Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 32 of 135
Found at i:8359455 original size:23 final size:24
Alignment explanation
Indices: 8359412--8359456 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
8359402 ATTTAATTTG
*
8359412 ATAAAATAAATAATATTTTGAAAA
1 ATAAAATAAATAATATATTGAAAA
8359436 ATAAAA-AAATCAA-ATATTGAA
1 ATAAAATAAAT-AATATATTGAA
8359457 TTGGTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.29
Consensus pattern (24 bp):
ATAAAATAAATAATATATTGAAAA
Found at i:8360512 original size:22 final size:23
Alignment explanation
Indices: 8360478--8360527 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
8360468 AAATGCCTTT
8360478 TTTTTTTGAAAAATCACTGGAAA
1 TTTTTTTGAAAAATCACTGGAAA
8360501 TTTTTTTGAAAAATCACTGGAAA
1 TTTTTTTGAAAAATCACTGGAAA
8360524 TTTT
1 TTTT
8360528 CAAATATCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (23 bp):
TTTTTTTGAAAAATCACTGGAAA
Found at i:8364618 original size:23 final size:22
Alignment explanation
Indices: 8364492--8364602 Score: 143
Period size: 22 Copynumber: 5.0 Consensus size: 22
8364482 GCAATAGTAG
* *
8364492 GCACACAAAGTGCT-AATCAGAGG
1 GCACACACAGTGCTGAA-CAGA-A
*
8364515 GCACACACAATGCTGAACAGAA
1 GCACACACAGTGCTGAACAGAA
* *
8364537 GCACACACAGTGTTGAACAGAGG
1 GCACACACAGTGCTGAACAGA-A
8364560 GCACACACAGTGCTGAACAGAA
1 GCACACACAGTGCTGAACAGAA
8364582 GCACACACAGTGCTGAACAGA
1 GCACACACAGTGCTGAACAGA
8364603 GGGCACGAAA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
22 40 0.51
23 36 0.46
24 2 0.03
ACGTcount: A:0.40, C:0.25, G:0.24, T:0.11
Consensus pattern (22 bp):
GCACACACAGTGCTGAACAGAA
Found at i:8364624 original size:23 final size:23
Alignment explanation
Indices: 8364491--8364608 Score: 161
Period size: 23 Copynumber: 5.2 Consensus size: 23
8364481 GGCAATAGTA
*
8364491 GGCACACAAAGTGCT-AATCAGAG
1 GGCACACACAGTGCTGAA-CAGAG
*
8364514 GGCACACACAATGCTGAACAGA-
1 GGCACACACAGTGCTGAACAGAG
* *
8364536 AGCACACACAGTGTTGAACAGAG
1 GGCACACACAGTGCTGAACAGAG
8364559 GGCACACACAGTGCTGAACAGA-
1 GGCACACACAGTGCTGAACAGAG
*
8364581 AGCACACACAGTGCTGAACAGAG
1 GGCACACACAGTGCTGAACAGAG
8364604 GGCAC
1 GGCAC
8364609 GAAACGTGCT
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
22 40 0.48
23 41 0.49
24 2 0.02
ACGTcount: A:0.38, C:0.25, G:0.26, T:0.10
Consensus pattern (23 bp):
GGCACACACAGTGCTGAACAGAG
Found at i:8364624 original size:45 final size:45
Alignment explanation
Indices: 8364492--8364608 Score: 191
Period size: 45 Copynumber: 2.6 Consensus size: 45
8364482 GCAATAGTAG
* *
8364492 GCACACAAAGTGCT-AATCAGAGGGCACACACAATGCTGAACAGAA
1 GCACACACAGTGCTGAA-CAGAGGGCACACACAGTGCTGAACAGAA
*
8364537 GCACACACAGTGTTGAACAGAGGGCACACACAGTGCTGAACAGAA
1 GCACACACAGTGCTGAACAGAGGGCACACACAGTGCTGAACAGAA
8364582 GCACACACAGTGCTGAACAGAGGGCAC
1 GCACACACAGTGCTGAACAGAGGGCAC
8364609 GAAACGTGCT
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
45 65 0.97
46 2 0.03
ACGTcount: A:0.38, C:0.26, G:0.26, T:0.10
Consensus pattern (45 bp):
GCACACACAGTGCTGAACAGAGGGCACACACAGTGCTGAACAGAA
Found at i:8370392 original size:23 final size:23
Alignment explanation
Indices: 8370253--8370390 Score: 204
Period size: 23 Copynumber: 6.0 Consensus size: 23
8370243 GCTCTTTATT
* *
8370253 ATTAGCACTGTGTGTGCTCTATG
1 ATTAGCACTTTGTGTGCTCTCTG
*
8370276 ATTAGCACTTTGTGTGCTCTATG
1 ATTAGCACTTTGTGTGCTCTCTG
*
8370299 ATTAGCACTTTGTGTGCTCTATG
1 ATTAGCACTTTGTGTGCTCTCTG
8370322 ATTAGCACTTTGTGTGCTCTCTG
1 ATTAGCACTTTGTGTGCTCTCTG
* *
8370345 ATTAGTACTTTGTGTACTCTCTG
1 ATTAGCACTTTGTGTGCTCTCTG
* *
8370368 TTTAGCACTGTGTGTGCTCTCTG
1 ATTAGCACTTTGTGTGCTCTCTG
8370391 TTGCCCAACA
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 107 1.00
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.43
Consensus pattern (23 bp):
ATTAGCACTTTGTGTGCTCTCTG
Found at i:8372579 original size:48 final size:49
Alignment explanation
Indices: 8372523--8372619 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
8372513 CAATTAATCG
* *
8372523 GATATTAATCTAATTG-AGAATATAAAAAAAATATTATAATGGTTTTTA
1 GATATTAATCTAATTGAAAAAAATAAAAAAAATATTATAATGGTTTTTA
*
8372571 GATATTAATCTAATTGAAAAAAATAAAAAAATTATTATAATGGTTTTTA
1 GATATTAATCTAATTGAAAAAAATAAAAAAAATATTATAATGGTTTTTA
8372620 TGTGTTTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
48 16 0.36
49 29 0.64
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.39
Consensus pattern (49 bp):
GATATTAATCTAATTGAAAAAAATAAAAAAAATATTATAATGGTTTTTA
Found at i:8384530 original size:21 final size:21
Alignment explanation
Indices: 8384482--8384533 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
8384472 AGAGTTTTTA
8384482 GTATCGGTAGAAGCATGACAC
1 GTATCGGTAGAAGCATGACAC
* **
8384503 GTTTCGGTAGAAGCCAT-ACTT
1 GTATCGGTAGAAG-CATGACAC
8384524 GTATCGGTAG
1 GTATCGGTAG
8384534 TATTGTTTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (21 bp):
GTATCGGTAGAAGCATGACAC
Found at i:8386782 original size:51 final size:51
Alignment explanation
Indices: 8386713--8386945 Score: 369
Period size: 51 Copynumber: 4.6 Consensus size: 51
8386703 ATTCATTTAA
* * *
8386713 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATATATGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCATTAATCCATAAAGGATTCATT
* * * *
8386764 TACTCACGATAACACTTAGTTATTGGACCGTTAATCCATAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCATTAATCCATAAAGGATTCATT
8386815 TACTCACGATGACACTTAGTCATCGGACCATTAATCCATAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCATTAATCCATAAAGGATTCATT
*
8386866 TACTCACGATGATACTTAGTCATCGGACCATTAATCCATAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCATTAATCCATAAAGGATTCATT
*
8386917 CACTCACGATGACACTTTA-TCATCGGACC
1 TACTCACGATGACAC-TTAGTCATCGGACC
8386946 CTTTCGTTTA
Statistics
Matches: 168, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
51 165 0.98
52 3 0.02
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (51 bp):
TACTCACGATGACACTTAGTCATCGGACCATTAATCCATAAAGGATTCATT
Found at i:8391655 original size:22 final size:22
Alignment explanation
Indices: 8391630--8391679 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
8391620 TCCATGAAAA
*
8391630 AAGTCTGCTAGTTTGAAGATTG
1 AAGTCTGCAAGTTTGAAGATTG
* *
8391652 AAGTTTGCAAGTTTGATGATTG
1 AAGTCTGCAAGTTTGAAGATTG
8391674 AAGTCT
1 AAGTCT
8391680 TCATATATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (22 bp):
AAGTCTGCAAGTTTGAAGATTG
Found at i:8400948 original size:20 final size:21
Alignment explanation
Indices: 8400923--8400966 Score: 81
Period size: 20 Copynumber: 2.1 Consensus size: 21
8400913 CGTATACTTT
8400923 AGACCGGGTAAAGGGGGTT-C
1 AGACCGGGTAAAGGGGGTTAC
8400943 AGACCGGGTAAAGGGGGTTAC
1 AGACCGGGTAAAGGGGGTTAC
8400964 AGA
1 AGA
8400967 AAAGGTAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.30, C:0.14, G:0.43, T:0.14
Consensus pattern (21 bp):
AGACCGGGTAAAGGGGGTTAC
Found at i:8400973 original size:21 final size:20
Alignment explanation
Indices: 8400929--8400974 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8400919 CTTTAGACCG
***
8400929 GGTAAAGGGGGTTCAGACCG
1 GGTAAAGGGGGTTCAGAAAA
8400949 GGTAAAGGGGGTTACAGAAAA
1 GGTAAAGGGGGTT-CAGAAAA
8400970 GGTAA
1 GGTAA
8400975 GAAGAGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.35, C:0.09, G:0.41, T:0.15
Consensus pattern (20 bp):
GGTAAAGGGGGTTCAGAAAA
Found at i:8411237 original size:6 final size:6
Alignment explanation
Indices: 8411226--8411270 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
8411216 TGATCAAAAT
* * *
8411226 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA
8411271 TATGAATTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.47, C:0.00, G:0.31, T:0.22
Consensus pattern (6 bp):
TGAAAG
Found at i:8412830 original size:23 final size:24
Alignment explanation
Indices: 8412804--8412848 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
8412794 ATTAAATTCT
8412804 TTAAAAAATAAT-AAAATCATAAA
1 TTAAAAAATAATAAAAATCATAAA
* * *
8412827 TTAATATATGATAAAAATCATA
1 TTAAAAAATAATAAAAATCATA
8412849 TTTTAACCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 9 0.50
24 9 0.50
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (24 bp):
TTAAAAAATAATAAAAATCATAAA
Found at i:8413435 original size:21 final size:20
Alignment explanation
Indices: 8413400--8413441 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
8413390 AATTTATTAC
**
8413400 TTAAATAATTCAATAAGATAA
1 TTAAATAATAAAATAA-ATAA
8413421 TTAAATAATAAAATAAATAA
1 TTAAATAATAAAATAAATAA
8413441 T
1 T
8413442 ATAATATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
TTAAATAATAAAATAAATAA
Found at i:8413971 original size:6 final size:6
Alignment explanation
Indices: 8413961--8413992 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
8413951 GTGGCCCTAC
*
8413961 GGCTTC GGCTTT GGCTTT GGCTTT GGCTTT GG
1 GGCTTT GGCTTT GGCTTT GGCTTT GGCTTT GG
8413993 GTCCTCCACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.19, G:0.38, T:0.44
Consensus pattern (6 bp):
GGCTTT
Found at i:8419172 original size:18 final size:18
Alignment explanation
Indices: 8419149--8419191 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
8419139 GAATGCTTTT
8419149 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
* *
8419167 TTAATTACAAATTTTAAA
1 TTAATTAAAAAATTTAAA
8419185 TTAATTA
1 TTAATTA
8419192 TAACTGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:8422774 original size:20 final size:20
Alignment explanation
Indices: 8422749--8422800 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
8422739 ATTAATTATT
8422749 TATAAAATTTAATTTAAATA
1 TATAAAATTTAATTTAAATA
*
8422769 TAT-AAATTATATTTTAAATA
1 TATAAAATT-TAATTTAAATA
*
8422789 T-TAAAATATAAT
1 TATAAAATTTAAT
8422801 CAATAATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TATAAAATTTAATTTAAATA
Found at i:8422782 original size:19 final size:19
Alignment explanation
Indices: 8422751--8422848 Score: 61
Period size: 20 Copynumber: 4.8 Consensus size: 19
8422741 TAATTATTTA
* *
8422751 TAAAATTTAATTTAAATAT
1 TAAAATATATTTTAAATAT
*
8422770 ATAAATTATATTTTAAATAT
1 -TAAAATATATTTTAAATAT
* **
8422790 TAAAATATAATCAATAATAAT
1 TAAAATATATTTTA-AAT-AT
*
8422811 TAAAATATATAATATTATATATT
1 TAAAATATAT--T-TTAAATA-T
*
8422834 TAAAATAAATTTTAA
1 TAAAATATATTTTAA
8422849 TGAAAAAATA
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
19 10 0.17
20 22 0.37
21 12 0.20
22 1 0.02
23 13 0.22
24 1 0.02
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (19 bp):
TAAAATATATTTTAAATAT
Found at i:8423436 original size:21 final size:21
