Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 36 of 135
Found at i:9250959 original size:22 final size:21
Alignment explanation
Indices: 9250924--9250981 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
9250914 CCCAATTATT
9250924 TTTATTT-TTT-TTTTTTTTA
1 TTTATTTATTTATTTTTTTTA
*
9250943 TTT-TTCTATCTTATTTTATTTA
1 TTTATT-TAT-TTATTTTTTTTA
9250965 TTTATTTATTTATTTTT
1 TTTATTTATTTATTTTT
9250982 GTCCAGGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
18 2 0.06
19 4 0.12
20 1 0.03
21 9 0.28
22 14 0.44
23 2 0.06
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTATTTATTTATTTTTTTTA
Found at i:9250966 original size:4 final size:4
Alignment explanation
Indices: 9250924--9250979 Score: 53
Period size: 4 Copynumber: 13.8 Consensus size: 4
9250914 CCCAATTATT
* *
9250924 TTTA TTT- TTTT TTTT TTTA TTT- TTCTA TCTTA TTTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TT-TA T-TTA -TTTA TTTA TTTA TTTA
9250973 TTTA TTT
1 TTTA TTT
9250980 TTGTCCAGGA
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
3 5 0.11
4 33 0.72
5 6 0.13
6 2 0.04
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (4 bp):
TTTA
Found at i:9251780 original size:103 final size:103
Alignment explanation
Indices: 9251670--9251861 Score: 289
Period size: 103 Copynumber: 1.9 Consensus size: 103
9251660 ATGTGTTAGA
* * *
9251670 CTGAGTAACCGGGGTGGAGTGCTTGGTTGTCATTTCACTTT-GCGTCAAAAGGGCTAATGCATTC
1 CTGAGTAACCGGGATGGAGTGCTTGGGTGTCATTTCA-TTTCGCGTCAAAAGGGCCAATGCATTC
9251734 -TAAAAAAAAAAAGAAGAAAAAAATTGAGAGCATGTTGGG
65 TTAAAAAAAAAAA-AAGAAAAAAATTGAGAGCATGTTGGG
* *
9251773 CTGAGTAACCGGGATGGAGTGCTTGGGTGTCATTTCATTTCGCGTCAAAAGGTCCAATGTATTCT
1 CTGAGTAACCGGGATGGAGTGCTTGGGTGTCATTTCATTTCGCGTCAAAAGGGCCAATGCATTCT
* *
9251838 TAAAGAAAAAAAAAGGAAAAAATT
66 TAAAAAAAAAAAAAGAAAAAAATT
9251862 CACAAAATAA
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
102 3 0.04
103 66 0.82
104 11 0.14
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.26
Consensus pattern (103 bp):
CTGAGTAACCGGGATGGAGTGCTTGGGTGTCATTTCATTTCGCGTCAAAAGGGCCAATGCATTCT
TAAAAAAAAAAAAAGAAAAAAATTGAGAGCATGTTGGG
Found at i:9252455 original size:19 final size:19
Alignment explanation
Indices: 9252433--9252477 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
9252423 TTATATTAGA
9252433 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
9252452 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
9252471 ATTTAAT
1 ATTTAAT
9252478 TTATATTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:9252481 original size:24 final size:25
Alignment explanation
Indices: 9252451--9252504 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
9252441 TTTAAGATAT
9252451 TATTTATTATTTA-AATTTGTATTTA
1 TATTTA-TATTTATAATTTGTATTTA
**
9252476 -ATTTATATTTATTTTTTGTATTTA
1 TATTTATATTTATAATTTGTATTTA
9252500 TATTT
1 TATTT
9252505 TAGAGTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 6 0.24
24 15 0.60
25 4 0.16
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.69
Consensus pattern (25 bp):
TATTTATATTTATAATTTGTATTTA
Found at i:9253868 original size:21 final size:21
Alignment explanation
Indices: 9253836--9253875 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
9253826 TCATAAAGCT
9253836 TGTTTATATTTTAATTAATCA
1 TGTTTATATTTTAATTAATCA
9253857 TGTTT-TAGTTTTAATTAAT
1 TGTTTATA-TTTTAATTAAT
9253876 ATTAATGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (21 bp):
TGTTTATATTTTAATTAATCA
Found at i:9260660 original size:85 final size:87
Alignment explanation
Indices: 9260490--9260685 Score: 209
Period size: 85 Copynumber: 2.3 Consensus size: 87
9260480 TAAACTTAAA
** * * * *
9260490 AAAAAAAACAATTAATTCTCTTTTTTTTTGCACTCAATTGAGCACTTGAGCTTTCAAAATGCATA
1 AAAAAAAACAATTAAACCCCTGTTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATACATA
** *
9260555 AAAAAGATTCTCAAACTTTTT-
66 AAAAAGACCCTAAAACTTTTTG
* * * * *
9260576 CAAAAAAGCAATTAAGCCCCTGTTTTTTT-CACTCAATTG-GATACTTGAATTTTCAAAATACAT
1 AAAAAAAACAATTAAACCCCTGTTTTTTTGCACTCAATTGAG-CACTTGAACTTTCAAAATACAT
* *
9260639 CAAAAAGACCCTAAAATTTTTTG
65 AAAAAAGACCCTAAAACTTTTTG
*
9260662 AAAAAAAACAATTAAACCCTTGTT
1 AAAAAAAACAATTAAACCCCTGTT
9260686 CTTACTAAAA
Statistics
Matches: 89, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
84 1 0.01
85 45 0.51
86 43 0.48
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.34
Consensus pattern (87 bp):
AAAAAAAACAATTAAACCCCTGTTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATACATA
AAAAAGACCCTAAAACTTTTTG
Found at i:9260740 original size:19 final size:18
Alignment explanation
Indices: 9260718--9260770 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
9260708 TATAGAAAAT
9260718 AAAAAATAAAAAATTTTA
1 AAAAAATAAAAAATTTTA
* **
9260736 GAAAAATTATTAAATTTTA
1 -AAAAAATAAAAAATTTTA
9260755 ATAAAAATATAAAAAT
1 A-AAAAATA-AAAAAT
9260771 ATATTAAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
18 1 0.04
19 21 0.81
20 4 0.15
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
AAAAAATAAAAAATTTTA
Found at i:9260770 original size:20 final size:19
Alignment explanation
Indices: 9260719--9260770 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
9260709 ATAGAAAATA
9260719 AAAAATA-AAAAATTTTAG
1 AAAAATATAAAAATTTTAG
* *
9260737 AAAAAT-TATTAAATTTTAAT
1 AAAAATATA-AAAATTTT-AG
9260757 AAAAATATAAAAAT
1 AAAAATATAAAAAT
9260771 ATATTAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 7 0.26
19 7 0.26
20 11 0.41
21 2 0.07
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAAATATAAAAATTTTAG
Found at i:9260789 original size:28 final size:28
Alignment explanation
Indices: 9260737--9260799 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 28
9260727 AAAATTTTAG
9260737 AAAAATTATTAAATTTTAATAAAAATAT
1 AAAAATTATTAAATTTTAATAAAAATAT
*
9260765 AAAAATATATTAAATTTTAAT-AAAATTT
1 AAAAAT-TATTAAATTTTAATAAAAATAT
9260793 AAAAATT
1 AAAAATT
9260800 TAAAAATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 18 0.55
29 14 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (28 bp):
AAAAATTATTAAATTTTAATAAAAATAT
Found at i:9260812 original size:18 final size:18
Alignment explanation
Indices: 9260756--9260817 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
9260746 TAAATTTTAA
*
9260756 TAAAAATATAAAAATATAT
1 TAAAAATTTAAAAAT-TAT
* *
9260775 T-AAATTTTAATAAAAT-T
1 TAAAAATTTAA-AAATTAT
9260792 TAAAAATTTAAAAATTAT
1 TAAAAATTTAAAAATTAT
9260810 TAAAAATT
1 TAAAAATT
9260818 AGAAATATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
17 6 0.17
18 25 0.71
19 4 0.11
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAAATTTAAAAATTAT
Found at i:9260812 original size:28 final size:29
Alignment explanation
Indices: 9260737--9260812 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
9260727 AAAATTTTAG
*
9260737 AAAAAT-TATTAAATTTTAATAAAAATAT
1 AAAAATATATAAAATTTTAATAAAAATAT
* *
9260765 AAAAATATATTAAATTTTAAT-AAAATTT
1 AAAAATATATAAAATTTTAATAAAAATAT
*
9260793 AAAAATTTA-AAAATTATTAA
1 AAAAATATATAAAATT-TTAA
9260813 AAATTAGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 5 0.12
28 24 0.56
29 14 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (29 bp):
AAAAATATATAAAATTTTAATAAAAATAT
Found at i:9260818 original size:10 final size:10
Alignment explanation
Indices: 9260737--9260818 Score: 54
Period size: 10 Copynumber: 8.8 Consensus size: 10
9260727 AAAATTTTAG
9260737 AAAAATTATT
1 AAAAATTATT
** *
9260747 AAATTTTAAT
1 AAAAATTATT
9260757 AAAAA-TA-T
1 AAAAATTATT
9260765 AAAAATATATT
1 AAAAAT-TATT
9260776 --AAATT-TT
1 AAAAATTATT
*
9260783 AATAAAAT-TT
1 AA-AAATTATT
9260793 AAAAA-T-TT
1 AAAAATTATT
9260801 AAAAATTATT
1 AAAAATTATT
9260811 AAAAATTA
1 AAAAATTA
9260819 GAAATATTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
7 2 0.03
8 15 0.26
9 10 0.17
10 30 0.52
11 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
AAAAATTATT
Found at i:9261159 original size:8 final size:8
Alignment explanation
Indices: 9261146--9261193 Score: 60
Period size: 8 Copynumber: 5.8 Consensus size: 8
9261136 GACTGTATAA
9261146 ATTTTTAT
1 ATTTTTAT
9261154 ATTTTTAT
1 ATTTTTAT
9261162 ATATTTTAT
1 AT-TTTTAT
*
9261171 ATTTTTTAC
1 A-TTTTTAT
*
9261180 AATTTTAT
1 ATTTTTAT
9261188 ATTTTT
1 ATTTTT
9261194 TTCTAATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
8 20 0.59
9 13 0.38
10 1 0.03
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (8 bp):
ATTTTTAT
Found at i:9261162 original size:18 final size:17
Alignment explanation
Indices: 9261141--9261260 Score: 75
Period size: 18 Copynumber: 6.7 Consensus size: 17
9261131 CTTATGACTG
9261141 TATAAATTTTTATATTTT
1 TATAAA-TTTTATATTTT
*
9261159 TATATATTTTATATTTT
1 TATAAATTTTATATTTT
9261176 T-TACAATTTTATATTTTTT
1 TATA-AATTTTATA--TTTT
* *
9261195 TCTAATTTTTAATATTTT
1 TATAAATTTT-ATATTTT
*
9261213 T-TAATATTTGA-ATTTT
1 TATAA-ATTTTATATTTT
* *
9261229 TATTAAAATTTAATAATATT
1 TA-T-AAATTTTAT-ATTTT
*
9261249 TATAACTTTTAT
1 TATAAATTTTAT
9261261 TGATTTTAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
16 8 0.10
17 24 0.29
18 26 0.32
19 13 0.16
20 11 0.13
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (17 bp):
TATAAATTTTATATTTT
Found at i:9261170 original size:17 final size:17
Alignment explanation
Indices: 9261148--9261215 Score: 75
Period size: 17 Copynumber: 3.8 Consensus size: 17
9261138 CTGTATAAAT
*
9261148 TTTTATATTTTTATA-TA
1 TTTTATATTTTT-TACAA
9261165 TTTTATATTTTTTACAA
1 TTTTATATTTTTTACAA
*
9261182 TTTTATATTTTTTTCTAA
1 TTTTATATTTTTTAC-AA
9261200 TTTTTAATATTTTTTA
1 -TTTT-ATATTTTTTA
9261216 ATATTTGAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
16 2 0.05
17 27 0.61
18 2 0.05
19 4 0.09
20 9 0.20
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTATATTTTTTACAA
Found at i:9261214 original size:10 final size:9
Alignment explanation
Indices: 9261147--9261221 Score: 64
Period size: 9 Copynumber: 8.2 Consensus size: 9
9261137 ACTGTATAAA
9261147 TTTTTATA-
1 TTTTTATAT
9261155 TTTTTATAT
1 TTTTTATAT
*
9261164 ATTTTATAT
1 TTTTTATAT
*
9261173 TTTTTACA-
1 TTTTTATAT
*
9261181 ATTTTATATT
1 TTTTTATA-T
*
9261191 TTTTTCTAAT
1 TTTTTAT-AT
*
9261201 TTTTAATAT
1 TTTTTATAT
9261210 TTTTTAATAT
1 TTTTT-ATAT
9261220 TT
1 TT
9261222 GAATTTTTAT
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
8 14 0.27
9 20 0.38
10 17 0.33
11 1 0.02
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTATAT
Found at i:9261217 original size:17 final size:17
Alignment explanation
Indices: 9261145--9261284 Score: 67
Period size: 17 Copynumber: 8.0 Consensus size: 17
9261135 TGACTGTATA
9261145 AATTTTT-ATA-TTTTT
1 AATTTTTAATATTTTTT
9261160 ATATATTTT-ATATTTTTT
1 A-AT-TTTTAATATTTTTT
* *
9261178 ACAATTTTATATTTTTTTCT
1 A-ATTTTTA-ATATTTTT-T
9261198 AATTTTTAATATTTTTT
1 AATTTTTAATATTTTTT
*
9261215 AATATTTGAAT-TTTTATT
1 AAT-TTTTAATATTTT-TT
** *
9261233 AAAATTTAATAATATTTAT
1 AATTTTTAAT-AT-TTTTT
* *
9261252 AACTTTT-AT-TGATTTT
1 AATTTTTAATAT-TTTTT
*
9261268 AATTTTTTATATTTTTT
1 AATTTTTAATATTTTTT
9261285 TAAGTAATGA
Statistics
Matches: 95, Mismatches: 17, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
15 1 0.01
16 12 0.13
17 30 0.32
18 27 0.28
19 20 0.21
20 5 0.05
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (17 bp):
AATTTTTAATATTTTTT
Found at i:9261354 original size:22 final size:22
Alignment explanation
Indices: 9261304--9261354 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
9261294 ATTTAATTAT
9261304 TTTTTTTGAAAAATTTTAAGAG
1 TTTTTTTGAAAAATTTTAAGAG
** *
9261326 TAATTTTGAAAAGA-TTTGAGAG
1 TTTTTTTGAAAA-ATTTTAAGAG
9261348 TTTTTTT
1 TTTTTTT
9261355 TATACATCTT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (22 bp):
TTTTTTTGAAAAATTTTAAGAG
Found at i:9267081 original size:89 final size:89
Alignment explanation
Indices: 9266921--9267105 Score: 300
