Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 132 of 135
Found at i:40570610 original size:8 final size:8
Alignment explanation
Indices: 40570596--40570634 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
40570586 ATTGTTTAAC
40570596 AATTATAA
1 AATTATAA
*
40570604 AAATAT-A
1 AATTATAA
40570611 AATTATTAA
1 AATTA-TAA
40570620 AATTATAA
1 AATTATAA
40570628 AATTATA
1 AATTATA
40570635 TTTTTATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 5 0.19
8 16 0.59
9 6 0.22
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
AATTATAA
Found at i:40572090 original size:126 final size:123
Alignment explanation
Indices: 40571864--40572104 Score: 313
Period size: 126 Copynumber: 1.9 Consensus size: 123
40571854 TTTAAAAGTC
* *
40571864 AAGTAAGTAAATGGTGTATTGACAAAACAAAATAAAAAGCCTAGTCCCGATTTAAGTCATTCGGG
1 AAGTAAGTAAATGGTGTATTGACAAAAAAAAATAAAAAGCCTAGTCCCGATTTAAATCATTCGGG
* * * **
40571929 TTCAATTCCAAGACAACTTTTTTTTGTGCAGAGTAAAAAATTAAAAAAATATATTTAA
66 TTCAATTCCAAGACAACCTTTGTTCGTGCAGAGTAAAAAAGGAAAAAAATATATTTAA
* * *
40571987 AAGTCAAGTAAATGGTGTATTGTCTAAAATAAAAATAAAAAGCCTCGTGCCGATTTAAATCAATT
1 AAGT-AAGTAAATGGTGTATTGAC-AAAA-AAAAATAAAAAGCCTAGTCCCGATTTAAATC-ATT
** * *
40572052 -GGGTTCAATTCTTAGACAACCTTTGTTCGTGTATAGTAAAAAAGGAAAAAAAT
62 CGGGTTCAATTCCAAGACAACCTTTGTTCGTGCAGAGTAAAAAAGGAAAAAAAT
40572105 TAAATAAATA
Statistics
Matches: 100, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
123 4 0.04
124 18 0.18
125 4 0.04
126 71 0.71
127 3 0.03
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (123 bp):
AAGTAAGTAAATGGTGTATTGACAAAAAAAAATAAAAAGCCTAGTCCCGATTTAAATCATTCGGG
TTCAATTCCAAGACAACCTTTGTTCGTGCAGAGTAAAAAAGGAAAAAAATATATTTAA
Found at i:40577902 original size:2 final size:2
Alignment explanation
Indices: 40577895--40577930 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
40577885 GAGCTTTTTG
40577895 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
40577931 GATCAAAGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:40607245 original size:25 final size:22
Alignment explanation
Indices: 40607188--40607255 Score: 136
Period size: 22 Copynumber: 3.1 Consensus size: 22
40607178 GCATATCAAT
40607188 TTCTTGGCAACAACAACTATAC
1 TTCTTGGCAACAACAACTATAC
40607210 TTCTTGGCAACAACAACTATAC
1 TTCTTGGCAACAACAACTATAC
40607232 TTCTTGGCAACAACAACTATAC
1 TTCTTGGCAACAACAACTATAC
40607254 TT
1 TT
40607256 AGGCTTTGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.29
Consensus pattern (22 bp):
TTCTTGGCAACAACAACTATAC
Found at i:40611432 original size:16 final size:16
Alignment explanation
Indices: 40611389--40611426 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
40611379 CATTTGATTC
**
40611389 ATAATTAAATTTGATA
1 ATAATTAAAAATGATA
40611405 ATAATTAAAAATGATA
1 ATAATTAAAAATGATA
40611421 A-AATTA
1 ATAATTA
40611427 GTAAATAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (16 bp):
ATAATTAAAAATGATA
Found at i:40617333 original size:23 final size:24
Alignment explanation
Indices: 40617307--40617354 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
40617297 AAATTAATAT
* *
40617307 ATAATACTAATATAATTAT-TAAA
1 ATAATACTAAGATAACTATATAAA
*
40617330 ATAATATTAAGATAACTATATAAA
1 ATAATACTAAGATAACTATATAAA
40617354 A
1 A
40617355 ATTTTCAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.35
Consensus pattern (24 bp):
ATAATACTAAGATAACTATATAAA
Found at i:40617428 original size:31 final size:30
Alignment explanation
Indices: 40617375--40617432 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
40617365 AATAAAATTG
* *
40617375 TATAAATTTATTAAATATTAAAATAATATAA
1 TATAAATTTATTAAAAAATAAAA-AATATAA
40617406 TATAAATATT-TTAAAAAATAAAAAATA
1 TATAAAT-TTATTAAAAAATAAAAAATA
40617433 ATATGGACGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 4 0.17
31 18 0.75
32 2 0.08
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (30 bp):
TATAAATTTATTAAAAAATAAAAAATATAA
Found at i:40619543 original size:18 final size:18
Alignment explanation
Indices: 40619520--40619554 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
40619510 TTTTATTTGT
* *
40619520 TATAAATTATATAACATG
1 TATAAATAACATAACATG
40619538 TATAAATAACATAACAT
1 TATAAATAACATAACAT
40619555 AATATAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (18 bp):
TATAAATAACATAACATG
Found at i:40623565 original size:16 final size:16
Alignment explanation
Indices: 40623545--40623575 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
40623535 AATTATTTCT
40623545 TTTTTTATT-TGTGAA
1 TTTTTTATTGTGTGAA
40623560 TTTTTTATTGTGTGAA
1 TTTTTTATTGTGTGAA
40623576 AGTTATATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.65
Consensus pattern (16 bp):
TTTTTTATTGTGTGAA
Found at i:40626450 original size:18 final size:18
Alignment explanation
Indices: 40626427--40626471 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
40626417 GTTTAACCAC
40626427 TAAAAAATAACTAAAAGT-
1 TAAAAAATAACTAAAA-TA
**
40626445 TAAAAAAGGACTAAAATA
1 TAAAAAATAACTAAAATA
40626463 TAAAAAATA
1 TAAAAAATA
40626472 GAAACATAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.69, C:0.04, G:0.07, T:0.20
Consensus pattern (18 bp):
TAAAAAATAACTAAAATA
Found at i:40629411 original size:58 final size:58
Alignment explanation
Indices: 40629312--40629442 Score: 149
Period size: 58 Copynumber: 2.3 Consensus size: 58
40629302 TATTAAAAAT
** **
40629312 ATAATTATATTAAAAATATTGTTAAATTATATATTAATTTATTAAATTGTATTTAATA
1 ATAATTATATTAAAAATATAATTAAATTATATATTAATTTATTAAATTAAATTTAATA
* * * *
40629370 ATAATTATGTT-AAAATATAATTAAATTGTTTATTATTTTTATTAAATTAAATTTAATA
1 ATAATTATATTAAAAATATAATTAAATTATATATTA-ATTTATTAAATTAAATTTAATA
*
40629428 ATGATCT-TATTAAAA
1 ATAAT-TATATTAAAA
40629443 TTTAATAACA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
57 20 0.33
58 36 0.60
59 4 0.07
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.50
Consensus pattern (58 bp):
ATAATTATATTAAAAATATAATTAAATTATATATTAATTTATTAAATTAAATTTAATA
Found at i:40638695 original size:4 final size:4
Alignment explanation
Indices: 40638686--40638769 Score: 80
Period size: 4 Copynumber: 20.2 Consensus size: 4
40638676 CCTCTCTCAG
* * * *
40638686 GTAT GTAT GTAT GTAT GTAT GTAT GCAT GTAT GTAT GGAT GTTT GTGT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
40638734 GT-T GTCAGT GTAT GTCAAT GTGT GTAT GTAT GTAT G
1 GTAT GT-A-T GTAT GT--AT GTAT GTAT GTAT GTAT G
40638770 AATGAATGAT
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
3 3 0.04
4 56 0.84
5 1 0.01
6 7 0.10
ACGTcount: A:0.20, C:0.04, G:0.30, T:0.46
Consensus pattern (4 bp):
GTAT
Found at i:40638965 original size:2 final size:2
Alignment explanation
Indices: 40638958--40639003 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
40638948 CTGTGGTAAG
* *
40638958 CA CA CA CA CA CG CA CA CA CG CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
40639000 CA CA
1 CA CA
40639004 TACATATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.46, C:0.50, G:0.04, T:0.00
Consensus pattern (2 bp):
CA
Found at i:40641032 original size:2 final size:2
Alignment explanation
Indices: 40641025--40641053 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
40641015 AATGTACCTG
40641025 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
40641054 GTTCCTTGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:40645219 original size:1 final size:1
Alignment explanation
Indices: 40645215--40645239 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
40645205 TTTAAATTTC
40645215 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
40645240 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:40645244 original size:2 final size:2
Alignment explanation
Indices: 40645239--40645281 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
40645229 AAAAAAAAAA
40645239 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
40645281 A
1 A
40645282 GTTAAAAGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:40648424 original size:17 final size:18
Alignment explanation
Indices: 40648399--40648433 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
40648389 CAATCAAGCT
*
40648399 ACCAGTTCAT-TGGTCCA
1 ACCAATTCATCTGGTCCA
40648416 ACCAATTCATCTGGTCCA
1 ACCAATTCATCTGGTCCA
40648434 TACTGGTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (18 bp):
ACCAATTCATCTGGTCCA
Found at i:40648622 original size:5 final size:5
Alignment explanation
Indices: 40648612--40648638 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
40648602 AGGTCTCGCC
40648612 TCACT TCACT TCACT TCACT TCACT TC
1 TCACT TCACT TCACT TCACT TCACT TC
40648639 CCTTGCCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.41, G:0.00, T:0.41
Consensus pattern (5 bp):
TCACT
Found at i:40649343 original size:20 final size:21
Alignment explanation
