Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 25 of 135
Found at i:6646249 original size:5 final size:5
Alignment explanation
Indices: 6646241--6646290 Score: 50
Period size: 5 Copynumber: 9.6 Consensus size: 5
6646231 AAAAAAAGAA
6646241 AAAAG AAAAG AAAAG AAAAG AAGACA- AAAAG AAAA- AAGAAG AAAAAG
1 AAAAG AAAAG AAAAG AAAAG AA-A-AG AAAAG AAAAG AA-AAG -AAAAG
6646288 AAA
1 AAA
6646291 GTCAAGACGA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
4 3 0.08
5 27 0.69
6 6 0.15
7 3 0.08
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:6646259 original size:15 final size:16
Alignment explanation
Indices: 6646241--6646290 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
6646231 AAAAAAAGAA
6646241 AAAAGAA-AAGAAAAG
1 AAAAGAAGAAGAAAAG
6646256 AAAAGAAGACA-AAAAG
1 AAAAGAAGA-AGAAAAG
6646272 AAAA-AAGAAGAAAAAG
1 AAAAGAAGAAG-AAAAG
6646288 AAA
1 AAA
6646291 GTCAAGACGA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
14 1 0.03
15 11 0.35
16 18 0.58
17 1 0.03
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAGAAGAAGAAAAG
Found at i:6648316 original size:49 final size:49
Alignment explanation
Indices: 6648189--6648611 Score: 379
Period size: 49 Copynumber: 8.6 Consensus size: 49
6648179 CAGGTTTCAT
* * * * *
6648189 TACCACGAAGATATGAAGGGAAAGGTTGA-GG-CTGCAACGGTAAACCCGA
1 TACCATGAAGATTTGAAGGGAAAGGTT-ACGGTC-GTAACGGTGAACCCGG
* * * * *
6648238 TACCTTAGAAGATGTGATGGGAAAGGTTACGGTCGTAACGGTAAACCCGA
1 TACCAT-GAAGATTTGAAGGGAAAGGTTACGGTCGTAACGGTGAACCCGG
* * *
6648288 TACCATGAAGATTTGAAGGGAAAGGTTACGATCGTAACGATGAACCCGA
1 TACCATGAAGATTTGAAGGGAAAGGTTACGGTCGTAACGGTGAACCCGG
* * * *
6648337 TACCATAAAGATTTAAAGGGAAAGGTTACGGGCGTAACGGTGAACCTGG
1 TACCATGAAGATTTGAAGGGAAAGGTTACGGTCGTAACGGTGAACCCGG
* * * * * * **
6648386 TACCTTAGAAGATGTGATGGGAAAGGTTACAGTCGTAACAGCGAATTCGG
1 TACCAT-GAAGATTTGAAGGGAAAGGTTACGGTCGTAACGGTGAACCCGG
* * *
6648436 TACCATGAAGATTTG-AGAGGAAAGGTTAC-GACTGCAACGGTGAACTCGG
1 TACCATGAAGATTTGAAG-GGAAAGGTTACGGTC-GTAACGGTGAACCCGG
* ** * *
6648485 TAACATGAAGATTTGAAGGGAAAGGTTACGACCGTAACAGCGAACCCGG
1 TACCATGAAGATTTGAAGGGAAAGGTTACGGTCGTAACGGTGAACCCGG
* * * * * *
6648534 TACCTTAGAAGATCTGATGGGAAAGGTTACGG-CCTCAACGGCGAACCCTG
1 TACCAT-GAAGATTTGAAGGGAAAGGTTACGGTCGT-AACGGTGAACCCGG
*
6648584 TACCATGAAGATTTAAAGGGAAAGGTTA
1 TACCATGAAGATTTGAAGGGAAAGGTTA
6648612 AGACCGCAAT
Statistics
Matches: 307, Mismatches: 57, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
48 3 0.01
49 183 0.60
50 120 0.39
51 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (49 bp):
TACCATGAAGATTTGAAGGGAAAGGTTACGGTCGTAACGGTGAACCCGG
Found at i:6648397 original size:99 final size:98
Alignment explanation
Indices: 6648231--6648611 Score: 398
Period size: 99 Copynumber: 3.9 Consensus size: 98
6648221 TGCAACGGTA
* * * * * *
6648231 AACCCGATACCTTAGAAGATGTGATGGGAAAGGTTACGGTCGTAACGGTAAACCCGATACCATGA
1 AACCCGATACCATAGAAGATTTGAAGGGAAAGGTTACGG-CGTAACGGTGAACCTGGTACCATGA
*
6648296 AGATTTGAAGGGAAAGGTTACGATCGTAAC-GATG
65 AGATTTGAAGGGAAAGGTTACGATCGTAACAG-CG
* *
6648330 AACCCGATACCATA-AAGATTTAAAGGGAAAGGTTACGGGCGTAACGGTGAACCTGGTACCTTAG
1 AACCCGATACCATAGAAGATTTGAAGGGAAAGGTTAC-GGCGTAACGGTGAACCTGGTACCAT-G
* *
6648394 AAGATGTGATGGGAAAGGTTAC-AGTCGTAACAGCG
64 AAGATTTGAAGGGAAAGGTTACGA-TCGTAACAGCG
** * * * *
6648429 AATTCGGTACCAT-GAAGATTTG-AGAGGAAAGGTTACGACTGCAACGGTGAA-CTCGGTAACAT
1 AACCCGATACCATAGAAGATTTGAAG-GGAAAGGTTACGGC-GTAACGGTGAACCT-GGTACCAT
*
6648491 GAAGATTTGAAGGGAAAGGTTACGACCGTAACAGCG
63 GAAGATTTGAAGGGAAAGGTTACGATCGTAACAGCG
* * * * * *
6648527 AACCCGGTACCTTAGAAGATCTGATGGGAAAGGTTACGGCCTCAACGGCGAACCCT-GTACCATG
1 AACCCGATACCATAGAAGATTTGAAGGGAAAGGTTACGGCGT-AACGGTGAA-CCTGGTACCATG
*
6648591 AAGATTTAAAGGGAAAGGTTA
64 AAGATTTGAAGGGAAAGGTTA
6648612 AGACCGCAAT
Statistics
Matches: 235, Mismatches: 33, Indels: 28
0.79 0.11 0.09
Matches are distributed among these distances:
98 86 0.37
99 145 0.62
100 2 0.01
101 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (98 bp):
AACCCGATACCATAGAAGATTTGAAGGGAAAGGTTACGGCGTAACGGTGAACCTGGTACCATGAA
GATTTGAAGGGAAAGGTTACGATCGTAACAGCG
Found at i:6648458 original size:148 final size:147
Alignment explanation
Indices: 6648224--6648620 Score: 492
Period size: 148 Copynumber: 2.7 Consensus size: 147
6648214 TTGAGGCTGC
* * ** *
6648224 AACGGTAAACCCGATACCTTAGAAGATGTGATGGGAAAGGTTACGGTCGTAACGGTAAACCCGAT
1 AACGGTGAACCCGGTACCTTAGAAGATGTGATGGGAAAGGTTAC-GTCGTAACGGCGAACCCGGT
* *
6648289 ACCATGAAGATTTGAAGGGAAAGGTTACGA-TCGTAACGATGAACCCGATACCATAAAGATTTAA
65 ACCATGAAGATTTGAAGGGAAAGGTTACGACT-GCAACGATGAACCCGATAACATAAAGATTTAA
**
6648353 AGGGAAAGGTTACGGGCGT
129 AGGGAAAGGTTACGACCGT
* * **
6648372 AACGGTGAACCTGGTACCTTAGAAGATGTGATGGGAAAGGTTACAGTCGTAACAGCGAATTCGGT
1 AACGGTGAACCCGGTACCTTAGAAGATGTGATGGGAAAGGTTAC-GTCGTAACGGCGAACCCGGT
* * * * *
6648437 ACCATGAAGATTTG-AGAGGAAAGGTTACGACTGCAACGGTGAACTCGGTAACATGAAGATTTGA
65 ACCATGAAGATTTGAAG-GGAAAGGTTACGACTGCAACGATGAACCCGATAACATAAAGATTTAA
6648501 AGGGAAAGGTTACGACCGT
129 AGGGAAAGGTTACGACCGT
* * * * * *
6648520 AACAGCGAACCCGGTACCTTAGAAGATCTGATGGGAAAGGTTACGGCCTCAACGGCGAACCCTGT
1 AACGGTGAACCCGGTACCTTAGAAGATGTGATGGGAAAGGTTACGTCGT-AACGGCGAACCCGGT
* * *
6648585 ACCATGAAGATTTAAAGGGAAAGGTTAAGACCGCAA
65 ACCATGAAGATTTGAAGGGAAAGGTTACGACTGCAA
6648621 TGACAAAATC
Statistics
Matches: 213, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
147 5 0.02
148 205 0.96
149 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (147 bp):
AACGGTGAACCCGGTACCTTAGAAGATGTGATGGGAAAGGTTACGTCGTAACGGCGAACCCGGTA
CCATGAAGATTTGAAGGGAAAGGTTACGACTGCAACGATGAACCCGATAACATAAAGATTTAAAG
GGAAAGGTTACGACCGT
Found at i:6648617 original size:99 final size:98
Alignment explanation
Indices: 6648189--6648617 Score: 379
Period size: 99 Copynumber: 4.3 Consensus size: 98
6648179 CAGGTTTCAT
* * * * * * * ** * *
6648189 TACCACGAAGATATGAAGGGAAAGGTTGAGGCTGCAACGGTAAACCCGATACCTTAGAAGATGTG
1 TACCATGAAGATTTGAAGGGAAAGGTTAAGACCGTAACAGCGAACCCGATACCATAGAAGATTTG
* *
6648254 ATGGGAAAGGTTACGGTCGTAACGGTAAACCC-G
66 ATGGGAAAGGTTACGG-CCTAACGGTGAACCCTG
* * *
6648287 ATACCATGAAGATTTGAAGGGAAAGGTTACGATCGTAAC-GATGAACCCGATACCATA-AAGATT
1 -TACCATGAAGATTTGAAGGGAAAGGTTAAGACCGTAACAG-CGAACCCGATACCATAGAAGATT
* * *
6648350 TAAAGGGAAAGGTTACGGGCGTAACGGTGAA-CCTGG
64 TGATGGGAAAGGTTAC-GGCCTAACGGTGAACCCT-G
* * * * ** *
6648386 TACCTTAGAAGATGTGATGGGAAAGGTTACAG-TCGTAACAGCGAATTCGGTACCAT-GAAGATT
1 TACCAT-GAAGATTTGAAGGGAAAGGTTA-AGACCGTAACAGCGAACCCGATACCATAGAAGATT
* * *
6648449 TGA-GAGGAAAGGTTAC-GACTGCAACGGTGAACTCGG
64 TGATG-GGAAAGGTTACGGCCT--AACGGTGAACCCTG
* * * * *
6648485 TAACATGAAGATTTGAAGGGAAAGGTTACGACCGTAACAGCGAACCCGGTACCTTAGAAGATCTG
1 TACCATGAAGATTTGAAGGGAAAGGTTAAGACCGTAACAGCGAACCCGATACCATAGAAGATTTG
*
6648550 ATGGGAAAGGTTACGGCCTCAACGGCGAACCCTG
66 ATGGGAAAGGTTACGGCCT-AACGGTGAACCCTG
*
6648584 TACCATGAAGATTTAAAGGGAAAGGTTAAGACCG
1 TACCATGAAGATTTGAAGGGAAAGGTTAAGACCG
6648618 CAATGACAAA
Statistics
Matches: 270, Mismatches: 44, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
97 5 0.02
98 77 0.29
99 181 0.67
100 7 0.03
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (98 bp):
TACCATGAAGATTTGAAGGGAAAGGTTAAGACCGTAACAGCGAACCCGATACCATAGAAGATTTG
ATGGGAAAGGTTACGGCCTAACGGTGAACCCTG
Found at i:6648636 original size:49 final size:49
Alignment explanation
Indices: 6648288--6648657 Score: 273
Period size: 49 Copynumber: 7.5 Consensus size: 49
6648278 GTAAACCCGA
* * * * *
6648288 TACCATGAAGATTTGAAGGGAAAGGTTACGATCGTAACGATGAACCCGA
1 TACCATGAAGATTTGAAGGGAAAGGTTACGACCGCAACGACGAACTCGG
* * ** * **
6648337 TACCATAAAGATTTAAAGGGAAAGGTTACGGGCGTAACGGTGAAC-CTGG
1 TACCATGAAGATTTGAAGGGAAAGGTTACGACCGCAACGACGAACTC-GG
* * * * * *
6648386 TACCTTAGAAGATGTGATGGGAAAGGTTAC-AGTCGTAAC-AGCGAATTCGG
1 TACCAT-GAAGATTTGAAGGGAAAGGTTACGA-CCGCAACGA-CGAACTCGG
* **
6648436 TACCATGAAGATTTG-AGAGGAAAGGTTACGACTGCAACGGTGAACTCGG
1 TACCATGAAGATTTGAAG-GGAAAGGTTACGACCGCAACGACGAACTCGG
* * *
6648485 TAACATGAAGATTTGAAGGGAAAGGTTACGACCGTAAC-AGCGAACCCGG
1 TACCATGAAGATTTGAAGGGAAAGGTTACGACCGCAACGA-CGAACTCGG
* * * * * * * *
6648534 TACCTTAGAAGATCTGATGGGAAAGGTTACGGCCTCAACGGCGAACCCTG
1 TACCAT-GAAGATTTGAAGGGAAAGGTTACGACCGCAACGACGAACTCGG
* * * * *
6648584 TACCATGAAGATTTAAAGGGAAAGGTTAAGACCGCAATGACAAAATCGG
1 TACCATGAAGATTTGAAGGGAAAGGTTACGACCGCAACGACGAACTCGG
* * *
6648633 TACCTTAGAAAATATGAAGGGAAAG
1 TACCAT-GAAGATTTGAAGGGAAAG
6648658 ATTTAAACCG
Statistics
Matches: 251, Mismatches: 57, Indels: 25
0.75 0.17 0.08
Matches are distributed among these distances:
48 2 0.01
49 155 0.62
50 93 0.37
51 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (49 bp):
TACCATGAAGATTTGAAGGGAAAGGTTACGACCGCAACGACGAACTCGG
Found at i:6648672 original size:99 final size:99
Alignment explanation
Indices: 6648454--6648673 Score: 228
Period size: 99 Copynumber: 2.2 Consensus size: 99
6648444 AGATTTGAGA
* * * * * *
6648454 GGAAAGGTTACGACTGCAACGGTGAACTCGGTAACATGAAGATTTGAAGGGAAAGGTTACGACCG
1 GGAAAGGTTACAACCGCAACGGCGAACCCGGTAACATGAAGATTTAAAGGGAAAGGTTAAGACCG
* * * * * *
6648519 TAACAGCGAACCCGGTACCTTAGAAGATCTGATG
66 CAACAGCAAAACCGGTACCTTAGAAAATATGAAG
** * * *
6648553 GGAAAGGTTACGGCCTCAACGGCGAACCCTGTACCATGAAGATTTAAAGGGAAAGGTTAAGACCG
1 GGAAAGGTTACAACCGCAACGGCGAACCCGGTAACATGAAGATTTAAAGGGAAAGGTTAAGACCG
* *
6648618 CAA-TGACAAAATCGGTACCTTAGAAAATATGAAG
66 CAACAG-CAAAACCGGTACCTTAGAAAATATGAAG
*
6648652 GGAAAGATTTA-AACCGCAACGG
1 GGAAAG-GTTACAACCGCAACGG
6648674 TGATTCTAGT
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
98 1 0.01
99 94 0.96
100 3 0.03
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.18
Consensus pattern (99 bp):
GGAAAGGTTACAACCGCAACGGCGAACCCGGTAACATGAAGATTTAAAGGGAAAGGTTAAGACCG
CAACAGCAAAACCGGTACCTTAGAAAATATGAAG
Found at i:6648735 original size:49 final size:49
Alignment explanation
Indices: 6648682--6649127 Score: 202
Period size: 49 Copynumber: 9.1 Consensus size: 49
6648672 GGTGATTCTA
*
6648682 GTACCACGAAGCTATGGAGGGAAAGGTTTAAGTCACAATGGCAAACCTT
1 GTACCACGAAGCTATGGAGGGAAAGGTTTAAGTCACAATGGCGAACCTT
* * * * * * * *
6648731 GTACCTCAGAAAC-GTGAAGGGAAAGATTTAAG-CTACAACGGCGAATCTA
1 GTACCAC-GAAGCTATGGAGGGAAAGGTTTAAGTC-ACAATGGCGAACCTT
* * * *
6648780 GTGCCACGAAGCTGTGGAGGAAAAGGTTTAAGTCGCAATGGCGAACCTT
1 GTACCACGAAGCTATGGAGGGAAAGGTTTAAGTCACAATGGCGAACCTT
* * * * * * ** * *
6648829 GTACCTCAGAAAC-ATGAAGGGAAAGATTTAAGTCGCTATGTTGAATCTG
1 GTACCAC-GAAGCTATGGAGGGAAAGGTTTAAGTCACAATGGCGAACCTT
* *** * *
6648878 GTACCACGAAGATATGGAGGGAAAGGTTTAAGTTGTAACGGTGAACCTT
1 GTACCACGAAGCTATGGAGGGAAAGGTTTAAGTCACAATGGCGAACCTT
* * * ** * * * * ** * *
6648927 GTACCTCAAAAAC-ATGCTGGGAAAGATTGAAGCCACAACGGTAAATCTG
1 GTACCAC-GAAGCTATGGAGGGAAAGGTTTAAGTCACAATGGCGAACCTT
* * ** * * * *
6648976 GTACTACGAAGATATATAGGGAAAGGCTTAAGTCGCAACGACGAACCTT
1 GTACCACGAAGCTATGGAGGGAAAGGTTTAAGTCACAATGGCGAACCTT
* * ** * * * * * * * *
6649025 ATACCTTA-GAAAC-ATGCTGGGAAAGATTGAAGCCGCAACGGCGGATCTG
1 GTACC--ACGAAGCTATGGAGGGAAAGGTTTAAGTCACAATGGCGAACCTT
* * * *
6649074 GTACCACGAAGATATAGAGGGAAAGGTTTAAGTCGCAACGGCGAACCTT
1 GTACCACGAAGCTATGGAGGGAAAGGTTTAAGTCACAATGGCGAACCTT
6649123 GTACC
1 GTACC
6649128 TAAAAAATTT
Statistics
Matches: 282, Mismatches: 103, Indels: 24
0.69 0.25 0.06
Matches are distributed among these distances:
47 1 0.00
48 13 0.05
49 253 0.90
50 14 0.05
51 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.21
Consensus pattern (49 bp):
GTACCACGAAGCTATGGAGGGAAAGGTTTAAGTCACAATGGCGAACCTT
Found at i:6648787 original size:98 final size:98
Alignment explanation
Indices: 6648632--6649171 Score: 576
Period size: 98 Copynumber: 5.5 Consensus size: 98
6648622 GACAAAATCG
* * * * * * *
6648632 GTACCTTAGAAAATATGAAGGGAAAGATTTAAACCGCAACGGTGATTCTAGTACCACGAAGCTAT
1 GTACCTCAG-AAACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTGGTACCACGAAGATAT
* * *
6648697 GGAGGGAAAGGTTTAAGTCACAATGGCAAACCTT
65 GGAGGGAAAGGTTTAAGTCGCAACGGCGAACCTT
* ** * * * *
6648731 GTACCTCAGAAACGTGAAGGGAAAGATTTAAGCTACAACGGCGAATCTAGTGCCACGAAGCTGTG
1 GTACCTCAGAAACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTGGTACCACGAAGATATG
* *
6648796 GAGGAAAAGGTTTAAGTCGCAATGGCGAACCTT
66 GAGGGAAAGGTTTAAGTCGCAACGGCGAACCTT
* * * **
6648829 GTACCTCAGAAACATGAAGGGAAAGATTTAAGTCGCTATGTTGAATCTGGTACCACGAAGATATG
1 GTACCTCAGAAACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTGGTACCACGAAGATATG
* * *
6648894 GAGGGAAAGGTTTAAGTTGTAACGGTGAACCTT
66 GAGGGAAAGGTTTAAGTCGCAACGGCGAACCTT
* ** * * ** * *
6648927 GTACCTCAAAAACATGCTGGGAAAGATTGAAGCCACAACGGTAAATCTGGTACTACGAAGATATA
1 GTACCTCAGAAACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTGGTACCACGAAGATATG
* * *
6648992 TAGGGAAAGGCTTAAGTCGCAACGACGAACCTT
66 GAGGGAAAGGTTTAAGTCGCAACGGCGAACCTT
* * ** * * *
6649025 ATACCTTAGAAACATGCTGGGAAAGATTGAAGCCGCAACGGCGGATCTGGTACCACGAAGATATA
1 GTACCTCAGAAACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTGGTACCACGAAGATATG
6649090 GAGGGAAAGGTTTAAGTCGCAACGGCGAACCTT
66 GAGGGAAAGGTTTAAGTCGCAACGGCGAACCTT
* * ** * * * *
6649123 GTACCTAAAAAATTTGACAGGGAAAGATTAAAGCTGTAATGGCGAATCT
1 GTACCTCAGAAACATGA-AGGGAAAGATTTAAGCCGCAACGGCGAATCT
6649172 TATACCTTAA
Statistics
Matches: 369, Mismatches: 71, Indels: 2
0.83 0.16 0.00
Matches are distributed among these distances:
98 336 0.91
99 33 0.09
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (98 bp):
GTACCTCAGAAACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTGGTACCACGAAGATATG
GAGGGAAAGGTTTAAGTCGCAACGGCGAACCTT
Found at i:6649471 original size:40 final size:40
Alignment explanation
Indices: 6649415--6649490 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
6649405 AAGTTACATC
* *
6649415 ACCACCCAATCCCTTACCTCGATCATGGGGCAGATTAAAA
1 ACCACCAAATCCCTTACCCCGATCATGGGGCAGATTAAAA
* *
6649455 ACCACCAAATCTCTTACCCCGATCATGGGGCGGATT
1 ACCACCAAATCCCTTACCCCGATCATGGGGCAGATT
6649491 GAAACCATCG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (40 bp):
ACCACCAAATCCCTTACCCCGATCATGGGGCAGATTAAAA
Found at i:6649999 original size:16 final size:17
Alignment explanation
Indices: 6649975--6650016 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
6649965 AATCCAAAAA
*
6649975 TAAAATAAAAT-AATTT
1 TAAATTAAAATCAATTT
*
6649991 TAAATTAAAATCCATTT
1 TAAATTAAAATCAATTT
*
6650008 TAATTTAAA
1 TAAATTAAA
6650017 TGTCCATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAATTAAAATCAATTT
Found at i:6650138 original size:35 final size:35
Alignment explanation
Indices: 6650062--6650130 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
6650052 AACTCAAACC
*
6650062 AACCCAAATCCTAAAACTACCCAAAACCCATTACA