Period size: 89 Copynumber: 2.1 Consensus size: 89
9266911 AAATACACAC
* * *
9266921 AATTAACGGTTGGTAACAAATATTTTGACAAAATCTGAGAAAGATTGATTAATGGAACCGGAAGA
1 AATT-ACGGTTGGTAACAAATACTTTGACAAAATCTAAGAAAGATTGATTAATGGAACCGAAAGA
9266986 TCAATGTCGGATATTTGTACAACGG
65 TCAATGTCGGATATTTGTACAACGG
*
9267011 AATTACGGTTGGTAACAAATACTTTGACAAGATCTAAGAAAGATT-AGTTAATGGAACCGAAAGA
1 AATTACGGTTGGTAACAAATACTTTGACAAAATCTAAGAAAGATTGA-TTAATGGAACCGAAAGA
*
9267075 TTAATGTCGGATATTTGTACAACGG
65 TCAATGTCGGATATTTGTACAACGG
9267100 AATTAC
1 AATTAC
9267106 AAAATCTAGT
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
88 1 0.01
89 84 0.94
90 4 0.04
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.28
Consensus pattern (89 bp):
AATTACGGTTGGTAACAAATACTTTGACAAAATCTAAGAAAGATTGATTAATGGAACCGAAAGAT
CAATGTCGGATATTTGTACAACGG
Found at i:9272591 original size:21 final size:21
Alignment explanation
Indices: 9272567--9272616 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
9272557 CGAGATGATT
*
9272567 CTACCGATAC-ATGTGACACAA
1 CTACCGATACAAT-TCACACAA
* *
9272588 CTACCGAAACAATTCATACAA
1 CTACCGATACAATTCACACAA
9272609 CTACCGAT
1 CTACCGAT
9272617 GCCAAAAACT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.40, C:0.30, G:0.10, T:0.20
Consensus pattern (21 bp):
CTACCGATACAATTCACACAA
Found at i:9273385 original size:52 final size:52
Alignment explanation
Indices: 9273328--9273558 Score: 383
Period size: 52 Copynumber: 4.4 Consensus size: 52
9273318 ATTTCATTTC
* * * *
9273328 ATTCATATACTCACGATGAAACATAGCCACCGGACCTCATAATCCATAAAGA
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
9273380 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
*
9273432 ATTCATATACTCACTATGACACATAGCCATCGGACCTCATAA-CCTGTAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCC-GTAAAGG
*
9273484 ATTTATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
*
9273536 ATTCATATACTCATGATGACACA
1 ATTCATATACTCACGATGACACA
9273559 GTCATCAGAC
Statistics
Matches: 168, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
51 2 0.01
52 164 0.98
53 2 0.01
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.24
Consensus pattern (52 bp):
ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
Found at i:9278908 original size:1 final size:1
Alignment explanation
Indices: 9278899--9278987 Score: 70
Period size: 1 Copynumber: 89.0 Consensus size: 1
9278889 AAAAAAGGGC
* * * * * * * *
9278899 AAAAGAAAAAAAAAAGAAAAAAGAAGAAAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
9278964 AAAGAAAAAGAAAAGAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAA
9278988 GGAGAGGTCG
Statistics
Matches: 64, Mismatches: 24, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 64 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (1 bp):
A
Found at i:9278917 original size:26 final size:24
Alignment explanation
Indices: 9278872--9278987 Score: 101
Period size: 26 Copynumber: 4.6 Consensus size: 24
9278862 AAATAAATAA
*
9278872 AAAAGAAAGAAAACAAGAAAAAAGGG
1 AAAAGAAA-AAAAAAAGAAAAAA-GG
9278898 CAAAAGAAAAAAAAAAGAAAAAAGAAG
1 -AAAAGAAAAAAAAAAGAAAAAAG--G
*
9278925 AAAA-AAAAAGAAAAAG-AAAAAGA
1 AAAAGAAAAA-AAAAAGAAAAAAGG
* *
9278948 AAAAGAAAAAAAAAAAAAAGAAAAAG
1 AAAAG-AAAAAAAAAAGAA-AAAAGG
*
9278974 AAAAGAAAAGAAAA
1 AAAAGAAAAAAAAA
9278988 GGAGAGGTCG
Statistics
Matches: 76, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
23 4 0.05
24 5 0.07
25 26 0.34
26 32 0.42
27 9 0.12
ACGTcount: A:0.83, C:0.02, G:0.16, T:0.00
Consensus pattern (24 bp):
AAAAGAAAAAAAAAAGAAAAAAGG
Found at i:9278931 original size:38 final size:35
Alignment explanation
Indices: 9278900--9278987 Score: 113
Period size: 38 Copynumber: 2.4 Consensus size: 35
9278890 AAAAAGGGCA
9278900 AAAGAAAAAAAAAAGAAAAAAGAAGAAAAAAAAAGAA
1 AAAGAAAAAAAAAAGAAAAAA-AA-AAAAAAAAAGAA
*
9278937 AAAGAAAAAGAAAAAGAAAAAAAAAAAAAAGAAAAAGA
1 AAAGAAAAA-AAAAAGAAAAAAAAAAAAAA-AAAGA-A
*
9278975 AAAGAAAAGAAAA
1 AAAGAAAAAAAAA
9278988 GGAGAGGTCG
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
36 6 0.13
37 19 0.41
38 21 0.46
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (35 bp):
AAAGAAAAAAAAAAGAAAAAAAAAAAAAAAAAGAA
Found at i:9280015 original size:50 final size:50
Alignment explanation
Indices: 9279929--9280100 Score: 140
Period size: 50 Copynumber: 3.5 Consensus size: 50
9279919 GAAAAAACTT
* * * * *
9279929 GAAGATTTGAAGGGAAAGG-TTGCGGCCGCAACGGTGAACCCGATACCTTA
1 GAAGATGTGATGGG-AAGGATTGAGGTCGCAACGGTGAACTCGATACCTTA
* * ** * *
9279979 GAAGATGTGATGGGAAGGATTGAGGTTGCAATGGTGAA-TTTAGTATCAT-
1 GAAGATGTGATGGGAAGGATTGAGGTCGCAACGGTGAACTCGA-TACCTTA
* *
9280028 GAA-ATGTGATGGGAAAGG-TTGAGGTCGCAACGATGAACTCGGTACCTTA
1 GAAGATGTGATGGG-AAGGATTGAGGTCGCAACGGTGAACTCGATACCTTA
*
9280077 GAAGATGTGATAAGG-AGGATTGAG
1 GAAGATGTGAT-GGGAAGGATTGAG
9280101 ACCGCAATGG
Statistics
Matches: 94, Mismatches: 20, Indels: 16
0.72 0.15 0.12
Matches are distributed among these distances:
48 30 0.32
49 19 0.20
50 43 0.46
51 2 0.02
ACGTcount: A:0.31, C:0.11, G:0.34, T:0.23
Consensus pattern (50 bp):
GAAGATGTGATGGGAAGGATTGAGGTCGCAACGGTGAACTCGATACCTTA
Found at i:9280109 original size:98 final size:98
Alignment explanation
Indices: 9279940--9280167 Score: 298
Period size: 98 Copynumber: 2.3 Consensus size: 98
9279930 AAGATTTGAA
* * **
9279940 GGGAAAGGTTGCGGCCGCAACGGTGAACCCGATACCTTAGAAGATGTGATGGGAAGGATTGAGGT
1 GGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTAGAAGATGTGATAGGAAGGATTGAGAC
* ** *
9280005 TGCAATGGTGAATTTAGTAT-CATGAAATGTGAT
66 CGCAATGGCAAATCTAGT-TCCATGAAATGTGAT
* * * *
9280038 GGGAAAGGTTGAGGTCGCAACGATGAACTCGGTACCTTAGAAGATGTGATAAGG-AGGATTGAGA
1 GGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTAGAAGATGTGAT-AGGAAGGATTGAGA
*
9280102 CCGCAATGGCAAATCTGGTTCCATGAAATGTGAT
65 CCGCAATGGCAAATCTAGTTCCATGAAATGTGAT
*
9280136 GGGAAAGGTTGAGGCCACAACGGTGAACCCGA
1 GGGAAAGGTTGAGGCCGCAACGGTGAACCCGA
9280168 CACCATGAAG
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
97 1 0.01
98 107 0.97
99 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.21
Consensus pattern (98 bp):
GGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTAGAAGATGTGATAGGAAGGATTGAGAC
CGCAATGGCAAATCTAGTTCCATGAAATGTGAT
Found at i:9280536 original size:41 final size:41
Alignment explanation
Indices: 9280452--9280581 Score: 190
Period size: 41 Copynumber: 3.2 Consensus size: 41
9280442 ATTAAAACTA
* * * *
9280452 CAGATTAAAGATTCCAGTCTTTTA-TCTTAATCAAGTGGGG
1 CAGATTGAAGATTCCAGTCTTTTACCCCTAATCAAGAGGGG
9280492 CAGATTGAAGATTCCAGTCTTTTACCCCTAATCAAGAGGGG
1 CAGATTGAAGATTCCAGTCTTTTACCCCTAATCAAGAGGGG
* * *
9280533 CAGATTGAAGATTCTAATCTTTTACCCCTAATCAAGAAGGG
1 CAGATTGAAGATTCCAGTCTTTTACCCCTAATCAAGAGGGG
9280574 CAGATTGA
1 CAGATTGA
9280582 GGACACATCA
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 23 0.28
41 59 0.72
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (41 bp):
CAGATTGAAGATTCCAGTCTTTTACCCCTAATCAAGAGGGG
Found at i:9281035 original size:87 final size:84
Alignment explanation
Indices: 9280881--9281047 Score: 219
Period size: 87 Copynumber: 2.0 Consensus size: 84
9280871 TCAAACCTCA
* * ** * *
9280881 TCTTCCTGATGAGATACAGAGAAGTGGGTCGAACCAATAAGTGGTCATCTTCCTGACGAGATGTA
1 TCTTCCTGATGAGATACAGAAAAGTGGATCGAAAAAATAAGCGGTCATCTTCCTGACGAGATATA
9280946 GAGAAGT-GAACCAAAACCG
66 GAGAAGTAG-ACCAAAACCG
* *
9280965 TCTTCCTGATGAGATACAGAAAAGTTGGATTGAAAAAAGTAATGCGGTCATCTTCCTGATGAGAT
1 TCTTCCTGATGAGATACAGAAAAG-TGGATCGAAAAAA-TAA-GCGGTCATCTTCCTGACGAGAT
9281030 ATAGAGAAGTAGACCAAA
63 ATAGAGAAGTAGACCAAA
9281048 TCGATGAAAC
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
84 23 0.32
85 9 0.13
86 3 0.04
87 35 0.49
88 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (84 bp):
TCTTCCTGATGAGATACAGAAAAGTGGATCGAAAAAATAAGCGGTCATCTTCCTGACGAGATATA
GAGAAGTAGACCAAAACCG
Found at i:9281228 original size:210 final size:206
Alignment explanation
Indices: 9280716--9281369 Score: 794
Period size: 210 Copynumber: 3.1 Consensus size: 206
9280706 GTAATAAAGC
* * * *
9280716 GGTCGTCTTTCTAATGAGATACAGAGAAGTGGACCAAATCTGTCTTTCTGCTGAGATACAAAGAA
1 GGTCATCTTCCTAATGAGATATAGAGAAGTGGACCAAATCTGTCTTTCTGATGAGATACAAAGAA
** * *
9280781 GTGAATT-AAATCCATAAGGCGGTCATCTTCTTGATGAGATACAGAGAAGTAGACTAGATCATTG
66 GTGAATTAAAATAGATAA-GCGGTCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCA-TG
* * * *
9280845 AAGCGCAGCTCAATGTGAGTAAAAATTCAAACCTCATCTTCCTGATGAGATACAGAGAAGTGGGT
129 AAGCGAAGCTCAATGTGAGTGAAACTTCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGT
*
9280910 CGAACCAATAAGT
194 CAAACCAATAAGT
* * * * * * *
9280923 GGTCATCTTCCTGACGAGATGTAGAGAAGTGAACCAAAACCGTCTTCCTGATGAGATACAGAA-A
1 GGTCATCTTCCTAATGAGATATAGAGAAGTGGACCAAATCTGTCTTTCTGATGAGATACA-AAGA
* * * *
9280987 AGTTGGATTGAAAAAAG-TAATGCGGTCATCTTCCTGATGAGATATAGAGAAGTAGACCAAATCG
65 AG-TGAATT-AAAATAGATAA-GCGGTCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATC-
* * *
9281051 ATGAAACGAAGCTCATTGTGAGTGAAACTCCAAACCCCCATCTTCCTGATGAGATACAGAGAAGT
126 ATGAAGCGAAGCTCAATGTGAGTGAAACTTCAAA-CCCCATCTTCCTGATGAGATACAGAGAAGT
*
9281116 GGGTCAAAGCAATAAAGT
190 GGGTCAAACCAAT-AAGT
* * *
9281134 GTTCATCTTCTTAATGAGATATAGAAAAGTGGACCAAATCTGTCTTTCTGATGAGATACAAAGAA
1 GGTCATCTTCCTAATGAGATATAGAGAAGTGGACCAAATCTGTCTTTCTGATGAGATACAAAGAA
* *
9281199 GTGAATTAAAATAGATGAGACAGTCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCAATG
66 GTGAATTAAAATAGATAAG-CGGTCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATC-ATG
* * *
9281264 AAGCAAAGCTCAATGTGAGTGAAACTTCAAA-CCCGTCTTCCTGATGAGATACAGAGAAGTGGAT
129 AAGCGAAGCTCAATGTGAGTGAAACTTCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGT
* * * *
9281328 TAAAACAGATGAGGC
194 CAAACCA-AT-AAGT
*
9281343 GGTCATCTTCCTAATGAGATACAGAGA
1 GGTCATCTTCCTAATGAGATATAGAGA
9281370 TGTAGCCCAA
Statistics
Matches: 375, Mismatches: 61, Indels: 20
0.82 0.13 0.04
Matches are distributed among these distances:
207 52 0.14
208 43 0.11
209 102 0.27
210 121 0.32
211 57 0.15
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (206 bp):
GGTCATCTTCCTAATGAGATATAGAGAAGTGGACCAAATCTGTCTTTCTGATGAGATACAAAGAA
GTGAATTAAAATAGATAAGCGGTCATCTTCTTGATGAGATACAGAGAAGTAGACCAAATCATGAA
GCGAAGCTCAATGTGAGTGAAACTTCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCA
AACCAATAAGT
Found at i:9281394 original size:123 final size:125
Alignment explanation
Indices: 9281172--9281495 Score: 429
Period size: 123 Copynumber: 2.6 Consensus size: 125
9281162 GTGGACCAAA
* * * * * *
9281172 TCTGTCTTTCTGATGAGATACAAAGAAGTGAATTAAAATAGATGAGACAGTCATCTTCTTGATGA
1 TCTGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAGATGAGACAGTCATCTTCCTAATGA
9281237 GATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAACC
66 GATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAACC
* *
9281297 -C-GTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAGATGAGGCGGTCATCTTCCTAATGA
1 TCTGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAGATGAGACAGTCATCTTCCTAATGA
* * * * *
9281360 GATACAGAGATGTAGCCCAAATCAATGAAGCAAAGTTCAATGTGAGTGAAGCTTTAAACC
66 GATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAACC
* * * ** * * * *
9281420 TCTATCTTCCTGATGAGATATAGAGAAGTGGGTCGAAGCA-ATGAAACAGTCATCTTCCTGATAA
1 TCTGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAGATGAGACAGTCATCTTCCTAATGA
9281484 GATACAGAGAAG
66 GATACAGAGAAG
9281496 AAGATCAAGA
Statistics
Matches: 172, Mismatches: 25, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
123 109 0.63
124 32 0.19
125 31 0.18
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.24
Consensus pattern (125 bp):
TCTGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAGATGAGACAGTCATCTTCCTAATGA
GATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAACC
Found at i:9288774 original size:24 final size:24
Alignment explanation
Indices: 9288733--9288893 Score: 171