Indices: 40649318--40649356 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
40649308 ATATGAAGGA
40649318 AAAACATTAAGAA-TTTAATT
1 AAAACATTAAGAAGTTTAATT
*
40649338 AAAACATTTAGAAGTTTAA
1 AAAACATTAAGAAGTTTAA
40649357 AGATTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (21 bp):
AAAACATTAAGAAGTTTAATT
Found at i:40650168 original size:29 final size:30
Alignment explanation
Indices: 40650117--40650188 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 30
40650107 ATTTCAAATT
*
40650117 AATAATAATAAAATTACACTTTAATCTCTTAA
1 AATAATAA-AAATTTACACTTTAAT-TCTTAA
* *
40650149 AATAATAAAAATTTA-A-TTTAATTTTTTA
1 AATAATAAAAATTTACACTTTAATTCTTAA
*
40650177 AATTATAAAAAT
1 AATAATAAAAAT
40650189 ATATATTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 15 0.42
29 6 0.17
30 1 0.03
31 6 0.17
32 8 0.22
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (30 bp):
AATAATAAAAATTTACACTTTAATTCTTAA
Found at i:40651026 original size:77 final size:77
Alignment explanation
Indices: 40650899--40651054 Score: 303
Period size: 77 Copynumber: 2.0 Consensus size: 77
40650889 CAATTCCGAA
40650899 AATTAATAGGAATTATAAAGATGTTTTTACCAAAAAGGAAATTTATTTGCTGAATTTTGACATTT
1 AATTAATAGGAATTATAAAGATGTTTTTACCAAAAAGGAAATTTATTTGCTGAATTTTGACATTT
40650964 GATTGTTCCATT
66 GATTGTTCCATT
*
40650976 AATTAATAGGAATTATAAAGGTGTTTTTACCAAAAAGGAAATTTATTTGCTGAATTTTGACATTT
1 AATTAATAGGAATTATAAAGATGTTTTTACCAAAAAGGAAATTTATTTGCTGAATTTTGACATTT
40651041 GATTGTTCCATT
66 GATTGTTCCATT
40651053 AA
1 AA
40651055 ATCAGCAAAC
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.41
Consensus pattern (77 bp):
AATTAATAGGAATTATAAAGATGTTTTTACCAAAAAGGAAATTTATTTGCTGAATTTTGACATTT
GATTGTTCCATT
Found at i:40659261 original size:191 final size:191
Alignment explanation
Indices: 40658931--40659274 Score: 562
Period size: 191 Copynumber: 1.8 Consensus size: 191
40658921 ACCTGTCTCT
* * **
40658931 GACCACACTCGTGTCGAATACATATCATATTTAAAACCCACATCCAAGTTTGAGTAACATAGCCT
1 GACCACACTCGTGTCGAATACATACCATATCTAAAACCCACATCCAAGTTCAAGTAACATAGCCT
** * *
40658996 TAAAACCATATCTAACCCACAAAAATTTTATTATCATTGAAGGATCAAATAATAAACTACCAAGT
66 TAAAACCATATCTAACCCACAAAAATTGCATTATCATTGAAAGATCAAAAAATAAACTACCAAGT
*
40659061 TAGACATAAAATCAAACATGTAAGCATCAATACTTCAAACTCTAATCAGTAACTCATGTCG
131 TAGACATAAAACCAAACATGTAAGCATCAATACTTCAAACTCTAATCAGTAACTCATGTCG
* * *
40659122 GACCATACTCGTGTCGGATACATACCATATCTAAGACCCACATCCAAGTTCAAGTAACATAGCCT
1 GACCACACTCGTGTCGAATACATACCATATCTAAAACCCACATCCAAGTTCAAGTAACATAGCCT
* *
40659187 TAAAACCATATTTAACCCACAAAAATTGCATTATCATTGAAAGATCAAAAAATAAACTACTAAGT
66 TAAAACCATATCTAACCCACAAAAATTGCATTATCATTGAAAGATCAAAAAATAAACTACCAAGT
40659252 TAGACATAAAACCAAACATGTAA
131 TAGACATAAAACCAAACATGTAA
40659275 CCAACAACAC
Statistics
Matches: 139, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
191 139 1.00
ACGTcount: A:0.43, C:0.22, G:0.10, T:0.25
Consensus pattern (191 bp):
GACCACACTCGTGTCGAATACATACCATATCTAAAACCCACATCCAAGTTCAAGTAACATAGCCT
TAAAACCATATCTAACCCACAAAAATTGCATTATCATTGAAAGATCAAAAAATAAACTACCAAGT
TAGACATAAAACCAAACATGTAAGCATCAATACTTCAAACTCTAATCAGTAACTCATGTCG
Found at i:40660713 original size:2 final size:2
Alignment explanation
Indices: 40660706--40660735 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
40660696 ATTATTAATA
40660706 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
40660736 TTAAACGTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:40663598 original size:24 final size:23
Alignment explanation
Indices: 40663570--40663642 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 23
40663560 AATAATAAAA
40663570 ATATTTTAAAAATATTTTTAATT
1 ATATTTTAAAAATATTTTTAATT
* * *
40663593 GATATTTTATATACTCTTTTATAATT
1 -ATATTTTA-AAAATATTTT-TAATT
* *
40663619 A-AATTTAAAAATATTTTTTATT
1 ATATTTTAAAAATATTTTTAATT
40663641 AT
1 AT
40663643 TTAAATTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
22 5 0.13
23 7 0.18
24 13 0.34
25 8 0.21
26 5 0.13
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (23 bp):
ATATTTTAAAAATATTTTTAATT
Found at i:40681619 original size:18 final size:18
Alignment explanation
Indices: 40681598--40681639 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
40681588 TTGGTACTTA
40681598 AATTT-AATTTGATATTT
1 AATTTGAATTTGATATTT
* *
40681615 GAATTTGATTTTGATGTTT
1 -AATTTGAATTTGATATTT
40681634 AATTTG
1 AATTTG
40681640 GTATTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (18 bp):
AATTTGAATTTGATATTT
Found at i:40682485 original size:19 final size:20
Alignment explanation
Indices: 40682463--40682502 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
40682453 TTGTATATAT
40682463 TTTTTCATTTT-CAT-TTTTA
1 TTTTT-ATTTTACATATTTTA
40682482 TTTTTATTTTACATATTTTA
1 TTTTTATTTTACATATTTTA
40682502 T
1 T
40682503 CTAAATATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 8 0.42
20 6 0.32
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTTATTTTACATATTTTA
Found at i:40701466 original size:52 final size:52
Alignment explanation
Indices: 40701409--40701555 Score: 192
Period size: 52 Copynumber: 3.1 Consensus size: 52
40701399 TCAGATCTTA
40701409 TGTGACATGATATAAAATAAAAAATTAAAAATTAATATTTGAATAATGATAC
1 TGTGACATGATATAAAATAAAAAATTAAAAATTAATATTTGAATAATGATAC
40701461 TGTGACATG--AT---AT--AAAA-T----ATTAATATTTGAATAATGATAC
1 TGTGACATGATATAAAATAAAAAATTAAAAATTAATATTTGAATAATGATAC
* *
40701501 TGTGACATGATATAAAATAAAAAGTTAAAAACTAATATTTGAATAATGATAC
1 TGTGACATGATATAAAATAAAAAATTAAAAATTAATATTTGAATAATGATAC
40701553 TGT
1 TGT
40701556 AAAAATTTGT
Statistics
Matches: 81, Mismatches: 2, Indels: 24
0.76 0.02 0.22
Matches are distributed among these distances:
40 31 0.38
42 2 0.02
44 1 0.01
45 6 0.07
47 5 0.06
48 1 0.01
50 2 0.02
52 33 0.41
ACGTcount: A:0.50, C:0.05, G:0.12, T:0.34
Consensus pattern (52 bp):
TGTGACATGATATAAAATAAAAAATTAAAAATTAATATTTGAATAATGATAC
Found at i:40701489 original size:40 final size:40
Alignment explanation
Indices: 40701434--40701519 Score: 165
Period size: 40 Copynumber: 2.2 Consensus size: 40
40701424 AATAAAAAAT
40701434 TAAAA-ATTAATATTTGAATAATGATACTGTGACATGATA
1 TAAAATATTAATATTTGAATAATGATACTGTGACATGATA
40701473 TAAAATATTAATATTTGAATAATGATACTGTGACATGATA
1 TAAAATATTAATATTTGAATAATGATACTGTGACATGATA
40701513 TAAAATA
1 TAAAATA
40701520 AAAAGTTAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 5 0.11
40 41 0.89
ACGTcount: A:0.48, C:0.05, G:0.12, T:0.36
Consensus pattern (40 bp):
TAAAATATTAATATTTGAATAATGATACTGTGACATGATA
Found at i:40705849 original size:121 final size:121
Alignment explanation
Indices: 40705658--40705904 Score: 422
Period size: 121 Copynumber: 2.0 Consensus size: 121
40705648 AATAGTTTAG
* **
40705658 TCATACAAACATACATATATACACATGTATACATATTATCAGTTGAAAACACAGACCTCTCTAGC
1 TCATACAAACATACACATATACACATACATACATATTATCAGTTGAAAACACAGACCTCTCTAGC
40705723 AAGGGAAGTGGCAACCATATTGGAAGTAGCAACAGAAAGGAACATAAAAACATAGC
66 AAGGGAAGTGGCAACCATATTGGAAGTAGCAACAGAAAGGAACATAAAAACATAGC
* * * *
40705779 TCATACACACATATACATATACATATACATACATATTATCAGTTGAAAACACTGACCTCTCTAGC
1 TCATACAAACATACACATATACACATACATACATATTATCAGTTGAAAACACAGACCTCTCTAGC
*
40705844 AAGGGAAGTGGCAACCATATTGGAAGTAGCAACAGAAAGGAACATAAAAACGTAGC
66 AAGGGAAGTGGCAACCATATTGGAAGTAGCAACAGAAAGGAACATAAAAACATAGC
40705900 TCATA
1 TCATA
40705905 TAATCACAAA
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 118 1.00
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.21
Consensus pattern (121 bp):
TCATACAAACATACACATATACACATACATACATATTATCAGTTGAAAACACAGACCTCTCTAGC
AAGGGAAGTGGCAACCATATTGGAAGTAGCAACAGAAAGGAACATAAAAACATAGC
Found at i:40722106 original size:6 final size:6
Alignment explanation
Indices: 40722095--40722131 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
40722085 TTTAACCCTT
* *
40722095 TTATAA TTATAA TTATAA TTATAA TTTTAA TTTTAA T
1 TTATAA TTATAA TTATAA TTATAA TTATAA TTATAA T
40722132 CACTTTAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (6 bp):
TTATAA
Found at i:40744893 original size:21 final size:19
Alignment explanation
Indices: 40744861--40744903 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
40744851 TTAAGTTTTT
*
40744861 AACTGTTAAAATTAATGATC
1 AACTATTAAAATTAATGA-C
40744881 AACTATTACAAATTAATGAC
1 AACTATTA-AAATTAATGAC
40744901 AAC
1 AAC
40744904 CTTTTTTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.30
Consensus pattern (19 bp):
AACTATTAAAATTAATGAC
Found at i:40744957 original size:26 final size:26
Alignment explanation
Indices: 40744928--40744983 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
40744918 TTTTTGCCAC
*
40744928 GTGACATGTTTGGATTGTGTCAAGTG
1 GTGACATGTTTGGATTGTATCAAGTG
40744954 GTGACATGTTTGGATTGTATCAAGTG
1 GTGACATGTTTGGATTGTATCAAGTG
40744980 GTGA
1 GTGA
40744984 AAACTAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.21, C:0.07, G:0.34, T:0.38
