Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 30 of 135
Found at i:7860310 original size:23 final size:22
Alignment explanation
Indices: 7860280--7860448 Score: 135
Period size: 23 Copynumber: 7.4 Consensus size: 22
7860270 ACACTAGCGC
* * *
7860280 GCTCTCTGTTTAGCACGTCTCGT
1 GCTCTCTGATTAGCAC-TTTTGT
7860303 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGATTAGCACTTT-TGT
*
7860326 GCTCTTTGATTAGCACTTTGTGT
1 GCTCTCTGATTAGCACTTT-TGT
*
7860349 GCTCTCTGATTAGTACTTTGTGT
1 GCTCTCTGATTAGCACTTT-TGT
* * *
7860372 ACTCTCTGTTTAGCACTGTGTGT
1 GCTCTCTGATTAGCACT-TTTGT
*
7860395 GCTCTCTG-TTGCCCAGCACTTATGT
1 GCTCTCTGATT----AGCACTTTTGT
* *
7860420 GCTCTCTG-TTAGTACTTTGGT
1 GCTCTCTGATTAGCACTTTTGT
*
7860441 ACTCTCTG
1 GCTCTCTG
7860449 CTTGTTCCGT
Statistics
Matches: 124, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
21 15 0.12
22 4 0.03
23 84 0.68
24 1 0.01
25 14 0.11
26 6 0.05
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (22 bp):
GCTCTCTGATTAGCACTTTTGT
Found at i:7860351 original size:46 final size:46
Alignment explanation
Indices: 7860281--7860402 Score: 165
Period size: 46 Copynumber: 2.7 Consensus size: 46
7860271 CACTAGCGCG
* * *
7860281 CTCTCTGTTTAGCAC-GTCTCGTGCTCTCTGATTAGCACTTTGTGTG
1 CTCTCTGATTAGCACTGTGT-GTGCTCTCTGATTAGCACTTTGTGTA
* * *
7860327 CTCTTTGATTAGCACTTTGTGTGCTCTCTGATTAGTACTTTGTGTA
1 CTCTCTGATTAGCACTGTGTGTGCTCTCTGATTAGCACTTTGTGTA
*
7860373 CTCTCTGTTTAGCACTGTGTGTGCTCTCTG
1 CTCTCTGATTAGCACTGTGTGTGCTCTCTG
7860403 TTGCCCAGCA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
46 64 0.97
47 2 0.03
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.44
Consensus pattern (46 bp):
CTCTCTGATTAGCACTGTGTGTGCTCTCTGATTAGCACTTTGTGTA
Found at i:7860394 original size:69 final size:66
Alignment explanation
Indices: 7860304--7860448 Score: 184
Period size: 69 Copynumber: 2.1 Consensus size: 66
7860294 ACGTCTCGTG
* * *
7860304 CTCTCTGATTAGCACTTTGTGTGCTCTTTGATT-AGCACTTTGTGTGCTCTCTGATTAGTACTTT
1 CTCTCTGATTAGCACTGTGTGTGCTCTCTG-TTCAGCAC-TTATGTGCTCTCTG-TTAGTACTTT
7860368 GTGTA
63 G-GTA
*
7860373 CTCTCTGTTTAGCACTGTGTGTGCTCTCTGTTGCCCAGCACTTATGTGCTCTCTGTTAGTACTTT
1 CTCTCTGATTAGCACTGTGTGTGCTCTCTGTT---CAGCACTTATGTGCTCTCTGTTAGTACTTT
7860438 GGTA
63 GGTA
7860442 CTCTCTG
1 CTCTCTG
7860449 CTTGTTCCGT
Statistics
Matches: 68, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
68 2 0.03
69 37 0.54
70 11 0.16
71 13 0.19
72 5 0.07
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (66 bp):
CTCTCTGATTAGCACTGTGTGTGCTCTCTGTTCAGCACTTATGTGCTCTCTGTTAGTACTTTGGT
A
Found at i:7860702 original size:5 final size:5
Alignment explanation
Indices: 7860692--7860717 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7860682 AAGGACCTCT
7860692 CATCA CATCA CATCA CATCA CATCA C
1 CATCA CATCA CATCA CATCA CATCA C
7860718 TATTGGAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.42, G:0.00, T:0.19
Consensus pattern (5 bp):
CATCA
Found at i:7864665 original size:59 final size:59
Alignment explanation
Indices: 7864469--7864666 Score: 161
Period size: 59 Copynumber: 3.4 Consensus size: 59
7864459 GGGTTTTTTA
* * * *
7864469 GGGGTAAAATGGTAATTTTT-GTGAAATCGGGGTTAAAAATGGAATTT-GGAAAGTTTG
1 GGGGTAAAATGATAATTTTTGGCGAAATTGGGGTTAAAAATGGAATTTAGGAAAGTTCG
* * * * * ** * *
7864526 GGGAATAAAGT-AGTAAATTTTGGCAAAAATAAGGTCAAAAATGAAATTTTA-GAAAGTTCG
1 GGG-GTAAAATGA-TAATTTTTGGCGAAATTGGGGTTAAAAATGGAA-TTTAGGAAAGTTCG
** * * * * *
7864586 AAGGTAAAACGGTAAGTTTTGGCGAAATTGGGGTTAAAAATGGGATTTAGGGAAGTTCG
1 GGGGTAAAATGATAATTTTTGGCGAAATTGGGGTTAAAAATGGAATTTAGGAAAGTTCG
7864645 GGGGTAAAATGATAATTTTTGG
1 GGGGTAAAATGATAATTTTTGG
7864667 AAGTTTTAGG
Statistics
Matches: 101, Mismatches: 33, Indels: 12
0.69 0.23 0.08
Matches are distributed among these distances:
57 3 0.03
58 16 0.16
59 70 0.69
60 12 0.12
ACGTcount: A:0.37, C:0.04, G:0.29, T:0.30
Consensus pattern (59 bp):
GGGGTAAAATGATAATTTTTGGCGAAATTGGGGTTAAAAATGGAATTTAGGAAAGTTCG
Found at i:7864701 original size:30 final size:30
Alignment explanation
Indices: 7864646--7864995 Score: 435
Period size: 30 Copynumber: 11.7 Consensus size: 30
7864636 GGAAGTTCGG
7864646 GGGT-AAAATGATAATTTTTGG--AAGTTTTA
1 GGGTCAAAATG-TAA-TTTTGGAAAAGTTTTA
* **
7864675 GGGTCAAAATATAATTTTGGAAAAGTTTCG
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTA
**
7864705 GGGTCAAAATGTAATTTTGGAAAAGTTTCG
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTA
*
7864735 GGGTCAAAATGTAATTGTGGAAAAGTTTT-
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTA
* * * *
7864764 GGGTCGAAATATGATTTTGGAAAAG-TTTC
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTA
* * *
7864793 GAGGTCAAAATATAATTTTGAAAAAGTTTTG
1 G-GGTCAAAATGTAATTTTGGAAAAGTTTTA
*
7864824 GGGTCAAAATGTAATTTTGGAAAAGTTTTT
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTA
*
7864854 GGGTCAAAATGTAATTTTGGAAAAG-TTTC
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTA
7864883 GAGGTCAAAATGTAATTTTGGAAAAGTTTTA
1 G-GGTCAAAATGTAATTTTGGAAAAGTTTTA
*
7864914 GGGTCAAAATATAATTTTGGAAAAGTTTTA
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTA
* *
7864944 GGGTCAAAATGTAATTTTGGTAAAG-TTTC
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTA
7864973 GAGGTCAAAATGTAATTTCTGGA
1 G-GGTCAAAATGTAATTT-TGGA
7864996 CAATTTAGGG
Statistics
Matches: 287, Mismatches: 24, Indels: 18
0.87 0.07 0.05
Matches are distributed among these distances:
28 9 0.03
29 37 0.13
30 230 0.80
31 11 0.04
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (30 bp):
GGGTCAAAATGTAATTTTGGAAAAGTTTTA
Found at i:7864847 original size:15 final size:15
Alignment explanation
Indices: 7864829--7864877 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
7864819 TTTTGGGGTC
7864829 AAAATGTAATTTTGG
1 AAAATGTAATTTTGG
7864844 AAAA-GT--TTTTGGG
1 AAAATGTAATTTT-GG
7864857 TCAAAATGTAATTTTGG
1 --AAAATGTAATTTTGG
7864874 AAAA
1 AAAA
7864878 GTTTCGAGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 12
0.70 0.00 0.30
Matches are distributed among these distances:
12 4 0.14
13 2 0.07
14 2 0.07
15 12 0.43
16 2 0.07
17 2 0.07
18 4 0.14
ACGTcount: A:0.41, C:0.02, G:0.20, T:0.37
Consensus pattern (15 bp):
AAAATGTAATTTTGG
Found at i:7864901 original size:90 final size:90
Alignment explanation
Indices: 7864645--7864995 Score: 530
Period size: 90 Copynumber: 3.9 Consensus size: 90
7864635 GGGAAGTTCG
*
7864645 GGGGT-AAAATGATAATTTTTGG--AAGTTTTAGGGTCAAAATATAATTTTGGAAAAGTTTCGGG
1 GGGGTCAAAATG-TAA-TTTTGGAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGTTTCGAG
*
7864707 GTCAAAATGTAATTTTGGAAAAGTTTC
64 GTCAAAATGTAATTTTGGAAAAGTTTT
* * *
7864734 GGGGTCAAAATGTAATTGTGGAAAAGTTTT-GGGTCGAAATATGATTTTGGAAAAGTTTCGAGGT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGTTTCGAGGT
* *
7864798 CAAAATATAATTTTGAAAAAGTTTT
66 CAAAATGTAATTTTGGAAAAGTTTT
* *
7864823 GGGGTCAAAATGTAATTTTGGAAAAGTTTTTGGGTCAAAATGTAATTTTGGAAAAGTTTCGAGGT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGTTTCGAGGT
7864888 CAAAATGTAATTTTGGAAAAGTTTT
66 CAAAATGTAATTTTGGAAAAGTTTT
* * * *
7864913 AGGGTCAAAATATAATTTTGGAAAAGTTTTAGGGTCAAAATGTAATTTTGGTAAAGTTTCGAGGT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGTTTCGAGGT
7864978 CAAAATGTAATTTCTGGA
66 CAAAATGTAATTT-TGGA
7864996 CAATTTAGGG
Statistics
Matches: 240, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
88 5 0.02
89 90 0.38
90 141 0.59
91 4 0.02
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (90 bp):
GGGGTCAAAATGTAATTTTGGAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAGTTTCGAGGT
CAAAATGTAATTTTGGAAAAGTTTT
Found at i:7865889 original size:19 final size:20
Alignment explanation
Indices: 7865865--7865903 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
7865855 GGAAGTTTGC
*
7865865 AAAATATTTTTTTTA-TTTT
1 AAAATATTTATTTTAGTTTT
7865884 AAAATATTTATTTTAGTTTT
1 AAAATATTTATTTTAGTTTT
7865904 TTTTAATCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (20 bp):
AAAATATTTATTTTAGTTTT
Found at i:7866084 original size:16 final size:16
Alignment explanation
Indices: 7866060--7866094 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7866050 TTATTTTTTA
* *
7866060 ATTATTATTTATTATT
1 ATTAATATTTATTAGT
7866076 ATTAATATTTATTAGT
1 ATTAATATTTATTAGT
7866092 ATT
1 ATT
7866095 GCATTTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (16 bp):
ATTAATATTTATTAGT
Found at i:7866906 original size:23 final size:23
Alignment explanation
Indices: 7866868--7866920 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 23
7866858 ACATTGAACT
*
7866868 TTTAATTAATTTTTTTAATGTTAAA
1 TTTAA-TATTTTTTTTAAT-TTAAA
*
7866893 TTTAATATTTTTTTTTATTTAAA
1 TTTAATATTTTTTTTAATTTAAA
7866916 TTTAA
1 TTTAA
7866921 ATTCAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 10 0.38
24 11 0.42
25 5 0.19
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
TTTAATATTTTTTTTAATTTAAA
Found at i:7866920 original size:6 final size:6
Alignment explanation
Indices: 7866909--7866985 Score: 72
Period size: 6 Copynumber: 13.2 Consensus size: 6
7866899 ATTTTTTTTT
* *
7866909 ATTTAA ATTTAA ATTCAA A-GTAA ATTTAA ATAATTAA ATTTAA ATTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA AT--TTAA ATTTAA ATTTAA
**
7866958 A-ACAA ATTTAA ATTTAA A--TAA ATTTAA A
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA A
7866986 ATCAATTTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
4 4 0.07
5 6 0.11
6 41 0.72
8 6 0.11
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (6 bp):
ATTTAA
Found at i:7866932 original size:17 final size:16
Alignment explanation
Indices: 7866912--7866990 Score: 81
Period size: 17 Copynumber: 4.9 Consensus size: 16
7866902 TTTTTTTATT
7866912 TAAATTTAAATTCAAA
1 TAAATTTAAATTCAAA
*
7866928 GTAAATTTAAA-T-AAT
1 -TAAATTTAAATTCAAA
*
7866943 TAAATTTAAATTTAAAA
1 TAAATTTAAA-TTCAAA
* *
7866960 CAAATTTAAATTTAAA
1 TAAATTTAAATTCAAA
*
7866976 TAAATTTAAAATCAA
1 TAAATTTAAATTCAA
7866991 TTTAACTCTA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
14 10 0.19
15 2 0.04
16 19 0.37
17 21 0.40
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (16 bp):
TAAATTTAAATTCAAA
Found at i:7866981 original size:27 final size:30
Alignment explanation
Indices: 7866911--7866995 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 30
7866901 TTTTTTTTAT
* *
7866911 TTAAATTTAAATTCAAAGT-AAATTTAAATAA
1 TTAAA-TTAAATTTAAAATCAAATTTAAAT-A
7866942 TTAAATTTAAATTTAAAA-CAAATTTAAAT-
1 TTAAA-TTAAATTTAAAATCAAATTTAAATA
7866971 TTAAA-TAAATTTAAAATC-AATTTAA
1 TTAAATTAAATTTAAAATCAAATTTAA
7866996 CTCTAAATTA
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
27 18 0.36
28 1 0.02
29 5 0.10
31 26 0.52
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (30 bp):
TTAAATTAAATTTAAAATCAAATTTAAATA
Found at i:7867002 original size:27 final size:27
Alignment explanation
Indices: 7866949--7867003 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
7866939 TAATTAAATT
*
7866949 TAAATTTAAAACAAATTTAAATTTAAA
1 TAAATTTAAAACAAATTTAAATCTAAA
*
7866976 TAAATTTAAAATC-AATTTAACTCTAAA
1 TAAATTTAAAA-CAAATTTAAATCTAAA
7867003 T
1 T
7867004 TAAACGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (27 bp):
TAAATTTAAAACAAATTTAAATCTAAA
Found at i:7867422 original size:31 final size:31
Alignment explanation
Indices: 7867384--7867972 Score: 182
Period size: 37 Copynumber: 17.4 Consensus size: 31
7867374 TATCCAACTC
*
7867384 TACTTCAATTTTAAGGGGATGATGTTGCCCT
1 TACTTCAATTTCAAGGGGATGATGTTGCCCT
** *
7867415 TACTTCAATTTCAGAGATGAAGACGTGCTAT-CCACT
1 TACTTCAATTTCA-AGGGGATGA--TG-T-TGCC-CT
* *
7867451 CTACTTCAATTTCAAGGGGATGACGTTGCTCT
1 -TACTTCAATTTCAAGGGGATGATGTTGCCCT
* *
7867483 TACTTCAATTTC--GGAGATAAAGACGTGTTATCCACT
1 TACTTCAATTTCAAGGGGAT---GA--TGTT-GCC-CT
* *
7867519 CTACTTCAATTTCAAGGGGATGACGTTGCTCT
1 -TACTTCAATTTCAAGGGGATGATGTTGCCCT
** * *
7867551 TACTTCAATTTCAGAGATGAAGACGTGTTATCCACT
1 TACTTCAATTTCA-AGGGGATGA--TGTT-GCC-CT
* *** * *
7867587 CTACTTCAATTTCAAGCGGATTGGCATTACTCT
1 -TACTTCAATTTCAAGGGGA-TGATGTTGCCCT
** *
7867620 TACTTCAATTTCAGAGATGAAGACGTGCTAT-CCACT
1 TACTTCAATTTCA-AGGGGATGA--TG-T-TGCC-CT
* *
7867656 CTACTTCAATTTCAAGGGGATGACGTTGCTCT
1 -TACTTCAATTTCAAGGGGATGATGTTGCCCT
** * *
7867688 TACTTCAATTTCAGAGATGAAGACGTGTTATCCACT
1 TACTTCAATTTCA-AGGGGATGA--TGTT-GCC-CT
* *** *
7867724 CTACTTCAATTTCAAGCGGATTGGCATTGCTCT
1 -TACTTCAATTTCAAGGGGA-TGATGTTGCCCT
** * *
7867757 TACTTCAATTTCAGAGATGAAGACGTGTTATCCACT
1 TACTTCAATTTCA-AGGGGATGA--TGTT-GCC-CT
* *
7867793 CTACTTCAATTTTAAGGGGATGACGTTGCCCT
1 -TACTTCAATTTCAAGGGGATGATGTTGCCCT
** *
7867825 TACTTCAATTTCAGAGATGAAGACGTGCTAT-CCACT
1 TACTTCAATTTCA-AGGGGATGA--TG-T-TGCC-CT
* *
7867861 CTACTTCAATTTCAAGGGGATGACGTTGCTCT
1 -TACTTCAATTTCAAGGGGATGATGTTGCCCT
** * *
7867893 TACTTCAATTTCAGAGATGAAGACGTGTTATCCACT
1 TACTTCAATTTCA-AGGGGATGA--TGTT-GCC-CT
* *
7867929 CTACTTCAATTTCAA-GGGATGACGTTGCTCT
1 -TACTTCAATTTCAAGGGGATGATGTTGCCCT
7867960 TACTTCAATTTCA
1 TACTTCAATTTCA
7867973 GAGATGAAGA
Statistics
Matches: 405, Mismatches: 93, Indels: 121
0.65 0.15 0.20
Matches are distributed among these distances:
29 5 0.01
30 13 0.03
31 77 0.19
32 74 0.18
33 24 0.06
34 28 0.07
35 21 0.05
36 54 0.13
37 104 0.26
39 5 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (31 bp):
TACTTCAATTTCAAGGGGATGATGTTGCCCT
Found at i:7867473 original size:68 final size:68
Alignment explanation
Indices: 7867339--7868153 Score: 1326