Period size: 24 Copynumber: 6.7 Consensus size: 24
9288723 GTTCAGTACA
** *
9288733 TTTACGCTCATCAACTAATATACG
1 TTTACGCTCGCCAGCTAATATACG
* *
9288757 TTTACGCTTGCCAGCTAATATAGG
1 TTTACGCTCGCCAGCTAATATACG
* *
9288781 TTTACACTCGTCAGCTAATATGA-G
1 TTTACGCTCGCCAGCTAATAT-ACG
* *
9288805 TTTACGCTCGCCAGCTGATATTCG
1 TTTACGCTCGCCAGCTAATATACG
9288829 TTTACGCTCGCCAGCTAATATACG
1 TTTACGCTCGCCAGCTAATATACG
** * * *
9288853 TTTACGCTCATCAACTAATATGCA
1 TTTACGCTCGCCAGCTAATATACG
*
9288877 TTTACGCTCACCAGCTA
1 TTTACGCTCGCCAGCTA
9288894 TTCAGATAAA
Statistics
Matches: 114, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
24 113 0.99
25 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (24 bp):
TTTACGCTCGCCAGCTAATATACG
Found at i:9288850 original size:72 final size:72
Alignment explanation
Indices: 9288731--9288892 Score: 218
Period size: 72 Copynumber: 2.2 Consensus size: 72
9288721 AAGTTCAGTA
* * * * * * *
9288731 CATTTACGCTCATCAACTAATATACGTTTACGCTTGCCAGCTAATATAGGTTTACACTCGTCAGC
1 CATTTACGCTCACCAGCTGATATACGTTTACGCTCGCCAGCTAATATACGTTTACACTCATCAAC
9288796 TAATATG
66 TAATATG
* * *
9288803 -AGTTTACGCTCGCCAGCTGATATTCGTTTACGCTCGCCAGCTAATATACGTTTACGCTCATCAA
1 CA-TTTACGCTCACCAGCTGATATACGTTTACGCTCGCCAGCTAATATACGTTTACACTCATCAA
9288867 CTAATATG
65 CTAATATG
9288875 CATTTACGCTCACCAGCT
1 CATTTACGCTCACCAGCT
9288893 ATTCAGATAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
71 1 0.01
72 75 0.97
73 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (72 bp):
CATTTACGCTCACCAGCTGATATACGTTTACGCTCGCCAGCTAATATACGTTTACACTCATCAAC
TAATATG
Found at i:9292058 original size:16 final size:18
Alignment explanation
Indices: 9292027--9292064 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
9292017 TTTCCTTCTT
9292027 TTATATTTATTAATATTA
1 TTATATTTATTAATATTA
9292045 TTATA-TTA-TAATATTA
1 TTATATTTATTAATATTA
9292061 TTAT
1 TTAT
9292065 TAATTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 12 0.60
17 3 0.15
18 5 0.25
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTATATTTATTAATATTA
Found at i:9298187 original size:18 final size:18
Alignment explanation
Indices: 9298164--9298201 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
9298154 AAAAATCAAA
*
9298164 TTTCACTTCAATTCT-ATT
1 TTTCACATC-ATTCTCATT
9298182 TTTCACATCATTCTCATT
1 TTTCACATCATTCTCATT
9298200 TT
1 TT
9298202 GGTCTCGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (18 bp):
TTTCACATCATTCTCATT
Found at i:9299669 original size:21 final size:21
Alignment explanation
Indices: 9299645--9299684 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
9299635 AATTTATTAT
9299645 TCATTTCTTTCTTTCTTTCAG
1 TCATTTCTTTCTTTCTTTCAG
*
9299666 TCATTTCTTTCTTTGTTTC
1 TCATTTCTTTCTTTCTTTC
9299685 TTTTTAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.05, T:0.65
Consensus pattern (21 bp):
TCATTTCTTTCTTTCTTTCAG
Found at i:9313897 original size:2 final size:2
Alignment explanation
Indices: 9313890--9313918 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
9313880 TTCCTTTTCA
9313890 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
9313919 TTCTTTCTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:9321537 original size:19 final size:18
Alignment explanation
Indices: 9321515--9321552 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 18
9321505 TTAATAATCC
9321515 AAAATCAAAATAATAATAAA
1 AAAAT-AAAATAAT-ATAAA
9321535 AAAATAAAATAATATAAA
1 AAAATAAAATAATATAAA
9321553 TTTGTAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 8 0.44
20 5 0.28
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAATAAAATAATATAAA
Found at i:9322615 original size:13 final size:13
Alignment explanation
Indices: 9322597--9322651 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
9322587 GGTTTTTCAA
9322597 AAAGTCAACGGTC
1 AAAGTCAACGGTC
*
9322610 AAAGTCAACGATC
1 AAAGTCAACGGTC
* *
9322623 AACGATCAA-AGTC
1 AAAG-TCAACGGTC
9322636 AACAGTCAACGGTC
1 AA-AGTCAACGGTC
9322650 AA
1 AA
9322652 TGGTCGGTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
13 23 0.70
14 10 0.30
ACGTcount: A:0.44, C:0.24, G:0.18, T:0.15
Consensus pattern (13 bp):
AAAGTCAACGGTC
Found at i:9322626 original size:20 final size:20
Alignment explanation
Indices: 9322599--9322651 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
9322589 TTTTTCAAAA
9322599 AGTCAACGGTCAAAGTCAAC
1 AGTCAACGGTCAAAGTCAAC
*
9322619 -GATCAACGATCAAAGTCAAC
1 AG-TCAACGGTCAAAGTCAAC
9322639 AGTCAACGGTCAA
1 AGTCAACGGTCAA
9322652 TGGTCGGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.03
20 27 0.93
21 1 0.03
ACGTcount: A:0.42, C:0.25, G:0.19, T:0.15
Consensus pattern (20 bp):
AGTCAACGGTCAAAGTCAAC
Found at i:9328730 original size:29 final size:28
Alignment explanation
Indices: 9328639--9328849 Score: 106
Period size: 29 Copynumber: 7.2 Consensus size: 28
9328629 ACATTCGGGA
9328639 GTAAAATGGTAA-TTTTGAAAAAATCGAG
1 GTAAAATGGTAATTTTTG-AAAAATCGAG
* ** ** *
9328667 GTCAAAAAT-GCAATTTTTGGGAGTTCAAG
1 GT--AAAATGGTAATTTTTGAAAAATCGAG
9328696 GTTAAAATGGTAAATTTTTGAAAAATCGAG
1 G-TAAAATGGT-AATTTTTGAAAAATCGAG
* * * * * *
9328726 ATAAAAAAT-GAAATTTTTGGATATTCGGGG
1 GT--AAAATGGTAATTTTTGAAAAATC-GAG
* *
9328756 GTAAAATGGTAATTTTTGGAAAATCAAG
1 GTAAAATGGTAATTTTTGAAAAATCGAG
* * **
9328784 CTCAAAAATGG-AATTTTGGAAAGTTCGAGG
1 GT--AAAATGGTAATTTTTGAAAAATCGA-G
*
9328814 GTAAAATGGTAATTTTTGGAGAAATCGAG
1 GTAAAATGGTAATTTTT-GAAAAATCGAG
9328843 GTCAAAA
1 GT-AAAA
9328850 ATGGAGTTTT
Statistics
Matches: 132, Mismatches: 35, Indels: 30
0.67 0.18 0.15
Matches are distributed among these distances:
28 21 0.16
29 58 0.44
30 48 0.36
31 5 0.04
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.30
Consensus pattern (28 bp):
GTAAAATGGTAATTTTTGAAAAATCGAG
Found at i:9328734 original size:59 final size:58
Alignment explanation
Indices: 9328639--9328940 Score: 324
Period size: 59 Copynumber: 5.2 Consensus size: 58
9328629 ACATTCGGGA
*
9328639 GTAAAATGGTAA-TTTTGAAAAAATCGAGGTCAAAAATGCAATTTTTGGGA-GTTCAAGG
1 GTAAAATGGTAATTTTTG-AAAAATCGAGGTCAAAAATGGAATTTTT-GGATGTTCAAGG
* * * * * **
9328697 TTAAAATGGTAAATTTTTGAAAAATCGAGATAAAAAATGAAATTTTTGGATATTCGGGG
1 GTAAAATGGT-AATTTTTGAAAAATCGAGGTCAAAAATGGAATTTTTGGATGTTCAAGG
* * * * *
9328756 GTAAAATGGTAATTTTTGGAAAATCAAGCTCAAAAATGGAA-TTTTGGAAAGTTCGAGG
1 GTAAAATGGTAATTTTTGAAAAATCGAGGTCAAAAATGGAATTTTTGG-ATGTTCAAGG
* * * *
9328814 GTAAAATGGTAATTTTTGGAGAAATCGAGGTCAAAAATGGAGTTTTTGGATGTTTAGGG
1 GTAAAATGGTAATTTTT-GAAAAATCGAGGTCAAAAATGGAATTTTTGGATGTTCAAGG
* * * * *
9328873 GTAAAATGGTAATTTTTGGAAAAATTGGGGTTAAAAATGGAGTTTTT-GATGTTCGAGG
1 GTAAAATGGTAATTTTT-GAAAAATCGAGGTCAAAAATGGAATTTTTGGATGTTCAAGG
9328931 GTAAAATGGT
1 GTAAAATGGT
9328941 TCTTCCTTCA
Statistics
Matches: 206, Mismatches: 32, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
57 6 0.03
58 80 0.39
59 109 0.53
60 11 0.05
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.32
Consensus pattern (58 bp):
GTAAAATGGTAATTTTTGAAAAATCGAGGTCAAAAATGGAATTTTTGGATGTTCAAGG
Found at i:9328794 original size:30 final size:29
Alignment explanation
Indices: 9328641--9328863 Score: 118
Period size: 30 Copynumber: 7.6 Consensus size: 29
9328631 ATTCGGGAGT
* *
9328641 AAAATGGTAA-TTTTGAAAAAATCGAGGTCA
1 AAAATGG-AATTTTTG-GAAAATCAAGGTCA
* * ** *
9328671 AAAATGCAATTTTTGGGAGTTCAAGGT-T
1 AAAATGGAATTTTTGGAAAATCAAGGTCA
* * * *
9328699 AAAATGGTAAATTTTTGAAAAATCGAGATAA
1 AAAATGG--AATTTTTGGAAAATCAAGGTCA
* * * **
9328730 AAAATGAAATTTTTGGATATTCGGGGGT--
1 AAAATGGAATTTTTGGAAAATC-AAGGTCA
*
9328758 AAAATGGTAATTTTTGGAAAATCAAGCTCA
1 AAAATGG-AATTTTTGGAAAATCAAGGTCA
* *
9328788 AAAATGGAA-TTTTGGAAAGTTCGAGGGT--
1 AAAATGGAATTTTTGGAAA-ATC-AAGGTCA
*
9328816 AAAATGGTAATTTTTGGAGAAATCGAGGTCA
1 AAAATGG-AATTTTTGGA-AAATCAAGGTCA
*
9328847 AAAATGGAGTTTTTGGA
1 AAAATGGAATTTTTGGA
9328864 TGTTTAGGGG
Statistics
Matches: 144, Mismatches: 34, Indels: 30
0.69 0.16 0.14
Matches are distributed among these distances:
28 30 0.21
29 43 0.30
30 56 0.39
31 15 0.10
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (29 bp):
AAAATGGAATTTTTGGAAAATCAAGGTCA
Found at i:9328878 original size:29 final size:29
Alignment explanation
Indices: 9328846--9328925 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 29
9328836 AATCGAGGTC
9328846 AAAAATGGAGTTTTTGGATGTTTAGGGG-T
1 AAAAATGGAGTTTTTGGATGTTT-GGGGTT
* ***
9328875 -AAAATGGTAATTTTTGGAAAAATTGGGGTT
1 AAAAATGG-AGTTTTTGG-ATGTTTGGGGTT
9328905 AAAAATGGAGTTTTT-GATGTT
1 AAAAATGGAGTTTTTGGATGTT
9328926 CGAGGGTAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
28 9 0.23
29 13 0.33
30 10 0.26
31 7 0.18
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.39
Consensus pattern (29 bp):
AAAAATGGAGTTTTTGGATGTTTGGGGTT
Found at i:9328919 original size:30 final size:31
Alignment explanation
Indices: 9328695--9328920 Score: 90
Period size: 30 Copynumber: 7.7 Consensus size: 31
9328685 GGGAGTTCAA
* *
9328695 GGTT-AAAATGGTAAATTTTT-GAAAAATCGA
1 GGTTAAAAATGGT-AATTTTTGGAAAAATTGG
* * * *
9328725 GATAAAAAAT-GAAATTTTTGG--ATATTCGG
1 GGTTAAAAATGGTAATTTTTGGAAAAATT-GG
* ***
9328754 GGGT-AAAATGGTAATTTTTGG-AAAATCAA
1 GGTTAAAAATGGTAATTTTTGGAAAAATTGG
* * *
9328783 GCTCAAAAATGG-AA-TTTTGG-AAAGTTCGAG
1 GGTTAAAAATGGTAATTTTTGGAAAAATT-G-G
* * *
9328813 GG-T-AAAATGGTAATTTTTGGAGAAATCGA
1 GGTTAAAAATGGTAATTTTTGGAAAAATTGG
* * ***
9328842 GGTCAAAAATGG-AGTTTTTGG-ATGTTTAGG
1 GGTTAAAAATGGTAATTTTTGGAAAAATT-GG
9328872 GG-T-AAAATGGTAATTTTTGGAAAAATTGG
1 GGTTAAAAATGGTAATTTTTGGAAAAATTGG
*
9328901 GGTTAAAAATGG-AGTTTTTG
1 GGTTAAAAATGGTAATTTTTG
9328921 ATGTTCGAGG
Statistics
Matches: 137, Mismatches: 41, Indels: 36
0.64 0.19 0.17
Matches are distributed among these distances:
28 32 0.23
29 39 0.28
30 44 0.32
31 22 0.16
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.33
Consensus pattern (31 bp):
GGTTAAAAATGGTAATTTTTGGAAAAATTGG
Found at i:9328927 original size:117 final size:116
Alignment explanation
Indices: 9328621--9328940 Score: 360
Period size: 117 Copynumber: 2.7 Consensus size: 116
9328611 TAAGAATAGG
* * * *
9328621 ATTTTTAGACATTC-GGGAGTAAAATGGTAA-TTTTGAAAAAATCGAGGTCAAAAATGCAATTTT
1 ATTTTTGGATATTCAGGG-GTAAAATGGTAATTTTTGGAAAAATCGAGGTCAAAAATGGAATTTT
* *
9328684 TGGGAGTTCAAGGTTAAAATGGTAAATTTTTGAAAAATCGAGATAAAAAATGAA
65 T--GAGTTCGAGGGTAAAATGGTAAATTTTTGAAAAATCGAGATAAAAAATGAA
* * * *
9328738 ATTTTTGGATATTCGGGGGTAAAATGGTAATTTTTGG-AAAATCAAGCTCAAAAATGGAATTTTG
1 ATTTTTGGATATTCAGGGGTAAAATGGTAATTTTTGGAAAAATCGAGGTCAAAAATGGAATTTTT
* * * *
9328802 GAAAGTTCGAGGGTAAAATGGT-AATTTTTGGAGAAATCGAGGTCAAAAATGGA
66 G--AGTTCGAGGGTAAAATGGTAAATTTTT-GAAAAATCGAGATAAAAAATGAA
* * * * * * *
9328855 GTTTTTGGATGTTTAGGGGTAAAATGGTAATTTTTGGAAAAATTGGGGTTAAAAATGGAGTTTTT
1 ATTTTTGGATATTCAGGGGTAAAATGGTAATTTTTGGAAAAATCGAGGTCAAAAATGGAATTTTT
9328920 GATGTTCGAGGGTAAAATGGT
66 GA-GTTCGAGGGTAAAATGGT
9328941 TCTTCCTTCA
Statistics
Matches: 172, Mismatches: 24, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
115 1 0.01
116 8 0.05
117 134 0.78
118 29 0.17
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.33
Consensus pattern (116 bp):
ATTTTTGGATATTCAGGGGTAAAATGGTAATTTTTGGAAAAATCGAGGTCAAAAATGGAATTTTT
GAGTTCGAGGGTAAAATGGTAAATTTTTGAAAAATCGAGATAAAAAATGAA
Found at i:9329816 original size:49 final size:49
Alignment explanation
Indices: 9329759--9330069 Score: 383
Period size: 49 Copynumber: 6.3 Consensus size: 49
9329749 TGACTTAAAC
** * * *
9329759 CTTTCCCTTCAAATCTTCGTGGTACTAGATCTGCCGTTACGGTTTAGAT
1 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAGAT
* * *
9329808 CTTTCCCTTCATGTCTTCGTGGTACTGAATCCACCGTCACGGCTTAGAT
1 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAGAT
* * **
9329857 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCACCGTTGCAGTATTAGAT
1 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTAC-GGCTTAGAT