Consensus pattern (26 bp):
GTGACATGTTTGGATTGTATCAAGTG
Found at i:40745516 original size:13 final size:13
Alignment explanation
Indices: 40745498--40745527 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
40745488 TTCTTTTGAG
*
40745498 AAAAAAACAAAGA
1 AAAAAAAAAAAGA
40745511 AAAAAAAAAAAGA
1 AAAAAAAAAAAGA
40745524 AAAA
1 AAAA
40745528 TTGTAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.90, C:0.03, G:0.07, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAGA
Found at i:40748661 original size:22 final size:23
Alignment explanation
Indices: 40748616--40748660 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
40748606 GCGATTATTG
*
40748616 TTTTAAAAAATTATAATATATAT
1 TTTTAAAAAATCATAATATATAT
*
40748639 TTTTAAATAAATCAAAATATAT
1 TTTTAAA-AAATCATAATATAT
40748661 TAAATAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
TTTTAAAAAATCATAATATATAT
Found at i:40751992 original size:20 final size:19
Alignment explanation
Indices: 40751948--40751992 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
40751938 CTGGAATTTT
40751948 TTTTTGAAATTTTCATGAA
1 TTTTTGAAATTTTCATGAA
*
40751967 TCTTTTGAAATATTTCATGCA
1 T-TTTTGAAAT-TTTCATGAA
40751988 TTTTT
1 TTTTT
40751993 TTTTGAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 1 0.04
20 13 0.57
21 9 0.39
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.56
Consensus pattern (19 bp):
TTTTTGAAATTTTCATGAA
Found at i:40751993 original size:21 final size:20
Alignment explanation
Indices: 40751947--40751993 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
40751937 TCTGGAATTT
40751947 TTTTTTGAAATTTTCATGAA
1 TTTTTTGAAATTTTCATGAA
* *
40751967 TCTTTTGAAATATTTCATGCA
1 TTTTTTGAAAT-TTTCATGAA
40751988 TTTTTT
1 TTTTTT
40751994 TTTGAAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.57
Consensus pattern (20 bp):
TTTTTTGAAATTTTCATGAA
Found at i:40752060 original size:17 final size:17
Alignment explanation
Indices: 40752025--40752060 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
40752015 TTACCGGTGA
*
40752025 TTTTCATTTTTAATTTT
1 TTTTCATTTTTAATCTT
*
40752042 TTTTCATTTTTGATCTT
1 TTTTCATTTTTAATCTT
40752059 TT
1 TT
40752061 GCATGCATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.08, G:0.03, T:0.75
Consensus pattern (17 bp):
TTTTCATTTTTAATCTT
Found at i:40755550 original size:37 final size:37
Alignment explanation
Indices: 40755508--40755632 Score: 153
Period size: 37 Copynumber: 3.4 Consensus size: 37
40755498 CAAACAAAAC
40755508 ATTGAGTTCGTTTTAAGCAAACAAAAGA-GCAATGTGA
1 ATTGAGTT-GTTTTAAGCAAACAAAAGAGGCAATGTGA
* * *
40755545 ATTGAGTTCTTTTTAAGCAAACAAAAGAGGCAATTTTA
1 ATTGAGTT-GTTTTAAGCAAACAAAAGAGGCAATGTGA
* * * *
40755583 ATTGGGTTTTTTTAAGTAAACAAAAGAGGTAATGTGA
1 ATTGAGTTGTTTTAAGCAAACAAAAGAGGCAATGTGA
*
40755620 ATTGGGTTGTTTT
1 ATTGAGTTGTTTT
40755633 TTTCTCGAGA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
37 64 0.82
38 14 0.18
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.35
Consensus pattern (37 bp):
ATTGAGTTGTTTTAAGCAAACAAAAGAGGCAATGTGA
Found at i:40762811 original size:409 final size:409
Alignment explanation
Indices: 40762052--40763278 Score: 2436
Period size: 409 Copynumber: 3.0 Consensus size: 409
40762042 AAAACGAGGA
40762052 AAAAACTCGATCAATTTGTGTCGGAAAAAGAAAGCCAAAGAAGGAAGGATTGTAAAATTAAAGAG
1 AAAAACTCGATCAATTTGTGTCGGAAAAAGAAAGCCAAAGAAGGAAGGATTGTAAAATTAAAGAG
40762117 AAAAAGGAAATAAAAACCCGCGAGGCAAACGAGGGAGAATTTTATAGAGTCGCCAGAGTTGAAGG
66 AAAAAGGAAATAAAAACCCGCGAGGCAAACGAGGGAGAATTTTATAGAGTCGCCAGAGTTGAAGG
40762182 CGCCATAACAATTTGTTTTCGGTAAGAATGTTTGAACCGGATCAAACCAGTGAGTTGAATCGATT
131 CGCCATAACAATTTGTTTTCGGTAAGAATGTTTGAACCGGATCAAACCAGTGAGTTGAATCGATT
40762247 GAATCAAAAATTGATTTGAATAATGAATTGGTATAAATCAATTCAAACGGTTAATTATTTTTTAA
196 GAATCAAAAATTGATTTGAATAATGAATTGGTATAAATCAATTCAAACGGTTAATTATTTTTTAA
40762312 TTTTTTTTATAAAATTATTATTAATTTTATCAAATTGATTGGATTAATAAATCGATAGTCTAATC
261 TTTTTTTTATAAAATTATTATTAATTTTATCAAATTGATTGGATTAATAAATCGATAGTCTAATC
40762377 ACTTCGATTATCGACCCGATTCTAAAAACATTAATTTGTTGAGATTCCAACACAAATTTAAAAAT
326 ACTTCGATTATCGACCCGATTCTAAAAACATTAATTTGTTGAGATTCCAACACAAATTTAAAAAT
40762442 CGGATTAGATAAACTCGAT
391 CGGATTAGATAAACTCGAT
40762461 AAAAACTCGATCAATTTGTGTCGGAAAAAGAAAGCCAAAGAAGGAAGGATTGTAAAATTAAAGAG
1 AAAAACTCGATCAATTTGTGTCGGAAAAAGAAAGCCAAAGAAGGAAGGATTGTAAAATTAAAGAG
40762526 AAAAAGGAAATAAAAACCCGCGAGGCAAACGAGGGAGAATTTTATAGAGTCGCCAGAGTTGAAGG
66 AAAAAGGAAATAAAAACCCGCGAGGCAAACGAGGGAGAATTTTATAGAGTCGCCAGAGTTGAAGG
40762591 CGCCATAACAATTTGTTTTCGGTAAGAATGTTTGAACCGGATCAAACCAGTGAGTTGAATCGATT
131 CGCCATAACAATTTGTTTTCGGTAAGAATGTTTGAACCGGATCAAACCAGTGAGTTGAATCGATT
40762656 GAATCAAAAATTGATTTGAATAATGAATTGGTATAAATCAATTCAAACGGTTAATTATTTTTTAA
196 GAATCAAAAATTGATTTGAATAATGAATTGGTATAAATCAATTCAAACGGTTAATTATTTTTTAA
40762721 TTTTTTTTATAAAATTATTATTAATTTTATCAAATTGATTGGATTAATAAATCGATAGTCTAATC
261 TTTTTTTTATAAAATTATTATTAATTTTATCAAATTGATTGGATTAATAAATCGATAGTCTAATC
40762786 ACTTCGATTATCGACCCGATTCTAAAAACATTAATTTGTTGAGATTCCAACACAAATTTAAAAAT
326 ACTTCGATTATCGACCCGATTCTAAAAACATTAATTTGTTGAGATTCCAACACAAATTTAAAAAT
40762851 CGGATTAGATAAACTCGAT
391 CGGATTAGATAAACTCGAT
40762870 AAAAACTCGATCAATTTGTGTCGGAAAAAGAAAGCCAAAGAAGGAAGGATTGTAAAATTAAAGAG
1 AAAAACTCGATCAATTTGTGTCGGAAAAAGAAAGCCAAAGAAGGAAGGATTGTAAAATTAAAGAG
40762935 AAAAAGGAAATAAAAACCCGCGAGGCAAACGAGGGAGAATTTTATAGAGTCGCCAGAGTTGAAGG
66 AAAAAGGAAATAAAAACCCGCGAGGCAAACGAGGGAGAATTTTATAGAGTCGCCAGAGTTGAAGG
40763000 CGCCATAACAATTTGTTTTCGGTAAGAATGTTTGAACCGGATCAAACCAGTGAGTTGAATCGATT
131 CGCCATAACAATTTGTTTTCGGTAAGAATGTTTGAACCGGATCAAACCAGTGAGTTGAATCGATT
40763065 GAATCAAAAATTGATTTGAATAATGAATTGGTATAAATCAATTCAAACGGTTAATTATTTTTTAA
196 GAATCAAAAATTGATTTGAATAATGAATTGGTATAAATCAATTCAAACGGTTAATTATTTTTTAA
40763130 TTTTTTTTATAAAATTATTATTAATTTTATCAAATTGATTGGATTAATAAATCGATAGTCTAATC
261 TTTTTTTTATAAAATTATTATTAATTTTATCAAATTGATTGGATTAATAAATCGATAGTCTAATC
* *
40763195 ACTTCGATTATCGACCCGATTCTAAAAATATTAGTTTGTTGAGATTCCAACACAAATTTAAAAAT
326 ACTTCGATTATCGACCCGATTCTAAAAACATTAATTTGTTGAGATTCCAACACAAATTTAAAAAT
40763260 CGGATTAGATAAACTCGAT
391 CGGATTAGATAAACTCGAT
40763279 TTTATATCAC
Statistics
Matches: 816, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
409 816 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.30
Consensus pattern (409 bp):
AAAAACTCGATCAATTTGTGTCGGAAAAAGAAAGCCAAAGAAGGAAGGATTGTAAAATTAAAGAG
AAAAAGGAAATAAAAACCCGCGAGGCAAACGAGGGAGAATTTTATAGAGTCGCCAGAGTTGAAGG
CGCCATAACAATTTGTTTTCGGTAAGAATGTTTGAACCGGATCAAACCAGTGAGTTGAATCGATT
GAATCAAAAATTGATTTGAATAATGAATTGGTATAAATCAATTCAAACGGTTAATTATTTTTTAA
TTTTTTTTATAAAATTATTATTAATTTTATCAAATTGATTGGATTAATAAATCGATAGTCTAATC
ACTTCGATTATCGACCCGATTCTAAAAACATTAATTTGTTGAGATTCCAACACAAATTTAAAAAT
CGGATTAGATAAACTCGAT
Found at i:40779741 original size:21 final size:21
Alignment explanation
Indices: 40779717--40779761 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
40779707 CTCCTCTGTA
*
40779717 TCCTCCGTCTCCTCAGCGGCC
1 TCCTCCGTCTCCTCAGCAGCC
* *
40779738 TCCTCTGTCTCCTCTGCAGCC
1 TCCTCCGTCTCCTCAGCAGCC
40779759 TCC
1 TCC
40779762 ATTTCCAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.04, C:0.51, G:0.16, T:0.29
Consensus pattern (21 bp):
TCCTCCGTCTCCTCAGCAGCC
Found at i:40791122 original size:12 final size:12
Alignment explanation
Indices: 40791105--40791129 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
40791095 CAGAGGCTAT
40791105 TAACAATATTTA
1 TAACAATATTTA
40791117 TAACAATATTTA
1 TAACAATATTTA
40791129 T
1 T
40791130 GTTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TAACAATATTTA
Found at i:40793763 original size:21 final size:20
Alignment explanation
Indices: 40793734--40793772 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
40793724 ACGCCTACGA
40793734 AAAGATCGCTTGGATTTAAG
1 AAAGATCGCTTGGATTTAAG
40793754 AAAGAGTCGCTTGGATTTA
1 AAAGA-TCGCTTGGATTTA
40793773 TCCATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
AAAGATCGCTTGGATTTAAG
Found at i:40793903 original size:8 final size:8
Alignment explanation
Indices: 40793890--40793918 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
40793880 TTTGGTTTGT
40793890 TTATTTTA
1 TTATTTTA
40793898 TTATTTTA
1 TTATTTTA
40793906 TTATTTTA
1 TTATTTTA
40793914 TTATT
1 TTATT
40793919 ATTTATCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTATTTTA
Found at i:40793963 original size:30 final size:30
Alignment explanation
Indices: 40793929--40794025 Score: 92
Period size: 32 Copynumber: 3.1 Consensus size: 30
40793919 ATTTATCATT
40793929 TAAATATATATTTAATATATATAAAT-TATA
1 TAAATA-ATATTTAATATATATAAATATATA
40793959 TAAATTAAAATATATTAATA-ATATAGAATAATATA
1 TAAA-T--AATAT-TTAATATATATA-AAT-ATATA
*
40793994 TAAATAATA-TTAATAATATATAAATAAATA
1 TAAATAATATTTAAT-ATATATAAATATATA
40794024 TA
1 TA
40794026 TAAAGAAAAT