Alignment explanation
Indices: 8423412--8423472 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
8423402 AAAATATATA
8423412 AATTATATTTTAAATATTTGT
1 AATTATATTTTAAATATTTGT
* *
8423433 AATTATATATTAATACATTTGT
1 AATTATATTTTAA-ATATTTGT
*
8423455 -ATTAT-TTTAAAAATATTT
1 AATTATATTT-TAAATATTT
8423473 TTTATTTTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
20 7 0.21
21 19 0.58
22 7 0.21
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (21 bp):
AATTATATTTTAAATATTTGT
Found at i:8434148 original size:23 final size:23
Alignment explanation
Indices: 8434118--8434162 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
8434108 TAGCGCGCCC
8434118 TCTGTTTAGCACGTTTCGTGCCT
1 TCTGTTTAGCACGTTTCGTGCCT
*
8434141 TCTGTTTAGCATGTTTCGTGCC
1 TCTGTTTAGCACGTTTCGTGCC
8434163 CTTTATTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.09, C:0.24, G:0.22, T:0.44
Consensus pattern (23 bp):
TCTGTTTAGCACGTTTCGTGCCT
Found at i:8434174 original size:23 final size:24
Alignment explanation
Indices: 8434125--8434187 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 24
8434115 CCCTCTGTTT
* * *
8434125 AGCACGTTTCGTG-CCTTCTGTTT
1 AGCATGTTTCGTGCCCTTCTATTC
8434148 AGCATGTTTCGTGCCCTT-TATTC
1 AGCATGTTTCGTGCCCTTCTATTC
*
8434171 AGCACTGTGT-GTGCCCT
1 AGCA-TGTTTCGTGCCCT
8434188 CTGTTATTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 26 0.76
24 8 0.24
ACGTcount: A:0.11, C:0.27, G:0.22, T:0.40
Consensus pattern (24 bp):
AGCATGTTTCGTGCCCTTCTATTC
Found at i:8434207 original size:25 final size:24
Alignment explanation
Indices: 8434165--8434241 Score: 95
Period size: 23 Copynumber: 3.1 Consensus size: 24
8434155 TTCGTGCCCT
8434165 TTATTCAGCACTGTGTGTGCCCTCTG
1 TTATT-AGCACT-TGTGTGCCCTCTG
8434191 TTATTAGCACTTCGTGTGCCCTCTG
1 TTATTAGCACTT-GTGTGCCCTCTG
*
8434216 --ATTAGTACTTTGTGTGCCCTCTG
1 TTATTAGCAC-TTGTGTGCCCTCTG
8434239 TTA
1 TTA
8434242 CCCAGCACTT
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
23 19 0.41
24 3 0.07
25 19 0.41
26 5 0.11
ACGTcount: A:0.13, C:0.25, G:0.21, T:0.42
Consensus pattern (24 bp):
TTATTAGCACTTGTGTGCCCTCTG
Found at i:8434257 original size:48 final size:48
Alignment explanation
Indices: 8434178--8434273 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 48
8434168 TTCAGCACTG
** * *
8434178 TGTGTGCCCTCTGTTATTAGCACTTCGTGTGCCCTCTGATTAGTACTT
1 TGTGTGCCCTCTGTTACCAGCACTTCATGTGCCCTCTGATAAGTACTT
* *
8434226 TGTGTGCCCTCTGTTACCCAGCACTT-ATGTGCTCTCTGCTAAGTACTT
1 TGTGTGCCCTCTGTTA-CCAGCACTTCATGTGCCCTCTGATAAGTACTT
8434274 CGGTACTTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 34 0.83
49 7 0.17
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.40
Consensus pattern (48 bp):
TGTGTGCCCTCTGTTACCAGCACTTCATGTGCCCTCTGATAAGTACTT
Found at i:8434894 original size:25 final size:25
Alignment explanation
Indices: 8434866--8434913 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
8434856 AAGTTTTTTG
8434866 ATTTATTATTTAATTAAATAATTCA
1 ATTTATTATTTAATTAAATAATTCA
8434891 ATTTATTATTTAATTAAATAATT
1 ATTTATTATTTAATTAAATAATT
8434914 GAAGTTCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
ATTTATTATTTAATTAAATAATTCA
Found at i:8435074 original size:20 final size:21
Alignment explanation
Indices: 8435049--8435089 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8435039 GTTAAGAAAA
8435049 TTATTT-AATTAAAAAATAAT
1 TTATTTAAATTAAAAAATAAT
*
8435069 TTATTTAAATTAATAAATAAT
1 TTATTTAAATTAAAAAATAAT
8435090 ATTTCTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TTATTTAAATTAAAAAATAAT
Found at i:8437391 original size:6 final size:6
Alignment explanation
Indices: 8437392--8437482 Score: 78
Period size: 6 Copynumber: 15.0 Consensus size: 6
8437382 TTTTAATTTT
*
8437392 ATTTAA ATTTAA ATTT-A TTTTAA ATTTAA ATTTAA TTATTTAA ATTT-A
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA --ATTTAA ATTTAA
* * ** * *
8437440 CTTTGA ATTTAA ATTTAA ATAAAA ATTAAA ACATTAA ATTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA A-TTTAA ATTTAA
8437483 CATTAAAAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
5 8 0.12
6 51 0.74
7 4 0.06
8 6 0.09
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (6 bp):
ATTTAA
Found at i:8437396 original size:28 final size:28
Alignment explanation
Indices: 8437364--8437418 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
8437354 TTTTCGTTTA
*
8437364 ATTTAAAGTTAAATTGATTTTTAATTTT
1 ATTTAAAGTTAAATTGATTTTAAATTTT
* *
8437392 ATTTAAATTTAAATTTATTTTAAATTT
1 ATTTAAAGTTAAATTGATTTTAAATTT
8437419 AAATTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (28 bp):
ATTTAAAGTTAAATTGATTTTAAATTTT
Found at i:8437413 original size:17 final size:16
Alignment explanation
Indices: 8437383--8437456 Score: 89
Period size: 17 Copynumber: 4.6 Consensus size: 16
8437373 TAAATTGATT
*
8437383 TTTAATTTTATTTAAA
1 TTTAAATTTATTTAAA
8437399 TTTAAATTTATTTTAAA
1 TTTAAATTTA-TTTAAA
*
8437416 TTTAAATTTAATT--A
1 TTTAAATTTATTTAAA
*
8437430 TTTAAATTTACTTTGAA
1 TTTAAATTTA-TTTAAA
8437447 TTTAAATTTA
1 TTTAAATTTA
8437457 AATAAAAATT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
14 11 0.22
15 2 0.04
16 11 0.22
17 27 0.53
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (16 bp):
TTTAAATTTATTTAAA
Found at i:8439172 original size:161 final size:161
Alignment explanation
Indices: 8438993--8439289 Score: 481
Period size: 161 Copynumber: 1.8 Consensus size: 161
8438983 GCTTTCAATT
*
8438993 TAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCA-TTTTTGGATCATTTCTGCAT
1 TAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCACTTTTTGGATCATTTATGCAT
* * *
8439057 TTAGTCCCTGACATTTTTAATTTGTTTTAATTTAATCCCCAAATTAAC-TTTATTTTAATTACGA
66 TTAGTCCCTGACATTTTTAATTTGTTTTAATTTAAT-CCCAAATCAACTTTTA-TTCAATTACAA
8439121 AATTGGCCAATAATTTTTTCAAAGTTTATAAAC
129 AATTGGCCAATAATTTTTTCAAAGTTTATAAAC
*
8439154 TAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCACTTTTTGGATTATTTATGCAT
1 TAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCACTTTTTGGATCATTTATGCAT
* ***
8439219 TTAGTCCTTTTTATTTTTAATTTGTTTTAATTTAATCCCAAATCAACTTTTATTCAATTACAAAA
66 TTAGTCCCTGACATTTTTAATTTGTTTTAATTTAATCCCAAATCAACTTTTATTCAATTACAAAA
8439284 TTGGCC
131 TTGGCC
8439290 CAAGAAGTTT
Statistics
Matches: 125, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
161 71 0.57
162 54 0.43
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.44
Consensus pattern (161 bp):
TAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCACTTTTTGGATCATTTATGCAT
TTAGTCCCTGACATTTTTAATTTGTTTTAATTTAATCCCAAATCAACTTTTATTCAATTACAAAA
TTGGCCAATAATTTTTTCAAAGTTTATAAAC
Found at i:8439502 original size:29 final size:29
Alignment explanation
Indices: 8439469--8439628 Score: 107
Period size: 29 Copynumber: 5.4 Consensus size: 29
8439459 GAAATTATCA
* *
8439469 TTTTACCCCTAAATCTTCTAAAATTCCAT
1 TTTTACCCCGATATCTTCTAAAATTCCAT
* *
8439498 TTTTAACCCCGATTTC-ACTAAAAATTACCA-
1 TTTT-ACCCCGATATCTTCT-AAAATT-CCAT
8439528 TTTTACCCCCGA-ATCTT-TGAAAATTCCAT
1 TTTTA-CCCCGATATCTTCT-AAAATTCCAT
* * * *
8439557 TTTTAACCCGATTTCATCGAAAATTACCA-
1 TTTTACCCCGATATCTTCTAAAATT-CCAT
* *
8439586 TTTTACCTCTG-TATCTTTTAAAATTCCATT
1 TTTTACC-CCGATATCTTCTAAAATTCCA-T
8439616 TTTTAACCCCGAT
1 TTTT-ACCCCGAT
8439629 TTCACCAAAA
Statistics
Matches: 99, Mismatches: 18, Indels: 26
0.69 0.13 0.18
Matches are distributed among these distances:
28 11 0.11
29 46 0.46
30 35 0.35
31 7 0.07
ACGTcount: A:0.30, C:0.26, G:0.04, T:0.40
Consensus pattern (29 bp):
TTTTACCCCGATATCTTCTAAAATTCCAT
Found at i:8439531 original size:59 final size:58
Alignment explanation
Indices: 8439460--8439653 Score: 241
Period size: 59 Copynumber: 3.3 Consensus size: 58
8439450 GAAACTTTCG
* *
8439460 AAATTATCATTTTACCCCTAAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACTAA
1 AAATTACCATTTTACCCCTGAATCTT-TAAAATTCCATTTTTAACCCCGATTTCACTAA
* *
8439519 AAATTACCATTTTACCCCCGAATCTTTGAAAATTCCATTTTTAA-CCCGATTTCA-TCGA
1 AAATTACCATTTTACCCCTGAATCTTT-AAAATTCCATTTTTAACCCCGATTTCACT-AA
* * *
8439577 AAATTACCATTTTACCTCTGTATCTTTTAAAATTCCATTTTTTAACCCCGATTTCAC-CA
1 AAATTACCATTTTACCCCTGAATC-TTTAAAATTCCA-TTTTTAACCCCGATTTCACTAA
* *
8439636 AAATCACCATTTTGCCCC
1 AAATTACCATTTTACCCC
8439654 GGGTATCTAC
Statistics
Matches: 118, Mismatches: 11, Indels: 12
0.84 0.08 0.09
Matches are distributed among these distances:
57 1 0.01
58 42 0.36
59 65 0.55
60 10 0.08
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (58 bp):
AAATTACCATTTTACCCCTGAATCTTTAAAATTCCATTTTTAACCCCGATTTCACTAA
Found at i:8451730 original size:69 final size:68
Alignment explanation
Indices: 8451615--8452295 Score: 1085
Period size: 69 Copynumber: 9.9 Consensus size: 68
8451605 ATCATTTCCA
*
8451615 ATCCGCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
8451680 GTC
66 GTC
* *
8451683 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
*
8451748 TGTC
65 CGTC
* * * * *
8451752 ATCCCCTTAAAATTTAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAAT
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
8451817 GTC
66 GTC
* *
8451820 ATCCGT-TTGAAATTGAAGTAGAGTGGGTAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
1 ATCC-TCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
8451884 CGTC
65 CGTC
* *
8451888 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACAGGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
*
8451953 TGTC
65 CGTC
* *
8451957 ATCCTCTTGAAATTGAAGTAGAGAGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGAGCAAC
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
8452022 GTC
66 GTC
* *
8452025 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACAGGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
*
8452090 TGTC
65 CGTC
* *
8452094 ATCCTCTTGAAATTGAAGTAGAGAGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGAGCAAC
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
8452159 GTC
66 GTC
*
8452162 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
8452227 CGTC
65 CGTC
* *
8452231 ATCCTCTTGAAATCGAAGTAGAGTTGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
8452296 GATCATTTCC
Statistics
Matches: 567, Mismatches: 40, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
67 1 0.00
68 273 0.48
69 293 0.52
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.29
Consensus pattern (68 bp):
ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
GTC
Found at i:8451830 original size:137 final size:137
Alignment explanation
