-AATTTTTTACCAGATAAAAAAGAG
1 GGTGTCGGCCA-TGCATGACCAACACCAAAAAATTAAATTTTTTATCAGAT-AAAAAG-G
* * ** *
36982015 GATGTCGGCCATGGCATGACCAACA--AAAAAATAAAAAATTTTATCTGATAAAAAGGG
1 GGTGTCGGCCAT-GCATGACCAACACCAAAAAATTAAATTTTTTATCAGATAAAAA-GG
* * ** * *
36982072 GGTGTCGGCCATGACATAACCAACACAAAAAAAATTTGATTTTTTATTTAGATAAAAAAG
1 GGTGTCGGCCATG-CATGACCAACAC-CAAAAAATTAAATTTTTTA-TCAGATAAAAAGG
* * * * * *
36982132 AGTGTCGGTCATGCAATGGCCTACACCAAAAAAATTTGAAATTTTTTATCTGAAAAAAAAGG
1 GGTGTCGGCCATGC-ATGACCAACACC-AAAAAA-TT-AAATTTTTTATCAG-ATAAAAAGG
** * * *
36982194 GGTGTCAACTATTGCATGGCCAACACAAAAAAAT
1 GGTGTCGGCCA-TGCATGACCAACACCAAAAAAT
36982228 GATTTTTTTT
Statistics
Matches: 610, Mismatches: 148, Indels: 95
0.72 0.17 0.11
Matches are distributed among these distances:
53 5 0.01
54 9 0.01
55 20 0.03
56 3 0.00
57 41 0.07
58 35 0.06
59 231 0.38
60 126 0.21
61 65 0.11
62 36 0.06
63 39 0.06
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (57 bp):
GGTGTCGGCCATGCATGACCAACACCAAAAAATTAAATTTTTTATCAGATAAAAAGG
Found at i:36981514 original size:119 final size:120
Alignment explanation
Indices: 36981365--36982235 Score: 334
Period size: 119 Copynumber: 7.3 Consensus size: 120
36981355 AGAAAGTTGG
* *
36981365 TGTCGGCCATTACATGGCCAACACCAAAAAATATAATTTTTT-TATCAAATAAATAGGGGTGTCG
1 TGTCGGCCATTACATGGCCAACACCAAAAAATATAATTTTTTAT-TCAAATAAAAAGGGATGTCG
* * *
36981429 GCCATAG-CATGACTAACACCATAAAAA-TTAAATTTTTTATCTGACAAAAAGGGGA
65 GCCAT-GTAATGACCAACACCAAAAAAATTTAAATTTTTTATCTGACAAAAAGGGGA
* * * * *
36981484 TGTCGGCCATGT-CATGGCCAACACCCAAAAATTTGATTTTTTATTCAGATAAAAATGGATGTCG
1 TGTCGGCCAT-TACATGGCCAACACCAAAAAATATAATTTTTTATTCAAATAAAAAGGGATGTCG
* * ** * *
36981548 GCCATGTAATGGCCAACACCAAAAAAATTTAAATTTTTTTTACCAAATAAAAAAAGGG-
65 GCCATGTAATGACCAACACCAAAAAAATTTAAA--TTTTTTATCTGA-CAAAAAGGGGA
* * * * * * * * *
36981606 TGTCGGCAATGAAATGACCAACACCAAAAATTAGAATTTTTTATCTGACA-AAAAAGGGGTGTCG
1 TGTCGGCCATTACATGGCCAACACCAAAAAATATAATTTTTTAT-TCAAATAAAAAGGGATGTCG
* * * * * * * * * ** *
36981670 ACCAT-TGCATGGCCGATA-CAAAAAAA-ATAATTTTTTTACCAGTTAAAAAGGGGG
65 GCCATGT-AATGACCAACACCAAAAAAATTTAAATTTTTTATCTGACAAAAAGGGGA
* ** * * * * * ** * * *
36981724 TGTCGACCATGGCATGACAAACA-CAAAAAAAATTCAAATTTTTAATCTGACAAATAGGGGGTGT
1 TGTCGGCCATTACATGGCCAACACCAAAAAATA-T-AATTTTTTATTCAAATAAA-AAGGGATGT
* ** ** * * *
36981788 CGGTCATGGCATGGTCAACACC-AAAAAATTT-GATTTTTTATTCAGATAAAAAGGGG-
63 CGGCCATGTAATGACCAACACCAAAAAAATTTAAATTTTTTA-TCTGACAAAAAGGGGA
* * ** * * ** *
36981844 TGTCGACCA-TGCAATGATCAACA-C-TAAAA-A-AA--TTTGAACCAGATAAAAAATGGGATGT
1 TGTCGGCCATTAC-ATGGCCAACACCAAAAAATATAATTTTTTATTCAAAT-AAAAA-GGGATGT
* * *
36981902 CGGCCATGTAATGGCGC-ACACC--AAAAATTTGAATTTTTTATTTGACAAAAAGAGGG-
63 CGGCCATGTAATGAC-CAACACCAAAAAAATTTAAATTTTTTATCTGACAAAAAG-GGGA
** * **** ** * *
36981958 TGTCGATCATTGCATAATAAACATAAAAAAAT-TAATTTTTTA-CCAGATAAAAAAGAGGATGTC
1 TGTCGGCCATTACATGGCCAACACCAAAAAATATAATTTTTTATTCAAAT-AAAAAG-GGATGTC
** * ** * *
36982021 GGCCATGGCATGACC-A-A-CAAAAAAA-TAAAAAATTTTATCTGATAAAAAGGGGG
64 GGCCATGTAATGACCAACACCAAAAAAATTTAAATTTTTTATCTGACAAAAAGGGGA
* ** * * * * * *
36982074 TGTCGGCCATGACATAACCAACACAAAAAAAATTTGATTTTTTATTTAGATAAAAA-AGAGTGTC
1 TGTCGGCCATTACATGGCCAACAC-CAAAAAATATAATTTTTTATTCAAATAAAAAGGGA-TGTC
* * * * *
36982138 GGTCATGCAATGGCCTACACCAAAAAAATTTGAAATTTTTTATCTGAAAAAAAAGGGG-
64 GGCCATGTAATGACCAACACCAAAAAAATTT-AAATTTTTTATCTG-ACAAAAAGGGGA
** * * *
36982196 TGTCAACTATTGCATGGCCAACA-CAAAAAA-ATGATTTTTT
1 TGTCGGCCATTACATGGCCAACACCAAAAAATATAATTTTTT
36982236 TTATTTTCAT
Statistics
Matches: 581, Mismatches: 125, Indels: 92
0.73 0.16 0.12
Matches are distributed among these distances:
113 26 0.04
114 52 0.09
115 10 0.02
116 42 0.07
117 48 0.08
118 77 0.13
119 109 0.19
120 76 0.13
121 25 0.04
122 95 0.16
123 21 0.04
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (120 bp):
TGTCGGCCATTACATGGCCAACACCAAAAAATATAATTTTTTATTCAAATAAAAAGGGATGTCGG
CCATGTAATGACCAACACCAAAAAAATTTAAATTTTTTATCTGACAAAAAGGGGA
Found at i:36981707 original size:181 final size:180
Alignment explanation
Indices: 36981365--36982235 Score: 458
Period size: 179 Copynumber: 4.9 Consensus size: 180
36981355 AGAAAGTTGG
* * * *
36981365 TGTCGGCCAT-TACATGGCCAACACC-AAAAAATAT-AA-TTTTTTTATCAAATAAATAGGGGTG
1 TGTCGGCCATGTA-ATGGCCAACACCAAAAAAATTTAAATTTTTTTTACCAAATAAAAAAGGGTG
* * * *
36981426 TCGGCCATAGCATGACTAACACCATAAAAATTAAATTTTTTATCTGACAAAAAGGGGATGTCGGC
65 TCGGCAATAGAATGACCAACACCA-AAAAATTAAATTTTTTATCTGACAAAAAGGGGATGTCGAC
* ** * * *
36981491 CATGTCATGGCCAACACCCAAAAATTTGATTTTTTATTCAGATAAAAA-TGGA
129 CATGTCATGGCCAACACCAAAAAAAATAATTTTTTA-CCAGATAAAAAGGGGA
36981543 TGTCGGCCATGTAATGGCCAACACCAAAAAAATTTAAATTTTTTTTACCAAATAAAAAAAGGGTG
1 TGTCGGCCATGTAATGGCCAACACCAAAAAAATTTAAATTTTTTTTACCAAAT-AAAAAAGGGTG
36981608 TCGGCAAT-GAAATGACCAACACC-AAAAATTAGAATTTTTTATCTGACAAAAAAGGGG-TGTCG
65 TCGGCAATAG-AATGACCAACACCAAAAAATTA-AATTTTTTATCTGAC-AAAAAGGGGATGTCG
* * * *
36981670 ACCAT-TGCATGGCCGATA-CAAAAAAAATAATTTTTTTACCAGTTAAAAAGGGGG
127 ACCATGT-CATGGCCAACACCAAAAAAAATAA-TTTTTTACCAGATAAAAAGGGGA
* ** * * * * * **
36981724 TGTCGACCATGGCATGACAAACACAAAAAAAATTCAAATTTTTAATCTGA-CAAAT---AGGGGG
1 TGTCGGCCATGTAATGGCCAACACCAAAAAAATTTAAATTTTT--T-TTACCAAATAAAAAAGGG
* * ** ** * *
36981785 TGTCGGTC-ATGGCATGGTCAACACCAAAAAATTTGATTTTTTATTCAGATAAAAAGGGG-TGTC
63 TGTCGG-CAATAGAATGACCAACACCAAAAAATTAAATTTTTTA-TCTGACAAAAAGGGGATGTC
** * ** *
36981848 GACCATG-CAATGATCAACA-C--TAAAAA-AA-TTTGAACCAGATAAAAAATGGGA
126 GACCATGTC-ATGGCCAACACCAAAAAAAATAATTTTTTACCAGAT-AAAAAGGGGA
* ** * *
36981899 TGTCGGCCATGTAATGGCGC-ACACC--AAAAATTTGAATTTTTTATT-TGACA-AAAAGAGGGT
1 TGTCGGCCATGTAATGGC-CAACACCAAAAAAATTTAAATTTTTT-TTACCAAATAAAAAAGGGT
* * * * ** ** * * * *
36981959 GTCGATC-ATTGCATAATAAACATAAAAAAATT-AATTTTTTACCAGATAAAAAAGAGGATGTCG
64 GTCG-GCAATAGAATGACCAACACCAAAAAATTAAATTTTTTATCTGA-CAAAAAGGGGATGTCG
* * * ** * * *
36982022 GCCATGGCATGACCAACA--AAAAAATAA-AAAATTTTATCTGATAAAAAGGGGG
127 ACCATGTCATGGCCAACACCAAAAAA-AATAATTTTTTACCAGATAAAAAGGGGA
** * * * * *
36982074 TGTCGGCCATG-ACATAACCAACACAAAAAAAATTT-GATTTTTTATT--TAGATAAAAAAGAGT
1 TGTCGGCCATGTA-ATGGCCAACACCAAAAAAATTTAAATTTTTT-TTACCAAATAAAAAAGGGT
* * *
36982135 GTCGGTC-AT-GCAATGGCCTACACCAAAAAAATTTGAAATTTTTTATCTGAAAAAAAAGGGG-T
64 GTCGG-CAATAG-AATGACCAACACC-AAAAAA-TT-AAATTTTTTATCTG-ACAAAAAGGGGAT
* * *
36982197 GTCAACTAT-TGCATGGCCAACA-C-AAAAAAATGATTTTTT
123 GTCGACCATGT-CATGGCCAACACCAAAAAAAATAATTTTTT
36982236 TTATTTTCAT
Statistics
Matches: 537, Mismatches: 107, Indels: 97
0.72 0.14 0.13
Matches are distributed among these distances:
171 8 0.01
172 16 0.03
173 63 0.12
174 15 0.03
175 59 0.11
176 39 0.07
177 19 0.04
178 27 0.05
179 93 0.17
180 61 0.11
181 93 0.17
182 36 0.07
183 6 0.01
184 2 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (180 bp):
TGTCGGCCATGTAATGGCCAACACCAAAAAAATTTAAATTTTTTTTACCAAATAAAAAAGGGTGT
CGGCAATAGAATGACCAACACCAAAAAATTAAATTTTTTATCTGACAAAAAGGGGATGTCGACCA
TGTCATGGCCAACACCAAAAAAAATAATTTTTTACCAGATAAAAAGGGGA
Found at i:36981785 original size:120 final size:120
Alignment explanation
Indices: 36981419--36981877 Score: 310
Period size: 120 Copynumber: 3.8 Consensus size: 120
36981409 TCAAATAAAT
* * * * * * * *
36981419 AGGGGTGTCGGCCATAGCATGACTAACACCATAAAAATTAAATTTTTTAT-CTGACAAAAAGGGG
1 AGGGGTGTCGACCATGGCATGGCCAACACCAAAAAAAAT-AATTTTTTATCCAGATAAAAAGGGG
* ** ** * * * * *
36981483 ATGTCGGCCATGTC-ATGGCCAACAC-CCAAAAATTTGATTTTTTATTCAGA-TAAAA
65 -TGTCGACCATG-CAATGATCAACACAAAAAAAATTAGAATTTTTAATCTGACAAAAA
* * * ** * * * *
36981538 ATGGATGTCGGCCATGTAATGGCCAACACCAAAAAAATTTAAATTTTTTTTACCAAATAAAAAAA
1 AGGGGTGTCGACCATGGCATGGCCAACACCAAAAAAA-AT-AATTTTTTAT-CCAGAT-AAAAAG
* * * * * *
36981603 GGGTGTCGGCAATGAAATGACCAACAC--CAAAAATTAGAATTTTTTATCTGACAAAAA
62 GGGTGTCGACCATGCAATGATCAACACAAAAAAAATTAGAATTTTTAATCTGACAAAAA
* * * *
36981660 AGGGGTGTCGACCATTGCATGGCCGATA-CAAAAAAAATAATTTTTT-TACCAGTTAAAAAGGGG
1 AGGGGTGTCGACCATGGCATGGCCAACACCAAAAAAAATAATTTTTTAT-CCAGATAAAAA-GGG
*
36981723 GTGTCGACCATGGC-ATGA-CAAACACAAAAAAAATTCA-AATTTTTAATCTGACAAATA
64 GTGTCGACCAT-GCAATGATC-AACACAAAAAAAATT-AGAATTTTTAATCTGACAAAAA
* ** * ** * *
36981780 GGGGGTGTCGGTCATGGCATGGTCAACACCAAAAAATTTGATTTTTTATTCAGATAAAAAGGGGT
1 AGGGGTGTCGACCATGGCATGGCCAACACCAAAAAAAATAATTTTTTATCCAGATAAAAAGGGGT
*
36981845 GTCGACCATGCAATGATCAACACTAAAAAAATT
66 GTCGACCATGCAATGATCAACACAAAAAAAATT
36981878 TGAACCAGAT
Statistics
Matches: 271, Mismatches: 53, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