Statistics
Matches: 57, Mismatches: 1, Indels: 18
0.75 0.01 0.24
Matches are distributed among these distances:
30 15 0.26
31 5 0.09
32 18 0.32
33 10 0.18
34 1 0.02
35 8 0.14
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (30 bp):
TAAATAATATTTAATATATATAAATATATA
Found at i:40793971 original size:21 final size:20
Alignment explanation
Indices: 40793945--40794025 Score: 90
Period size: 21 Copynumber: 3.8 Consensus size: 20
40793935 TATATTTAAT
*
40793945 ATATATAAATTATATAAATTAAA
1 ATATATAAATAATATAAA-T--A
*
40793968 ATATATTAATAATATAGAATA
1 ATATATAAATAATATA-AATA
*
40793989 ATATATAAATAATATTAATA
1 ATATATAAATAATATAAATA
40794009 ATATATAAATAAATATA
1 ATATATAAAT-AATATA
40794026 TAAAGAAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
20 14 0.27
21 20 0.39
23 15 0.29
24 2 0.04
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (20 bp):
ATATATAAATAATATAAATA
Found at i:40793971 original size:23 final size:22
Alignment explanation
Indices: 40793945--40794037 Score: 84
Period size: 23 Copynumber: 4.2 Consensus size: 22
40793935 TATATTTAAT
*
40793945 ATATATAAATTATATAAATTAAA
1 ATATATAAATAATATAAA-TAAA
*
40793968 ATATATTAATAATATAGAAT--A
1 ATATATAAATAATATA-AATAAA
*
40793989 ATATATAAATAATATTAATAATA
1 ATATATAAATAATATAAATAA-A
* *
40794012 TATAAATAAAT-ATATAAAGAAA
1 -ATATATAAATAATATAAATAAA
40794034 ATAT
1 ATAT
40794038 GCGTTATATA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
20 3 0.05
21 18 0.32
22 1 0.02
23 24 0.42
24 11 0.19
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
ATATATAAATAATATAAATAAA
Found at i:40793982 original size:9 final size:9
Alignment explanation
Indices: 40793949--40794012 Score: 51
Period size: 9 Copynumber: 6.8 Consensus size: 9
40793939 TTTAATATAT
40793949 ATAA-ATTA
1 ATAATATTA
40793957 TATAA-ATTA
1 -ATAATATTA
*
40793966 AAATATATTA
1 ATA-ATATTA
*
40793976 ATAATATAGA
1 ATAATAT-TA
40793986 ATAATATATAA
1 ATAATAT-T-A
40793997 ATAATATTA
1 ATAATATTA
40794006 ATAATAT
1 ATAATAT
40794013 ATAAATAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
8 2 0.04
9 21 0.45
10 16 0.34
11 8 0.17
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (9 bp):
ATAATATTA
Found at i:40794492 original size:13 final size:13
Alignment explanation
Indices: 40794476--40794500 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40794466 GATTTCGTTG
40794476 AAATCAATATAGT
1 AAATCAATATAGT
40794489 AAATCAATATAG
1 AAATCAATATAG
40794501 ATTTATAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (13 bp):
AAATCAATATAGT
Found at i:40796183 original size:28 final size:28
Alignment explanation
Indices: 40796143--40796201 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
40796133 TATTTATATC
*
40796143 AAAATATACTATCCATAAAAAATTAATAA
1 AAAATATACTATCCATAAAAAA-AAATAA
* **
40796172 AAAATAT-TTATCTTTAAAAAAAAATAA
1 AAAATATACTATCCATAAAAAAAAATAA
40796199 AAA
1 AAA
40796202 TCCCATGAGC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 8 0.31
28 11 0.42
29 7 0.27
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (28 bp):
AAAATATACTATCCATAAAAAAAAATAA
Found at i:40796674 original size:7 final size:6
Alignment explanation
Indices: 40796628--40796663 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
40796618 TTATCCAAAC
40796628 TTAAAT TTAAA- -TAAAT TTAAAT TTAAAT TTAAAT TT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TT
40796664 TACAATTTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.14
6 24 0.86
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TTAAAT
Found at i:40798900 original size:1 final size:1
Alignment explanation
Indices: 40798894--40798918 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
40798884 ATTATGTAAA
40798894 CCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCC
40798919 ACACACACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:40802885 original size:256 final size:257
Alignment explanation
Indices: 40802422--40802937 Score: 892
Period size: 256 Copynumber: 2.0 Consensus size: 257
40802412 TTGTCACTTT
*
40802422 TCAATTTTAAATTGAAACAAAGATTATGGGGCATAGTTTTATGACAGTTTGCTTAATTAGATTCA
1 TCAATTTTAAATTGAAACAAAGACTATGGGGCATAGTTTTATGACAGTTTGCTTAATTAGATTCA
* *
40802487 GTGTTGAATTTTTCTCAATGACACTAATATTTGAATAACTATTTACTATATTCTTTAGGGATAAT
66 GTGTTGAATCTTTCTCAATGACACTAATATTTGAATAACTATTTAATATATTCTTTAGGGATAAT
*
40802552 TATTCATATCCAGTTGGATTTGAAGTAATCATTACCACAATAATGTCTTCAAGTAGCGAATATTG
131 TATTCATATCCAGTTGGATTTGAAGTAATCATTACCACAATAATGTCTTAAAGTAGCGAATATTG
*
40802617 ATGATGTAGAAAAAGGCAATGCCTTGTTAAACTATTGTCACCTACTATATTTGCTCAACCCA
196 ATGATGTAGAAAAAGGCAATGCCTTGTTAAACTATTGTCACCCACTATATTTGCTCAACCCA
* *
40802679 TCAA-TTTAAATTGAAACAAAGACTATGGGGCGTAGTTTTATGATAGTTTGCTTAATTAGATTCA
1 TCAATTTTAAATTGAAACAAAGACTATGGGGCATAGTTTTATGACAGTTTGCTTAATTAGATTCA
*
40802743 GTGTTGAATCTTTCTCATTGACACTAATATTTGAATAACTATTTAATATATTCTTTAGGGATAAT
66 GTGTTGAATCTTTCTCAATGACACTAATATTTGAATAACTATTTAATATATTCTTTAGGGATAAT
* *
40802808 TATTCATATCCAGTTGGATTTGTAGTAATCATTACCACAATAATGTGTTAAAGTA-CAGAATATT
131 TATTCATATCCAGTTGGATTTGAAGTAATCATTACCACAATAATGTCTTAAAGTAGC-GAATATT
* * *
40802872 GATGATTTAGAAAAAGGCAATGTCTTGTTAAACTATTGTCACCCACTATATTTGCTCAACTCA
195 GATGATGTAGAAAAAGGCAATGCCTTGTTAAACTATTGTCACCCACTATATTTGCTCAACCCA
40802935 TCA
1 TCA
40802938 GTGTTTTGCT
Statistics
Matches: 245, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
255 1 0.00
256 240 0.98
257 4 0.02
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (257 bp):
TCAATTTTAAATTGAAACAAAGACTATGGGGCATAGTTTTATGACAGTTTGCTTAATTAGATTCA
GTGTTGAATCTTTCTCAATGACACTAATATTTGAATAACTATTTAATATATTCTTTAGGGATAAT
TATTCATATCCAGTTGGATTTGAAGTAATCATTACCACAATAATGTCTTAAAGTAGCGAATATTG
ATGATGTAGAAAAAGGCAATGCCTTGTTAAACTATTGTCACCCACTATATTTGCTCAACCCA
Found at i:40803379 original size:9 final size:9
Alignment explanation
Indices: 40803365--40803390 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
40803355 TCTTGTCTAG
40803365 TATGCAACA
1 TATGCAACA
40803374 TATGCAACA
1 TATGCAACA
40803383 TATGCAAC
1 TATGCAAC
40803391 TGCGTCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.12, T:0.23
Consensus pattern (9 bp):
TATGCAACA
Found at i:40809288 original size:31 final size:31
Alignment explanation
Indices: 40809251--40809309 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
40809241 CATCAGCTAT
40809251 TATTTACTAAATTTCTTATTGGCTTTATAAC
1 TATTTACTAAATTTCTTATTGGCTTTATAAC
40809282 TATTTACTAAATTTCTTATTGGCTTTAT
1 TATTTACTAAATTTCTTATTGGCTTTAT
40809310 TATTGCTCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.12, G:0.07, T:0.54
Consensus pattern (31 bp):
TATTTACTAAATTTCTTATTGGCTTTATAAC
Found at i:40829219 original size:31 final size:31
Alignment explanation
Indices: 40829184--40829243 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
40829174 AGGTCGAGTA
40829184 GGATTCGGCCTCGAATGTTCAAGCTCGAGCC
1 GGATTCGGCCTCGAATGTTCAAGCTCGAGCC
*
40829215 GGATTCGGGCTCGAATGTTCAAGCTCGAG
1 GGATTCGGCCTCGAATGTTCAAGCTCGAG
40829244 TCTGACCCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (31 bp):
GGATTCGGCCTCGAATGTTCAAGCTCGAGCC
Found at i:40838154 original size:4 final size:5
Alignment explanation
Indices: 40838127--40838155 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
40838117 AGGAATTCAC
40838127 AATTT AATTT AATTT AATTT AA-TT AATTT
1 AATTT AATTT AATTT AATTT AATTT AATTT
40838156 TAATCGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
AATTT
Found at i:40838159 original size:15 final size:15
Alignment explanation
Indices: 40838127--40838155 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
40838117 AGGAATTCAC
40838127 AATTTAATTTAATTT
1 AATTTAATTTAATTT
40838142 AATTTAA-TTAATTT
1 AATTTAATTTAATTT
40838156 TAATCGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTTAATTTAATTT
Found at i:40838171 original size:15 final size:15
Alignment explanation
Indices: 40838135--40838183 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
40838125 ACAATTTAAT
**
40838135 TTAA-TTTAATTTAA
1 TTAATTTTAATTCGA
40838149 TTAATTTTAA-TCGA
1 TTAATTTTAATTCGA
40838163 TTAAGTTTTAATTCGA
1 TTAA-TTTTAATTCGA
40838179 TTAAT
1 TTAAT
40838184 ATATGTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 10 0.33
15 12 0.40
16 8 0.27
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (15 bp):
TTAATTTTAATTCGA
Found at i:40838180 original size:16 final size:14
Alignment explanation
Indices: 40838148--40838183 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 14
40838138 ATTTAATTTA
40838148 ATTAATTTTAATCG
1 ATTAATTTTAATCG
40838162 ATTAAGTTTTAATTCG
1 ATTAA-TTTTAA-TCG
40838178 ATTAAT
1 ATTAAT
40838184 ATATGTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 7 0.35
16 8 0.40
ACGTcount: A:0.36, C:0.06, G:0.08, T:0.50
Consensus pattern (14 bp):
ATTAATTTTAATCG
Found at i:40849588 original size:3 final size:3