1 AACCCAAATCCTAAAACTACCCAAAACCCATAACA
*
6650097 AACCCAAA-CCTAAACCTAGCCCAAATACCC-TAAC
1 AACCCAAATCCTAAAACTA-CCCAAA-ACCCATAAC
6650131 TGACCCAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 9 0.30
35 17 0.57
36 4 0.13
ACGTcount: A:0.46, C:0.39, G:0.01, T:0.13
Consensus pattern (35 bp):
AACCCAAATCCTAAAACTACCCAAAACCCATAACA
Found at i:6651712 original size:29 final size:30
Alignment explanation
Indices: 6651679--6651751 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
6651669 CAAAAATATG
* *
6651679 ATTTTTGGATACTT-GAGGGTAAAACGGTA
1 ATTTTTGGACACTTCGAGGGTAAAACGATA
* *
6651708 A-TTTTCGACACTTCGAGGGTAAAATGATA
1 ATTTTTGGACACTTCGAGGGTAAAACGATA
6651737 ATTTTTGGACA-TTCG
1 ATTTTTGGACACTTCG
6651752 GGAGCCAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 10 0.27
29 19 0.51
30 8 0.22
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (30 bp):
ATTTTTGGACACTTCGAGGGTAAAACGATA
Found at i:6651785 original size:59 final size:58
Alignment explanation
Indices: 6651722--6651978 Score: 240
Period size: 59 Copynumber: 4.4 Consensus size: 58
6651712 TCGACACTTC
* * * *
6651722 GAGGG-TAAAATGATAATTTTTGGACATTCGGGAGCCAAAAATGTAATTTTTGGATA-TTA
1 GAGGGCTAAAATG-TAATTTTTGGAAATTTGGG-G-CAAAAATGTAATTTTTGGAAAGTTT
** *
6651781 GAGGG-TAAAAATGGGATTTTTGGAAAATTTAGGGTCAAAAATGTAATTTTT-GAAAGTTT
1 GAGGGCT-AAAATGTAATTTTTGG-AAATTT-GGGGCAAAAATGTAATTTTTGGAAAGTTT
* * *
6651840 GAGGGCAAAAATGTAATTTTT-GAAAGTTTGAGGGCAAAAATATGATTTTTGGAAAGTTT
1 GAGGGCTAAAATGTAATTTTTGGAAA-TTTG-GGGCAAAAATGTAATTTTTGGAAAGTTT
* **
6651899 GAGGGTTAAAATGTAATTTTTGGAAAGTTTAGGGGTTAAAATGTAATTTTT-GAAGAGTTT
1 GAGGGCTAAAATGTAATTTTTGGAAA-TTT-GGGGCAAAAATGTAATTTTTGGAA-AGTTT
*
6651959 GAGGG-TTAAATGTAATTTTT
1 GAGGGCTAAAATGTAATTTTT
6651979 AAAGAGTTTG
Statistics
Matches: 167, Mismatches: 20, Indels: 22
0.80 0.10 0.11
Matches are distributed among these distances:
57 4 0.02
58 23 0.14
59 93 0.56
60 43 0.26
61 4 0.02
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.37
Consensus pattern (58 bp):
GAGGGCTAAAATGTAATTTTTGGAAATTTGGGGCAAAAATGTAATTTTTGGAAAGTTT
Found at i:6651791 original size:29 final size:30
Alignment explanation
Indices: 6651758--6652008 Score: 266
Period size: 29 Copynumber: 8.5 Consensus size: 30
6651748 TTCGGGAGCC
* *
6651758 AAAAATGTAATTTTTGGATA-TTAGAGGGT
1 AAAAATGTAATTTTTGGAAAGTTTGAGGGT
** *
6651787 AAAAATGGGATTTTTGGAAAATTT-AGGGT
1 AAAAATGTAATTTTTGGAAAGTTTGAGGGT
*
6651816 CAAAAATGTAATTTTT-GAAAGTTTGAGGGC
1 -AAAAATGTAATTTTTGGAAAGTTTGAGGGT
*
6651846 AAAAATGTAATTTTT-GAAAGTTTGAGGGC
1 AAAAATGTAATTTTTGGAAAGTTTGAGGGT
* *
6651875 AAAAATATGATTTTTGGAAAGTTTGAGGGT
1 AAAAATGTAATTTTTGGAAAGTTTGAGGGT
*
6651905 TAAAATGTAATTTTTGGAAAGTTT-AGGGGT
1 AAAAATGTAATTTTTGGAAAGTTTGA-GGGT
*
6651935 TAAAATGTAATTTTT-GAAGAGTTTGAGGGT
1 AAAAATGTAATTTTTGGAA-AGTTTGAGGGT
* * *
6651965 -TAAATGTAATTTTT-AAAGAGTTTGAGAGT
1 AAAAATGTAATTTTTGGAA-AGTTTGAGGGT
* *
6651994 CAAAATGTAGTTTTT
1 AAAAATGTAATTTTT
6652009 AAGAAGTTCG
Statistics
Matches: 195, Mismatches: 19, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
29 101 0.52
30 93 0.48
31 1 0.01
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.38
Consensus pattern (30 bp):
AAAAATGTAATTTTTGGAAAGTTTGAGGGT
Found at i:6651999 original size:59 final size:56
Alignment explanation
Indices: 6651759--6652027 Score: 227
Period size: 59 Copynumber: 4.6 Consensus size: 56
6651749 TCGGGAGCCA
* * * ** *
6651759 AAAATGTAATTTTTGGATA-TTAGAGGGTAAAAATGGGATTTTTGGAAAATTT-AGGGTC
1 AAAATGTAATTTTT-GAAAGTTTGAGGG-ATAAATGTAATTTTT-GAAAGTTTGA-GGTC
* *
6651817 AAAAATGTAATTTTTGAAAGTTTGAGGGCAAAAATGTAATTTTTGAAAGTTTGAGGGC
1 -AAAATGTAATTTTTGAAAGTTTGAGGG-ATAAATGTAATTTTTGAAAGTTTGAGGTC
* * * * *
6651875 AAAAATATGATTTTTGGAAAGTTTGAGGGTTAAAATGTAATTTTTGGAAAGTTTAGGGGTT
1 -AAAATGTAATTTTT-GAAAGTTTGAGGGAT-AAATGTAATTTTT-GAAAGTTT-GAGGTC
* *
6651936 AAAATGTAATTTTTGAAGAGTTTGAGGGTTAAATGTAATTTTTAAAGAGTTTGAGAGTC
1 AAAATGTAATTTTTGAA-AGTTTGAGGGATAAATGTAATTTTTGAA-AGTTTGAG-GTC
* * *
6651995 AAAATGTAGTTTTTAAGAAGTTCGAGGGATAAA
1 AAAATGTAATTTTTGA-AAGTTTGAGGGATAAA
6652028 ATATGATTTT
Statistics
Matches: 177, Mismatches: 23, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
58 30 0.17
59 111 0.63
60 33 0.19
61 3 0.02
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.36
Consensus pattern (56 bp):
AAAATGTAATTTTTGAAAGTTTGAGGGATAAATGTAATTTTTGAAAGTTTGAGGTC
Found at i:6652012 original size:29 final size:29
Alignment explanation
Indices: 6651759--6652022 Score: 243
Period size: 30 Copynumber: 8.9 Consensus size: 29
6651749 TCGGGAGCCA
* * *
6651759 AAAATGTAATTTTTGGATA-TTAGAGGGTA
1 AAAATGTAATTTTT-GAAAGTTTGAGGGTC
** *
6651788 AAAATGGGATTTTTGGAAAATTT-AGGGTC
1 AAAATGTAATTTTT-GAAAGTTTGAGGGTC
6651817 AAAAATGTAATTTTTGAAAGTTTGAGGG-C
1 -AAAATGTAATTTTTGAAAGTTTGAGGGTC
6651846 AAAAATGTAATTTTTGAAAGTTTGAGGG-C
1 -AAAATGTAATTTTTGAAAGTTTGAGGGTC
* * *
6651875 AAAAATATGATTTTTGGAAAGTTTGAGGGTT
1 -AAAATGTAATTTTT-GAAAGTTTGAGGGTC
*
6651906 AAAATGTAATTTTTGGAAAGTTT-AGGGGTT
1 AAAATGTAATTTTT-GAAAGTTTGA-GGGTC
6651936 AAAATGTAATTTTTGAAGAGTTTGAGGGT-
1 AAAATGTAATTTTTGAA-AGTTTGAGGGTC
* * *
6651965 TAAATGTAATTTTTAAAGAGTTTGAGAGTC
1 AAAATGTAATTTTTGAA-AGTTTGAGGGTC
* * *
6651995 AAAATGTAGTTTTTAAGAAGTTCGAGGG
1 AAAATGTAATTTTTGA-AAGTTTGAGGG
6652023 ATAAAATATG
Statistics
Matches: 205, Mismatches: 20, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
29 101 0.49
30 102 0.50
31 2 0.01
ACGTcount: A:0.36, C:0.02, G:0.25, T:0.37
Consensus pattern (29 bp):
AAAATGTAATTTTTGAAAGTTTGAGGGTC
Found at i:6653867 original size:11 final size:10
Alignment explanation
Indices: 6653831--6653889 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
6653821 TGAACTTTTT
6653831 AATTTAAATA
1 AATTTAAATA
6653841 AATTTAAACCTA
1 AATTTAAA--TA
6653853 AATTTATAATA
1 AATTTA-AATA
6653864 AATTTAAAT-
1 AATTTAAATA
*
6653873 --TTCAAATA
1 AATTTAAATA
6653881 AATTTAAAT
1 AATTTAAAT
6653890 TTTATTGGGC
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 6 0.15
10 17 0.41
11 8 0.20
12 8 0.20
13 2 0.05
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (10 bp):
AATTTAAATA
Found at i:6653871 original size:17 final size:17
Alignment explanation
Indices: 6653851--6653891 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
6653841 AATTTAAACC
6653851 TAAATTT-ATAATAAATT
1 TAAATTTCA-AATAAATT
6653868 TAAATTTCAAATAAATT
1 TAAATTTCAAATAAATT
6653885 TAAATTT
1 TAAATTT
6653892 TATTGGGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 22 0.96
18 1 0.04
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
TAAATTTCAAATAAATT
Found at i:6655108 original size:99 final size:98
Alignment explanation
Indices: 6654965--6655174 Score: 282
Period size: 100 Copynumber: 2.2 Consensus size: 98
6654955 AAAGAATTTT
* * * *
6654965 AATCTTTTTCATTAACGATTTCTATCC--TTTTTTAAATCTAATTCTTTTA-CTTTTTATATCTT
1 AATCTTTTTTATTAACCATCTCTACCCGTTTTTTTAAATCTAATTCTTTTATCTTTTTATATCTT
6655027 TTAAAATAACCCCTTTATTTTTTAAAGATTTCA
66 TTAAAATAACCCCTTTATTTTTTAAAGATTTCA
* * *
6655060 AATCCTTTTTTGTTAACCATCTCTACCCGTTTTTTTAAAATCTAATTCTTTTATTTTTTTATTTC
1 AAT-CTTTTTTATTAACCATCTCTACCCGTTTTTTT-AAATCTAATTCTTTTATCTTTTTATATC
* ** *
6655125 TTTTAAAATAATCCCTTTATTTTTTTTAGATTTTA
64 TTTTAAAATAACCCCTTTATTTTTTAAAGATTTCA
6655160 AATCTTTTTTATTAA
1 AATCTTTTTTATTAA
6655175 TCGTTTTTAT
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
95 3 0.03
96 19 0.19
98 6 0.06
99 27 0.28
100 43 0.44
ACGTcount: A:0.27, C:0.15, G:0.02, T:0.56
Consensus pattern (98 bp):
AATCTTTTTTATTAACCATCTCTACCCGTTTTTTTAAATCTAATTCTTTTATCTTTTTATATCTT
TTAAAATAACCCCTTTATTTTTTAAAGATTTCA
Found at i:6655191 original size:99 final size:95
Alignment explanation
Indices: 6654955--6655243 Score: 271
Period size: 100 Copynumber: 2.9 Consensus size: 95
6654945 CCTTTTTAAA
* * *
6654955 AAAGAATTTT-AATCTTTTTCATTAACGATTTCTATC-CTTTTTTAAATCTAATTCTTTTACTTT
1 AAAG-ATTTTAAATCTTTTTTATTAACG-TTTCTATCGTTTTTTTAAATCTAATTCTTTTATTTT
6655018 TTATATCTTTTAAAATAACCCCTTTATTTTTT
64 TTATATCTTTTAAAATAACCCCTTTATTTTTT
* * * * *
6655050 AAAGATTTCAAATCCTTTTTTGTTAACCATCTCTACCCGTTTTTTTAAAATCTAATTCTTTTATT
1 AAAGATTTTAAAT-CTTTTTTATTAA-CGTTTCTA-TCGTTTTTTT-AAATCTAATTCTTTTA-T
* *
6655115 TTTTTATTTCTTTTAAAATAATCCCTTTATTTTTT
61 TTTTTATATCTTTTAAAATAACCCCTTTATTTTTT
** * *
6655150 TTAGATTTTAAATCTTTTTTATTAATCGTTTTTATCTGTTTTTTTTTTTTAAATTTAATTCTTTT
1 AAAGATTTTAAATCTTTTTTATTAA-CGTTTCTATC-G-----TTTTTTTAAATCTAATTCTTTT
* *
6655215 ACTTTTTTATCTCTTTCAAAAT--CCCCTTT
59 A-TTTTTTATATCTTTTAAAATAACCCCTTT
6655244 TAATTTTGTG
Statistics
Matches: 157, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
94 4 0.03
95 7 0.04
96 15 0.10
97 2 0.01
98 7 0.04
99 33 0.21
100 43 0.27
101 6 0.04
103 33 0.21
104 7 0.04
ACGTcount: A:0.25, C:0.15, G:0.03, T:0.57
Consensus pattern (95 bp):
AAAGATTTTAAATCTTTTTTATTAACGTTTCTATCGTTTTTTTAAATCTAATTCTTTTATTTTTT
ATATCTTTTAAAATAACCCCTTTATTTTTT
Found at i:6655238 original size:100 final size:96
Alignment explanation
Indices: 6654992--6655239 Score: 239
Period size: 99 Copynumber: 2.5 Consensus size: 96
6654982 ATTTCTATCC
6654992 TTTTTTAAATCTAATTCTTTTACTTTTTATATCT-TTTAAAATAACCCCTTTATTTTTTAAAGAT
1 TTTTTTAAATCTAATTCTTTTACTTTTT-TATCTCTTTAAAAT---CCCTTTATTTTTTAAAGAT
*
6655056 TTCAAATCCTTTTTTGTTAACCATCTCTACCCGTT
62 TTCAAATCCTTTTTTATTAACCATCTCTACCCGTT
* * * **
6655091 TTTTTAAAATCTAATTCTTTTATTTTTTTATTTCTTTTAAAATAATCCCTTTATTTTTTTTAGAT
1 TTTTTTAAATCTAATTCTTTTACTTTTTTATCTC-TTT--AA-AATCCCTTTATTTTTTAAAGAT
* * * * * * *
6655156 TTTAAAT-CTTTTTTATTAATCGTTTTTATCTGTTTTTT
62 TTCAAATCCTTTTTTATTAACCATCTCTACCCG----TT
*
6655194 TTTTTTAAATTTAATTCTTTTACTTTTTTATCTCTTTCAAAATCCC
1 TTTTTTAAATCTAATTCTTTTACTTTTTTATCTCTTT-AAAATCCC
6655240 CTTTTAATTT
Statistics
Matches: 122, Mismatches: 18, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
98 4 0.03
99 44 0.36
100 32 0.26
101 2 0.02
102 5 0.04
103 35 0.29
ACGTcount: A:0.25, C:0.14, G:0.02, T:0.59
Consensus pattern (96 bp):
TTTTTTAAATCTAATTCTTTTACTTTTTTATCTCTTTAAAATCCCTTTATTTTTTAAAGATTTCA
AATCCTTTTTTATTAACCATCTCTACCCGTT
Found at i:6655344 original size:18 final size:20
Alignment explanation
Indices: 6655320--6655373 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 20
6655310 TTTTACTACA
6655320 ATTTTATTTTATTTCAA-AC
1 ATTTTATTTTATTTCAATAC
6655339 -TTTTA-TTTATTTTCAATAC
1 ATTTTATTTTA-TTTCAATAC
6655358 ATTTTTATTTTTATTT
1 A-TTTTA-TTTTATTT
6655374 TTTTAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
17 4 0.14
18 11 0.38
19 2 0.07
21 5 0.17
22 3 0.10
23 4 0.14
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTTTATTTTATTTCAATAC
Found at i:6657317 original size:46 final size:46
Alignment explanation
Indices: 6657250--6657341 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
6657240 TAGTTTTTCT
*
6657250 GGTGAAGGATGCAACTGTTCTTAAATGCTAGCAAGAAGAGTAAGGA
1 GGTGAAGGATACAACTGTTCTTAAATGCTAGCAAGAAGAGTAAGGA
*
6657296 GGTGAAGGATACATCTGTTCTTAAATGCTAGCAAGAAGAGTAAGGA
1 GGTGAAGGATACAACTGTTCTTAAATGCTAGCAAGAAGAGTAAGGA
6657342 TACATCTGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.37, C:0.11, G:0.29, T:0.23
Consensus pattern (46 bp):
GGTGAAGGATACAACTGTTCTTAAATGCTAGCAAGAAGAGTAAGGA
Found at i:6659533 original size:30 final size:30
Alignment explanation
Indices: 6659497--6659628 Score: 137
Period size: 30 Copynumber: 4.5 Consensus size: 30
6659487 TATTTTGTTT
*
6659497 AAAAATTACATTTTAACCCTCAAACTTTCA
1 AAAAATTACATTTTAACCCTCAAACTTTCC
*
6659527 AAAAATTATATTTTAA-CCTCAAAC-TTCC
1 AAAAATTACATTTTAACCCTCAAACTTTCC
*
6659555 AAAAATTACATTTTAATCCCT-GAACTTTCC
1 AAAAATTACATTTTAA-CCCTCAAACTTTCC
** * * * *
6659585 AAAAATTGTAGTTTCACCCCCAAACTTTTTC
1 AAAAATTACATTTTAACCCTCAAAC-TTTCC
6659616 -AAAATTACATTTT
1 AAAAATTACATTTT
6659629 GACACTTGAA
Statistics
Matches: 83, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
28 18 0.22
29 14 0.17
30 47 0.57
31 4 0.05
ACGTcount: A:0.39, C:0.22, G:0.02, T:0.36
Consensus pattern (30 bp):
AAAAATTACATTTTAACCCTCAAACTTTCC
Found at i:6659745 original size:29 final size:29
Alignment explanation
Indices: 6659674--6659753 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 29
6659664 CAAACTTCTC
* *
6659674 CAAAAATTATGATCTTACCCCCGAACATT
1 CAAAAATTATCATTTTACCCCCGAACATT
** * *
6659703 CAAAAATTGCCATTTTACCCCTGAATA-T
1 CAAAAATTATCATTTTACCCCCGAACATT
*
6659731 CTAAAAATTATCATTTTGCCCCC
1 C-AAAAATTATCATTTTACCCCC
6659754 AAATTTCCTA
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
28 2 0.05
29 38 0.95
ACGTcount: A:0.35, C:0.28, G:0.06, T:0.31
Consensus pattern (29 bp):
CAAAAATTATCATTTTACCCCCGAACATT
Found at i:6659833 original size:29 final size:28
Alignment explanation
Indices: 6659753--6659846 Score: 77
Period size: 29 Copynumber: 3.2 Consensus size: 28
6659743 ATTTTGCCCC
6659753 CAAATTTCCTAAAA-TCAGATTTTCAA-CCT
1 CAAATTTCC-AAAATTCA-ATTTT-AATCCT
* *
6659782 CAAATTTTCCAAGAGTTCGATTTTAATCC-
1 CAAA-TTTCCAA-AATTCAATTTTAATCCT
*
6659811 CAAATTTCCAAAAATTTCAATTTTGATCCT
1 CAAATTTCC-AAAA-TTCAATTTTAATCCT
6659841 CAAATT
1 CAAATT
6659847 CCTCGAAAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
28 6 0.11
29 26 0.49
30 19 0.36
31 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.37
Consensus pattern (28 bp):
CAAATTTCCAAAATTCAATTTTAATCCT
Found at i:6670660 original size:39 final size:39
Alignment explanation
Indices: 6670616--6671148 Score: 226
Period size: 39 Copynumber: 13.7 Consensus size: 39
6670606 AAAGATTCCG
* *
6670616 ATCTCTTACCCCGAGCTTGAGGCAGATCATCATCAGCCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATCATCATCAGCCA
* * * *
6670655 ATCTCTTACCTCGAGCTTGGGGCAGAT--TGCAGCCGTCCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATCAT-CATCAG-CCA
** * * ** * * * *
6670694 ATCTTTTACCCTAAGCCTAGAACAAATCACCATTAACCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATCATCATCAGCCA
* * * * ** * ***
6670733 ATCTCTTACCCTGAGCCTAGGGCAGATTGT-AGTTATTTA
1 ATCTTTTACCCCGAGCTTGGGGCAGATCATCA-TCAGCCA
* * * *
6670772 ATCTTTTGCCCCGAGCTTGGGGCAAATAACCATCAGCCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATCATCATCAGCCA
* ** *
6670811 ATCTTTTACCCCGAGCTTGGGGCAGAT--TGCAACCATTCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATCAT-C-ATCAGCCA
* * * *
6670850 ATCTTTTATCCCGAGCTTGGGGCAAATCACCATCAGTCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATCATCATCAGCCA
** * * * ** * ** *
6670889 ATCTCCTACACCGAGCTTGGGGTAAATTGT-AGCTATTCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATCATCATC-AGCCA
* * * *
6670928 ATCTTTTACCCCGAG-TCTAGGGCAGATTACCATCAACCA
1 ATCTTTTACCCCGAGCT-TGGGGCAGATCATCATCAGCCA
* *