117 6 0.02
118 26 0.10
119 40 0.15
120 91 0.34
121 53 0.20
122 47 0.17
123 8 0.03
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.26
Consensus pattern (120 bp):
AGGGGTGTCGACCATGGCATGGCCAACACCAAAAAAAATAATTTTTTATCCAGATAAAAAGGGGT
GTCGACCATGCAATGATCAACACAAAAAAAATTAGAATTTTTAATCTGACAAAAA
Found at i:36999805 original size:16 final size:16
Alignment explanation
Indices: 36999784--36999821 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
36999774 TTTGGTTCGT
*
36999784 TGTAATGGAATAGAAC
1 TGTAATAGAATAGAAC
36999800 TGTAATAGAATAGAAC
1 TGTAATAGAATAGAAC
36999816 TGTAAT
1 TGTAAT
36999822 CAGTAATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.45, C:0.05, G:0.21, T:0.29
Consensus pattern (16 bp):
TGTAATAGAATAGAAC
Found at i:37000054 original size:57 final size:57
Alignment explanation
Indices: 36999991--37000107 Score: 182
Period size: 57 Copynumber: 2.1 Consensus size: 57
36999981 AATTTTAATG
* * *
36999991 ATTATTATTAAATATAATTTAATAAAATATTA-ATTAATTTAATTATATTTTAACATA
1 ATTATTATTAAATACAATTTAATAAAATAATATA-TAATTTAATAATATTTTAACATA
*
37000048 ATTATTATTAAATACAATTTAATAAAATAATATATAATTTAATAATATTTTAATATA
1 ATTATTATTAAATACAATTTAATAAAATAATATATAATTTAATAATATTTTAACATA
37000105 ATT
1 ATT
37000108 TAATATATAA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 54 0.98
58 1 0.02
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (57 bp):
ATTATTATTAAATACAATTTAATAAAATAATATATAATTTAATAATATTTTAACATA
Found at i:37000109 original size:10 final size:10
Alignment explanation
Indices: 37000001--37000114 Score: 78
Period size: 10 Copynumber: 11.6 Consensus size: 10
36999991 ATTATTATTA
37000001 AATATAATTT
1 AATATAATTT
*
37000011 AATAAAATATT
1 AATATAAT-TT
37000022 AAT-TAATTT
1 AATATAATTT
*
37000031 AATTATATTTT
1 AA-TATAATTT
*
37000042 AACATAA-TT
1 AATATAATTT
*
37000051 -AT-T-ATTA
1 AATATAATTT
*
37000058 AATACAATTT
1 AATATAATTT
* *
37000068 AATA-AAATA
1 AATATAATTT
37000077 ATATATAATTT
1 A-ATATAATTT
*
37000088 AATAATATTTT
1 AAT-ATAATTT
37000099 AATATAATTT
1 AATATAATTT
37000109 AATATA
1 AATATA
37000115 TAAAAAATGC
Statistics
Matches: 79, Mismatches: 15, Indels: 20
0.69 0.13 0.18
Matches are distributed among these distances:
6 1 0.01
7 2 0.03
8 3 0.04
9 10 0.13
10 38 0.48
11 25 0.32
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (10 bp):
AATATAATTT
Found at i:37001658 original size:20 final size:20
Alignment explanation
Indices: 37001602--37001659 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
37001592 TATTTTTTAA
37001602 AATTTAAAAA-T-TCAAAAA-
1 AATTTAAAAAGTAT-AAAAAT
* *
37001620 AATTTAAAAATTATTAAAAT
1 AATTTAAAAAGTATAAAAAT
*
37001640 AATTTAAAAGGTATAAAAAT
1 AATTTAAAAAGTATAAAAAT
37001660 TATAATTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 10 0.30
19 5 0.15
20 18 0.55
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (20 bp):
AATTTAAAAAGTATAAAAAT
Found at i:37002283 original size:15 final size:15
Alignment explanation
Indices: 37002235--37002283 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
37002225 TTGTCTCAGG
*
37002235 TTATATTTTAATTAT
1 TTATGTTTTAATTAT
* *
37002250 TTATGTTTGAAAT-T
1 TTATGTTTTAATTAT
*
37002264 TTATGTTTTAGTTAT
1 TTATGTTTTAATTAT
37002279 TTATG
1 TTATG
37002284 CTATCATTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
14 11 0.41
15 16 0.59
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (15 bp):
TTATGTTTTAATTAT
Found at i:37003898 original size:110 final size:109
Alignment explanation
Indices: 37003715--37003924 Score: 305
Period size: 110 Copynumber: 1.9 Consensus size: 109
37003705 TTAGTCATGG
* * * *
37003715 AAAATGAGAAATCTTGGTTATTTATATCTCCATAAATGAAAAGTCTCATATTTAATGGGAATAAT
1 AAAATGACAAATCTTGGTTATTTATATCTCCATAAAAGAAAAATCTCATATTTAATGGGAATAAC
37003780 TTATATTAGGATGATCTTAAAATATATAATTTTTAAGTATTAAT
66 TTATATTAGGATGATCTTAAAATATATAATTTTTAAGTATTAAT
* * *
37003824 AAAATGACAAATCTTGGTTCTTTATATCTCCATAAACAGAAAAAAT-TCGTATTTGATGGGAATA
1 AAAATGACAAATCTTGGTTATTTATATCTCCATAAA-AG-AAAAATCTCATATTTAATGGGAATA
** *
37003888 ACTTATATTAGGATGATCTTACGATATATAGTTTTTA
64 ACTTATATTAGGATGATCTTAAAATATATAATTTTTA
37003925 GTGTATCTTA
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
109 34 0.38
110 50 0.56
111 5 0.06
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.39
Consensus pattern (109 bp):
AAAATGACAAATCTTGGTTATTTATATCTCCATAAAAGAAAAATCTCATATTTAATGGGAATAAC
TTATATTAGGATGATCTTAAAATATATAATTTTTAAGTATTAAT
Found at i:37005121 original size:2 final size:2
Alignment explanation
Indices: 37005116--37005146 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
37005106 TGGTTTTTTT
37005116 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37005147 TTCCGTTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37015066 original size:2 final size:2
Alignment explanation
Indices: 37015059--37015086 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
37015049 TTTATCTTTC
37015059 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37015087 TATGATAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37016797 original size:249 final size:250
Alignment explanation
Indices: 37016329--37016832 Score: 967
Period size: 249 Copynumber: 2.0 Consensus size: 250
37016319 GATGTTGTTC
*
37016329 ATAT-TAGGGGTCTCGAATTTGAGCGTCTGTGTGTGCAAGATATGTGTATGTTGTCAAAAAATTA
1 ATATATAGGGGTCCCGAATTTGAGCGTCTGTGTGTGCAAGATATGTGTATGTTGTCAAAAAATTA
*
37016393 AGAAAGTATGAGCAGATACAACTATGTAATCATACCAGTATATTCAAAAAAAATTAAAATTTCTA
66 AGAAAGTATGAGCAGATACAACTATGTAATCACACCAGTATATTCAAAAAAAATTAAAATTTCTA
37016458 TAATATAAATATAACAACTATAAATTATAGAGTTGTTGGATTTAAATATTTTCATTCATCCAACA
131 TAATATAAATATAACAACTATAAATTATAGAGTTGTTGGATTTAAATATTTTCATTCATCCAACA
*
37016523 ATTCATCAAATTGATCATTCAAAAATTAGGATTTCTATAATATGCGTGTATATAT
196 ATTCATCAAATTGATCATTCAAAAATTAGGATTTCTATAATATGCGTATATATAT
37016578 ATATATAGGGGTCCCGAATTTGAGCGTCTGTGTGTGCAAGATATGTGTATGTTGTCAAAAAATTA
1 ATATATAGGGGTCCCGAATTTGAGCGTCTGTGTGTGCAAGATATGTGTATGTTGTCAAAAAATTA
37016643 AGAAAGTATGAGCAGATACAACTATGTAATCACACCAGTATATTC-AAAAAAATTAAAATTTCTA
66 AGAAAGTATGAGCAGATACAACTATGTAATCACACCAGTATATTCAAAAAAAATTAAAATTTCTA
37016707 TAATATAAATATAACAACTATAAATTATAGAGTTGTTGGATTTAAATATTTTCATTCATCCAACA
131 TAATATAAATATAACAACTATAAATTATAGAGTTGTTGGATTTAAATATTTTCATTCATCCAACA
37016772 ATTCATCAAATTGATCATTCAAAAATTAGGATTTCTATAATATGCGTATATATAT
196 ATTCATCAAATTGATCATTCAAAAATTAGGATTTCTATAATATGCGTATATATAT
37016827 ATATAT
1 ATATAT
37016833 TTAACAACTA
Statistics
Matches: 251, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
249 148 0.59
250 103 0.41
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (250 bp):
ATATATAGGGGTCCCGAATTTGAGCGTCTGTGTGTGCAAGATATGTGTATGTTGTCAAAAAATTA
AGAAAGTATGAGCAGATACAACTATGTAATCACACCAGTATATTCAAAAAAAATTAAAATTTCTA
TAATATAAATATAACAACTATAAATTATAGAGTTGTTGGATTTAAATATTTTCATTCATCCAACA
ATTCATCAAATTGATCATTCAAAAATTAGGATTTCTATAATATGCGTATATATAT
Found at i:37017353 original size:19 final size:18
Alignment explanation
Indices: 37017331--37017374 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
37017321 AAATTGTAAT
37017331 AAAATATTAAAAATCATAA
1 AAAATATTAAAAATCA-AA
*
37017350 AAAATA-TAAAAATTAAA
1 AAAATATTAAAAATCAAA
37017367 AAAATATT
1 AAAATATT
37017375 TAGATTATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 8 0.35
18 9 0.39
19 6 0.26
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAATATTAAAAATCAAA
Found at i:37017354 original size:10 final size:9
Alignment explanation
Indices: 37017331--37017373 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
37017321 AAATTGTAAT
*
37017331 AAAATATTA
1 AAAATATAA
37017340 AAAATCATAA
1 AAAAT-ATAA
37017350 AAAATATAA
1 AAAATATAA
*
37017359 AAATTA-AA
1 AAAATATAA
37017367 AAAATAT
1 AAAATAT
37017374 TTAGATTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 7 0.24
9 14 0.48
10 8 0.28
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (9 bp):
AAAATATAA
Found at i:37017368 original size:17 final size:18
Alignment explanation
Indices: 37017331--37017373 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
37017321 AAATTGTAAT
37017331 AAAATATTAAAAATCATAA
1 AAAATA-TAAAAATCATAA
*
37017350 AAAATATAAAAATTA-AA
1 AAAATATAAAAATCATAA
37017367 AAAATAT
1 AAAATAT
37017374 TTAGATTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.39
18 8 0.35
19 6 0.26
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAATATAAAAATCATAA
Found at i:37017452 original size:20 final size:19
Alignment explanation