Period size: 68 Copynumber: 11.9 Consensus size: 68
7867329 GGAAATAATC
* * * *
7867339 TTGCTTTTACTTCAATTTCAGAGATAAAGGCGTGTTATCCAACTCTACTTCAATTTTAAGGGGAT
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGGGGAT
*
7867404 GATG
65 GACG
* *
7867408 TTGCCCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
7867473 ACG
66 ACG
* *
7867476 TTGCTCTTACTTCAATTTCGGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
7867541 ACG
66 ACG
*
7867544 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGATT
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGA-T
* *
7867609 GGCA
65 GACG
* *
7867613 TTACTCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
7867678 ACG
66 ACG
*
7867681 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGATT
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGA-T
* *
7867746 GGCA
65 GACG
*
7867750 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTTAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
7867815 ACG
66 ACG
* *
7867818 TTGCCCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
7867883 ACG
66 ACG
7867886 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAA-GGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
7867950 ACG
66 ACG
*
7867953 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGATT
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGA-T
* *
7868018 GGCA
65 GACG
*
7868022 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTTAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
7868087 ACG
66 ACG
* * * * *
7868090 TTGCTTTTACTTCAGTTTTAGAGATGAAGACGCGTTATCCACTCTACTTCAATTTCAAGCGGAT
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGAT
7868154 TAGCATTGAT
Statistics
Matches: 694, Mismatches: 48, Indels: 9
0.92 0.06 0.01
Matches are distributed among these distances:
67 67 0.10
68 401 0.58
69 226 0.33
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (68 bp):
TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
ACG
Found at i:7867677 original size:137 final size:137
Alignment explanation
Indices: 7867339--7868166 Score: 1383
Period size: 137 Copynumber: 6.1 Consensus size: 137
7867329 GGAAATAATC
* * * *
7867339 TTGCTTTTACTTCAATTTCAGAGATAAAGGCGTGTTATCCAACTCTACTTCAATTTTAAGGGGAT
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGGGGAT
* * * *
7867404 GATGTTGCCCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGG
65 GACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCG
* *
7867469 GA-TGACG
130 GATTGGCA
* *
7867476 TTGCTCTTACTTCAATTTCGGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
7867541 ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGG
66 ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGG
7867606 ATTGGCA
131 ATTGGCA
* *
7867613 TTACTCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
7867678 ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGG
66 ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGG
7867743 ATTGGCA
131 ATTGGCA
*
7867750 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTTAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
* * *
7867815 ACGTTGCCCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGGG
66 ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGG
* *
7867880 A-TGACG
131 ATTGGCA
7867886 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAA-GGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
7867950 ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGG
66 ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGG
7868015 ATTGGCA
131 ATTGGCA
*
7868022 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTTAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
* * * *
7868087 ACGTTGCTTTTACTTCAGTTTTAGAGATGAAGACGCGTTATCCACTCTACTTCAATTTCAAGCGG
66 ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGG
*
7868152 ATTAGCA
131 ATTGGCA
*
7868159 TTGATCTT
1 TTGCTCTT
7868167 GTTTGGTCTG
Statistics
Matches: 653, Mismatches: 35, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
135 69 0.11
136 206 0.32
137 378 0.58
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (137 bp):
TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGG
ATTGGCA
Found at i:7867697 original size:205 final size:204
Alignment explanation
Indices: 7867339--7868153 Score: 1353
Period size: 205 Copynumber: 4.0 Consensus size: 204
7867329 GGAAATAATC
* * * * *
7867339 TTGCTTTTACTTCAATTTCAGAGATAAAGGCGTGTTATCCAACTCTACTTCAATTTTAAGGGGAT
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGCGGAT
**
7867404 GATGTTGCCCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGG
65 GACATTGCCCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGG
* *
7867469 GATGACGTTGCTCTTACTTCAATTTCGGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAA
130 GATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAA
*
7867534 GGGGATGACG
195 GCGGATGACG
7867544 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGATT
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGA-T
* * *
7867609 GGCATTACTCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGG
65 GACATTGCCCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGG
7867674 GATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAA
130 GATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAA
* *
7867739 GCGGATTGGCA
195 GCGGA-TGACG
* *
7867750 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTTAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGATG
*
7867815 ACGTTGCCCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGGG
66 ACATTGCCCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGGG
7867880 ATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAG
131 ATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAG
7867945 -GGATGACG
196 CGGATGACG
7867953 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGATT
1 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGA-T
* * * *
7868018 GGCATTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTTAATTTCAAGGG
65 GACATTGCCCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGG
* * * *
7868083 GATGACGTTGCTTTTACTTCAGTTTTAGAGATGAAGACGCGTTATCCACTCTACTTCAATTTCAA
130 GATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAA
7868148 GCGGAT
195 GCGGAT
7868154 TAGCATTGAT
Statistics
Matches: 572, Mismatches: 34, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
203 64 0.11
204 147 0.26
205 297 0.52
206 64 0.11
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (204 bp):
TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGATG
ACATTGCCCTTACTTCAATTTCAGAGATGAAGACGTGCTATCCACTCTACTTCAATTTCAAGGGG
ATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAG
CGGATGACG
Found at i:7878640 original size:59 final size:57
Alignment explanation
Indices: 7878449--7878644 Score: 171
Period size: 59 Copynumber: 3.4 Consensus size: 57
7878439 TGGGTTTTTT
* * *
7878449 AGGGGTAAAATGGTAATTTTTGTGAAATCGAGGCTAAAAATGGAATTTGGAAAGTT-
1 AGGGGTAAAATGGTAATTTTGGTGAAATTGAGGTTAAAAATGGAATTTGGAAAGTTC
* * ** * * * *
7878505 TGGGGAATAAAATAGTAAATTTTGGCAAAAATAAGGTCAAAAATGAAATTTTGGAAAGTTC
1 AGGGG--TAAAATGGT-AATTTTGGTGAAATTGAGGTTAAAAATGGAA-TTTGGAAAGTTC
* * * * *
7878566 -GGAGGCAAAACGGTAAGTTTTGGTGAAATTGGGGTTAAAAATGGGATTTAGGGAAGTTC
1 AGG-GGTAAAATGGTAA-TTTTGGTGAAATTGAGGTTAAAAATGGAATTT-GGAAAGTTC
7878625 AGGGGTAAAATGGTAATTTT
1 AGGGGTAAAATGGTAATTTT
7878645 TTGGAAGTTT
Statistics
Matches: 106, Mismatches: 25, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
56 4 0.04
58 17 0.16
59 68 0.64
60 15 0.14
61 2 0.02
ACGTcount: A:0.38, C:0.04, G:0.29, T:0.29
Consensus pattern (57 bp):
AGGGGTAAAATGGTAATTTTGGTGAAATTGAGGTTAAAAATGGAATTTGGAAAGTTC
Found at i:7878651 original size:30 final size:30
Alignment explanation
Indices: 7878617--7878704 Score: 94
Period size: 30 Copynumber: 2.9 Consensus size: 30
7878607 TGGGATTTAG
*
7878617 GGAAG-TTCAGGGGT-AAAATGGTAATTTTTT
1 GGAAGTTTC-GGGGTCAAAAT-ATAATTTTTT
7878647 GGAAGTTTCGGGGTCAAAATATAA--TTTT
1 GGAAGTTTCGGGGTCAAAATATAATTTTTT
*
7878675 GGAAAAGTTTCGGGGTCAAAATGTAATTTT
1 GG--AAGTTTCGGGGTCAAAATATAATTTT
7878705 GGAAAAGTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
28 6 0.12
30 34 0.68
31 8 0.16
32 2 0.04
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.35
Consensus pattern (30 bp):
GGAAGTTTCGGGGTCAAAATATAATTTTTT
Found at i:7878705 original size:30 final size:30
Alignment explanation
Indices: 7878649--7879008 Score: 443
Period size: 30 Copynumber: 12.0 Consensus size: 30
7878639 AATTTTTTGG
* *
7878649 AAGTTTCGGGGTCAAAATATAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
*
7878679 AAGTTTCGGGGTCAAAATGTAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* * * *
7878709 AAGTTTTAGGGTTAAAATGTAATTATGAAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* * *
7878739 AAGTTTTGGGGTCGAAATATGATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
** *
7878769 AAGTTTCAGGGTCAAAATGTAA-TTTCGATA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGA-A
* *
7878799 AATTTTTGGGGTCAAAATATAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* *
7878829 ACGTTTTAGGGTCAAAATGTAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
** * **
7878859 AAGTTTTAAGGTTAAAACATAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
7878889 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
** * *
7878919 ATTTTTTGGGGTTAAAATATAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* *
7878949 AAGTTTTAGGGTGAAAATGTAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
7878979 AAGTTTTGGGGTCAAAATGTAATTTCTGGA
1 AAGTTTTGGGGTCAAAATGTAATTT-TGGA
7879009 CAATTTAAGG
Statistics
Matches: 278, Mismatches: 49, Indels: 5
0.84 0.15 0.02
Matches are distributed among these distances:
29 5 0.02
30 264 0.95
31 9 0.03
ACGTcount: A:0.36, C:0.04, G:0.23, T:0.37
Consensus pattern (30 bp):
AAGTTTTGGGGTCAAAATGTAATTTTGGAA
Found at i:7879898 original size:19 final size:21
Alignment explanation
Indices: 7879874--7879912 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
7879864 GGAAGTTTGC
7879874 AAAATATTT-TTTTA-TTTTA
1 AAAATATTTATTTTAGTTTTA
7879893 AAAATATTTATTTTAGTTTT
1 AAAATATTTATTTTAGTTTT
7879913 TTTTAATCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 5 0.28
21 4 0.22
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
AAAATATTTATTTTAGTTTTA
Found at i:7880069 original size:3 final size:3
Alignment explanation
Indices: 7880061--7880108 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
7880051 ATGTTCTTTT
* *
7880061 TTA TTA TTA -AA TTA TTA TTTA TTA TTA TTA TTA TTA TTTA TTA GTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA -TTA TTA TTA
7880107 TT
1 TT
7880109 GCATTTATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
2 1 0.03
3 31 0.82
4 6 0.16
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7880095 original size:19 final size:19
Alignment explanation
Indices: 7880060--7880108 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
7880050 CATGTTCTTT
*
7880060 TTTATTATTA-AATTATTA
1 TTTATTATTATTATTATTA
7880078 TTTATTATTATTATTATTA
1 TTTATTATTATTATTATTA
*
7880097 TTTATTAGTATT
1 TTTATTATTATT
7880109 GCATTTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 10 0.36
19 18 0.64
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTATTATTATTATTATTA
Found at i:7880912 original size:6 final size:6
Alignment explanation
Indices: 7880903--7881001 Score: 82
Period size: 6 Copynumber: 16.8 Consensus size: 6
7880893 TTTTTTAATG
* ** *
7880903 TTAAAT TTAATAT TTTAAT TTTTAT TTAAAT TTAAA- TTAAA- GTAAAT
1 TTAAAT TTAA-AT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
**
7880950 TTAAAT AATTAAAT TTAAAT TTAAA- ACAAAT TTAAAT TTAAA- -TAAAT
1 TTAAAT --TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
7880997 TTAAA
1 TTAAA
7881002 ATCAATTTAA
Statistics
Matches: 76, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
4 4 0.05
5 12 0.16
6 49 0.64
7 5 0.07
8 6 0.08
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (6 bp):
TTAAAT
Found at i:7880942 original size:11 final size:11
Alignment explanation
Indices: 7880928--7881011 Score: 54
Period size: 11 Copynumber: 7.9 Consensus size: 11
7880918 TAATTTTTAT
7880928 TTAAATTTAAA
1 TTAAATTTAAA
*
7880939 TTAAA-GTAAA
1 TTAAATTTAAA
7880949 TTTAAA--T-AA
1 -TTAAATTTAAA
7880958 TTAAATTTAAA
1 TTAAATTTAAA
**
7880969 TTTAAA-ACAAA
1 -TTAAATTTAAA
7880980 TTTAAATTTAAA
1 -TTAAATTTAAA
7880992 -TAAATTTAAA
1 TTAAATTTAAA
* *
7881002 ATCAATTTAA
1 TTAAATTTAA
7881012 CTCTAAATTA
Statistics
Matches: 60, Mismatches: 6, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
8 5 0.08
9 2 0.03
10 16 0.27
11 29 0.48
12 8 0.13
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.40
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:7880950 original size:16 final size:16
Alignment explanation
Indices: 7880929--7881001 Score: 89
Period size: 16 Copynumber: 4.6 Consensus size: 16
7880919 AATTTTTATT
7880929 TAAATTTAAA-TTAAA
1 TAAATTTAAATTTAAA
*
7880944 GTAAATTTAAA--TAAT
1 -TAAATTTAAATTTAAA
7880959 TAAATTTAAATTTAAAA
1 TAAATTTAAATTT-AAA
*
7880976 CAAATTTAAATTTAAA
1 TAAATTTAAATTTAAA
7880992 TAAATTTAAA
1 TAAATTTAAA
7881002 ATCAATTTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
14 10 0.20
15 3 0.06
16 23 0.46
17 14 0.28
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (16 bp):
TAAATTTAAATTTAAA
Found at i:7881000 original size:27 final size:30