Indices: 8451615--8452295 Score: 1125
Period size: 137 Copynumber: 5.0 Consensus size: 137
8451605 ATCATTTCCA
* *
8451615 ATCCGCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
* * * *
8451679 CGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGA
66 TGTCATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGA
*
8451744 GCAATGTC
130 GCAACGTC
* * *
8451752 ATCCCCTTAAAATTTAAGTAGAG-TGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
* * *
8451816 TGTCATCCGT-TTGAAATTGAAGTAGAGTGGGTAACAAGTCTTTATCTCTGAAATTGAAGTAAGA
66 TGTCATCC-TCTTGAAATTGAAGTAGAGTGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGA
8451880 GCAACGTC
130 GCAACGTC
*
8451888 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACAGGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
*
8451953 TGTCATCCTCTTGAAATTGAAGTAGAGAGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGAG
66 TGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGAG
8452018 CAACGTC
131 CAACGTC
*
8452025 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACAGGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
*
8452090 TGTCATCCTCTTGAAATTGAAGTAGAGAGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGAG
66 TGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGAG
8452155 CAACGTC
131 CAACGTC
* *
8452162 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
* *
8452227 CGTCATCCTCTTGAAATCGAAGTAGAGTTGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGA
66 TGTCATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGA
8452292 GCAA
130 GCAA
8452296 GATCATTTCC
Statistics
Matches: 519, Mismatches: 21, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
136 63 0.12
137 415 0.80
138 41 0.08
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.29
Consensus pattern (137 bp):
ATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
TGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGAG
CAACGTC
Found at i:8451978 original size:205 final size:206
Alignment explanation
Indices: 8451615--8452295 Score: 1118
Period size: 205 Copynumber: 3.3 Consensus size: 206
8451605 ATCATTTCCA
*
8451615 ATCCGCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
8451679 CGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGA
66 CGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGA
* * * *
8451744 GCAATGTCATCCCCTTAAAATTTAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTA
131 GCAATGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTA
*
8451809 AGAGCAATGTC
196 AGAGCAACGTC
* *
8451820 ATCCGT-TTGAAATTGAAGTAGAG-TGGGTAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCA
1 ATCC-TCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCA
*
8451883 ACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAGGTCTTCATCTCTGAAATTGAAGTAAG
65 ACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAG
* *
8451948 AGCAATGTCATCCTCTTGAAATTGAAGTAGAGAGGATAACACGCCTTTATCTCTGAAATTGAAGT
130 AGCAATGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGT
8452013 AAGAGCAACGTC
195 AAGAGCAACGTC
* *
8452025 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACAGGTCTTCATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
* * * * *
8452090 TGTCATCCTCTTGAAATTGAAGTAGAG-AGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGA
66 CGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGA
* *
8452154 GCAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGT
131 GCAATGTCATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGAAGT
8452219 AAGAGCAACGTC
195 AAGAGCAACGTC
* *
8452231 ATCCTCTTGAAATCGAAGTAGAGTTGGATAACACGCCTTTATCTCTGAAATTGAAGTAAGAGCAA
1 ATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
8452296 GATCATTTCC
Statistics
Matches: 445, Mismatches: 27, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
204 1 0.00
205 277 0.62
206 167 0.38
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.29
Consensus pattern (206 bp):
ATCCTCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAGAGCAA
CGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAAGA
GCAATGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTA
AGAGCAACGTC
Found at i:8452658 original size:6 final size:6
Alignment explanation
Indices: 8452659--8452749 Score: 78
Period size: 6 Copynumber: 15.0 Consensus size: 6
8452649 TTTTAATTTT
*
8452659 ATTTAA ATTTAA ATTT-A TTTTAA ATTTAA ATTTAA TTATTTAA ATTT-A
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA --ATTTAA ATTTAA
* * ** * *
8452707 CTTTGA ATTTAA ATTTAA ATAAAA ATTAAA ACATTAA ATTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA A-TTTAA ATTTAA
8452750 CATTAAAAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
5 8 0.12
6 51 0.74
7 4 0.06
8 6 0.09
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (6 bp):
ATTTAA
Found at i:8452663 original size:28 final size:28
Alignment explanation
Indices: 8452631--8452685 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
8452621 TTTTCGTTTA
*
8452631 ATTTAAAGTTAAATTGATTTTTAATTTT
1 ATTTAAAGTTAAATTGATTTTAAATTTT
* *
8452659 ATTTAAATTTAAATTTATTTTAAATTT
1 ATTTAAAGTTAAATTGATTTTAAATTT
8452686 AAATTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (28 bp):
ATTTAAAGTTAAATTGATTTTAAATTTT
Found at i:8452680 original size:17 final size:16
Alignment explanation
Indices: 8452650--8452723 Score: 89
Period size: 17 Copynumber: 4.6 Consensus size: 16
8452640 TAAATTGATT
*
8452650 TTTAATTTTATTTAAA
1 TTTAAATTTATTTAAA
8452666 TTTAAATTTATTTTAAA
1 TTTAAATTTA-TTTAAA
*
8452683 TTTAAATTTAATT--A
1 TTTAAATTTATTTAAA
*
8452697 TTTAAATTTACTTTGAA
1 TTTAAATTTA-TTTAAA
8452714 TTTAAATTTA
1 TTTAAATTTA
8452724 AATAAAAATT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
14 11 0.22
15 2 0.04
16 11 0.22
17 27 0.53
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (16 bp):
TTTAAATTTATTTAAA
Found at i:8454502 original size:162 final size:161
Alignment explanation
Indices: 8454257--8454574 Score: 512
Period size: 162 Copynumber: 2.0 Consensus size: 161
8454247 GCATTCAATT
* *
8454257 TAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCATTTTTTGGATCATTTCTGCAT
1 TAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCACTTTTTGGATCATTTATGCAT
*
8454322 TTAGTCCCTGACATTTTTAATTTGTTTTAATTTAATCCCCAAATCAAC-TTTATTTTCATTACGA
66 TTAGTCCCTGACATTTTTAATTTGTTTTAATTTAAT-CCCAAATCAACTTTTA-TTTAATTACGA
* * *
8454386 AATTGGCCCAATAATTTTTCAAGGTTTATAAAC
129 AATTGGCCCAAGAAGTTTTCAAGATTTATAAAC
*
8454419 TAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCACTTTTTGGATTATTTATGCAT
1 TAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCACTTTTTGGATCATTTATGCAT
* ***
8454484 TTAGTCCTTTTTATTTTTAATTTGTTTTAATTTAATCCCAAATCAACTTTTATTTAATTACGAAA
66 TTAGTCCCTGACATTTTTAATTTGTTTTAATTTAATCCCAAATCAACTTTTATTTAATTACGAAA
8454549 TTGGCCCAAGAAGTTTTCAAGATTTA
131 TTGGCCCAAGAAGTTTTCAAGATTTA
8454575 CAATTTAATC
Statistics
Matches: 144, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
161 46 0.32
162 98 0.68
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.43
Consensus pattern (161 bp):
TAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCACTTTTTGGATCATTTATGCAT
TTAGTCCCTGACATTTTTAATTTGTTTTAATTTAATCCCAAATCAACTTTTATTTAATTACGAAA
TTGGCCCAAGAAGTTTTCAAGATTTATAAAC
Found at i:8454767 original size:29 final size:29
Alignment explanation
Indices: 8454735--8454893 Score: 103
Period size: 29 Copynumber: 5.4 Consensus size: 29
8454725 AAAATTATCA
8454735 TTTTACCCCTGAATCTTCTAAAATTCCAT
1 TTTTACCCCTGAATCTTCTAAAATTCCAT
* **
8454764 TTTTAACCCC-GATTTCACCTAAAATTACCA-
1 TTTT-ACCCCTGA-ATCTTCTAAAATT-CCAT
* *
8454794 TTTTACCCTTGAA-CTTTCCAAAATTCCAT
1 TTTTACCCCTGAATC-TTCTAAAATTCCAT
* ** *
8454823 TTTTAACCCC-GATTTCACCGAAAATTACCA-
1 TTTT-ACCCCTGA-ATCTTCTAAAATT-CCAT
* * *
8454853 TTTTACCCCCGTATCTTTTAAAATTCCAT
1 TTTTACCCCTGAATCTTCTAAAATTCCAT
*
8454882 TTTTAACCCTGA
1 TTTTACCCCTGA
8454894 TTTTACCAAA
Statistics
Matches: 96, Mismatches: 22, Indels: 24
0.68 0.15 0.17
Matches are distributed among these distances:
28 7 0.07
29 45 0.47
30 37 0.39
31 7 0.07
ACGTcount: A:0.29, C:0.28, G:0.04, T:0.38
Consensus pattern (29 bp):
TTTTACCCCTGAATCTTCTAAAATTCCAT
Found at i:8454788 original size:59 final size:58
Alignment explanation
Indices: 8454725--8454919 Score: 275
Period size: 59 Copynumber: 3.3 Consensus size: 58
8454715 GAAACTTCCG
*
8454725 AAAATTATCATTTTACCCCTGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACC
1 AAAATTACCATTTTACCCCTGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACC
* *
8454783 TAAAATTACCATTTTACCCTTGAA-CTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
1 -AAAATTACCATTTTACCCCTGAATC-TTCTAAAATTCCATTTTTAACCCCGATTTCACC
* * * * *
8454842 GAAAATTACCATTTTACCCCCGTATCTTTTAAAATTCCATTTTTAACCCTGATTTTACC
1 -AAAATTACCATTTTACCCCTGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACC
*
8454901 AAAATTACCATTTTGCCCC
1 AAAATTACCATTTTACCCC
8454920 CGGGTATCCA
Statistics
Matches: 122, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
58 19 0.16
59 102 0.84
60 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.04, T:0.38
Consensus pattern (58 bp):
AAAATTACCATTTTACCCCTGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCACC
Found at i:8454904 original size:29 final size:30
Alignment explanation
Indices: 8454754--8454914 Score: 142
Period size: 30 Copynumber: 5.5 Consensus size: 30
8454744 TGAATCTTCT
*
8454754 AAAATT-CCATTTTTAACCCCGATTTCACC
1 AAAATTACCATTTTTAACCCCGATTTTACC
* *
8454783 TAAAATTACCA-TTTT-ACCCTTGAACTTT-CC
1 -AAAATTACCATTTTTAACCC-CG-ATTTTACC
*
8454813 AAAATT-CCATTTTTAACCCCGATTTCACC
1 AAAATTACCATTTTTAACCCCGATTTTACC
* *
8454842 GAAAATTACCA-TTTTACCCCCGTATCTTT--T
1 -AAAATTACCATTTTTAACCCCG-AT-TTTACC
*
8454872 AAAATT-CCATTTTTAACCCTGATTTTACC
1 AAAATTACCATTTTTAACCCCGATTTTACC
8454901 AAAATTACCATTTT
1 AAAATTACCATTTT
8454915 GCCCCCGGGT
Statistics
Matches: 105, Mismatches: 12, Indels: 28
0.72 0.08 0.19
Matches are distributed among these distances:
27 3 0.03
28 11 0.10
29 38 0.36
30 40 0.38
31 11 0.10
32 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.39
Consensus pattern (30 bp):
AAAATTACCATTTTTAACCCCGATTTTACC
Found at i:8454942 original size:58 final size:57
Alignment explanation
Indices: 8454722--8454956 Score: 224
Period size: 59 Copynumber: 4.0 Consensus size: 57
8454712 CCCGAAACTT
* * *
8454722 CCGAAAATTATCATTTTA-CCCCTGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCA
1 CCGAAAATTACCATTTTACCCCCGGTATC--C-AAAATTCCATTTTTAACCCCGATTTCA