Indices: 37017411--37017509 Score: 76
Period size: 19 Copynumber: 5.2 Consensus size: 19
37017401 CGAAAAAAAT
*
37017411 AAATGTTAAAAATATT-TT-
1 AAATTTTAAAAA-ATTATTA
37017429 AAATTTGTAAAAAATTATTA
1 AAATTT-TAAAAAATTATTA
** * *
37017449 AAATAATAAAACATTATTT
1 AAATTTTAAAAAATTATTA
* * *
37017468 AATTTTTTAAAATTTATTAA
1 AAATTTTAAAAAATTATT-A
*
37017488 AAATTTTAAATAATTATTA
1 AAATTTTAAAAAATTATTA
37017507 AAA
1 AAA
37017510 AATTAAATAA
Statistics
Matches: 61, Mismatches: 16, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
18 8 0.13
19 35 0.57
20 18 0.30
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.43
Consensus pattern (19 bp):
AAATTTTAAAAAATTATTA
Found at i:37017492 original size:11 final size:10
Alignment explanation
Indices: 37017438--37017522 Score: 56
Period size: 10 Copynumber: 8.8 Consensus size: 10
37017428 TAAATTTGTA
37017438 AAAAATTATT
1 AAAAATTATT
*
37017448 -AAAA-TAAT
1 AAAAATTATT
37017456 AAAACATTATT
1 AAAA-ATTATT
* * *
37017467 -TAATTTTTT
1 AAAAATTATT
*
37017476 AAAATTTATT
1 AAAAATTATT
37017486 AAAAATT-TT
1 AAAAATTATT
37017495 AAATAATTATT
1 AAA-AATTATT
37017506 AAAAA--ATT
1 AAAAATTATT
37017514 AAATAATTA
1 AAA-AATTA
37017523 ACTAATCAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
8 9 0.16
9 18 0.31
10 22 0.38
11 9 0.16
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (10 bp):
AAAAATTATT
Found at i:37017493 original size:21 final size:20
Alignment explanation
Indices: 37017472--37017522 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
37017462 TTATTTAATT
*
37017472 TTTTAAA-ATTTATTAAAAA
1 TTTTAAATAATTATTAAAAA
37017491 TTTTAAATAATTATTAAAAA
1 TTTTAAATAATTATTAAAAA
*
37017511 -ATTAAATAATTA
1 TTTTAAATAATTA
37017523 ACTAATCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 18 0.62
20 11 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTTAAATAATTATTAAAAA
Found at i:37017793 original size:19 final size:20
Alignment explanation
Indices: 37017748--37017902 Score: 99
Period size: 20 Copynumber: 7.8 Consensus size: 20
37017738 CAATTCACAT
*
37017748 TTTTTAATCATTATTTACAA
1 TTTTTAATAATTATTTACAA
* *
37017768 ATTTTAATAATTATTTGC-A
1 TTTTTAATAATTATTTACAA
**
37017787 TTTTTAAT-ATT-TTCCCCAA
1 TTTTTAATAATTATT-TACAA
37017806 TTTTTAATAATT-TTTACAAA
1 TTTTTAATAATTATTTAC-AA
* *
37017826 TTTTAAATAAGGTT-TTTATAA
1 TTTTTAATAA--TTATTTACAA
*
37017847 TTTTTAATAACTTTTTTACAA
1 TTTTTAATAA-TTATTTACAA
* *
37017868 -TATTAA-AATATTTTTAACAA
1 TTTTTAATAAT-TATTT-ACAA
*
37017888 TATTTAATAATTATT
1 TTTTTAATAATTATT
37017903 CAAATATTTT
Statistics
Matches: 107, Mismatches: 17, Indels: 21
0.74 0.12 0.14
Matches are distributed among these distances:
17 2 0.02
18 5 0.05
19 25 0.23
20 42 0.39
21 24 0.22
22 9 0.08
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (20 bp):
TTTTTAATAATTATTTACAA
Found at i:37017817 original size:10 final size:10
Alignment explanation
Indices: 37017804--37017899 Score: 63
Period size: 10 Copynumber: 9.4 Consensus size: 10
37017794 TATTTTCCCC
37017804 AATTTTTAAT
1 AATTTTTAAT
37017814 AATTTTTACA-
1 AATTTTTA-AT
*
37017824 AATTTTAAAT
1 AATTTTTAAT
37017834 AAGGTTTTT-AT
1 AA--TTTTTAAT
37017845 AATTTTTAAT
1 AATTTTTAAT
* *
37017855 AACTTTTTTAC
1 AA-TTTTTAAT
* *
37017866 AA-TATTAAA
1 AATTTTTAAT
*
37017875 ATATTTTTAAC
1 A-ATTTTTAAT
*
37017886 AATATTTAAT
1 AATTTTTAAT
37017896 AATT
1 AATT
37017900 ATTCAAATAT
Statistics
Matches: 66, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
9 11 0.17
10 32 0.48
11 19 0.29
12 4 0.06
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (10 bp):
AATTTTTAAT
Found at i:37017848 original size:21 final size:21
Alignment explanation
Indices: 37017803--37017874 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
37017793 ATATTTTCCC
*
37017803 CAATTTTTAATAA--TTTTTA
1 CAATTTTAAATAACGTTTTTA
*
37017822 CAAATTTTAAATAAGGTTTTTA
1 C-AATTTTAAATAACGTTTTTA
* * *
37017844 TAATTTTTAATAACTTTTTTA
1 CAATTTTAAATAACGTTTTTA
*
37017865 CAATATTAAA
1 CAATTTTAAA
37017875 ATATTTTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
19 1 0.02
20 11 0.26
21 24 0.57
22 6 0.14
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (21 bp):
CAATTTTAAATAACGTTTTTA
Found at i:37025615 original size:1 final size:1
Alignment explanation
Indices: 37025609--37025637 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
37025599 AAGATAAAGT
37025609 CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
37025638 GCTTTTTCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:37034675 original size:23 final size:25
Alignment explanation
Indices: 37034649--37034694 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37034639 CCAATTAGGG
37034649 AATTAT-TGTTTAG-ATTTAATTCA
1 AATTATCTGTTTAGAATTTAATTCA
*
37034672 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
37034695 TGGATCAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCA
Found at i:37035807 original size:12 final size:13
Alignment explanation
Indices: 37035790--37035819 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
37035780 TATTTTTTTG
37035790 TTTTTA-ATTTAA
1 TTTTTACATTTAA
37035802 TTTTTACATTTAA
1 TTTTTACATTTAA
37035815 TTTTT
1 TTTTT
37035820 TTATTTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTACATTTAA
Found at i:37035825 original size:13 final size:13
Alignment explanation
Indices: 37035790--37035831 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
37035780 TATTTTTTTG
37035790 TTTTTAATTTAA-
1 TTTTTAATTTAAT
37035802 TTTTTACATTTAAT
1 TTTTTA-ATTTAAT
* *
37035816 TTTTTTATTTTAT
1 TTTTTAATTTAAT
37035829 TTT
1 TTT
37035832 ATAGGTTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 6 0.23
13 15 0.58
14 5 0.19
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTAATTTAAT
Found at i:37037611 original size:5 final size:5
Alignment explanation
Indices: 37037601--37037626 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
37037591 AGCTTCAAGA
37037601 GTGAT GTGAT GTGAT GTGAT GTGAT G
1 GTGAT GTGAT GTGAT GTGAT GTGAT G
37037627 AGAGGTCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.38
Consensus pattern (5 bp):
GTGAT
Found at i:37037778 original size:22 final size:22
Alignment explanation
Indices: 37037753--37037795 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
37037743 GCAACAATAG
37037753 GCACACACAGTGCTAAACAGAA
1 GCACACACAGTGCTAAACAGAA
*
37037775 GCACACACAGTGCTGAACAGA
1 GCACACACAGTGCTAAACAGA
37037796 GGGCACAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.28, G:0.21, T:0.09
Consensus pattern (22 bp):
GCACACACAGTGCTAAACAGAA
Found at i:37040560 original size:24 final size:24
Alignment explanation
Indices: 37040532--37040586 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
37040522 ATTTATTTAC
* *
37040532 AAATTTGGATTTATCTTAAAATTT
1 AAATTTGAATTAATCTTAAAATTT
* * *
37040556 AAATTTAAATTAATTTTTAAATTT
1 AAATTTGAATTAATCTTAAAATTT
37040580 AAATTTG
1 AAATTTG
37040587 TGTTAAATTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (24 bp):
AAATTTGAATTAATCTTAAAATTT
Found at i:37040561 original size:18 final size:18
Alignment explanation
Indices: 37040514--37040562 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
37040504 GGTTTAAGTT
37040514 AATTCTAAATTTATTTACA
1 AATT-TAAATTTATTTACA
**
37040533 AATTTGGATTTATCTTA-A
1 AATTTAAATTTAT-TTACA
37040551 AATTTAAATTTA
1 AATTTAAATTTA
37040563 AATTAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.49
Consensus pattern (18 bp):
AATTTAAATTTATTTACA
Found at i:37040568 original size:18 final size:18
Alignment explanation
Indices: 37040547--37040584 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
37040537 TGGATTTATC
37040547 TTAAAATTTAAATTTAAA
1 TTAAAATTTAAATTTAAA
**
37040565 TTAATTTTTAAATTTAAA
1 TTAAAATTTAAATTTAAA
37040583 TT
1 TT
37040585 TGTGTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTAAAATTTAAATTTAAA
Found at i:37040594 original size:17 final size:16
Alignment explanation
Indices: 37040554--37040611 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 16
37040544 ATCTTAAAAT
*
37040554 TTAAATTTAAATTAATTT
1 TTAAATTTAAATT--TTG
37040572 TTAAATTTAAATTTGTG
1 TTAAATTTAAATTT-TG
* *
37040589 TTAAATTTAGATTTAG
1 TTAAATTTAAATTTTG
37040605 -TAAATTT
1 TTAAATTT
37040612 GGAGTAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
15 7 0.19
16 2 0.06
17 14 0.39
18 13 0.36
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (16 bp):
TTAAATTTAAATTTTG
Found at i:37041726 original size:22 final size:23