6670967 ATCTTTTACCCCGAGCTTGGGGCAGAT--TGCAGCCATTCC-
1 ATCTTTTACCCCGAGCTTGGGGCAGATCAT-CA-TCA-GCCA
* * * * * *
6671006 ATCTTTTACCCTGAGCCTGAGACAGATCACCATTAGCCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATCATCATCAGCCA
* ** * * *
6671045 ATCTCTTACCCCGAGCTTGGGGCAGATTGT-AGCCATCCG
1 ATCTTTTACCCCGAGCTTGGGGCAGATCATCA-TCAGCCA
* * *
6671084 ATCTCTTACCCCGAGC-TAGGGCAGATCACCATCAGCCA
1 ATCTTTTACCCCGAGCTTGGGGCAGATCATCATCAGCCA
* * *
6671122 ATCTTTTACCCTGAGCCTAGGGCAGAT
1 ATCTTTTACCCCGAGCTTGGGGCAGAT
6671149 TGCCTCGAGC
Statistics
Matches: 360, Mismatches: 111, Indels: 46
0.70 0.21 0.09
Matches are distributed among these distances:
37 1 0.00
38 41 0.11
39 307 0.85
40 11 0.03
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (39 bp):
ATCTTTTACCCCGAGCTTGGGGCAGATCATCATCAGCCA
Found at i:6670704 original size:78 final size:77
Alignment explanation
Indices: 6670612--6671151 Score: 512
Period size: 78 Copynumber: 6.9 Consensus size: 77
6670602 GGTTAAAGAT
* *
6670612 TCCGATCTCTTACCCCGAGCTTGAGGCAGATCATCATCAGCCAATCTCTTACCTCGAGCTTGGGG
1 TCCGATCTTTTACCCCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTACC-CGAGCTTGGGG
*
6670677 CAGATTGCAGCCG
65 CAGATTGCAGCCA
* ** * * * * * * *
6670690 TCCAATCTTTTACCCTAAGCCT-AGAACAAATCACCATTAACCAATCTCTTACCCTGAGCCTAGG
1 TCCGATCTTTTACCCCGAGCTTGAG-GCAGATCACCATCAGCCAATCTCTTACCC-GAGCTTGGG
* **
6670754 GCAGATTGTAGTTA
64 GCAGATTGCAGCCA
*** * * * * *
6670768 TTTAATCTTTTGCCCCGAGCTTGGGGCAAATAACCATCAGCCAATCTTTTACCCCGAGCTTGGGG
1 TCCGATCTTTTACCCCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTA-CCCGAGCTTGGGG
*
6670833 CAGATTGCAACCA
65 CAGATTGCAGCCA
* * * * * *
6670846 TTCGATCTTTTATCCCGAGCTTGGGGCAAATCACCATCAGTCAATCTCCTACACCGAGCTTGGGG
1 TCCGATCTTTTACCCCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTAC-CCGAGCTTGGGG
* * * *
6670911 TAAATTGTAGCTA
65 CAGATTGCAGCCA
* * * * *
6670924 TTCGATCTTTTACCCCGAGTCTAG-GGCAGATTACCATCAACCAATCTTTTACCCCGAGCTTGGG
1 TCCGATCTTTTACCCCGAG-CTTGAGGCAGATCACCATCAGCCAATCTCTTA-CCCGAGCTTGGG
6670988 GCAGATTGCAGCCA
64 GCAGATTGCAGCCA
* * * *
6671002 TTCC-ATCTTTTACCCTGAGCCTGAGACAGATCACCATTAGCCAATCTCTTACCCCGAGCTTGGG
1 -TCCGATCTTTTACCCCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTA-CCCGAGCTTGGG
*
6671066 GCAGATTGTAGCCA
64 GCAGATTGCAGCCA
* * * * *
6671080 TCCGATCTCTTACCCCGAGCTAG-GGCAGATCACCATCAGCCAATCTTTTACCCTGAGCCTAGGG
1 TCCGATCTTTTACCCCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTACCC-GAGCTTGGGG
6671144 CAGATTGC
65 CAGATTGC
6671152 CTCGAGCTTG
Statistics
Matches: 372, Mismatches: 79, Indels: 23
0.78 0.17 0.05
Matches are distributed among these distances:
76 3 0.01
77 48 0.13
78 311 0.84
79 10 0.03
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (77 bp):
TCCGATCTTTTACCCCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTACCCGAGCTTGGGGC
AGATTGCAGCCA
Found at i:6670918 original size:156 final size:155
Alignment explanation
Indices: 6670614--6671353 Score: 651
Period size: 156 Copynumber: 4.9 Consensus size: 155
6670604 TTAAAGATTC
* * * *
6670614 CGATCTCTTACCCCGAGCTT-GAGGCAGATCATCATCAGCCAATCTCTTACCTCGAGCTTGGGGC
1 CGATCTTTTACCCCGAGCTTAG-GGCAGATCACCATCAGCCAATCTTTTACCCCGAGCTTGGGGC
* * * * * *
6670678 AGATTGCAGCCGTCCAATCTTTTACCCTAAGCCTAGAACAAATCACCATTAACCAATCTCTTACC
65 AGATTGCAGCCATTCAATCTTTTACCCTGAGCCTGGGACAAATCACCATTAGCCAATCTCTTACC
* * *
6670743 CTGAGCCTAGGGCAGATTGTAGTTATT
130 C-GAGCTTGGGGCAGATTGTAGCTATT
** * * * *
6670770 TAATCTTTTGCCCCGAGCTTGGGGCAAATAACCATCAGCCAATCTTTTACCCCGAGCTTGGGGCA
1 CGATCTTTTACCCCGAGCTTAGGGCAGATCACCATCAGCCAATCTTTTACCCCGAGCTTGGGGCA
* * * * * * *
6670835 GATTGCAACCATTCGATCTTTTATCCC-GAGCTTGGGGCAAATCACCATCAGTCAATCTCCTACA
66 GATTGCAGCCATTCAATCTTTTA-CCCTGAGCCTGGGACAAATCACCATTAGCCAATCTCTTAC-
* *
6670899 CCGAGCTTGGGGTAAATTGTAGCTATT
129 CCGAGCTTGGGGCAGATTGTAGCTATT
* *
6670926 CGATCTTTTACCCCGAG-TCTAGGGCAGATTACCATCAACCAATCTTTTACCCCGAGCTTGGGGC
1 CGATCTTTTACCCCGAGCT-TAGGGCAGATCACCATCAGCCAATCTTTTACCCCGAGCTTGGGGC
* * *
6670990 AGATTGCAGCCATTCCATCTTTTACCCTGAGCCTGAGACAGATCACCATTAGCCAATCTCTTACC
65 AGATTGCAGCCATTCAATCTTTTACCCTGAGCCTGGGACAAATCACCATTAGCCAATCTCTTA-C
* *
6671055 CCGAGCTTGGGGCAGATTGTAGCCATC
129 CCGAGCTTGGGGCAGATTGTAGCTATT
* * * *
6671082 CGATCTCTTACCCCGAGC-TAGGGCAGATCACCATCAGCCAATCTTTTACCCTGAGCCTAGGGCA
1 CGATCTTTTACCCCGAGCTTAGGGCAGATCACCATCAGCCAATCTTTTACCCCGAGCTTGGGGCA
* * * * *
6671146 GATT---G-----C---C---T---C-GAGCTTGGGCCAGATCACCATCAACCAATCTCTTACCC
66 GATTGCAGCCATTCAATCTTTTACCCTGAGCCTGGGACAAATCACCATTAGCCAATCTCTTA-CC
* * * * *
6671193 CGAGCCTAGGGCAGATTGCATCCATT
130 CGAGCTTGGGGCAGATTGTAGCTATT
** * * * * * * *
6671219 CGATCTTTTACCCTAAGCCTGGGGCAAATCACCATCAACCAATCTCTTACCCCGAGCCTGAGGCA
1 CGATCTTTTACCCCGAGCTTAGGGCAGATCACCATCAGCCAATCTTTTACCCCGAGCTTGGGGCA
* ** * * * * * *
6671284 GTTTGCAGCCATTTGATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCTAATCTCTTACCC
66 GATTGCAGCCATTCAATCTTTTACCCTGAGCCTGGGACAAATCACCATTAGCCAATCTCTTACCC
6671349 TGAGC
131 -GAGC
6671354 CTGAGGTAGA
Statistics
Matches: 478, Mismatches: 79, Indels: 54
0.78 0.13 0.09
Matches are distributed among these distances:
137 69 0.14
138 43 0.09
141 2 0.00
144 1 0.00
147 1 0.00
149 1 0.00
152 2 0.00
155 53 0.11
156 299 0.63
157 7 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (155 bp):
CGATCTTTTACCCCGAGCTTAGGGCAGATCACCATCAGCCAATCTTTTACCCCGAGCTTGGGGCA
GATTGCAGCCATTCAATCTTTTACCCTGAGCCTGGGACAAATCACCATTAGCCAATCTCTTACCC
GAGCTTGGGGCAGATTGTAGCTATT
Found at i:6671191 original size:60 final size:59
Alignment explanation
Indices: 6671095--6671211 Score: 189
Period size: 60 Copynumber: 2.0 Consensus size: 59
6671085 TCTCTTACCC
* * *
6671095 CGAGCTAGGGCAGATCACCATCAGCCAATCTTTTACCCTGAGCCTAGGGCAGATTGCCT
1 CGAGCTAGGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGCAGATTGCCT
*
6671154 CGAGCTTGGGCCAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGCAGATTGC
1 CGAGCTAGGG-CAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGCAGATTGC
6671212 ATCCATTCGA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
59 9 0.17
60 44 0.83
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.21
Consensus pattern (59 bp):
CGAGCTAGGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGCAGATTGCCT
Found at i:6671208 original size:39 final size:39
Alignment explanation
Indices: 6671154--6671356 Score: 162
Period size: 39 Copynumber: 5.2 Consensus size: 39
6671144 CAGATTGCCT
* *
6671154 CGAGCTTGGGCCAGATCACCATCAACCAATCTCTTACCC
1 CGAGCCTGGGGCAGATCACCATCAACCAATCTCTTACCC
* ** ** * *
6671193 CGAGCCTAGGGCAGAT-TGCATCCATTCGATCTTTTACCC
1 CGAGCCTGGGGCAGATCACCAT-CAACCAATCTCTTACCC
** *
6671232 TAAGCCTGGGGCAAATCACCATCAACCAATCTCTTACCC
1 CGAGCCTGGGGCAGATCACCATCAACCAATCTCTTACCC
* * ***
6671271 CGAGCCTGAGGCAGTTTGCAGCCAT---TTGATCTCTTACCC
1 CGAGCCTGGGGCAG-AT-CA-CCATCAACCAATCTCTTACCC
* *
6671310 CGAGCCTGGGGCAGATCACCATCAGCTAATCTCTTACCC
1 CGAGCCTGGGGCAGATCACCATCAACCAATCTCTTACCC
*
6671349 TGAGCCTG
1 CGAGCCTG
6671357 AGGTAGATTG
Statistics
Matches: 124, Mismatches: 32, Indels: 16
0.72 0.19 0.09
Matches are distributed among these distances:
36 4 0.03
37 2 0.02
38 4 0.03
39 104 0.84
40 4 0.03
41 2 0.02
42 4 0.03
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.24
Consensus pattern (39 bp):
CGAGCCTGGGGCAGATCACCATCAACCAATCTCTTACCC
Found at i:6671384 original size:39 final size:39
Alignment explanation
Indices: 6671179--6671386 Score: 154
Period size: 39 Copynumber: 5.3 Consensus size: 39
6671169 TCACCATCAA
*
6671179 CCAATCTCTTACCCCGAGCCT-AGGGCAGATTGCATCCAT
1 CCAATCTCTTACCCCGAGCCTGA-GGCAGATTGCAACCAT
* * * ** * * ** * * *
6671218 TCGATCTTTTACCCTAAGCCTGGGGCAAATCACCATCAA
1 CCAATCTCTTACCCCGAGCCTGAGGCAGATTGCAACCAT
* *
6671257 CCAATCTCTTACCCCGAGCCTGAGGCAGTTTGCAGCCAT
1 CCAATCTCTTACCCCGAGCCTGAGGCAGATTGCAACCAT
*** *
6671296 TTGATCTCTTACCCCGAGCCTGGGGCAGA-T-C-ACCAT
1 CCAATCTCTTACCCCGAGCCTGAGGCAGATTGCAACCAT
* *
6671332 CAGCTAATCTCTTACCCTGAGCCTGAGGTAGATTGCAACCAT
1 C--C-AATCTCTTACCCCGAGCCTGAGGCAGATTGCAACCAT
*
6671374 CCAATATCTTACC
1 CCAATCTCTTACC
6671387 TAAAAAAAAT
Statistics
Matches: 122, Mismatches: 40, Indels: 14
0.69 0.23 0.08
Matches are distributed among these distances:
36 4 0.03
37 1 0.01
38 1 0.01
39 107 0.88
40 2 0.02
41 1 0.01
42 6 0.05
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (39 bp):
CCAATCTCTTACCCCGAGCCTGAGGCAGATTGCAACCAT
Found at i:6671386 original size:78 final size:78
Alignment explanation
Indices: 6671154--6671373 Score: 298
Period size: 78 Copynumber: 2.8 Consensus size: 78
6671144 CAGATTGCCT
* * *
6671154 CGAGCTTGGGCCAGATCACCATCAACCAATCTCTTACCCCGAGCCT-AGGGCAGATTGCATCCAT
1 CGAGCCTGGGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTGA-GGCAGATTGCAACCAT
*
6671218 TCGATCTTTTACCC
65 TCGATCTCTTACCC
** * * *
6671232 TAAGCCTGGGGCAAATCACCATCAACCAATCTCTTACCCCGAGCCTGAGGCAGTTTGCAGCCATT
1 CGAGCCTGGGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTGAGGCAGATTGCAACCATT
*
6671297 TGATCTCTTACCC
66 CGATCTCTTACCC
* * * *
6671310 CGAGCCTGGGGCAGATCACCATCAGCTAATCTCTTACCCTGAGCCTGAGGTAGATTGCAACCAT
1 CGAGCCTGGGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTGAGGCAGATTGCAACCAT
6671374 CCAATATCTT
Statistics
Matches: 123, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
78 122 0.99
79 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.24
Consensus pattern (78 bp):
CGAGCCTGGGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTGAGGCAGATTGCAACCATT
CGATCTCTTACCC
Found at i:6674519 original size:70 final size:71
Alignment explanation
Indices: 6674401--6674545 Score: 229
Period size: 70 Copynumber: 2.1 Consensus size: 71
6674391 ATCTTACATA
* * * * *
6674401 AATACTTGTCAAACACTTGAACCAATTTAAGTAACGTTATTAGTCCAAGATGAATGTGGCAACTA
1 AATACTTGTCAAACACATGAACCAATTTAACTAACGTCATTAATCCAAGATGAAAGTGGCAACTA
6674466 ATGTTG
66 ATGTTG
*
6674472 AATA-TTGTCAAACACATGAACCAATTTGACTAACGTCATTAATCCAAGATGAAAGTGGCAACTA
1 AATACTTGTCAAACACATGAACCAATTTAACTAACGTCATTAATCCAAGATGAAAGTGGCAACTA
6674536 ATGTTG
66 ATGTTG
6674542 AATA
1 AATA
6674546 AGAAGCCCAA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
70 64 0.94
71 4 0.06
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (71 bp):
AATACTTGTCAAACACATGAACCAATTTAACTAACGTCATTAATCCAAGATGAAAGTGGCAACTA
ATGTTG
Found at i:6674753 original size:46 final size:47
Alignment explanation
Indices: 6674701--6674790 Score: 155
Period size: 47 Copynumber: 1.9 Consensus size: 47
6674691 TTTATGTTTA
* *
6674701 AAAGATGTG-TTTTTGGGTAAATTTTAAAAGATGGTTTTTATTTATT
1 AAAGATGTGTTTTTTGGGTAAATTTTAAAAGAAGATTTTTATTTATT
6674747 AAAGATGTGTTTTTTGGGTAAATTTTAAAAGAAGATTTTTATTT
1 AAAGATGTGTTTTTTGGGTAAATTTTAAAAGAAGATTTTTATTT
6674791 TTCTTTTCTA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
46 9 0.22
47 32 0.78
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (47 bp):
AAAGATGTGTTTTTTGGGTAAATTTTAAAAGAAGATTTTTATTTATT
Found at i:6675930 original size:51 final size:51
Alignment explanation
Indices: 6675854--6675960 Score: 155
Period size: 51 Copynumber: 2.1 Consensus size: 51
6675844 ACTTGTAAAC
*
6675854 TGGAGGTGGTGGGGGTGGAGACTTGTACTAGTAAGGG-TGCTTGGGTGG-GG
1 TGGAGGTGGTGGGGGAGGAGACTTGTACTAGT-AGGGATGCTTGGGTGGTGG
* *
6675904 ATGGAGGTGGTGGTGGAGGAGACTTGTACTCGTAGGGATGCTTGGGTGGTGG
1 -TGGAGGTGGTGGGGGAGGAGACTTGTACTAGTAGGGATGCTTGGGTGGTGG
6675956 TGGAG
1 TGGAG
6675961 AATTGTAATG
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
50 4 0.08
51 45 0.88
52 2 0.04
ACGTcount: A:0.15, C:0.07, G:0.52, T:0.26
Consensus pattern (51 bp):
TGGAGGTGGTGGGGGAGGAGACTTGTACTAGTAGGGATGCTTGGGTGGTGG
Found at i:6682628 original size:16 final size:18
Alignment explanation
Indices: 6682594--6682635 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
6682584 AGGGTAAAAA
*
6682594 TCATATTTCACTTCAATTC
1 TCAT-TTTCACATCAATTC
6682613 T-ATTTTCACATC-ATTC
1 TCATTTTCACATCAATTC
6682629 TCATTTT
1 TCATTTT
6682636 TGTCCCATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 5 0.24
17 13 0.62
18 2 0.10
19 1 0.05
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (18 bp):
TCATTTTCACATCAATTC
Found at i:6683700 original size:18 final size:18
Alignment explanation
Indices: 6683666--6683700 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6683656 TATAATAAAT
* *
6683666 TATTATTATTTATTATAA
1 TATTATTAATTAATATAA
6683684 TATTATTAATTAATATA
1 TATTATTAATTAATATA
6683701 TCTTTTAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTATTAATTAATATAA
Found at i:6684804 original size:3 final size:3
Alignment explanation
Indices: 6684796--6684825 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
6684786 TTATGATATT
6684796 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
6684826 AGGGATAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:6687226 original size:39 final size:38
Alignment explanation
Indices: 6687137--6687904 Score: 191
Period size: 39 Copynumber: 19.8 Consensus size: 38
6687127 TACAGCCGCC
* * * * * **
6687137 CGATCTTTTACCCTGAGCGTGGGACAAATCACCATCAAC
1 CGATCTTTTACCCTGAGCCTGGGGCAGATTA-CACCATT
* * *
6687176 CAATCTCTTACCCTGAGCTTGGGGCAGATTACAGCCATT
1 CGATCTTTTACCCTGAGCCTGGGGCAGATTACA-CCATT
***
6687215 CGATCTTTTA-CCTCGAGCCTGGGGCAGATTGTGGCCATT
1 CGATCTTTTACCCT-GAGCCTGGGGCAGATT-ACACCATT
* * * * * *
6687254 TGATCTTTTACCCTGAGCTTGGGGTAGATCACTATCAGT
1 CGATCTTTTACCCTGAGCCTGGGGCAGATTAC-ACCATT
* * * * * *
6687293 CAATCTCTTACCCCGAGCCTAGGACAGATTGCAACCATT
1 CGATCTTTTACCCTGAGCCTGGGGCAGATTAC-ACCATT
** * * * **
6687332 CGATCTTTTACCCCAAGCCTAGGGCAGATCACCATCAAC
1 CGATCTTTTACCCTGAGCCTGGGGCAGATTA-CACCATT
* * * * *
6687371 CAATCTCTTACCCCGAGCTTGGGGCAGATTACAACAATT
1 CGATCTTTTACCCTGAGCCTGGGGCAGATTAC-ACCATT
* * * **
6687410 CGATCTTTTA-CCTCGAGCCTGGGACAGATCATCATCAGC
1 CGATCTTTTACCCT-GAGCCTGGGGCAGATTA-CACCATT
* * ** * *
6687449 CAATCTCTTACCCCAAGCCTGGGGCAGATTGCAGCCATC
1 CGATCTTTTACCCTGAGCCTGGGGCAGATTACA-CCATT
** ** * * * **
6687488 CGATCCGTTATCCC-GAGCC-AAGGTAGATCACCATCAGC
1 CGATCTTTTA-CCCTGAGCCTGGGGCAGATTA-CACCATT
* * * * *
6687526 CAATCTTTTA-CCTCGAGCTTGGGGTAGATTGCAACCA-C
1 CGATCTTTTACCCT-GAGCCTGGGGCAGATTAC-ACCATT
* * * **
6687564 CTGATCTCTTA-CCTCGAG-CTAGGGGCAGATCATCATCAGC
1 C-GATCTTTTACCCT-GAGCCT-GGGGCAGATTA-CACCATT
* * * *
6687604 CAATCTTTTACCCTGAGCTTGGGGCAGATTGCAGCCATC
1 CGATCTTTTACCCTGAGCCTGGGGCAGATTACA-CCATT
* * ** * * **
6687643 CGATCCCTTAACCC-GAGCC-AAGGCAGATCACCATCAAC
1 CGAT-CTTTTACCCTGAGCCTGGGGCAGATTA-CACCATT
* *
6687681 CAATCTTTTACCCCGAGCCTGGGGCAGATTGTA-ACCA-T
1 CGATCTTTTACCCTGAGCCTGGGGCAGA-T-TACACCATT
* * * **
6687719 CTGATCTTTTACCCCGAG-CTAGGGGCAGATCATCATCAGC