* ** * *
8454781 CCTAAAATTACCATTTTACCCTTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
1 CCGAAAATTACCATTTTACCCCCG--GTATCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
8454840 CCGAAAATTACCATTTTACCCCC-GTATCTTTTAAAATTCCATTTTTAACCCTGATTTTA
1 CCGAAAATTACCATTTTACCCCCGGTATC---CAAAATTCCATTTTTAACCCCGATTTCA
* * * *
8454899 CC-AAAATTACCATTTTGCCCCCGGGTATCCACAAGTCCTATTTTTCACCCCGATTTCA
1 CCGAAAATTACCATTTTACCCCC-GGTATCCAAAATTCC-ATTTTTAACCCCGATTTCA
8454957 TCGTTTATCA
Statistics
Matches: 144, Mismatches: 23, Indels: 19
0.77 0.12 0.10
Matches are distributed among these distances:
56 3 0.02
57 6 0.04
58 35 0.24
59 90 0.62
60 8 0.06
62 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.06, T:0.37
Consensus pattern (57 bp):
CCGAAAATTACCATTTTACCCCCGGTATCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:8459173 original size:59 final size:59
Alignment explanation
Indices: 8459087--8459274 Score: 228
Period size: 59 Copynumber: 3.2 Consensus size: 59
8459077 TCCGGGGGCA
* * *
8459087 AAAATGG-AATTTTGGTGAAA-TCGGGGTTAAAAATGGGATTTTGGAAAG-TTCGAGGGT
1 AAAATGGTAATTTTGGTGAAATTCAGGGTTAAAAATGGAATTTTGGAAAGTTTAG-GGGT
*
8459144 AAAATGGTAATTTTTGGTGAAATTC-GGGTTAAAAATGAAATTTTGGAAAGTTTAGGGGT
1 AAAATGGTAA-TTTTGGTGAAATTCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGT
* *
8459203 AAAATGTTAA-TTT--TGAAAGTTTCAGGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGT
1 AAAATGGTAATTTTGGTGAAA--TTCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGT
*
8459261 AAAATAGTAATTTT
1 AAAATGGTAATTTT
8459275 TGAATTTCAA
Statistics
Matches: 115, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
55 5 0.04
57 13 0.11
58 42 0.37
59 50 0.43
60 5 0.04
ACGTcount: A:0.36, C:0.03, G:0.27, T:0.34
Consensus pattern (59 bp):
AAAATGGTAATTTTGGTGAAATTCAGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGT
Found at i:8459186 original size:30 final size:29
Alignment explanation
Indices: 8459086--8459189 Score: 108
Period size: 29 Copynumber: 3.6 Consensus size: 29
8459076 CTCCGGGGGC
8459086 AAAAATGGAATTTTGGTGAAA-TCGGGGTT
1 AAAAATGGAATTTTGGTGAAATTC-GGGTT
* *
8459115 AAAAATGGGATTTT-G-GAAAGTTCGAGGGT
1 AAAAATGGAATTTTGGTGAAA-TTCG-GGTT
8459144 -AAAATGGTAATTTTTGGTGAAATTCGGGTT
1 AAAAATGG-AA-TTTTGGTGAAATTCGGGTT
*
8459174 AAAAATGAAATTTTGG
1 AAAAATGGAATTTTGG
8459190 AAAGTTTAGG
Statistics
Matches: 62, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
27 4 0.06
28 9 0.15
29 25 0.40
30 9 0.15
31 11 0.18
32 4 0.06
ACGTcount: A:0.36, C:0.03, G:0.29, T:0.33
Consensus pattern (29 bp):
AAAAATGGAATTTTGGTGAAATTCGGGTT
Found at i:8459205 original size:29 final size:29
Alignment explanation
Indices: 8459173--8459264 Score: 118
Period size: 29 Copynumber: 3.2 Consensus size: 29
8459163 AAATTCGGGT
8459173 TAAAAATGAAATTTTGGAAAGTTTAGGGG
1 TAAAAATGAAATTTTGGAAAGTTTAGGGG
*
8459202 T-AAAATGTTAATTTT-GAAAGTTTCA-GGG
1 TAAAAATG-AAATTTTGGAAAGTTT-AGGGG
*
8459230 TCAAAAATGGAATTTTGGAAAGTTTAGGGG
1 T-AAAAATGAAATTTTGGAAAGTTTAGGGG
8459260 TAAAA
1 TAAAA
8459265 TAGTAATTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
28 18 0.33
29 19 0.35
30 18 0.33
ACGTcount: A:0.40, C:0.02, G:0.25, T:0.33
Consensus pattern (29 bp):
TAAAAATGAAATTTTGGAAAGTTTAGGGG
Found at i:8459272 original size:29 final size:29
Alignment explanation
Indices: 8459182--8459274 Score: 113
Period size: 29 Copynumber: 3.2 Consensus size: 29
8459172 TTAAAAATGA
8459182 AATTTTGGAAAGTTTAGGGGTAAAAT-GTT
1 AATTTTGGAAAGTTTAGGGGTAAAATAG-T
*
8459211 AATTTT-GAAAGTTTCA-GGGTCAAAA-ATGG
1 AATTTTGGAAAGTTT-AGGGGT-AAAATA-GT
8459240 AATTTTGGAAAGTTTAGGGGTAAAATAGT
1 AATTTTGGAAAGTTTAGGGGTAAAATAGT
8459269 AATTTT
1 AATTTT
8459275 TGAATTTCAA
Statistics
Matches: 55, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
28 12 0.22
29 29 0.53
30 14 0.25
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.37
Consensus pattern (29 bp):
AATTTTGGAAAGTTTAGGGGTAAAATAGT
Found at i:8459739 original size:17 final size:16
Alignment explanation
Indices: 8459717--8459779 Score: 63
Period size: 17 Copynumber: 3.8 Consensus size: 16
8459707 TTTTAAATGT
8459717 ATTTAAATTCAAAACAA
1 ATTTAAATT-AAAACAA
* *
8459734 ATTTAAATTTAAATAA
1 ATTTAAATTAAAACAA
**
8459750 ATTTAAAATTAATTCAA
1 ATTT-AAATTAAAACAA
*
8459767 ACTTAAATTAAAA
1 ATTTAAATTAAAA
8459780 TCCAAGTTGG
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
16 16 0.44
17 20 0.56
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (16 bp):
ATTTAAATTAAAACAA
Found at i:8459763 original size:27 final size:27
Alignment explanation
Indices: 8459701--8459774 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
8459691 TTTAAGTTTC
* * **
8459701 AAATTATTTTAAATGTATTTAAATTCA
1 AAATTAATTTAAATTTAAATAAATTCA
** *
8459728 AAACAAATTTAAATTTAAATAAATTTA
1 AAATTAATTTAAATTTAAATAAATTCA
* *
8459755 AAATTAATTCAAACTTAAAT
1 AAATTAATTTAAATTTAAAT
8459775 TAAAATCCAA
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (27 bp):
AAATTAATTTAAATTTAAATAAATTCA
Found at i:8461135 original size:36 final size:36
Alignment explanation
Indices: 8461088--8461159 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
8461078 ACTTGATTAA
8461088 AATCATCTTAACTTGATTAAAAAAATTTCTAAGAGT
1 AATCATCTTAACTTGATTAAAAAAATTTCTAAGAGT
* *
8461124 AATCATTTTAACTTGATTAAAAAATTTTCTAAGAGT
1 AATCATCTTAACTTGATTAAAAAAATTTCTAAGAGT
8461160 TTCAATTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (36 bp):
AATCATCTTAACTTGATTAAAAAAATTTCTAAGAGT
Found at i:8461169 original size:35 final size:36
Alignment explanation
Indices: 8461095--8461169 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
8461085 TAAAATCATC
*
8461095 TTAACTTGATTAAAAAAATTTCTAAGAGTAATCATT
1 TTAACTTGATTAAAAAAATTTCTAAGAGTAATCAAT
* *
8461131 TTAACTTGATTAAAAAATTTTCTAAGAGT-TTCAAT
1 TTAACTTGATTAAAAAAATTTCTAAGAGTAATCAAT
8461166 TTAA
1 TTAA
8461170 GGATTGACAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
35 8 0.22
36 28 0.78
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (36 bp):
TTAACTTGATTAAAAAAATTTCTAAGAGTAATCAAT
Found at i:8461583 original size:46 final size:46
Alignment explanation
Indices: 8461509--8461602 Score: 118
Period size: 46 Copynumber: 2.0 Consensus size: 46
8461499 ACATAAATAC
* * *
8461509 AATCGAAATAGAAGAGAAGAGATGAAGGATTTGAAAT-GATTTCAA
1 AATCAAAATAGAAGAGAAGAGATAAAGGATATGAAATGGATTTCAA
* * *
8461554 AATCAAAATAGTAGTAGCAGAGATAAAGGATATGAAATGGGTTTCAA
1 AATCAAAATAGAAG-AGAAGAGATAAAGGATATGAAATGGATTTCAA
8461601 AA
1 AA
8461603 CCCTAATATT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 12 0.29
46 20 0.49
47 9 0.22
ACGTcount: A:0.49, C:0.05, G:0.23, T:0.22
Consensus pattern (46 bp):
AATCAAAATAGAAGAGAAGAGATAAAGGATATGAAATGGATTTCAA
Found at i:8461681 original size:16 final size:19
Alignment explanation
Indices: 8461661--8461701 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 19
8461651 TTAATTACAC
8461661 AATAAATTAA-AT-TTTTT
1 AATAAATTAATATGTTTTT
8461678 -ATAAA-TAATATGTTTTT
1 AATAAATTAATATGTTTTT
8461695 AATAAAT
1 AATAAAT
8461702 AAACAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
15 3 0.15
16 7 0.35
17 5 0.25
18 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
AATAAATTAATATGTTTTT
Found at i:8461699 original size:18 final size:16
Alignment explanation
Indices: 8461661--8461704 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 16
8461651 TTAATTACAC
8461661 AATAAATTAAATTTTTT
1 AATAAA-TAAATTTTTT
8461678 -ATAAATAATATGTTTTT
1 AATAAATAA-AT-TTTTT
8461695 AATAAATAAA
1 AATAAATAAA
8461705 CAAAATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 3 0.12
16 7 0.29
17 6 0.25
18 8 0.33
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
AATAAATAAATTTTTT
Found at i:8462101 original size:29 final size:30
Alignment explanation
Indices: 8462037--8462092 Score: 96
Period size: 29 Copynumber: 1.9 Consensus size: 30
8462027 ACTTAAGCAT
8462037 ACTTTAGGTACTAAATTAAAAAATAAATAA
1 ACTTTAGGTACTAAATTAAAAAATAAATAA
*
8462067 ACTTTAGGTAC-AATTTAAAAAATAAA
1 ACTTTAGGTACTAAATTAAAAAATAAA
8462093 ACCCTTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.30
Consensus pattern (30 bp):
ACTTTAGGTACTAAATTAAAAAATAAATAA
Found at i:8462187 original size:14 final size:14
Alignment explanation
Indices: 8462168--8462194 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8462158 AATAGTGGTA
8462168 TAGTTGGAAGGCTT
1 TAGTTGGAAGGCTT
8462182 TAGTTGGAAGGCT
1 TAGTTGGAAGGCT
8462195 CCAGCCTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.37, T:0.33
Consensus pattern (14 bp):
TAGTTGGAAGGCTT
Found at i:8482470 original size:40 final size:40
Alignment explanation
Indices: 8482399--8482478 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
8482389 ATTAATTGAT
* **
8482399 AAGTCATTGCATTAATGTCATGCTAAATCTGATAAGTGTA
1 AAGTCATTGCAGTAATGTCACACTAAATCTGATAAGTGTA
* *
8482439 AAGTCATTGCAGTAGTGTCACAC-AAAGTCTGATCAGTGTA
1 AAGTCATTGCAGTAATGTCACACTAAA-TCTGATAAGTGTA
8482479 TACTAGTAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.09
40 31 0.91
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (40 bp):
AAGTCATTGCAGTAATGTCACACTAAATCTGATAAGTGTA
Found at i:8483621 original size:20 final size:20
Alignment explanation
Indices: 8483596--8483635 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8483586 ATTCCTAGGG
8483596 AAGATAAGATAGAATTATTT
1 AAGATAAGATAGAATTATTT
* *
8483616 AAGATAAGTTAGCATTATTT
1 AAGATAAGATAGAATTATTT
8483636 TTATTTTCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.38
Consensus pattern (20 bp):
AAGATAAGATAGAATTATTT
Found at i:8495572 original size:17 final size:18
Alignment explanation
Indices: 8495552--8495587 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8495542 TTTTTAAAAA
8495552 TATAAAT-TTTGGAATTT
1 TATAAATATTTGGAATTT
*
8495569 TATAAATATTTTGAATTT
1 TATAAATATTTGGAATTT
8495587 T
1 T
8495588 TTTTGTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (18 bp):
TATAAATATTTGGAATTT
Found at i:8501139 original size:26 final size:29
Alignment explanation
Indices: 8501097--8501162 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
8501087 TAAGATGAAT
8501097 ATATATAAAAAATTT-A-A-TAAATTAAA
1 ATATATAAAAAATTTAATATTAAATTAAA
* *
8501123 ATATATAAAATTATTAAATATTAAATTAAA
1 ATATATAAAA-AATTTAATATTAAATTAAA
8501153 ATAATATAAA
1 AT-ATATAAA
8501163 TATTGTTACT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
26 10 0.30
27 3 0.09
28 1 0.03
29 1 0.03
30 11 0.33
31 7 0.21
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (29 bp):