* * * * *
9329907 CTTTCCCGTCGTATCTTCGTGGTACTGGATCCGCCGTTGCGACTTAGAT
1 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAGAT
*
9329956 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTATGGCTTAGAT
1 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAGAT
** * *
9330005 CTTTCCCTT-ATGTCTTCACGATACTGGATCCGCCGTTGCGGTCTTAGAT
1 CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTACGG-CTTAGAT
9330054 CTTT-CCTGTCATGTCT
1 CTTTCCCT-TCATGTCT
9330070 CTGAGGTACA
Statistics
Matches: 228, Mismatches: 30, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
48 30 0.13
49 149 0.65
50 49 0.21
ACGTcount: A:0.14, C:0.28, G:0.20, T:0.38
Consensus pattern (49 bp):
CTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTACGGCTTAGAT
Found at i:9329953 original size:99 final size:96
Alignment explanation
Indices: 9329750--9330069 Score: 356
Period size: 99 Copynumber: 3.3 Consensus size: 96
9329740 TTGCCATTGT
* * ** * * *
9329750 GACTTAAACCTTTCCCTTCAAATCTTCGTGGTACTAGATCTGCCGTTACGGTTTAGATCTTTCCC
1 GACTTAGATCTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTT-CAGTTTAGATCTTTCCC
* * **
9329815 TTCATGTCTTCGTGGTACTGAATCCACCGTCAC
65 -TCATGTCTTCGTGGTACTGGATCCGCCGTTGC
* *
9329848 GGCTTAGATCTTTCCCTTCATGTCTTCGTGGTACTGGATCCACCGTTGCAGTATTAGATCTTTCC
1 GACTTAGATCTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTT-CAGT-TTAGATCTTTCC
* *
9329913 CGTCGTATCTTCGTGGTACTGGATCCGCCGTTGC
64 C-TCATGTCTTCGTGGTACTGGATCCGCCGTTGC
*
9329947 GACTTAGATCTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTT-ATGGCTTAGATCTTTCC
1 GACTTAGATCTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTCA--GTTTAGATCTTTCC
* ** *
9330011 CTTATGTCTTCACGATACTGGATCCGCCGTTGC
64 CTCATGTCTTCGTGGTACTGGATCCGCCGTTGC
*
9330044 GGTCTTAGATCTTT-CCTGTCATGTCT
1 -GACTTAGATCTTTCCCT-TCATGTCT
9330070 CTGAGGTACA
Statistics
Matches: 190, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
97 30 0.16
98 75 0.39
99 85 0.45
ACGTcount: A:0.15, C:0.28, G:0.20, T:0.37
Consensus pattern (96 bp):
GACTTAGATCTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTCAGTTTAGATCTTTCCCT
CATGTCTTCGTGGTACTGGATCCGCCGTTGC
Found at i:9330120 original size:197 final size:198
Alignment explanation
Indices: 9329750--9330160 Score: 467
Period size: 197 Copynumber: 2.1 Consensus size: 198
9329740 TTGCCATTGT
* * * *
9329750 GACTTAAACCTTTCCCTTCAAATCTTCGTGGTACTAGATCTGCCGTTACGGTTTAGATCTTTCCC
1 GACTTAGATCTTTCCCTTCAAATCTTCGTGGTACTAGATCCGCCGTTACGGCTTAGATCTTTCCC
** * *
9329815 TTCATGTCTTCGTGGTACTGAATCCACCGTCACGGCTTAGATCTTTCCCTTCATGTCTTCGTGGT
66 TTCATGTCTTCACGATACTGAATCCACCGTCACGGCTTAGATCTTTCCCTTCATGTCTTCGAGGT
* * * * * *
9329880 ACTGGATCCACCGTTGCAGTATTAGATCTTTCCCGTCGTATCTTCGTGGTACTGGATCCGCCGTT
131 ACAGGATCCACCGTTGCAGTATAAAACCCTTCCCGTCGTATCTTCGCGGTACTGGATCCGCCGTT
9329945 GC-
196 GCG
** * *
9329947 GACTTAGATCTTTCCCTTCATGTCTTCGTGGTACTGGATCCGCCGTTATGGCTTAGATCTTTCCC
1 GACTTAGATCTTTCCCTTCAAATCTTCGTGGTACTAGATCCGCCGTTACGGCTTAGATCTTTCCC
* * **
9330012 TT-ATGTCTTCACGATACTGGATCCGCCGTTGCGGTCTTAGATCTTT-CCTGTCATGTC-TCTGA
66 TTCATGTCTTCACGATACTGAATCCACCGTCACGG-CTTAGATCTTTCCCT-TCATGTCTTC-GA
* * * * *
9330074 GGTACAAGG-TTCACCGTTGC-G-ACTAAAACCCTTCCCTTTTGTATCTTTGCGGTACTGGATTC
128 GGTAC-AGGATCCACCGTTGCAGTA-TAAAACCCTTCCC-GTCGTATCTTCGCGGTACTGGATCC
9330136 GCCGTTGCG
190 GCCGTTGCG
*
9330145 GTCTTAGATCTTTCCC
1 GACTTAGATCTTTCCC
9330161 GTCGTGTTTC
Statistics
Matches: 179, Mismatches: 28, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
195 1 0.01
196 40 0.22
197 121 0.68
198 17 0.09
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.36
Consensus pattern (198 bp):
GACTTAGATCTTTCCCTTCAAATCTTCGTGGTACTAGATCCGCCGTTACGGCTTAGATCTTTCCC
TTCATGTCTTCACGATACTGAATCCACCGTCACGGCTTAGATCTTTCCCTTCATGTCTTCGAGGT
ACAGGATCCACCGTTGCAGTATAAAACCCTTCCCGTCGTATCTTCGCGGTACTGGATCCGCCGTT
GCG
Found at i:9336795 original size:29 final size:28
Alignment explanation
Indices: 9336763--9336856 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 28
9336753 TTTTAGACAT
9336763 TCGAGAGTAAAACGGTAATTTTGGAAAAA
1 TCGAG-GTAAAACGGTAATTTTGGAAAAA
* **
9336792 TCGAGGTGAAAAAC-GTAATTTTTGG-GAGT
1 TCGAGGT--AAAACGGTAA-TTTTGGAAAAA
* *
9336821 TCAAGGGTAAAATGGTAAATTTTGGAAAAA
1 TCGA-GGTAAAACGGT-AATTTTGGAAAAA
9336851 TCGAGG
1 TCGAGG
9336857 CTAGAAATGG
Statistics
Matches: 49, Mismatches: 9, Indels: 14
0.68 0.12 0.19
Matches are distributed among these distances:
28 6 0.12
29 23 0.47
30 20 0.41
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.27
Consensus pattern (28 bp):
TCGAGGTAAAACGGTAATTTTGGAAAAA
Found at i:9336999 original size:58 final size:58
Alignment explanation
Indices: 9336712--9337081 Score: 336
Period size: 59 Copynumber: 6.4 Consensus size: 58
9336702 ACTTAAGGGC
* * * * * * ** * *
9336712 AAAATGGTAATTTTGGGAAAATTTGGGGTCAAAAATGGGATTTTTAGACATTCGAGAGT
1 AAAATGGTAATTTTTGGAAAAATCGGGGT-TAAAATGGAATTTTTGGATGTTCGGGGGT
* * * * * **
9336771 AAAACGGTAA-TTTTGGAAAAATCGAGGTGAAAAACGTAATTTTTGGGA-GTTCAAGGGT
1 AAAATGGTAATTTTTGGAAAAATCGGGGT-TAAAATGGAATTTTT-GGATGTTCGGGGGT
* * * * **
9336829 AAAATGGTAAATTTTGGAAAAATCGAGGCTAGAAATGGAATTTTTGGATATTTTGGGGT
1 AAAATGGTAATTTTTGGAAAAATCGGGGTTA-AAATGGAATTTTTGGATGTTCGGGGGT
* * * * *
9336888 AAAATGATAATTTTTGGAGAAATCAGGGTCAAAAATGGAGTTTTTGGATGTTCGGGGGT
1 AAAATGGTAATTTTTGGAAAAATCGGGGT-TAAAATGGAATTTTTGGATGTTCGGGGGT
* * * *
9336947 AAAATGGTAATTTTTAGAAAAATTGGGGTTAAAATGGAGTTTTTGGAGGTTCGGGGGT
1 AAAATGGTAATTTTTGGAAAAATCGGGGTTAAAATGGAATTTTTGGATGTTCGGGGGT
* * *
9337005 AAAATGGTAATTTTTGGAAAAAT-GGGGTTAAAATGGAATTTTTGGAAGTTTGTGGGT
1 AAAATGGTAATTTTTGGAAAAATCGGGGTTAAAATGGAATTTTTGGATGTTCGGGGGT
9337062 CAAAAT-GTAA-TTTTGGAAAA
1 -AAAATGGTAATTTTTGGAAAA
9337082 GTTTAGGGGT
Statistics
Matches: 260, Mismatches: 45, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
56 10 0.04
57 34 0.13
58 100 0.38
59 115 0.44
60 1 0.00
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.33
Consensus pattern (58 bp):
AAAATGGTAATTTTTGGAAAAATCGGGGTTAAAATGGAATTTTTGGATGTTCGGGGGT
Found at i:9337092 original size:30 final size:29
Alignment explanation
Indices: 9336861--9337115 Score: 132
Period size: 29 Copynumber: 8.8 Consensus size: 29
9336851 TCGAGGCTAG
* * *
9336861 AAATGGAATTTTTGGATATTTTGGGGT-A
1 AAATGTAATTTTTGGAAAGTTTGGGGTCA
* **
9336889 AAATGATAATTTTTGGAGAA-ATCAGGGTCAA
1 AAATG-TAATTTTTGGA-AAGTTTGGGGTC-A
* * * *
9336920 AAATGGAGTTTTTGG-ATGTTCGGGGGT-A
1 AAATGTAATTTTTGGAAAGTT-TGGGGTCA
* ** *
9336948 AAATGGTAATTTTTAGAAAAATTGGGGTTA
1 AAAT-GTAATTTTTGGAAAGTTTGGGGTCA
* * * *
9336978 AAATGGAGTTTTTGG-AGGTTCGGGGGT-A
1 AAATGTAATTTTTGGAAAGTT-TGGGGTCA
** *
9337006 AAATGGTAATTTTTGGAAA-AATGGGGTTA
1 AAAT-GTAATTTTTGGAAAGTTTGGGGTCA
*
9337035 AAATGGAATTTTTGG-AAGTTTGTGGGTCA
1 AAATGTAATTTTTGGAAAGTTTG-GGGTCA
9337064 AAATGTAA-TTTTGGAAAAGTTTAGGGGTCA
1 AAATGTAATTTTTGG-AAAGTTT-GGGGTCA
** *
9337094 AAAAATAATTTTTGGACAGTTT
1 AAATGTAATTTTTGGAAAGTTT
9337116 AGGGACCTTC
Statistics
Matches: 169, Mismatches: 39, Indels: 36
0.69 0.16 0.15
Matches are distributed among these distances:
27 2 0.01
28 41 0.24
29 68 0.40
30 45 0.27
31 13 0.08
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.36
Consensus pattern (29 bp):
AAATGTAATTTTTGGAAAGTTTGGGGTCA
Found at i:9337116 original size:30 final size:29
Alignment explanation
Indices: 9337041--9337119 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 29
9337031 GTTAAAATGG
**
9337041 AATTTTTGGAAGTTT-GTGGGTCAAAATGT
1 AATTTTTGGAAGTTTAG-GGGTCAAAAAAT
9337070 AA-TTTTGGAAAAGTTTAGGGGTCAAAAAAT
1 AATTTTTGG--AAGTTTAGGGGTCAAAAAAT
9337100 AATTTTTGGACAGTTTAGGG
1 AATTTTTGGA-AGTTTAGGG
9337120 ACCTTCAGGG
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
28 6 0.14
29 3 0.07
30 27 0.63
31 7 0.16
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.37
Consensus pattern (29 bp):
AATTTTTGGAAGTTTAGGGGTCAAAAAAT
Found at i:9337876 original size:17 final size:18
Alignment explanation
Indices: 9337851--9337884 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
9337841 AAAACCTTTT
9337851 CTTTCTTTT-TTTAAAAG
1 CTTTCTTTTGTTTAAAAG
*
9337868 CTTTTTTTTGTTTAAAA
1 CTTTCTTTTGTTTAAAA
9337885 CCTAAAGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.24, C:0.09, G:0.06, T:0.62
Consensus pattern (18 bp):
CTTTCTTTTGTTTAAAAG
Found at i:9338151 original size:28 final size:27
Alignment explanation
Indices: 9338116--9338186 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 27
9338106 TATTACTATA
9338116 AATATTATATTTATTATT-AAATCCATTT
1 AATATTATATTTATTATTAAAAT--ATTT
* *
9338144 ATTATTAT-TATCATTATTAAAATATTT
1 AATATTATAT-TTATTATTAAAATATTT
9338171 AATATATATATTTATT
1 AATAT-TATATTTATT
9338187 GCTTTTTCGA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
27 9 0.26
28 21 0.60
29 5 0.14
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (27 bp):
AATATTATATTTATTATTAAAATATTT
Found at i:9338894 original size:17 final size:16
Alignment explanation
Indices: 9338860--9338963 Score: 73
Period size: 17 Copynumber: 6.1 Consensus size: 16
9338850 TATTTGGACT
* *
9338860 TTTAAATTAATTTTAA
1 TTTAAATAAATTTAAA
9338876 TTTACAATAAATTTAAA
1 TTTA-AATAAATTTAAA
9338893 TTTAAAGTAAATTTAAA
1 TTTAAA-TAAATTTAAA
** *
9338910 CTCAAAAATGAATTTAAA
1 -T-TTAAATAAATTTAAA
* *
9338928 TTTAGAACAAATTCAAA
1 TTTA-AATAAATTTAAA
* *
9338945 CTTAAAGTAAATTAAAA
1 TTTAAA-TAAATTTAAA
9338962 TT
1 TT
9338964 AAAAATTGGA
Statistics
Matches: 68, Mismatches: 14, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
16 9 0.13
17 46 0.68
18 10 0.15
19 3 0.04
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (16 bp):
TTTAAATAAATTTAAA
Found at i:9346182 original size:24 final size:24
Alignment explanation
Indices: 9346147--9346195 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
9346137 TTCCTAAAAT
*
9346147 GGAGATAAAAGGATGGTGAGA-GAA
1 GGAGATAAAAGG-GGGTGAGATGAA
9346171 GGAGA-AATAAGGGGGTGAGATGAA
1 GGAGATAA-AAGGGGGTGAGATGAA
9346195 G
1 G
9346196 TAGGACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.45, T:0.12
Consensus pattern (24 bp):
GGAGATAAAAGGGGGTGAGATGAA
Found at i:9346267 original size:16 final size:18
Alignment explanation
Indices: 9346238--9346270 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
9346228 TAATGTGCCA
9346238 AACTATTTTCGTGTTTGT
1 AACTATTTTCGTGTTTGT
9346256 AACT-TTTT-GTGTTTG
1 AACTATTTTCGTGTTTG
9346271 ACTGTTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.15, C:0.09, G:0.18, T:0.58
Consensus pattern (18 bp):
AACTATTTTCGTGTTTGT
Found at i:9349339 original size:16 final size:17
Alignment explanation
Indices: 9349314--9349345 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
9349304 AAATGCAGTG
9349314 ACAATAAAAATGCAAGC
1 ACAATAAAAATGCAAGC
9349331 ACAAT-AAAATGCAAG
1 ACAATAAAAATGCAAG
9349346 AATGCTAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.59, C:0.16, G:0.12, T:0.12
Consensus pattern (17 bp):
ACAATAAAAATGCAAGC
Found at i:9359676 original size:17 final size:17
Alignment explanation
Indices: 9359654--9359686 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9359644 CCAACTTTGC
9359654 TTTTAT-TTTCTATTTTA
1 TTTTATCTTT-TATTTTA
9359671 TTTTATCTTTTATTTT
1 TTTTATCTTTTATTTT
9359687 TCGTACTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATCTTTTATTTTA
Found at i:9375722 original size:22 final size:22
Alignment explanation
Indices: 9375696--9375753 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
9375686 ATTGGGCTAT
9375696 AAGTCGCGACATTCACTAATGA
1 AAGTCGCGACATTCACTAATGA
*
9375718 AAGTCGTGACATTCACTAATGA
1 AAGTCGCGACATTCACTAATGA
* *
9375740 AATTCACGACATTC
1 AAGTCGCGACATTC
9375754 GAGACAATAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (22 bp):
AAGTCGCGACATTCACTAATGA
Found at i:9378456 original size:18 final size:18
Alignment explanation