1 C-GATCTTTTACCCTGAGCCT-GGGGCAGATTA-CACCATT
* * * *
6687759 CAATCTCTTACCCCGAGCCTGGGGCAGATTGCAACCATT
1 CGATCTTTTACCCTGAGCCTGGGGCAGATTAC-ACCATT
* * *
6687798 CAATCTTTTACTCC-AAGCTTGGGGCAGA-T-CACCATT
1 CGATCTTTTAC-CCTGAGCCTGGGGCAGATTACACCATT
* * * * * * *
6687834 AGCCAATCTCTTACCCCGAGCCTGAGGTAGATTGCAGTCATT
1 ---CGATCTTTTACCCTGAGCCTGGGGCAGATTACA-CCATT
* * **
6687876 CGATCTCTTACCCCGAGCCTAAGGCAGAT
1 CGATCTTTTACCCTGAGCCTGGGGCAGAT
6687905 CACCATCAGC
Statistics
Matches: 534, Mismatches: 150, Indels: 90
0.69 0.19 0.12
Matches are distributed among these distances:
36 8 0.01
37 9 0.02
38 62 0.12
39 417 0.78
40 31 0.06
41 3 0.01
42 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (38 bp):
CGATCTTTTACCCTGAGCCTGGGGCAGATTACACCATT
Found at i:6687267 original size:117 final size:117
Alignment explanation
Indices: 6687138--6687360 Score: 302
Period size: 117 Copynumber: 1.9 Consensus size: 117
6687128 ACAGCCGCCC
* * * *
6687138 GATCTTTTACCCTGAGCGTGGGACAAATCACCATCAACCAATCTCTTACCCTGAGCTTGGGGCAG
1 GATCTTTTACCCTGAGCGTGGGACAAATCACCATCAACCAATCTCTTACCCCGAGCCTAGGACAG
* * * *
6687203 ATTACAGCCATTCGATCTTTTACCTCGAGCCTGGGGCAGATTGTGGCCATTT
66 ATTACAACCATTCGATCTTTTACCCCAAGCCTAGGGCAGATTGTGGCCATTT
* ** * * **
6687255 GATCTTTTACCCTGAGCTTGGGGTAGATCACTATCAGTCAATCTCTTACCCCGAGCCTAGGACAG
1 GATCTTTTACCCTGAGCGTGGGACAAATCACCATCAACCAATCTCTTACCCCGAGCCTAGGACAG
*
6687320 ATTGCAACCATTCGATCTTTTACCCCAAGCCTAGGGCAGAT
66 ATTACAACCATTCGATCTTTTACCCCAAGCCTAGGGCAGAT
6687361 CACCATCAAC
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
117 90 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (117 bp):
GATCTTTTACCCTGAGCGTGGGACAAATCACCATCAACCAATCTCTTACCCCGAGCCTAGGACAG
ATTACAACCATTCGATCTTTTACCCCAAGCCTAGGGCAGATTGTGGCCATTT
Found at i:6687577 original size:155 final size:155
Alignment explanation
Indices: 6687217--6687954 Score: 815
Period size: 155 Copynumber: 4.8 Consensus size: 155
6687207 CAGCCATTCG
* *** * * *
6687217 ATCTTTTACCTCGAGCCTGGGGCAGATTGTGGCCATTTGATCTTTTACCCTGAG-CTTGGGGTAG
1 ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACCATTTGATCTTTTACCCCGAGCCTAGGGGCAG
* * * * *
6687281 ATCA-CTATCAGTCAATCTCTTACCCCGAGCCTAGGACAGATTGCAACCATTCGATCTTTTACCC
66 ATCATC-ATCAGCCAATCTCTTACCCCGAGCCTGGGGCAGATTGCAACCATCCGATCCTTTA-CC
*
6687345 CAAGCCTAGGGCAGATCACCATCAACCA
129 CAAGCC-AAGGCAGATCACCATCAACCA
* * * * * * *
6687373 ATCTCTTACCCCGAGCTTGGGGCAGATTACAACAATTCGATCTTTTACCTCGAGCCT-GGGACAG
1 ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACCATTTGATCTTTTACCCCGAGCCTAGGGGCAG
* * *
6687437 ATCATCATCAGCCAATCTCTTACCCCAAGCCTGGGGCAGATTGCAGCCATCCGATCCGTTATCCC
66 ATCATCATCAGCCAATCTCTTACCCCGAGCCTGGGGCAGATTGCAACCATCCGATCCTTTA-CCC
* * *
6687502 GAGCCAAGGTAGATCACCATCAGCCA
130 AAGCCAAGGCAGATCACCATCAACCA
* * * ** * *
6687528 ATCTTTTACCTCGAGCTTGGGGTAGATTGCAACCACCTGATCTCTTACCTCGAG-CTAGGGGCAG
1 ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACCATTTGATCTTTTACCCCGAGCCTAGGGGCAG
* * * * *
6687592 ATCATCATCAGCCAATCTTTTACCCTGAGCTTGGGGCAGATTGCAGCCATCCGATCCCTTAACCC
66 ATCATCATCAGCCAATCTCTTACCCCGAGCCTGGGGCAGATTGCAACCATCCGAT-CCTTTACCC
*
6687657 GAGCCAAGGCAGATCACCATCAACCA
130 AAGCCAAGGCAGATCACCATCAACCA
* *
6687683 ATCTTTTACCCCGAGCCTGGGGCAGATTGTAACCATCTGATCTTTTACCCCGAG-CTAGGGGCAG
1 ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACCATTTGATCTTTTACCCCGAGCCTAGGGGCAG
* * *
6687747 ATCATCATCAGCCAATCTCTTACCCCGAGCCTGGGGCAGATTGCAACCATTCAATCTTTTACTCC
66 ATCATCATCAGCCAATCTCTTACCCCGAGCCTGGGGCAGATTGCAACCATCCGATCCTTTAC-CC
*** * *
6687812 AAGCTTGGGGCAGATCACCATTAGCCA
130 AAGC-CAAGGCAGATCACCATCAACCA
* * * ** * * *
6687839 ATCTCTTACCCCGAGCCTGAGGTAGATTGCAGTCATTCGATCTCTTACCCCGAGCCTA-AGGCAG
1 ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACCATTTGATCTTTTACCCCGAGCCTAGGGGCAG
* * *
6687903 ATCACCATCAGCTAATCTCTTACCCCAAGCC-GGAGGCAGATTGCAACCATCC
66 ATCATCATCAGCCAATCTCTTACCCCGAGCCTGG-GGCAGATTGCAACCATCC
6687955 AATATCTTAC
Statistics
Matches: 495, Mismatches: 79, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
154 7 0.01
155 260 0.53
156 222 0.45
157 6 0.01
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (155 bp):
ATCTTTTACCCCGAGCCTGGGGCAGATTGCAACCATTTGATCTTTTACCCCGAGCCTAGGGGCAG
ATCATCATCAGCCAATCTCTTACCCCGAGCCTGGGGCAGATTGCAACCATCCGATCCTTTACCCA
AGCCAAGGCAGATCACCATCAACCA
Found at i:6687921 original size:39 final size:39
Alignment explanation
Indices: 6687256--6687943 Score: 368
Period size: 39 Copynumber: 17.7 Consensus size: 39
6687246 TGGCCATTTG
* * * * * *
6687256 ATCTTTTACCCTGAGCTTGGGGTAGATCACTATCAGTCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * ** * * ** *
6687295 ATCTCTTACCCCGAGCCTAGGACAGATTGCAACCATTCG
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * * *
6687334 ATCTTTTACCCCAAGCCTAGGGCAGATCACCATCAACCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * * ** *
6687373 ATCTCTTACCCCGAGCTTGGGGCAGATTA-CAACAATTCG
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATC-AGCCA
* * * *
6687412 ATCTTTTACCTCGAGCCTGGGACAGATCATCATCAGCCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* *
6687451 ATCTCTTACCCCAAGCCTGGGGCAGATTGCAGCCAT---CCG
1 ATCTCTTACCCCGAGCCTGGGGCAGA-T-CA-CCATCAGCCA
* ** *
6687490 ATC-CGTTATCCCGAGCC-AAGGTAGATCACCATCAGCCA
1 ATCTC-TTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * * * ** * * *
6687528 ATCTTTTACCTCGAGCTTGGGGTAGATTGCAACCA-CCTG
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCC-A
* *
6687567 ATCTCTTACCTCGAG-CTAGGGGCAGATCATCATCAGCCA
1 ATCTCTTACCCCGAGCCT-GGGGCAGATCACCATCAGCCA
* * * *
6687606 ATCTTTTACCCTGAGCTTGGGGCAGATTGCAGCCAT---CCG
1 ATCTCTTACCCCGAGCCTGGGGCAGA-T-CA-CCATCAGCCA
* * ** *
6687645 ATCCCTTAACCCGAGCC-AAGGCAGATCACCATCAACCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * *
6687683 ATCTTTTACCCCGAGCCTGGGGCAGATTGTAACCATCTG---
1 ATCTCTTACCCCGAGCCTGGGGCAGA---TCACCATCAGCCA
* *
6687722 ATCTTTTACCCCGAG-CTAGGGGCAGATCATCATCAGCCA
1 ATCTCTTACCCCGAGCCT-GGGGCAGATCACCATCAGCCA
** * * **
6687761 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAACCATTCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * * * *
6687800 ATCTTTTACTCCAAGCTTGGGGCAGATCACCATTAGCCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * ** ** *
6687839 ATCTCTTACCCCGAGCCTGAGGTAGAT-TGCAGTCATTCG
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCA-TCAGCCA
** *
6687878 ATCTCTTACCCCGAGCCTAAGGCAGATCACCATCAGCTA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
*
6687917 ATCTCTTACCCCAAGCC-GGAGGCAGAT
1 ATCTCTTACCCCGAGCCTGG-GGCAGAT
6687944 TGCAACCATC
Statistics
Matches: 477, Mismatches: 139, Indels: 66
0.70 0.20 0.10
Matches are distributed among these distances:
35 8 0.02
36 11 0.02
37 2 0.00
38 52 0.11
39 375 0.79
40 12 0.03
41 4 0.01
42 13 0.03
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
Found at i:6687963 original size:78 final size:77
Alignment explanation
Indices: 6687217--6687965 Score: 693
Period size: 78 Copynumber: 9.6 Consensus size: 77
6687207 CAGCCATTCG
* * *** ** * * * * *
6687217 ATCTTTTACCTCGAGCCTGGGGCAGATTGTGGCCATTTGATCTTTTACCCTGAGCTTGGGGTAGA
1 ATCTCTTACCCCGAGCC-GGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGGCAGA
* *
6687282 TCACTATCAGTCA
65 TCACCATCAGCCA
* * * * *
6687295 ATCTCTTACCCCGAGCCTAGGACAGATTGCAACCATTCGATCTTTTACCCCAAGCCTAGGGCAGA
1 ATCTCTTACCCCGAGCC-GGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGGCAGA
*
6687360 TCACCATCAACCA
65 TCACCATCAGCCA
* * * * * *
6687373 ATCTCTTACCCCGAGCTTGGGGCAGATTACAACAATTCGATCTTTTACCTCGAGCCT-GGGACAG
1 ATCTCTTACCCCGAGC-CGGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGG-CAG
*
6687437 ATCATCATCAGCCA
64 ATCACCATCAGCCA
* * * * *
6687451 ATCTCTTACCCCAAGCCTGGGGCAGATTGCAGCCATCCGATC-CGTTATCCCGAGCC-AAGGTAG
1 ATCTCTTACCCCGAGCC-GGGGCAGATTGCAACCATCCGATCTC-TTACCCCGAGCCTAGGGCAG
6687514 ATCACCATCAGCCA
64 ATCACCATCAGCCA
* * * * *
6687528 ATCTTTTACCTCGAGCTTGGGGTAGATTGCAACCA-CCTGATCTCTTACCTCGAG-CTAGGGGCA
1 ATCTCTTACCCCGAGC-CGGGGCAGATTGCAACCATCC-GATCTCTTACCCCGAGCCTA-GGGCA
*
6687591 GATCATCATCAGCCA
63 GATCACCATCAGCCA
* * * * * * *
6687606 ATCTTTTACCCTGAGCTTGGGGCAGATTGCAGCCATCCGATCCCTTAACCCGAGCC-AAGGCAGA
1 ATCTCTTACCCCGAGC-CGGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGGCAGA
*
6687670 TCACCATCAACCA
65 TCACCATCAGCCA
* * * *
6687683 ATCTTTTACCCCGAGCCTGGGGCAGATTGTAACCATCTGATCTTTTACCCCGAG-CTAGGGGCAG
1 ATCTCTTACCCCGAGCC-GGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTA-GGGCAG
*
6687747 ATCATCATCAGCCA
64 ATCACCATCAGCCA
* * * * * * *
6687761 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAACCATTCAATCTTTTACTCCAAGCTTGGGGCAGA
1 ATCTCTTACCCCGAGCC-GGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGGCAGA
*
6687826 TCACCATTAGCCA
65 TCACCATCAGCCA
* * ** * *
6687839 ATCTCTTACCCCGAGCCTGAGGTAGATTGCAGTCATTCGATCTCTTACCCCGAGCCTAAGGCAGA
1 ATCTCTTACCCCGAGCC-GGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGGCAGA
*
6687904 TCACCATCAGCTA
65 TCACCATCAGCCA
* * *
6687917 ATCTCTTACCCCAAGCCGGAGGCAGATTGCAACCATCCAATATCTTACC
1 ATCTCTTACCCCGAGCCGG-GGCAGATTGCAACCATCCGATCTCTTACC
6687966 TAAAAAAATC
Statistics
Matches: 553, Mismatches: 101, Indels: 34
0.80 0.15 0.05
Matches are distributed among these distances:
76 4 0.01
77 123 0.22
78 422 0.76
79 4 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (77 bp):
ATCTCTTACCCCGAGCCGGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGGCAGAT
CACCATCAGCCA
Found at i:6689907 original size:30 final size:31
Alignment explanation
Indices: 6689869--6690084 Score: 225
Period size: 30 Copynumber: 7.2 Consensus size: 31
6689859 TATTTTGTTT
6689869 AAAAATTACATTTTGACCCTTAAACTTTT-C
1 AAAAATTACATTTTGACCCTTAAACTTTTCC
* *
6689899 AAATATTACATTTTAACCCTTGAAA-TTTTCC
1 AAAAATTACATTTTGACCCTT-AAACTTTTCC
*
6689930 AAAAATTACATTTTGACCCTCAAAC-TTT-C
1 AAAAATTACATTTTGACCCTTAAACTTTTCC
** **
6689959 AAAAATTATGTTTTGATTCTTAAAC--TTCC
1 AAAAATTACATTTTGACCCTTAAACTTTTCC
*
6689988 AAAAATTACATTTTCACCCTTAAACTTTTCC
1 AAAAATTACATTTTGACCCTTAAACTTTTCC
* * * *
6690019 -AAAGTCACATTTTCACCCCTAAACTTTTCC
1 AAAAATTACATTTTGACCCTTAAACTTTTCC
* *
6690049 -AAAATTACATTTTGAACCC-CAAACTTCTCC
1 AAAAATTACATTTTG-ACCCTTAAACTTTTCC
6690079 AAAAAT
1 AAAAAT
6690085 CCCATTTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
28 2 0.01
29 42 0.27
30 76 0.49
31 35 0.23
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (31 bp):
AAAAATTACATTTTGACCCTTAAACTTTTCC
Found at i:6690060 original size:60 final size:61
Alignment explanation
Indices: 6689869--6690209 Score: 225
Period size: 60 Copynumber: 5.8 Consensus size: 61
6689859 TATTTTGTTT
* * * *
6689869 AAAAATTACATTTTGACCCTTAAACTTTT-CAAATATTACATTTTAACCCTTGAAA-TTTTCC
1 AAAAATTACATTTTGACCCTCAAACTTTTCCAAA-ATCACATTTTCACCCCT-AAACTTTTCC
* * ** * ** *
6689930 AAAAATTACATTTTGACCCTCAAAC-TTTCAAAAATTATGTTTTGATTCTTAAAC--TTCC
1 AAAAATTACATTTTGACCCTCAAACTTTTCCAAAATCACATTTTCACCCCTAAACTTTTCC
* * *
6689988 AAAAATTACATTTTCACCCTTAAACTTTTCCAAAGTCACATTTTCACCCCTAAACTTTTCC
1 AAAAATTACATTTTGACCCTCAAACTTTTCCAAAATCACATTTTCACCCCTAAACTTTTCC
* * *
6690049 -AAAATTACATTTTGAACCC-CAAACTTCTCCAAAAATCCCA-TTTCAACCCC-AAACTTCTCC
1 AAAAATTACATTTTG-ACCCTCAAACTTTTCC-AAAATCACATTTTC-ACCCCTAAACTTTTCC
* * * * * * * *
6690109 -AAAATTATGATCTTG-CCCTCGAAC--ATCAAAAAATTACCATTTTC-CCCC-GAAC--ATCC
1 AAAAATTA-CATTTTGACCCTCAAACTTTTC-CAAAATCA-CATTTTCACCCCTAAACTTTTCC
*
6690165 AAAAATTACCATTTTG-CCCTCAAA-TTTTCAAAAATCACATTTTCA
1 AAAAATTA-CATTTTGACCCTCAAACTTTTCCAAAATCACATTTTCA
6690210 ACCTCAAAGT
Statistics
Matches: 224, Mismatches: 39, Indels: 38
0.74 0.13 0.13
Matches are distributed among these distances:
56 10 0.04
57 26 0.12
58 43 0.19
59 28 0.12
60 65 0.29
61 52 0.23
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (61 bp):
AAAAATTACATTTTGACCCTCAAACTTTTCCAAAATCACATTTTCACCCCTAAACTTTTCC
Found at i:6690062 original size:89 final size:90
Alignment explanation
Indices: 6689869--6690084 Score: 244
Period size: 89 Copynumber: 2.4 Consensus size: 90
6689859 TATTTTGTTT
* *
6689869 AAAAATTACATTTTGACCCTTAAACTTTTCAAATATTACATTTTAACCCTTGAAATTTTCCAAAA
1 AAAAATTACATTTTGACCCTTAAACTTTCCAAAAATTACATTTTAACCCTTGAAATTTTCCAAAA
* *
6689934 ATTACATTTTGACCCTCAAACTTTC
66 ATCACATTTTCACCCTCAAACTTTC
** ** *
6689959 AAAAATTATGTTTTGATTCTTAAAC-TTCCAAAAATTACATTTTCACCCTT-AAACTTTTCC-AA
1 AAAAATTACATTTTGACCCTTAAACTTTCCAAAAATTACATTTTAACCCTTGAAA-TTTTCCAAA
*
6690021 AGTCACATTTTCACCC-CTAAACTTTTC
65 AATCACATTTTCACCCTC-AAAC-TTTC
* *
6690048 CAAAATTACATTTTGAACCC-CAAACTTCTCCAAAAAT
1 AAAAATTACATTTTG-ACCCTTAAACTT-TCCAAAAAT
6690085 CCCATTTCAA
Statistics
Matches: 104, Mismatches: 16, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
87 1 0.01
88 22 0.21
89 48 0.46
90 24 0.23
91 9 0.09
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (90 bp):
AAAAATTACATTTTGACCCTTAAACTTTCCAAAAATTACATTTTAACCCTTGAAATTTTCCAAAA
ATCACATTTTCACCCTCAAACTTTC
Found at i:6690097 original size:30 final size:31
Alignment explanation
Indices: 6689985--6690112 Score: 131
Period size: 30 Copynumber: 4.2 Consensus size: 31
6689975 TTCTTAAACT
* * *
6689985 TCCAAAAATTACATTTTC-ACCCTTAAACTTT
1 TCCAAAAATCACATTTTCAACCC-CAAACTTC
* *
6690016 TCC-AAAGTCACATTTTC-ACCCCTAAACTTT
1 TCCAAAAATCACATTTTCAACCCC-AAACTTC
* *
6690046 TCC-AAAATTACATTTTGAACCCCAAACTTC
1 TCCAAAAATCACATTTTCAACCCCAAACTTC
*
6690076 TCCAAAAATCCCA-TTTCAACCCCAAACTTC
1 TCCAAAAATCACATTTTCAACCCCAAACTTC
6690106 TCCAAAA
1 TCCAAAA
6690113 TTATGATCTT
Statistics
Matches: 84, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
30 69 0.82
31 15 0.18
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (31 bp):
TCCAAAAATCACATTTTCAACCCCAAACTTC
Found at i:6690103 original size:119 final size:120
Alignment explanation
Indices: 6689869--6690115 Score: 272
Period size: 119 Copynumber: 2.1 Consensus size: 120
6689859 TATTTTGTTT
* * *
6689869 AAAAATTACATTTTGACCCTTAAACTTTTCAAATATTACATTTTAACCCTTGAAATTTTCCAAAA
1 AAAAATTACATTTTCACCCTTAAACTTTTCAAATATCACATTTTAACCCCTGAAATTTTCCAAAA
*** * ** **
6689934 ATTACATTTTGACCCTCAAACTTTCAAAAATTATGTTTTGATTCTTAAACTTC-C
66 ATTACATTTTGACCCTCAAACTTTCAAAAATTACCATTTCAACCCCAAACTTCTC
* *
6689988 AAAAATTACATTTTCACCCTTAAACTTTTCCAAA-GTCACATTTTCACCCCT-AAACTTTTCC-A
1 AAAAATTACATTTTCACCCTTAAACTTTT-CAAATATCACATTTTAACCCCTGAAA-TTTTCCAA
*
6690050 AAATTACATTTTGAACCC-CAAACTTCTCCAAAAA-TCCCATTTCAACCCCAAACTTCTC
64 AAATTACATTTTG-ACCCTCAAACTT-T-CAAAAATTACCATTTCAACCCCAAACTTCTC
*
6690108 CAAAATTA
1 AAAAATTA
6690116 TGATCTTGCC
Statistics
Matches: 107, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
118 24 0.22
119 65 0.61
120 18 0.17