ATATATAAAAAATTTAATATTAAATTAAA
Found at i:8501163 original size:15 final size:14
Alignment explanation
Indices: 8501113--8501163 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 14
8501103 AAAAAATTTA
8501113 ATAAATTAAAATAT
1 ATAAATTAAAATAT
8501127 ATAAAATTATTAAATAT
1 AT-AAATTA--AAATAT
8501144 -TAAATTAAAATAAT
1 ATAAATTAAAAT-AT
8501158 ATAAAT
1 ATAAAT
8501164 ATTGTTACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
13 4 0.12
14 4 0.12
15 17 0.53
16 1 0.03
17 6 0.19
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATAAATTAAAATAT
Found at i:8502267 original size:14 final size:15
Alignment explanation
Indices: 8502243--8502271 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8502233 GTACCAAATT
8502243 ATATAAAAAATTAAA
1 ATATAAAAAATTAAA
8502258 ATAT-AAAAATTAAA
1 ATATAAAAAATTAAA
8502272 TTTGTGTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
ATATAAAAAATTAAA
Found at i:8502709 original size:25 final size:23
Alignment explanation
Indices: 8502679--8502727 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
8502669 TTTAATGAAA
*
8502679 AAAGACTTAATATTTATTTTTAATT
1 AAAGAC-TAA-ATTAATTTTTAATT
*
8502704 AAAGACTGAATTAATTTTTAATT
1 AAAGACTAAATTAATTTTTAATT
8502727 A
1 A
8502728 TTTTATAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 14 0.64
24 2 0.09
25 6 0.27
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (23 bp):
AAAGACTAAATTAATTTTTAATT
Found at i:8506564 original size:27 final size:27
Alignment explanation
Indices: 8506532--8506593 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
8506522 CCATAGAATT
*
8506532 TCACTTAAAGTGTTATTGTTTAATTAA
1 TCACTTAAAGTGTTATTATTTAATTAA
8506559 TCACTTAAAGTGTTATTATTTAATTAA
1 TCACTTAAAGTGTTATTATTTAATTAA
*
8506586 TCAATTAA
1 TCACTTAA
8506594 TGACATCAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (27 bp):
TCACTTAAAGTGTTATTATTTAATTAA
Found at i:8508530 original size:16 final size:15
Alignment explanation
Indices: 8508498--8508540 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
8508488 GTTAGGACGC
*
8508498 CTTTTCTTTCTTTTT
1 CTTTTTTTTCTTTTT
*
8508513 CTTTTTTTTTTTTATT
1 CTTTTTTTTCTTT-TT
*
8508529 CTTTTTGTTCTT
1 CTTTTTTTTCTT
8508541 GATGATTACT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.81
Consensus pattern (15 bp):
CTTTTTTTTCTTTTT
Found at i:8509616 original size:39 final size:38
Alignment explanation
Indices: 8509572--8509683 Score: 145
Period size: 39 Copynumber: 2.9 Consensus size: 38
8509562 ACGTTGAAAA
8509572 TATACTGAATCGACAGTGACACTGTAAACACTACAATGC
1 TATACTGAA-CGACAGTGACACTGTAAACACTACAATGC
8509611 TATACTGAACTGACAGTGACACTGTAAACA-TCACAATGC
1 TATACTGAAC-GACAGTGACACTGTAAACACT-ACAATGC
* ** *
8509650 TAAACTGAAGCGGTAGTGACACTGTAAATACTAC
1 TATACTGAA-CGACAGTGACACTGTAAACACTAC
8509684 CAGGCTATTA
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
38 2 0.03
39 61 0.94
40 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.23
Consensus pattern (38 bp):
TATACTGAACGACAGTGACACTGTAAACACTACAATGC
Found at i:8511220 original size:14 final size:13
Alignment explanation
Indices: 8511197--8511235 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
8511187 AAATCAACTA
8511197 TTTTTTTATATAT
1 TTTTTTTATATAT
8511210 TTTTCTTTATATAT
1 TTTT-TTTATATAT
*
8511224 AATTTTTTATAT
1 -TTTTTTTATAT
8511236 GTGAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 4 0.17
14 16 0.70
15 3 0.13
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTTTATATAT
Found at i:8513939 original size:25 final size:25
Alignment explanation
Indices: 8513902--8513949 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
8513892 GATCAGGATA
* *
8513902 AAAAAATTAAG-AATTAAAATAAAT
1 AAAAAATAAAGAAACTAAAATAAAT
8513926 AAAAAATAATAGAAACTAAAATAA
1 AAAAAATAA-AGAAACTAAAATAA
8513950 TATTTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 2 0.10
26 10 0.50
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (25 bp):
AAAAAATAAAGAAACTAAAATAAAT
Found at i:8516866 original size:30 final size:31
Alignment explanation
Indices: 8516832--8516897 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
8516822 GTTAAATAAA
*
8516832 AAAATTTAATATATCATAATA-A-TTTATGAG
1 AAAATTTAATATAGC-TAATATAGTTTATGAG
* *
8516862 AAAA-TTATTCTAGCTAATATAGTTTATGAG
1 AAAATTTAATATAGCTAATATAGTTTATGAG
8516892 AAAATT
1 AAAATT
8516898 GTCTATTTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 5 0.17
29 8 0.27
30 16 0.53
31 1 0.03
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.39
Consensus pattern (31 bp):
AAAATTTAATATAGCTAATATAGTTTATGAG
Found at i:8518997 original size:163 final size:160
Alignment explanation
Indices: 8518717--8519046 Score: 473
Period size: 163 Copynumber: 2.0 Consensus size: 160
8518707 AATGGTAATA
*
8518717 CTTACCTTTAAGAACTTTAGCTAAAAGTGAATTAGAATTCTGTAGTAAACGTCCCTATTTCTCAA
1 CTTACCTTTAAGAACTTTAGCTAAAAGTGAATTAGAATTCTGCAGTAAACGTCCCTATTTCTCAA
* * *
8518782 GAAGGGAAATGTTAAACATACTGAAACTGCGAAAACCCAACCCATCGTTTTCTTTGGAATTACAA
66 AAAGGGAAATATTAAACAGACTGAAACTGCGAAAACCCAACCCATCGTTTTCTTTGGAATTACAA
* *
8518847 ATTTTATCCCACTTGCTCAAATGAAAACCC
131 ATTTTATCCCACTCGCACAAATGAAAACCC
* *
8518877 CTTACCTTTAAGAACTTTAGCTAAAAGTGAATTAGGATTTTGCAGTAAACGTCAACCCTATTTCT
1 CTTACCTTTAAGAACTTTAGCTAAAAGTGAATTAGAATTCTGCAGTAAACGT---CCCTATTTCT
* * * * *
8518942 TAAAAAGGGAAGTATTAAACAGATTGAAATTGCGAAAACCCAACCCA-CTGTTTTCTTTGGACTT
63 CAAAAAGGGAAATATTAAACAGACTGAAACTGCGAAAACCCAACCCATC-GTTTTCTTTGGAATT
* *
8519006 ACAAATTTTATCCTACTCGCACAAATGAATACCC
127 ACAAATTTTATCCCACTCGCACAAATGAAAACCC
8519040 CATTACC
1 C-TTACC
8519047 CTTGCCCTTT
Statistics
Matches: 150, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
160 49 0.33
162 1 0.01
163 95 0.63
164 5 0.03
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.30
Consensus pattern (160 bp):
CTTACCTTTAAGAACTTTAGCTAAAAGTGAATTAGAATTCTGCAGTAAACGTCCCTATTTCTCAA
AAAGGGAAATATTAAACAGACTGAAACTGCGAAAACCCAACCCATCGTTTTCTTTGGAATTACAA
ATTTTATCCCACTCGCACAAATGAAAACCC
Found at i:8523992 original size:58 final size:56
Alignment explanation
Indices: 8523918--8524070 Score: 159
Period size: 59 Copynumber: 2.6 Consensus size: 56
8523908 GGATATTTCG
*
8523918 AGGTAAAATGGTAATTTTAGTGAAATTAAGGTTAAAAAT-AGAATTTT-GAAAAGTTTA
1 AGGTAAAATGGTAATTTT-GTGAAATTAAGGTAAAAAATGA-AATTTTGGAAAA-TTTA
* * *
8523975 ATGGTAAAATGGTAATTTTTGATAAAATTGAGGTAAAAAATGAAATTTTGGAAAATTTG
1 A-GGTAAAATGGTAA-TTTTG-TGAAATTAAGGTAAAAAATGAAATTTTGGAAAATTTA
*
8524034 AGGTTAAAATGG-AATTTTGGGAAATTTTAAGGTAAAA
1 AGG-TAAAATGGTAATTTTGTGAAA--TTAAGGTAAAA
8524071 TGGTAATTTT
Statistics
Matches: 81, Mismatches: 7, Indels: 15
0.79 0.07 0.15
Matches are distributed among these distances:
56 3 0.04
57 6 0.07
58 28 0.35
59 38 0.47
60 6 0.07
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (56 bp):
AGGTAAAATGGTAATTTTGTGAAATTAAGGTAAAAAATGAAATTTTGGAAAATTTA
Found at i:8524022 original size:59 final size:57
Alignment explanation
Indices: 8523918--8524070 Score: 159
Period size: 58 Copynumber: 2.6 Consensus size: 57
8523908 GGATATTTCG
* *
8523918 AGGTAAAATGGTAATTTTAGTGAAATTAAGGTTAAAAATAGAATTTT-GAAAAGTTTA
1 AGGTAAAATGGTAATTTTAGTAAAATTAAGGTAAAAAATAGAATTTTGGAAAA-TTTA
* * *
8523975 ATGGTAAAATGGTAATTTTTGATAAAATTGAGGTAAAAAAT-GAAATTTTGGAAAATTTG
1 A-GGTAAAATGGTAATTTTAG-TAAAATTAAGGTAAAAAATAG-AATTTTGGAAAATTTA
* * *
8524034 AGGTTAAAATGG-AATTTTGGGAAATTTTAAGGTAAAA
1 AGG-TAAAATGGTAATTTTAGTAAA-ATTAAGGTAAAA
8524071 TGGTAATTTT
Statistics
Matches: 81, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
57 4 0.05
58 38 0.47
59 34 0.42
60 5 0.06
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (57 bp):
AGGTAAAATGGTAATTTTAGTAAAATTAAGGTAAAAAATAGAATTTTGGAAAATTTA
Found at i:8524049 original size:87 final size:88
Alignment explanation
Indices: 8523946--8524148 Score: 250
Period size: 87 Copynumber: 2.3 Consensus size: 88
8523936 AGTGAAATTA
* *
8523946 AGGTTAAAAATAGAATTTT-GAAAAGTTTAATGGTAAAATGGTAATTTTTGATAAAATTGAGGTA
1 AGGTTAAAAATAGAATTTTGGAAAAGTTTAA-GGTAAAATGGTAATTTTTGATAAAATTAAAGTA
8524010 AAAAATGAAATTTTGGAAAATTTG
65 AAAAATGAAATTTTGGAAAATTTG
* * * * *
8524034 AGGTT-AAAATGGAATTTTGGGAAATTTTAAGGTAAAATGGTAATTTTTGGTAAAATTAAAGTTA
1 AGGTTAAAAATAGAATTTTGGAAAAGTTTAAGGTAAAATGGTAATTTTTGATAAAATTAAAGTAA
* *
8524098 AAAATGGAATTTTGGAAAACTTG
66 AAAATGAAATTTTGGAAAATTTG
* * * **
8524121 -GGGTAAAAACATAATTTTTAAAAAGTTT
1 AGGTTAAAAATAGAATTTTGGAAAAGTTT
8524149 TAGGGTTAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
86 3 0.03
87 79 0.82
88 14 0.15
ACGTcount: A:0.44, C:0.01, G:0.20, T:0.35
Consensus pattern (88 bp):
AGGTTAAAAATAGAATTTTGGAAAAGTTTAAGGTAAAATGGTAATTTTTGATAAAATTAAAGTAA
AAAATGAAATTTTGGAAAATTTG
Found at i:8524082 original size:58 final size:56
Alignment explanation
Indices: 8523921--8524198 Score: 158
Period size: 59 Copynumber: 4.8 Consensus size: 56
8523911 TATTTCGAGG
*
8523921 TAAAATGGTAATTTTAGTGAAA-TTAAGGTTAAAAATAG-AA-TTTT-GAAAAGTTTAATGG-
1 TAAAATGG-AATTTT-GGGAAATTTAAGG-T-AAAAT-GTAATTTTTGGAAAA-TTTAA-GGT
** * * * *
8523979 TAAAATGGTAATTTTTGATAAAATTGAGGTAAAAAATG-AAATTTTGGAAAATTTGAGGT
1 TAAAATGG-AA-TTTTGGGAAATTTAAGGT--AAAATGTAATTTTTGGAAAATTTAAGGT
*
8524038 TAAAATGGAATTTTGGGAAATTTTAAGGTAAAATGGTAATTTTTGGTAAAA-TTAAAGT
1 TAAAATGGAATTTTGGGAAA-TTTAAGGTAAAAT-GTAATTTTTGG-AAAATTTAAGGT
* * ** ** * *
8524096 TAAAAATGGAATTTTGGAAAACTTGGGGTAAAAACATAATTTTT-AAAAAGTTTTAGGGT
1 T-AAAATGGAATTTTGGGAAATTTAAGGT-AAAATGTAATTTTTGGAAAA--TTTAAGGT
**
8524155 TAAAATATAATTTTGGAGAAATTTATAGGTAAAATGTAATTTTT
1 TAAAATGGAATTTTGG-GAAATTTA-AGGTAAAATGTAATTTTT
8524199 ATCAATTTTT
Statistics
Matches: 175, Mismatches: 28, Indels: 33
0.74 0.12 0.14
Matches are distributed among these distances:
56 9 0.05
57 9 0.05
58 69 0.39
59 80 0.46
60 8 0.05
ACGTcount: A:0.43, C:0.01, G:0.19, T:0.37
Consensus pattern (56 bp):
TAAAATGGAATTTTGGGAAATTTAAGGTAAAATGTAATTTTTGGAAAATTTAAGGT
Found at i:8524129 original size:29 final size:28
Alignment explanation
Indices: 8523904--8524129 Score: 142
Period size: 29 Copynumber: 7.8 Consensus size: 28
8523894 AAACAAGATT
*
8523904 TTTTGG-ATATTTCGAGGT-AAAATGGTAA
1 TTTTGGAAAATTT-GAGGTAAAAATGG-AA
* *
8523932 TTTTAGTG-AAA-TTAAGGTTAAAAATAGAA
1 TTTT-G-GAAAATTTGAGG-TAAAAATGGAA
*
8523961 TTTT-GAAAAGTTTAATGGT-AAAATGGTAA
1 TTTTGGAAAA-TTTGA-GGTAAAAATGG-AA
* * *
8523990 TTTTTGATAAAATTGAGGTAAAAAATGAAA
1 TTTTGGA-AAATTTGAGGT-AAAAATGGAA
*
8524020 TTTTGGAAAATTTGAGGTTAAAATGGAA
1 TTTTGGAAAATTTGAGGTAAAAATGGAA
* *
8524048 TTTTGGGAAATTTTAAGGT-AAAATGGTAA