Indices: 9378433--9378469 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
9378423 AGGAATGACT
*
9378433 TATTGGCTCGTTAGAGCA
1 TATTGGCTCGTAAGAGCA
9378451 TATTGGCTCGTAAGAGCA
1 TATTGGCTCGTAAGAGCA
9378469 T
1 T
9378470 TACTGGATCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (18 bp):
TATTGGCTCGTAAGAGCA
Found at i:9379085 original size:419 final size:419
Alignment explanation
Indices: 9378302--9379119 Score: 1244
Period size: 419 Copynumber: 2.0 Consensus size: 419
9378292 AGTAATCCCT
9378302 GGAGTTTCCTTTTTGCTACAAATTCATCCGGTAAGTTCGTGTAATTATATCTACTTGTTAAATGC
1 GGAGTTTCCTTTTTGCTACAAATTCATCCGGTAAGTTCGTGTAATTATATCTACTTGTTAAATGC
* *
9378367 TAACCTTTATTGTGTGGTTTTAATTCTTGATGTTGGAATGTTAGGGAAGAAGCGGAAGGAATGAC
66 TAACCTTTATTGTGTGGTTTTAATTCTTGATGTTGGAACGTGAGGGAAGAAGCGGAAGGAATGAC
* * * * * * * * *
9378432 TTATTGGCTCGTTAGAGCATATTGGCTCGTAAGAGCATTACTGGATCGCCAAAGTTATTTCACTG
131 ATACTAGCTCGTTAAAGCATACTAGCTCATAAGAGCATTACTAGATCACCAAAGTTATTTCACTG
* *
9378497 GAAGACTCGAAAGGGGTATTAAAAATTGAAGACGGAAGGAATGGAAATGATAGTTCACATTCACA
196 GAAGACTCGAAAGAGGTATTAAAAATTGAAGACGGAAGGAATGGAAATGATAGTTCACACTCACA
*
9378562 TTCCCATTTTTGGTTATTACGTAAGTTAATTGTACAACGAACTTACTAAACTTTGTAAGCTAACC
261 TTCCCATTTTTGGTTATTACGTAAGTTAATTGTACAACGAACTTACTAAACTCTGTAAGCTAACC
* * * *
9378627 TGTGTATTATCTCTGTTTTGTATATTCGTTTTGCTGTTGGAGATCGAATCCCCGCAAAGAATCAC
326 TGTGTATTATCTCTCTTTTGTAGATTCATTTTACTGTTGGAGATCGAATCCCCGCAAAGAATCAC
9378692 ACTATCCCGCTCATTAGAGAGTAATTCTC
391 ACTATCCCGCTCATTAGAGAGTAATTCTC
* * *
9378721 GGAGTTTCCTTTTTGCTACAAATTCGTCTGGTAAGTTCGTGTAATTATATTCTACTTTTTAAATG
1 GGAGTTTCCTTTTTGCTACAAATTCATCCGGTAAGTTCGTGTAATTATA-TCTACTTGTTAAATG
* *
9378786 CTAACCTTTCTTGTGTGGTTTTAATTCTTGATGTTGGAACGTGAGGGAAGAAGCGGAAGGAA-GG
65 CTAACCTTTATTGTGTGGTTTTAATTCTTGATGTTGGAACGTGAGGGAAGAAGCGGAAGGAATGA
* *
9378850 CATACTAGCTCGTTAAAGCATACTAGCTCATAAGAGTATTACTAGATCACCAGAGTTATTTCACT
130 CATACTAGCTCGTTAAAGCATACTAGCTCATAAGAGCATTACTAGATCACCAAAGTTATTTCACT
* * *
9378915 GGAAGAC-CTGAAAGAGGTATTGAATATTGAAGATGGAAGGAATGGAAATGATAGTTCACACTCA
195 GGAAGACTC-GAAAGAGGTATTAAAAATTGAAGACGGAAGGAATGGAAATGATAGTTCACACTCA
* * * * * * *
9378979 CGTTCTCGTTTTTTGTTATTATGTAAGTTAATTGTACAACGAACTTACTAAGCTCTGTAAGCTTA
259 CATTCCCATTTTTGGTTATTACGTAAGTTAATTGTACAACGAACTTACTAAACTCTGTAAGCTAA
* * * **
9379044 CCTGTGTATTGTCTCTCTTTTGTAGATTCATTTTACTGTTGGAGATTGGATCCCCGGGAAGAATC
324 CCTGTGTATTATCTCTCTTTTGTAGATTCATTTTACTGTTGGAGATCGAATCCCCGCAAAGAATC
9379109 ACACTATCCCG
389 ACACTATCCCG
9379120 AGATCTTGTT
Statistics
Matches: 357, Mismatches: 40, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
418 1 0.00
419 283 0.79
420 73 0.20
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (419 bp):
GGAGTTTCCTTTTTGCTACAAATTCATCCGGTAAGTTCGTGTAATTATATCTACTTGTTAAATGC
TAACCTTTATTGTGTGGTTTTAATTCTTGATGTTGGAACGTGAGGGAAGAAGCGGAAGGAATGAC
ATACTAGCTCGTTAAAGCATACTAGCTCATAAGAGCATTACTAGATCACCAAAGTTATTTCACTG
GAAGACTCGAAAGAGGTATTAAAAATTGAAGACGGAAGGAATGGAAATGATAGTTCACACTCACA
TTCCCATTTTTGGTTATTACGTAAGTTAATTGTACAACGAACTTACTAAACTCTGTAAGCTAACC
TGTGTATTATCTCTCTTTTGTAGATTCATTTTACTGTTGGAGATCGAATCCCCGCAAAGAATCAC
ACTATCCCGCTCATTAGAGAGTAATTCTC
Found at i:9384190 original size:24 final size:24
Alignment explanation
Indices: 9384163--9384215 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
9384153 TCGGAAATTA
*
9384163 TTTCGATTCACAACGTGTTTCTTG
1 TTTCGATTCACAACGTGTTTCGTG
9384187 TTTCGATTCACAACGTGTTTCGTG
1 TTTCGATTCACAACGTGTTTCGTG
9384211 TTTCG
1 TTTCG
9384216 GTCCTTCTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.15, C:0.21, G:0.19, T:0.45
Consensus pattern (24 bp):
TTTCGATTCACAACGTGTTTCGTG
Found at i:9394249 original size:20 final size:19
Alignment explanation
Indices: 9394221--9394260 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9394211 TTGATGTGCT
*
9394221 TGCTAGTTTTCTTTTTTATC
1 TGCTAG-TTTCTTGTTTATC
*
9394241 TGCTTGTTTCTTGTTTATC
1 TGCTAGTTTCTTGTTTATC
9394260 T
1 T
9394261 TTCCGAACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.07, C:0.15, G:0.12, T:0.65
Consensus pattern (19 bp):
TGCTAGTTTCTTGTTTATC
Found at i:9395686 original size:23 final size:24
Alignment explanation
Indices: 9395660--9395705 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
9395650 TTGTATGATA
*
9395660 AATTTGGT-AACATTTTTAGTTTT
1 AATTTCGTCAACATTTTTAGTTTT
**
9395683 AATTTCGTCAATTTTTTTAGTTT
1 AATTTCGTCAACATTTTTAGTTT
9395706 AATATCTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.24, C:0.07, G:0.11, T:0.59
Consensus pattern (24 bp):
AATTTCGTCAACATTTTTAGTTTT
Found at i:9398204 original size:6 final size:6
Alignment explanation
Indices: 9398195--9398221 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9398185 TTATCTCATT
9398195 TCCACC TCCACC TCCACC TCCACC TCC
1 TCCACC TCCACC TCCACC TCCACC TCC
9398222 CCTACTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.67, G:0.00, T:0.19
Consensus pattern (6 bp):
TCCACC
Found at i:9399000 original size:41 final size:41
Alignment explanation
Indices: 9398941--9399028 Score: 140
Period size: 41 Copynumber: 2.1 Consensus size: 41
9398931 TTTATCAATT
*
9398941 AATTCTAGTGACCAAATTCTAACAATCTCCACATTAACAAG
1 AATTCTAGTCACCAAATTCTAACAATCTCCACATTAACAAG
* * *
9398982 AATTCTAGTCACCCAATTCTAACAATCTCCACCTTGACAAG
1 AATTCTAGTCACCAAATTCTAACAATCTCCACATTAACAAG
9399023 AATTCT
1 AATTCT
9399029 CTACGAACAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.38, C:0.27, G:0.07, T:0.28
Consensus pattern (41 bp):
AATTCTAGTCACCAAATTCTAACAATCTCCACATTAACAAG
Found at i:9399040 original size:17 final size:17
Alignment explanation
Indices: 9399018--9399056 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
9399008 CTCCACCTTG
* *
9399018 ACAAGAATTCTCTACGA
1 ACAAGAACTCTCAACGA
9399035 ACAAGAACTCTCAACGA
1 ACAAGAACTCTCAACGA
9399052 ACAAG
1 ACAAG
9399057 TTCTCCACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.26, G:0.13, T:0.15
Consensus pattern (17 bp):
ACAAGAACTCTCAACGA
Found at i:9401782 original size:17 final size:17
Alignment explanation
Indices: 9401754--9401801 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
9401744 TGTGGAAGAG
9401754 GTAGAGAA--CTTGTTC
1 GTAGAGAATTCTTGTTC
* *
9401769 GTTGAGAGTTCTTGTTC
1 GTAGAGAATTCTTGTTC
*
9401786 GTAGATAATTCTTGTT
1 GTAGAGAATTCTTGTT
9401802 AAGGTGGAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 6 0.23
17 20 0.77
ACGTcount: A:0.21, C:0.10, G:0.25, T:0.44
Consensus pattern (17 bp):
GTAGAGAATTCTTGTTC
Found at i:9401854 original size:41 final size:41
Alignment explanation
Indices: 9401792--9401885 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
9401782 GTTCGTAGAT
9401792 AATTCTTGTTAAGGTGGAGATTGTTAGAATTGGGTGACTAG
1 AATTCTTGTTAAGGTGGAGATTGTTAGAATTGGGTGACTAG
*
9401833 AATTTTTGTTAAGGTGGAGATTGTTAGAATTGGGTGACTAG
1 AATTCTTGTTAAGGTGGAGATTGTTAGAATTGGGTGACTAG
9401874 AATTCTTGTTAA
1 AATTCTTGTTAA
9401886 AATAAAATTC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.28, C:0.04, G:0.29, T:0.39
Consensus pattern (41 bp):
AATTCTTGTTAAGGTGGAGATTGTTAGAATTGGGTGACTAG
Found at i:9404284 original size:23 final size:20
Alignment explanation
Indices: 9404234--9404285 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
9404224 AAACTAGTTG
9404234 AATCAATTTTTAATTTTTTT
1 AATCAATTTTTAATTTTTTT
*
9404254 AATAAATTTTTAATGATTTATTT
1 AATCAATTTTTAAT--TTT-TTT
9404277 AATCAATTT
1 AATCAATTT
9404286 ATTTAGATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 13 0.48
22 3 0.11
23 11 0.41
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (20 bp):
AATCAATTTTTAATTTTTTT
Found at i:9404287 original size:13 final size:14
Alignment explanation
Indices: 9404269--9404297 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
9404259 ATTTTTAATG
9404269 ATTTATTTA-ATCA
1 ATTTATTTAGATCA
9404282 ATTTATTTAGATCA
1 ATTTATTTAGATCA
9404296 AT
1 AT
9404298 CAAAGCAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.52
Consensus pattern (14 bp):
ATTTATTTAGATCA
Found at i:9406284 original size:14 final size:14
Alignment explanation
Indices: 9406265--9406296 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
9406255 TGGGTCTGGT
9406265 TTGTGTCAGAGAGC
1 TTGTGTCAGAGAGC
9406279 TTGTGTCAGAGAGC
1 TTGTGTCAGAGAGC
9406293 TTGT
1 TTGT
9406297 ACTGTGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.19, C:0.12, G:0.34, T:0.34
Consensus pattern (14 bp):
TTGTGTCAGAGAGC
Found at i:9409945 original size:29 final size:29
Alignment explanation
Indices: 9409912--9410162 Score: 170
Period size: 30 Copynumber: 8.4 Consensus size: 29
9409902 TTTCAAAGAA
* *
9409912 TTTAGGGTTAACATATAATTTTGGGAAAG
1 TTTAGGGTTAAAATATAATTTTGGAAAAG
* * *
9409941 TTTAGGGGTTAAAATATGATTTTAGCAAAG
1 TTTA-GGGTTAAAATATAATTTTGGAAAAG
* * ** * *
9409971 TTT-GAGGTCAAAATGT-GGTTTGAGGAATG
1 TTTAG-GGTTAAAATATAATTTTG-GAAAAG
* **
9410000 TTTAGGGGTCAAAATGCAATTTTGGAAAAG
1 TTTA-GGGTTAAAATATAATTTTGGAAAAG
* * *
9410030 TTTAAGGGTTAAAATGTAACTTTAGAAAAG
1 TTT-AGGGTTAAAATATAATTTTGGAAAAG
* *
9410060 TTTGAGGGGTCAAAATGTAATTTTGGAAAAG
1 TTT-A-GGGTTAAAATATAATTTTGGAAAAG
9410091 TTTA-GGTTCAAAATGA-AATTTTGGAAAAG
1 TTTAGGGTT-AAAAT-ATAATTTTGGAAAAG
* * *
9410120 TTCAAGGTCAAAATGA-AATTTTGGAAAAG
1 TTTAGGGTTAAAAT-ATAATTTTGGAAAAG
9410149 TTTAAGGGTTAAAA
1 TTT-AGGGTTAAAA
9410163 ACAAATTTTT
Statistics
Matches: 179, Mismatches: 31, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
28 7 0.04
29 63 0.35
30 78 0.44
31 31 0.17
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.33
Consensus pattern (29 bp):
TTTAGGGTTAAAATATAATTTTGGAAAAG
Found at i:9409952 original size:30 final size:30
Alignment explanation
Indices: 9409927--9410162 Score: 219
Period size: 29 Copynumber: 7.9 Consensus size: 30
9409917 GGTTAACATA
* * *
9409927 TAATTTTGGGAAAGTTTAGGGGTTAAAATA
1 TAATTTTGGAAAAGTTTAGGGGTCAAAATG
* * * *
9409957 TGATTTTAGCAAAGTTT-GAGGTCAAAATG
1 TAATTTTGGAAAAGTTTAGGGGTCAAAATG
** * *
9409986 T-GGTTTGAGGAATGTTTAGGGGTCAAAATG
1 TAATTTTG-GAAAAGTTTAGGGGTCAAAATG
* * *
9410016 CAATTTTGGAAAAGTTTAAGGGTTAAAATG
1 TAATTTTGGAAAAGTTTAGGGGTCAAAATG
* *
9410046 TAACTTTAGAAAAGTTTGAGGGGTCAAAATG
1 TAATTTTGGAAAAGTTT-AGGGGTCAAAATG
*
9410077 TAATTTTGGAAAAGTTTA-GGTTCAAAATG
1 TAATTTTGGAAAAGTTTAGGGGTCAAAATG
* * *
9410106 AAATTTTGGAAAAGTTCA-AGGTCAAAATG
1 TAATTTTGGAAAAGTTTAGGGGTCAAAATG
* * *
9410135 AAATTTTGGAAAAGTTTAAGGGTTAAAA
1 TAATTTTGGAAAAGTTTAGGGGTCAAAA
9410163 ACAAATTTTT
Statistics
Matches: 167, Mismatches: 34, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
28 3 0.02
29 69 0.41
30 65 0.39
31 30 0.18
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.33
Consensus pattern (30 bp):
TAATTTTGGAAAAGTTTAGGGGTCAAAATG
Found at i:9410030 original size:89 final size:89
Alignment explanation
Indices: 9409928--9410162 Score: 244
Period size: 89 Copynumber: 2.6 Consensus size: 89
9409918 GTTAACATAT
* * * * * *
9409928 AATTTTGGGAAAGTTTAGGGGTTAAAATATGATTTTAGCAAAGTTTGA-GGTCAAAATGT-GGTT
1 AATTTTGGAAAAGTTTAAGGGTTAAAATATAACTTTAGAAAAGTTTGAGGGTCAAAATGTAAGTT
* * *
9409991 TGAGGAATGTTTAGGGGTCAAAATGC
66 TG-GAAAAGTTTA-GGGTCAAAATGA
* *
9410017 AATTTTGGAAAAGTTTAAGGGTTAAAATGTAACTTTAGAAAAGTTTGAGGGGTCAAAATGTAATT
1 AATTTTGGAAAAGTTTAAGGGTTAAAATATAACTTTAGAAAAGTTTGA-GGGTCAAAATGTAAGT
*
9410082 TTGGAAAAGTTTAGGTTCAAAATGA
65 TTGGAAAAGTTTAGGGTCAAAATGA
* * * * * *
9410107 AATTTTGGAAAAGTTCAA-GGTCAAAATGA-AATTTTGGAAAAGTTTAAGGGTTAAAA
1 AATTTTGGAAAAGTTTAAGGGTTAAAAT-ATAACTTTAGAAAAGTTTGAGGGTCAAAA
9410163 ACAAATTTTT
Statistics
Matches: 123, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
88 8 0.07
89 65 0.53
90 27 0.22
91 19 0.15
92 4 0.03
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.33
Consensus pattern (89 bp):
AATTTTGGAAAAGTTTAAGGGTTAAAATATAACTTTAGAAAAGTTTGAGGGTCAAAATGTAAGTT
TGGAAAAGTTTAGGGTCAAAATGA
Found at i:9410032 original size:59 final size:59