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (120 bp):
AAAAATTACATTTTCACCCTTAAACTTTTCAAATATCACATTTTAACCCCTGAAATTTTCCAAAA
ATTACATTTTGACCCTCAAACTTTCAAAAATTACCATTTCAACCCCAAACTTCTC
Found at i:6690141 original size:29 final size:28
Alignment explanation
Indices: 6690121--6690183 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
6690111 AATTATGATC
*
6690121 TTGCCCTCGAACATCAAAAAATTACCAT
1 TTGCCCCCGAACATCAAAAAATTACCAT
* *
6690149 TTTCCCCCGAACATCCAAAAATTACCATT
1 TTGCCCCCGAACATCAAAAAATTACCA-T
6690178 TTGCCC
1 TTGCCC
6690184 TCAAATTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 24 0.80
29 6 0.20
ACGTcount: A:0.33, C:0.33, G:0.06, T:0.27
Consensus pattern (28 bp):
TTGCCCCCGAACATCAAAAAATTACCAT
Found at i:6691680 original size:70 final size:71
Alignment explanation
Indices: 6691562--6691706 Score: 247
Period size: 70 Copynumber: 2.1 Consensus size: 71
6691552 ATCTTACATA
* * *
6691562 AATACTTGTCAAACACATGAACCAATTTAAGTAACGTTATTAGTCCAAGATGAAAGTGGCAACTA
1 AATACTTGTCAAACACATGAACCAATTTAACTAACGTCATTAATCCAAGATGAAAGTGGCAACTA
6691627 ATGTTG
66 ATGTTG
*
6691633 AATA-TTGTCAAACACATGAACCAATTTGACTAACGTCATTAATCCAAGATGAAAGTGGCAACTA
1 AATACTTGTCAAACACATGAACCAATTTAACTAACGTCATTAATCCAAGATGAAAGTGGCAACTA
6691697 ATGTTG
66 ATGTTG
6691703 AATA
1 AATA
6691707 AGAAGCCCAA
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
70 66 0.94
71 4 0.06
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (71 bp):
AATACTTGTCAAACACATGAACCAATTTAACTAACGTCATTAATCCAAGATGAAAGTGGCAACTA
ATGTTG
Found at i:6691946 original size:47 final size:46
Alignment explanation
Indices: 6691861--6691950 Score: 146
Period size: 47 Copynumber: 1.9 Consensus size: 46
6691851 TTTATGTTTA
*
6691861 AAAGATGTGTTTTTGGGTAAATTTTAAAAGATTGTTTTTATTTATC
1 AAAGATGTGTTTTTGGGTAAATTTTAAAAGATAGTTTTTATTTATC
6691907 AAAGATGTGTTTTTTGGGTAAATTTTAAAAGA-AGATTTTTATTT
1 AAAGATGTG-TTTTTGGGTAAATTTTAAAAGATAG-TTTTTATTT
6691951 TTCTTTCCTA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
46 10 0.24
47 31 0.76
ACGTcount: A:0.32, C:0.01, G:0.18, T:0.49
Consensus pattern (46 bp):
AAAGATGTGTTTTTGGGTAAATTTTAAAAGATAGTTTTTATTTATC
Found at i:6693114 original size:45 final size:45
Alignment explanation
Indices: 6693013--6693280 Score: 190
Period size: 45 Copynumber: 6.2 Consensus size: 45
6693003 GTAAACTGGA
* *
6693013 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGGGAT
1 GGTGGTGGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGT--GG-T
* *
6693061 GAAAGTGGTGGTGGAGGAGACTTGTACTCGTAAGGATGC-T---T-G-
1 G---GTGGTGGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGT
* *
6693103 GGTGGTGGTGGTGGAGACTTATACTTGTAA--A--C-T-GGAGGT
1 GGTGGTGGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGT
* *
6693142 GGT-G-GG-GGTGGAGAATTGTACTTGTAAGGGTGCTTGGGTGGT
1 GGTGGTGGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGT
* * * * * * *
6693184 GATGGTAGG-GGTGGGGATTTGTACTTGTAGGGGTGTTTCGGTGGT
1 GGTGGT-GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGT
* * *
6693229 GATGGTGGTGGTGGGGACTCGTACTTGTAAGGATGCTTGGGTGGT
1 GGTGGTGGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGT
*
6693274 GATGGTG
1 GGTGGTG
6693281 AAGGAGGTGG
Statistics
Matches: 179, Mismatches: 24, Indels: 37
0.75 0.10 0.15
Matches are distributed among these distances:
35 2 0.01
36 19 0.11
37 3 0.02
38 2 0.01
39 29 0.16
40 1 0.01
41 1 0.01
42 8 0.04
43 1 0.01
44 3 0.02
45 76 0.42
47 1 0.01
48 1 0.01
50 1 0.01
51 31 0.17
ACGTcount: A:0.16, C:0.07, G:0.47, T:0.31
Consensus pattern (45 bp):
GGTGGTGGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGT
Found at i:6693182 original size:36 final size:36
Alignment explanation
Indices: 6693067--6693182 Score: 92
Period size: 36 Copynumber: 3.1 Consensus size: 36
6693057 GGATGAAAGT
* * * *
6693067 GGTGGTGGAGGAGACTTGTACTCGTAAGGATGCTTG
1 GGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTG
* * * *
6693103 GGTGGTGGTGGTGGAGACTTATACTTGTAAACTGGAG-GT-
1 GGT-G-GG-GGTGGAGACTTGTACTTGT-AA-GGGTGCTTG
*
6693142 GGTGGGGGTGGAGAATTGTACTTGTAAGGGTGCTTG
1 GGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTG
6693178 GGTGG
1 GGTGG
6693183 TGATGGTAGG
Statistics
Matches: 60, Mismatches: 13, Indels: 14
0.69 0.15 0.16
Matches are distributed among these distances:
34 3 0.05
35 3 0.05
36 25 0.42
37 3 0.05
38 2 0.03
39 19 0.32
40 3 0.05
41 2 0.03
ACGTcount: A:0.18, C:0.08, G:0.45, T:0.29
Consensus pattern (36 bp):
GGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTG
Found at i:6693196 original size:90 final size:86
Alignment explanation
Indices: 6693101--6693347 Score: 189
Period size: 90 Copynumber: 2.8 Consensus size: 86
6693091 TAAGGATGCT
6693101 TGGGTGGTGGTGGTGGAGACTTATACTTGTAAACTGGAGGTGGTGGGGGTGGAGAATTGTACTTG
1 TGGGTGG-GGTGGTGGAGACTTATACTTGTAAACTGG-GGTGGTGGGGGTGGAGAATTGTACTTG
*
6693166 TAAGGGTGCTTGGGTGGTGATGG
64 TAAGGATGCTTGGGTGGTGATGG
* * * ** ** * * * * *
6693189 TAGGGGTGGGGAT--TTG-TACTTGTAGGGGTGT-TTCGGTGGTGATGGTGGTGGTGGGGACTCG
1 T--GGGTGGGG-TGGTGGAGACTTATA--CTTGTAAAC--TGG-GGTGGTGGGGGTGGAGAATTG
6693250 TACTTGTAAGGATGCTTGGGTGGTGATGG
58 TACTTGTAAGGATGCTTGGGTGGTGATGG
* * * * *
6693279 TGAAG-GAGGTGGTGGAGACTTATACTTGTAAACAGGGGTTGGTGGGGGAGGAGATTTGTACTTG
1 TG-GGTGGGGTGGTGGAGACTTATACTTGTAAACTGGGG-TGGTGGGGGTGGAGAATTGTACTTG
6693343 TAAGG
64 TAAGG
6693348 CTCCGTGTGT
Statistics
Matches: 116, Mismatches: 30, Indels: 27
0.67 0.17 0.16
Matches are distributed among these distances:
86 1 0.01
87 34 0.29
88 11 0.09
89 9 0.08
90 61 0.53
ACGTcount: A:0.17, C:0.06, G:0.46, T:0.31
Consensus pattern (86 bp):
TGGGTGGGGTGGTGGAGACTTATACTTGTAAACTGGGGTGGTGGGGGTGGAGAATTGTACTTGTA
AGGATGCTTGGGTGGTGATGG
Found at i:6697602 original size:45 final size:43
Alignment explanation
Indices: 6697551--6697828 Score: 167
Period size: 45 Copynumber: 6.3 Consensus size: 43
6697541 GTAAACTAGA
* * * * *
6697551 GGTGGTGG-GGGTGGAGACTTGTACTCGTAGGGGTGTTTTGGC
1 GGTGATGGTGGGTGGAGACTTGTACTCGTAGGGATGCTTGGGT
*
6697593 GGTGATGGT--G-GG-GACTTGTACTTGTAGGGATGCTTGGGT
1 GGTGATGGTGGGTGGAGACTTGTACTCGTAGGGATGCTTGGGT
*
6697632 GGTGATGGTGGTGTAGGAGACTTGTACTCGTAAGGATGCTTGGGT
1 GGTGATGGTGG-GT-GGAGACTTGTACTCGTAGGGATGCTTGGGT
* * * ****
6697677 GGTGATGGT-GGAGGAG-GTGGTGGGGGT-GGAGACTTGTACTCGTAGGGGT
1 GGTGATGGTGGGTGGAGACTTGTACTCGTAGG-GA--TG--CT--T--GGGT
* ** * *
6697726 GTTTTGGCGGTGATGGTGGGGACTTGTACTTGTAGGGATGCTTGGGT
1 G--GTGATGGTG--GGTGGAGACTTGTACTCGTAGGGATGCTTGGGT
*
6697773 GGTGATGGTGGTGTAGGAGACTTGTACTCGTAAGGATGCTTGGGT
1 GGTGATGGTGG-GT-GGAGACTTGTACTCGTAGGGATGCTTGGGT
6697818 GGTGATGGTGG
1 GGTGATGGTGG
6697829 AGGAGGTGGT
Statistics
Matches: 178, Mismatches: 33, Indels: 47
0.69 0.13 0.18
Matches are distributed among these distances:
39 31 0.17
40 3 0.02
41 8 0.04
42 12 0.07
43 4 0.02
44 5 0.03
45 80 0.45
47 6 0.03
49 6 0.03
51 7 0.04
53 2 0.01
54 5 0.03
55 7 0.04
56 2 0.01
ACGTcount: A:0.14, C:0.08, G:0.47, T:0.31
Consensus pattern (43 bp):
GGTGATGGTGGGTGGAGACTTGTACTCGTAGGGATGCTTGGGT
Found at i:6697614 original size:39 final size:39
Alignment explanation
Indices: 6697560--6697689 Score: 134
Period size: 39 Copynumber: 3.2 Consensus size: 39
6697550 AGGTGGTGGG
* * *
6697560 GGTGGAGACTTGTACTCGTAGGGGTGTTTTGGCGGTGAT
1 GGTGGAGACTTGTACTCGTAGGGATGCTTGGGCGGTGAT
* * *
6697599 GGTGGGGACTTGTACTTGTAGGGATGCTTGGGTGGTGATGGT
1 GGTGGAGACTTGTACTCGTAGGGATGCTTGGGCGGTGA---T
* *
6697641 GGTGTAGGAGACTTGTACTCGTAAGGATGCTTGGGTGGTGAT
1 -G-GT-GGAGACTTGTACTCGTAGGGATGCTTGGGCGGTGAT
6697683 GGTGGAG
1 GGTGGAG
6697690 GAGGTGGTGG
Statistics
Matches: 76, Mismatches: 9, Indels: 12
0.78 0.09 0.12
Matches are distributed among these distances:
39 36 0.47
40 2 0.03
41 1 0.01
42 2 0.03
43 1 0.01
44 2 0.03
45 32 0.42
ACGTcount: A:0.15, C:0.08, G:0.45, T:0.32
Consensus pattern (39 bp):
GGTGGAGACTTGTACTCGTAGGGATGCTTGGGCGGTGAT
Found at i:6697755 original size:39 final size:39
Alignment explanation
Indices: 6697701--6697830 Score: 134
Period size: 39 Copynumber: 3.2 Consensus size: 39
6697691 AGGTGGTGGG
* * *
6697701 GGTGGAGACTTGTACTCGTAGGGGTGTTTTGGCGGTGAT
1 GGTGGAGACTTGTACTCGTAGGGATGCTTGGGCGGTGAT
* * *
6697740 GGTGGGGACTTGTACTTGTAGGGATGCTTGGGTGGTGATGGT
1 GGTGGAGACTTGTACTCGTAGGGATGCTTGGGCGGTGA---T
* *
6697782 GGTGTAGGAGACTTGTACTCGTAAGGATGCTTGGGTGGTGAT
1 -G-GT-GGAGACTTGTACTCGTAGGGATGCTTGGGCGGTGAT
6697824 GGTGGAG
1 GGTGGAG
6697831 GAGGTGGTGG
Statistics
Matches: 76, Mismatches: 9, Indels: 12
0.78 0.09 0.12
Matches are distributed among these distances:
39 36 0.47
40 2 0.03
41 1 0.01
42 2 0.03
43 1 0.01
44 2 0.03
45 32 0.42
ACGTcount: A:0.15, C:0.08, G:0.45, T:0.32
Consensus pattern (39 bp):
GGTGGAGACTTGTACTCGTAGGGATGCTTGGGCGGTGAT
Found at i:6697776 original size:141 final size:141
Alignment explanation
Indices: 6697549--6697840 Score: 584
Period size: 141 Copynumber: 2.1 Consensus size: 141
6697539 TTGTAAACTA
6697549 GAGGTGGTGGGGGTGGAGACTTGTACTCGTAGGGGTGTTTTGGCGGTGATGGTGGGGACTTGTAC
1 GAGGTGGTGGGGGTGGAGACTTGTACTCGTAGGGGTGTTTTGGCGGTGATGGTGGGGACTTGTAC
6697614 TTGTAGGGATGCTTGGGTGGTGATGGTGGTGTAGGAGACTTGTACTCGTAAGGATGCTTGGGTGG
66 TTGTAGGGATGCTTGGGTGGTGATGGTGGTGTAGGAGACTTGTACTCGTAAGGATGCTTGGGTGG
6697679 TGATGGTGGAG
131 TGATGGTGGAG
6697690 GAGGTGGTGGGGGTGGAGACTTGTACTCGTAGGGGTGTTTTGGCGGTGATGGTGGGGACTTGTAC
1 GAGGTGGTGGGGGTGGAGACTTGTACTCGTAGGGGTGTTTTGGCGGTGATGGTGGGGACTTGTAC
6697755 TTGTAGGGATGCTTGGGTGGTGATGGTGGTGTAGGAGACTTGTACTCGTAAGGATGCTTGGGTGG
66 TTGTAGGGATGCTTGGGTGGTGATGGTGGTGTAGGAGACTTGTACTCGTAAGGATGCTTGGGTGG
6697820 TGATGGTGGAG
131 TGATGGTGGAG
6697831 GAGGTGGTGG
1 GAGGTGGTGG
6697841 AGACTTATAC
Statistics
Matches: 151, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 151 1.00
ACGTcount: A:0.14, C:0.08, G:0.48, T:0.30
Consensus pattern (141 bp):
GAGGTGGTGGGGGTGGAGACTTGTACTCGTAGGGGTGTTTTGGCGGTGATGGTGGGGACTTGTAC
TTGTAGGGATGCTTGGGTGGTGATGGTGGTGTAGGAGACTTGTACTCGTAAGGATGCTTGGGTGG
TGATGGTGGAG
Found at i:6702535 original size:34 final size:34
Alignment explanation
Indices: 6702487--6702581 Score: 93
Period size: 34 Copynumber: 2.8 Consensus size: 34
6702477 ATATGGCATG
* * * *
6702487 CTTATAACAGATCAACACGGTGGCAATTAATGTC
1 CTTATAACAGATCAACACAGTAGCAAATAATATC
* * *
6702521 CTTATAACATATCAATACAGTAGCAAATAATATG
1 CTTATAACAGATCAACACAGTAGCAAATAATATC
**
6702555 CTTATAAC-GAATCAATTCAGTAGCAAA
1 CTTATAACAG-ATCAACACAGTAGCAAA
6702582 GACATGCTTT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
34 51 1.00
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (34 bp):
CTTATAACAGATCAACACAGTAGCAAATAATATC
Found at i:6705323 original size:30 final size:30
Alignment explanation
Indices: 6705282--6705406 Score: 162
Period size: 30 Copynumber: 4.1 Consensus size: 30
6705272 TTGCTCTGTA
*
6705282 GACCCCAAAAC-TTTCTAAAAATTATATTTT
1 GACCCCAAAACTTTTC-CAAAATTATATTTT
*
6705312 GACCCCGAAACTTTTCCAAAATTATATTTT
1 GACCCCAAAACTTTTCCAAAATTATATTTT
* *
6705342 GACCCTAAAACTTTTCCAAAATTACATTTT
1 GACCCCAAAACTTTTCCAAAATTATATTTT
* * *
6705372 GACCCTAAAACTTTTCCAATATTACATTTTT
1 GACCCCAAAACTTTTCCAAAATTATA-TTTT
6705403 GACC
1 GACC
6705407 TCGATTTTGC
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
30 75 0.86
31 12 0.14
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.37
Consensus pattern (30 bp):
GACCCCAAAACTTTTCCAAAATTATATTTT
Found at i:6705618 original size:30 final size:30
Alignment explanation
Indices: 6705560--6705619 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
6705550 CTCACCAATA
*
6705560 TTCGCATTTATTTGCATCTGCATCTTATATT
1 TTCGCATTTATTT-CATCTGCATATTATATT
*
6705591 TTCGCATATTATTT-ATCTGCTTATTATAT
1 TTCGCAT-TTATTTCATCTGCATATTATAT
6705620 CGCTTCATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 13 0.50
31 7 0.27
32 6 0.23
ACGTcount: A:0.22, C:0.17, G:0.08, T:0.53
Consensus pattern (30 bp):
TTCGCATTTATTTCATCTGCATATTATATT
Found at i:6708463 original size:15 final size:15
Alignment explanation
Indices: 6708433--6708462 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
6708423 CCTATTTCAA
6708433 TGGAAAATTTAATTT
1 TGGAAAATTTAATTT
6708448 TGGAAAA-TTAATTT
1 TGGAAAATTTAATTT
6708462 T
1 T
6708463 TATTTGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (15 bp):
TGGAAAATTTAATTT
Found at i:6710772 original size:23 final size:22
Alignment explanation
Indices: 6710716--6710814 Score: 65
Period size: 23 Copynumber: 4.3 Consensus size: 22
6710706 ATTTTAAATT
*
6710716 TTAAATTTTAAATAACATTT-TA
1 TTAAATTTTAAA-AATATTTATA
* *
6710738 GTATATTATTAAAAATATTTATA
1 TTAAATT-TTAAAAATATTTATA
* *
6710761 TTAATATTTTAATAATAAATATATA
1 TTAA-ATTTTAA-AA-ATATTTATA
* *
6710786 TTAAAATTTATAAATATTTAATA
1 TTAAATTTTAAAAATATTT-ATA
*
6710809 ATAAAT
1 TTAAAT
6710815 GTTTTATAGT
Statistics
Matches: 58, Mismatches: 13, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
22 15 0.26
23 22 0.38
24 10 0.17
25 11 0.19
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (22 bp):
TTAAATTTTAAAAATATTTATA
Found at i:6711490 original size:33 final size:30
Alignment explanation
Indices: 6711447--6711509 Score: 74
Period size: 33 Copynumber: 2.0 Consensus size: 30
6711437 AAAATTAAAG
6711447 TTTCAAGTATACATT-TGAACCACAATTAAAATT
1 TTTCAAGTATA-ATTCT--ACCA-AATTAAAATT
*
6711480 TTTCATGTATAATTCTACCAAATTAAAATT
1 TTTCAAGTATAATTCTACCAAATTAAAATT
6711510 CACGTATACA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
30 10 0.36
31 4 0.14
32 3 0.11
33 11 0.39
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.40
Consensus pattern (30 bp):
TTTCAAGTATAATTCTACCAAATTAAAATT
Found at i:6712423 original size:45 final size:45
Alignment explanation
Indices: 6712374--6712663 Score: 328
Period size: 48 Copynumber: 6.1 Consensus size: 45
6712364 TGGAGGAGGA
6712374 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGA---TGGT
* *
6712422 GGTGGTGGGGACTTGTACTTATAAGGGTGCTTGGGGGGTGATGGTGGT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGA---TGGT
* * *
6712470 GGTGGTGGAGGTGACTTGTACTTGTAGGGGTGCTTGGGTGGTGACGGT
1 GGTGGTGGA---GACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGT
* * *
6712518 GGGGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGG-GG-G-TGATGGT
* *
6712566 GGTGGTGGAGGTGACTTGTACTTGTACGGGTGCTTGGGTGGTGATGGT
1 GGTGGTGGA---GACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGT
* * *
6712614 GGGGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGT
6712659 GGTGG
1 GGTGG
6712664 AGGGGGTGGA
Statistics
Matches: 211, Mismatches: 22, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
45 64 0.30
46 1 0.00
47 1 0.00
48 89 0.42
49 1 0.00
50 1 0.00
51 54 0.26