1 TTTT-GGAAAATTTGAGGTAAAAATGG-AA
** *
8524077 TTTTTGGTAAAATTAAAGTTAAAAATGGAA
1 -TTTTGG-AAAATTTGAGGTAAAAATGGAA
* *
8524107 TTTTGGAAAACTTGGGGTAAAAA
1 TTTTGGAAAATTTGAGGTAAAAA
8524130 CATAATTTTT
Statistics
Matches: 159, Mismatches: 21, Indels: 36
0.74 0.10 0.17
Matches are distributed among these distances:
26 1 0.01
27 3 0.02
28 44 0.28
29 56 0.35
30 39 0.25
31 16 0.10
ACGTcount: A:0.42, C:0.01, G:0.21, T:0.36
Consensus pattern (28 bp):
TTTTGGAAAATTTGAGGTAAAAATGGAA
Found at i:8524157 original size:59 final size:58
Alignment explanation
Indices: 8524105--8524327 Score: 225
Period size: 60 Copynumber: 3.8 Consensus size: 58
8524095 TTAAAAATGG
* **
8524105 AATTTTGGA-AAACTTGGGGTAAAAACATAATTTTTAAAAAGTTTTAGGGTTAAAATAT
1 AATTTTGGAGAAATTTGGGGT-AAAATGTAATTTTTAAAAAGTTTTAGGGTTAAAATAT
** ** *
8524163 AATTTTGGAGAAATTTATAGGTAAAATGTAATTTTTATCAATTTTTAGGGTTAAAATAT
1 AATTTTGGAGAAATTT-GGGGTAAAATGTAATTTTTAAAAAGTTTTAGGGTTAAAATAT
* * *
8524222 AATTTTAGATAAGTTTGAGGGTTAAAATGTAATTTTTAAAAAGTTTT-GGGATTAAAATAT
1 AATTTTGGAGAAATTTG-GGG-TAAAATGTAATTTTTAAAAAGTTTTAGGG-TTAAAATAT
* * * * *
8524282 AATTTTGAAGAAGTTTTGGGGTTAAAATATTATTTTTAAATAGTTT
1 AATTTTGGAGAA-ATTTGGGG-TAAAATGTAATTTTTAAAAAGTTT
8524328 AGGAACTTTC
Statistics
Matches: 136, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
58 9 0.07
59 55 0.40
60 68 0.50
61 4 0.03
ACGTcount: A:0.39, C:0.01, G:0.17, T:0.42
Consensus pattern (58 bp):
AATTTTGGAGAAATTTGGGGTAAAATGTAATTTTTAAAAAGTTTTAGGGTTAAAATAT
Found at i:8524166 original size:30 final size:30
Alignment explanation
Indices: 8524121--8524327 Score: 199
Period size: 30 Copynumber: 6.9 Consensus size: 30
8524111 GGAAAACTTG
* *
8524121 GGGTAAAAACATAATTTTTAAAAAGTTTTA
1 GGGTTAAAATATAATTTTTAAAAAGTTTTA
* *
8524151 GGGTTAAAATATAATTTTGGAGAAA-TTTATA
1 GGGTTAAAATATAATTTT-TAAAAAGTTT-TA
* ** *
8524182 -GG-TAAAATGTAATTTTTATCAATTTTTA
1 GGGTTAAAATATAATTTTTAAAAAGTTTTA
* *
8524210 GGGTTAAAATATAA-TTTTAGATAAGTTTGA
1 GGGTTAAAATATAATTTTTA-AAAAGTTTTA
*
8524240 GGGTTAAAATGTAATTTTTAAAAAGTTTT-
1 GGGTTAAAATATAATTTTTAAAAAGTTTTA
* * *
8524269 GGGATTAAAATATAATTTTGAAGAAGTTTTG
1 GGG-TTAAAATATAATTTTTAAAAAGTTTTA
* *
8524300 GGGTTAAAATATTATTTTTAAATAGTTT
1 GGGTTAAAATATAATTTTTAAAAAGTTT
8524328 AGGAACTTTC
Statistics
Matches: 145, Mismatches: 23, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
28 5 0.03
29 26 0.18
30 100 0.69
31 14 0.10
ACGTcount: A:0.40, C:0.01, G:0.17, T:0.43
Consensus pattern (30 bp):
GGGTTAAAATATAATTTTTAAAAAGTTTTA
Found at i:8524179 original size:29 final size:28
Alignment explanation
Indices: 8524018--8524317 Score: 137
Period size: 30 Copynumber: 10.2 Consensus size: 28
8524008 TAAAAAATGA
**
8524018 AATTTTGGAAAATTT-GAGGTTAAAATGG
1 AATTTTGGAAAATTTAG-GGTTAAAATAT
* * *
8524046 AATTTTGGGAAATTTTAAGG-TAAAATGGT
1 AATTTT-GGAAAATTTAGGGTTAAAAT-AT
**
8524075 AATTTTTGGTAAAA-TTAAAGTTAAAA-AT
1 AA-TTTTGG-AAAATTTAGGGTTAAAATAT
* * * *
8524103 GGAATTTTGGAAAACTTGGGGTAAAAACAT
1 --AATTTTGGAAAATTTAGGGTTAAAATAT
**
8524133 AATTTTTAAAAAGTTTTAGGGTTAAAATAT
1 AATTTTGGAAAA--TTTAGGGTTAAAATAT
* *
8524163 AATTTTGGAGAAATTTATAGG-TAAAATGT
1 AATTTTGGA-AAATTTA-GGGTTAAAATAT
* *
8524192 AATTTT-TATCAATTTTTAGGGTTAAAATAT
1 AATTTTGGA--AA-ATTTAGGGTTAAAATAT
* * *
8524222 AATTTTAGATAAGTTTGAGGGTTAAAATGT
1 AATTTTGGA-AAATTT-AGGGTTAAAATAT
** *
8524252 AATTTTTAAAAAGTTTTGGGATTAAAATAT
1 AATTTTGGAAAA-TTTAGGG-TTAAAATAT
*
8524282 AATTTT-GAAGAAGTTTTGGGGTTAAAATAT
1 AATTTTGGAA-AA--TTTAGGGTTAAAATAT
*
8524312 TATTTT
1 AATTTT
8524318 TAAATAGTTT
Statistics
Matches: 211, Mismatches: 38, Indels: 44
0.72 0.13 0.15
Matches are distributed among these distances:
28 28 0.13
29 65 0.31
30 108 0.51
31 10 0.05
ACGTcount: A:0.40, C:0.01, G:0.19, T:0.40
Consensus pattern (28 bp):
AATTTTGGAAAATTTAGGGTTAAAATAT
Found at i:8524277 original size:60 final size:59
Alignment explanation
Indices: 8524132--8524327 Score: 229
Period size: 60 Copynumber: 3.3 Consensus size: 59
8524122 GGTAAAAACA
* *
8524132 TAATTTTTAAAAAGTTTTAGGGTTAAAATATAATTTTGGAGAAATTT-ATAGG-TAAAATG
1 TAATTTTTAAAAAGTTTTAGGGTTAAAATATAATTTT-GAGAAGTTTGA-GGGTTAAAATG
** * *
8524191 TAATTTTTATCAATTTTTAGGGTTAAAATATAATTTTAGATAAGTTTGAGGGTTAAAATG
1 TAATTTTTAAAAAGTTTTAGGGTTAAAATATAATTTT-GAGAAGTTTGAGGGTTAAAATG
*
8524251 TAATTTTTAAAAAGTTTT-GGGATTAAAATATAATTTTGAAGAAGTTTTG-GGGTTAAAATA
1 TAATTTTTAAAAAGTTTTAGGG-TTAAAATATAATTTTG-AGAAG-TTTGAGGGTTAAAATG
* *
8524311 TTATTTTTAAATAGTTT
1 TAATTTTTAAAAAGTTT
8524328 AGGAACTTTC
Statistics
Matches: 118, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
59 47 0.40
60 67 0.57
61 4 0.03
ACGTcount: A:0.39, C:0.01, G:0.16, T:0.44
Consensus pattern (59 bp):
TAATTTTTAAAAAGTTTTAGGGTTAAAATATAATTTTGAGAAGTTTGAGGGTTAAAATG
Found at i:8525268 original size:77 final size:71
Alignment explanation
Indices: 8525159--8525325 Score: 221
Period size: 77 Copynumber: 2.3 Consensus size: 71
8525149 ACAAATGTAA
*
8525159 ATCTA-TT-TATATATATATAGATACTCACGTATGTAATAAACAAAAATAATAATAATAATAATA
1 ATCTATTTATATATATATATACATACTCACGTATGTAATAAACAAAAA-AA-AAT-A-AA-AATA
8525222 AAATCAAGACAT
61 AAATCAA-ACAT
*
8525234 ATCTATTTATATATATATATACATACTCATGTATGTAATAAACAAAAAAAAATAAAAATAAAATC
1 ATCTATTTATATATATATATACATACTCACGTATGTAATAAACAAAAAAAAATAAAAATAAAATC
*
8525299 AAATAT
66 AAACAT
* *
8525305 ATATATATATATATATATATA
1 ATCTATTTATATATATATATA
8525326 TATATATATA
Statistics
Matches: 85, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
71 22 0.26
72 11 0.13
73 2 0.02
74 1 0.01
75 8 0.09
76 4 0.05
77 37 0.44
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.34
Consensus pattern (71 bp):
ATCTATTTATATATATATATACATACTCACGTATGTAATAAACAAAAAAAAATAAAAATAAAATC
AAACAT
Found at i:8525308 original size:2 final size:2
Alignment explanation
Indices: 8525301--8525341 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8525291 ATAAAATCAA
8525301 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8525342 AAATAAAATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8526957 original size:49 final size:49
Alignment explanation
Indices: 8526882--8527183 Score: 304
Period size: 49 Copynumber: 6.2 Consensus size: 49
8526872 CGACTCAAAC
* * * *
8526882 CTTTCCCTTCAAATCTTTGTGATACTGGATCCGCCGTCGCGGCTTAGAT
1 CTTTCCCTTCATATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
* *
8526931 CTTTCTCTTCATATCTTCGTGGTACTGGATCCACCGTTGCGGCTTAGAT
1 CTTTCCCTTCATATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
* * * * * * *
8526980 TTTTCCCTT-GTATTTTCGTAGTTCTGGATCCACCGTCGCGGCTTAGAT
1 CTTTCCCTTCATATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
* * *
8527028 CTTTCCCTTCATGTCTTCGTGGTACTAGATCCGTCGTTGCGGCTTAGAT
1 CTTTCCCTTCATATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
* * * * *
8527077 CTTTCCTTTGATGTCTTCGTGGTACTGGATCCGTCGTTGCGACTTAGAT
1 CTTTCCCTTCATATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
* * * * * * * *
8527126 CTTTCCTTTC-TGTCTTCTGAGGTACACGG-TCTGCCATTGCGACTTAGAC
1 CTTTCCCTTCATATCTTC-GTGGTAC-TGGATCCGCCGTTGCGGCTTAGAT
8527175 CTTTCCCTT
1 CTTTCCCTT
8527184 TTGTCTTTTT
Statistics
Matches: 215, Mismatches: 35, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
48 49 0.23
49 164 0.76
50 2 0.01
ACGTcount: A:0.13, C:0.27, G:0.21, T:0.39
Consensus pattern (49 bp):
CTTTCCCTTCATATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
Found at i:8527021 original size:97 final size:98
Alignment explanation
Indices: 8526904--8527131 Score: 316
Period size: 97 Copynumber: 2.3 Consensus size: 98
8526894 ATCTTTGTGA
* *
8526904 TACTGGATCCGCCGTCGCGGCTTAGATCTTTCTCTTCATATCTTCGTGGTACTGGATCCACCGTT
1 TACTGGATCCGCCGTCGCGGCTTAGATCTTTCCCTTCATATCTTCGTGGTACTAGATCCACCGTT
*
8526969 GCGGCTTAGATTTTTCCCTTGTAT-T-TTCGTAG
66 GCGGCTTAGATCTTTCCCTTG-ATGTCTTCGTAG
* * * **
8527001 TTCTGGATCCACCGTCGCGGCTTAGATCTTTCCCTTCATGTCTTCGTGGTACTAGATCCGTCGTT
1 TACTGGATCCGCCGTCGCGGCTTAGATCTTTCCCTTCATATCTTCGTGGTACTAGATCCACCGTT
* *
8527066 GCGGCTTAGATCTTTCCTTTGATGTCTTCGTGG
66 GCGGCTTAGATCTTTCCCTTGATGTCTTCGTAG
* * *
8527099 TACTGGATCCGTCGTTGCGACTTAGATCTTTCC
1 TACTGGATCCGCCGTCGCGGCTTAGATCTTTCC
8527132 TTTCTGTCTT
Statistics
Matches: 114, Mismatches: 15, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
96 2 0.02
97 78 0.68
98 34 0.30
ACGTcount: A:0.13, C:0.26, G:0.22, T:0.39
Consensus pattern (98 bp):
TACTGGATCCGCCGTCGCGGCTTAGATCTTTCCCTTCATATCTTCGTGGTACTAGATCCACCGTT
GCGGCTTAGATCTTTCCCTTGATGTCTTCGTAG
Found at i:8527166 original size:98 final size:97
Alignment explanation
Indices: 8526904--8527239 Score: 291
Period size: 97 Copynumber: 3.4 Consensus size: 97
8526894 ATCTTTGTGA
* * * * * * * *
8526904 TACTGGATCCGCCGTCGCGGCTTAGATCTTTCTCTTCATATCTTCGTGGTACTGGATCCACCGTT
1 TACTGGATCCACCGTCGCGACTTAGATCTTTCCCTTCATGTCTTCGAGGTACTAGATCCGCCATT
*
8526969 GCGGCTTAGATTTTTCCCTTGTATTTTCGTAG
66 GCGGCTTAGATCTTTCCCTTGTATTTTCGTAG
* * * * *
8527001 TTCTGGATCCACCGTCGCGGCTTAGATCTTTCCCTTCATGTCTTCGTGGTACTAGATCCGTCGTT
1 TACTGGATCCACCGTCGCGACTTAGATCTTTCCCTTCATGTCTTCGAGGTACTAGATCCGCCATT
* *
8527066 GCGGCTTAGATCTTTCCTTTG-ATGTCTTCGTGG
66 GCGGCTTAGATCTTTCCCTTGTAT-T-TTCGTAG
** * * * *
8527099 TACTGGATCCGTCGTTGCGACTTAGATCTTTCCTTTC-TGTCTTCTGAGGTAC-ACGGTCTGCCA
1 TACTGGATCCACCGTCGCGACTTAGATCTTTCCCTTCATGTCTTC-GAGGTACTA-GATCCGCCA
* * * * **
8527162 TTGCGACTTAGACCTTTCCCTTTTGTCTTTTTGCGG
64 TTGCGGCTTAGATCTTTCCC--TTGTATTTTCGTAG
* * * * *
8527198 TACTGAATCCACCGTTGTAGTCTTAGATCTTTCCCGTCATGT
1 TACTGGATCCACCGTCG-CGACTTAGATCTTTCCCTTCATGT
8527240 TTCATGGTGC
Statistics
Matches: 196, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
96 2 0.01
97 86 0.44
98 65 0.33
99 19 0.10
100 20 0.10
101 4 0.02
ACGTcount: A:0.13, C:0.26, G:0.21, T:0.39
Consensus pattern (97 bp):
TACTGGATCCACCGTCGCGACTTAGATCTTTCCCTTCATGTCTTCGAGGTACTAGATCCGCCATT
GCGGCTTAGATCTTTCCCTTGTATTTTCGTAG
Found at i:8527190 original size:146 final size:146
Alignment explanation
Indices: 8526854--8527183 Score: 342
Period size: 146 Copynumber: 2.3 Consensus size: 146
8526844 TGTTTCTAAG
* * * * ** * *
8526854 GTACCGGGTTCGCCATTGCGACTCAAACCTTTCCCTTCAAATCTTTGTGATACTGGATCCGCCGT
1 GTACCGGATCCGCCATTGCGACTTAGACCTTTCCCTTCATGTCTTCGTGATACTAGATCCGCCGT
* *
8526919 CGCGGCTTAGATCTTTCTCTTCATATCTTCGTGGTACTGGATCCACCGTTGCGGCTTAGATTTTT
66 CGCGGCTTAGATCTTTCTCTTCATATCTTCGTGGTACTGGATCCACCGTTGCGACTTAGATCTTT
* *
8526984 CCCTTGTATTTTCGTA
131 CCCTTCTATCTTCGTA
* * * * * * * * *
8527000 GTTCTGGATCCACCGTCGCGGCTTAGATCTTTCCCTTCATGTCTTCGTGGTACTAGATCCGTCGT