Alignment explanation
Indices: 9409931--9410152 Score: 211
Period size: 60 Copynumber: 3.8 Consensus size: 59
9409921 AACATATAAT
* * * * * **
9409931 TTTG-GGAAAGTTTAGGGGTTAAAATATGATTTTAGCAAAGTTTGAGGTCAAAATGT-GG
1 TTTGAGGAAAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTT-AGGTCAAAATGTAAC
* * *
9409989 TTTGAGGAATGTTTAGGGGTCAAAATGCAATTTTGGAAAAGTTTAAGGGTTAAAATGTAAC
1 TTTGAGGAAAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTT-A-GGTCAAAATGTAAC
* * *
9410050 TTT-AGAAAAGTTTGAGGGGTCAAAATGTAATTTTGGAAAAGTTTAGGTTCAAAATGAAAT
1 TTTGAGGAAAGTTT-AGGGGTCAAAATGTAATTTTGGAAAAGTTTAGG-TCAAAATGTAAC
* * * *
9410110 TTTG-GAAAAGTTCA-AGGTCAAAATGAAATTTTGGAAAAGTTTA
1 TTTGAGGAAAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTA
9410153 AGGGTTAAAA
Statistics
Matches: 138, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
58 31 0.22
59 36 0.26
60 39 0.28
61 32 0.23
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.33
Consensus pattern (59 bp):
TTTGAGGAAAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTAGGTCAAAATGTAAC
Found at i:9410171 original size:30 final size:30
Alignment explanation
Indices: 9409999--9410171 Score: 190
Period size: 30 Copynumber: 5.8 Consensus size: 30
9409989 TTTGAGGAAT
* * *
9409999 GTTTAGGGGTCAAAATGCAATTTTGGAAAA
1 GTTTAAGGGTTAAAATGAAATTTTGGAAAA
* * *
9410029 GTTTAAGGGTTAAAATGTAACTTTAGAAAA
1 GTTTAAGGGTTAAAATGAAATTTTGGAAAA
* * *
9410059 GTTTGAGGGGTCAAAATGTAATTTTGGAAAA
1 GTTT-AAGGGTTAAAATGAAATTTTGGAAAA
9410090 GTTT-A-GGTTCAAAATGAAATTTTGGAAAA
1 GTTTAAGGGTT-AAAATGAAATTTTGGAAAA
* *
9410119 GTTCAA-GGTCAAAATGAAATTTTGGAAAA
1 GTTTAAGGGTTAAAATGAAATTTTGGAAAA
**
9410148 GTTTAAGGGTTAAAAACAAATTTT
1 GTTTAAGGGTTAAAATGAAATTTT
9410172 TAGAAAGTTT
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.02
29 45 0.37
30 47 0.39
31 26 0.21
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (30 bp):
GTTTAAGGGTTAAAATGAAATTTTGGAAAA
Found at i:9412091 original size:84 final size:85
Alignment explanation
Indices: 9411901--9412065 Score: 246
Period size: 85 Copynumber: 2.0 Consensus size: 85
9411891 TTGCTTCATT
9411901 GATTTGGTCTACT-TCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGATTTAACCCACTTCT
1 GATTTGGTCTACTAT-TCTGTATCTCATCAAGAAGATGACTGCCTCATTGATTTAACCCACTTCT
9411965 TTGTATCTCATCAGGAAAACA
65 TTGTATCTCATCAGGAAAACA
* * * * *
9411986 GATTTGGTCTACTTTTCTGTATCTCATCAGGAAGATGACCT-CTTTATTG-TTTGACCCACTTCT
1 GATTTGGTCTACTATTCTGTATCTCATCAAGAAGATGA-CTGCCTCATTGATTTAACCCACTTCT
9412049 TTGTATCTCATCAGGAA
65 TTGTATCTCATCAGGAA
9412066 GATAGGGTTT
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
84 30 0.41
85 41 0.55
86 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.38
Consensus pattern (85 bp):
GATTTGGTCTACTATTCTGTATCTCATCAAGAAGATGACTGCCTCATTGATTTAACCCACTTCTT
TGTATCTCATCAGGAAAACA
Found at i:9412137 original size:207 final size:208
Alignment explanation
Indices: 9411780--9412386 Score: 875
Period size: 207 Copynumber: 2.9 Consensus size: 208
9411770 GCTTTATCTC
* *
9411780 TTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACCTCTTTATTGCTTCGACCCACTTCTCTGT
1 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGT
* * **
9411845 ATCTCATCAGGAAGATAGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTGATTTGGTC
66 ATCTCATCAGGAAGATA-GGGTTTGAAGTCTCATTCGTATTGAGCTTTGCTTCATTGATTTGGTC
9411910 TACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGATTT-AACCCACTTCTT-TGTATCT
130 TACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTG-TTTCAACCCACTT-TTCTGTATCT
*
9411973 CATCAGGAAA-ACAGAT
193 CATCA-AAAAGACAGAT
* *
9411989 TTGGTCTACTTTTCTGTATCTCATCAGGAAGATGACCTCTTTATTG-TTTGACCCACTTCTTTGT
1 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGT
* *
9412053 ATCTCATCAGGAAGATAGGGTTTGAAGTCTCATTTGTATTGAGCTTCGCTTCATTGATTTGGTCT
66 ATCTCATCAGGAAGATAGGGTTTGAAGTCTCATTCGTATTGAGCTTTGCTTCATTGATTTGGTCT
** * **
9412118 ACTTCTCTGTATCTCATCAAGAAGATGACCACTTCATTGTTTCAATTCACTTTTCTGTATCTCAT
131 ACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGTTTCAACCCACTTTTCTGTATCTCAT
*
9412183 CAAAAAGACGGAT
196 CAAAAAGACAGAT
* * * *
9412196 TAGGTCTACTTCTCTATATCTCATCAGGAAGATGATCACTTTATTGCTTTGACCCACTTCTCTGT
1 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGT
* * *
9412261 ATCTCATGAGGAAGAT-GTGGTTTG-ATTCTCATTCGTATTGAGCTTTGCTTTATTGATTTGGTC
66 ATCTCATCAGGAAGATAG-GGTTTGAAGTCTCATTCGTATTGAGCTTTGCTTCATTGATTTGGTC
** **
9412324 TACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGTTTCAGTCCACTACTCTGTATCT
130 TACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGTTTCAACCCACTTTTCTGTATCT
9412387 AATTAGGAAA
Statistics
Matches: 358, Mismatches: 35, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
206 8 0.02
207 235 0.66
208 71 0.20
209 44 0.12
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (208 bp):
TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGT
ATCTCATCAGGAAGATAGGGTTTGAAGTCTCATTCGTATTGAGCTTTGCTTCATTGATTTGGTCT
ACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGTTTCAACCCACTTTTCTGTATCTCAT
CAAAAAGACAGAT
Found at i:9412260 original size:85 final size:85
Alignment explanation
Indices: 9412108--9412267 Score: 223
Period size: 85 Copynumber: 1.9 Consensus size: 85
9412098 TCGCTTCATT
* * ** *
9412108 GATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACTTCATTGTTTCAATTCACTTTTC
1 GATTAGGTCTACTTCTCTATATCTCATCAAGAAGATGACCACTTCATTGTTTCAACCCACTTCTC
9412173 TGTATCTCATCAAAAAGACG
66 TGTATCTCATCAAAAAGACG
* * * *
9412193 GATTAGGTCTACTTCTCTATATCTCATCAGGAAGATGATCACTTTATTGCTTT-GACCCACTTCT
1 GATTAGGTCTACTTCTCTATATCTCATCAAGAAGATGACCACTTCATTG-TTTCAACCCACTTCT
9412257 CTGTATCTCAT
65 CTGTATCTCAT
9412268 GAGGAAGATG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
85 62 0.95
86 3 0.05
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.39
Consensus pattern (85 bp):
GATTAGGTCTACTTCTCTATATCTCATCAAGAAGATGACCACTTCATTGTTTCAACCCACTTCTC
TGTATCTCATCAAAAAGACG
Found at i:9412522 original size:171 final size:170
Alignment explanation
Indices: 9412207--9412566 Score: 504
Period size: 171 Copynumber: 2.1 Consensus size: 170
9412197 AGGTCTACTT
* * * * *
9412207 CTCTATATCTCATCAGGAAGATGATCACTTTATTGCTTTGACCCACTTCTCTGTATCTCATGAGG
1 CTCTGTATCTCATCAGGAAAATGATCACTTTATTGCTTTAACCCACTTCTCTGTATCTCATCAGA
* * * * *
9412272 AAGATGTGGTTTGATTCTCATTCGTATTGAGCTTTGCTTTATTGATTTGGTCTACTTCTCTGTAT
66 AAGATGGGGTTTGAGTCTCATTCGTATTGAGATTCGCTTTATTGATTTGGTCTACTTCTCTATAT
* *
9412337 CTCATCAAGAAGATGACTGCCTCATTGTTTCAGTCCACTA
131 CTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCACTA
* * * * * * *
9412377 CTCTGTATCTAATTAGGAAAATGATCGCTTTATTGCTTTAACTCACTTTTTTGTATCTTATCAGA
1 CTCTGTATCTCATCAGGAAAATGATCACTTTATTGCTTTAACCCACTTCTCTGTATCTCATCAGA
*
9412442 AAGATGGGGTTTGAAGTCTTATTCGTATTGAGATTCGCTTTATTGATTTGGTCTACTTCTCTATA
66 AAGATGGGGTTTG-AGTCTCATTCGTATTGAGATTCGCTTTATTGATTTGGTCTACTTCTCTATA
* * *
9412507 TCTCATTAGGAAGATGACCGCCTCATTGTTTCAATCCACTT
130 TCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCACTA
9412548 CTCTGTATCTCATCAGGAA
1 CTCTGTATCTCATCAGGAA
9412567 GACGAATTTT
Statistics
Matches: 164, Mismatches: 25, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
170 65 0.40
171 99 0.60
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.41
Consensus pattern (170 bp):
CTCTGTATCTCATCAGGAAAATGATCACTTTATTGCTTTAACCCACTTCTCTGTATCTCATCAGA
AAGATGGGGTTTGAGTCTCATTCGTATTGAGATTCGCTTTATTGATTTGGTCTACTTCTCTATAT
CTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCACTA
Found at i:9412522 original size:378 final size:378
Alignment explanation
Indices: 9412001--9412698 Score: 966
Period size: 378 Copynumber: 1.8 Consensus size: 378
9411991 GGTCTACTTT
* * * * *
9412001 TCTGTATCTCATCAGGAAGATGACCTCTTTATTGTTTGACCCACTTCTTTGTATCTCATCAGGAA
1 TCTGTATCTAATCAGGAAAATGACCGCTTTATTGTTTAACCCACTTCTTTGTATCTCATCAGAAA
* * *
9412066 GATAGGGTTTGAAGTCTCATTTGTATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTGTATC
66 GATAGGGTTTGAAGTCTCATTCGTATTGAGATTCGCTTCATTGATTTGGTCTACTTCTCTATATC
* * * *
9412131 TCATCAAGAAGATGACCACTTCATTGTTTCAATTCACTTTTCTGTATCTCATCAAAAAGACGGAT
131 TCATCAAGAAGATGACCACCTCATTGTTTCAATCCACTTCTCTGTATCTCATCAAAAAGACGAAT
* * ** * * * *
9412196 TAGGTCTACTTCTCTATATCTCATCAGGAAGATGATCACTTTATTGCTTTGACCCACTTCTCTGT
196 TAGGTCCACTTCTCTATATCACATCAAAAAGATGACCACTTTATTACTCTGACCCACTTCTATGT
* ** * * ** *
9412261 ATCTCATGAGGAAGATGTGGTTTGA-TTCTCATTCGTATTGAGCTTTGCTTTATTGATTTGGTCT
261 ATCTCATCAGGAAGATGCAGTTTGAGGTCTCACTCACATTGAGCTTCGCTTTATTGATTTGGTCT
9412325 ACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGTTTCAGTCCACTAC
326 ACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGTTTCAGTCCACTAC
* * * * *
9412378 TCTGTATCTAATTAGGAAAATGATCGCTTTATTGCTTTAACTCACTTTTTTGTATCTTATCAGAA
1 TCTGTATCTAATCAGGAAAATGACCGCTTTATTG-TTTAACCCACTTCTTTGTATCTCATCAGAA
* * *
9412443 AGATGGGGTTTGAAGTCTTATTCGTATTGAGATTCGCTTTATTGATTTGGTCTACTTCTCTATAT
65 AGATAGGGTTTGAAGTCTCATTCGTATTGAGATTCGCTTCATTGATTTGGTCTACTTCTCTATAT
* * * **
9412508 CTCATTAGGAAGATGACCGCCTCATTGTTTCAATCCACTTCTCTGTATCTCATCAGGAAGACGAA
130 CTCATCAAGAAGATGACCACCTCATTGTTTCAATCCACTTCTCTGTATCTCATCAAAAAGACGAA
** * * *
9412573 TTTTGTCCATTTCTCTGTATCACATCAAAAAGATGACCTCTTTATTACTCTGACCCACTTCTATG
195 TTAGGTCCACTTCTCTATATCACATCAAAAAGATGACCACTTTATTACTCTGACCCACTTCTATG
9412638 TATCTCATCAGGAAGATGCAGTTTGAGGTCTCACTCACATTGAGCTTCGCTTTATTGATTT
260 TATCTCATCAGGAAGATGCAGTTTGAGGTCTCACTCACATTGAGCTTCGCTTTATTGATTT
9412699 TGATGTTTCA
Statistics
Matches: 273, Mismatches: 46, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
377 29 0.11
378 215 0.79
379 29 0.11
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (378 bp):
TCTGTATCTAATCAGGAAAATGACCGCTTTATTGTTTAACCCACTTCTTTGTATCTCATCAGAAA
GATAGGGTTTGAAGTCTCATTCGTATTGAGATTCGCTTCATTGATTTGGTCTACTTCTCTATATC
TCATCAAGAAGATGACCACCTCATTGTTTCAATCCACTTCTCTGTATCTCATCAAAAAGACGAAT
TAGGTCCACTTCTCTATATCACATCAAAAAGATGACCACTTTATTACTCTGACCCACTTCTATGT
ATCTCATCAGGAAGATGCAGTTTGAGGTCTCACTCACATTGAGCTTCGCTTTATTGATTTGGTCT
ACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGTTTCAGTCCACTAC
Found at i:9412803 original size:39 final size:39
Alignment explanation
Indices: 9412748--9413024 Score: 358
Period size: 39 Copynumber: 7.1 Consensus size: 39
9412738 ATGATGGTTG
* *
9412748 CAATCTACCCTATGATCGGGGTAAGAGATTGGATGGCTA
1 CAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTA
* * *
9412787 CAATTTGTCCCGTGATCGGGGTAAGAGATTGGATGGCTA
1 CAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTA
* ** *
9412826 CAATTTATCCCGTGATCGGGGTAAGAGATTGGATGGCTA
1 CAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTA
* *
9412865 CAATCTGCACCATGATCGGGGTAAGAGATTGGATGGCTG
1 CAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTA
* * * *
9412904 CAATCTGCCCCACGATTGAGGTAAGAGATTGGATGGCTG
1 CAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTA
* * * * *
9412943 GAATCTGCCCCACGATTGAGGTAAGAGATTGGATGGCTG
1 CAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTA
*
9412982 CAATCTGCCCCATGATCGGGGTAAGAGATTGGAT-GCTT
1 CAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTA
9413020 CAATC
1 CAATC
9413025 CTTCTCATCA
Statistics
Matches: 216, Mismatches: 22, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
38 8 0.04
39 208 0.96
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (39 bp):
CAATCTGCCCCATGATCGGGGTAAGAGATTGGATGGCTA
Found at i:9413196 original size:99 final size:99
Alignment explanation
Indices: 9413019--9413290 Score: 278
Period size: 99 Copynumber: 2.7 Consensus size: 99
9413009 ATTGGATGCT
* ** * * * * **
9413019 TCAATCCTTCTCATCATGTTTTCTTAAGGTACTGGGTTCGTCGTTGTGGCATCAAGTTTTCCCTT
1 TCAATCCTTCCCATCACATCTTC-TAAGGTACCGGGTTCGCCGTTGTGGCCTCAACCTTTCCCTT
*
9413084 CATATCTTCATGGTGTAGAATTCGCCATTGCA-GAC
65 CATATCTTCATGGTATAGAATTCGCCATT-CAGGAC