Alignment explanation
Indices: 37041684--37041727 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
37041674 TTTTAAAAAC
*
37041684 AAATAAAAAAGGATTTTAAAAGA
1 AAATAAAAAAGGATTTCAAAAGA
37041707 AAAT-AAAAA-GAGTTTCAAAAG
1 AAATAAAAAAGGA-TTTCAAAAG
37041728 TTTGGAAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 2 0.11
22 13 0.68
23 4 0.21
ACGTcount: A:0.64, C:0.02, G:0.14, T:0.20
Consensus pattern (23 bp):
AAATAAAAAAGGATTTCAAAAGA
Found at i:37042487 original size:30 final size:30
Alignment explanation
Indices: 37042451--37042746 Score: 461
Period size: 30 Copynumber: 9.9 Consensus size: 30
37042441 AATTGTCTAG
*
37042451 AAATTACATTTTGACCCTAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
* **
37042481 AAATTACATTTTGACCCTAAATTTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
* *
37042511 AAATTATATTTTGACCCTAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
* *
37042541 AAATTACATTTTAACCCCAAAGCTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
37042571 AAATTACATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
37042601 AAATTACATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
*
37042631 AAATTACATTTTAACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
*
37042661 AAATTACATTTTAACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
37042691 AAATTACATTTTGACCCTCAAAAC-TTT-CA
1 AAATTACATTTTGACCC-CAAAACTTTTCCA
*
37042720 AAAGTTACATTTTGACCCCTAAACTTT
1 AAA-TTACATTTTGACCCCAAAACTTT
37042747 CCTAAATCCC
Statistics
Matches: 249, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
29 10 0.04
30 233 0.94
31 6 0.02
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.36
Consensus pattern (30 bp):
AAATTACATTTTGACCCCAAAACTTTTCCA
Found at i:37042592 original size:19 final size:19
Alignment explanation
Indices: 37042568--37042622 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 19
37042558 CAAAGCTTTT
37042568 CCAAAATTACATTTTGACC
1 CCAAAATTACATTTTGACC
37042587 CC-AAA--AC-TTTT----
1 CCAAAATTACATTTTGACC
37042598 CCAAAATTACATTTTGACC
1 CCAAAATTACATTTTGACC
37042617 CCAAAA
1 CCAAAA
37042623 CTTTTCCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 16
0.64 0.00 0.36
Matches are distributed among these distances:
11 2 0.07
12 3 0.11
14 2 0.07
15 8 0.29
16 2 0.07
18 3 0.11
19 8 0.29
ACGTcount: A:0.40, C:0.27, G:0.04, T:0.29
Consensus pattern (19 bp):
CCAAAATTACATTTTGACC
Found at i:37042652 original size:19 final size:19
Alignment explanation
Indices: 37042628--37042682 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 19
37042618 CAAAACTTTT
37042628 CCAAAATTACATTTTAACC
1 CCAAAATTACATTTTAACC
37042647 CC-AAA--AC-TTTT----
1 CCAAAATTACATTTTAACC
37042658 CCAAAATTACATTTTAACC
1 CCAAAATTACATTTTAACC
37042677 CCAAAA
1 CCAAAA
37042683 CTTTTCCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 16
0.64 0.00 0.36
Matches are distributed among these distances:
11 2 0.07
12 3 0.11
14 2 0.07
15 8 0.29
16 2 0.07
18 3 0.11
19 8 0.29
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (19 bp):
CCAAAATTACATTTTAACC
Found at i:37042797 original size:59 final size:58
Alignment explanation
Indices: 37042718--37042855 Score: 174
Period size: 59 Copynumber: 2.4 Consensus size: 58
37042708 TCAAAACTTT
* *
37042718 CAAAAGTTA-CATTTTGACCCCTAAACTTTCCT-AAATCCCATTTTTAACCTCGATTTCAC
1 CAAAAATTACCATTTT-ACCCCGAAACTTT--TAAAATCCCATTTTTAACCTCGATTTCAC
* * *
37042777 CAAAAATTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTTAACCTCGATTTTAC
1 CAAAAATTACCATTTTA-CCCCGAAACTTTTAAAATCCCATTTTTAACCTCGATTTCAC
37042836 C-AAAATTACCATTTTACCCC
1 CAAAAATTACCATTTTACCCC
37042856 CGGGTATCCA
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
57 4 0.06
58 16 0.23
59 35 0.49
60 16 0.23
ACGTcount: A:0.32, C:0.28, G:0.04, T:0.36
Consensus pattern (58 bp):
CAAAAATTACCATTTTACCCCGAAACTTTTAAAATCCCATTTTTAACCTCGATTTCAC
Found at i:37042850 original size:30 final size:30
Alignment explanation
Indices: 37042755--37042850 Score: 101
Period size: 29 Copynumber: 3.2 Consensus size: 30
37042745 TTCCTAAATC
*
37042755 CCATTTTTAACCTCGATTTCACCAAAAATTA
1 CCATTTTTAACCTCGATTTTACC-AAAATTA
* * *
37042786 CCA-TTTTACCCCCGAATCTTT--TAAAATT-
1 CCATTTTTAACCTCG-AT-TTTACCAAAATTA
37042814 CCATTTTTAACCTCGATTTTACCAAAATTA
1 CCATTTTTAACCTCGATTTTACCAAAATTA
37042844 CCATTTT
1 CCATTTT
37042851 ACCCCCGGGT
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
27 3 0.06
28 5 0.10
29 21 0.40
30 16 0.31
31 5 0.10
32 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.03, T:0.40
Consensus pattern (30 bp):
CCATTTTTAACCTCGATTTTACCAAAATTA
Found at i:37048205 original size:12 final size:12
Alignment explanation
Indices: 37048180--37048223 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
37048170 CAGATGTAAT
37048180 GAAAAAAGAGAAA
1 GAAAAAAGA-AAA
37048193 GAAAAAAGAAAA
1 GAAAAAAGAAAA
* *
37048205 GCAAAAACAAGAA
1 GAAAAAAGAA-AA
37048218 GAAAAA
1 GAAAAA
37048224 CAAAATAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 11 0.41
13 16 0.59
ACGTcount: A:0.77, C:0.05, G:0.18, T:0.00
Consensus pattern (12 bp):
GAAAAAAGAAAA
Found at i:37049730 original size:51 final size:50
Alignment explanation
Indices: 37049669--37049802 Score: 171
Period size: 51 Copynumber: 2.7 Consensus size: 50
37049659 AAGCATGGAA
* *
37049669 GAAAGATCTAAGACCGCAACGGTAGATCCAGTACCACGAAGATACAGA-AGG
1 GAAAGATCTAAGACCGCAACGGTAGATCCAGTACCACGAACACAC-GACA-G
** *
37049720 GAAAGATCTAAGGTCGCAACGGTAGATCTAGTACCACGAACACACGACAG
1 GAAAGATCTAAGACCGCAACGGTAGATCCAGTACCACGAACACACGACAG
* * *
37049770 GAAAGATCTAAGCCCGCAACGGCAGATTCAGTA
1 GAAAGATCTAAGACCGCAACGGTAGATCCAGTA
37049803 TCGCAAAGAC
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
50 31 0.43
51 41 0.57
ACGTcount: A:0.39, C:0.23, G:0.25, T:0.13
Consensus pattern (50 bp):
GAAAGATCTAAGACCGCAACGGTAGATCCAGTACCACGAACACACGACAG
Found at i:37050140 original size:38 final size:38
Alignment explanation
Indices: 37050098--37050362 Score: 192
Period size: 38 Copynumber: 7.0 Consensus size: 38
37050088 CCTATCCGCT
* *
37050098 TGAAATTGAAGT-AGAGTTGGATAACACGTCTTTATCTC
1 TGAAATTGAAGTAAGAGCTGGAT-ACAAGTCTTTATCTC
** * **
37050136 TGAAATTGAAGTAAGAGCAAGAT-C-ATTCCCTATCCTC
1 TGAAATTGAAGTAAGAGCTGGATACAAGTCTTTAT-CTC
*
37050173 TTGAAATTGAAGT-AGAGTTGGATAACAAGTCTTTATCTC
1 -TGAAATTGAAGTAAGAGCTGGAT-ACAAGTCTTTATCTC
** ** *
37050212 TGAAATTGAAGTAAGAGCAAGAT-CATTTC-CTATCCTC
1 TGAAATTGAAGTAAGAGCTGGATACAAGTCTTTAT-CTC
37050249 TTGAAATTGAAGTAA-AGCTGGATATCAAGTCTTTATCTC
1 -TGAAATTGAAGTAAGAGCTGGATA-CAAGTCTTTATCTC
* * **
37050288 TGAAAGTGAAGTAAGAG-TAAGATA-ATTTC-TTATCCTC
1 TGAAATTGAAGTAAGAGCT-GGATACAAGTCTTTAT-CTC
*
37050325 TTGAAAATGAAGTAA-AGCTGGATATCAAGTCTTTATCT
1 -TGAAATTGAAGTAAGAGCTGGATA-CAAGTCTTTATCT
37050363 ATAAAAGCCA
Statistics
Matches: 175, Mismatches: 32, Indels: 39
0.71 0.13 0.16
Matches are distributed among these distances:
36 12 0.07
37 36 0.21
38 78 0.45
39 36 0.21
40 13 0.07
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (38 bp):
TGAAATTGAAGTAAGAGCTGGATACAAGTCTTTATCTC
Found at i:37050158 original size:76 final size:76
Alignment explanation
Indices: 37050056--37050362 Score: 454
Period size: 76 Copynumber: 4.0 Consensus size: 76
37050046 AAACTTCATC
* * * * *
37050056 TCTCTGAAATT-ATAGTAAGAACAAGATCTTTTCCTATCCGCTTGAAATTGAAGTAGAGTTGGAT
1 TCTCTGAAATTGA-AGTAAGAGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGAT
*
37050120 AACACGTCTTTA
65 AACAAGTCTTTA
* * *
37050132 TCTCTGAAATTGAAGTAAGAGCAAGATCATTCCCTATCCTCTTGAAATTGAAGTAGAGTTGGATA
1 TCTCTGAAATTGAAGTAAGAGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATA
37050197 ACAAGTCTTTA
66 ACAAGTCTTTA
37050208 TCTCTGAAATTGAAGTAAGAGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATA
1 TCTCTGAAATTGAAGTAAGAGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATA
*
37050273 TCAAGTCTTTA
66 ACAAGTCTTTA
* * * * *
37050284 TCTCTGAAAGTGAAGTAAGAGTAAGATAATTTCTTATCCTCTTGAAAATGAAGTAAAGCTGGATA
1 TCTCTGAAATTGAAGTAAGAGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATA
*
37050349 TCAAGTCTTTA
66 ACAAGTCTTTA
37050360 TCT
1 TCT
37050363 ATAAAAGCCA
Statistics
Matches: 216, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
76 215 1.00
77 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (76 bp):
TCTCTGAAATTGAAGTAAGAGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATA
ACAAGTCTTTA
Found at i:37051142 original size:22 final size:23
Alignment explanation