ACGTcount: A:0.11, C:0.07, G:0.51, T:0.31
Consensus pattern (45 bp):
GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGT
Found at i:6712475 original size:51 final size:48
Alignment explanation
Indices: 6712374--6713063 Score: 677
Period size: 51 Copynumber: 14.5 Consensus size: 48
6712364 TGGAGGAGGA
* *
6712374 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
* *
6712422 GGTGGTGGGGACTTGTACTTATAAGGGTGCTTGGGGGGTGATGGTGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
* *
6712470 GGTGGTGGAGGTGACTTGTACTTGTAGGGGTGCTTGGGTGGTGACGGT-G-
1 GGTGGT-G-GG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
6712519 GG-GGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
*
6712566 GGTGGTGGAGGTGACTTGTACTTGTACGGGTGCTTGGGTGGTGATGGT-G-
1 GGTGGT-G-GG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
6712615 GG-GGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
* * *
6712662 GGAGGGGGTGGAGACTTATACTTGTACA-----C-----T-G-GA-GGTGGT
1 ---GGTGGTGGGGACTTGTACTTGTA-AGGGTGCTTGGGTGGTGATGGTGGT
* * *
6712701 GGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGGGATGGTGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
*
6712749 GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
* * *
6712797 GGTGGTGGTGGAGACTTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGT
1 GGTGGT-G-GG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
* * *
6712848 GGAGGTGGTGGAGACTTATACTTGTAA----AC-----T-G-GA-GGTGGT
1 ---GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
* *
6712887 GGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT---GGT
* *
6712938 GGGGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
* * *
6712986 GGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGAGGA
1 GGTGGT-G-GG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT---GGT
* *
6713040 GGTGGTGGAGACTTATACTTGTAA
1 GGTGGTGGGGACTTGTACTTGTAA
6713064 ACAGGAGTTG
Statistics
Matches: 553, Mismatches: 33, Indels: 109
0.80 0.05 0.16
Matches are distributed among these distances:
35 1 0.00
36 44 0.08
39 12 0.02
40 6 0.01
41 2 0.00
42 2 0.00
45 71 0.13
46 8 0.01
47 10 0.02
48 128 0.23
49 8 0.01
50 12 0.02
51 231 0.42
52 3 0.01
53 2 0.00
54 13 0.02
ACGTcount: A:0.14, C:0.07, G:0.48, T:0.31
Consensus pattern (48 bp):
GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT
Found at i:6712543 original size:96 final size:96
Alignment explanation
Indices: 6712374--6713063 Score: 785
Period size: 96 Copynumber: 7.2 Consensus size: 96
6712364 TGGAGGAGGA
*
6712374 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGTGGTGGTGGGGACTTGTA
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT-G-GG-GGTGGGGACTTGTA
* *
6712439 CTTATAAGGGTGCTTGGGGGGTGATGGTGGTGGT
63 CTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * * *
6712473 GGTGGAGGTGACTTGTACTTGTAGGGGTGCTTGGGTGGTGACGGTGGGGGTGGGGACTTGTACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGACTTGTACTT
6712538 GTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
66 GTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * *
6712569 GGTGGAGGTGACTTGTACTTGTACGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGACTTGTACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGACTTGTACTT
*
6712634 GTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
66 GTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * * *
6712665 GGGGGTGGAGACTTATACTTGTACA-----C-T-GG-AG-G-TGGTGGGGGTGGAGACTTGTACT
1 GGTGGTGGAGACTTGTACTTGTA-AGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGACTTGTACT
*
6712720 TGTAAGGGTGCTTGGGTGGGGATGGTGGTGGT
65 TGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
*
6712752 GGT-G-GG-GACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGAGACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT-G-GG-GGT-G-GG-GACTT
* * * *
6712814 GTATTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGA
60 GTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * * *
6712851 GGTGGTGGAGACTTATACTTGTAA----AC-T-GG-AG-G-TGGTGGGGGTGGAGACTTGTACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGACTTGTACTT
*
6712907 GTAAGGGTGCTTGGGTGGTGATGGTGGGGGT
66 GTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * *
6712938 GGGGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT-G-GG-GGT-G-GG-GACTT
* * *
6713003 GTACTTGTAAGGATGCTTGGGTGGTGATGGTGGAGGA
60 GTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
*
6713040 GGTGGTGGAGACTTATACTTGTAA
1 GGTGGTGGAGACTTGTACTTGTAA
6713064 ACAGGAGTTG
Statistics
Matches: 507, Mismatches: 49, Indels: 67
0.81 0.08 0.11
Matches are distributed among these distances:
83 1 0.00
84 13 0.03
85 2 0.00
86 1 0.00
87 112 0.22
88 3 0.01
89 3 0.01
90 7 0.01
91 5 0.01
92 4 0.01
93 10 0.02
94 3 0.01
95 4 0.01
96 167 0.33
97 5 0.01
98 5 0.01
99 83 0.16
100 2 0.00
101 3 0.01
102 74 0.15
ACGTcount: A:0.14, C:0.07, G:0.48, T:0.31
Consensus pattern (96 bp):
GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGACTTGTACTT
GTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
Found at i:6712918 original size:138 final size:138
Alignment explanation
Indices: 6712743--6713012 Score: 450
Period size: 138 Copynumber: 2.0 Consensus size: 138
6712733 GGGTGGGGAT
* * * *
6712743 GGTGGTGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGTGG
1 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGGGGTGGGGGTGG
* * *
6712808 AGACTTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGT
66 AGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTATACTTGT
6712873 AAACTGGA
131 AAACTGGA
*
6712881 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGGTGG
1 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGGGGTGGGGGTGG
* *
6712946 GGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGT
66 AGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTATACTTGT
6713011 AA
131 AA
6713013 GGATGCTTGG
Statistics
Matches: 122, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
138 122 1.00
ACGTcount: A:0.15, C:0.06, G:0.47, T:0.31
Consensus pattern (138 bp):
GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGGGGTGGGGGTGG
AGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTATACTTGT
AAACTGGA
Found at i:6713053 original size:189 final size:185
Alignment explanation
Indices: 6712374--6713122 Score: 995
Period size: 189 Copynumber: 4.0 Consensus size: 185
6712364 TGGAGGAGGA
* * *
6712374 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGTGGTGGTGGGGACTTGTA
1 GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGGGACTTGTA
* * * * * * * **
6712439 CTTATAAGGGTGCTTGGGGGGTGATGGTGGTGGTGGTGGAGGTGACTTGTACTTGTAGGGGTGCT
66 CTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTA----AAC-
* *
6712504 TGGGTGGTGACGGTGGGGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
126 T-GGAGGT---GGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGG-GGT
* * * *
6712569 GGTGGAGGTGACTTGTACTTGTACGGGTGCTTGGGTGGTGATGGT-G-GG-GGTGGGGACTTGTA
1 GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGGGACTTGTA
* * *
6712631 CTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGGGGTGGAGACTTATACTTGTACACTGGAG
66 CTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTAAACTGGAG
*
6712696 GTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGGGATGGT--GGT
131 GTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGT
6712749 GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGAGACTT
1 GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGT-G-GG-GACTT
* *
6712814 GTATTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTAAACTG
63 GTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTAAACTG
6712879 GAGGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGT
128 GAGGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT-GGGGT
* *
6712938 GGGGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTT
1 GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGT-G-GG-GACTT
* *
6713003 GTACTTGTAAGGATGCTTGGGTGGTGATGGTGGAGGAGGTGGTGGAGACTTATACTTGTAAACAG
63 GTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTAAACTG
* * * * * * *
6713068 GAGTTGGTGGGGGAGGAGATTTGTACTTGTAAGGCTTCTTGTGTGGTGGTGGTGG
128 GAGGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGG
6713123 AGGAGAAGAA
Statistics
Matches: 505, Mismatches: 40, Indels: 25
0.89 0.07 0.04
Matches are distributed among these distances:
180 44 0.09
181 1 0.00
182 2 0.00
183 49 0.10
184 1 0.00
185 2 0.00
186 122 0.24
187 1 0.00
188 3 0.01
189 172 0.34
192 64 0.13
193 2 0.00
194 1 0.00
195 41 0.08
ACGTcount: A:0.14, C:0.07, G:0.48, T:0.31
Consensus pattern (185 bp):
GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGGGACTTGTA
CTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTAAACTGGAG
GTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGT
Found at i:6713863 original size:6 final size:7
Alignment explanation
Indices: 6713837--6713866 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
6713827 TAATATTGTA
6713837 TAAAAATT
1 TAAAAA-T
6713845 TAAAAAT
1 TAAAAAT
6713852 TAAAAAT
1 TAAAAAT
6713859 TAAAAAT
1 TAAAAAT
6713866 T
1 T
6713867 TCAATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.73
8 6 0.27
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (7 bp):
TAAAAAT
Found at i:6717897 original size:86 final size:85
Alignment explanation
Indices: 6717752--6717944 Score: 210
Period size: 86 Copynumber: 2.3 Consensus size: 85
6717742 CATAACCAAT
* * *
6717752 CGAGTCGTAAGTCTTCCTTTAAACAAAATCTCATGCTCATCTTGAGTCACGAGTCTTCCTTTTAA
1 CGAGTCATGAGTCTTCCTTTAAACAAAATCTCATGCTCATCCTGAGTCACGAGTCTTCCTTTT-A
* *
6717817 AACATAACCTCATACTCCTTC
65 AACATAACCTCATACTCATCC
* ** *
6717838 CGAGTCATGAGTCTTCC-TTAAATCATAATCTCATGCTTTTCCCT-AGTCATGAGTCTTCCTTTT
1 CGAGTCATGAGTCTTCCTTTAAA-CAAAATCTCATGCTCAT-CCTGAGTCACGAGTCTTCCTTTT
* * * *
6717901 TAACATAATCTCATGCTTATCC
64 AAACATAACCTCATACTCATCC
* *
6717923 CGAGACATGAGTCTTCTTTTAA
1 CGAGTCATGAGTCTTCCTTTAA
6717945 TACACATCAA
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
85 36 0.40
86 51 0.57
87 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (85 bp):
CGAGTCATGAGTCTTCCTTTAAACAAAATCTCATGCTCATCCTGAGTCACGAGTCTTCCTTTTAA
ACATAACCTCATACTCATCC
Found at i:6717932 original size:43 final size:43
Alignment explanation
Indices: 6717752--6717944 Score: 196
Period size: 42 Copynumber: 4.5 Consensus size: 43
6717742 CATAACCAAT
* * * *
6717752 CGAGTCGTAAGTCTTCC-TTTAAACAAAATCTCATGCTCATCT
1 CGAGTCATGAGTCTTCCTTTTAAACATAATCTCATGCTCATCC
* * * * * *
6717794 TGAGTCACGAGTCTTCCTTTTAAAACATAACCTCATACTCCTTC
1 CGAGTCATGAGTCTTCCTTTT-AAACATAATCTCATGCTCATCC
**
6717838 CGAGTCATGAGTCTTCC--TTAAATCATAATCTCATGCTTTTCC
1 CGAGTCATGAGTCTTCCTTTTAAA-CATAATCTCATGCTCATCC
* * *
6717880 CTAGTCATGAGTCTTCCTTTTTAACATAATCTCATGCTTATCC
1 CGAGTCATGAGTCTTCCTTTTAAACATAATCTCATGCTCATCC
*
6717923 CGAGACATGAGTCTT-CTTTTAA
1 CGAGTCATGAGTCTTCCTTTTAA
6717945 TACACATCAA
Statistics
Matches: 123, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
41 3 0.02
42 51 0.41
43 34 0.28
44 35 0.28
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (43 bp):
CGAGTCATGAGTCTTCCTTTTAAACATAATCTCATGCTCATCC
Found at i:6719932 original size:62 final size:61
Alignment explanation
Indices: 6719856--6720026 Score: 243
Period size: 62 Copynumber: 2.8 Consensus size: 61
6719846 GAGGCTGGAT
* * * *
6719856 TGGAAAATTTATCTACTGGCTCTATAGAGTGACACCATGAAAATGGTCTACAAGTGGCATCA
1 TGGAAAAATGATCTACTAGCTCTA-AGAGCGACACCATGAAAATGGTCTACAAGTGGCATCA
* *
6719918 TGGAAAAATGATCTACTAGCTCTACGGAGCGACACCATGAAAATGGTCTACAGGTGGCATCA
1 TGGAAAAATGATCTACTAGCTCTA-AGAGCGACACCATGAAAATGGTCTACAAGTGGCATCA
* *
6719980 TGGAAAAATGATCTACTAGCTCTACGAAGCGACACCATGTAAATGGT
1 TGGAAAAATGATCTACTAGCTCTAAG-AGCGACACCATGAAAATGGT
6720027 TTACTAACTC
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
61 1 0.01
62 98 0.99
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (61 bp):
TGGAAAAATGATCTACTAGCTCTAAGAGCGACACCATGAAAATGGTCTACAAGTGGCATCA
Found at i:6721264 original size:29 final size:29
Alignment explanation
Indices: 6721194--6721266 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
6721184 TGGTAGGCCA
* *
6721194 TGTGGCAGACCATGTAGGTCACACAACCG
1 TGTGGCGGACCGTGTAGGTCACACAACCG
* *
6721223 TGTGGTAGG-CCGTGTAGGTCACATAGA-CG
1 TGTGG-CGGACCGTGTAGGTCACACA-ACCG
6721252 TGTGGCGGACCGTGT
1 TGTGGCGGACCGTGT
6721267 CGACCATACG
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
28 2 0.06
29 32 0.89
30 2 0.06
ACGTcount: A:0.21, C:0.22, G:0.36, T:0.22
Consensus pattern (29 bp):
TGTGGCGGACCGTGTAGGTCACACAACCG
Found at i:6723214 original size:31 final size:32
Alignment explanation
Indices: 6723171--6723238 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 32
6723161 TTTTTGGCCC
* *
6723171 ACTTCAGTCCCTACCATTATCAGACGTTCACA
1 ACTTCAGTCCCTAACATTATCAAACGTTCACA
* *
6723203 ACTT-AGTCCCTAATATTATCAAACGTTCCCA
1 ACTTCAGTCCCTAACATTATCAAACGTTCACA
6723234 A-TTCA
1 ACTTCA
6723239 ATCTTTTGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
30 2 0.06
31 25 0.81
32 4 0.13
ACGTcount: A:0.31, C:0.31, G:0.07, T:0.31
Consensus pattern (32 bp):
ACTTCAGTCCCTAACATTATCAAACGTTCACA
Found at i:6723490 original size:10 final size:10
Alignment explanation
Indices: 6723477--6723501 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
6723467 ATAAAATTCC
6723477 AAAAAATATA
1 AAAAAATATA
6723487 AAAAAATATA
1 AAAAAATATA
6723497 AAAAA
1 AAAAA
6723502 TACTAAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAATATA
Found at i:6723742 original size:16 final size:16
Alignment explanation
Indices: 6723674--6723745 Score: 99
Period size: 16 Copynumber: 4.5 Consensus size: 16
6723664 CGTTTGGTTC
*
6723674 GCTGTAATAGAATAGA
1 GCTGTAATGGAATAGA
* *
6723690 GATGCAATGGAATAGA
1 GCTGTAATGGAATAGA
6723706 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
* *
6723722 ACTGTAATGGAATAGG
1 GCTGTAATGGAATAGA
6723738 GCTGTAAT
1 GCTGTAAT
6723746 CAATAATTCA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.39, C:0.07, G:0.29, T:0.25
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:6723821 original size:44 final size:46
Alignment explanation
Indices: 6723727--6723821 Score: 115
Period size: 44 Copynumber: 2.1 Consensus size: 46
6723717 ATAGAACTGT
* * *
6723727 AATGGAATAGGGCTGTAATCAATAATTCAATTGTTTGGTTGAATGG
1 AATGGAATAAGGCTGTAATCAATAATTCAATTGTTTGATTGAATGA
* *
6723773 AATGGAATAAGGCTGTAAT-AGT-ATTC-TTGTGTTTGATTGAATGA
1 AATGGAATAAGGCTGTAATCAATAATTCAAT-TGTTTGATTGAATGA
6723817 AATGG
1 AATGG
6723822 TGCTGTAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.51