Alignment explanation
Indices: 40849580--40849649 Score: 140
Period size: 3 Copynumber: 23.3 Consensus size: 3
40849570 TAAAATTAAC
40849580 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
40849628 ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
40849650 CATTAACAAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:40851824 original size:11 final size:11
Alignment explanation
Indices: 40851810--40851898 Score: 54
Period size: 11 Copynumber: 7.7 Consensus size: 11
40851800 TGCTTTGTTG
40851810 TTATTTTACTA
1 TTATTTTACTA
40851821 TTATATTGCTACTA
1 TTAT-TT--TACTA
*
40851835 TT-TTGTTATTA
1 TTATT-TTACTA
* *
40851846 TTATTTAAATA
1 TTATTTTACTA
* * *
40851857 TTATGTAACTC
1 TTATTTTACTA
* *
40851868 TTATTTTATTG
1 TTATTTTACTA
40851879 TTAATTTTACTA
1 TT-ATTTTACTA
40851891 TTATTTTA
1 TTATTTTA
40851899 GAGACATTTA
Statistics
Matches: 60, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
11 37 0.62
12 14 0.23
13 2 0.03
14 7 0.12
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (11 bp):
TTATTTTACTA
Found at i:40852053 original size:13 final size:13
Alignment explanation
Indices: 40852037--40852072 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
40852027 AAATTATTTT
40852037 TATATAAAAATAA
1 TATATAAAAATAA
40852050 TATATAAAAATAA
1 TATATAAAAATAA
40852063 TATA-AAAAAT
1 TATATAAAAAT
40852073 TTAATATGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
TATATAAAAATAA
Found at i:40859937 original size:3 final size:3
Alignment explanation
Indices: 40859929--40859964 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
40859919 TTTTCATCTT
*
40859929 TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
40859965 AATTTTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:40860472 original size:28 final size:29
Alignment explanation
Indices: 40860428--40860495 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 29
40860418 AATTAAATAG
*
40860428 TTGAGTGACCATTTTGTAAC-TTTCATAA
1 TTGAGTGACCACTTTGTAACTTTTCATAA
* *
40860456 TTGGGTGACCACTTTGTAACTTTTTATAA
1 TTGAGTGACCACTTTGTAACTTTTCATAA
40860485 TTGAGTGACCA
1 TTGAGTGACCA
40860496 AAATAAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
28 18 0.51
29 17 0.49
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (29 bp):
TTGAGTGACCACTTTGTAACTTTTCATAA
Found at i:40861581 original size:27 final size:27
Alignment explanation
Indices: 40861549--40861600 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
40861539 TGTTGGTACT
* * *
40861549 TATAAATCCTTAACTTGTTGATTTTCA
1 TATAAATCATTAAATTGATGATTTTCA
*
40861576 TATAAATTATTAAATTGATGATTTT
1 TATAAATCATTAAATTGATGATTTT
40861601 TTTTAAACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.50
Consensus pattern (27 bp):
TATAAATCATTAAATTGATGATTTTCA
Found at i:40863418 original size:28 final size:26
Alignment explanation
Indices: 40863386--40863438 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 26
40863376 AATTTTATAG
*
40863386 TAATTCAATTTTATTTATTTTTAATTAT
1 TAATTCAATTTT-TATA-TTTTAATTAT
40863414 TAATTCAATTTTTATATTTTAATTA
1 TAATTCAATTTTTATATTTTAATTA
40863439 AAGTTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 9 0.38
27 3 0.12
28 12 0.50
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (26 bp):
TAATTCAATTTTTATATTTTAATTAT
Found at i:40873891 original size:65 final size:64
Alignment explanation
Indices: 40873755--40873876 Score: 165
Period size: 65 Copynumber: 1.9 Consensus size: 64
40873745 TCAAAATATG
** * ****
40873755 ATTTTTGTATGTCGAAATAATGTACATATGACACGTCAAATTGATTTTTATTCGGTTAAAAATTA
1 ATTTTTGTATGTCGAAATAATGTACATATGACACGTCAAATT-ATTAATAATAAAATAAAAATTA
40873820 ATTTTTGTATGTCGAAATAATGTACATATGACACGTCAAATT-TTAATAATAAAATAA
1 ATTTTTGTATGTCGAAATAATGTACATATGACACGTCAAATTATTAATAATAAAATAA
40873877 TCAATTTATT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
63 8 0.16
65 42 0.84
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (64 bp):
ATTTTTGTATGTCGAAATAATGTACATATGACACGTCAAATTATTAATAATAAAATAAAAATTA
Found at i:40877002 original size:6 final size:6
Alignment explanation
Indices: 40876991--40877017 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
40876981 ATGTCCTTCA
40876991 CATTTT CATTTT CATTTT CATTTT CAT
1 CATTTT CATTTT CATTTT CATTTT CAT
40877018 CTGTCTTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.63
Consensus pattern (6 bp):
CATTTT
Found at i:40894506 original size:16 final size:16
Alignment explanation
Indices: 40894469--40894518 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
40894459 GAATCAATTA
40894469 AAAATAATAATAT-TTG
1 AAAATAA-AATATCTTG
*
40894485 ATAAATAAAATATCTTT
1 A-AAATAAAATATCTTG
40894502 AAAATTAAAA-ATCTTG
1 AAAA-TAAAATATCTTG
40894518 A
1 A
40894519 GACATGAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (16 bp):
AAAATAAAATATCTTG
Found at i:40902674 original size:6 final size:6
Alignment explanation
Indices: 40902663--40902689 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
40902653 GTTGAAAAAG
40902663 CATATA CATATA CATATA CATATA CAT
1 CATATA CATATA CATATA CATATA CAT
40902690 TGCTTGAGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Found at i:40903590 original size:25 final size:28
Alignment explanation
Indices: 40903562--40903612 Score: 72
Period size: 25 Copynumber: 1.9 Consensus size: 28
40903552 ACGAGCTTAA
*
40903562 TTGAGCTTCA-AAT-TTCGAG-TTGAGT
1 TTGAGCTTAACAATATTCGAGCTTGAGT
40903587 TTGAGCTTAACAATATTCGAGCTTGA
1 TTGAGCTTAACAATATTCGAGCTTGA
40903613 TTCGATTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 9 0.41
26 3 0.14
27 6 0.27
28 4 0.18
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (28 bp):
TTGAGCTTAACAATATTCGAGCTTGAGT
Found at i:40915042 original size:19 final size:20
Alignment explanation
Indices: 40915015--40915062 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
40915005 ATTTTACATG
40915015 AAAAATAAAAT-TGCTTT-T
1 AAAAATAAAATATGCTTTGT
*
40915033 AAATAATAAATTATGCTTTGT
1 AAA-AATAAAATATGCTTTGT
40915054 AAAAATAAA
1 AAAAATAAA
40915063 GGGTTTTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 3 0.12
19 7 0.27
20 12 0.46
21 4 0.15
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.35
Consensus pattern (20 bp):
AAAAATAAAATATGCTTTGT
Found at i:40916916 original size:15 final size:16
Alignment explanation
Indices: 40916896--40916925 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
40916886 TTTAATCATG
40916896 AATTAAAA-TTAAAAA
1 AATTAAAAGTTAAAAA
40916911 AATTAAAAGTTAAAA
1 AATTAAAAGTTAAAA
40916926 TTGGATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
AATTAAAAGTTAAAAA
Found at i:40917721 original size:26 final size:23
Alignment explanation
Indices: 40917682--40917763 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 23
40917672 AAAAACTAAA
*
40917682 AAAAAAATGAAACCCTTAAAAGTTGGT
1 AAAAAAAT-TAACCCTTAAAAG-T--T
40917709 AAAAAAATTAA-CCTATAAAAGTT
1 AAAAAAATTAACCCT-TAAAAGTT
*
40917732 AAAAAAATTAAACTCCTTAAAAATT
1 AAAAAAATT-AAC-CCTTAAAAGTT
40917757 AAAAAAA
1 AAAAAAA
40917764 AATTTAGACC
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
23 10 0.20
24 2 0.04
25 18 0.37
26 11 0.22
27 8 0.16
ACGTcount: A:0.61, C:0.10, G:0.06, T:0.23
Consensus pattern (23 bp):
AAAAAAATTAACCCTTAAAAGTT
Found at i:40917764 original size:26 final size:25
Alignment explanation
Indices: 40917681--40917764 Score: 84
Period size: 26 Copynumber: 3.3 Consensus size: 25
40917671 TAAAAACTAA
*
40917681 AAAAAAAATGAAACCCTTAAAAGTT
1 AAAAAAAATTAAACCCTTAAAAGTT
*
40917706 GGTAAAAAAATT-AA-CCTATAAAAGTT
1 --AAAAAAAATTAAACCCT-TAAAAGTT
*
40917732 -AAAAAAATTAAACTCCTTAAAAATT
1 AAAAAAAATTAAAC-CCTTAAAAGTT
40917757 AAAAAAAA
1 AAAAAAAA
40917765 ATTTAGACCC
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
23 9 0.18
24 2 0.04
25 10 0.20
26 20 0.41
27 8 0.16
ACGTcount: A:0.62, C:0.10, G:0.06, T:0.23
Consensus pattern (25 bp):
AAAAAAAATTAAACCCTTAAAAGTT
Found at i:40917776 original size:27 final size:26
Alignment explanation
Indices: 40917666--40917776 Score: 86
Period size: 27 Copynumber: 4.2 Consensus size: 26
40917656 ATAAATTTGG
* *
40917666 ACCCTTAAAAACTAAAAAAAAAATGAA
1 ACCCTTAAAAA-TTAAAAAAAAATTAA
* **
40917693 ACCCTTAAAAGTTGGTAAAAAAATT-A
1 ACCCTTAAAAATT-AAAAAAAAATTAA
*
40917719 A-CCTATAAAAGTT--AAAAAAATTAA
1 ACCCT-TAAAAATTAAAAAAAAATTAA
*
40917743 ACTCCTTAAAAATTAAAAAAAAATTTAG
1 AC-CCTTAAAAATTAAAAAAAAA-TTAA
40917771 ACCCTT
1 ACCCTT
40917777 TTAACTTTGA
Statistics
Matches: 69, Mismatches: 7, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
23 9 0.13
24 2 0.03
25 10 0.14
26 14 0.20
27 29 0.42
28 5 0.07
ACGTcount: A:0.57, C:0.14, G:0.05, T:0.24
Consensus pattern (26 bp):
ACCCTTAAAAATTAAAAAAAAATTAA
Found at i:40923308 original size:2 final size:2
Alignment explanation