1 GTACCGGATCCGCCATTGCGACTTAGACCTTTCCCTTCATGTCTTCGTGATACTAGATCCGCCGT
* * * **
8527065 TGCGGCTTAGATCTTTC-CTTTGATGTCTTCGTGGTACTGGATCCGTCGTTGCGACTTAGATCTT
66 CGCGGCTTAGATCTTTCTC-TTCATATCTTCGTGGTACTGGATCCACCGTTGCGACTTAGATCTT
* *
8527129 TCCTTTCTGTCTTC-TGA
130 TCCCTTCTATCTTCGT-A
*
8527146 GGTACACGG-TCTGCCATTGCGACTTAGACCTTTCCCTT
1 -GTAC-CGGATCCGCCATTGCGACTTAGACCTTTCCCTT
8527184 TTGTCTTTTT
Statistics
Matches: 144, Mismatches: 36, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
145 2 0.01
146 114 0.79
147 26 0.18
148 2 0.01
ACGTcount: A:0.14, C:0.27, G:0.21, T:0.38
Consensus pattern (146 bp):
GTACCGGATCCGCCATTGCGACTTAGACCTTTCCCTTCATGTCTTCGTGATACTAGATCCGCCGT
CGCGGCTTAGATCTTTCTCTTCATATCTTCGTGGTACTGGATCCACCGTTGCGACTTAGATCTTT
CCCTTCTATCTTCGTA
Found at i:8533148 original size:29 final size:29
Alignment explanation
Indices: 8533117--8533276 Score: 123
Period size: 29 Copynumber: 5.4 Consensus size: 29
8533107 ACCCGAGGGC
**
8533117 AAAATGGTAATTTTGGTGGAATT-GGGGTCA
1 AAAATGG-AATTTTGG-AAAATTAGGGGTCA
* ** *
8533147 AAAATGGAATTTCGAGAAGTTTAAGGGT--
1 AAAATGGAATTTTG-GAAAATTAGGGGTCA
* * *
8533175 AAAATGGTAATTTTTGGTGAAA-TCGAGGTCA
1 AAAATGG-AA-TTTTGG-AAAATTAGGGGTCA
*
8533206 AAAATGGAATTTTGGAAAATTCGGGGTCA
1 AAAATGGAATTTTGGAAAATTAGGGGTCA
8533235 AAAATGGAATTTTGGAAAACTTAGGGGT-A
1 AAAATGGAATTTTGGAAAA-TTAGGGGTCA
*
8533264 AAAATGTAATTTT
1 AAAATGGAATTTT
8533277 TAGAATTTTT
Statistics
Matches: 104, Mismatches: 17, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
28 10 0.10
29 61 0.59
30 26 0.25
31 7 0.07
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (29 bp):
AAAATGGAATTTTGGAAAATTAGGGGTCA
Found at i:8533247 original size:59 final size:59
Alignment explanation
Indices: 8533112--8533226 Score: 153
Period size: 59 Copynumber: 2.0 Consensus size: 59
8533102 TGGATACCCG
* * * * **
8533112 AGGGCAAAATGGTAA-TTTTGGTGGAATTGGGGTCAAAAATGGAATTTCGAGAAGTTTA
1 AGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTCAAAAATGGAATTTCGAGAAAATTA
*
8533170 AGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTCAAAAATGGAATTTTG-GAAAATT
1 AGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTCAAAAATGGAATTTCGAGAAAATT
8533227 CGGGGTCAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
58 19 0.39
59 30 0.61
ACGTcount: A:0.37, C:0.04, G:0.29, T:0.30
Consensus pattern (59 bp):
AGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTCAAAAATGGAATTTCGAGAAAATTA
Found at i:8533335 original size:30 final size:29
Alignment explanation
Indices: 8533292--8533468 Score: 124
Period size: 30 Copynumber: 5.9 Consensus size: 29
8533282 TTTTTTTGGA
*
8533292 GTTAAAATATAATTTTGGAGAAGTTTAAAG
1 GTTAAAATATAATTTT-GAGAAGTTTAAGG
* * * **
8533322 GTCAAAATGTAATTTTTAGAAAGTTTTGGG
1 GTTAAAATATAATTTTGAG-AAGTTTAAGG
**
8533352 GTTAAAATATAATTTTAGAGAAGTTCGAGG
1 GTTAAAATATAATTTT-GAGAAGTTTAAGG
* * * *
8533382 GTTAAAATGTAATTTTCAAAAAGTTT-TGTG
1 GTTAAAATATAATTTT-GAGAAGTTTAAG-G
**
8533412 GTTAAAATATAATTTTGAAGAAGTTTGGGG
1 GTTAAAATATAATTTTG-AGAAGTTTAAGG
* *
8533442 GTCAAAATACTATTTTTG-GATAGTTTA
1 GTTAAAATA-TAATTTTGAGA-AGTTTA
8533469 GGGACTTCCA
Statistics
Matches: 115, Mismatches: 25, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
29 5 0.04
30 100 0.87
31 10 0.09
ACGTcount: A:0.37, C:0.03, G:0.21, T:0.39
Consensus pattern (29 bp):
GTTAAAATATAATTTTGAGAAGTTTAAGG
Found at i:8533467 original size:60 final size:60
Alignment explanation
Indices: 8533259--8533449 Score: 240
Period size: 60 Copynumber: 3.2 Consensus size: 60
8533249 GAAAACTTAG
* ** * * *
8533259 GGGTAAAAATGTAATTTTTAGAATTTTTTTGGAGTTAAAATATAATTTTGGAGAAGTTTAA
1 GGGTCAAAATGTAATTTTTAGAA-AGTTTTGGGGTTAAAATATAATTTTGAAGAAGTTTGA
* *
8533320 AGGTCAAAATGTAATTTTTAGAAAGTTTTGGGGTTAAAATATAATTTT-AGAGAAGTTCGA
1 GGGTCAAAATGTAATTTTTAGAAAGTTTTGGGGTTAAAATATAATTTTGA-AGAAGTTTGA
* * * * *
8533380 GGGTTAAAATGTAATTTTCAAAAAGTTTTGTGGTTAAAATATAATTTTGAAGAAGTTTGG
1 GGGTCAAAATGTAATTTTTAGAAAGTTTTGGGGTTAAAATATAATTTTGAAGAAGTTTGA
8533440 GGGTCAAAAT
1 GGGTCAAAAT
8533450 ACTATTTTTG
Statistics
Matches: 112, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
60 90 0.80
61 22 0.20
ACGTcount: A:0.38, C:0.02, G:0.21, T:0.39
Consensus pattern (60 bp):
GGGTCAAAATGTAATTTTTAGAAAGTTTTGGGGTTAAAATATAATTTTGAAGAAGTTTGA
Found at i:8534906 original size:33 final size:34
Alignment explanation
Indices: 8534851--8534923 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 34
8534841 TAAACTTAAT
* * * **
8534851 TTTAAGTTTAAAAACCATTTTAAATTTAACTAAA
1 TTTAAATTTAAAAACAAATTTAAATTTAAAAAAA
8534885 TTTAAATTT-AAAACAAATTTAAATTTAAAAAAA
1 TTTAAATTTAAAAACAAATTTAAATTTAAAAAAA
8534918 TTTAAA
1 TTTAAA
8534924 ATCAATTCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 26 0.76
34 8 0.24
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.40
Consensus pattern (34 bp):
TTTAAATTTAAAAACAAATTTAAATTTAAAAAAA
Found at i:8534918 original size:27 final size:27
Alignment explanation
Indices: 8534888--8534944 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
8534878 AACTAAATTT
* *
8534888 AAATTTAAAA-CAAATTTAAATTTAAAA
1 AAATTTAAAATC-AATTCAAAATTAAAA
8534915 AAATTTAAAATCAATTCAAAATTAAAA
1 AAATTTAAAATCAATTCAAAATTAAAA
8534942 AAA
1 AAA
8534945 AAAATCAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (27 bp):
AAATTTAAAATCAATTCAAAATTAAAA
Found at i:8534925 original size:17 final size:16
Alignment explanation
Indices: 8534869--8534923 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
8534859 TAAAAACCAT
**
8534869 TTTAAATTTAACTAAA
1 TTTAAATTTAAAAAAA
8534885 TTTAAATTTAAAACAAA
1 TTTAAATTTAAAA-AAA
8534902 TTTAAATTTAAAAAAA
1 TTTAAATTTAAAAAAA
8534918 TTTAAA
1 TTTAAA
8534924 ATCAATTCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (16 bp):
TTTAAATTTAAAAAAA
Found at i:8535402 original size:12 final size:13
Alignment explanation
Indices: 8535365--8535402 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
8535355 ACTGTAGTGG
*
8535365 TTGATTTGATTAA
1 TTGATTTTATTAA
8535378 TTGATTTTATTAA
1 TTGATTTTATTAA
*
8535391 TT-ATTTTTTTAA
1 TTGATTTTATTAA
8535403 AAGTATTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 9 0.39
13 14 0.61
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (13 bp):
TTGATTTTATTAA
Found at i:8538438 original size:2 final size:2
Alignment explanation
Indices: 8538424--8538459 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
8538414 TAAGGGGAAA
*
8538424 AT AT AT A- AA AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8538460 ATTTAGAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:8538923 original size:19 final size:20
Alignment explanation
Indices: 8538893--8538930 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
8538883 TCATTTTAGT
8538893 AATTTCTTATTAAAAAACCA
1 AATTTCTTATTAAAAAACCA
*
8538913 AATTT-TTATTAATAAACC
1 AATTTCTTATTAAAAAACC
8538931 CCACTCTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTTCTTATTAAAAAACCA
Found at i:8545536 original size:40 final size:40
Alignment explanation
Indices: 8545492--8545595 Score: 154
Period size: 40 Copynumber: 2.6 Consensus size: 40
8545482 ATATTTACTG
8545492 AACTGGTAGTGACACTGTAAACACCGCAAGATTACAACTA
1 AACTGGTAGTGACACTGTAAACACCGCAAGATTACAACTA
* ** *
8545532 AACTGGCAGTGACACTGTAAACATTGCAAGATTACAACTG
1 AACTGGTAGTGACACTGTAAACACCGCAAGATTACAACTA
* *
8545572 AACTGGTAGTGAAATTGTAAACAC
1 AACTGGTAGTGACACTGTAAACAC
8545596 TGTAATGTGT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.22
Consensus pattern (40 bp):
AACTGGTAGTGACACTGTAAACACCGCAAGATTACAACTA
Found at i:8548813 original size:28 final size:28
Alignment explanation
Indices: 8548756--8548817 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 28
8548746 TTGATCTTAT
* * **
8548756 TTGATTTTTTAATAGTACAAGGATTAAA
1 TTGATTTTTTAATAATAAAAAAATTAAA
*
8548784 TTGATTTATTTAATAATAAAAAAATTAAT
1 TTGATTT-TTTAATAATAAAAAAATTAAA
8548813 TTGAT
1 TTGAT
8548818 CTAATTCATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.45
Consensus pattern (28 bp):
TTGATTTTTTAATAATAAAAAAATTAAA
Found at i:8549480 original size:109 final size:108
Alignment explanation
Indices: 8549285--8549490 Score: 252
Period size: 109 Copynumber: 1.9 Consensus size: 108
8549275 TGAATGAGAT
* * * * *
8549285 GTTTAAATAAGATATTCTATTACTTAGGTTCAAGGAAAAATCATACCCAACACGTTAGGATACAA
1 GTTTAAATAAGATACTCAATTACTTAGGTTCAAAGAAAAACCATACCCAACACGTTAGGACACAA
* * * *
8549350 TTTTTCGAGTCCCCTAAAATAACAGAATATTGAACATTTATTG
66 ATTCTCGAGTCCCCTAAAATAAAAGAACATTGAACATTTATTG
* * * *
8549393 GTTTGAAATAGGATACTCAATTATTTAGGTTCAAAGAAAAACCGTACCCAACACGTTAGGGCACA
1 GTTT-AAATAAGATACTCAATTACTTAGGTTCAAAGAAAAACCATACCCAACACGTTAGGACACA
* *
8549458 AATTCTCGCA-TTCTCTAAAATAAAAGAACATTG
65 AATTCTCG-AGTCCCCTAAAATAAAAGAACATTG
8549491 CCTTGATTCT
Statistics
Matches: 81, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
108 4 0.05
109 76 0.94
110 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (108 bp):
GTTTAAATAAGATACTCAATTACTTAGGTTCAAAGAAAAACCATACCCAACACGTTAGGACACAA
ATTCTCGAGTCCCCTAAAATAAAAGAACATTGAACATTTATTG
Found at i:8550482 original size:18 final size:19
Alignment explanation
Indices: 8550434--8550484 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
8550424 TCATGATTTG
*
8550434 TTTTCATT-TTATTTTTATT
1 TTTTCATTATT-TATTTATT
* *
8550453 TTTTCCTCATTTATTTA-T
1 TTTTCATTATTTATTTATT
8550471 TTTTCATTATTTAT
1 TTTTCATTATTTAT
8550485 ACCATTTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 13 0.50
19 11 0.42
20 2 0.08
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTCATTATTTATTTATT
Found at i:8551136 original size:106 final size:108
Alignment explanation
Indices: 8550943--8551144 Score: 248
Period size: 106 Copynumber: 1.9 Consensus size: 108
8550933 AGAATCAAGG
* * * * * *
8550943 CAATATTCTTTTATCTTAAGGAATTCGAGAATTTGTGCCCTAACGTGTTGGGTACGGTTTTTCTT
1 CAATATTCTGTTATCTTAAGGAACTCGAAAAATTGTGCCCTAACG-GTTGGGTACGATTTTTCCT
** * *
8551008 TGAACCTAAATAATTGAGTATCTTATTTAAAACCAAAAAATGCT
65 TGAACCTAAATAATAAAATATCTCATTTAAAACCAAAAAATGCT
* *
8551052 CAATATTCTGTTATTTTAGAGG-ACTCGAAAAATTGTGCCCTAAC-G-TGGGTATGATTTTTCCT
1 CAATATTCTGTTATCTTA-AGGAACTCGAAAAATTGTGCCCTAACGGTTGGGTACGATTTTTCCT
*
8551114 TGAACCTAAGTAATAAAATATCTCATTTAAA
65 TGAACCTAAATAATAAAATATCTCATTTAAA
8551145 CATCTCATTC
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
106 40 0.51
107 1 0.01
109 35 0.44
110 3 0.04
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (108 bp):
CAATATTCTGTTATCTTAAGGAACTCGAAAAATTGTGCCCTAACGGTTGGGTACGATTTTTCCTT