Alignment explanation
Indices: 7880928--7881011 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 30
7880918 TAATTTTTAT
*
7880928 TTAAATTTAAA-TTAAAGT-AAATTTAAATAA
1 TTAAA-TTAAATTTAAAATCAAATTTAAAT-A
7880958 TTAAATTTAAATTTAAAA-CAAATTTAAAT-
1 TTAAA-TTAAATTTAAAATCAAATTTAAATA
7880987 TTAAA-TAAATTTAAAATC-AATTTAA
1 TTAAATTAAATTTAAAATCAAATTTAA
7881012 CTCTAAATTA
Statistics
Matches: 50, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
27 18 0.36
28 1 0.02
29 5 0.10
30 11 0.22
31 15 0.30
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.40
Consensus pattern (30 bp):
TTAAATTAAATTTAAAATCAAATTTAAATA
Found at i:7881018 original size:27 final size:27
Alignment explanation
Indices: 7880965--7881019 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
7880955 TAATTAAATT
*
7880965 TAAATTTAAAACAAATTTAAATTTAAA
1 TAAATTTAAAACAAATTTAAATCTAAA
*
7880992 TAAATTTAAAATC-AATTTAACTCTAAA
1 TAAATTTAAAA-CAAATTTAAATCTAAA
7881019 T
1 T
7881020 TAAACGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (27 bp):
TAAATTTAAAACAAATTTAAATCTAAA
Found at i:7881893 original size:106 final size:105
Alignment explanation
Indices: 7881751--7881962 Score: 397
Period size: 106 Copynumber: 2.0 Consensus size: 105
7881741 CTATACTTTT
*
7881751 ATCATTTTTACAATTTAGTCCTTCTATTCAATTAACTATCTAATCAATGATATTTTCGAATCATA
1 ATCATTTTTACAATTTAGACCTTCTATTCAATTAACTATCTAATCAATGATATTTTCGAATCATA
7881816 ATTCATACGATGCATATATCACCAAAAATATTTAAAAAGA
66 ATTCATACGATGCATATATCACCAAAAATATTTAAAAAGA
*
7881856 ATCATTTTTTCAATTTAGACCTTTCTATTCAATTAACTATCTAATCAATGATATTTTCGAATCAT
1 ATCATTTTTACAATTTAGACC-TTCTATTCAATTAACTATCTAATCAATGATATTTTCGAATCAT
7881921 AATTCATACGATGCATATATCACCAAAAATATTTAAAAAGA
65 AATTCATACGATGCATATATCACCAAAAATATTTAAAAAGA
7881962 A
1 A
7881963 AAATTTTATG
Statistics
Matches: 104, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
105 19 0.18
106 85 0.82
ACGTcount: A:0.40, C:0.16, G:0.06, T:0.38
Consensus pattern (105 bp):
ATCATTTTTACAATTTAGACCTTCTATTCAATTAACTATCTAATCAATGATATTTTCGAATCATA
ATTCATACGATGCATATATCACCAAAAATATTTAAAAAGA
Found at i:7882121 original size:14 final size:15
Alignment explanation
Indices: 7882092--7882124 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
7882082 TTAGAGTTTA
7882092 TAAATTTTAATTAAT
1 TAAATTTTAATTAAT
*
7882107 TAAATTTT-TTTAAT
1 TAAATTTTAATTAAT
7882121 TAAA
1 TAAA
7882125 AATTTATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TAAATTTTAATTAAT
Found at i:7904053 original size:14 final size:15
Alignment explanation
Indices: 7904017--7904056 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
7904007 ATTCATTTAA
7904017 ATACATTTTGTTTGT
1 ATACATTTTGTTTGT
*
7904032 AT-TA-TTTGTTT-T
1 ATACATTTTGTTTGT
7904044 ATACATTTTGTTT
1 ATACATTTTGTTT
7904057 ATAAAACAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
12 3 0.14
13 8 0.38
14 8 0.38
15 2 0.10
ACGTcount: A:0.20, C:0.05, G:0.10, T:0.65
Consensus pattern (15 bp):
ATACATTTTGTTTGT
Found at i:7905795 original size:23 final size:24
Alignment explanation
Indices: 7905739--7905801 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
7905729 TCATTAACAT
*
7905739 TGTTCGTAAACATGTTCAATTATA
1 TGTTCGTGAACATGTTCAATTATA
* * **
7905763 TGTTCATGAATATGTTCGTTTA-A
1 TGTTCGTGAACATGTTCAATTATA
7905786 TGTTCGTGAACATGTT
1 TGTTCGTGAACATGTT
7905802 AGATTAAGAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 15 0.47
24 17 0.53
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.44
Consensus pattern (24 bp):
TGTTCGTGAACATGTTCAATTATA
Found at i:7905808 original size:23 final size:23
Alignment explanation
Indices: 7905739--7905808 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
7905729 TCATTAACAT
*
7905739 TGTTCGTAAACATGTTCA-ATTATA
1 TGTTCGTGAACATGTT-AGATTA-A
* * * *
7905763 TGTTCATGAATATGTTCGTTTAA
1 TGTTCGTGAACATGTTAGATTAA
7905786 TGTTCGTGAACATGTTAGATTAA
1 TGTTCGTGAACATGTTAGATTAA
7905809 GAAACAAACG
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
23 20 0.56
24 16 0.44
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (23 bp):
TGTTCGTGAACATGTTAGATTAA
Found at i:7923932 original size:15 final size:14
Alignment explanation
Indices: 7923891--7923933 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
7923881 CACGAGTAGC
7923891 AATTAATAAG-AGA
1 AATTAATAAGAAGA
*
7923904 AATTAGATACGAAGA
1 AATTA-ATAAGAAGA
7923919 AATATAATAAGAAGA
1 AAT-TAATAAGAAGA
7923934 TAAATAATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 5 0.20
14 4 0.16
15 14 0.56
16 2 0.08
ACGTcount: A:0.60, C:0.02, G:0.16, T:0.21
Consensus pattern (14 bp):
AATTAATAAGAAGA
Found at i:7924068 original size:30 final size:28
Alignment explanation
Indices: 7924028--7924136 Score: 98
Period size: 30 Copynumber: 3.7 Consensus size: 28
7924018 TTTGAATACC
*
7924028 CGGGGGCAAAATGGTAATTTTTGGTGAAAT
1 CGGGGTCAAAATGG-AA-TTTTGGTGAAAT
7924058 CGGGGTCAAAAATGGAATTTT-G-GAAAGTT
1 CGGGGTC-AAAATGGAATTTTGGTGAAA--T
7924087 CAGGGGT-AAAATGGTAATTTTGGTGAAAT
1 C-GGGGTCAAAATGG-AATTTTGGTGAAAT
* *
7924116 TGGGGTTAAAAATGGAATTTT
1 CGGGG-TCAAAATGGAATTTT
7924137 TGAAGGTTCG
Statistics
Matches: 68, Mismatches: 2, Indels: 19
0.76 0.02 0.21
Matches are distributed among these distances:
27 4 0.06
28 12 0.18
29 20 0.29
30 21 0.31
31 11 0.16
ACGTcount: A:0.33, C:0.05, G:0.31, T:0.31
Consensus pattern (28 bp):
CGGGGTCAAAATGGAATTTTGGTGAAAT
Found at i:7924121 original size:58 final size:58
Alignment explanation
Indices: 7924030--7924165 Score: 191
Period size: 58 Copynumber: 2.3 Consensus size: 58
7924020 TGAATACCCG
*
7924030 GGGGCAAAATGGTAATTTTTGGTGAAATCGGGGTCAAAAATGGAATTTTGGAAAGTTCA
1 GGGGTAAAATGGTAA-TTTTGGTGAAATCGGGGTCAAAAATGGAATTTTGGAAAGTTCA
* * * * *
7924089 GGGGTAAAATGGTAATTTTGGTGAAATTGGGGTTAAAAATGGAATTTTTGAAGGTTCG
1 GGGGTAAAATGGTAATTTTGGTGAAATCGGGGTCAAAAATGGAATTTTGGAAAGTTCA
**
7924147 GGGGTAAAACAGTAATTTT
1 GGGGTAAAATGGTAATTTT
7924166 TAGAAGTTTT
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
58 55 0.80
59 14 0.20
ACGTcount: A:0.33, C:0.04, G:0.31, T:0.32
Consensus pattern (58 bp):
GGGGTAAAATGGTAATTTTGGTGAAATCGGGGTCAAAAATGGAATTTTGGAAAGTTCA
Found at i:7924138 original size:30 final size:30
Alignment explanation
Indices: 7924035--7924136 Score: 108
Period size: 29 Copynumber: 3.5 Consensus size: 30
7924025 ACCCGGGGGC
* *
7924035 AAAATGGTAATTTTTGGTGAAATCGGGGTCA
1 AAAATGGTAA-TTTTGGTGAAATTGGGGTTA
7924066 AAAATGG-AATTTT-G-GAAAGTTCAGGGG-T-
1 AAAATGGTAATTTTGGTGAAA-TT--GGGGTTA
7924094 AAAATGGTAATTTTGGTGAAATTGGGGTTA
1 AAAATGGTAATTTTGGTGAAATTGGGGTTA
7924124 AAAATGG-AATTTT
1 AAAATGGTAATTTT
7924137 TGAAGGTTCG
Statistics
Matches: 61, Mismatches: 2, Indels: 18
0.75 0.02 0.22
Matches are distributed among these distances:
27 4 0.07
28 13 0.21
29 17 0.28
30 16 0.26
31 11 0.18
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.33
Consensus pattern (30 bp):
AAAATGGTAATTTTGGTGAAATTGGGGTTA
Found at i:7924149 original size:29 final size:29
Alignment explanation
Indices: 7924057--7924225 Score: 102
Period size: 29 Copynumber: 5.8 Consensus size: 29
7924047 TTTGGTGAAA
* *
7924057 TCGGGGTCAAAAATGGAATTTTGGAAAGT
1 TCGGGGTTAAAAATGGAATTTTTGAAAGT
7924086 TCAGGGG-T-AAAATGGTAATTTTGGTGAAA-T
1 TC-GGGGTTAAAAATGG-AATTTT--TGAAAGT
*
7924116 T-GGGGTTAAAAATGGAATTTTTGAAGGT
1 TCGGGGTTAAAAATGGAATTTTTGAAAGT
* *
7924144 TCGGGGGTAAAACA-GTAATTTTT-AGAAGTT
1 TCGGGGTTAAAA-ATGGAATTTTTGA-AAG-T
* * * * *
7924174 TTGGGG-TCAAAATGTAATTTCTAGAAATT
1 TCGGGGTTAAAAATGGAATTT-TTGAAAGT
* *
7924203 TTGGGGTT-AAAATGTAATTTTTG
1 TCGGGGTTAAAAATGGAATTTTTG
7924226 GATTGTTTGG
Statistics
Matches: 114, Mismatches: 11, Indels: 31
0.73 0.07 0.20
Matches are distributed among these distances:
27 4 0.04
28 17 0.15
29 64 0.56
30 24 0.21
31 5 0.04
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.36
Consensus pattern (29 bp):
TCGGGGTTAAAAATGGAATTTTTGAAAGT
Found at i:7924186 original size:58 final size:56
Alignment explanation
Indices: 7924041--7924193 Score: 146
Period size: 58 Copynumber: 2.6 Consensus size: 56
7924031 GGGCAAAATG
* **
7924041 GTAATTTTTGGTGAAATCGGGGTCAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATG
1 GTAA-TTTT-GTGAAATTGGGGTC-AAAATGGAATTTTGGAAAGTTCAGGGGTAAAACA
* * * *
7924100 GTAATTTTGGTGAAATTGGGGTTAAAAATGGAATTTTTGAAGGTTCGGGGGTAAAACA
1 GTAATTTT-GTGAAATTGGGG-TCAAAATGGAATTTTGGAAAGTTCAGGGGTAAAACA
* *
7924158 GTAATTTT-TAGAAGTTTTGGGGTCAAAATGTAATTT
1 GTAATTTTGT-GAA--ATTGGGGTCAAAATGGAATTT
7924194 CTAGAAATTT
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
56 1 0.01
57 3 0.04
58 65 0.81
59 11 0.14
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.35
Consensus pattern (56 bp):
GTAATTTTGTGAAATTGGGGTCAAAATGGAATTTTGGAAAGTTCAGGGGTAAAACA
Found at i:7924490 original size:161 final size:161
Alignment explanation
Indices: 7924315--7924954 Score: 1181
Period size: 161 Copynumber: 4.0 Consensus size: 161
7924305 GATTGAATTG
*
7924315 TAAACCTTGAAAAATTCTTGGGCCAATTTTGTAATTAAATAAAAGTTGATTTGGGGATTAAATTA
1 TAAACCTTGAAAAATTCTCGGGCCAATTTTGTAATTAAATAAAAGTTGATTTGGGGATTAAATTA
*
7924380 AAACAAATTGAAAATATCAGGGACCAAATGCAAAAATAAGCCAAAAATGACATGTGGCAGCCTCT
66 AAACAAATTGAAAATATCAGGGACCAAATGCAAAAATAAGCCAAAAATGACACGTGGCAGCCTCT
7924445 GGTGCGGTCAAACAGTCAAAGGACTAATTTA
131 GGTGCGGTCAAACAGTCAAAGGACTAATTTA
7924476 TAAACCTTGAAAAATTCTCGGGCCAATTTTGTAATTAAATAAAAGTTGATTTGGGGATTAAATTA
1 TAAACCTTGAAAAATTCTCGGGCCAATTTTGTAATTAAATAAAAGTTGATTTGGGGATTAAATTA
*
7924541 AAACAAATTGAAAATATCAGGGACCAAATGCAAAAATAAGCCAAAAATGACATGTGGCAGCCTCT
66 AAACAAATTGAAAATATCAGGGACCAAATGCAAAAATAAGCCAAAAATGACACGTGGCAGCCTCT
7924606 GGTGCGGTCAAACAGTCAAAGGACTAATTTA
131 GGTGCGGTCAAACAGTCAAAGGACTAATTTA
7924637 TAAACCTTGAAAAATTCTCGGGCCAATTTTGTAATTAAATAAAAGTTGATTTGGGGATTAAATTA
1 TAAACCTTGAAAAATTCTCGGGCCAATTTTGTAATTAAATAAAAGTTGATTTGGGGATTAAATTA
7924702 AAACAAATTGAAAATATCAGGGACCAAATGCAAAAATAAGCCAAAAATGACACGTGGCAGCCTCT
66 AAACAAATTGAAAATATCAGGGACCAAATGCAAAAATAAGCCAAAAATGACACGTGGCAGCCTCT
7924767 GGTGCGGTCAAACAGTCAAAGGACTAATTTA
131 GGTGCGGTCAAACAGTCAAAGGACTAATTTA
* * * *
7924798 TAAACCTTGAAAAATTCTCGAGCCAATTTTGTAATTAAATAAAAGTTGATTTAGGGATTCAATCA
1 TAAACCTTGAAAAATTCTCGGGCCAATTTTGTAATTAAATAAAAGTTGATTTGGGGATTAAATTA
* * *
7924863 AAACAAATTAAAAATGTCAGGGACCAAATGCAGAAATAAGCCAAAAATGACACGTGGCAGCCTCT
66 AAACAAATTGAAAATATCAGGGACCAAATGCAAAAATAAGCCAAAAATGACACGTGGCAGCCTCT
*
7924928 GGTGCGGTCAAACAGTCAAAGTACTAA
131 GGTGCGGTCAAACAGTCAAAGGACTAA
7924955 ATTGAGAACT
Statistics
Matches: 469, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
161 469 1.00
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (161 bp):
TAAACCTTGAAAAATTCTCGGGCCAATTTTGTAATTAAATAAAAGTTGATTTGGGGATTAAATTA
AAACAAATTGAAAATATCAGGGACCAAATGCAAAAATAAGCCAAAAATGACACGTGGCAGCCTCT
GGTGCGGTCAAACAGTCAAAGGACTAATTTA
Found at i:7926510 original size:17 final size:16
Alignment explanation
Indices: 7926490--7926554 Score: 85
Period size: 17 Copynumber: 3.9 Consensus size: 16
7926480 AATTTTTATT
7926490 TAAATTTAAATTCAAA
1 TAAATTTAAATTCAAA
*
7926506 GTAAATTTAAATTTAGAA
1 -TAAATTTAAATTCA-AA
*
7926524 TAAATTTAAATTTAAA
1 TAAATTTAAATTCAAA
*
7926540 TAAATTTAAAATCAA
1 TAAATTTAAATTCAA
7926555 TTTAACTCTA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
16 15 0.34
17 27 0.61
18 2 0.05
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38
Consensus pattern (16 bp):
TAAATTTAAATTCAAA
Found at i:7926516 original size:6 final size:6
Alignment explanation
Indices: 7926464--7926549 Score: 65
Period size: 6 Copynumber: 14.8 Consensus size: 6
7926454 TTTTTTAATG
* * ** * *
7926464 TTAAAT TTAGTAT TTTAAT TTTTAT TTAAAT TTAAAT TCAAA- GTAAAT
1 TTAAAT TTA-AAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
7926512 TTAAAT TTAGAA- -TAAAT TTAAAT TTAAA- -TAAAT TTAAA
1 TTAAAT TTA-AAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAA
7926550 ATCAATTTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 14
0.72 0.11 0.16
Matches are distributed among these distances:
4 6 0.10
5 5 0.08
6 46 0.73
7 6 0.10
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (6 bp):
TTAAAT
Found at i:7926566 original size:27 final size:27
Alignment explanation
Indices: 7926513--7926567 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7926503 AAAGTAAATT
* *
7926513 TAAATTTAGAATAAATTTAAATTTAAA
1 TAAATTTAAAATAAATTTAAATCTAAA
* *
7926540 TAAATTTAAAATCAATTTAACTCTAAA
1 TAAATTTAAAATAAATTTAAATCTAAA
7926567 T
1 T
7926568 TAAACAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (27 bp):
TAAATTTAAAATAAATTTAAATCTAAA
Found at i:7930794 original size:3 final size:3
Alignment explanation
Indices: 7930788--7930813 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7930778 CAGCATCAAC
7930788 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
7930814 TTCCTTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:7931175 original size:2 final size:2
Alignment explanation
Indices: 7931164--7931210 Score: 71
Period size: 2 Copynumber: 24.0 Consensus size: 2
7931154 TTAACATTTT
7931164 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
7931205 TA TA TA
1 TA TA TA
7931211 AACACATCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.05
2 38 0.90
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7936624 original size:61 final size:61
Alignment explanation
Indices: 7936478--7936626 Score: 149
Period size: 61 Copynumber: 2.4 Consensus size: 61
7936468 TGTTACACAT
* * **