Indices: 37051100--37051143 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
37051090 TTTTAAAAAC
*
37051100 AAATAAAAAAGGATTTTAAAAGA
1 AAATAAAAAAGGATTTCAAAAGA
37051123 AAAT-AAAAA-GAGTTTCAAAAG
1 AAATAAAAAAGGA-TTTCAAAAG
37051144 TTTGGAAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 2 0.11
22 13 0.68
23 4 0.21
ACGTcount: A:0.64, C:0.02, G:0.14, T:0.20
Consensus pattern (23 bp):
AAATAAAAAAGGATTTCAAAAGA
Found at i:37051905 original size:30 final size:30
Alignment explanation
Indices: 37051869--37052347 Score: 708
Period size: 30 Copynumber: 15.9 Consensus size: 30
37051859 AAATTGTCTA
37051869 AAAATTACATTTTGACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
37051899 AAAATTACATTTTAACCCCCAAAACTTTTCC
1 AAAATTACATTTTGA-CCCCAAAACTTTTCC
*
37051930 AAAATTACATTTTGACCTCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* *
37051960 AAAATTACATTTTGACCCTAAAATTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* *
37051990 AAAATTATATTTTAACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* * *
37052020 AAAATTACATTTTAACCCTAAAAATTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
37052050 AAAATTACATTTTGACCCCCAAAACTTTTCC
1 AAAATTACATTTTGA-CCCCAAAACTTTTCC
* *
37052081 AAAATTACATTTTGACCCTAAAATTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* * * *
37052111 AAAATTATATTTTAACCCTAAAACTTTTCT
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* * *
37052141 AAAATTACATTTTAACCCTAAAATTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
37052171 AAAATTACATTTTGACCCCCAAAACTTTTCC
1 AAAATTACATTTTGA-CCCCAAAACTTTTCC
*
37052202 AAAATTACATTTTGACCCTAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
37052232 AAAATTACATTTTGACCCCAAAATTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
37052262 AAAATTACATTTTGACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* *
37052292 AAAATTACATTTTGACCCTAAAAC-TTTCA
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* *
37052321 AAAATTACATTTTAACCCCTAAACTTT
1 AAAATTACATTTTGACCCCAAAACTTT
37052348 CTTAAATCCC
Statistics
Matches: 408, Mismatches: 37, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
29 25 0.06
30 298 0.73
31 85 0.21
ACGTcount: A:0.38, C:0.23, G:0.02, T:0.36
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCAAAACTTTTCC
Found at i:37052017 original size:121 final size:121
Alignment explanation
Indices: 37051869--37052343 Score: 758
Period size: 121 Copynumber: 3.9 Consensus size: 121
37051859 AAATTGTCTA
*
37051869 AAAATTACATTTTGACCCCAAAACTTTTCCAAAATTACATTTTAACCCCCAAAACTTTTCCAAAA
1 AAAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTAA-CCCCAAAACTTTTCCAAAA
*
37051934 TTACATTTTGA-CCTCAAAACTTTTCCAAAATTACATTTTGACCCTAAAATTTTTCC
65 TTACATTTTGACCCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAATTTTTCC
* * *
37051990 AAAATTATATTTTAACCCCAAAACTTTTCCAAAATTACATTTTAACCCTAAAAATTTTCCAAAAT
1 AAAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTAACCCCAAAACTTTTCCAAAAT
37052055 TACATTTTGACCCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAATTTTTCC
66 TACATTTTGACCCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAATTTTTCC
* * * * *
37052111 AAAATTATATTTTAACCCTAAAACTTTTCTAAAATTACATTTTAACCCTAAAATTTTTCCAAAAT
1 AAAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTAACCCCAAAACTTTTCCAAAAT
*
37052176 TACATTTTGACCCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAACTTTTCC
66 TACATTTTGACCCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAATTTTTCC
* * *
37052232 AAAATTACATTTTGACCCCAAAATTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCCAAAAT
1 AAAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTAACCCCAAAACTTTTCCAAAAT
* * *
37052297 TACATTTTGA-CCCTAAAAC-TTTCAAAAATTACATTTTAACCCCTAAA
66 TACATTTTGACCCCCAAAACTTTTCCAAAATTACATTTTGA-CCCTAAA
37052344 CTTTCTTAAA
Statistics
Matches: 332, Mismatches: 20, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
119 18 0.05
120 43 0.13
121 271 0.82
ACGTcount: A:0.39, C:0.23, G:0.02, T:0.36
Consensus pattern (121 bp):
AAAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTAACCCCAAAACTTTTCCAAAAT
TACATTTTGACCCCCAAAACTTTTCCAAAATTACATTTTGACCCTAAAATTTTTCC
Found at i:37052054 original size:151 final size:150
Alignment explanation
Indices: 37051869--37052347 Score: 746
Period size: 151 Copynumber: 3.2 Consensus size: 150
37051859 AAATTGTCTA
* *
37051869 AAAATTACATTTTGACCCCAAAACTTTTCCAAAATTACATTTTAACCCCCAAAACTTTTCCAAAA
1 AAAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTGACCCCCAAAACTTTTCCAAAA
* * *
37051934 TTACATTTTGACCTCAAAACTTTTCCAAAATTACATTTTGACCCTAAAATTTTTCCAAAATTATA
66 TTACATTTTGACC-CAAAATTTTTCCAAAATTACATTTTGACCCTAAAACTTTTCCAAAATTACA
*
37051999 TTTTAACCCCAAAACTTTTCC
130 TTTTAACCCTAAAACTTTTCC
* *
37052020 AAAATTACATTTTAACCCTAAAAATTTTCCAAAATTACATTTTGACCCCCAAAACTTTTCCAAAA
1 AAAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTGACCCCCAAAACTTTTCCAAAA
* * *
37052085 TTACATTTTGACCCTAAAATTTTTCCAAAATTATATTTTAACCCTAAAACTTTTCTAAAATTACA
66 TTACATTTTGACCC-AAAATTTTTCCAAAATTACATTTTGACCCTAAAACTTTTCCAAAATTACA
*
37052150 TTTTAACCCTAAAATTTTTCC
130 TTTTAACCCTAAAACTTTTCC
* *
37052171 AAAATTACATTTTGACCCCCAAAACTTTTCCAAAATTACATTTTGA-CCCTAAAACTTTTCCAAA
1 AAAATTACATTTT-AACCCCAAAACTTTTCCAAAATTACATTTTGACCCCCAAAACTTTTCCAAA
*
37052235 ATTACATTTTGACCCCAAAATTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCCAAAATTAC
65 ATTACATTTTGA-CCCAAAATTTTTCCAAAATTACATTTTGACCCTAAAACTTTTCCAAAATTAC
* *
37052300 ATTTTGACCCTAAAAC-TTTCA
129 ATTTTAACCCTAAAACTTTTCC
*
37052321 AAAATTACATTTTAACCCCTAAACTTT
1 AAAATTACATTTTAACCCCAAAACTTT
37052348 CTTAAATCCC
Statistics
Matches: 300, Mismatches: 25, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
149 12 0.04
150 18 0.06
151 238 0.79
152 32 0.11
ACGTcount: A:0.38, C:0.23, G:0.02, T:0.36
Consensus pattern (150 bp):
AAAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTGACCCCCAAAACTTTTCCAAAA
TTACATTTTGACCCAAAATTTTTCCAAAATTACATTTTGACCCTAAAACTTTTCCAAAATTACAT
TTTAACCCTAAAACTTTTCC
Found at i:37052383 original size:29 final size:29
Alignment explanation
Indices: 37052360--37052509 Score: 152
Period size: 29 Copynumber: 5.1 Consensus size: 29
37052350 TAAATCCCAT
37052360 TTTTAACCCCGATTTTACCAAAATTTACCA
1 TTTTAACCCCGATTTTACCAAAA-TTACCA
*
37052390 TTTT-ACCCTCGAATCTTT--TAAAATT-CCA
1 TTTTAACCC-CG-AT-TTTACCAAAATTACCA
37052418 TTTTAACCCCGATTTTACCAAAAATTACCA
1 TTTTAACCCCGATTTTACC-AAAATTACCA
* *
37052448 TTTTACCCCCGAATCTTT--TAAAATT-CCAA
1 TTTTAACCCCG-AT-TTTACCAAAATTACC-A
37052477 TTTTAACCCCGATTTTACCAAAATTACCA
1 TTTTAACCCCGATTTTACCAAAATTACCA
37052506 TTTT
1 TTTT
37052510 GCCCCCGGGT
Statistics
Matches: 100, Mismatches: 6, Indels: 29
0.74 0.04 0.21
Matches are distributed among these distances:
26 3 0.03
27 5 0.05
28 13 0.13
29 44 0.44
30 25 0.25
31 4 0.04
32 6 0.06
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (29 bp):
TTTTAACCCCGATTTTACCAAAATTACCA
Found at i:37052411 original size:58 final size:57
Alignment explanation
Indices: 37052321--37052516 Score: 277
Period size: 58 Copynumber: 3.4 Consensus size: 57
37052311 AAAACTTTCA
* * * * *
37052321 AAAATTA-CATTTTAACCCCTAAACTTTCTTAAATCCCATTTTTAACCCCGATTTTACC
1 AAAATTACCATTTTACCCCCGAATCTTT-TAAAATTCCA-TTTTAACCCCGATTTTACC
*
37052379 AAAATTTACCATTTTACCCTCGAATCTTTTAAAATTCCATTTTAACCCCGATTTTACC
1 AAAA-TTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTAACCCCGATTTTACC
37052437 AAAAATTACCATTTTACCCCCGAATCTTTTAAAATTCCAATTTTAACCCCGATTTTACC
1 -AAAATTACCATTTTACCCCCGAATCTTTTAAAATTCC-ATTTTAACCCCGATTTTACC
*
37052496 AAAATTACCATTTTGCCCCCG
1 AAAATTACCATTTTACCCCCG
37052517 GGTATCCATA
Statistics
Matches: 126, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
58 75 0.60
59 35 0.28
60 16 0.13
ACGTcount: A:0.32, C:0.28, G:0.04, T:0.37
Consensus pattern (57 bp):
AAAATTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTAACCCCGATTTTACC
Found at i:37055407 original size:25 final size:23
Alignment explanation
Indices: 37055366--37055411 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
37055356 TCAATTAGGG
37055366 AATTATTGTTTAGATTTAATTCA
1 AATTATTGTTTAGATTTAATTCA
*
37055389 AATTATCTTTTTAGAATTTAATT
1 AATTAT-TGTTTAG-ATTTAATT
37055412 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (23 bp):
AATTATTGTTTAGATTTAATTCA
Found at i:37061993 original size:3 final size:3
Alignment explanation
Indices: 37061985--37062009 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