* * *
9413119 TCAATCCTTCCCATCACATCTTCTAATGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCTTTC
1 TCAATCCTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGTGGCCTCAACCTTTCCCTTC
* * * * * *
9413184 ATATCTTTATGGTATCGAGTTCGCCGTTTAGGCC
66 ATATCTTCATGGTATAGAATTCGCCATTCAGGAC
* * * * *
9413218 TCAA-CCTTTCCCATCACATCTTCTAAGGTATCGGCTTCACCATTGTGGCCTCAACCTTTCCCAT
1 TCAATCC-TTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGTGGCCTCAACCTTTCCCTT
*
9413282 CACATCTTC
65 CATATCTTC
9413291 TAAGGTACGG
Statistics
Matches: 141, Mismatches: 29, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
98 3 0.02
99 119 0.84
100 19 0.13
ACGTcount: A:0.18, C:0.30, G:0.16, T:0.36
Consensus pattern (99 bp):
TCAATCCTTCCCATCACATCTTCTAAGGTACCGGGTTCGCCGTTGTGGCCTCAACCTTTCCCTTC
ATATCTTCATGGTATAGAATTCGCCATTCAGGAC
Found at i:9413535 original size:50 final size:50
Alignment explanation
Indices: 9413118--9413536 Score: 359
Period size: 50 Copynumber: 8.5 Consensus size: 50
9413108 CCATTGCAGA
* * * * *
9413118 CTCAATCC-TTCCCATCACATCTTCTAATGTACCGGGTTCGCCGTTGCGGC
1 CTCAA-CCTTTCCCTTCAAATCTTCTAAGGTATCGGGTTCACCGTTGCGGC
* * * * * **
9413168 CTCAACCTTTCCTTTCATATCTT-TATGGTATCGAGTTCGCCGTTTAGGC
1 CTCAACCTTTCCCTTCAAATCTTCTAAGGTATCGGGTTCACCGTTGCGGC
* * * * *
9413217 CTCAACCTTTCCCATCACATCTTCTAAGGTATCGGCTTCACCATTGTGGC
1 CTCAACCTTTCCCTTCAAATCTTCTAAGGTATCGGGTTCACCGTTGCGGC
* * *
9413267 CTCAACCTTTCCCATCACATCTTCTAAGGTA-CGGGGTTTACCGTTGCGGC
1 CTCAACCTTTCCCTTCAAATCTTCTAAGGTATC-GGGTTCACCGTTGCGGC
* * * * * *
9413317 CTCAACTTTTCCCTTCAAATATTC-ACA-GTATCGGGTTCATCATTGTGAC
1 CTCAACCTTTCCCTTCAAATCTTCTA-AGGTATCGGGTTCACCGTTGCGGC
* * * ** * *
9413366 CTCAACCTTTTCCTTTAAATCTT-TATGGTA-CCAGTTTACCGTTGTGGC
1 CTCAACCTTTCCCTTCAAATCTTCTAAGGTATCGGGTTCACCGTTGCGGC
* * * * *
9413414 CTCAACCTTTCCCTTCAAATCTTC-ATGGTACCGGGTTCGCTGTTACGGC
1 CTCAACCTTTCCCTTCAAATCTTCTAAGGTATCGGGTTCACCGTTGCGGC
* * *
9413463 CTCAACCTTTCCCATCACATCTTCTAAGGTATCGGGTTCGCCGTTGCGGC
1 CTCAACCTTTCCCTTCAAATCTTCTAAGGTATCGGGTTCACCGTTGCGGC
* * *
9413513 TTCAACCTTTCCCTTTATATCTTC
1 CTCAACCTTTCCCTTCAAATCTTC
9413537 ATAGTACCTC
Statistics
Matches: 297, Mismatches: 62, Indels: 20
0.78 0.16 0.05
Matches are distributed among these distances:
48 39 0.13
49 115 0.39
50 143 0.48
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.35
Consensus pattern (50 bp):
CTCAACCTTTCCCTTCAAATCTTCTAAGGTATCGGGTTCACCGTTGCGGC
Found at i:9413535 original size:99 final size:97
Alignment explanation
Indices: 9413146--9413544 Score: 359
Period size: 99 Copynumber: 4.1 Consensus size: 97
9413136 ATCTTCTAAT
* ** * * *
9413146 GTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCTTTCATATCTTTATGGTATCGAGTTCGCCGT
1 GTACCGGGTTCGCCATTGCGGCCTCAACCTTTCCCATCACATCTTTAAGGTA-CGAGTTCACCGT
** * *
9413211 TTAGGCCTCAACCTTTCCCATCACATCTTC-TAA
65 TGCGGCCTCAACCTTTCCCTTCAAATCTTCAT-A
* * * * * *
9413244 GGTATCGGCTTCACCATTGTGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACGGGGTTTACC
1 -GTACCGGGTTCGCCATTGCGGCCTCAACCTTTCCCATCACATCTT-TAAGGTAC-GAGTTCACC
* * *
9413309 GTTGCGGCCTCAACTTTTCCCTTCAAATATTCACA
63 GTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATA
* ** * * * * * * * * *
9413344 GTATCGGGTTCATCATTGTGACCTCAACCTTTTCCTTTAAATCTTTATGGTACCAGTTTACCGTT
1 GTACCGGGTTCGCCATTGCGGCCTCAACCTTTCCCATCACATCTTTAAGGTACGAGTTCACCGTT
* *
9413409 GTGGCCTCAACCTTTCCCTTCAAATCTTCATG
66 GCGGCCTCAACCTTTCCCTTCAAATCTTCATA
** * * *
9413441 GTACCGGGTTCGCTGTTACGGCCTCAACCTTTCCCATCACATCTTCTAAGGTATCGGGTTCGCCG
1 GTACCGGGTTCGCCATTGCGGCCTCAACCTTTCCCATCACATCTT-TAAGGTA-CGAGTTCACCG
* * *
9413506 TTGCGGCTTCAACCTTTCCCTTTATATCTTCATA
64 TTGCGGCCTCAACCTTTCCCTTCAAATCTTCATA
9413540 GTACC
1 GTACC
9413545 TCAGTTCATT
Statistics
Matches: 239, Mismatches: 56, Indels: 10
0.78 0.18 0.03
Matches are distributed among these distances:
97 70 0.29
98 13 0.05
99 117 0.49
100 39 0.16
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (97 bp):
GTACCGGGTTCGCCATTGCGGCCTCAACCTTTCCCATCACATCTTTAAGGTACGAGTTCACCGTT
GCGGCCTCAACCTTTCCCTTCAAATCTTCATA
Found at i:9414472 original size:13 final size:13
Alignment explanation
Indices: 9414454--9414483 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9414444 TGACCTCTCC
9414454 TTTTCTTTTTCCT
1 TTTTCTTTTTCCT
*
9414467 TTTTCTTTTTTCT
1 TTTTCTTTTTCCT
9414480 TTTT
1 TTTT
9414484 TTATATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTCTTTTTCCT
Found at i:9419986 original size:29 final size:29
Alignment explanation
Indices: 9419953--9420149 Score: 222
Period size: 29 Copynumber: 6.8 Consensus size: 29
9419943 TTTCAGAGAA
*
9419953 TTTAGAGTTAAAATGCAATTTTGGAAAAG
1 TTTAGGGTTAAAATGCAATTTTGGAAAAG
*
9419982 TTTAGGAG-TAAAATGTAATTTTGGAAAAG
1 TTTAGG-GTTAAAATGCAATTTTGGAAAAG
* * * *
9420011 TTTGGGGGTCAAAATG-TATCTTTAGAAAAG
1 TTT-AGGGTTAAAATGCAAT-TTTGGAAAAG
*
9420041 TTTGAGGGTTAAAATGTAATTTTGGAAAAG
1 TTT-AGGGTTAAAATGCAATTTTGGAAAAG
* *
9420071 TATAAGGTTAAAATGCAATTTTGGAAAAG
1 TTTAGGGTTAAAATGCAATTTTGGAAAAG
* *
9420100 TTT-GGGTTCAAATGCTATTTTGGAAAAG
1 TTTAGGGTTAAAATGCAATTTTGGAAAAG
9420128 TTTAAGGGTTAAAAT-CAATTTT
1 TTT-AGGGTTAAAATGCAATTTT
9420150 TTGGAAAGTT
Statistics
Matches: 142, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
28 25 0.18
29 63 0.44
30 52 0.37
31 2 0.01
ACGTcount: A:0.38, C:0.04, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTAGGGTTAAAATGCAATTTTGGAAAAG
Found at i:9420825 original size:2 final size:2
Alignment explanation
Indices: 9420818--9420850 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
9420808 GGAATACACT
9420818 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9420851 GCGTATAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9423540 original size:30 final size:30
Alignment explanation
Indices: 9423506--9423834 Score: 407
Period size: 30 Copynumber: 11.0 Consensus size: 30
9423496 GGATTTAAGG
9423506 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* ***
9423536 AAGTTTTAGGGTCAAAATGTAATTTCCAAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* * *
9423566 AAGTTTTGAGGTTAAAATATAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* *
9423596 AAGTTTTGGGGTTAAAATGTAATTTT-TAGA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGA-A
*
9423626 AAGTTTTGGGGTCAAAATATAATTTT-GAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
9423655 AAGTTTTGGGGT-AGAAATGTAATTTTGGAA
1 AAGTTTTGGGGTCA-AAATGTAATTTTGGAA
* *
9423685 AAGTTTTAGGGTCAAAATGTAATTTCTAG-A
1 AAGTTTTGGGGTCAAAATGTAATTT-TGGAA
* *
9423715 AAGTTTTGGGGTTAAAATATAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
*
9423745 AAGTTTTGGGGTCGAAATGTAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
** * *
9423775 AAGTTTTAAGGTTAAAATGTAATTTT-CAGA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGA-A
9423805 AAGTTTTGGGGTCAAAATGTAATTTCTGGA
1 AAGTTTTGGGGTCAAAATGTAATTT-TGGA
9423835 TAATTTAGGG
Statistics
Matches: 254, Mismatches: 36, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
28 1 0.00
29 28 0.11
30 220 0.87
31 4 0.02
32 1 0.00
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (30 bp):
AAGTTTTGGGGTCAAAATGTAATTTTGGAA
Found at i:9425637 original size:28 final size:28
Alignment explanation
Indices: 9425602--9425663 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
9425592 GCCCAATTGA
*
9425602 GCTTTTTGTAATCGGGCCTTTAATTTGG
1 GCTTTTTGTAATCGAGCCTTTAATTTGG
9425630 GCTTTTTGTAATCGAGCCTTTAATTTGG
1 GCTTTTTGTAATCGAGCCTTTAATTTGG
9425658 GCTTTT
1 GCTTTT
9425664 GGAAATGGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.15, C:0.15, G:0.23, T:0.48
Consensus pattern (28 bp):
GCTTTTTGTAATCGAGCCTTTAATTTGG
Found at i:9425726 original size:17 final size:17
Alignment explanation
Indices: 9425706--9425770 Score: 73
Period size: 17 Copynumber: 4.0 Consensus size: 17
9425696 TTAATATTAT
* *
9425706 TTTAAATTAAGTTTAAA
1 TTTAAAATAAATTTAAA
9425723 TTTAAAATAAATTTAAA
1 TTTAAAATAAATTTAAA
*
9425740 --T-AAGTAAATTTAAA
1 TTTAAAATAAATTTAAA
*
9425754 TTTAAGATAAATTTAAA
1 TTTAAAATAAATTTAAA
9425771 AATGAATTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
14 12 0.30
15 1 0.03
16 1 0.03
17 26 0.65
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.42
Consensus pattern (17 bp):
TTTAAAATAAATTTAAA
Found at i:9425733 original size:11 final size:11
Alignment explanation
Indices: 9425719--9425789 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
9425709 AAATTAAGTT
9425719 TAAATTTAAAA
1 TAAATTTAAAA
9425730 TAAATTT-AAA
1 TAAATTTAAAA
* *
9425740 T-AA-GTAAATT
1 TAAATTTAAA-A
*
9425750 TAAATTTAAGA
1 TAAATTTAAAA
9425761 TAAATTTAAAAA
1 TAAATTT-AAAA
*
9425773 TGAATTTAAAA
1 TAAATTTAAAA
*
9425784 TTAATT
1 TAAATT
9425790 CAAACTTTAA
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
8 1 0.02
9 4 0.09
10 5 0.11
11 25 0.53
12 12 0.26
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.39
Consensus pattern (11 bp):
TAAATTTAAAA
Found at i:9425755 original size:31 final size:29
Alignment explanation
Indices: 9425690--9425787 Score: 99
Period size: 31 Copynumber: 3.3 Consensus size: 29
9425680 TTTTAATTTA
* * * * *
9425690 TTAAATTTAATAT-TATTTTAAATTAAGT
1 TTAAATTTAAAATAAATTTAAAAATAAAT
9425718 TTAAATTTAAAATAAATTTAAATAAGTAAAT
1 TTAAATTTAAAATAAATTTAAA-AA-TAAAT
* *
9425749 TTAAATTTAAGATAAATTTAAAAATGAAT
1 TTAAATTTAAAATAAATTTAAAAATAAAT
*
9425778 TTAAAATTAA
1 TTAAATTTAA
9425788 TTCAAACTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 12 0.20
29 19 0.32
30 3 0.05
31 25 0.42
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (29 bp):
TTAAATTTAAAATAAATTTAAAAATAAAT
Found at i:9428005 original size:23 final size:22
Alignment explanation
Indices: 9427969--9428011 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
9427959 GTTTACAAAC
*
9427969 TCTCAAATTTTCTCTCTTTTCT
1 TCTCAAACTTTCTCTCTTTTCT
9427991 TCTCAACACTTTCTCTCTTTT
1 TCTCAA-ACTTTCTCTCTTTT
9428012 TTTCCTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.14, C:0.30, G:0.00, T:0.56
Consensus pattern (22 bp):
TCTCAAACTTTCTCTCTTTTCT
Found at i:9429792 original size:2 final size:2
Alignment explanation
Indices: 9429780--9429840 Score: 101
Period size: 2 Copynumber: 32.0 Consensus size: 2
9429770 ATCATTTGTC
9429780 AG AG A- AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
9429821 AG AG AG AG A- AG -G AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG
9429841 TCACGGGTTT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
1 3 0.05
2 53 0.95
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9433692 original size:15 final size:15
Alignment explanation
Indices: 9433674--9433719 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
9433664 TTATTATAAT
9433674 TTTAAAATTAAAAAA
1 TTTAAAATTAAAAAA
*
9433689 TTTAAAAATAAAAAA
1 TTTAAAATTAAAAAA
*
9433704 TAT-AAATTAATAAAA
1 TTTAAAATTAA-AAAA
9433719 T
1 T
9433720 AATATAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 6 0.22
15 21 0.78
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TTTAAAATTAAAAAA
Found at i:9433894 original size:29 final size:28
Alignment explanation
Indices: 9433862--9433956 Score: 90
Period size: 31 Copynumber: 3.4 Consensus size: 28
9433852 ATTAATTTTT
*
9433862 ATATTATAAAATTTTATATATTTTTCAAA
1 ATATTATAATATTTTATATATTTTT-AAA
*
9433891 ATATTATAGACTTTTTTATATATTTTT--A
1 ATATTATA-A-TATTTTATATATTTTTAAA
*
9433919 ATAGTAT-ATATTTTATATATTTTTTAAA
1 ATATTATAATATTTTATATA-TTTTTAAA
*
9433947 A-ATGATAATA
1 ATATTATAATA
9433957 ACAAATTAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
25 10 0.19
26 6 0.11
27 3 0.06
28 12 0.22
29 8 0.15
30 1 0.02
31 14 0.26
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (28 bp):
ATATTATAATATTTTATATATTTTTAAA
Found at i:9434158 original size:19 final size:19
Alignment explanation
Indices: 9434131--9434177 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