Indices: 40923296--40923336 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
40923286 ATATAGTTCC
* *
40923296 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
40923337 GCGTGTGTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:40933028 original size:7 final size:7
Alignment explanation
Indices: 40933018--40933043 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
40933008 TAGCTCGTAG
40933018 CTTGGAC
1 CTTGGAC
40933025 CTTGGAC
1 CTTGGAC
40933032 CTTGGAC
1 CTTGGAC
40933039 CTTGG
1 CTTGG
40933044 TGGTAAACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.27, G:0.31, T:0.31
Consensus pattern (7 bp):
CTTGGAC
Found at i:40933405 original size:19 final size:20
Alignment explanation
Indices: 40933376--40933413 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
40933366 CTTTTAATTT
40933376 TTTTATAATTTCTTAATATG
1 TTTTATAATTTCTTAATATG
*
40933396 TTTTAT-ATTTTTTAATAT
1 TTTTATAATTTCTTAATAT
40933414 TTTATGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (20 bp):
TTTTATAATTTCTTAATATG
Found at i:40933415 original size:10 final size:10
Alignment explanation
Indices: 40933367--40933428 Score: 58
Period size: 10 Copynumber: 6.2 Consensus size: 10
40933357 CCTGAAAATC
40933367 TTTTAAT-TT
1 TTTTAATATT
40933376 TTTT-ATAATT
1 TTTTAAT-ATT
* *
40933386 TCTTAATATG
1 TTTTAATATT
40933396 TTTT-ATATT
1 TTTTAATATT
40933405 TTTTAATATT
1 TTTTAATATT
40933415 TTATGTAATATT
1 TT-T-TAATATT
40933427 TT
1 TT
40933429 AATTTTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
8 2 0.05
9 12 0.28
10 17 0.40
11 3 0.07
12 9 0.21
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (10 bp):
TTTTAATATT
Found at i:40933437 original size:29 final size:28
Alignment explanation
Indices: 40933367--40933438 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
40933357 CCTGAAAATC
*
40933367 TTTTAATTTTTTT-ATAATTTCTTAATA
1 TTTTAATTTTTTTAATAATTTATTAATA
* *
40933394 TGTTTTATATTTTTTAATATTTTATGTAATA
1 T-TTTAAT-TTTTTTAATAATTTAT-TAATA
40933425 TTTTAATTTTTTTA
1 TTTTAATTTTTTTA
40933439 GATGATAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
27 1 0.03
28 5 0.14
29 13 0.35
30 12 0.32
31 6 0.16
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.68
Consensus pattern (28 bp):
TTTTAATTTTTTTAATAATTTATTAATA
Found at i:40944511 original size:82 final size:81
Alignment explanation
Indices: 40944361--40944516 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 81
40944351 CCTCACAAAT
* * * *
40944361 AAAGACATGTGGCAGTTCGAAAGGCCACCCGAGAGTTAAAATCCACCGGAAGGACACCATAAGTT
1 AAAGACATGTGGCAGGTCGAAAGGCCACCCGAAAGATAAAATCCACCGGAAGGACACCAAAAGTT
40944426 TCACCTCCCCATGAAC
66 TCACCTCCCCATGAAC
* * * *
40944442 AAAGACATGTGGCAGGTCGGAAGGCCAGCCTGAAAGATAAACTCCATCGGAAGGACACCAAAAGT
1 AAAGACATGTGGCAGGTCGAAAGGCCA-CCCGAAAGATAAAATCCACCGGAAGGACACCAAAAGT
40944507 TTCACCTCCC
65 TTCACCTCCC
40944517 GTCTTTGACA
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
81 25 0.38
82 41 0.62
ACGTcount: A:0.35, C:0.28, G:0.22, T:0.15
Consensus pattern (81 bp):
AAAGACATGTGGCAGGTCGAAAGGCCACCCGAAAGATAAAATCCACCGGAAGGACACCAAAAGTT
TCACCTCCCCATGAAC
Found at i:40949723 original size:16 final size:15
Alignment explanation
Indices: 40949704--40949770 Score: 55
Period size: 16 Copynumber: 4.2 Consensus size: 15
40949694 ACTCAAACCA
40949704 AACTTAAATTAAAAAT
1 AACTTAAATT-AAAAT
*
40949720 AACTATAACTTAAAAT
1 AACT-TAAATTAAAAT
40949736 AA-TTCAAACTTAAAAT
1 AACTT-AAA-TTAAAAT
* *
40949752 TACTTAAATAAAAAAT
1 AACTTAAAT-TAAAAT
40949768 AAC
1 AAC
40949771 CCGAATAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
14 1 0.02
15 4 0.10
16 29 0.71
17 7 0.17
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (15 bp):
AACTTAAATTAAAAT
Found at i:40951225 original size:151 final size:150
Alignment explanation
Indices: 40950942--40951231 Score: 413
Period size: 151 Copynumber: 1.9 Consensus size: 150
40950932 CCAAAACAAT
* * * * * *
40950942 ATAAATCTAAAGTGACCTAAATACAGCCGAAAGCTCAAACTAACTTAATTGAAATGATACAAAAA
1 ATAAATCTAAAATGACCCAAATACAACCGAAAACTCAAACAAACCTAATTGAAATGA-ACAAAAA
* *
40951007 ATTTAAAATCAACTCGATTCACCCATCGAACAATTTTTTAGTATGATTCAATTGTCAATTCAATC
65 ATTTAAAATCAACGCAATTCACCCATCGAACAATTTTTTAGTATGATTCAATTGTCAATT-AATC
*
40951072 AGTTCAATCTCTCAAAACCCAA
129 AGTTAAATCTCTCAAAACCCAA
* *
40951094 ATAAATCTAAAATGACCCAAATACAACTGAAAACTCAAAACAAACCTAATTGAAATG-ACACAAA
1 ATAAATCTAAAATGACCCAAATACAACCGAAAACTC-AAACAAACCTAATTGAAATGAACAAAAA
*
40951158 ATTTAAAATCAACGCAATTCACCCATCGAACAATTTTTTAGTATGATTCAATTGATTCAATT-GT
65 ATTTAAAATCAACGCAATTCACCCATCGAACAATTTTTTAGTATGATTCAATTG--TCAATTAAT
40951222 CAGTTAAATC
128 CAGTTAAATC
40951232 GGTCTAATCT
Statistics
Matches: 123, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
151 68 0.55
152 31 0.25
153 24 0.20
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (150 bp):
ATAAATCTAAAATGACCCAAATACAACCGAAAACTCAAACAAACCTAATTGAAATGAACAAAAAA
TTTAAAATCAACGCAATTCACCCATCGAACAATTTTTTAGTATGATTCAATTGTCAATTAATCAG
TTAAATCTCTCAAAACCCAA
Found at i:40953053 original size:17 final size:18
Alignment explanation
Indices: 40953019--40953058 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
40953009 AAAATGAAAA
**
40953019 AAATTTATTTAAGCTTTT
1 AAATTTATTTAAAATTTT
40953037 AAATTT-TTTAAAATTTT
1 AAATTTATTTAAAATTTT
40953054 AAATT
1 AAATT
40953059 AGTAAAGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (18 bp):
AAATTTATTTAAAATTTT
Found at i:40960139 original size:12 final size:12
Alignment explanation
Indices: 40960122--40960146 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
40960112 CTTTTACCAC
40960122 ACAAAATCGTAT
1 ACAAAATCGTAT
40960134 ACAAAATCGTAT
1 ACAAAATCGTAT
40960146 A
1 A
40960147 TTAACTCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24
Consensus pattern (12 bp):
ACAAAATCGTAT
Found at i:40966828 original size:22 final size:22
Alignment explanation
Indices: 40966803--40966847 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
40966793 AGTCCTGAGA
40966803 ACATTCAAGAACAAGTAAATCC
1 ACATTCAAGAACAAGTAAATCC
40966825 ACATTCAAGAACAAGTAAATCC
1 ACATTCAAGAACAAGTAAATCC
40966847 A
1 A
40966848 ATATTTTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.51, C:0.22, G:0.09, T:0.18
Consensus pattern (22 bp):
ACATTCAAGAACAAGTAAATCC
Found at i:40967192 original size:29 final size:30
Alignment explanation
Indices: 40967151--40967216 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
40967141 TAAGAACTAG
* * *
40967151 ATCAAATTAGTCCCTCTATTATT-AAATGA
1 ATCAAATTAGTCCCTATACTATTAAAAAGA
*
40967180 ATCAATTTAGTCCCTATACTATTAAAAAGA
1 ATCAAATTAGTCCCTATACTATTAAAAAGA
40967210 ATCAAAT
1 ATCAAAT
40967217 AAGTACAAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 20 0.65
30 11 0.35
ACGTcount: A:0.42, C:0.17, G:0.06, T:0.35
Consensus pattern (30 bp):
ATCAAATTAGTCCCTATACTATTAAAAAGA
Found at i:40967717 original size:2 final size:2
Alignment explanation
Indices: 40967661--40967698 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
40967651 CTGATGTCTT
40967661 TA TA TA TA TA TA TA TA T- TA TA T- TA TA T- TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
40967699 TCTGATGTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
1 3 0.09
2 30 0.91
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:40967807 original size:6 final size:6
Alignment explanation
Indices: 40967791--40967828 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
40967781 CACTTAATAG
*
40967791 CATATA TATATA CATATA CATATA CATATA -A-ATA CATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATA
40967829 AACACACATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
4 3 0.11
5 2 0.07
6 23 0.82
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (6 bp):
CATATA
Found at i:40967808 original size:12 final size:11
Alignment explanation
Indices: 40967791--40967841 Score: 52
Period size: 12 Copynumber: 4.6 Consensus size: 11
40967781 CACTTAATAG
40967791 CATATATATATA
1 CATATA-ATATA
40967803 CATATACATATA
1 CATATA-ATATA
40967815 CATATAA-ATA
1 CATATAATATA
* *
40967825 CATA-AACACA
1 CATATAATATA
40967835 CATATAA
1 CATATAA
40967842 ATATCATAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 2 0.06
10 13 0.37
11 3 0.09
12 17 0.49
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (11 bp):
CATATAATATA
Found at i:40968985 original size:23 final size:22
Alignment explanation
Indices: 40968948--40968990 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
40968938 ATAAATAATT
**
40968948 TATATGATACTTTTTATACAAAA
1 TATATGATAAATTTTA-ACAAAA
40968971 TATATGATAAATTTTAACAA
1 TATATGATAAATTTTAACAA
40968991 TCCTTGTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.42
Consensus pattern (22 bp):
TATATGATAAATTTTAACAAAA
Found at i:40971261 original size:18 final size:19
Alignment explanation