7936478 TCTATCAATTTGA-TCTTAAATATAAAAAATTCAACAAATTTAGCCTTCAATGTTTATAAAA
1 TCTATCAATTT-ATTCTTAAATCTAAAAAATTAAACAAATTTAGCCTTCAAAATTTATAAAA
* * * * ** *
7936539 TTTGTCATTTTAGTT-TTAATTCTAAAAAATTAAATGAATTTGGCCTTCAAAATTTATAAAA
1 TCTATCAATTTA-TTCTTAAATCTAAAAAATTAAACAAATTTAGCCTTCAAAATTTATAAAA
* *
7936600 TCTATCAATTTATTCCTAACTCTAAAA
1 TCTATCAATTTATTCTTAAATCTAAAA
7936627 TTTTAAAAAT
Statistics
Matches: 69, Mismatches: 16, Indels: 6
0.76 0.18 0.07
Matches are distributed among these distances:
60 3 0.04
61 65 0.94
62 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (61 bp):
TCTATCAATTTATTCTTAAATCTAAAAAATTAAACAAATTTAGCCTTCAAAATTTATAAAA
Found at i:7938985 original size:34 final size:36
Alignment explanation
Indices: 7938953--7939067 Score: 122
Period size: 40 Copynumber: 2.9 Consensus size: 36
7938943 TCGTGACTCG
*
7938953 AAATGAGCATGAGATTATATTTAAGGAAGACTCAGGACTC
1 AAATGAGCATGAGATTATATTAAAGGAAGACTCA-G---C
7938993 AAATGAGCATGAGATTATATTAAAGGAAGACTCATGTCTC
1 AAATGAGCATGAGATTATATTAAAGGAAGACTCA-G---C
* *
7939033 AAGGTGAGCATGAGATTATATTAAAGCAAGACTCA
1 AA-ATGAGCATGAGATTATATTAAAGGAAGACTCA
7939068 TGTCTCGGGG
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 39 0.57
41 30 0.43
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (36 bp):
AAATGAGCATGAGATTATATTAAAGGAAGACTCAGC
Found at i:7939007 original size:81 final size:82
Alignment explanation
Indices: 7938895--7939144 Score: 306
Period size: 81 Copynumber: 3.0 Consensus size: 82
7938885 ATGTATAAAT
* * * * *
7938895 GGAAGACTCATGTCTTGAGATGAGCATGAGATTATATTAAAGAAAGACTCGTGACTCGAAATGAG
1 GGAAGACTCAGGACTCGAAATGAGCATGAGATTATATTAAAGGAAGACTCGTGACTCGAAATGAG
7938960 CATGAGATTATATTTAA
66 CATGAGATTATATTTAA
* * *
7938977 GGAAGACTCAGGACTC-AAATGAGCATGAGATTATATTAAAGGAAGACTCATGTCTC-AAGGTGA
1 GGAAGACTCAGGACTCGAAATGAGCATGAGATTATATTAAAGGAAGACTCGTGACTCGAA-ATGA
*
7939040 GCATGAGATTATATTAAA
65 GCATGAGATTATATTTAA
* * * *** * **
7939058 GCAAGACTCATGTCTCGGGGTAAGCATGAGATTATATTAAAGGAAGACTCGTGACTCGGGATGAG
1 GGAAGACTCAGGACTCGAAATGAGCATGAGATTATATTAAAGGAAGACTCGTGACTCGAAATGAG
7939123 CATGAGATTATATTTAAA
66 CATGAGATTATATTT-AA
7939141 GGAA
1 GGAA
7939145 AACTTATGAC
Statistics
Matches: 141, Mismatches: 23, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
80 2 0.01
81 69 0.49
82 65 0.46
83 5 0.04
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (82 bp):
GGAAGACTCAGGACTCGAAATGAGCATGAGATTATATTAAAGGAAGACTCGTGACTCGAAATGAG
CATGAGATTATATTTAA
Found at i:7939114 original size:122 final size:124
Alignment explanation
Indices: 7938890--7939144 Score: 354
Period size: 122 Copynumber: 2.1 Consensus size: 124
7938880 ACTTGATGTA
** *
7938890 TAAATGGAAGACTCATGTCTTGAGATGAGCATGAGATTATATTAAAGAAAGACTCGTGACTCGAA
1 TAAA-GGAAGACTCATGTCTCAAGATGAGCATGAGATTATATTAAAGAAAGACTCATGACTCGAA
* *
7938955 ATGAGCATGAGATTATATTTAAGGAAGACTCAGGACTC-AAATGAGCATGAGATTATA-T
65 ATAAGCATGAGATTATATTAAAGGAAGACTCAGGACTCGAAATGAGCATGAGATTATATT
* * * ***
7939013 TAAAGGAAGACTCATGTCTCAAGGTGAGCATGAGATTATATTAAAGCAAGACTCATGTCTCGGGG
1 TAAAGGAAGACTCATGTCTCAAGATGAGCATGAGATTATATTAAAGAAAGACTCATGACTCGAAA
**
7939078 TAAGCATGAGATTATATTAAAGGAAGACTC-GTGACTCGGGATGAGCATGAGATTATATT
66 TAAGCATGAGATTATATTAAAGGAAGACTCAG-GACTCGAAATGAGCATGAGATTATATT
7939137 TAAAGGAA
1 TAAAGGAA
7939145 AACTTATGAC
Statistics
Matches: 116, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
121 1 0.01
122 85 0.73
123 21 0.18
124 9 0.08
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (124 bp):
TAAAGGAAGACTCATGTCTCAAGATGAGCATGAGATTATATTAAAGAAAGACTCATGACTCGAAA
TAAGCATGAGATTATATTAAAGGAAGACTCAGGACTCGAAATGAGCATGAGATTATATT
Found at i:7939165 original size:41 final size:41
Alignment explanation
Indices: 7938890--7939186 Score: 300
Period size: 41 Copynumber: 7.2 Consensus size: 41
7938880 ACTTGATGTA
* *
7938890 TAAATGGAAGACTCATGTCTTGAG-ATGAGCATGAGATTATAT
1 TAAA-GGAAGACTCATGACTCG-GTATGAGCATGAGATTATAT
* * **
7938932 TAAAGAAAGACTCGTGACTCGAAATGAGCATGAGATTATAT
1 TAAAGGAAGACTCATGACTCGGTATGAGCATGAGATTATAT
* * **
7938973 TTAAGGAAGACTCAGGACTC-AAATGAGCATGAGATTATAT
1 TAAAGGAAGACTCATGACTCGGTATGAGCATGAGATTATAT
*
7939013 TAAAGGAAGACTCATGTCTCAAGG--TGAGCATGAGATTATAT
1 TAAAGGAAGACTCATGACTC--GGTATGAGCATGAGATTATAT
* * ** *
7939054 TAAAGCAAGACTCATGTCTCGGGGTAAGCATGAGATTATAT
1 TAAAGGAAGACTCATGACTCGGTATGAGCATGAGATTATAT
* *
7939095 TAAAGGAAGACTCGTGACTCGGGATGAGCATGAGATTATATT
1 TAAAGGAAGACTCATGACTCGGTATGAGCATGAGATTATA-T
* * * *
7939137 TAAAGGAAAACTTATGACTCGGTA-GAGCATAAGATTGT-T
1 TAAAGGAAGACTCATGACTCGGTATGAGCATGAGATTATAT
7939176 TAAAAGGAAGA
1 T-AAAGGAAGA
7939187 TCTACGACTC
Statistics
Matches: 220, Mismatches: 27, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
39 4 0.02
40 45 0.20
41 146 0.66
42 25 0.11
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.26
Consensus pattern (41 bp):
TAAAGGAAGACTCATGACTCGGTATGAGCATGAGATTATAT
Found at i:7939179 original size:122 final size:121
Alignment explanation
Indices: 7938915--7939172 Score: 322
Period size: 122 Copynumber: 2.1 Consensus size: 121
7938905 TGTCTTGAGA
* * * * *** * *
7938915 TGAGCATGAGATTATATTAAAGAAAGACTCGTGACTCGAAATGAGCATGAGATTATATTTAAGGA
1 TGAGCATAAGATTATATTAAAGCAAGACTCATGTCTCGGGGTAAGCATGAGATTATATTAAAGGA
* *
7938980 AGACTCAGGACTCAAATGAGCATGAGATTATATTAAAGGAAGACTCATGTCTCAAGG
66 AGACTCAGGACTCAAATGAGCATGAGATTATATTAAAGGAAAACTCATGACTC-AGG
*
7939037 TGAGCATGAGATTATATTAAAGCAAGACTCATGTCTCGGGGTAAGCATGAGATTATATTAAAGGA
1 TGAGCATAAGATTATATTAAAGCAAGACTCATGTCTCGGGGTAAGCATGAGATTATATTAAAGGA
** *
7939102 AGACTC-GTGACTCGGGATGAGCATGAGATTATATTTAAAGGAAAACTTATGACTC-GG
66 AGACTCAG-GACTC-AAATGAGCATGAGATTATA-TTAAAGGAAAACTCATGACTCAGG
7939159 TAGAGCATAAGATT
1 T-GAGCATAAGATT
7939173 GTTTAAAAGG
Statistics
Matches: 118, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
121 1 0.01
122 71 0.60
123 28 0.24
124 18 0.15
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (121 bp):
TGAGCATAAGATTATATTAAAGCAAGACTCATGTCTCGGGGTAAGCATGAGATTATATTAAAGGA
AGACTCAGGACTCAAATGAGCATGAGATTATATTAAAGGAAAACTCATGACTCAGG
Found at i:7965454 original size:21 final size:21
Alignment explanation
Indices: 7965428--7965469 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7965418 TCGGTTTCAT
7965428 TGACTTCAGCCACTTCGTCGA
1 TGACTTCAGCCACTTCGTCGA
7965449 TGACTTCAGCCACTTCGTCGA
1 TGACTTCAGCCACTTCGTCGA
7965470 CCTTCTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.19, T:0.29
Consensus pattern (21 bp):
TGACTTCAGCCACTTCGTCGA
Found at i:7968511 original size:59 final size:57
Alignment explanation
Indices: 7968434--7968785 Score: 326
Period size: 59 Copynumber: 6.0 Consensus size: 57
7968424 TTGATAAATA
* ** * * * *
7968434 ATGAAATCGCGGAGAAAAATGGGACTTATGGACACCCGGGGGAAAAATGGTAATTTTCG
1 ATGAAATCGGGGTTAAAAATGGGA-TT-TGAAAACTCGGGGGTAAAATGGTAATTTTCG
* *** * *
7968493 ATGAAATCGGGGTTAAAAATGGAATGTTAGAAGTTTTGGGGGTAAAATGGTAATTTTTG
1 ATGAAATCGGGGTTAAAAATGGGAT-TT-GAAAACTCGGGGGTAAAATGGTAATTTTCG
* * * **
7968552 ATGAAATCGAGGTTAAAAATGGAATTTTAAAGTTTCGGGGGTAAAATGGTAATTTTCG
1 ATGAAATCGGGGTTAAAAATGGGATTTGAAA-ACTCGGGGGTAAAATGGTAATTTTCG
* ** * *
7968610 GTGAAATCGGGGTTAAAAACAGTATTTTAAAAGCTTCGGGGGTAAAATGGTAATTTTCG
1 ATGAAATCGGGGTTAAAAATGGGATTTGAAAA-C-TCGGGGGTAAAATGGTAATTTTCG
* * *
7968669 GTGAAATCGGGGTTAAAAATGGTATTTTAAAAGCTTCGGGGGTAAAATGGTAATTTTCG
1 ATGAAATCGGGGTTAAAAATGGGATTTGAAAA-C-TCGGGGGTAAAATGGTAATTTTCG
* * * *
7968728 GTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATTCGGGGGGTAAAATGGTAATTTT
1 ATGAAATCGGGGTTAAAAATGGGA-TTTGAAA-ACTC-GGGGGTAAAATGGTAATTTT
7968786 TGAAAGTTTT
Statistics
Matches: 256, Mismatches: 29, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
57 2 0.01
58 54 0.21
59 173 0.68
60 26 0.10
61 1 0.00
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.30
Consensus pattern (57 bp):
ATGAAATCGGGGTTAAAAATGGGATTTGAAAACTCGGGGGTAAAATGGTAATTTTCG
Found at i:7968578 original size:30 final size:31
Alignment explanation
Indices: 7968476--7968756 Score: 185
Period size: 30 Copynumber: 9.5 Consensus size: 31
7968466 CACCCGGGGG
*
7968476 AAAAATGGTAATTTTCGATGAAATCGGGGTT
1 AAAAATGGTAATTTTAGATGAAATCGGGGTT
* * ** * *
7968507 AAAAATGG-AATGTTAGAAG-TTTTGGGGGT
1 AAAAATGGTAATTTTAGATGAAATCGGGGTT
* *
7968536 -AAAATGGTAATTTTTGATGAAATCGAGGTT
1 AAAAATGGTAATTTTAGATGAAATCGGGGTT
* ** *
7968566 AAAAATGG-AATTTTA-AAG-TTTCGGGGGT
1 AAAAATGGTAATTTTAGATGAAATCGGGGTT
* *
7968594 -AAAATGGTAATTTTCGGTGAAATCGGGGTT
1 AAAAATGGTAATTTTAGATGAAATCGGGGTT
** * * ** *
7968624 AAAAACAGT-ATTTTAAAAG-CTTCGGGGGT
1 AAAAATGGTAATTTTAGATGAAATCGGGGTT
* *
7968653 -AAAATGGTAATTTTCGGTGAAATCGGGGTT
1 AAAAATGGTAATTTTAGATGAAATCGGGGTT
* * ** *
7968683 AAAAATGGT-ATTTTAAAAG-CTTCGGGGGT
1 AAAAATGGTAATTTTAGATGAAATCGGGGTT
* *
7968712 -AAAATGGTAATTTTCGGTGAAATCGGGGTT
1 AAAAATGGTAATTTTAGATGAAATCGGGGTT
7968742 AAAAATGG-AATTTTA
1 AAAAATGGTAATTTTA
7968757 AAAGATTCGG
Statistics
Matches: 177, Mismatches: 60, Indels: 27
0.67 0.23 0.10
Matches are distributed among these distances:
27 7 0.04
28 33 0.19
29 43 0.24
30 58 0.33
31 36 0.20
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.32
Consensus pattern (31 bp):
AAAAATGGTAATTTTAGATGAAATCGGGGTT
Found at i:7968626 original size:117 final size:118
Alignment explanation
Indices: 7968470--7968788 Score: 487
Period size: 117 Copynumber: 2.7 Consensus size: 118
7968460 TATGGACACC
* * * * *
7968470 CGGGGGAAAAATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATGTTAGAAGTTTTGGGGG
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGTTTCGGGGG
*
7968535 TAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTT-AAAGTTT
66 TAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTTAAAAGCTT
** * *
7968587 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACAGTATTTTAAAAGCTTCGGGGG
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGTTTCGGGGG
* * * *
7968652 TAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGTATTTTAAAAGCTT
66 TAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTTAAAAGCTT
*
7968705 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATTCGGGGG
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGTTTC-GGGG
7968770 GTAAAATGGTAATTTTTGA
65 GTAAAATGGTAATTTTTGA
7968789 AAGTTTTGGG
Statistics
Matches: 180, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
117 97 0.54
118 62 0.34
119 21 0.12
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (118 bp):
CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGTTTCGGGGG
TAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTTAAAAGCTT
Found at i:7968775 original size:30 final size:29
Alignment explanation
Indices: 7968470--7968859 Score: 150
Period size: 30 Copynumber: 13.2 Consensus size: 29
7968460 TATGGACACC
* ** * *
7968470 CGGGGGAAAAATGGTAATTTTCGATGAAAT
1 CGGGGGTAAAATGGTAATTTTAAAAG-ATT
* * * *
7968500 CGGGGTTAAAAATGG-AATGTTAGAAGTTT
1 CGGGGGT-AAAATGGTAATTTTAAAAGATT
* ** * *
7968529 TGGGGGTAAAATGGTAATTTTTGATGAAAT
1 CGGGGGTAAAATGGTAATTTTAAAAG-ATT
* * *
7968559 CGAGGTTAAAAATGG-AATTTT-AAAGTTT
1 CGGGGGT-AAAATGGTAATTTTAAAAGATT
**** *
7968587 CGGGGGTAAAATGGTAATTTTCGGTGAAAT
1 CGGGGGTAAAATGGTAATTTTAAAAG-ATT
* ** *
7968617 CGGGGTTAAAAACAGT-ATTTTAAAAGCTT
1 CGGGGGT-AAAATGGTAATTTTAAAAGATT
**** *
7968646 CGGGGGTAAAATGGTAATTTTCGGTGAAAT
1 CGGGGGTAAAATGGTAATTTTAAAAG-ATT
* *
7968676 CGGGGTTAAAAATGGT-ATTTTAAAAGCTT
1 CGGGGGT-AAAATGGTAATTTTAAAAGATT
**** *
7968705 CGGGGGTAAAATGGTAATTTTCGGTGAAAT
1 CGGGGGTAAAATGGTAATTTTAAAAG-ATT
*
7968735 CGGGGTTAAAAATGG-AATTTTAAAAGATT
1 CGGGGGT-AAAATGGTAATTTTAAAAGATT
* *
7968764 CGGGGGGTAAAATGGTAATTTTTGAAAGTTT
1 C-GGGGGTAAAATGGTAA-TTTTAAAAGATT
* * *
7968795 TGGGGTTAAAAT-GTAATTTTGGAAAAGTTT
1 CGGGGGTAAAATGGTAATTTT--AAAAGATT
* *
7968825 C-GGGGTCAAAAT-ATAATTTTGAAAAAGTTT
1 CGGGGGT-AAAATGGTAATTTT--AAAAGATT
7968855 CGGGG
1 CGGGG
7968860 TCAAAATATA
Statistics
Matches: 263, Mismatches: 76, Indels: 41
0.69 0.20 0.11
Matches are distributed among these distances:
27 7 0.03
28 37 0.14
29 61 0.23
30 110 0.42
31 48 0.18
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.32
Consensus pattern (29 bp):
CGGGGGTAAAATGGTAATTTTAAAAGATT
Found at i:7968807 original size:59 final size:57
Alignment explanation
Indices: 7968470--7968790 Score: 421
Period size: 59 Copynumber: 5.5 Consensus size: 57
7968460 TATGGACACC
* * * *
7968470 CGGGGGAAAAATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATGTTAGAAGTTT
1 CGGGGGTAAAATGGTAATTTT-G-TGAAATCGGGGTTAAAAATGGAATTTTAAAAGCTT
* * *
7968529 TGGGGGTAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTT-AAAGTTT
1 CGGGGGTAAAATGGTAA-TTTTG-TGAAATCGGGGTTAAAAATGGAATTTTAAAAGCTT
** *
7968587 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACAGTATTTTAAAAGCTT
1 CGGGGGTAAAATGGTAATTTT--GTGAAATCGGGGTTAAAAATGGAATTTTAAAAGCTT
*
7968646 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGTATTTTAAAAGCTT
1 CGGGGGTAAAATGGTAATTTT--GTGAAATCGGGGTTAAAAATGGAATTTTAAAAGCTT
*
7968705 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATT
1 CGGGGGTAAAATGGTAATTTT--GTGAAATCGGGGTTAAAAATGGAATTTTAAAAGCTT
7968764 CGGGGGGTAAAATGGTAATTTT-TGAAA
1 C-GGGGGTAAAATGGTAATTTTGTGAAA
7968791 GTTTTGGGGT
Statistics
Matches: 242, Mismatches: 15, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
57 9 0.04
58 45 0.19
59 164 0.68
60 24 0.10
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (57 bp):
CGGGGGTAAAATGGTAATTTTGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGCTT
Found at i:7968813 original size:59 final size:56
Alignment explanation
Indices: 7968470--7968829 Score: 368
Period size: 59 Copynumber: 6.1 Consensus size: 56
7968460 TATGGACACC
* * * *
7968470 CGGGGGAAAAATGGTAATTTTCGATGAAATCGGGGTTAAAAATGGAATGTTAGAAGTTT
1 CGGGGGTAAAATGGTAATTTT---TGAAATCGGGGTTAAAAATGTAATTTTAAAAGTTT
* * *
7968529 TGGGGGTAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTT-AAAGTTT
1 CGGGGGTAAAATGGTAA-TTTT--TGAAATCGGGGTTAAAAATGTAATTTTAAAAGTTT
* *
7968587 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACAGT-ATTTTAAAAGCTT
1 CGGGGGTAAAATGGTAATTTT---TGAAATCGGGGTTAAAAA-TGTAATTTTAAAAGTTT
*
7968646 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGT-ATTTTAAAAGCTT
1 CGGGGGTAAAATGGTAATTTT---TGAAATCGGGGTTAAAAAT-GTAATTTTAAAAGTTT
* *
7968705 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATT
1 CGGGGGTAAAATGGTAATTTT---TGAAATCGGGGTTAAAAATGTAATTTTAAAAGTTT
*
7968764 CGGGGGGTAAAATGGTAATTTTTGAAAGTTTTGGGGTT-AAAATGTAATTTTGGAAAAGTTT
1 C-GGGGGTAAAATGGTAATTTTTGAAA---TCGGGGTTAAAAATGTAATTTT--AAAAGTTT
7968825 CGGGG
1 CGGGG
7968830 TCAAAATATA
Statistics
Matches: 272, Mismatches: 17, Indels: 23
0.87 0.05 0.07
Matches are distributed among these distances:
57 9 0.03
58 46 0.17
59 174 0.64
60 35 0.13
61 8 0.03
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (56 bp):
CGGGGGTAAAATGGTAATTTTTGAAATCGGGGTTAAAAATGTAATTTTAAAAGTTT
Found at i:7968860 original size:30 final size:30
Alignment explanation
Indices: 7968779--7968962 Score: 262
Period size: 30 Copynumber: 6.1 Consensus size: 30
7968769 GGTAAAATGG
* * * *
7968779 TAATTTTTG-AAAGTTTTGGGGTTAAAATG
1 TAATTTTGGAAAAGTTTCGGGGTCAAAATA
7968808 TAATTTTGGAAAAGTTTCGGGGTCAAAATA
1 TAATTTTGGAAAAGTTTCGGGGTCAAAATA
*
7968838 TAATTTTGAAAAAGTTTCGGGGTCAAAATA
1 TAATTTTGGAAAAGTTTCGGGGTCAAAATA
* *
7968868 TAATTTTTGGAAAAGTTTTGGGGTTAAAATA
1 TAA-TTTTGGAAAAGTTTCGGGGTCAAAATA
* *
7968899 TAATTTTGGAAAAGTTTCAGGGTTAAAATA
1 TAATTTTGGAAAAGTTTCGGGGTCAAAATA
*
7968929 TAATTTTGAAAAAGTTTCGGGGTCAAAATA
1 TAATTTTGGAAAAGTTTCGGGGTCAAAATA
7968959 TAAT
1 TAAT
7968963 ATCTAGATTG
Statistics
Matches: 140, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
29 8 0.06
30 105 0.75
31 27 0.19
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.38
Consensus pattern (30 bp):
TAATTTTGGAAAAGTTTCGGGGTCAAAATA
Found at i:7968879 original size:61 final size:60
Alignment explanation
Indices: 7968788--7968962 Score: 269
Period size: 61 Copynumber: 2.9 Consensus size: 60
7968778 GTAATTTTTG
* *
7968788 AAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTCGGGGTCAAAATATAATTTTGAA
1 AAAGTTTCGGGGTTAAAATATAATTTTGGAAAAGTTTCGGGGTCAAAATATAATTTTGAA
* * * *
7968848 AAAGTTTCGGGGTCAAAATATAATTTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTGGA
1 AAAGTTTCGGGGTTAAAATATAA-TTTTGGAAAAGTTTCGGGGTCAAAATATAATTTTGAA
* *
7968909 AAAGTTTCAGGGTTAAAATATAATTTTGAAAAAGTTTCGGGGTCAAAATATAAT
1 AAAGTTTCGGGGTTAAAATATAATTTTGGAAAAGTTTCGGGGTCAAAATATAAT
7968963 ATCTAGATTG
Statistics
Matches: 103, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
60 48 0.47
61 55 0.53
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.36
Consensus pattern (60 bp):
AAAGTTTCGGGGTTAAAATATAATTTTGGAAAAGTTTCGGGGTCAAAATATAATTTTGAA
Found at i:7968903 original size:91 final size:89
Alignment explanation
Indices: 7968779--7968962 Score: 323
Period size: 91 Copynumber: 2.0 Consensus size: 89
7968769 GGTAAAATGG
* *
7968779 TAATTTTTGAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTCGGGGTCAAAATATAATTT
1 TAATTTTTGAAAGTTTTGGGGTTAAAATATAATTTTGGAAAAGTTTCAGGGTCAAAATATAATTT
7968844 TGAAAAAGTTTCGGGGTCAAAATA
66 TGAAAAAGTTTCGGGGTCAAAATA
*
7968868 TAATTTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTGGAAAAGTTTCAGGGTTAAAATATAAT
1 TAATTTTT-G-AAAGTTTTGGGGTTAAAATATAATTTTGGAAAAGTTTCAGGGTCAAAATATAAT
7968933 TTTGAAAAAGTTTCGGGGTCAAAATA
64 TTTGAAAAAGTTTCGGGGTCAAAATA
7968959 TAAT
1 TAAT
7968963 ATCTAGATTG
Statistics
Matches: 90, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
89 8 0.09
90 1 0.01
91 81 0.90
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.38
Consensus pattern (89 bp):
TAATTTTTGAAAGTTTTGGGGTTAAAATATAATTTTGGAAAAGTTTCAGGGTCAAAATATAATTT
TGAAAAAGTTTCGGGGTCAAAATA
Found at i:7969303 original size:162 final size:162
Alignment explanation
Indices: 7969058--7969375 Score: 489
Period size: 162 Copynumber: 2.0 Consensus size: 162
7969048 ACCCATTTGA
*
7969058 AAACCTTGAAAAATTTTAGGACCAATTTTGTAATTAAATAATAGTTGATTTAAGGATTAAATTAA
1 AAACCTTGAAAAATTTTAGGACCAATTTCGTAATTAAATAATAGTTGATTTAAGGATTAAATTAA
* * *
7969123 AACAAATTAGAAATAAAAAGGACTAAATACAGAAATAATCCAAAAAGATGACACGTGGCAACCTC
66 AACAAATTAAAAATAAAAAGGACTAAATACAAAAATAATCC-AAAACATGACACGTGGCAACCTC
*
7969188 TGGTGCAGTCAAACAGTCAAAGGACTAGTTTAT
130 TGGTACAGTCAAACAGTCAAAGGACTAGTTTAT
* *
7969221 AAACCTTGAAAAATTATT-GGGCCAATTTCGTAATTAAA-ACTAAGTTGATTT-AGGATTAAATT
1 AAACCTTGAAAAATT-TTAGGACCAATTTCGTAATTAAATAAT-AGTTGATTTAAGGATTAAATT
* *
7969283 AAAACAAATTAAAAATAAAAAGGACTAAATGCAAAAATAATCCAAAACATGACACGTGGCAATCT
64 AAAACAAATTAAAAATAAAAAGGACTAAATACAAAAATAATCCAAAACATGACACGTGGCAACCT
* *
7969348 CTGGTATAGTCCAACAGTCAAAGGACTA
129 CTGGTACAGTCAAACAGTCAAAGGACTA
7969376 AATTGAAAAG
Statistics
Matches: 142, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
161 45 0.32
162 53 0.37
163 42 0.30
164 2 0.01
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (162 bp):
AAACCTTGAAAAATTTTAGGACCAATTTCGTAATTAAATAATAGTTGATTTAAGGATTAAATTAA
AACAAATTAAAAATAAAAAGGACTAAATACAAAAATAATCCAAAACATGACACGTGGCAACCTCT
GGTACAGTCAAACAGTCAAAGGACTAGTTTAT
Found at i:7969439 original size:161 final size:160
Alignment explanation
Indices: 7969109--7969459 Score: 379
Period size: 161 Copynumber: 2.2 Consensus size: 160
7969099 TAGTTGATTT
* * *
7969109 AAGGATTAAATTAAAACAAATTAGAAATAAAAAGGACTAAATACAGAAATAATCCAAAAAGATGA
1 AAGGATTAAATTAAAACAAATTAAAAATAAAAAGGACTAAATACAAAAATAATCCAAAAACATGA
* * * * **
7969174 CACGTGGCAACCTCTGGTGCAGTCAAACAGTCAAAGGACTAGTTTATAAACCTTGAAAAATTATT
66 CACGTGGCAACCTCTGGTACAGTCAAACAGTCAAAGGACTAATTGATAAACATT-AAAAATTACA
* * * ** *
7969239 GGGCCAATTTCGTAATTAAAACTAAGTTGATT
130 GGGCAAATTACATAATTAAAAC-AAGCAGATA
* *
7969271 TAGGATTAAATTAAAACAAATTAAAAATAAAAAGGACTAAATGCAAAAATAATCC-AAAACATGA
1 AAGGATTAAATTAAAACAAATTAAAAATAAAAAGGACTAAATACAAAAATAATCCAAAAACATGA
* * *
7969335 CACGTGGCAATCTCTGGTATAGTCCAACAGTCAAAGGACTAAATTGA-AAAGCAATT-AAAATTA
66 CACGTGGCAACCTCTGGTACAGTCAAACAGTCAAAGGACT-AATTGATAAA-C-ATTAAAAATTA
*
7969398 CAGGGCAAAATTACAAATAATTAAAA-ATGCAGA-A
128 CAGGGC-AAATTAC--ATAATTAAAACAAGCAGATA
* * *
7969432 AAGGATTAAATTGAAGCAAATAAAAAAT
1 AAGGATTAAATTAAAACAAATTAAAAAT
7969460 GCGGAAGGAC
Statistics
Matches: 158, Mismatches: 25, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
161 82 0.52
162 65 0.41
163 2 0.01
164 9 0.06
ACGTcount: A:0.50, C:0.13, G:0.15, T:0.23
Consensus pattern (160 bp):
AAGGATTAAATTAAAACAAATTAAAAATAAAAAGGACTAAATACAAAAATAATCCAAAAACATGA
CACGTGGCAACCTCTGGTACAGTCAAACAGTCAAAGGACTAATTGATAAACATTAAAAATTACAG
GGCAAATTACATAATTAAAACAAGCAGATA
Found at i:7970268 original size:26 final size:27
Alignment explanation
Indices: 7970205--7970270 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 27
7970195 ATATTAATAA
*
7970205 TATTAATGTTA-TTATTAAAACGTTAT
1 TATTAATGTTATTTAATAAAACGTTAT
* *
7970231 TAAT-ATTTTATTTAATAAAAC-TTAT
1 TATTAATGTTATTTAATAAAACGTTAT
*
7970256 TATTAATGGTATTTA
1 TATTAATGTTATTTA
7970271 CAGAGTCAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
25 12 0.38
26 20 0.62
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (27 bp):
TATTAATGTTATTTAATAAAACGTTAT
Found at i:7970932 original size:17 final size:17
Alignment explanation
Indices: 7970912--7970989 Score: 90
Period size: 17 Copynumber: 4.8 Consensus size: 17
7970902 TTTTTTTATT
*
7970912 AATTTAAATTTTAATTA
1 AATTTAAATTTAAATTA
**
7970929 AATTTAAATTTAAAGCA
1 AATTTAAATTTAAATTA
7970946 AATTTAAATTT---TTA
1 AATTTAAATTTAAATTA
* *
7970960 CATTTAAATTTAAAATA
1 AATTTAAATTTAAATTA
7970977 AATTTAAATTTAA
1 AATTTAAATTTAA
7970990 CCATGAATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
14 11 0.22
17 39 0.78
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (17 bp):
AATTTAAATTTAAATTA
Found at i:7970970 original size:48 final size:48
Alignment explanation
Indices: 7970913--7971006 Score: 136
Period size: 48 Copynumber: 1.9 Consensus size: 48
7970903 TTTTTTATTA
* * *
7970913 ATTTAAATTTTAATTAAATTTAAATTTAAAGCA-AATTTAAATTTTTAC
1 ATTTAAATTTAAAATAAATTTAAATTT-AACCAGAATTTAAATTTTTAC
7970961 ATTTAAATTTAAAATAAATTTAAATTTAACCATGAATTTAAATTTT
1 ATTTAAATTTAAAATAAATTTAAATTTAACCA-GAATTTAAATTTT
7971007 GTTCAAAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
47 4 0.10
48 25 0.61
49 12 0.29
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (48 bp):
ATTTAAATTTAAAATAAATTTAAATTTAACCAGAATTTAAATTTTTAC
Found at i:7971000 original size:18 final size:17
Alignment explanation
Indices: 7970912--7971005 Score: 86
Period size: 17 Copynumber: 5.6 Consensus size: 17
7970902 TTTTTTTATT
* *
7970912 AATTTAAATTTTAATTA
1 AATTTAAATTTAAAATA
**
7970929 AATTTAAATTTAAAGCA
1 AATTTAAATTTAAAATA
*
7970946 AATTTAAATTT---TTA
1 AATTTAAATTTAAAATA
*
7970960 CATTTAAATTTAAAATA
1 AATTTAAATTTAAAATA
* *
7970977 AATTTAAATTTAACCATG
1 AATTTAAATTTAA-AATA
7970995 AATTTAAATTT
1 AATTTAAATTT
7971006 TGTTCAAAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
14 11 0.17
17 39 0.62
18 13 0.21
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:7971005 original size:6 final size:6
Alignment explanation
Indices: 7970912--7970989 Score: 72
Period size: 6 Copynumber: 13.2 Consensus size: 6
7970902 TTTTTTTATT
* **
7970912 AATTTA AATTTT AA-TTA AATTTA AATTTA AA-GCA AATTTA AATTTTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AA--TTTA
* *
7970960 CATTTA AATTTA AA-ATA AATTTA AATTTA A
1 AATTTA AATTTA AATTTA AATTTA AATTTA A
7970990 CCATGAATTT
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
5 11 0.19
6 41 0.72
8 5 0.09
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (6 bp):
AATTTA
Found at i:7971513 original size:68 final size:68
Alignment explanation
Indices: 7971322--7972175 Score: 1591
Period size: 68 Copynumber: 12.5 Consensus size: 68
7971312 AAGACTTTGC
* * * * *
7971322 TATCCAACTTTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCGGAGGTAAAGAC
1 TATCC-ACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGAC
7971387 GTGT
65 GTGT
*
7971391 TATCCACTCTACTTCAATTTCAAAGGGGATGACATTGCTCTTACTTCAATTTCAGAGATGAAGAC
1 TATCCACTCTACTTCAATTTC-AAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGAC
7971456 GTGT
65 GTGT
* *
7971460 TATCCACTCTATTTCAATTTCAAGGGGATGATGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
7971525 TGT
66 TGT
*
7971528 TATCCACTCTACTTCAATTTCAAGGGGATGGCGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
7971593 TGT
66 TGT
7971596 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
7971661 TGT
66 TGT
7971664 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
7971729 TGT
66 TGT
7971732 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
7971797 TGT
66 TGT
7971800 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
7971865 TGT
66 TGT
7971868 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
7971933 TGT
66 TGT
* *
7971936 TATCCACTCTACTTCAATTTCAAGGGGATGATGTTGCTCTTACTTCAATTTCAAAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
7972001 TGT
66 TGT
7972004 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
7972069 TGT
66 TGT
7972072 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
7972137 TGT
66 TGT
7972140 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTG
1 TATCCACTCTACTTCAATTTCAAGGGGATGACGTTG
7972176 GGGCCTGCAG
Statistics
Matches: 767, Mismatches: 17, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
68 700 0.91
69 67 0.09
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (68 bp):
TATCCACTCTACTTCAATTTCAAGGGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACG
TGT
Found at i:7984138 original size:29 final size:29
Alignment explanation
Indices: 7984106--7984331 Score: 133
Period size: 29 Copynumber: 7.7 Consensus size: 29
7984096 TGGACACCCG
* *
7984106 GGGGCAAAATGGTAATTTTTGGTGAAATC
1 GGGGTAAAATGGTAATTTTAGGTGAAATC
** **
7984135 GGGGTTAAAATGG-AATTTTAGAAG-TTTC
1 GGGG-TAAAATGGTAATTTTAGGTGAAATC
*
7984163 AGGGGTAAAATGGTAATTTTCGGTGAAATC
1 -GGGGTAAAATGGTAATTTTAGGTGAAATC
*** **
7984193 GGGGTTAAAAATGGT-ATTTTAAAAG-CTTC
1 GGGG-T-AAAATGGTAATTTTAGGTGAAATC
*
7984222 GGGGGTAAAATGGTAATTTTCGGTGAAATC
1 -GGGGTAAAATGGTAATTTTAGGTGAAATC
*** **
7984252 GGGGTTAAAAATGGT-ATTTTAAAAG-CTTC
1 GGGG-T-AAAATGGTAATTTTAGGTGAAATC
* *
7984281 AGGGGTAAAATGATAATTTTCGGTGAAATC
1 -GGGGTAAAATGGTAATTTTAGGTGAAATC
7984311 GGGGTTAAAAATGG-AATTTTA
1 GGGG-T-AAAATGGTAATTTTA
7984332 AAAGATTTGG
Statistics
Matches: 143, Mismatches: 38, Indels: 31
0.67 0.18 0.15
Matches are distributed among these distances:
28 25 0.17
29 54 0.38
30 42 0.29
31 22 0.15
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (29 bp):
GGGGTAAAATGGTAATTTTAGGTGAAATC
Found at i:7984233 original size:59 final size:59
Alignment explanation
Indices: 7984104--7984359 Score: 397
Period size: 59 Copynumber: 4.4 Consensus size: 59
7984094 TATGGACACC
* * * *
7984104 CGGGGGCAAAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATGGAATTTTAGAAGTTT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGCTT
* *
7984162 CAGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGTATTTTAAAAGCTT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGCTT
*
7984221 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGTATTTTAAAAGCTT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGCTT
* * *
7984280 CAGGGGTAAAATGATAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGCTT
* *
7984339 TGGGGGTAAAACGGTAATTTT
1 CGGGGGTAAAATGGTAATTTT
7984360 TGAAAGTTTT
Statistics
Matches: 182, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
58 34 0.19
59 148 0.81
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.32
Consensus pattern (59 bp):
CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGCTT
Found at i:7984345 original size:30 final size:28
Alignment explanation
Indices: 7984311--7984489 Score: 90
Period size: 30 Copynumber: 6.0 Consensus size: 28
7984301 CGGTGAAATC
7984311 GGGGTTAAAAATGGAATTTTAAAAGATTTG
1 GGGGTT-AAAATGGAATTTTAAAAG-TTTG
* * *
7984341 GGGG-TAAAACGGTAATTTTTGAAAGTTTT
1 GGGGTTAAAATGG-AA-TTTTAAAAGTTTG
* * *
7984370 GGGGTTAAAATGTAATTTTGGATAAGTTTT
1 GGGGTTAAAATGGAATTTT--AAAAGTTTG
* ** *
7984400 GGGGTCAAAATATAATTTTGAAAAAGTTTC
1 GGGGTTAAAATGGAATTTT--AAAAGTTTG
* ** *
7984430 GGGGTCAAAATATAATTTTTGGAAAAGTTTT
1 GGGGTTAAAATGGAA-TTTT--AAAAGTTTG
**
7984461 GGGGTTAAAATATAATTTTGGAAAAGTTT
1 GGGGTTAAAATGGAATTTT--AAAAGTTT
7984490 CAGGGTCAAA
Statistics
Matches: 128, Mismatches: 15, Indels: 12
0.83 0.10 0.08
Matches are distributed among these distances:
28 10 0.08
29 12 0.09
30 79 0.62
31 27 0.21
ACGTcount: A:0.36, C:0.02, G:0.25, T:0.37
Consensus pattern (28 bp):
GGGGTTAAAATGGAATTTTAAAAGTTTG
Found at i:7984404 original size:118 final size:114
Alignment explanation
Indices: 7984104--7984418 Score: 366
Period size: 118 Copynumber: 2.7 Consensus size: 114
7984094 TATGGACACC
* * * *
7984104 CGGGGGCAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGAATTTTAGAAGTTTCAGGGGT
1 CGGGGGTAAAACGGTAA-TTTT-GTGAAATCGGGGTTAAAATGTAATTTTAAAAGTTT-AGGGGT
* * *
7984169 AAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGTATTTTAAAAGCTT
63 AAAATGATAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATT
* *
7984221 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAATGGT-ATTTTAAAAGCTTCAGGG
1 CGGGGGTAAAACGGTAATTTT--GTGAAATCGGGGTT-AAAAT-GTAATTTTAAAAG-TTTAGGG
7984285 GTAAAATGATAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATT
61 GTAAAATGATAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATT
* * * *
7984339 TGGGGGTAAAACGGTAATTTT-TGAAAGTTTTGGGGTTAAAATGTAATTTTGGATAAGTTTTGGG
1 CGGGGGTAAAACGGTAATTTTGTGAAA---TCGGGGTTAAAATGTAATTTT--AAAAGTTTAGGG
7984403 GTCAAAAT-ATAATTTT
61 GT-AAAATGATAATTTT
7984419 GAAAAAGTTT
Statistics
Matches: 174, Mismatches: 13, Indels: 21
0.84 0.06 0.10
Matches are distributed among these distances:
115 5 0.03
116 6 0.03
117 41 0.24
118 110 0.63
119 12 0.07
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.34
Consensus pattern (114 bp):
CGGGGGTAAAACGGTAATTTTGTGAAATCGGGGTTAAAATGTAATTTTAAAAGTTTAGGGGTAAA
ATGATAATTTTCGGTGAAATCGGGGTTAAAAATGGAATTTTAAAAGATT
Found at i:7984471 original size:61 final size:61
Alignment explanation
Indices: 7984362--7984506 Score: 220
Period size: 61 Copynumber: 2.4 Consensus size: 61
7984352 GTAATTTTTG
* * * *
7984362 AAAGTTTTGGGGTTAAAATGTAA-TTTTGGATAAGTTTTGGGGTCAAAATATAATTTTGAA
1 AAAGTTTCGGGGTCAAAATATAATTTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGAA
* *
7984422 AAAGTTTCGGGGTCAAAATATAATTTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTGGA
1 AAAGTTTCGGGGTCAAAATATAATTTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGAA
*
7984483 AAAGTTTCAGGGTCAAAATATAAT
1 AAAGTTTCGGGGTCAAAATATAAT
7984507 ATCTAGATTG
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
60 20 0.26
61 57 0.74
ACGTcount: A:0.37, C:0.03, G:0.22, T:0.37
Consensus pattern (61 bp):
AAAGTTTCGGGGTCAAAATATAATTTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGAA
Found at i:7984501 original size:30 final size:30
Alignment explanation
Indices: 7984353--7984506 Score: 211
Period size: 30 Copynumber: 5.1 Consensus size: 30
7984343 GGTAAAACGG
* * *
7984353 TAATTTTTG-AAAGTTTTGGGGTTAAAATG
1 TAATTTTGGAAAAGTTTTGGGGTCAAAATA
*
7984382 TAATTTTGGATAAGTTTTGGGGTCAAAATA
1 TAATTTTGGAAAAGTTTTGGGGTCAAAATA
* *
7984412 TAATTTTGAAAAAGTTTCGGGGTCAAAATA
1 TAATTTTGGAAAAGTTTTGGGGTCAAAATA
*
7984442 TAATTTTTGGAAAAGTTTTGGGGTTAAAATA
1 TAA-TTTTGGAAAAGTTTTGGGGTCAAAATA
**
7984473 TAATTTTGGAAAAGTTTCAGGGTCAAAATA
1 TAATTTTGGAAAAGTTTTGGGGTCAAAATA
7984503 TAAT
1 TAAT
7984507 ATCTAGATTG
Statistics
Matches: 110, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
29 8 0.07
30 75 0.68
31 27 0.25
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.39
Consensus pattern (30 bp):
TAATTTTGGAAAAGTTTTGGGGTCAAAATA
Found at i:7984847 original size:162 final size:162
Alignment explanation
Indices: 7984606--7984919 Score: 472
Period size: 162 Copynumber: 1.9 Consensus size: 162
7984596 ATTTGAAAAT
*
7984606 CTTGAAAAATTTTAGGACCAATTTTGTAATTAAATAATAGTTGATTTAAGGATTAAATTAAAACA
1 CTTGAAAAATTTTAGGACCAATTTCGTAATTAAATAATAGTTGATTTAAGGATTAAATTAAAACA
* * *
7984671 AATTAGAAATAAAAAAGACTAAATACAGAAATAATCCAAAAAGATGACACGTGGCAACCTCTGGT
66 AATTAAAAATAAAAAAGACTAAATACAAAAATAATCC-AAAACATGACACGTGGCAACCTCTGGT
*
7984736 GCAGTCAAACAGTCAAAGGACTAGTTTATAAAC
130 ACAGTCAAACAGTCAAAGGACTAGTTTATAAAC
* *
7984769 CTTGAAAAATTATT-GGGCCAATTTCGTAATTAAA-ACTAAGTTGATTT-AGGATTAAATTAAAA
1 CTTGAAAAATT-TTAGGACCAATTTCGTAATTAAATAAT-AGTTGATTTAAGGATTAAATTAAAA
* * *
7984831 CAAATTAAAAATAAAAAGGACTAAATGCAAAAATAATCCAAAACATGACACGTGGCAATCTCTGG
64 CAAATTAAAAATAAAAAAGACTAAATACAAAAATAATCCAAAACATGACACGTGGCAACCTCTGG
* *
7984896 TATAGTCCAACAGTCAAAGGACTA
129 TACAGTCAAACAGTCAAAGGACTA
7984920 AATTGAAAAG
Statistics
Matches: 137, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
161 45 0.33
162 52 0.38
163 38 0.28
164 2 0.01
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (162 bp):
CTTGAAAAATTTTAGGACCAATTTCGTAATTAAATAATAGTTGATTTAAGGATTAAATTAAAACA
AATTAAAAATAAAAAAGACTAAATACAAAAATAATCCAAAACATGACACGTGGCAACCTCTGGTA
CAGTCAAACAGTCAAAGGACTAGTTTATAAAC
Found at i:7985813 original size:26 final size:27
Alignment explanation
Indices: 7985750--7985815 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 27
7985740 ATATTAATAA
*
7985750 TATTAATGTTA-TTATTAAAACGTTAT
1 TATTAATGTTATTTAATAAAACGTTAT
* *
7985776 TAAT-ATTTTATTTAATAAAAC-TTAT
1 TATTAATGTTATTTAATAAAACGTTAT
*
7985801 TATTAATGGTATTTA
1 TATTAATGTTATTTA
7985816 CAGAGTCAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
25 12 0.38
26 20 0.62
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (27 bp):
TATTAATGTTATTTAATAAAACGTTAT
Found at i:7986479 original size:17 final size:17
Alignment explanation
Indices: 7986459--7986536 Score: 90
Period size: 17 Copynumber: 4.8 Consensus size: 17
7986449 TTTTTTTATT
*
7986459 AATTTAAATTTTAATTA
1 AATTTAAATTTAAATTA
**
7986476 AATTTAAATTTAAAGCA
1 AATTTAAATTTAAATTA
7986493 AATTTAAATTT---TTA
1 AATTTAAATTTAAATTA
* *
7986507 CATTTAAATTTAAAATA
1 AATTTAAATTTAAATTA
7986524 AATTTAAATTTAA
1 AATTTAAATTTAA
7986537 CCATGAATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
14 11 0.22
17 39 0.78
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (17 bp):
AATTTAAATTTAAATTA
Found at i:7986547 original size:18 final size:17
Alignment explanation
Indices: 7986459--7986552 Score: 86
Period size: 17 Copynumber: 5.6 Consensus size: 17
7986449 TTTTTTTATT
* *
7986459 AATTTAAATTTTAATTA
1 AATTTAAATTTAAAATA
**
7986476 AATTTAAATTTAAAGCA
1 AATTTAAATTTAAAATA
*
7986493 AATTTAAATTT---TTA
1 AATTTAAATTTAAAATA
*
7986507 CATTTAAATTTAAAATA
1 AATTTAAATTTAAAATA
* *
7986524 AATTTAAATTTAACCATG
1 AATTTAAATTTAA-AATA
7986542 AATTTAAATTT
1 AATTTAAATTT
7986553 TATTCAAAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
14 11 0.17
17 39 0.62
18 13 0.21
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:7986552 original size:6 final size:6
Alignment explanation
Indices: 7986459--7986536 Score: 72
Period size: 6 Copynumber: 13.2 Consensus size: 6
7986449 TTTTTTTATT
* **
7986459 AATTTA AATTTT AA-TTA AATTTA AATTTA AA-GCA AATTTA AATTTTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AA--TTTA
* *
7986507 CATTTA AATTTA AA-ATA AATTTA AATTTA A
1 AATTTA AATTTA AATTTA AATTTA AATTTA A
7986537 CCATGAATTT
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
5 11 0.19
6 41 0.72
8 5 0.09
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (6 bp):
AATTTA
Found at i:7986554 original size:48 final size:48
Alignment explanation
Indices: 7986460--7986553 Score: 136
Period size: 48 Copynumber: 1.9 Consensus size: 48
7986450 TTTTTTATTA
* * *
7986460 ATTTAAATTTTAATTAAATTTAAATTTAAAGCAAATTTAAATTTTTAC
1 ATTTAAATTTAAAATAAATTTAAATTTAAACCAAATTTAAATTTTTAC
7986508 ATTTAAATTTAAAATAAATTTAAATTT-AACCATGAATTTAAATTTT
1 ATTTAAATTTAAAATAAATTTAAATTTAAACCA--AATTTAAATTTT
7986554 ATTCAAAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
47 4 0.10
48 25 0.61
49 12 0.29
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (48 bp):
ATTTAAATTTAAAATAAATTTAAATTTAAACCAAATTTAAATTTTTAC
Found at i:7987507 original size:14 final size:13
Alignment explanation
Indices: 7987484--7987513 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
7987474 GATCATAACT
7987484 AAAAGTTTGTTTC
1 AAAAGTTTGTTTC
7987497 AAAACGTTTGTTTC
1 AAAA-GTTTGTTTC
7987511 AAA
1 AAA
7987514 TGTTATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (13 bp):
AAAAGTTTGTTTC
Found at i:7992407 original size:27 final size:28
Alignment explanation
Indices: 7992369--7992425 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
7992359 TGAGCTTGTT
7992369 AATGATGAAAGGAAA-GCCTTTATGGCA
1 AATGATGAAAGGAAATGCCTTTATGGCA
* *
7992396 AATGGTGAAAGGAAATGCCTTTGTGGCA
1 AATGATGAAAGGAAATGCCTTTATGGCA
7992424 AA
1 AA
7992426 GATCGGTACG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 14 0.52
28 13 0.48
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.23
Consensus pattern (28 bp):
AATGATGAAAGGAAATGCCTTTATGGCA
Found at i:7994173 original size:34 final size:35
Alignment explanation
Indices: 7994129--7994198 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
7994119 TCGCTTGCTA
* *
7994129 AGTTGTAACTATC-TAGTGTTATTCAAATATAAAG
1 AGTTGCAACTATCTTAGTATTATTCAAATATAAAG
*
7994163 AGTTGCAACTATCTTAGTATTATTCAAGTATAAAG
1 AGTTGCAACTATCTTAGTATTATTCAAATATAAAG
7994198 A
1 A
7994199 TTTTTTTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 12 0.38
35 20 0.62
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (35 bp):
AGTTGCAACTATCTTAGTATTATTCAAATATAAAG
Found at i:8000014 original size:10 final size:9
Alignment explanation
Indices: 7999989--8000013 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7999979 ATTGTTCAAG
7999989 AAAAAAAGC
1 AAAAAAAGC
7999998 AAAAAAAGC
1 AAAAAAAGC
8000007 AAAAAAA
1 AAAAAAA
8000014 AACATGGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAGC
Found at i:8001210 original size:24 final size:24
Alignment explanation
Indices: 8001182--8001229 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
8001172 ACTTGATGAA
8001182 ACTGCTGTTTATTTAGAAATAAGG
1 ACTGCTGTTTATTTAGAAATAAGG
8001206 ACTGCTGTTTATTTAGAAATAAGG
1 ACTGCTGTTTATTTAGAAATAAGG
8001230 TACATTAGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (24 bp):
ACTGCTGTTTATTTAGAAATAAGG
Found at i:8005679 original size:23 final size:22
Alignment explanation
Indices: 8005652--8005710 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
8005642 TTATCTATCT
*
8005652 TTGTGGCATGCTTTTCTTCTGT-
1 TTGTGGCACGCTTTTCTT-TGTC
8005674 TATGTGGCACGCTTTTTCTTTGTC
1 T-TGTGGCACGC-TTTTCTTTGTC
8005698 TTGTGGCACGCTT
1 TTGTGGCACGCTT
8005711 CTGCCTTATG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 3 0.09
23 22 0.67
24 8 0.24
ACGTcount: A:0.07, C:0.20, G:0.24, T:0.49
Consensus pattern (22 bp):
TTGTGGCACGCTTTTCTTTGTC
Found at i:8011220 original size:19 final size:19
Alignment explanation
Indices: 8011190--8011236 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 19
8011180 GATAACAAAA
8011190 AATATGCTTAACCCCATTTC
1 AATAT-CTTAACCCCATTTC
8011210 AATATCTTAACCCCATTTC
1 AATATCTTAACCCCATTTC
*
8011229 AATGTCTT
1 AATATCTT
8011237 CAGGTTGGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 21 0.81
20 5 0.19
ACGTcount: A:0.30, C:0.28, G:0.04, T:0.38
Consensus pattern (19 bp):
AATATCTTAACCCCATTTC
Found at i:8014879 original size:11 final size:11
Alignment explanation
Indices: 8014865--8014896 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
8014855 AGCAAAAGTT
8014865 AAAATGGTGGA
1 AAAATGGTGGA
8014876 AAAATGGTGGA
1 AAAATGGTGGA
8014887 AAAATGGTGG
1 AAAATGGTGG
8014897 CTAACGTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.38, T:0.19
Consensus pattern (11 bp):
AAAATGGTGGA
Found at i:8030330 original size:3 final size:3
Alignment explanation
Indices: 8030322--8030350 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
8030312 TGTTTTAAGC
8030322 TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8030351 ATTAATTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:8030956 original size:12 final size:11
Alignment explanation
Indices: 8030928--8031017 Score: 65
Period size: 11 Copynumber: 8.0 Consensus size: 11
8030918 TGATTTGTTA