45 2 0.05
46 18 0.42
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (46 bp):
AATGGAATAAGGCTGTAATCAATAATTCAATTGTTTGATTGAATGA
Found at i:6723979 original size:58 final size:59
Alignment explanation
Indices: 6723917--6724067 Score: 218
Period size: 58 Copynumber: 2.6 Consensus size: 59
6723907 ATTTAATAAG
* * *
6723917 ATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTAATTATATTTT-AACATA
1 ATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTAATAACATTTTAAAAATA
*
6723975 ATTATTATTAAATATAATTTAAT-AAAATAATATATAATTTAATAACATTTTAAAAATA
1 ATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTAATAACATTTTAAAAATA
*
6724033 ATTATTATTAAAATATGAA-TTAATAAAAATTATAA
1 ATTATTATT-AAATAT-AATTTAATAAAAATAATAA
6724068 TATATAAAAT
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
57 25 0.30
58 37 0.45
59 11 0.13
60 10 0.12
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (59 bp):
ATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTAATAACATTTTAAAAATA
Found at i:6727107 original size:19 final size:18
Alignment explanation
Indices: 6727085--6727144 Score: 50
Period size: 17 Copynumber: 3.2 Consensus size: 18
6727075 AATTTTAGTA
6727085 TTTTTCATATTTTCTAATT
1 TTTTTCATATTTT-TAATT
*
6727104 TTTTTC-TAATTTTAATT
1 TTTTTCATATTTTTAATT
* *
6727121 ATTTTAATAAGTTTTGTAATT
1 TTTTTCAT-A-TTTT-TAATT
6727142 TTT
1 TTT
6727145 GTAATTTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
17 9 0.28
18 6 0.19
19 7 0.22
20 3 0.09
21 7 0.22
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTTCATATTTTTAATT
Found at i:6727119 original size:17 final size:18
Alignment explanation
Indices: 6727075--6727135 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 18
6727065 AATTTTATTA
* *
6727075 AATTTTAGTATTTTTCAT
1 AATTTTAATTTTTTTCAT
*
6727093 ATTTTCTAATTTTTTTC-T
1 AATTT-TAATTTTTTTCAT
* *
6727111 AATTTTAATTATTTTAAT
1 AATTTTAATTTTTTTCAT
6727129 AAGTTTT
1 AA-TTTT
6727136 GTAATTTTTG
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
17 9 0.26
18 12 0.35
19 13 0.38
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (18 bp):
AATTTTAATTTTTTTCAT
Found at i:6727125 original size:18 final size:18
Alignment explanation
Indices: 6727083--6727174 Score: 55
Period size: 18 Copynumber: 5.1 Consensus size: 18
6727073 TAAATTTTAG
*
6727083 TATTTTTCATATTTTCTAAT
1 TATTTTTC-TAATTT-TAAT
6727103 T-TTTTTCTAATTTTAAT
1 TATTTTTCTAATTTTAAT
** *
6727120 TATTTTAATAAGTTTT-GT
1 TATTTTTCTAA-TTTTAAT
* *
6727138 AATTTTTGTAATTTT-AT
1 TATTTTTCTAATTTTAAT
* *
6727155 GATTTTTACTAGTTTTAAT
1 TATTTTT-CTAATTTTAAT
6727174 T
1 T
6727175 CTTCTATTTT
Statistics
Matches: 56, Mismatches: 12, Indels: 9
0.73 0.16 0.12
Matches are distributed among these distances:
17 16 0.29
18 27 0.48
19 12 0.21
20 1 0.02
ACGTcount: A:0.26, C:0.04, G:0.05, T:0.64
Consensus pattern (18 bp):
TATTTTTCTAATTTTAAT
Found at i:6729318 original size:30 final size:31
Alignment explanation
Indices: 6729241--6729319 Score: 76
Period size: 31 Copynumber: 2.6 Consensus size: 31
6729231 TTACATTTTA
6729241 TATCAATTTGA-TTTCAATTCTAAACAATTC
1 TATCAATTTGATTTTCAATTCTAAACAATTC
* * *
6729271 AATAAAATTT-ATCTTTCACATT-TACA-AATTC
1 TAT-CAATTTGAT-TTTCA-ATTCTAAACAATTC
6729302 TATCAATTTGATTTTCAA
1 TATCAATTTGATTTTCAA
6729320 ACTTTTTAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
29 1 0.03
30 13 0.33
31 14 0.36
32 8 0.21
33 3 0.08
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.44
Consensus pattern (31 bp):
TATCAATTTGATTTTCAATTCTAAACAATTC
Found at i:6732324 original size:13 final size:14
Alignment explanation
Indices: 6732301--6732341 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
6732291 GAATAACAAT
6732301 TTATATATTTAAAA
1 TTATATATTTAAAA
6732315 TTAT-TATTT-AAA
1 TTATATATTTAAAA
6732327 TATATATATTTAAAA
1 T-TATATATTTAAAA
6732342 ATAATTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.17
13 8 0.33
14 9 0.38
15 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TTATATATTTAAAA
Found at i:6732336 original size:14 final size:13
Alignment explanation
Indices: 6732302--6732350 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
6732292 AATAACAATT
6732302 TATATATTTAAAA
1 TATATATTTAAAA
6732315 T-TATTATTTAAATA
1 TATA-TATTTAAA-A
6732329 TATATATTTAAAA
1 TATATATTTAAAA
6732342 -ATA-ATTTAA
1 TATATATTTAA
6732351 TAAATTTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
11 6 0.18
12 5 0.15
13 10 0.30
14 10 0.30
15 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
TATATATTTAAAA
Found at i:6739251 original size:24 final size:24
Alignment explanation
Indices: 6739217--6739264 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
6739207 GTTCACGAAC
*
6739217 AAGCTCGTTTATTGACTTATTTAT
1 AAGCTCATTTATTGACTTATTTAT
*
6739241 AAGCTCATTTATTGACTTGTTTAT
1 AAGCTCATTTATTGACTTATTTAT
6739265 TTATTAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50
Consensus pattern (24 bp):
AAGCTCATTTATTGACTTATTTAT
Found at i:6739417 original size:23 final size:23
Alignment explanation
Indices: 6739380--6739454 Score: 82
Period size: 23 Copynumber: 3.2 Consensus size: 23
6739370 TGTGAGCATA
*
6739380 TTCAATTATATGTTCATGAACATG
1 TTCATTTA-ATGTTCATGAACATG
*
6739404 TTCATTTAATGTTCATGAACATA
1 TTCATTTAATGTTCATGAACATG
*
6739427 TTCGA-TTAA-GTTAAATGAACATG
1 TTC-ATTTAATGTT-CATGAACATG
6739450 TTCAT
1 TTCAT
6739455 GAATATTGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
22 4 0.09
23 32 0.73
24 8 0.18
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (23 bp):
TTCATTTAATGTTCATGAACATG
Found at i:6741030 original size:12 final size:12
Alignment explanation
Indices: 6741015--6741054 Score: 55
Period size: 13 Copynumber: 3.3 Consensus size: 12
6741005 ATATTTTTTG
6741015 TTTTTAATTTAA
1 TTTTTAATTTAA
6741027 TTTTTACATTTAA
1 TTTTTA-ATTTAA
*
6741040 TTTTT-ATTTTA
1 TTTTTAATTTAA
6741051 TTTT
1 TTTT
6741055 ATAGGTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 9 0.35
12 6 0.23
13 11 0.42
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTTAATTTAA
Found at i:6741031 original size:20 final size:20
Alignment explanation
Indices: 6740989--6741031 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
6740979 AATTTAGCCA
*
6740989 TTTTTATTTTTATTTCATAT
1 TTTTTATTTTTATTTAATAT
*
6741009 TTTTTGTTTTTAATTTAAT-T
1 TTTTTATTTTT-ATTTAATAT
6741029 TTT
1 TTT
6741032 ACATTTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTTATTTTTATTTAATAT
Found at i:6743105 original size:18 final size:16
Alignment explanation
Indices: 6743082--6743123 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 16
6743072 AAATAGTATA
6743082 TTTATTTTCATTTTCATT
1 TTTATTTTCATTTT-A-T
*
6743100 TTTATTTTTATTTTAT
1 TTTATTTTCATTTTAT
6743116 TTTATTTT
1 TTTATTTT
6743124 AATTGTGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.39
17 1 0.04
18 13 0.57
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTATTTTCATTTTAT
Found at i:6743113 original size:5 final size:5
Alignment explanation
Indices: 6743082--6743124 Score: 50
Period size: 5 Copynumber: 7.8 Consensus size: 5
6743072 AAATAGTATA
6743082 TTTAT TTTCAT TTTCATT TTTATT TTTAT TTTAT TTTAT TTTA
1 TTTAT TTT-AT TTT-A-T TTTA-T TTTAT TTTAT TTTAT TTTA
6743125 ATTGTGTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
5 18 0.50
6 14 0.39
7 4 0.11
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:6744082 original size:21 final size:21
Alignment explanation
Indices: 6744058--6744101 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
6744048 AAAAAGTTGA
**
6744058 AAAAAATTTTAAAAAAAAAAG
1 AAAAAATTGGAAAAAAAAAAG
*
6744079 AAAAAATTGGAAAAAAAGAAG
1 AAAAAATTGGAAAAAAAAAAG
6744100 AA
1 AA
6744102 GAAGAAGATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (21 bp):
AAAAAATTGGAAAAAAAAAAG
Found at i:6745177 original size:25 final size:23
Alignment explanation
Indices: 6745136--6745181 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
6745126 CCAATTAGGC
6745136 AATTATTGTTTAGATTTAATTAA
1 AATTATTGTTTAGATTTAATTAA
*
6745159 AATTATCTTTTTAGAATTTAATT
1 AATTAT-TGTTTAG-ATTTAATT
6745182 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (23 bp):
AATTATTGTTTAGATTTAATTAA
Found at i:6748245 original size:30 final size:30
Alignment explanation
Indices: 6748209--6748266 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
6748199 AATACGAAGC
6748209 AATATAATAA-GCAGA-CAAATAATATGCGAA
1 AATATAA-AATGCAGAGCAAATAA-ATGCGAA
6748239 AATATAAAATGCAGATGCAAATAAATGC
1 AATATAAAATGCAGA-GCAAATAAATGC
6748267 AAACATTGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
29 2 0.08
30 12 0.48
31 4 0.16
32 7 0.28
ACGTcount: A:0.55, C:0.10, G:0.14, T:0.21
Consensus pattern (30 bp):
AATATAAAATGCAGAGCAAATAAATGCGAA
Found at i:6748399 original size:29 final size:28
Alignment explanation
Indices: 6748359--6748459 Score: 91
Period size: 28 Copynumber: 3.5 Consensus size: 28
6748349 ATCGAGGTCA
*
6748359 AAAATGGAATTTTGGAAAGTTTATGGGC
1 AAAATGGAATTTTGGAAAGTTGATGGGC
* *
6748387 AAAATGGTAATTTTTGGTGAAA-TCGAT-GTC
1 AAAATGG-AA-TTTT-G-GAAAGTTGATGGGC
6748417 AAAAATGGAATTTTGGAAAGTTCGA-GGGC
1 -AAAATGGAATTTTGGAAAGTT-GATGGGC
6748446 AAAATGGTAATTTT
1 AAAATGG-AATTTT
6748460 TGATGAAATC
Statistics
Matches: 59, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
27 4 0.07
28 16 0.27
29 16 0.27
30 8 0.14
31 11 0.19
32 4 0.07
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.33
Consensus pattern (28 bp):
AAAATGGAATTTTGGAAAGTTGATGGGC
Found at i:6748446 original size:59 final size:59
Alignment explanation
Indices: 6748347--6748519 Score: 267
Period size: 59 Copynumber: 2.9 Consensus size: 59
6748337 AATGTAATTT
* *
6748347 AAATCGAGGTCAAAAATGGAATTTTGGAAAGTT-TATGGGCAAAATGGTAATTTTTGGTG
1 AAATCGAGGTCAAAAATGGAATTTTGGAAAGTTCGA-GGGCAAAATGGTAATTTTTGATG
*
6748406 AAATCGATGTCAAAAATGGAATTTTGGAAAGTTCGAGGGCAAAATGGTAATTTTTGATG
1 AAATCGAGGTCAAAAATGGAATTTTGGAAAGTTCGAGGGCAAAATGGTAATTTTTGATG
* * * *
6748465 AAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTT
1 AAATCGAGGTCAAAAATGGAATTTTGGAAAGTTCGAGGGCAAAATGGTAATTTTT
6748520 AGATAGTCTA
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
59 104 0.99
60 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (59 bp):
AAATCGAGGTCAAAAATGGAATTTTGGAAAGTTCGAGGGCAAAATGGTAATTTTTGATG
Found at i:6748500 original size:29 final size:29
Alignment explanation
Indices: 6748358--6748518 Score: 99
Period size: 29 Copynumber: 5.5 Consensus size: 29
6748348 AATCGAGGTC
**
6748358 AAAAATGG-AATTTTGGAAAGTTTATGGG-
1 AAAAATGGTAATTTTGGAAAG-TTCGGGGT
* **
6748386 CAAAATGGTAATTTTTGGTGAAA--TCGATGT
1 AAAAATGGTAA-TTTT-G-GAAAGTTCGGGGT
6748416 CAAAAATGG-AATTTTGGAAAGTTCGAGGG-
1 -AAAAATGGTAATTTTGGAAAGTTCG-GGGT
*
6748445 CAAAATGGTAATTTTTGATGAAA--TCGGGGTT
1 AAAAATGGTAA-TTTTG--GAAAGTTCGGGG-T
6748476 AAAAATGG-AATTTTGGAAAGTTCGGGGGT
1 AAAAATGGTAATTTTGGAAAGTTC-GGGGT
6748505 -AAAATGGTAATTTT
1 AAAAATGGTAATTTT
6748519 TAGATAGTCT
Statistics
Matches: 104, Mismatches: 10, Indels: 37
0.69 0.07 0.25
Matches are distributed among these distances:
27 8 0.08
28 22 0.21
29 30 0.29
30 21 0.20
31 15 0.14
32 8 0.08
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.32
Consensus pattern (29 bp):
AAAAATGGTAATTTTGGAAAGTTCGGGGT
Found at i:6748768 original size:160 final size:161
Alignment explanation
Indices: 6748588--6748916 Score: 522
Period size: 160 Copynumber: 2.0 Consensus size: 161
6748578 CACAGGCATC
*
6748588 CAAA-AGTCAAAGGACTAATTTAAAAATCTCAAAAAATTCCT-GGGTCAATTTTGTAATTAAGCA
1 CAAACAGTCAAAGGACTAATTTAAAAATCTCAAAAAATT-CTAGGGTCAATCTTGTAATTAAGCA
*
6748651 AAAGTTGATTTGAGGAT-TAATTAAAACAAATTAAACACAACAGGGACTAAATACATAAATAAGC
65 AAAGTTGATTTGAGGATAAAATTAAAACAAATTAAACACAACAGGGACTAAATACA-AAATAAGC
*
6748715 C-AAAAGTGACACGTGGCAGCCTCTGGTGCAGT
129 CAAAAAATGACACGTGGCAGCCTCTGGTGCAGT
*
6748747 CAAACAGTCAAAGGACTAATTTAAAAATCTCAAAAGATTCTAGGGTCAATCTTGTAATTAAGCAA
1 CAAACAGTCAAAGGACTAATTTAAAAATCTCAAAAAATTCTAGGGTCAATCTTGTAATTAAGCAA
* * *
6748812 AAGTTGATTTGAGGATAAAATTAAAACAAATTAAACACAATAGGGACTAATTGCAAAATAAGCCG
66 AAGTTGATTTGAGGATAAAATTAAAACAAATTAAACACAACAGGGACTAAATACAAAATAAGCC-
*
6748877 AAAAAATGACACGTGGTAGCCTCTGGTGCAGT
130 AAAAAATGACACGTGGCAGCCTCTGGTGCAGT
*
6748909 CACACAGT
1 CAAACAGT
6748917 GGAGGGATTA
Statistics
Matches: 156, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
159 6 0.04
160 80 0.51
161 34 0.22
162 36 0.23
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.24
Consensus pattern (161 bp):
CAAACAGTCAAAGGACTAATTTAAAAATCTCAAAAAATTCTAGGGTCAATCTTGTAATTAAGCAA
AAGTTGATTTGAGGATAAAATTAAAACAAATTAAACACAACAGGGACTAAATACAAAATAAGCCA
AAAAATGACACGTGGCAGCCTCTGGTGCAGT
Found at i:6749703 original size:15 final size:15
Alignment explanation
Indices: 6749673--6749716 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
6749663 CCCTTCGTTT
*
6749673 ATTATTATTATTAATA
1 ATTAATATT-TTAATA
6749689 ATTAATATTTTAATA
1 ATTAATATTTTAATA
*
6749704 AATAATATATTTA
1 ATTAATAT-TTTA
6749717 TTATTATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATATTTTAATA
Found at i:6750524 original size:6 final size:6
Alignment explanation
Indices: 6750509--6750590 Score: 80
Period size: 6 Copynumber: 13.8 Consensus size: 6
6750499 TTAAATTTGA
* * *
6750509 TTAAAC TTAAAT TTAAA- GTAAAT TTAAAT AAGTAAAT TTAAAT TTAAA-
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT --TTAAAT TTAAAT TTAAAT
* *
6750557 ATAAAT TTAAAT TTAAAT TTAAA- ATAAAT TTAAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAA
6750591 ACCCATTTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
5 12 0.19
6 45 0.73
8 5 0.08
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.40
Consensus pattern (6 bp):
TTAAAT
Found at i:6750532 original size:11 final size:11
Alignment explanation
Indices: 6750516--6750591 Score: 77
Period size: 11 Copynumber: 7.0 Consensus size: 11
6750506 TGATTAAACT
*
6750516 TAAATTTAAAG
1 TAAATTTAAAA
6750527 TAAATTT-AAA
1 TAAATTTAAAA
* *
6750537 T-AA-GTAAATT
1 TAAATTTAAA-A
6750547 TAAATTTAAAA
1 TAAATTTAAAA
*
6750558 TAAATTTAAATT
1 TAAATTTAAA-A
6750570 TAAATTTAAAA
1 TAAATTTAAAA
6750581 TAAATTTAAAA
1 TAAATTTAAAA
6750592 CCCATTTAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
8 1 0.02
9 4 0.08
10 4 0.08
11 30 0.57
12 14 0.26
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (11 bp):
TAAATTTAAAA
Found at i:6750535 original size:17 final size:17
Alignment explanation
Indices: 6750510--6750573 Score: 89
Period size: 17 Copynumber: 3.9 Consensus size: 17
6750500 TAAATTTGAT
*
6750510 TAAACTTAAATTTAAAG
1 TAAATTTAAATTTAAAG
6750527 TAAATTTAAA--T-AAG