37061975 GATCTACATA
37061985 ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG A
37062010 CGACAACGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:37076654 original size:96 final size:96
Alignment explanation
Indices: 37076536--37077025 Score: 642
Period size: 96 Copynumber: 5.1 Consensus size: 96
37076526 GAACATTTTG
* * * * *
37076536 TATCTTCTCAATGTTTGAGTTATCACCATTTGGTAGATTTTGTAACCTTGGGCTAACTCTAGCAT
1 TATCTTCTCATTGTTGGAGTTATCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
** ** *
37076601 TTGACATCTTTCTTGAGTCAGTTGCATCCCA
66 TTGATGTCTTTCTTGAGGGAGTTGCATCCCT
* * * * * * * *
37076632 TATCGTCTCAATGGTT-GCGTTATCAACATTTGGTACATTTTGGAACCTTGGCCTAACTCTAGTA
1 TATCTTCTC-ATTGTTGGAGTTATCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTA
** * *
37076696 TTTGATGTCTTTAGTGAGAGAGCTGCATCCCT
65 TTTGATGTCTTTCTTGAGGGAGTTGCATCCCT
*
37076728 TATCTTCTCATTGTTGGAGTTATCACCATTAGGTAGATTTTGGAACCTTGGGCTAACTCTAGTAT
1 TATCTTCTCATTGTTGGAGTTATCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
* *
37076793 TAGATGTCTTTGTTGAGGGAGTTGCATCCCT
66 TTGATGTCTTTCTTGAGGGAGTTGCATCCCT
* *
37076824 TTTCTTCTCATTGTTGGAGTTAACACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
1 TATCTTCTCATTGTTGGAGTTATCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
*
37076889 TTGATGTCTTTGTTGAGGGAGTTGCATCCCT
66 TTGATGTCTTTCTTGAGGGAGTTGCATCCCT
* *
37076920 TTTCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
1 TATCTTCTCATTGTTGGAGTTATCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
* * * *
37076985 TTGATGCCGTTCTTGAGTCG-GTTGCATCCCA
66 TTGATGTCTTTCTTGAG-GGAGTTGCATCCCT
37077016 TATCTTCTCA
1 TATCTTCTCA
37077026 ATATTTGGTA
Statistics
Matches: 351, Mismatches: 40, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
95 5 0.01
96 341 0.97
97 5 0.01
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (96 bp):
TATCTTCTCATTGTTGGAGTTATCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
TTGATGTCTTTCTTGAGGGAGTTGCATCCCT
Found at i:37076819 original size:192 final size:189
Alignment explanation
Indices: 37076536--37077190 Score: 843
Period size: 192 Copynumber: 3.5 Consensus size: 189
37076526 GAACATTTTG
* * * * * *
37076536 TATCTTCTCAATGTTTGAGTTATCACCATTTGGTAGATTTTGTAACCTTGGGCTAACTCTAGCAT
1 TATCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
**
37076601 TTGACATCTTTCTTGAGTCAGTTGCATCCCATATCGTCTCAATGGTTGCGTTATCAACATTTGGT
66 TTGATGTCTTTCTTGAGTCAGTTGCATCCCATATC-TCTC-AT-GTTGCGTTATCAACATTTGGT
* * *
37076666 ACATTTTGGAACCTTGGCCTAACTCTAGTATTTGATGTCTTTAG-TGAGAGAGCTGCATCCCT
128 AGATTTTGGAACCTTGGGCTAACTCTAGTATTTGATGTCTTT-GTTGAGAGAGTTGCATCCCT
* *
37076728 TATCTTCTCATTGTTGGAGTTATCACCATTAGGTAGATTTTGGAACCTTGGGCTAACTCTAGTAT
1 TATCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
* * ** * * * * * *
37076793 TAGATGTCTTTGTTGAGGGAGTTGCATCCCTTTTCTTCTCATTGTTGGAGTTAACACCATTAGGT
66 TTGATGTCTTTCTTGAGTCAGTTGCATCCCATATC-TCTCA-TGTT-GCGTTATCAACATTTGGT
* *
37076858 AGATTTTGAAACCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAGGGAGTTGCATCCCT
128 AGATTTTGGAACCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAGAGAGTTGCATCCCT
*
37076920 TTTCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
1 TATCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
* * * *
37076985 TTGATGCCGTTCTTGAGTCGGTTGCATCCCATA----TC---TT-C----TCAATATTTGGTAGA
66 TTGATGTCTTTCTTGAGTCAGTTGCATCCCATATCTCTCATGTTGCGTTATCAACATTTGGTAGA
*
37077038 TTTT-GAAGCCTTGGGCTAGCTCTAGTATTTGATGTCTTTGTTGAGAGAGTTGCATCCCT
131 TTTTGGAA-CCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAGAGAGTTGCATCCCT
* *
37077097 TTTCTTCTCATTGTTGGACTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
1 TATCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
37077162 TTGATGTCTTTCTTGAGTCAGTTGCATCC
66 TTGATGTCTTTCTTGAGTCAGTTGCATCC
37077191 TGCATCTTCT
Statistics
Matches: 412, Mismatches: 47, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
176 2 0.00
177 154 0.37
183 2 0.00
187 2 0.00
191 5 0.01
192 247 0.60
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (189 bp):
TATCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
TTGATGTCTTTCTTGAGTCAGTTGCATCCCATATCTCTCATGTTGCGTTATCAACATTTGGTAGA
TTTTGGAACCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAGAGAGTTGCATCCCT
Found at i:37077090 original size:81 final size:81
Alignment explanation
Indices: 37076951--37077106 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
37076941 ACCACCATTA
*
37076951 GGTAGATTTTGAAACCTTGGGCTAACTCTAGTATTTGATGCCGTTCTTGAGTCGGTTGCATCCCA
1 GGTAGATTTTGAAACCTTGGGCTAACTCTAGTATTTGATGCCGTTCTTGAGTAGGTTGCATCCCA
37077016 TATCTTCTCAATATTT
66 TATCTTCTCAATATTT
* * * * *
37077032 GGTAGATTTTGAAGCCTTGGGCTAGCTCTAGTATTTGATGTCTTTGTTGAG-AGAGTTGCATCCC
1 GGTAGATTTTGAAACCTTGGGCTAACTCTAGTATTTGATGCCGTTCTTGAGTAG-GTTGCATCCC
* *
37077096 TTTTCTTCTCA
65 ATATCTTCTCA
37077107 TTGTTGGACT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (81 bp):
GGTAGATTTTGAAACCTTGGGCTAACTCTAGTATTTGATGCCGTTCTTGAGTAGGTTGCATCCCA
TATCTTCTCAATATTT
Found at i:37077269 original size:177 final size:177
Alignment explanation
Indices: 37076855--37077259 Score: 661
Period size: 177 Copynumber: 2.3 Consensus size: 177
37076845 AACACCATTA
* *
37076855 GGTAGATTTTGAAACCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAGGGAGTTGCATCCCT
1 GGTAGATTTTGGAACCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAGAGAGTTGCATCCCT
*
37076920 TTTCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
66 TTTCTTCTCATTGTTGGACTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
* *
37076985 TTGATGCCGTTCTTGAGTCGGTTGCATCCCATATCTTCTCAATATTT
131 TTGATGCCGTTCTTGAGTCAGTTGCATCCCACATCTTCTCAATATTT
*
37077032 GGTAGATTTT-GAAGCCTTGGGCTAGCTCTAGTATTTGATGTCTTTGTTGAGAGAGTTGCATCCC
1 GGTAGATTTTGGAA-CCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAGAGAGTTGCATCCC
37077096 TTTTCTTCTCATTGTTGGACTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTA
65 TTTTCTTCTCATTGTTGGACTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTA
* * **
37077161 TTTGATGTCTTTCTTGAGTCAGTTGCATCCTGCATCTTCTCAA-ATTTT
130 TTTGATGCCGTTCTTGAGTCAGTTGCATCCCACATCTTCTCAATA-TTT
* * *
37077209 GGTAGATTTTGGAACCTCGGGCTAACTCTAGTATTTGATATCTTTGCTGAG
1 GGTAGATTTTGGAACCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAG
37077260 TCCGTTGCAT
Statistics
Matches: 211, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
176 3 0.01
177 205 0.97
178 3 0.01
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.40
Consensus pattern (177 bp):
GGTAGATTTTGGAACCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAGAGAGTTGCATCCCT
TTTCTTCTCATTGTTGGACTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTAT
TTGATGCCGTTCTTGAGTCAGTTGCATCCCACATCTTCTCAATATTT
Found at i:37077340 original size:69 final size:69
Alignment explanation
Indices: 37077229--37077363 Score: 200
Period size: 69 Copynumber: 2.0 Consensus size: 69
37077219 GGAACCTCGG
* *
37077229 GCTAACTCTAGTATTTGATATCTTTGCTGAGTCCGTTGCATTCCGTATCTTCACAATCTTTGAGT
1 GCTAACTCTAGTATTTGATATCTTTCCAGAGTCCGTTGCATTCCGTATCTTCACAATCTTTGAGT
37077294 TAGA
66 TAGA
* * * *
37077298 GCTAACTCTAGTATTTGATGTCTTTCCAGAG-CCAGTTGCATTCCTTATCTTCTCAATGTTTGAG
1 GCTAACTCTAGTATTTGATATCTTTCCAGAGTCC-GTTGCATTCCGTATCTTCACAATCTTTGAG
37077362 TT
65 TT
37077364 CCCAACTTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
68 2 0.03
69 57 0.97
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.41
Consensus pattern (69 bp):
GCTAACTCTAGTATTTGATATCTTTCCAGAGTCCGTTGCATTCCGTATCTTCACAATCTTTGAGT
TAGA
Found at i:37077443 original size:96 final size:96
Alignment explanation
Indices: 37077298--37077498 Score: 258
Period size: 96 Copynumber: 2.1 Consensus size: 96
37077288 TTGAGTTAGA
* * * * *
37077298 GCTAACTCTAGTATTTGATGTCTTTCCAGAGCCAGTTGCATTCCTTATCTTCTCAATGTTTGAGT
1 GCTAACTCTAGTATTTAATGTCTTTCCAGAGCCAGTTGCAATCCATATCTTCTCAATGTTCGAGC
* *
37077363 TCCCAACTTTTAGTAAATTTTGAAACCTTGG
66 TACCAACGTTTAGTAAATTTTGAAACCTTGG
* ** **
37077394 GCTAACTCTAGTATTTAATGTGTTTCTTGATTCAGTTGCAATCCATATCTTCTCAATGTTCGAGC
1 GCTAACTCTAGTATTTAATGTCTTTCCAGAGCCAGTTGCAATCCATATCTTCTCAATGTTCGAGC
* * *
37077459 TACCACCGTTTGGTAGATTTTGAAACCTTGG
66 TACCAACGTTTAGTAAATTTTGAAACCTTGG
*
37077490 ACTAACTCT
1 GCTAACTCT
37077499 TCGCTGTATT
Statistics
Matches: 89, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 89 1.00
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (96 bp):
GCTAACTCTAGTATTTAATGTCTTTCCAGAGCCAGTTGCAATCCATATCTTCTCAATGTTCGAGC