Indices: 40971214--40971267 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
40971204 TTATTATAAA
*
40971214 ACTTAATATAATATTTGGT
1 ACTTAATTTAATATTTGGT
*
40971233 ACTTAAATTTAATATTT-TT
1 ACTT-AATTTAATATTTGGT
* *
40971252 TCTTAATTTAGTATTT
1 ACTTAATTTAATATTT
40971268 AAATATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 11 0.37
19 8 0.27
20 11 0.37
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.56
Consensus pattern (19 bp):
ACTTAATTTAATATTTGGT
Found at i:40971630 original size:30 final size:29
Alignment explanation
Indices: 40971557--40971676 Score: 113
Period size: 30 Copynumber: 4.2 Consensus size: 29
40971547 TAGACCCCAA
* *
40971557 AAATTTAAGTACCAACTTAAAAAAAATGTC
1 AAATTTAAGTACCAAATT-AAAAAAATATC
* *
40971587 AAGTTT-AGATACCAATTTAAAAAAAGTATC
1 AAATTTAAG-TACCAAATTAAAAAAA-TATC
* * *
40971617 AAATTTGAGTACCAAATTGAACAAA-A--
1 AAATTTAAGTACCAAATTAAAAAAATATC
*
40971643 AAATTTAAATACCAAATTAAAAAAATATC
1 AAATTTAAGTACCAAATTAAAAAAATATC
40971672 AAATT
1 AAATT
40971677 CAAATATCAA
Statistics
Matches: 73, Mismatches: 11, Indels: 13
0.75 0.11 0.13
Matches are distributed among these distances:
26 21 0.29
27 1 0.01
28 1 0.01
29 14 0.19
30 34 0.47
31 2 0.03
ACGTcount: A:0.55, C:0.11, G:0.07, T:0.28
Consensus pattern (29 bp):
AAATTTAAGTACCAAATTAAAAAAATATC
Found at i:40971655 original size:26 final size:24
Alignment explanation
Indices: 40971617--40971667 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
40971607 AAAAAGTATC
* *
40971617 AAATTTGAGTACCAAATTGAACAAAA
1 AAATTTAAATACCAAATT-AA-AAAA
40971643 AAATTTAAATACCAAATTAAAAAA
1 AAATTTAAATACCAAATTAAAAAA
40971667 A
1 A
40971668 TATCAAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 16 0.70
ACGTcount: A:0.61, C:0.10, G:0.06, T:0.24
Consensus pattern (24 bp):
AAATTTAAATACCAAATTAAAAAA
Found at i:40982959 original size:16 final size:18
Alignment explanation
Indices: 40982920--40982959 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
40982910 TAAGTTTATA
40982920 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
40982937 ATTTTTATATATTAT-TT
1 ATATTTATATATTATGTT
40982954 A-ATTTA
1 ATATTTA
40982960 GAACACATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 4 0.20
17 8 0.40
18 8 0.40
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:40983084 original size:28 final size:28
Alignment explanation
Indices: 40983038--40983129 Score: 80
Period size: 33 Copynumber: 3.1 Consensus size: 28
40983028 TTAAGATGAT
*
40983038 TATATAAAAATTTTGAATAAATAAAA-AA
1 TATATAAAAATTTTAAAT-AATAAAATAA
*
40983066 TATAT-AAAATTATTAAATATTAAAATAA
1 TATATAAAAATT-TTAAATAATAAAATAA
*
40983094 TATAATATAAATATTTTTTAAATTATAAAATAA
1 TAT-ATA-AAA-A--TTTTAAATAATAAAATAA
40983127 TAT
1 TAT
40983130 GGACAAGCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
27 12 0.23
28 15 0.29
29 2 0.04
31 3 0.06
32 1 0.02
33 17 0.33
34 2 0.04
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (28 bp):
TATATAAAAATTTTAAATAATAAAATAA
Found at i:40983102 original size:33 final size:33
Alignment explanation
Indices: 40983056--40983129 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
40983046 AATTTTGAAT
*
40983056 AAATAA-AAAATATATAA-AATTATTAAA-TATTA
1 AAATAATATAATATA-AATAATTATTAAATTA-TA
* *
40983088 AAATAATATAATATAAATATTTTTTAAATTATA
1 AAATAATATAATATAAATAATTATTAAATTATA
40983121 AAATAATAT
1 AAATAATAT
40983130 GGACAAGCCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
32 8 0.22
33 26 0.72
34 2 0.06
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (33 bp):
AAATAATATAATATAAATAATTATTAAATTATA
Found at i:40993873 original size:16 final size:16
Alignment explanation
Indices: 40993854--40993888 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
40993844 AGCAACAATT
*
40993854 AAAATACAAGAATTAA
1 AAAATAAAAGAATTAA
*
40993870 AAAATAAAATAATTAA
1 AAAATAAAAGAATTAA
40993886 AAA
1 AAA
40993889 TAACCAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAATAAAAGAATTAA
Found at i:40993887 original size:15 final size:15
Alignment explanation
Indices: 40993850--40993891 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
40993840 ATTTAGCAAC
*
40993850 AATT-AAAATACAAG
1 AATTAAAAATAAAAG
*
40993864 AATTAAAAAATAAAAT
1 AATT-AAAAATAAAAG
40993880 AATTAAAAATAA
1 AATTAAAAATAA
40993892 CCAAAGTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 4 0.17
15 8 0.33
16 12 0.50
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (15 bp):
AATTAAAAATAAAAG
Found at i:40993991 original size:165 final size:165
Alignment explanation
Indices: 40993812--40994145 Score: 668
Period size: 165 Copynumber: 2.0 Consensus size: 165
40993802 AGATTACATT
40993812 GAAAATTGAAAGTAAAAAAAGTTAATAAATTTAGCAACAATTAAAATACAAGAATTAAAAAATAA
1 GAAAATTGAAAGTAAAAAAAGTTAATAAATTTAGCAACAATTAAAATACAAGAATTAAAAAATAA
40993877 AATAATTAAAAATAACCAAAGTAATAATAACAACATAATTTAACCTTTTCTAATCACTAAAAATT
66 AATAATTAAAAATAACCAAAGTAATAATAACAACATAATTTAACCTTTTCTAATCACTAAAAATT
40993942 TAAATCTTGAATTCCGACTATTTGAGCACTTAAAG
131 TAAATCTTGAATTCCGACTATTTGAGCACTTAAAG
40993977 GAAAATTGAAAGTAAAAAAAGTTAATAAATTTAGCAACAATTAAAATACAAGAATTAAAAAATAA
1 GAAAATTGAAAGTAAAAAAAGTTAATAAATTTAGCAACAATTAAAATACAAGAATTAAAAAATAA
40994042 AATAATTAAAAATAACCAAAGTAATAATAACAACATAATTTAACCTTTTCTAATCACTAAAAATT
66 AATAATTAAAAATAACCAAAGTAATAATAACAACATAATTTAACCTTTTCTAATCACTAAAAATT
40994107 TAAATCTTGAATTCCGACTATTTGAGCACTTAAAG
131 TAAATCTTGAATTCCGACTATTTGAGCACTTAAAG
40994142 GAAA
1 GAAA
40994146 GCTTCCCATG
Statistics
Matches: 169, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
165 169 1.00
ACGTcount: A:0.54, C:0.11, G:0.07, T:0.28
Consensus pattern (165 bp):
GAAAATTGAAAGTAAAAAAAGTTAATAAATTTAGCAACAATTAAAATACAAGAATTAAAAAATAA
AATAATTAAAAATAACCAAAGTAATAATAACAACATAATTTAACCTTTTCTAATCACTAAAAATT
TAAATCTTGAATTCCGACTATTTGAGCACTTAAAG
Found at i:40994038 original size:16 final size:16
Alignment explanation
Indices: 40994019--40994053 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
40994009 AGCAACAATT
*
40994019 AAAATACAAGAATTAA
1 AAAATAAAAGAATTAA
*
40994035 AAAATAAAATAATTAA
1 AAAATAAAAGAATTAA
40994051 AAA
1 AAA
40994054 TAACCAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAATAAAAGAATTAA
Found at i:40994052 original size:15 final size:15
Alignment explanation
Indices: 40994015--40994056 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
40994005 ATTTAGCAAC
*
40994015 AATT-AAAATACAAG
1 AATTAAAAATAAAAG
*
40994029 AATTAAAAAATAAAAT
1 AATT-AAAAATAAAAG
40994045 AATTAAAAATAA
1 AATTAAAAATAA
40994057 CCAAAGTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 4 0.17
15 8 0.33
16 12 0.50
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (15 bp):
AATTAAAAATAAAAG
Found at i:40994296 original size:16 final size:18
Alignment explanation
Indices: 40994277--40994315 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
40994267 TTAAATTATA
40994277 ATTTTAT-TATTT-TAAT
1 ATTTTATATATTTATAAT
40994293 ATTTTATATATTTATAAT
1 ATTTTATATATTTATAAT
40994311 -TTTTA
1 ATTTTA
40994316 AAAAGTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 10 0.48
18 4 0.19
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTATATATTTATAAT
Found at i:40994366 original size:30 final size:29
Alignment explanation
Indices: 40994297--40994366 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 29
40994287 TTTAATATTT
*
40994297 TATATATTTATAATTTTTAAAAAGTAAAA
1 TATAAATTTATAATTTTTAAAAAGTAAAA
*
40994326 TAAAATATTTAT-ATTTTTAAGAGAA-TCAAAA
1 TATAA-ATTTATAATTTTTAA-A-AAGT-AAAA
40994357 TATAAATTTA
1 TATAAATTTA
40994367 CGGTTACTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
29 11 0.32
30 13 0.38
31 10 0.29
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.43
Consensus pattern (29 bp):
TATAAATTTATAATTTTTAAAAAGTAAAA
Found at i:41008398 original size:15 final size:16
Alignment explanation
Indices: 41008369--41008399 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
41008359 AATATATTTT
41008369 TTCAATTATATTAATA
1 TTCAATTATATTAATA
41008385 TTCAATTA-ATTAATA
1 TTCAATTATATTAATA
41008400 ACAATAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (16 bp):
TTCAATTATATTAATA
Found at i:41013132 original size:31 final size:31
Alignment explanation
Indices: 41013096--41013156 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
41013086 TTTAAAAAAA
41013096 AAATAGTCCAATGAGTTAAATAAAAACTTTC
1 AAATAGTCCAATGAGTTAAATAAAAACTTTC
** * *
41013127 AAATAGTTTAGTGATTTAAATAAAAACTTT
1 AAATAGTCCAATGAGTTAAATAAAAACTTT
41013157 TGACTAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.34
Consensus pattern (31 bp):
AAATAGTCCAATGAGTTAAATAAAAACTTTC
Found at i:41016444 original size:31 final size:31
Alignment explanation
Indices: 41016406--41016514 Score: 112
Period size: 31 Copynumber: 3.5 Consensus size: 31
41016396 AAAAAGCTCA
*