8030928 AATTTTAAATT
1 AATTTTAAATT
8030939 AATTTTAAATT
1 AATTTTAAATT
*
8030950 CATTTTTAAATT
1 -AATTTTAAATT
* *
8030962 TATCTTAAATTT
1 AATTTTAAA-TT
* **
8030974 AAATTTATTTT
1 AATTTTAAATT
*
8030985 AAATTTAAACTT
1 AATTTTAAA-TT
*
8030997 AA-TTTAAAAT
1 AATTTTAAATT
*
8031007 AATATTAAATT
1 AATTTTAAATT
8031018 TAATAAATTA
Statistics
Matches: 61, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
10 3 0.05
11 38 0.62
12 20 0.33
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.52
Consensus pattern (11 bp):
AATTTTAAATT
Found at i:8030969 original size:29 final size:29
Alignment explanation
Indices: 8030925--8031020 Score: 99
Period size: 28 Copynumber: 3.3 Consensus size: 29
8030915 TTTTGATTTG
8030925 TTAAATTTTAAA-TTAATTTTAAATTCATTT
1 TTAAA-TTTAAACTTAATTTTAAATTCA-TT
* * *
8030955 TTAAATTT-ATCTTAAATTTAAATTTATT
1 TTAAATTTAAACTTAATTTTAAATTCATT
* * *
8030983 TTAAATTTAAACTTAA-TTTAAAATAATA
1 TTAAATTTAAACTTAATTTTAAATTCATT
8031011 TTAAATTTAA
1 TTAAATTTAA
8031021 TAAATTAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
28 30 0.53
29 22 0.39
30 5 0.09
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (29 bp):
TTAAATTTAAACTTAATTTTAAATTCATT
Found at i:8030976 original size:17 final size:17
Alignment explanation
Indices: 8030954--8030993 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
8030944 TAAATTCATT
8030954 TTTAAATTTATCTTAAA
1 TTTAAATTTATCTTAAA
*
8030971 TTTAAATTTATTTTAAA
1 TTTAAATTTATCTTAAA
8030988 TTTAAA
1 TTTAAA
8030994 CTTAATTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTAAATTTATCTTAAA
Found at i:8030980 original size:23 final size:23
Alignment explanation
Indices: 8030925--8031020 Score: 70
Period size: 23 Copynumber: 4.2 Consensus size: 23
8030915 TTTTGATTTG
*
8030925 TTAAATTTTAAATTAATTTTAAAT
1 TTAAA-TTTAAATTAATCTTAAAT
* ** *
8030949 TCATTTTTAAATTTATCTTAAAT
1 TTAAATTTAAATTAATCTTAAAT
** *
8030972 TTAAATTTATTTTAAAT-TTAAAC
1 TTAAATTTAAATT-AATCTTAAAT
* *
8030995 TT-AATTTAAAATAATATTAAAT
1 TTAAATTTAAATTAATCTTAAAT
8031017 TTAA
1 TTAA
8031021 TAAATTAAAA
Statistics
Matches: 53, Mismatches: 16, Indels: 7
0.70 0.21 0.09
Matches are distributed among these distances:
21 3 0.06
22 14 0.26
23 32 0.60
24 4 0.08
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (23 bp):
TTAAATTTAAATTAATCTTAAAT
Found at i:8031002 original size:17 final size:17
Alignment explanation
Indices: 8030966--8031004 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
8030956 TAAATTTATC
* *
8030966 TTAAATTTAAATTTATT
1 TTAAATTTAAACTTAAT
8030983 TTAAATTTAAACTTAAT
1 TTAAATTTAAACTTAAT
8031000 TTAAA
1 TTAAA
8031005 ATAATATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (17 bp):
TTAAATTTAAACTTAAT
Found at i:8031887 original size:20 final size:19
Alignment explanation
Indices: 8031845--8031895 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
8031835 TTAAATATGG
*
8031845 TAATAAATATTAAT-AATAA
1 TAAT-AATATAAATAAATAA
*
8031864 TAATAATAATAAATAAATAT
1 TAATAAT-ATAAATAAATAA
8031884 TAATAATATAAA
1 TAATAATATAAA
8031896 AAAGGGGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 3 0.11
19 14 0.50
20 11 0.39
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TAATAATATAAATAAATAA
Found at i:8032791 original size:162 final size:163
Alignment explanation
Indices: 8032602--8032947 Score: 482
Period size: 163 Copynumber: 2.1 Consensus size: 163
8032592 TTTAATTGGC
* * * *
8032602 TTTCAATTTAGTCCTATGACTGTTTGACTATACCAAAGGTTGCCACGTGTC-ATTTTTTGGCCTA
1 TTTCAAATTAGTCCTTTGACTGTTTGACTACACCAAAGGCTGCCACGTGTCGATTTTTTGGCCTA
*
8032666 TTTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAACTTTTATTT
66 TTTATGCATTTAATCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAACTTTTATTT
* *
8032731 AACTACAAAATTGG-CCCAATAATTTTTCAAGGT
131 AACTACAAAATTGGTCCCAA-AATTTTCCAAGAT
* * * *
8032764 TTAT-AAATTAGTCCTTTGACTGTTTGACTGCACTAGAGGCTGCCACGTGTCGTTTTTTTGGCCT
1 TT-TCAAATTAGTCCTTTGACTGTTTGACTACACCAAAGGCTGCCACGTGTCGATTTTTTGGCCT
** * *
8032828 ATTTATGCATTTAATCCTTTCTATTTTTAATTTATTTTAATTTTGTCCTTAAATTAACTTTTATT
65 ATTTATGCATTTAATCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAACTTTTATT
* * *
8032893 TAATTATAAAATTGGTCCGAAAATTTTCCAAGAT
130 TAACTACAAAATTGGTCCCAAAATTTTCCAAGAT
*
8032927 TTTCAAATTAGTCCCTTGACT
1 TTTCAAATTAGTCCTTTGACT
8032948 TCTGGATGCC
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
162 43 0.27
163 114 0.71
164 4 0.02
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.46
Consensus pattern (163 bp):
TTTCAAATTAGTCCTTTGACTGTTTGACTACACCAAAGGCTGCCACGTGTCGATTTTTTGGCCTA
TTTATGCATTTAATCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAACTTTTATTT
AACTACAAAATTGGTCCCAAAATTTTCCAAGAT
Found at i:8033057 original size:30 final size:30
Alignment explanation
Indices: 8033017--8033316 Score: 345
Period size: 30 Copynumber: 10.0 Consensus size: 30
8033007 CCCTAAGTTA
*
8033017 TCCATAAATTACATTTTAACCCTAAAACTTT
1 TCCA-AAATTACATTTTGACCCTAAAACTTT
* **
8033048 CCCAAAATTACATTTTGACCCCGAAAC-TT
1 TCCAAAATTACATTTTGACCCTAAAACTTT
*
8033077 TCTAAAAATTACATTTTGACCCTAAAACTTT
1 TC-CAAAATTACATTTTGACCCTAAAACTTT
* * *
8033108 TCAAAAATTATATTTTAACCCTAAAACTTT
1 TCCAAAATTACATTTTGACCCTAAAACTTT
8033138 TCCAAAATTACATTTTGA-CCTCAAAACTTT
1 TCCAAAATTACATTTTGACCCT-AAAACTTT
* *
8033168 TCCAAAACTACATTTTGACCCCAAAACTTT
1 TCCAAAATTACATTTTGACCCTAAAACTTT
* *
8033198 TCCAAAATTATATTTTAACCCTAAAACTTT
1 TCCAAAATTACATTTTGACCCTAAAACTTT
*
8033228 TCCAAAATTACATTTTGACCCCAAAACTTT
1 TCCAAAATTACATTTTGACCCTAAAACTTT
* * * ** *
8033258 TTCAAAATTATACTTTGACCCCGAAAC-TC
1 TCCAAAATTACATTTTGACCCTAAAACTTT
* * *
8033287 TCAAAAATTACCATTTTTACCCTCAAACTT
1 TCCAAAATTA-CATTTTGACCCTAAAACTT
8033317 CCTTAAATCC
Statistics
Matches: 229, Mismatches: 34, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
29 15 0.07
30 204 0.89
31 10 0.04
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.35
Consensus pattern (30 bp):
TCCAAAATTACATTTTGACCCTAAAACTTT
Found at i:8033180 original size:90 final size:90
Alignment explanation
Indices: 8033022--8033316 Score: 414
Period size: 90 Copynumber: 3.3 Consensus size: 90
8033012 AGTTATCCAT
* * *
8033022 AAATTACATTTTAACCCTAAAACTTTCCCAAAATTACATTTTGACCCCGAAAC-TTTCTAAAAAT
1 AAATTACATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTC-CAAAAT
*
8033086 TACATTTTGACCCTAAAACTTTTCAA
65 TACATTTTGACCCCAAAACTTTTCAA
* * *
8033112 AAATTATATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCTCAAAACTTTTCCAAAACT
1 AAATTACATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCCAAAATT
*
8033177 ACATTTTGACCCCAAAACTTTTCCA
66 ACATTTTGACCCCAAAACTTTTCAA
* *
8033202 AAATTATATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTTCAAAATT
1 AAATTACATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCCAAAATT
* * * *
8033267 ATACTTTGACCCCGAAAC-TCTCAA
66 ACATTTTGACCCCAAAACTTTTCAA
* *
8033291 AAATTACCATTTTTACCCTCAAACTT
1 AAATTA-CATTTTAACCCTAAAACTT
8033317 CCTTAAATCC
Statistics
Matches: 184, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
89 10 0.05
90 170 0.92
91 4 0.02
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.35
Consensus pattern (90 bp):
AAATTACATTTTAACCCTAAAACTTTTCCAAAATTACATTTTGACCCCAAAACTTTTCCAAAATT
ACATTTTGACCCCAAAACTTTTCAA
Found at i:8045426 original size:68 final size:68
Alignment explanation
Indices: 8045314--8045923 Score: 898
Period size: 68 Copynumber: 8.8 Consensus size: 68
8045304 TTCCTGACTG
* * *
8045314 CTTGAAATCGAAATAGAGTGGATAACACGTCTTTTTCTCTGAAATTGAAGTAAGAGCAACGTCAT
1 CTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCAT
8045379 CCT
66 CCT
* *
8045382 CTTGAAATCGAAGTAGAGTGGATAACACGTCTTTATCTCCGAAATTGAAGTAAGAGCAACGTCAT
1 CTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCAT
*
8045447 CCC
66 CCT
*
8045450 CTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAAAGCAACGTCAT
1 CTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCAT
8045515 CCT
66 CCT
*
8045518 CTTGAAATCGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCAT
1 CTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCAT
*
8045583 CCC
66 CCT
*
8045586 CTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAACGTCAT
1 CTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCAT
8045651 CCT
66 CCT
* * * *
8045654 CTTGAAGTTGAAGTAGAGTGGATAATACGTCTTTATCTCTGAAATTGAAGTAAGAGCAATGTCGT
1 CTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCAT
8045719 CCT
66 CCT
* *
8045722 CTTGAAATTGAAGTAGAGTGGATAACATGTCTTTATCTCTGAAATTGAAGTAAGAGCAATGTCAT
1 CTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCAT
8045787 CCT
66 CCT
* *
8045790 CTTGAAATTGAAGAAGAGTGGATAACACGCCTTTATCTCT-AAATTTGAAGTAAGAGCAGGATCA
1 CTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAA-TTGAAGTAAGAGCA--A-C-
*
8045854 TTTCCTATCCT
61 -GT-C-ATCCT
* * * * *
8045865 CTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCCCGTTGAAATTGAAGTAAGAG
1 CTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTC--TGAAATTGAAGTAAGAG
8045924 TAAGATGAAG
Statistics
Matches: 497, Mismatches: 33, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
67 3 0.01
68 436 0.88
70 1 0.00
73 1 0.00
74 1 0.00
75 22 0.04
76 17 0.03
78 13 0.03
79 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (68 bp):
CTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCAT
CCT
Found at i:8045511 original size:136 final size:136
Alignment explanation
Indices: 8045233--8045847 Score: 944
Period size: 136 Copynumber: 4.5 Consensus size: 136
8045223 ATCATTTCAA
* * * *
8045233 ATCCGCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAGGAGCAAA
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
* * * *
8045298 GATCTTTTCCTGACTGCTTGAAATCGAAATAGAGTGGATAACACGTCTTTTTCTCTGAAATTGAA
66 G-TC--ATCC---C--CTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAA
8045363 GTAAGAGCAACGTC
123 GTAAGAGCAACGTC
* *
8045377 ATCCTCTTGAAATCGAAGTAGAGTGGATAACACGTCTTTATCTCCGAAATTGAAGTAAGAGCAAC
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
*
8045442 GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAAAGC
66 GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
8045507 AACGTC
131 AACGTC
*
8045513 ATCCTCTTGAAATCGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
*
8045578 GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGC
66 GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
8045643 AACGTC
131 AACGTC
* * *
8045649 ATCCTCTTGAAGTTGAAGTAGAGTGGATAATACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAT
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
* * *
8045714 GTCGTCCTCTTGAAATTGAAGTAGAGTGGATAACATGTCTTTATCTCTGAAATTGAAGTAAGAGC
66 GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
*
8045779 AATGTC
131 AACGTC
* *
8045785 ATCCTCTTGAAATTGAAGAAGAGTGGATAACACGCCTTTATCTCT-AAATTTGAAGTAAGAGCA
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAA-TTGAAGTAAGAGCA
8045848 GGATCATTTC
Statistics
Matches: 443, Mismatches: 27, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
135 3 0.01
136 374 0.84
138 1 0.00
141 3 0.01
143 2 0.00
144 60 0.14
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (136 bp):
ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
GTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
AACGTC
Found at i:8045601 original size:204 final size:204
Alignment explanation
Indices: 8045233--8045847 Score: 935
Period size: 204 Copynumber: 3.0 Consensus size: 204
8045223 ATCATTTCAA
* * *
8045233 ATCCGCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAGGAGCAAA
1 ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAA
* * *
8045298 GATCTTTTCCTGACTGCTTGAAATCGAAATAGAGTGGATAACACGTCTTTTTCTCTGAAATTGAA
66 G-TC--AT-C---CT-CTTGAAATCGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAA
*
8045363 GTAAGAGCAACGTCATCCTCTTGAAATCGAAGTAGAGTGGATAACACGTCTTTATCTCCGAAATT
123 GTAAGAGCAACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCCGAAATT
8045428 GAAGTAAGAGCAACGTC
188 GAAGTAAGAGCAACGTC
* *
8045445 ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAAAGCAAC
1 ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAA
8045510 GTCATCCTCTTGAAATCGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
66 GTCATCCTCTTGAAATCGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
* * *
8045575 AACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAG
131 AACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCCGAAATTGAAGTAAG
8045640 AGCAACGTC
196 AGCAACGTC
* * * *
8045649 ATCCTCTTGAAGTTGAAGTAGAGTGGATAATACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAT
1 ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAA
* * *
8045714 GTCGTCCTCTTGAAATTGAAGTAGAGTGGATAACATGTCTTTATCTCTGAAATTGAAGTAAGAGC
66 GTCATCCTCTTGAAATCGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
* * * *
8045779 AATGTCATCCTCTTGAAATTGAAGAAGAGTGGATAACACGCCTTTATCT-CTAAATTTGAAGTAA
131 AACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCCGAAA-TTGAAGTAA
8045843 GAGCA
195 GAGCA
8045848 GGATCATTTC
Statistics
Matches: 375, Mismatches: 27, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
203 3 0.01
204 305 0.81
205 2 0.01
208 1 0.00
209 1 0.00
211 2 0.01
212 61 0.16
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (204 bp):
ATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAA
GTCATCCTCTTGAAATCGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGC
AACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCCGAAATTGAAGTAAG
AGCAACGTC
Found at i:8046334 original size:17 final size:17
Alignment explanation
Indices: 8046302--8046336 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8046292 AAATTTACTT
* *
8046302 ATTTAAATTTATTTTAA
1 ATTTAAACTTAATTTAA
8046319 ATTTAAACTTAATTTAA
1 ATTTAAACTTAATTTAA
8046336 A
1 A
8046337 ATAATATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAAACTTAATTTAA
Found at i:8047224 original size:19 final size:21
Alignment explanation
Indices: 8047181--8047223 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 21
8047171 TAAATATGGT
8047181 AATAAATATTAATAAAAATAATA
1 AATAAATATTAAT--AAATAATA
8047204 AATAAATATTAATAATATAA
1 AATAAATATTAATAA-ATAA
8047224 AAAAAAGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 2 0.11
22 4 0.21
23 13 0.68
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AATAAATATTAATAAATAATA
Found at i:8048121 original size:162 final size:162
Alignment explanation
Indices: 8047932--8048276 Score: 505
Period size: 162 Copynumber: 2.1 Consensus size: 162
8047922 TTTAATTGGC
* * * *
8047932 TTTCAATTTAGTCCAATGACTGTTTGACTGTACCAAAGGTTACCACGTGTCATTTTTTGGCCTAT
1 TTTCAAATTAGTCCATTGACTGTTTGACTGCACCAAAGGCTACCACGTGTCATTTTTTGGCCTAT
*
8047997 TTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCCCTAAATCAACTTTTATTTA
66 TTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCACTAAATCAACTTTTATTTA
* *
8048062 ATTACAAAATTGGCCC-AATAATTTTTCAAGGT
131 ATTACAAAATTGGCCCGAA-AATTTTCCAAGAT
* * * * *
8048094 TTAT-AAATTAGTCCTTTGACTGTTTGACTGCACTAGAGGCTGCCACGTGTCGTTTTTTGGCCTA
1 TT-TCAAATTAGTCCATTGACTGTTTGACTGCACCAAAGGCTACCACGTGTCATTTTTTGGCCTA
** * *
8048158 TTTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTTGTCATTAAATTAACTTTTATTT
65 TTTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCACTAAATCAACTTTTATTT
8048223 AATTACAAAATTGGCCCGAAAATTTTCCAAGAT
130 AATTACAAAATTGGCCCGAAAATTTTCCAAGAT
*
8048256 TTTCAAATTAGTCCCTTGACT
1 TTTCAAATTAGTCCATTGACT
8048277 TCTGGATGCC
Statistics
Matches: 163, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
161 1 0.01
162 159 0.98
163 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.45
Consensus pattern (162 bp):
TTTCAAATTAGTCCATTGACTGTTTGACTGCACCAAAGGCTACCACGTGTCATTTTTTGGCCTAT
TTATGCATTTAGTCCTTTCTATTTTTAATTTATTTTAATTTAATCACTAAATCAACTTTTATTTA
ATTACAAAATTGGCCCGAAAATTTTCCAAGAT
Found at i:8048392 original size:29 final size:29
Alignment explanation
Indices: 8048350--8048473 Score: 167
Period size: 29 Copynumber: 4.2 Consensus size: 29
8048340 ATTTGTCCAT
*
8048350 AAATTACATTTTGACCAAAAACTTTCCCA
1 AAATTACATTTTGACCCAAAACTTTCCCA
* * **
8048379 AAATTACATTTTGACTCGAAACTTTCTGA
1 AAATTACATTTTGACCCAAAACTTTCCCA
*
8048408 AAATTACATTTTGACCCTAAAACTTTCCTA
1 AAATTACATTTTGACCC-AAAACTTTCCCA
*
8048438 AAATTACATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGA-CCCAAAACTTTCCCA
8048468 AAATTA
1 AAATTA
8048474 TACTTTAACC
Statistics
Matches: 82, Mismatches: 11, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
29 40 0.49
30 39 0.48
31 3 0.04
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.35
Consensus pattern (29 bp):
AAATTACATTTTGACCCAAAACTTTCCCA
Found at i:8048433 original size:30 final size:28
Alignment explanation
Indices: 8048350--8048513 Score: 150
Period size: 30 Copynumber: 5.6 Consensus size: 28
8048340 ATTTGTCCAT
* *
8048350 AAATTACATTTTGACCAAAAACTTTCCCA
1 AAATTACATTTTGACCCAAAACTTT-CTA
* *
8048379 AAATTACATTTTGACTCGAAACTTTCTGA
1 AAATTACATTTTGACCCAAAACTTTCT-A
8048408 AAATTACATTTTGACCCTAAAACTTTCCTA
1 AAATTACATTTTGACCC-AAAACTTT-CTA
*
8048438 AAATTACATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGA-CCCAAAAC-TTTCTA
* * * * * *
8048468 AAATTATACTTTAACCCCGAAACTCTCAA
1 AAATTACATTTTGA-CCCAAAACTTTCTA
8048497 AAATTACCATTTT-ACCC
1 AAATTA-CATTTTGACCC
8048514 TCAAAATTCC
Statistics
Matches: 114, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
28 4 0.04
29 50 0.44
30 52 0.46
31 8 0.07
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.34
Consensus pattern (28 bp):
AAATTACATTTTGACCCAAAACTTTCTA
Found at i:8048556 original size:58 final size:58
Alignment explanation
Indices: 8048494--8048688 Score: 166
Period size: 59 Copynumber: 3.3 Consensus size: 58
8048484 CCGAAACTCT
* *
8048494 CAAAAATTACCATTTTACCCTCAAAATTCCCTAAATCCCA-TTTTAACCCCGATTTCAC
1 CAAAAATTACCATTTTACCCTCAAACTT-CCTAAATTCCATTTTTAACCCCGATTTCAC
* * * * * * ** * **
8048552 CAAAACTTACCATTTT-GCCTCCGAACTTTCTAAAATTTCATTTTTGACCTTGTTTTTGC
1 CAAAAATTACCATTTTACCCT-CAAACTTCCT-AAATTCCATTTTTAACCCCGATTTCAC
* *
8048611 CAAAATTTACCATTTTATTCCC-CAAACTTTCC-AAATTCCATTTTTAGCCCCGATTTCA-
1 CAAAAATTACCATTTTA--CCCTCAAAC-TTCCTAAATTCCATTTTTAACCCCGATTTCAC
8048669 CAAAAATTACCATTTTACCC
1 CAAAAATTACCATTTTACCC
8048689 CTAAAAACCC
Statistics
Matches: 104, Mismatches: 26, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
56 3 0.03
57 5 0.05
58 42 0.40
59 45 0.43
60 4 0.04
61 3 0.03
62 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.04, T:0.37
Consensus pattern (58 bp):
CAAAAATTACCATTTTACCCTCAAACTTCCTAAATTCCATTTTTAACCCCGATTTCAC
Found at i:8052138 original size:14 final size:14
Alignment explanation
Indices: 8052119--8052160 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
8052109 GTCCAAATTC
8052119 AAAAAATTCAAAAA
1 AAAAAATTCAAAAA
*
8052133 AAAAAATT-ATAAAT
1 AAAAAATTCA-AAAA
*
8052147 AAAATATTCAAAAA
1 AAAAAATTCAAAAA
8052161 TATAAAGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
13 1 0.04
14 21 0.91
15 1 0.04
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAAAATTCAAAAA
Found at i:8058990 original size:50 final size:49
Alignment explanation
Indices: 8058911--8059006 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 49
8058901 TCCATATAGA
*
8058911 ACTACACTTTTTCTATTTGAGATTGATTAGAATAAAGTTTTTCAACGTT
1 ACTACACTTTTTCTATTTGAGATTAATTAGAATAAAGTTTTTCAACGTT
* *
8058960 ACTACACTTTTTTCTATTTGATATTAATTAGAATAAGGTTTTTCAAC
1 ACTACAC-TTTTTCTATTTGAGATTAATTAGAATAAAGTTTTTCAAC
8059007 CTTTAAATAG
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
49 7 0.16
50 36 0.84
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.46
Consensus pattern (49 bp):
ACTACACTTTTTCTATTTGAGATTAATTAGAATAAAGTTTTTCAACGTT
Found at i:8061143 original size:60 final size:61
Alignment explanation
Indices: 8061049--8061442 Score: 171
Period size: 59 Copynumber: 6.7 Consensus size: 61
8061039 TAAACTGTCC
* * *
8061049 AAAATTATATTTTGACCCTAAAACTTCTCCAAAATTA-TATTTTGACCC-CAAAACTTT-TAA
1 AAAATTACATTTTAACCCTAAAACTTCTCCAAAATTACCATTTT-ACCCTC-AAACTTTCTAA
*
8061109 AAAATTACATTTTAACCCTTAAACTTC-CCAAAAATTACCATTTTACCCTCAAACTTTCT--
1 AAAATTACATTTTAACCCTAAAACTTCTCC-AAAATTACCATTTTACCCTCAAACTTTCTAA
* ** * * * * *
8061168 AAAATTTCATTTTTAA-CCT-CGATTTCACCAAAAATTATCATTTTACCCTCGAACTTT-T-C
1 AAAATTACA-TTTTAACCCTAAAACTTCTCC-AAAATTACCATTTTACCCTCAAACTTTCTAA
** * ** * *
8061227 AAAATCCCTTTTTAACCC--CGA-TT-TACCAAAAATTATCATTTTACCCTCGAACTTTCT--
1 AAAATTACATTTTAACCCTAAAACTTCT-CC-AAAATTACCATTTTACCCTCAAACTTTCTAA
* * * * *
8061284 AAAATT-CTATTTTTGACCCT--AA-TTTTACCAAAATTA-CATTTTTGCCCCCAAACTTTC--C
1 AAAATTAC-A-TTTTAACCCTAAAACTTCT-CCAAAATTACCA-TTTTACCCTCAAACTTTCTAA
* * * * *
8061342 AAAATTCCATTTTTAACCCT--AATTTCACCAAAAAATACCATTTTACCCTCAAACTTTC--C
1 AAAATTACA-TTTTAACCCTAAAACTTCTCC-AAAATTACCATTTTACCCTCAAACTTTCTAA
* * * *
8061401 AAAATTCCATTTTAACCC-CAAATTTTTCCAAAATTA-CATTTT
1 AAAATTACATTTTAACCCTAAAACTTCTCCAAAATTACCATTTT
8061443 TCCCCCGAGA
Statistics
Matches: 282, Mismatches: 30, Indels: 47
0.79 0.08 0.13
Matches are distributed among these distances:
56 1 0.00
57 45 0.16
58 84 0.30
59 95 0.34
60 50 0.18
61 7 0.02
ACGTcount: A:0.35, C:0.25, G:0.02, T:0.38
Consensus pattern (61 bp):
AAAATTACATTTTAACCCTAAAACTTCTCCAAAATTACCATTTTACCCTCAAACTTTCTAA
Found at i:8061181 original size:29 final size:29
Alignment explanation
Indices: 8061040--8061443 Score: 164
Period size: 30 Copynumber: 13.8 Consensus size: 29
8061030 ATAGGTCCTT
* * *
8061040 AAACTGTCCAAAATTAT-ATTTTGACCCTA
1 AAACTTTCCAAAATT-TCATTTTTACCCTC
*
8061069 AAACTTCTCCAAAATTAT-ATTTTGACCC-C
1 AAACTT-TCCAAAATT-TCATTTTTACCCTC
** * * *
8061098 AAAACTTTTAAAAAATTACATTTTAACCCTT
1 -AAAC-TTTCCAAAATTTCATTTTTACCCTC
* *
8061129 AAACTTCCCAAAAATTACCA-TTTTACCCTC
1 AAACTTTCC-AAAATT-TCATTTTTACCCTC
* *
8061159 AAACTTTCTAAAATTTCATTTTTAACCTC
1 AAACTTTCCAAAATTTCATTTTTACCCTC
*
8061188 -GA-TTTCACCAAAAATTATCA-TTTTACCCTC
1 AAACTTT--CC-AAAATT-TCATTTTTACCCTC
* * * *
8061218 GAACTTTTCAAAA-TCCCTTTTTAACCC-C
1 AAACTTTCCAAAATTTCATTTTT-ACCCTC
*
8061246 -GA-TTTACCAAAAATTATCA-TTTTACCCTC
1 AAACTTT-CC-AAAATT-TCATTTTTACCCTC
* *
8061275 GAACTTTCTAAAA-TTCTATTTTTGACCCT-
1 AAACTTTCCAAAATTTC-ATTTTT-ACCCTC
* * * *
8061304 -AATTTTACCAAAATTACATTTTTGCCCCC
1 AAACTTT-CCAAAATTTCATTTTTACCCTC
*
8061333 AAACTTTCCAAAATTCCATTTTTAACCCT-
1 AAACTTTCCAAAATTTCATTTTT-ACCCTC
**
8061362 -AA-TTTCACCAAAAAATACCA-TTTTACCCTC
1 AAACTTT--CC--AAAATTTCATTTTTACCCTC
* *
8061392 AAACTTTCCAAAATTCCATTTTAACCC-C
1 AAACTTTCCAAAATTTCATTTTTACCCTC
* *
8061420 AAATTTTTCCAAAATTACATTTTT
1 AAA-CTTTCCAAAATTTCATTTTT
8061444 CCCCCGAGAG
Statistics
Matches: 290, Mismatches: 45, Indels: 80
0.70 0.11 0.19
Matches are distributed among these distances:
26 3 0.01
27 11 0.04
28 41 0.14
29 102 0.35
30 106 0.37
31 21 0.07
32 6 0.02
ACGTcount: A:0.35, C:0.25, G:0.02, T:0.37
Consensus pattern (29 bp):
AAACTTTCCAAAATTTCATTTTTACCCTC
Found at i:8061425 original size:59 final size:59
Alignment explanation
Indices: 8061136--8061442 Score: 349
Period size: 58 Copynumber: 5.3 Consensus size: 59
8061126 CTTAAACTTC
* * * *
8061136 CCAAAAATTACCATTTTACCCTCAAACTTTCTAAAATTTCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
* * * * *
8061195 CCAAAAATTATCATTTTACCCTCGAACTTTTCAAAA-TCCCTTTTTAACCCCGATTT-A
1 CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
* * * * * * *
8061252 CCAAAAATTATCATTTTACCCTCGAACTTTCTAAAATTCTATTTTTGACCCTAATTTTA
1 CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
* * *
8061311 CC-AAAATTA-CATTTTTGCCCCCAAACTTTCCAAAATTCCATTTTTAACCCTAATTTCA
1 CCAAAAATTACCA-TTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
* **
8061369 CCAAAAAATACCATTTTACCCTCAAACTTTCCAAAATTCCA-TTTTAACCCCAAATTTTT
1 CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCC-AATTTCA
8061428 CC-AAAATTA-CATTTT
1 CCAAAAATTACCATTTT
8061443 TCCCCCGAGA
Statistics
Matches: 214, Mismatches: 28, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
57 43 0.20
58 95 0.44
59 74 0.35
60 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.02, T:0.38
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
Found at i:8061448 original size:29 final size:29
Alignment explanation
Indices: 8061304--8061448 Score: 114
Period size: 29 Copynumber: 5.0 Consensus size: 29
8061294 TTTTGACCCT
*
8061304 AATTTTACCAAAATTACATTTTTGCCCCCA
1 AATTTTTCCAAAATTACATTTTT-CCCCCA
* * ** *
8061334 AA-CTTTCCAAAATTCCATTTTTAACCCT
1 AATTTTTCCAAAATTACATTTTTCCCCCA
** * * *
8061362 AATTTCACCAAAAAATACCATTTTACCCTCA
1 AATTTTTCC-AAAATTA-CATTTTTCCCCCA
* * **
8061393 AA-CTTTCCAAAATTCCATTTTAACCCCA
1 AATTTTTCCAAAATTACATTTTTCCCCCA
8061421 AATTTTTCCAAAATTACATTTTTCCCCC
1 AATTTTTCCAAAATTACATTTTTCCCCC
8061449 GAGAGTTAAT
Statistics
Matches: 84, Mismatches: 27, Indels: 9
0.70 0.22 0.08
Matches are distributed among these distances:
28 18 0.21
29 46 0.55
30 10 0.12
31 10 0.12
ACGTcount: A:0.34, C:0.29, G:0.01, T:0.36
Consensus pattern (29 bp):
AATTTTTCCAAAATTACATTTTTCCCCCA
Found at i:8064979 original size:19 final size:19
Alignment explanation
Indices: 8064951--8064987 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8064941 TCATTTCAAG
8064951 ATTTTTATAT-AAATTTTA
1 ATTTTTATATAAAATTTTA
8064969 ATTTATTATATAAAATTTT
1 ATTT-TTATATAAAATTTT
8064988 TATCCACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 6 0.35
20 7 0.41
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTTTTATATAAAATTTTA
Found at i:8065702 original size:20 final size:21
Alignment explanation
Indices: 8065677--8065722 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
8065667 TTTCTTGTAG
*
8065677 AAACCCGAGTT-TTT-CCTCTA
1 AAACCC-AGTTATTTCCCTATA
8065697 AAACCCAGTTATTTCCCTATA
1 AAACCCAGTTATTTCCCTATA
8065718 AAACC
1 AAACC
8065723 TCAGGTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 9 0.39
21 10 0.43
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (21 bp):
AAACCCAGTTATTTCCCTATA
Found at i:8066332 original size:8 final size:9
Alignment explanation
Indices: 8066269--8066340 Score: 63
Period size: 9 Copynumber: 7.6 Consensus size: 9
8066259 ACATTTAATT
8066269 AATTTTTAA
1 AATTTTTAA
* *
8066278 AAATTTAAA
1 AATTTTTAA
**
8066287 AATCATTAA
1 AATTTTTAA
*
8066296 AATTACTTGAA
1 AATT--TTTAA
8066307 ATACTTTTTAA
1 A-A-TTTTTAA
8066318 AATTTTTAA
1 AATTTTTAA
8066327 AATTTTTAA
1 AATTTTTAA
8066336 AATTT
1 AATTT
8066341 AAAAATTTAA
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
9 36 0.73
10 1 0.02
11 9 0.18
12 1 0.02
13 2 0.04
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (9 bp):
AATTTTTAA
Found at i:8069206 original size:2 final size:2
Alignment explanation
Indices: 8069199--8069243 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
8069189 AACCTGACCC
8069199 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8069241 AT A
1 AT A
8069244 GCTTCGACGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.