TACCAACGTTTAGTAAATTTTGAAACCTTGG
Found at i:37088117 original size:3 final size:3
Alignment explanation
Indices: 37088111--37088136 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
37088101 AATAGTAGTC
37088111 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
37088137 GTTAGATAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:37090093 original size:14 final size:14
Alignment explanation
Indices: 37090074--37090102 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37090064 AAGCGACTAC
37090074 AGGCTCGTCAAGAG
1 AGGCTCGTCAAGAG
37090088 AGGCTCGTCAAGAG
1 AGGCTCGTCAAGAG
37090102 A
1 A
37090103 CGAGAATGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.21, G:0.34, T:0.14
Consensus pattern (14 bp):
AGGCTCGTCAAGAG
Found at i:37109634 original size:20 final size:20
Alignment explanation
Indices: 37109609--37109651 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
37109599 ATTTGATTCG
37109609 AAATTTGA-TCTTATATAATA
1 AAATTTGACT-TTATATAATA
*
37109629 AAATTTGACTTTATATGATA
1 AAATTTGACTTTATATAATA
37109649 AAA
1 AAA
37109652 GGGGATAGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.42
Consensus pattern (20 bp):
AAATTTGACTTTATATAATA
Found at i:37116496 original size:18 final size:20
Alignment explanation
Indices: 37116473--37116516 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
37116463 AAATAAGTTG
37116473 TTATTAA-AA-TTTAAAATA
1 TTATTAACAACTTTAAAATA
37116491 TTATTAACAACTTTAAAATA
1 TTATTAACAACTTTAAAATA
*
37116511 TCATTA
1 TTATTA
37116517 CGTGATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 2 0.09
20 14 0.61
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (20 bp):
TTATTAACAACTTTAAAATA
Found at i:37117005 original size:17 final size:16
Alignment explanation
Indices: 37116983--37117014 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
37116973 TTTCCAGTCG
37116983 TAATTAATTTAAATTTT
1 TAATTAA-TTAAATTTT
37117000 TAATTAATTAAATTT
1 TAATTAATTAAATTT
37117015 ATTTAATTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TAATTAATTAAATTTT
Found at i:37118002 original size:23 final size:24
Alignment explanation
Indices: 37117953--37118002 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
37117943 AGTTTCAATT
* *
37117953 AAATAAATTATTTAAAATTCATAA
1 AAATAAAATATTAAAAATTCATAA
37117977 AAATAAAATATTAAAAATAT-ATAA
1 AAATAAAATATTAAAAAT-TCATAA
37118001 AA
1 AA
37118003 CCAATATTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (24 bp):
AAATAAAATATTAAAAATTCATAA
Found at i:37121904 original size:22 final size:22
Alignment explanation
Indices: 37121879--37121926 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
37121869 AGGTACTTAA
37121879 TCTTCATTTTTTAGCTTTAATC
1 TCTTCATTTTTTAGCTTTAATC
* * *
37121901 TCTTCGTTTTTTATCTTTAATT
1 TCTTCATTTTTTAGCTTTAATC
37121923 TCTT
1 TCTT
37121927 GGGTTCCTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.17, G:0.04, T:0.65
Consensus pattern (22 bp):
TCTTCATTTTTTAGCTTTAATC
Found at i:37124574 original size:9 final size:9
Alignment explanation
Indices: 37124557--37124593 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
37124547 CGAGTTATTG
*
37124557 AATTTGAAT
1 AATTCGAAT
37124566 AATTCGAAT
1 AATTCGAAT
37124575 AATTCGAAT
1 AATTCGAAT
*
37124584 AAATCGAAT
1 AATTCGAAT
37124593 A
1 A
37124594 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:37126288 original size:24 final size:25
Alignment explanation
Indices: 37126238--37126294 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
37126228 ACTTACTAAT
* * *
37126238 TTTAAATGTATATATATTTAGTAAA
1 TTTAAATTTAAATATATTTAATAAA
*
37126263 TTTAAATTTAAAT-TATTTAATTAA
1 TTTAAATTTAAATATATTTAATAAA
*
37126287 TTTGAATT
1 TTTAAATT
37126295 CTGGATAACA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (25 bp):
TTTAAATTTAAATATATTTAATAAA
Found at i:37131917 original size:29 final size:31
Alignment explanation
Indices: 37131873--37132211 Score: 176
Period size: 30 Copynumber: 11.5 Consensus size: 31
37131863 GGGCGGGGGC
*
37131873 AAAATGGTAATTTTTGGTGAAACCGGGGTTA
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTA
*
37131904 AAAATGG-AA-TTTT-G-GAAAGTTCGGGGGT-
1 AAAATGGTAATTTTTGGTGAAA--TCGGGGTTA
*
37131932 AAAATGGTAATTTTTGATGAAATCGGGGTTA
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTA
* *
37131963 AAAATGG-AA-TTTT-G-GAAAGTTTAGAGG-T-
1 AAAATGGTAATTTTTGGTGAAA---TCGGGGTTA
* *
37131991 AAGATGGTAATTTTTTGTGAAATCGGGGTTA
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTA
*
37132022 AAAATAGG--A-TTTT-G-GAAAGTTCGGGGGT-
1 AAAAT-GGTAATTTTTGGTGAAA--TCGGGGTTA
* * * *
37132050 AAAACGGTAATTTTTGATGAGATTGGGGTTA
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTA
* *
37132081 AAAATGG-AA-TTTT-G-GAAAGTTTGGGGGT-
1 AAAATGGTAATTTTTGGTGAAA--TCGGGGTTA
* *
37132109 AAAATGGTAATTTTTGATGAAATTGGGGTTA
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTA
*
37132140 AAAATGG-AA-TTTT-G-GAAAGTTCGGGGGT-
1 AAAATGGTAATTTTTGGTGAAA--TCGGGGTTA
* * * *
37132168 AAAATGGTAAATTTTGATGAAACCGGGGTTT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTA
*
37132199 AAAATCG-AATTTT
1 AAAATGGTAATTTT
37132212 GGAAAGTTTA
Statistics
Matches: 238, Mismatches: 31, Indels: 79
0.68 0.09 0.23
Matches are distributed among these distances:
27 21 0.09
28 33 0.14
29 60 0.25
30 65 0.27
31 38 0.16
32 21 0.09
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.33
Consensus pattern (31 bp):
AAAATGGTAATTTTTGGTGAAATCGGGGTTA
Found at i:37131929 original size:59 final size:59
Alignment explanation
Indices: 37131866--37132239 Score: 554
Period size: 59 Copynumber: 6.3 Consensus size: 59
37131856 TTTAGACGGG
* * *
37131866 CGGGGGCAAAATGGTAATTTTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT
37131925 CGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT
** * *
37131984 TAGAGGTAAGATGGTAATTTTTTG-TGAAATCGGGGTTAAAAATAGG-ATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAA-TTTTTGATGAAATCGGGGTTAAAAAT-GGAATTTTGGAAAGTT
* * *
37132043 CGGGGGTAAAACGGTAATTTTTGATGAGATTGGGGTTAAAAATGGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT
* *
37132102 TGGGGGTAAAATGGTAATTTTTGATGAAATTGGGGTTAAAAATGGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT
* * * *
37132161 CGGGGGTAAAATGGTAAATTTTGATGAAACCGGGGTTTAAAATCGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT
**
37132220 TAGGGGTAAAATGGTAATTT
1 CGGGGGTAAAATGGTAATTT
37132240 CGGACAGTCC
Statistics
Matches: 285, Mismatches: 26, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
58 8 0.03
59 269 0.94
60 8 0.03
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.33
Consensus pattern (59 bp):
CGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTT
Found at i:37134193 original size:17 final size:16
Alignment explanation
Indices: 37134171--37134237 Score: 89
Period size: 17 Copynumber: 4.0 Consensus size: 16
37134161 TTTTAATTCA
*
37134171 AAATAAATTCAAATTT
1 AAATAAATTTAAATTT
37134187 AACATAAATTTAAATTCT
1 AA-ATAAATTTAAATT-T
*
37134205 AAATGAATTTAAATTT
1 AAATAAATTTAAATTT
37134221 AAAATAAATTTAAATTT
1 -AAATAAATTTAAATTT
37134238 TAAAATAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
16 3 0.07
17 39 0.87
18 3 0.07
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.40
Consensus pattern (16 bp):
AAATAAATTTAAATTT
Found at i:37134219 original size:34 final size:34
Alignment explanation
Indices: 37134160--37134246 Score: 111
Period size: 34 Copynumber: 2.5 Consensus size: 34
37134150 ATATTTAAAC
* * *
37134160 ATTTTAATTCAAAATAAATTCAAATTTAACATAA
1 ATTTAAATTCTAAATAAATTCAAATTTAAAATAA
* *
37134194 ATTTAAATTCTAAATGAATTTAAATTTAAAATAA
1 ATTTAAATTCTAAATAAATTCAAATTTAAAATAA
*
37134228 ATTTAAATTTTAAAATAAA
1 ATTTAAATTCT-AAATAAA
37134247 CTAAGGTTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 39 0.87
35 6 0.13
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.40
Consensus pattern (34 bp):
ATTTAAATTCTAAATAAATTCAAATTTAAAATAA
Found at i:37144510 original size:30 final size:30
Alignment explanation
Indices: 37144475--37144557 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
37144465 AAAATTCTAC
* * *
37144475 AAAGTATAAATACTAAATTTGACCAATTCA
1 AAAGTACAAAGACTAAAATTGACCAATTCA
**
37144505 AAAGTACATGGACTAAAATTGACCAATTCAA
1 AAAGTACAAAGACTAAAATTGACCAATTC-A
* * *
37144536 AAACTATAAGGACTAAAATTGA
1 AAAGTACAAAGACTAAAATTGA
37144558 TCAAATTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 24 0.55
31 20 0.45
ACGTcount: A:0.51, C:0.13, G:0.11, T:0.25