41016406 ATATTCAATTTGGTACTTGAGCTTGGCTTTG
1 ATATTCAATTTGGTACCTGAGCTTGGCTTTG
* * *
41016437 ATATTCAATTTGTTACCTGAGCTTGGTTTTA
1 ATATTCAATTTGGTACCTGAGCTTGGCTTTG
** * *
41016468 ATATTCTGTTTGGTACCTAATG-TTTGCTTTG
1 ATATTCAATTTGGTACCTGA-GCTTGGCTTTG
* *
41016499 ATGTTCTATTTGGTAC
1 ATATTCAATTTGGTAC
41016515 TAAAATCAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
31 63 0.98
32 1 0.02
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.49
Consensus pattern (31 bp):
ATATTCAATTTGGTACCTGAGCTTGGCTTTG
Found at i:41023439 original size:17 final size:18
Alignment explanation
Indices: 41023409--41023444 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
41023399 TAAACCATAC
*
41023409 AAAATGAAATAAAATATA
1 AAAATGAAAAAAAATATA
41023427 AAAAT-AAAAAAAATATA
1 AAAATGAAAAAAAATATA
41023444 A
1 A
41023445 TTTAAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (18 bp):
AAAATGAAAAAAAATATA
Found at i:41028433 original size:3 final size:3
Alignment explanation
Indices: 41028425--41028450 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
41028415 CAGCATTCTG
41028425 CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CA
41028451 GCCGTTCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:41033773 original size:29 final size:29
Alignment explanation
Indices: 41033731--41033790 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
41033721 TATACTCTTC
**
41033731 AAAATCAACCTATTTCTCCAAATATAAAAA
1 AAAATCAACCTATTTAACCAAATA-AAAAA
*
41033761 AAAAT-AACTTATTTAACCAAATAAAAAA
1 AAAATCAACCTATTTAACCAAATAAAAAA
41033789 AA
1 AA
41033791 TCGACAGGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 7 0.26
29 15 0.56
30 5 0.19
ACGTcount: A:0.60, C:0.15, G:0.00, T:0.25
Consensus pattern (29 bp):
AAAATCAACCTATTTAACCAAATAAAAAA
Found at i:41041351 original size:14 final size:14
Alignment explanation
Indices: 41041332--41041359 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
41041322 TAACCCTAAA
41041332 ATTTATTTAATATT
1 ATTTATTTAATATT
41041346 ATTTATTTAATATT
1 ATTTATTTAATATT
41041360 TATAAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
ATTTATTTAATATT
Found at i:41043131 original size:57 final size:57
Alignment explanation
Indices: 41043043--41043151 Score: 209
Period size: 57 Copynumber: 1.9 Consensus size: 57
41043033 CTACCCCGAC
*
41043043 GACAGGTTCAACACCACAAGGATCAGGGTCGGAATCAGGGTTAACTTATTCGTCGAT
1 GACAGGGTCAACACCACAAGGATCAGGGTCGGAATCAGGGTTAACTTATTCGTCGAT
41043100 GACAGGGTCAACACCACAAGGATCAGGGTCGGAATCAGGGTTAACTTATTCG
1 GACAGGGTCAACACCACAAGGATCAGGGTCGGAATCAGGGTTAACTTATTCG
41043152 GGTAACGGTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (57 bp):
GACAGGGTCAACACCACAAGGATCAGGGTCGGAATCAGGGTTAACTTATTCGTCGAT
Found at i:41043232 original size:36 final size:35
Alignment explanation
Indices: 41043185--41043276 Score: 130
Period size: 36 Copynumber: 2.6 Consensus size: 35
41043175 TTCAGGTTCT
*
41043185 GGTTATGGATACTCGGGTTCAGGGTATTTGAATTCC
1 GGTTATGGATACTCGGGTTCAGGGTATTCGAATT-C
* *
41043221 GGTTATGGATACTCGGGTTCAGGGTCTTCGAGTTC
1 GGTTATGGATACTCGGGTTCAGGGTATTCGAATTC
*
41043256 GGAATATGGATACTCGGGTTC
1 GG-TTATGGATACTCGGGTTC
41043277 GATCTCCAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 3 0.06
36 48 0.94
ACGTcount: A:0.18, C:0.15, G:0.33, T:0.34
Consensus pattern (35 bp):
GGTTATGGATACTCGGGTTCAGGGTATTCGAATTC
Found at i:41048783 original size:15 final size:15
Alignment explanation
Indices: 41048763--41048796 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
41048753 ATTAAAAGAA
41048763 AAATTCAATCGAATT
1 AAATTCAATCGAATT
* *
41048778 AAATTCACTCTAATT
1 AAATTCAATCGAATT
41048793 AAAT
1 AAAT
41048797 GATTTTAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (15 bp):
AAATTCAATCGAATT
Found at i:41050574 original size:18 final size:19
Alignment explanation
Indices: 41050538--41050575 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
41050528 AAGTGATAAT
41050538 GTCACCTAACTACATTAGTA
1 GTCACCTAACTA-ATTAGTA
41050558 GTCACCTAACT-ATTAGTA
1 GTCACCTAACTAATTAGTA
41050576 AATTTCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (19 bp):
GTCACCTAACTAATTAGTA
Found at i:41051646 original size:101 final size:100
Alignment explanation
Indices: 41051524--41052633 Score: 818
Period size: 101 Copynumber: 11.0 Consensus size: 100
41051514 CATCTATATT
** * * * * * *
41051524 ACGAGATTTGACGGTTATATAAACCTTCCATCATAATTTGAGGAAGATAAGTGAAATATACACAA
1 ACGAGATTTGA-GGGCATATAAGCCTTCCATCATAACTTGAGGGAGACAAGTGAACTATACACGA
41051589 TCTACACGTGACTTTTACATGCTACACACTTGTCCC
65 TCTACACGTGACTTTTACATGCTACACACTTGTCCC
* * * *
41051625 ATGAGATTTGAGGGGCATATAAGCC-TCCAATCATAA-TTGGGGGGAGACAAGTGGACTATACAA
1 ACGAGATTTGA-GGGCATATAAGCCTTCC-ATCATAACTT-GAGGGAGACAAGTGAACTATACAC
* * * * * *
41051688 GATCTACAATGTGATTTTTAAATACCACACACTTGTCCT
63 GATCTAC-ACGTGACTTTTACATGCTACACACTTGTCCC
* ** * * *
41051727 ATGAGATTTGATGGTTATATAAGCCTTCCATCATAGCTTGAGGGAGACAAATGAATTATACACGA
1 ACGAGATTTGA-GGGCATATAAGCCTTCCATCATAACTTGAGGGAGACAAGTGAACTATACACGA
* * *
41051792 -CTTACACGTGGCCTTTACATGCT-CTGCACTTGTCCC
65 TC-TACACGTGACTTTTACATGCTAC-ACACTTGTCCC
* * * * * *
41051828 ACAAGACTTGATGGCTATATAAGCCTCCCATCATAACTTGAGGGAGACAAGTGAACTATGCACAA
1 ACGAGATTTGAGGGC-ATATAAGCCTTCCATCATAACTTGAGGGAGACAAGTGAACTATACACGA
* * *
41051893 TCTACATGTGATTTTTACATGCTACACATTTGTCCC
65 TCTACACGTGACTTTTACATGCTACACACTTGTCCC
* * *
41051929 ATGAGATTTGAGGGGCATATAAGCC-TCCTATCATAA-TTAGAGGGAGACAAGTGGACAATACAC
1 ACGAGATTTGA-GGGCATATAAGCCTTCC-ATCATAACTT-GAGGGAGACAAGTGAACTATACAC
* * * * * * *
41051992 GATATGCACGTGACTTTTAAATCCCACACATTTGTCCT
63 GATCTACACGTGACTTTTACATGCTACACACTTGTCCC
* * * * * *
41052030 ACGAAATTTGATGGCTATATAAGCCTCCCATCATACCTTGAGGGAGACAAATGAACTATACAGGA
1 ACGAGATTTGAGGGC-ATATAAGCCTTCCATCATAACTTGAGGGAGACAAGTGAACTATACACGA
* * * *
41052095 -CTTATATGTGTCCTTTACATGCT-CTACACTTGTCCC
65 TC-TACACGTGACTTTTACATGCTAC-ACACTTGTCCC
* * * * *
41052131 ACAAGACTTGATGGCTATATAAGCCTACCATC---A--TGAGGGAGACAAGTGAACTATACACAA
1 ACGAGATTTGAGGGC-ATATAAGCCTTCCATCATAACTTGAGGGAGACAAGTGAACTATACACGA
** * ** *
41052191 TCTACACGTGACCATTACATGTTATGCACTTGTCTC
65 TCTACACGTGACTTTTACATGCTACACACTTGTCCC
* * *
41052227 ATGAGATTTGAGGGGCATATAAGCCTCCCATCATAA-TTGGGGGGGGGGAGACAAGT-AGACTAT
1 ACGAGATTTGA-GGGCATATAAGCCTTCCATCATAACTT-----GAGGGAGACAAGTGA-ACTAT
* * * * * *
41052290 ACATGATCTATACGTAACTTTTAAATGCCACACACTTGTCCT
59 ACACGATCTACACGTGACTTTTACATGCTACACACTTGTCCC
** ** * * * *
41052332 ATAAGATTTGATGGTTATATAAACCTTCCATCATAACTTAAGGGAAACAAGTGAACTATACATGA
1 ACGAGATTTGA-GGGCATATAAGCCTTCCATCATAACTTGAGGGAGACAAGTGAACTATACACGA
* * * * * *
41052397 -CTTACATGTGGCCTTTACATGCTCCAGACTTATCCC
65 TC-TACACGTGACTTTTACATGCTACACACTTGTCCC
* * * * * * * * *
41052433 ACAAAACTTGATGGCTATATAAGCCTCCCATTACAACTTAAGGGAGACAAGTGAACTATACACAA
1 ACGAGATTTGAGGGC-ATATAAGCCTTCCATCATAACTTGAGGGAGACAAGTGAACTATACACGA
* *
41052498 TCTACACGTGACCTTTACATGCTCCACACTTGTCCC
65 TCTACACGTGACTTTTACATGCTACACACTTGTCCC
* * * * ** *
41052534 ACGAAATTTAAAAGGCATATAAGACTTTTA-CTATAA-TTGAAGGGAGACAAGTGAACAATACAC
1 ACGAGATTT-GAGGGCATATAAGCCTTCCATC-ATAACTTG-AGGGAGACAAGTGAACTATACAC
* * *
41052597 GATCTACACATGA-TATTTACACGCCACACACTTGTCC
63 GATCTACACGTGACT-TTTACATGCTACACACTTGTCC
41052634 TACAAAATTT
Statistics
Matches: 788, Mismatches: 181, Indels: 80
0.75 0.17 0.08
Matches are distributed among these distances:
96 72 0.09
97 4 0.01
99 1 0.00
100 20 0.03
101 515 0.65
102 92 0.12
103 5 0.01
104 1 0.00
105 76 0.10
106 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (100 bp):
ACGAGATTTGAGGGCATATAAGCCTTCCATCATAACTTGAGGGAGACAAGTGAACTATACACGAT
CTACACGTGACTTTTACATGCTACACACTTGTCCC
Found at i:41056230 original size:15 final size:17
Alignment explanation
Indices: 41056196--41056233 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
41056186 AATAAAAATG
41056196 TAATTTCATCATTTTAA
1 TAATTTCATCATTTTAA
*
41056213 TAATTT-AT-ATTTTTA
1 TAATTTCATCATTTTAA
41056228 TAATTT
1 TAATTT
41056234 TTAAAGAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 12 0.60
16 2 0.10
17 6 0.30
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (17 bp):
TAATTTCATCATTTTAA
Found at i:41056579 original size:2 final size:2
Alignment explanation
Indices: 41056572--41056599 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
41056562 CGATTCATCG
41056572 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
41056600 GAACTGAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:41060463 original size:8 final size:8
Alignment explanation
Indices: 41060450--41060474 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
41060440 ATGATCCTGG
41060450 AGAACTGT
1 AGAACTGT
41060458 AGAACTGT
1 AGAACTGT
41060466 AGAACTGT
1 AGAACTGT
41060474 A
1 A
41060475 AATGAACCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (8 bp):
AGAACTGT
Done.