1 TAAATTTAAATTTAAAG
*
6750541 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAG
6750558 TAAATTTAAATTTAAA
1 TAAATTTAAATTTAAA
6750574 TTTAAAATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
14 13 0.31
15 1 0.02
16 1 0.02
17 27 0.64
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (17 bp):
TAAATTTAAATTTAAAG
Found at i:6750543 original size:14 final size:14
Alignment explanation
Indices: 6750524--6750551 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6750514 CTTAAATTTA
6750524 AAGTAAATTTAAAT
1 AAGTAAATTTAAAT
6750538 AAGTAAATTTAAAT
1 AAGTAAATTTAAAT
6750552 TTAAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AAGTAAATTTAAAT
Found at i:6750552 original size:31 final size:31
Alignment explanation
Indices: 6750510--6750568 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
6750500 TAAATTTGAT
*
6750510 TAAACTTAAATTTAAAGTAAATTTAAATAAG
1 TAAACTTAAATTTAAAATAAATTTAAATAAG
*
6750541 TAAATTTAAATTTAAAATAAATTTAAAT
1 TAAACTTAAATTTAAAATAAATTTAAAT
6750569 TTAAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (31 bp):
TAAACTTAAATTTAAAATAAATTTAAATAAG
Found at i:6750584 original size:17 final size:17
Alignment explanation
Indices: 6750510--6750591 Score: 82
Period size: 17 Copynumber: 5.0 Consensus size: 17
6750500 TAAATTTGAT
* *
6750510 TAAACTTAAATTTAAAG
1 TAAATTTAAATTTAAAA
*
6750527 TAAATTTAAA--T-AAG
1 TAAATTTAAATTTAAAA
6750541 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
*
6750558 TAAATTTAAATTTAAATT
1 TAAATTTAAATTTAAA-A
*
6750576 TAAA-ATAAATTTAAAA
1 TAAATTTAAATTTAAAA
6750592 CCCATTTAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
14 13 0.23
15 1 0.02
16 1 0.02
17 37 0.66
18 4 0.07
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.39
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:6751129 original size:20 final size:19
Alignment explanation
Indices: 6751088--6751164 Score: 79
Period size: 19 Copynumber: 4.1 Consensus size: 19
6751078 TTGATCTCTC
*
6751088 TTAAAAA-AA-TTAAAAAA
1 TTAAAAATAATTTTAAAAA
*
6751105 ATAAAAATAATTTTCAAAAA
1 TTAAAAATAATTTT-AAAAA
*
6751125 TTAAAAATAATTTTTAAAA
1 TTAAAAATAATTTTAAAAA
*
6751144 TTCAAAAT-ATTTATAAAAA
1 TTAAAAATAATTT-TAAAAA
6751163 TT
1 TT
6751165 CTAAAATTTG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
17 6 0.12
18 6 0.12
19 20 0.40
20 18 0.36
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (19 bp):
TTAAAAATAATTTTAAAAA
Found at i:6751165 original size:19 final size:19
Alignment explanation
Indices: 6751108--6751171 Score: 76
Period size: 19 Copynumber: 3.3 Consensus size: 19
6751098 TAAAAAAATA
*
6751108 AAAATAATTTTCAAAAATTA
1 AAAATAATTTT-AAAAATTC
*
6751128 AAAATAATTTTTAAAATTC
1 AAAATAATTTTAAAAATTC
6751147 AAAAT-ATTTATAAAAATTC
1 AAAATAATTT-TAAAAATTC
6751166 TAAAAT
1 -AAAAT
6751172 TTGTACTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
18 4 0.10
19 19 0.49
20 16 0.41
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATAATTTTAAAAATTC
Found at i:6756221 original size:25 final size:23
Alignment explanation
Indices: 6756180--6756225 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
6756170 CCAATTAGGG
6756180 AATTATTATTTAGATTTAATTCA
1 AATTATTATTTAGATTTAATTCA
*
6756203 AATTATCTTTTTAGAATTTAATT
1 AATTAT-TATTTAG-ATTTAATT
6756226 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (23 bp):
AATTATTATTTAGATTTAATTCA
Found at i:6757206 original size:20 final size:20
Alignment explanation
Indices: 6757169--6757206 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
6757159 AATTTTAAAA
*
6757169 ATAAAAAATTATTTAAAAGT
1 ATAAAAAATTATTAAAAAGT
6757189 ATAAAAAA-TATGTAAAAA
1 ATAAAAAATTAT-TAAAAA
6757207 TATTTTAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
ATAAAAAATTATTAAAAAGT
Found at i:6761311 original size:30 final size:30
Alignment explanation
Indices: 6761191--6761326 Score: 116
Period size: 30 Copynumber: 4.5 Consensus size: 30
6761181 AAGTTTAGGA
* * * *
6761191 GTCAAAATGTGATTTTTAGGAAAGTTTAGGG
1 GTCAAAATGAGA-TTTTAGAAAAATTTAAGG
*
6761222 GTTAAAATGTA-ATTTT-GAAAAATTTTAAGG
1 GTCAAAATG-AGATTTTAGAAAAA-TTTAAGG
* * * *
6761252 GTCAAAATAAAATTTTGGAAAAGTTTAAGG
1 GTCAAAATGAGATTTTAGAAAAATTTAAGG
*
6761282 GTCAAAATGAGATTTTAGAAAAATATAA-G
1 GTCAAAATGAGATTTTAGAAAAATTTAAGG
* *
6761311 GTTAAAATGTGATTTT
1 GTCAAAATGAGATTTT
6761327 GGGTAAGTTT
Statistics
Matches: 86, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
29 20 0.23
30 52 0.60
31 14 0.16
ACGTcount: A:0.42, C:0.02, G:0.21, T:0.35
Consensus pattern (30 bp):
GTCAAAATGAGATTTTAGAAAAATTTAAGG
Found at i:6763417 original size:48 final size:48
Alignment explanation
Indices: 6763354--6763524 Score: 263
Period size: 48 Copynumber: 3.6 Consensus size: 48
6763344 GATTTGGTCT
* * * * * *
6763354 ACTTCTCTTTATCTCATCAGTAAGATGATCGCCTCATTG-TTTCAATCC
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAA-CC
*
6763402 ACTTCTCTGTCTCTCATCAGGAAGATGACCGCTTTATTGCTTTGAACC
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAACC
6763450 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAACC
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAACC
6763498 ACTTCTCTGTATCTCATCAGGAAGATG
1 ACTTCTCTGTATCTCATCAGGAAGATG
6763525 GGGTTTGAAG
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
48 109 0.96
49 5 0.04
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (48 bp):
ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAACC
Found at i:6763685 original size:85 final size:84
Alignment explanation
Indices: 6763564--6763729 Score: 217
Period size: 85 Copynumber: 2.0 Consensus size: 84
6763554 CACTTCATTG
* * * *
6763564 ATTTGGTCTACTTTTCTGTTTTTATCAGGAAGATGACCACCTCATTGTTTCAATCCACTTTTCTG
1 ATTTGGTCTACTTTTCTGTTCTTATCAGGAAGATGACCACCTCAGTGCTTCAACCCACTTTTCTG
*
6763629 TATCTTATCAAGAAGACAA
66 TATCTCATCAAGAAGACAA
** * * *
6763648 ATTTGGTCTACTTCTT-TGTATCTTATCAGGAAGATGACTGCTTTAGTGCTTGAACCCACTTTTC
1 ATTTGGTCTACTT-TTCTGT-TCTTATCAGGAAGATGACCACCTCAGTGCTTCAACCCACTTTTC
6763712 TGTATCTCATCAAGAAGA
64 TGTATCTCATCAAGAAGA
6763730 TGGGGTTTGA
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 16 0.23
85 54 0.77
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (84 bp):
ATTTGGTCTACTTTTCTGTTCTTATCAGGAAGATGACCACCTCAGTGCTTCAACCCACTTTTCTG
TATCTCATCAAGAAGACAA
Found at i:6763816 original size:207 final size:207
Alignment explanation
Indices: 6763450--6764108 Score: 853
Period size: 207 Copynumber: 3.2 Consensus size: 207
6763440 GCTTTGAACC
*
6763450 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAA-CCACTTCTCTGTATCTCA
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAACCCACTTATCTGTATCTCA
* * *
6763514 TCAGGAAGATGGGGTTTGAAGTCTCATTTGTATTGAGCTTCACTTCATTGATTTGGTCTACTTTT
66 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGTTTCACTTCATTGATTTGGTCTACTTTT
* * * *
6763579 CTGTTTTTATCAGGAAGATGACCACCTCATTGTTTCAATCCACTTTTCTGTATCTTATCAAGAAG
131 CTGTTCTAATCAGGAAGATGACCACCTCATTGTTT-AATCCACTTCTCTGTATCTCATCAAGAAG
**
6763644 ACAAATTTGGTCT
195 ACGGATTTGGTCT
* * * * *
6763657 ACTTCTTTGTATCTTATCAGGAAGATGACTGCTTTAGTGC-TTGAACCCACTTTTCTGTATCTCA
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAACCCACTTATCTGTATCTCA
6763721 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGTTTCACTTCATTGATTTGGTCTACTTCT
66 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGTTTCACTTCATTGATTTGGTCTACTT-T
* * * * * *
6763786 T-TGTTCTCATCAGGACGATGGCCGCCTCATTGATTTAATCCACTTCTCTATATCTCATCAGGAA
130 TCTGTTCTAATCAGGAAGATGACCACCTCATTG-TTTAATCCACTTCTCTGTATCTCATCAAGAA
* *
6763850 GGCGGATTTGGTCG
194 GACGGATTTGGTCT
* * *
6763864 GCTTCTCTGTATCTCATCAGGAAGGTGACCGCTTTATTGCTTTG-ACCCACTTATCCGTATCTCA
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAACCCACTTATCTGTATCTCA
* * ** *
6763928 TCAAGAAGATGGGGTTTGAAGTCTCATTCATATTAAGCTTT-GTTTCATTTATTTGGTCTACTTT
66 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAG-TTTCACTTCATTGATTTGGTCTACTTT
* * * * * * *
6763992 TCTGTTCTAATCAAGAAGATGACCTCTTCATTATTTTATTTCACTTCTCTGTATCTCATAAAGAA
130 TCTGTTCTAATCAGGAAGATGACCACCTCATT-GTTTAATCCACTTCTCTGTATCTCATCAAGAA
*
6764057 GACGGATTTGGTTT
194 GACGGATTTGGTCT
* * *
6764071 ACTTCTCTGCATCTCGTCAGGAAGATGACCAC-TTATTG
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTG
6764109 GTTCGAATGA
Statistics
Matches: 391, Mismatches: 54, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
206 13 0.03
207 367 0.94
208 11 0.03
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (207 bp):
ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAACCCACTTATCTGTATCTCA
TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGTTTCACTTCATTGATTTGGTCTACTTTT
CTGTTCTAATCAGGAAGATGACCACCTCATTGTTTAATCCACTTCTCTGTATCTCATCAAGAAGA
CGGATTTGGTCT
Found at i:6763858 original size:37 final size:37
Alignment explanation
Indices: 6763817--6763888 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
6763807 CCGCCTCATT
6763817 GATTTAATCCACTTCTCTATATCTCATCAGGAAGGCG
1 GATTTAATCCACTTCTCTATATCTCATCAGGAAGGCG
** ** *
6763854 GATTTGGTCGGCTTCTCTGTATCTCATCAGGAAGG
1 GATTTAATCCACTTCTCTATATCTCATCAGGAAGG
6763889 TGACCGCTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (37 bp):
GATTTAATCCACTTCTCTATATCTCATCAGGAAGGCG
Found at i:6763915 original size:85 final size:84
Alignment explanation
Indices: 6763770--6763935 Score: 188
Period size: 85 Copynumber: 2.0 Consensus size: 84
6763760 TCACTTCATT
* * * * * * *
6763770 GATTTGGTCTACTTCTTTGTTCTCATCAGGACGATGGCCGCCTCATTGATTTAATCCACTTCTCT
1 GATTTGGTCGACTTCTCTGTTCTCATCAGGAAGATGACCGCCTCATTGATTTAACCCACTTATCC
*
6763835 ATATCTCATCAGGAAGGCG
66 ATATCTCATCAAGAAGGCG
* * * * * *
6763854 GATTTGGTCGGCTTCTCTGTATCTCATCAGGAAGGTGACCGCTTTATTGCTTTGACCCACTTATC
1 GATTTGGTCGACTTCTCTGT-TCTCATCAGGAAGATGACCGCCTCATTGATTTAACCCACTTATC
*
6763919 CGTATCTCATCAAGAAG
65 CATATCTCATCAAGAAG
6763936 ATGGGGTTTG
Statistics
Matches: 66, Mismatches: 15, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
84 17 0.26
85 49 0.74
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (84 bp):
GATTTGGTCGACTTCTCTGTTCTCATCAGGAAGATGACCGCCTCATTGATTTAACCCACTTATCC
ATATCTCATCAAGAAGGCG
Found at i:6764012 original size:414 final size:419
Alignment explanation
Indices: 6763223--6764100 Score: 1056
Period size: 414 Copynumber: 2.1 Consensus size: 419
6763213 GCTTCATCTC
* * *
6763223 TTGGTCTACTTCTCTGTATCTCATCAGGAAGGTGACCGCTTTATTACTTTGACTCACTTCTCTGT
1 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTAGTACTTTGACCCACTTCTCTGT
* * * * *
6763288 ATCTCATTAAGGAGATAGGATTTTGAAGTTTCACTCACATTGAGCTTTGCCTCTTTGATTTGGTC
66 ATCTCATCAAGAAGATAGGAGTTTGAAGTCTCACTCACATTGAGCTTTGCCTCATTGATTTGGTC
* * * *
6763353 TACTTCTCTTTATCTCATCAGTAAGATGATCGCCTCATTGTTTCAATCCACTTCTCTGTCTCTCA
131 TACTTCTCTTTATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCACTTCTCTATATCTCA
*
6763418 TCAGGAAGATGACCGCTTTATTGCTTTGAACCACTTCTCTGTATCTCATCAGGAAGATGACCGCT
196 TCAGGAAGA-GA-CG------TGATTTGAACCACTTCTCTGTATCTCATCAGGAAGATGACCGCT
* * * **
6763483 TTATTGCTTTGAACCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTTGTATT
253 TTATTGCTTTGAACCACTTATCCGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATT
* * * * *
6763548 GAGCTTCACTTCATTGATTTGGTCTACTTTTCTGTTTTTATCAGGAAGATGACCACCTCATTGTT
318 AAGCTTCACTTCATTGATTTGGTCTACTTTTCTGTTCTAATCAAGAAGATGACCACCTCATTATT
* * *
6763613 TCAATCCACTTTTCTGTATCTTATCAAGAAGACAAAT
383 TCAATCCACTTCTCTGTATCTCATAAAGAAGACAAAT
* * * * *
6763650 TTGGTCTACTTCTTTGTATCTTATCAGGAAGATGACTGCTTTAGTGC-TTGAACCCACTTTTCTG
1 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTAGTACTTTG-ACCCACTTCTCTG
* * **
6763714 TATCTCATCAAGAAGAT-GGGGTTTGAAGTCTCATTCGTATTGAG-TTT-CACTTCATTGATTTG
65 TATCTCATCAAGAAGATAGGAGTTTGAAGTCTCACTCACATTGAGCTTTGC-C-TCATTGATTTG
* *
6763776 GTCTACTTCT-TTGT-TCTCATCAGGACGATGGCCGCCTCATTGATTT-AATCCACTTCTCTATA
128 GTCTACTTCTCTT-TATCTCATCAGGAAGATGACCGCCTCATTG-TTTCAATCCACTTCTCTATA
** ** *
6763838 TCTCATCAGGAAG-G-CG-GATTTGGTCGGCTTCTCTGTATCTCATCAGGAAGGTGACCGCTTTA
191 TCTCATCAGGAAGAGACGTGATTTGAACCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTA
*
6763900 TTGCTTTGACCCACTTATCCGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTAAG
256 TTGCTTTGAACCACTTATCCGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTAAG
*** * * * *
6763965 CTTTGTTTCATTTATTTGGTCTACTTTTCTGTTCTAATCAAGAAGATGACCTCTTCATTATTTTA
321 CTTCACTTCATTGATTTGGTCTACTTTTCTGTTCTAATCAAGAAGATGACCACCTCATTATTTCA
* * **
6764030 TTTCACTTCTCTGTATCTCATAAAGAAGACGGAT
386 ATCCACTTCTCTGTATCTCATAAAGAAGACAAAT
* * *
6764064 TTGGTTTACTTCTCTGCATCTCGTCAGGAAGATGACC
1 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACC
6764101 ACTTATTGGT
Statistics
Matches: 386, Mismatches: 60, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
414 210 0.54
421 2 0.01
423 1 0.00
424 1 0.00
425 57 0.15
426 48 0.12
427 67 0.17
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.39
Consensus pattern (419 bp):
TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTAGTACTTTGACCCACTTCTCTGT
ATCTCATCAAGAAGATAGGAGTTTGAAGTCTCACTCACATTGAGCTTTGCCTCATTGATTTGGTC
TACTTCTCTTTATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCACTTCTCTATATCTCA
TCAGGAAGAGACGTGATTTGAACCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCT
TTGAACCACTTATCCGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTAAGCTTCA
CTTCATTGATTTGGTCTACTTTTCTGTTCTAATCAAGAAGATGACCACCTCATTATTTCAATCCA
CTTCTCTGTATCTCATAAAGAAGACAAAT
Found at i:6764280 original size:81 final size:81
Alignment explanation
Indices: 6764122--6764377 Score: 241
Period size: 81 Copynumber: 3.1 Consensus size: 81
6764112 CGAATGACTG
* * * * * *
6764122 CAATCTACCCCATGATTGGGGTAAGAGATTAGATGATGACAGTAATTTACCTCGTAATCGGGGTA
1 CAATCTACCCCATGATTGGGGTAAGAGATTAGATGA-GACTGTAATCTGCCCCATGATC-GGGTA
6764187 AGAGATT-G-GATGGCTA
64 AGAGATTGGAGATGGCTA
* * *
6764203 CAATTTGCCCCATGATTGGGGTAAGAGATTAGATG-G-CTGCAATCTGCCCCATGATCGGTGTAA
1 CAATCTACCCCATGATTGGGGTAAGAGATTAGATGAGACTGTAATCTGCCCCATGATCGG-GTAA
*
6764266 GAGATTGGATGATGGCTG
65 GAGATTGGA-GATGGCTA
* * * * * *
6764284 TAATCTACCCTATGATCGAGGTAAGAGATTGGATGACGACTGTAATCTGCCCCATGGTCGAGGTA
1 CAATCTACCCCATGATTGGGGTAAGAGATTAGATGA-GACTGTAATCTGCCCCATGATCG-GGTA
* * ** *
6764349 AAAGATTGGAAATGTTTT
64 AGAGATTGGAGATGGCTA
6764367 CAATCTACCCC
1 CAATCTACCCC
6764378 TCTTGATTAG
Statistics
Matches: 141, Mismatches: 26, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
77 2 0.01
78 23 0.16
79 2 0.01
81 68 0.48
83 14 0.10
84 31 0.22
85 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (81 bp):
CAATCTACCCCATGATTGGGGTAAGAGATTAGATGAGACTGTAATCTGCCCCATGATCGGGTAAG
AGATTGGAGATGGCTA
Done.