GAACCTAAATAATAAAATATCTCATTTAAAACCAAAAAATGCT
Found at i:8552147 original size:12 final size:12
Alignment explanation
Indices: 8552130--8552170 Score: 66
Period size: 12 Copynumber: 3.4 Consensus size: 12
8552120 ATATTGCTGT
8552130 TTTTGGTTGTTG
1 TTTTGGTTGTTG
8552142 TTTTGGTTGTTG
1 TTTTGGTTGTTG
8552154 TTTTGG-TGTTG
1 TTTTGGTTGTTG
8552165 CTTTTG
1 -TTTTG
8552171 CTGTTATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 5 0.18
12 23 0.82
ACGTcount: A:0.00, C:0.02, G:0.32, T:0.66
Consensus pattern (12 bp):
TTTTGGTTGTTG
Found at i:8552175 original size:23 final size:22
Alignment explanation
Indices: 8552123--8552180 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 22
8552113 AAAAATTATA
8552123 TTGCTG-TTTTTGGTTGTTGTT
1 TTGCTGTTTTTTGGTTGTTGTT
*
8552144 TTGGTTGTTGTTTTGG-TGTTGCTT
1 TT-GCTGTT-TTTTGGTTGTTG-TT
8552168 TTGCTGTTATTTT
1 TTGCTGTT-TTTT
8552181 TGTGGCTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 2 0.07
22 3 0.10
23 15 0.50
24 10 0.33
ACGTcount: A:0.02, C:0.05, G:0.28, T:0.66
Consensus pattern (22 bp):
TTGCTGTTTTTTGGTTGTTGTT
Found at i:8552181 original size:24 final size:24
Alignment explanation
Indices: 8552129--8552182 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
8552119 TATATTGCTG
*
8552129 TTTTTGGTTGTTGTTTTGGTTGTT
1 TTTTTGGTTGTTGTTTTGGCTGTT
*
8552153 GTTTTGG-TGTTGCTTTT-GCTGTT
1 TTTTTGGTTGTTG-TTTTGGCTGTT
8552176 ATTTTTG
1 -TTTTTG
8552183 TGGCTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 10 0.40
24 15 0.60
ACGTcount: A:0.02, C:0.04, G:0.28, T:0.67
Consensus pattern (24 bp):
TTTTTGGTTGTTGTTTTGGCTGTT
Found at i:8552416 original size:48 final size:48
Alignment explanation
Indices: 8552364--8552461 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 48
8552354 ATATAAAGAT
* * *
8552364 TTTTTAA-TGGATTTTAAAT-TTATTTATTTTTTAATGTTTGTTTTAATA
1 TTTTTAAGTGGATTTGAAATATTATATATTTTTTAA-ATTTGTTTT-ATA
* *
8552412 TTTTTAAGTGTATTTGATATATTATATATTTTTTAAATTTGTTTTATA
1 TTTTTAAGTGGATTTGAAATATTATATATTTTTTAAATTTGTTTTATA
8552460 TT
1 TT
8552462 ATAAAATAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
48 12 0.28
49 17 0.40
50 14 0.33
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (48 bp):
TTTTTAAGTGGATTTGAAATATTATATATTTTTTAAATTTGTTTTATA
Found at i:8553597 original size:21 final size:21
Alignment explanation
Indices: 8553552--8553597 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
8553542 ATTATTGAAA
8553552 TAAAACACTATTATCAAGGAAT
1 TAAAACACTATTATCAA-GAAT
*
8553574 TAAAACATCTATTATGAA-AAT
1 TAAAACA-CTATTATCAAGAAT
8553595 TAA
1 TAA
8553598 TTAGTGAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 6 0.27
22 7 0.32
23 9 0.41
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (21 bp):
TAAAACACTATTATCAAGAAT
Found at i:8556409 original size:21 final size:21
Alignment explanation
Indices: 8556371--8556410 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8556361 TTTTAAAATT
*
8556371 TAAAAATTATTTAAAAAATCA
1 TAAAAATTATTAAAAAAATCA
8556392 TAAAAATTA-TAAACAAAAT
1 TAAAAATTATTAAA-AAAAT
8556411 TTATATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (21 bp):
TAAAAATTATTAAAAAAATCA
Found at i:8556566 original size:17 final size:17
Alignment explanation
Indices: 8556541--8556583 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8556531 ATTTTTAGAA
*
8556541 AAATATTTATAGTTTTG
1 AAATTTTTATAGTTTTG
* *
8556558 AAATTTTTATATTTTTT
1 AAATTTTTATAGTTTTG
8556575 AAATATTTT
1 AAAT-TTTT
8556584 TAAATTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (17 bp):
AAATTTTTATAGTTTTG
Found at i:8557188 original size:48 final size:48
Alignment explanation
Indices: 8557135--8557232 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
8557125 GCACGCATGA
8557135 AAACTTGAATAAATTAATCACTACTTTTTTTTTGAATAATCTTATTAT
1 AAACTTGAATAAATTAATCACTACTTTTTTTTTGAATAATCTTATTAT
8557183 AAACTTGAATAAATTAATCACTACTTTTTTTTTGAATAATCTTATTAT
1 AAACTTGAATAAATTAATCACTACTTTTTTTTTGAATAATCTTATTAT
8557231 AA
1 AA
8557233 GTTTTGATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (48 bp):
AAACTTGAATAAATTAATCACTACTTTTTTTTTGAATAATCTTATTAT
Found at i:8563394 original size:48 final size:48
Alignment explanation
Indices: 8563341--8563434 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
8563331 CGTGAAAAAT
* * * **
8563341 TTTCGAGTTTGTTAAGTTGATAAGTCCTATTTTATTGTCCTAACTTAA
1 TTTCGAGTTAGTCAAGTTGACAAGTCCTATTTTATCATCCTAACTTAA
*
8563389 TTTCGAGTTAGTCAAGTTGACAAGTCTTATTTTATCATCCTAACTT
1 TTTCGAGTTAGTCAAGTTGACAAGTCCTATTTTATCATCCTAACTT
8563435 GATGTAAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.46
Consensus pattern (48 bp):
TTTCGAGTTAGTCAAGTTGACAAGTCCTATTTTATCATCCTAACTTAA
Found at i:8565801 original size:21 final size:20
Alignment explanation
Indices: 8565776--8565815 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
8565766 TAATTTGATA
*
8565776 AAATAATAATTGGGAAATAAT
1 AAATAATAATT-AGAAATAAT
8565797 AAATAATAATTAGAAATAA
1 AAATAATAATTAGAAATAA
8565816 GAAAGATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (20 bp):
AAATAATAATTAGAAATAAT
Found at i:8565888 original size:33 final size:32
Alignment explanation
Indices: 8565824--8565892 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 32
8565814 AAGAAAGATA
*
8565824 AATTCTATTAGGATTTGAAAAAGAGTAATTTG
1 AATTCTATTAGAATTTGAAAAAGAGTAATTTG
* * *
8565856 AATTCTAGTTAGAATTTTAAAATGATTAATTTG
1 AATTCTA-TTAGAATTTGAAAAAGAGTAATTTG
8565889 AATT
1 AATT
8565893 TCAAATTAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 7 0.22
33 25 0.78
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.42
Consensus pattern (32 bp):
AATTCTATTAGAATTTGAAAAAGAGTAATTTG
Found at i:8568020 original size:23 final size:23
Alignment explanation
Indices: 8567994--8568092 Score: 94
Period size: 23 Copynumber: 4.2 Consensus size: 23
8567984 GAATACTAGC
8567994 GTGCTCTCCGATTAGCACTGTGT
1 GTGCTCTCCGATTAGCACTGTGT
* * *
8568017 GTGCTCTTCGTTTAGCAC-GTCT
1 GTGCTCTCCGATTAGCACTGTGT
*
8568039 CGTGCTCTCCGTTATTAGCACTTTGT
1 -GTGCTCTCCG--ATTAGCACTGTGT
* *
8568065 GTGCTCTCTGATTA-CTACTTTGT
1 GTGCTCTCCGATTAGC-ACTGTGT
8568088 GTGCT
1 GTGCT
8568093 TAGTACTTTG
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
22 4 0.06
23 41 0.65
25 16 0.25
26 2 0.03
ACGTcount: A:0.11, C:0.25, G:0.22, T:0.41
Consensus pattern (23 bp):
GTGCTCTCCGATTAGCACTGTGT
Found at i:8568112 original size:39 final size:39
Alignment explanation
Indices: 8568053--8568131 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 39
8568043 CTCTCCGTTA
* *
8568053 TTAGCACTTTGTGTGCTCTCTGATTA-CTACTTTGTGTGC
1 TTAGCACTTTGTGTACTCTCTGATTAGC-ACTGTGTGTGC
* *
8568092 TTAGTACTTTGTGTACTCTCTGTTTAGCACTGTGTGTGC
1 TTAGCACTTTGTGTACTCTCTGATTAGCACTGTGTGTGC
8568131 T
1 T
8568132 CTCTGTTGCC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 34 0.97
40 1 0.03
ACGTcount: A:0.13, C:0.19, G:0.22, T:0.47
Consensus pattern (39 bp):
TTAGCACTTTGTGTACTCTCTGATTAGCACTGTGTGTGC
Found at i:8568118 original size:23 final size:23
Alignment explanation
Indices: 8568092--8568138 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8568082 CTTTGTGTGC
* *
8568092 TTAGTACTTTGTGTACTCTCTGT
1 TTAGCACTGTGTGTACTCTCTGT
*
8568115 TTAGCACTGTGTGTGCTCTCTGT
1 TTAGCACTGTGTGTACTCTCTGT
8568138 T
1 T
8568139 GCCCAGCACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.11, C:0.19, G:0.21, T:0.49
Consensus pattern (23 bp):
TTAGCACTGTGTGTACTCTCTGT
Found at i:8577375 original size:23 final size:24
Alignment explanation
Indices: 8577345--8577389 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
8577335 AAAAATTTAT
8577345 AAAATATAATA-CAATAAAAAAAA
1 AAAATATAATAGCAATAAAAAAAA
* *
8577368 AAAATATATTAGTAATAAAAAA
1 AAAATATAATAGCAATAAAAAA
8577390 TAAATTAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (24 bp):
AAAATATAATAGCAATAAAAAAAA
Found at i:8577666 original size:26 final size:25
Alignment explanation
Indices: 8577623--8577685 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 25
8577613 ATTTTTTAGG
* *
8577623 TTTAAATTTATTAAATTT-AAATTCAT
1 TTTAAATTTA-AAAATTTGAAA-TCAA
*
8577649 TTTAAATTTAAAATATTTGAAATGAA
1 TTTAAATTTAAAA-ATTTGAAATCAA
8577675 TTTAAATTTAA
1 TTTAAATTTAA
8577686 TGAAAATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 2 0.06
26 27 0.84
27 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (25 bp):
TTTAAATTTAAAAATTTGAAATCAA
Found at i:8578420 original size:3 final size:3
Alignment explanation
Indices: 8578405--8578451 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
8578395 AACTTTGTTC
* *
8578405 ATA ATA TTA ATA ATA ATA ATA ATA ATTA AT- ATT ATA ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA AT-A ATA ATA
8578451 A
1 A
8578452 AAAATAGAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:8579519 original size:29 final size:31
Alignment explanation
Indices: 8579463--8579525 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 31
8579453 GTTTACAGGT
8579463 CCCTAAACTATTCAAAAATTACCATTTT-AC
1 CCCTAAACTATTCAAAAATTACCATTTTAAC
* *
8579493 CCCTAAA-TATTCCAAAA-TCCCATTTTTAAC
1 CCCTAAACTATTCAAAAATTACCA-TTTTAAC
8579523 CCC
1 CCC
8579526 GATTTCACCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 4 0.14
29 13 0.45
30 12 0.41
ACGTcount: A:0.37, C:0.32, G:0.00, T:0.32
Consensus pattern (31 bp):
CCCTAAACTATTCAAAAATTACCATTTTAAC
Found at i:8579525 original size:30 final size:30
Alignment explanation
Indices: 8579463--8579518 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
8579453 GTTTACAGGT
8579463 CCCTAAACTATTCAAAAATTACCATTTTAC
1 CCCTAAACTATTCAAAAATTACCATTTTAC
* *
8579493 CCCTAAA-TATTCCAAAA-TCCCATTTT
1 CCCTAAACTATTCAAAAATTACCATTTT
8579519 TAACCCCGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
29 9 0.38
30 7 0.29
ACGTcount: A:0.38, C:0.29, G:0.00, T:0.34
Consensus pattern (30 bp):
CCCTAAACTATTCAAAAATTACCATTTTAC
Found at i:8579553 original size:29 final size:29
Alignment explanation
Indices: 8579471--8579553 Score: 68
Period size: 29 Copynumber: 2.9 Consensus size: 29
8579461 GTCCCTAAAC
8579471 TATT-CAAAAATTACCATTTTACCCCTAAA
1 TATTCCAAAAATTACCATTTTACCCC-AAA
* *
8579500 TATTCC-AAAA-TCCCATTTTTAACCCC-GA
1 TATTCCAAAAATTACCA-TTTT-ACCCCAAA
8579528 T-TTCACCAAAAATTACCATTTTACCC
1 TATT--CCAAAAATTACCATTTTACCC
8579554 TTAAATTCTT
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
27 2 0.05
28 6 0.14
29 18 0.41
30 14 0.32
31 4 0.09
ACGTcount: A:0.36, C:0.29, G:0.01, T:0.34
Consensus pattern (29 bp):
TATTCCAAAAATTACCATTTTACCCCAAA
Done.