Consensus pattern (30 bp):
AAAGTACAAAGACTAAAATTGACCAATTCA
Found at i:37144556 original size:31 final size:30
Alignment explanation
Indices: 37144486--37144557 Score: 99
Period size: 31 Copynumber: 2.4 Consensus size: 30
37144476 AAGTATAAAT
* * *
37144486 ACTAAATTTGACCAATTCAAAAGTACATGG
1 ACTAAAATTGACCAATTCAAAACTACAAGG
*
37144516 ACTAAAATTGACCAATTCAAAAACTATAAGG
1 ACTAAAATTGACCAATTC-AAAACTACAAGG
37144547 ACTAAAATTGA
1 ACTAAAATTGA
37144558 TCAAATTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 17 0.46
31 20 0.54
ACGTcount: A:0.49, C:0.15, G:0.11, T:0.25
Consensus pattern (30 bp):
ACTAAAATTGACCAATTCAAAACTACAAGG
Found at i:37144800 original size:20 final size:20
Alignment explanation
Indices: 37144775--37144812 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37144765 TATGTTTGAA
37144775 ATGTTA-CGTTTTAGTTACTT
1 ATGTTATCGTTTT-GTTACTT
37144795 ATGTTATCGTTTTGTTAC
1 ATGTTATCGTTTTGTTAC
37144813 AAAATAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.18, C:0.11, G:0.16, T:0.55
Consensus pattern (20 bp):
ATGTTATCGTTTTGTTACTT
Found at i:37149091 original size:21 final size:21
Alignment explanation
Indices: 37149067--37149108 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37149057 TTTAAAAAGT
*
37149067 TATTAGATTAAAAAAGTTAAA
1 TATTAGATTAAAAAAATTAAA
**
37149088 TATTATTTTAAAAAAATTAAA
1 TATTAGATTAAAAAAATTAAA
37149109 AGCATACTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (21 bp):
TATTAGATTAAAAAAATTAAA
Found at i:37149493 original size:28 final size:29
Alignment explanation
Indices: 37149444--37149508 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
37149434 GTAACATAGC
* *
37149444 TTAAGTATTACTTATGATAAAAA-AAAAA
1 TTAAGTATAACTTAAGATAAAAATAAAAA
* *
37149472 TTAAGTATCAACTTAAGA-AAAAATATAAT
1 TTAAGTAT-AACTTAAGATAAAAATAAAAA
37149501 TTAAGTAT
1 TTAAGTAT
37149509 TATTTTATAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 13 0.42
29 18 0.58
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.34
Consensus pattern (29 bp):
TTAAGTATAACTTAAGATAAAAATAAAAA
Found at i:37149588 original size:17 final size:17
Alignment explanation
Indices: 37149562--37149608 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
37149552 TAATAAATTC
*
37149562 TTATTTATTAAA-AAATA
1 TTATTAATTAAATAAA-A
37149579 TTATTAATTAAATAAAA
1 TTATTAATTAAATAAAA
37149596 TT-TTATATTAAAT
1 TTATTA-ATTAAAT
37149609 TTGAGAATCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 3 0.11
17 21 0.78
18 3 0.11
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTATTAATTAAATAAAA
Found at i:37150669 original size:2 final size:2
Alignment explanation
Indices: 37150662--37150709 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
37150652 AGTATTCCAA
37150662 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37150704 AT AT AT
1 AT AT AT
37150710 TATCATAACG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37155673 original size:4 final size:5
Alignment explanation
Indices: 37155651--37155685 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
37155641 TTGAAAAATC
*
37155651 TTAAT TTAAT TTAAT TT-AT TTATT TTAAT TTAAT T
1 TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT T
37155686 CTATTTTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (5 bp):
TTAAT
Found at i:37155677 original size:14 final size:15
Alignment explanation
Indices: 37155651--37155692 Score: 59
Period size: 14 Copynumber: 2.8 Consensus size: 15
37155641 TTGAAAAATC
*
37155651 TTAATTTAATTTAAT
1 TTAATTTATTTTAAT
37155666 TT-ATTTATTTTAAT
1 TTAATTTATTTTAAT
37155680 TTAATTCTATTTT
1 TTAATT-TATTTT
37155693 TCACAAAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 13 0.54
15 5 0.21
16 6 0.25
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
TTAATTTATTTTAAT
Found at i:37159112 original size:52 final size:52
Alignment explanation
Indices: 37159027--37159149 Score: 149
Period size: 52 Copynumber: 2.3 Consensus size: 52
37159017 TTCCTGTTCC
* * * *
37159027 GTAAAGGAACTCATGTACTCACGATGACACTTAGTCATCGGACCTCACAATCCA
1 GTAAAGG-ATTCATATACTCACAATGACACTTAGCCATCGGACCTCACAAT-CA
* * *
37159081 -TAAAGGATTCATATACTCACAATGACACTTAGCCATCGTACCTTATAATCA
1 GTAAAGGATTCATATACTCACAATGACACTTAGCCATCGGACCTCACAATCA
*
37159132 GTAAAGGATTCATTTACT
1 GTAAAGGATTCATATACT
37159150 TACGATTCAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
51 2 0.03
52 52 0.87
53 6 0.10
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.28
Consensus pattern (52 bp):
GTAAAGGATTCATATACTCACAATGACACTTAGCCATCGGACCTCACAATCA
Found at i:37159221 original size:85 final size:85
Alignment explanation
Indices: 37159075--37159240 Score: 244
Period size: 85 Copynumber: 2.0 Consensus size: 85
37159065 CGGACCTCAC
*
37159075 AATCCATAAAGGATTCATATACTCACAATGACACTTAGCCATCGTACCTTATAATCAGTAAAGGA
1 AATCCATAAAGGATTCATATACTCACAATGACACTTAGCCATCGTACCTCATAATCAGTAAAGGA
*
37159140 TTCATTTACTTACGATTCAT
66 TTCATTTACTCACGATTCAT
* * ** * *
37159160 AATCCGTAAAGGATTCATTTACTCATGATGACACTTAGTCATCAG-ACCTCATAATCTGTAAAGG
1 AATCCATAAAGGATTCATATACTCACAATGACACTTAGCCATC-GTACCTCATAATCAGTAAAGG
37159224 ATTCATTTACTCACGAT
65 ATTCATTTACTCACGAT
37159241 GACACTTAGT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 71 0.99
86 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (85 bp):
AATCCATAAAGGATTCATATACTCACAATGACACTTAGCCATCGTACCTCATAATCAGTAAAGGA
TTCATTTACTCACGATTCAT
Found at i:37159234 original size:52 final size:52
Alignment explanation
Indices: 37159156--37159260 Score: 192
Period size: 52 Copynumber: 2.0 Consensus size: 52
37159146 TACTTACGAT
*
37159156 TCATAATCCGTAAAGGATTCATTTACTCATGATGACACTTAGTCATCAGACC
1 TCATAATCCGTAAAGGATTCATTTACTCACGATGACACTTAGTCATCAGACC
*
37159208 TCATAATCTGTAAAGGATTCATTTACTCACGATGACACTTAGTCATCAGACC
1 TCATAATCCGTAAAGGATTCATTTACTCACGATGACACTTAGTCATCAGACC
37159260 T
1 T
37159261 TTTTCATTTA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.31
Consensus pattern (52 bp):
TCATAATCCGTAAAGGATTCATTTACTCACGATGACACTTAGTCATCAGACC
Found at i:37164944 original size:28 final size:29
Alignment explanation
Indices: 37164913--37164980 Score: 70
Period size: 28 Copynumber: 2.4 Consensus size: 29
37164903 TTTTTTTATA
37164913 TTTTAATATAAGAT-TTT-ATACATTAATT
1 TTTTAATATAAGATATTTCATACA-TAATT
* * *
37164941 TTTTTATA-AATATATTTCTTACATAATT
1 TTTTAATATAAGATATTTCATACATAATT
37164969 TTTTAATTATAA
1 TTTTAA-TATAA
37164981 TTTGTTATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
27 4 0.12
28 20 0.62
29 6 0.19
30 2 0.06
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.56
Consensus pattern (29 bp):
TTTTAATATAAGATATTTCATACATAATT
Found at i:37175880 original size:3 final size:3
Alignment explanation
Indices: 37175854--37175904 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
37175844 TGGGCAGTAA
* * * * *
37175854 AAG AAA AAG AAT AAG TAG -AG AAG AAG AAG AAA AAG AAG AAG AGG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
37175901 AAG A
1 AAG A
37175905 GAAAAATTCT
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.67, C:0.00, G:0.29, T:0.04
Consensus pattern (3 bp):
AAG
Found at i:37178744 original size:24 final size:23
Alignment explanation
Indices: 37178695--37178745 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
37178685 TTTTAATTTT
*
37178695 TTTTAAATATTTATATTATATTA
1 TTTTAAATATTTATATTATATAA
*
37178718 TTTT-AATATTTAATAATTTTATAA
1 TTTTAAATATTT-AT-ATTATATAA
37178742 TTTT
1 TTTT
37178746 TCATTTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.29
23 6 0.25
24 11 0.46
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTTAAATATTTATATTATATAA
Found at i:37193794 original size:11 final size:11
Alignment explanation
Indices: 37193759--37193794 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
37193749 TTTTTCAGTC
37193759 ATTTCGTTATT
1 ATTTCGTTATT
*
37193770 ATATCGTTATT
1 ATTTCGTTATT
*
37193781 ATTTTGTTATT
1 ATTTCGTTATT
37193792 ATT
1 ATT
37193795 GCTTGTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.22, C:0.06, G:0.08, T:0.64
Consensus pattern (11 bp):
ATTTCGTTATT
Found at i:37193992 original size:14 final size:15
Alignment explanation
Indices: 37193960--37193992 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
37193950 AATGTATTTG
37193960 ATATATTATATTTTT
1 ATATATTATATTTTT
37193975 -TATATT-TATTTTT
1 ATATATTATATTTTT
37193988 ATATA
1 ATATA
37193993 AAAAGAATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
ATATATTATATTTTT
Done.