9434121 TATAATATAA
9434131 ACATATTTTAAAATAAATT
1 ACATATTTTAAAATAAATT
* *
9434150 ACATGTTTTGAAATAAATT
1 ACATATTTTAAAATAAATT
*
9434169 CCA-ATTTTA
1 ACATATTTTA
9434178 TTTCTTAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.43
Consensus pattern (19 bp):
ACATATTTTAAAATAAATT
Found at i:9437659 original size:22 final size:22
Alignment explanation
Indices: 9437612--9437658 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
9437602 TTTCAATTTC
*
9437612 TTTTAATTCTATTTTCTTTAAT
1 TTTTAAATCTATTTTCTTTAAT
*
9437634 TTTTAAATCTA-TTTCTTTTAT
1 TTTTAAATCTATTTTCTTTAAT
9437655 TTTT
1 TTTT
9437659 TCTTAGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTTAAATCTATTTTCTTTAAT
Found at i:9439366 original size:23 final size:23
Alignment explanation
Indices: 9439339--9439428 Score: 83
Period size: 23 Copynumber: 3.9 Consensus size: 23
9439329 ATGGTGTTCA
* *
9439339 CATAATACTACATGTAAGGTTTT
1 CATAATACAACATGTAAGGTTTG
* * *
9439362 CATAATAAAAAATGTAAGGTTCG
1 CATAATACAACATGTAAGGTTTG
** * *
9439385 CATGTTACTACATGTAGGGTTTG
1 CATAATACAACATGTAAGGTTTG
9439408 CATAATA-AATCATGTAAGGTT
1 CATAATACAA-CATGTAAGGTT
9439429 CACATGTCAA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
22 1 0.02
23 49 0.98
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (23 bp):
CATAATACAACATGTAAGGTTTG
Found at i:9439394 original size:46 final size:46
Alignment explanation
Indices: 9439334--9439435 Score: 141
Period size: 46 Copynumber: 2.2 Consensus size: 46
9439324 CGCATATGGT
** *
9439334 GTTCACATAATACTACATGTAAGGTTTTCATAATAAAAAATGTAAG
1 GTTCACATGTTACTACATGTAAGGTTTGCATAATAAAAAATGTAAG
* * **
9439380 GTTCGCATGTTACTACATGTAGGGTTTGCATAATAAATCATGTAAG
1 GTTCACATGTTACTACATGTAAGGTTTGCATAATAAAAAATGTAAG
9439426 GTTCACATGT
1 GTTCACATGT
9439436 CAAACAAACG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (46 bp):
GTTCACATGTTACTACATGTAAGGTTTGCATAATAAAAAATGTAAG
Found at i:9439497 original size:15 final size:15
Alignment explanation
Indices: 9439474--9439514 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
9439464 CTCTTAGGGT
*
9439474 TTCATATACAGGGGG
1 TTCACATACAGGGGG
*
9439489 TTCACATACATGGGG
1 TTCACATACAGGGGG
*
9439504 TTCACTTACAG
1 TTCACATACAG
9439515 ATTACCTTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (15 bp):
TTCACATACAGGGGG
Found at i:9444443 original size:45 final size:45
Alignment explanation
Indices: 9444394--9444490 Score: 158
Period size: 45 Copynumber: 2.2 Consensus size: 45
9444384 GTTCAAACTG
* *
9444394 ATGATATGGTAAATATTGTTTGATTAATTATGCTATATGATATGC
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
*
9444439 ATGATATGGTAAATATTATTTGATTTATTATGCTATACGATATGC
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
*
9444484 ATTATAT
1 ATGATAT
9444491 AGGTTTTGCT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.34, C:0.05, G:0.15, T:0.45
Consensus pattern (45 bp):
ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
Found at i:9445826 original size:27 final size:26
Alignment explanation
Indices: 9445795--9445858 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
9445785 TTTATCGAGA
* **
9445795 TTATTAGTTTATTGATAAATAAATATT
1 TTATTAATTTATCAATAAATAAATA-T
*
9445822 TTATTAATTTATCAATAAATTAATAT
1 TTATTAATTTATCAATAAATAAATAT
9445848 TTATTAATTTA
1 TTATTAATTTA
9445859 GAGAATATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 12 0.36
27 21 0.64
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (26 bp):
TTATTAATTTATCAATAAATAAATAT
Found at i:9446044 original size:35 final size:34
Alignment explanation
Indices: 9445968--9446048 Score: 85
Period size: 35 Copynumber: 2.4 Consensus size: 34
9445958 CATGTATCAA
* **
9445968 AGTTAATTGGTCCATGTAACAAAAAAAAAGGAGTT
1 AGTTAATTGGTTCATGTAACAAAAAAAAAAAAG-T
*
9446003 AATTAATTGGTTCATGTAACCAAAAAGAAAAAAAG-
1 AGTTAATTGGTTCATGTAA-CAAAAA-AAAAAAAGT
9446038 AGTTAA-TGGTT
1 AGTTAATTGGTT
9446049 TCAAAATCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
34 5 0.13
35 22 0.56
36 6 0.15
37 6 0.15
ACGTcount: A:0.47, C:0.07, G:0.19, T:0.27
Consensus pattern (34 bp):
AGTTAATTGGTTCATGTAACAAAAAAAAAAAAGT
Found at i:9448741 original size:45 final size:45
Alignment explanation
Indices: 9448683--9449130 Score: 450
Period size: 45 Copynumber: 10.2 Consensus size: 45
9448673 ATTCAAACTA
9448683 ATGATATGGTAAATATTATTTGATTGATTATGTTATACGATATGC
1 ATGATATGGTAAATATTATTTGATTGATTATGTTATACGATATGC
* * **
9448728 ATTATATGATAAATATTATTTGATTGATTATACTATACGATATGC
1 ATGATATGGTAAATATTATTTGATTGATTATGTTATACGATATGC
* * ** *
9448773 ATGATATGGTAAATATTATTTCATTTATTATGTGGT-TG--ATGC
1 ATGATATGGTAAATATTATTTGATTGATTATGTTATACGATATGC
** *** * * ** * *
9448815 TATGATATATTGCGTTTTCATGTGAAAGATTAT-TCAAAC--TA---
1 -ATGATATGGTAAATATT-ATTTGATTGATTATGTTATACGATATGC
*
9448856 ATGATATAGTAAATATTATTTGATTGATTATGTTATACGATATGC
1 ATGATATGGTAAATATTATTTGATTGATTATGTTATACGATATGC
* * ** *
9448901 ATTATATGATAAATATTATTTGATTGATTATACTATATGATATGC
1 ATGATATGGTAAATATTATTTGATTGATTATGTTATACGATATGC
* * * * * *
9448946 ATGATATGGTAAACATTATTTCATTTATTATGCTATATGATATGT
1 ATGATATGGTAAATATTATTTGATTGATTATGTTATACGATATGC
* * * *
9448991 ATGATATGGTAAATATTATTTGATTAATTATGTTCTATGATAAGC
1 ATGATATGGTAAATATTATTTGATTGATTATGTTATACGATATGC
* *
9449036 ATGATATGATAAATATTATTTGATTGATTATGCTATACG--ATGC
1 ATGATATGGTAAATATTATTTGATTGATTATGTTATACGATATGC
*
9449079 ATGATATGGTAAATATTATTTGATTGATTATGCTATACGATATGC
1 ATGATATGGTAAATATTATTTGATTGATTATGTTATACGATATGC
9449124 ATGATAT
1 ATGATAT
9449131 ACGTTTCGCT
Statistics
Matches: 326, Mismatches: 65, Indels: 24
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.03
40 16 0.05
42 6 0.02
43 53 0.16
44 11 0.03
45 229 0.70
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (45 bp):
ATGATATGGTAAATATTATTTGATTGATTATGTTATACGATATGC
Found at i:9448873 original size:83 final size:83
Alignment explanation
Indices: 9448630--9448888 Score: 247
Period size: 83 Copynumber: 3.0 Consensus size: 83
9448620 GGCTTAAAGG
* *
9448630 TGTGGTTGATGCTATAATATATTATGTTTTCATGTGAAAGATTATTCAAACTAATGATATGGTAA
1 TGTGGTTGATGCTATGATATATTAAGTTTTCATGTGAAAGATTATTCAAACTAATGATATGGTAA
9448695 ATATTATTTGATTGATTA
66 ATATTATTTGATTGATTA
* * * * * ** * *
9448713 TGT--TAT-ACGATATGCATTATATGATAAATATT-ATTTGATTGATTATACTATACGATATGCA
1 TGTGGT-TGATGCTATG-A-TATAT--TAAGTTTTCATGTGAAAGATTATTC-AAAC--TA---A
* *
9448774 TGATATGGTAAATATTATTTCATTTATTA
55 TGATATGGTAAATATTATTTGATTGATTA
** *
9448803 TGTGGTTGATGCTATGATATATTGCGTTTTCATGTGAAAGATTATTCAAACTAATGATATAGTAA
1 TGTGGTTGATGCTATGATATATTAAGTTTTCATGTGAAAGATTATTCAAACTAATGATATGGTAA
9448868 ATATTATTTGATTGATTA
66 ATATTATTTGATTGATTA
9448886 TGT
1 TGT
9448889 TATACGATAT
Statistics
Matches: 134, Mismatches: 27, Indels: 30
0.70 0.14 0.16
Matches are distributed among these distances:
81 6 0.04
82 2 0.01
83 38 0.28
84 12 0.09
85 8 0.06
86 2 0.01
87 2 0.01
88 7 0.05
89 12 0.09
90 36 0.27
91 2 0.01
92 7 0.05
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.45
Consensus pattern (83 bp):
TGTGGTTGATGCTATGATATATTAAGTTTTCATGTGAAAGATTATTCAAACTAATGATATGGTAA
ATATTATTTGATTGATTA
Found at i:9448919 original size:173 final size:173
Alignment explanation
Indices: 9448630--9449130 Score: 658
Period size: 173 Copynumber: 2.9 Consensus size: 173
9448620 GGCTTAAAGG
* * *
9448630 TGTGGTTGATGCTATAATATATTATGTTTTCATGTGAAAGATTATTCAAACTAATGATATGGTAA
1 TGTGGTTGATGCTATGATATATTAAGTTTTCATGTGAAAGATTATTCAAACTAATGATATAGTAA
9448695 ATATTATTTGATTGATTATGTTATACGATATGCATTATATGATAAATATTATTTGATTGATTATA
66 ATATTATTTGATTGATTATGTTATACGATATGCATTATATGATAAATATTATTTGATTGATTATA
*
9448760 CTATACGATATGCATGATATGGTAAATATTATTTCATTTATTA
131 CTATACGATATGCATGATATGGTAAACATTATTTCATTTATTA
**
9448803 TGTGGTTGATGCTATGATATATTGCGTTTTCATGTGAAAGATTATTCAAACTAATGATATAGTAA
1 TGTGGTTGATGCTATGATATATTAAGTTTTCATGTGAAAGATTATTCAAACTAATGATATAGTAA
9448868 ATATTATTTGATTGATTATGTTATACGATATGCATTATATGATAAATATTATTTGATTGATTATA
66 ATATTATTTGATTGATTATGTTATACGATATGCATTATATGATAAATATTATTTGATTGATTATA
*
9448933 CTATATGATATGCATGATATGGTAAACATTATTTCATTTATTA
131 CTATACGATATGCATGATATGGTAAACATTATTTCATTTATTA
* ** * * * * *
9448976 TGCT-ATATGATATG-TATGATATGGTAAATATT-ATTTGATTA-ATTATGTTCTATGA-TAA-G
1 TG-TGGT-TG--ATGCTATGATATATTAAGTTTTCATGTGA-AAGATTA--TTC-A-AACTAATG
* * *
9449035 CATGATATGATAAATATTATTTGATTGATTATGCTATACG--ATGCATGATATGGTAAATATTAT
57 -AT-ATA-G-TAAATATTATTTGATTGATTATGTTATACGATATGCATTATATGATAAATATTAT
*
9449098 TTGATTGATTATGCTATACGATATGCATGATAT
118 TTGATTGATTATACTATACGATATGCATGATAT
9449131 ACGTTTCGCT
Statistics
Matches: 294, Mismatches: 21, Indels: 21
0.88 0.06 0.06
Matches are distributed among these distances:
173 170 0.58
174 12 0.04
175 13 0.04
176 7 0.02
177 6 0.02
178 56 0.19
179 1 0.00
180 29 0.10
ACGTcount: A:0.34, C:0.06, G:0.15, T:0.44
Consensus pattern (173 bp):
TGTGGTTGATGCTATGATATATTAAGTTTTCATGTGAAAGATTATTCAAACTAATGATATAGTAA
ATATTATTTGATTGATTATGTTATACGATATGCATTATATGATAAATATTATTTGATTGATTATA
CTATACGATATGCATGATATGGTAAACATTATTTCATTTATTA
Found at i:9450415 original size:24 final size:24
Alignment explanation
Indices: 9450399--9450473 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
9450389 AGTTTGACTT
9450399 AAACAAATAAACAGAGTTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
*
9450423 AAACAAATAAACAAAGTTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
* *
9450447 AAACAATTAAACAGAATTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
9450471 AAA
1 AAA
9450474 GATTATTTCT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.57, C:0.08, G:0.09, T:0.25
Consensus pattern (24 bp):
AAACAAATAAACAGAGTTTAATTG
Found at i:9452446 original size:25 final size:25
Alignment explanation
Indices: 9452412--9452459 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
9452402 AGTTTGACTC
9452412 AAACAAATAAACAGAATTTAATTAA
1 AAACAAATAAACAGAATTTAATTAA
* *
9452437 AAACAAATAAATAGAGTTTAATT
1 AAACAAATAAACAGAATTTAATT
9452460 GAAACAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.27
Consensus pattern (25 bp):
AAACAAATAAACAGAATTTAATTAA
Found at i:9452535 original size:3 final size:3
Alignment explanation
Indices: 9452527--9452561 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
9452517 TAATTCAACA
9452527 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
9452562 CGCTTTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:9454660 original size:21 final size:20
Alignment explanation
Indices: 9454630--9454683 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
9454620 CATGGTTTTT
*
9454630 TAAATAATTATAAAAATATTA
1 TAAAAAATTATAAAAAT-TTA
* * *
9454651 TAGAATATTATTTAAAATTTA
1 TAAAAAATTA-TAAAAATTTA
9454672 TAAAAAATTATA
1 TAAAAAATTATA
9454684 TCTTTTTTTC
Statistics
Matches: 25, Mismatches: 7, Indels: 3
0.71 0.20 0.09
Matches are distributed among these distances:
20 1 0.04
21 18 0.72
22 6 0.24
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
TAAAAAATTATAAAAATTTA
Found at i:9456811 original size:14 final size:12
Alignment explanation
Indices: 9456779--9456826 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
9456769 TTTAAATGTT
*
9456779 TTAAAAAAAGAAT
1 TTAAAAAAA-AAA
9456792 TTAAAAGAAACAAA
1 TTAAAA-AAA-AAA
*
9456806 TTAAAACAAAAA
1 TTAAAAAAAAAA
9456818 TTAAAAAAA
1 TTAAAAAAA
9456827 GGCAAATGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
12 11 0.37
13 8 0.27
14 11 0.37
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (12 bp):
TTAAAAAAAAAA
Found at i:9458128 original size:37 final size:38
Alignment explanation
Indices: 9458024--9458117 Score: 181
Period size: 38 Copynumber: 2.5 Consensus size: 38
9458014 TATGTTGGGC
9458024 TTGTTGGGCTTAGGGTAATCTGGTTTGGGTATTTGAGT
1 TTGTTGGGCTTAGGGTAATCTGGTTTGGGTATTTGAGT
9458062 TTGTTGGGCTTAGGGTAATCTGGTTTGGGTATTTGAGT
1 TTGTTGGGCTTAGGGTAATCTGGTTTGGGTATTTGAGT
9458100 TTGTTGGGCTT-GGGTAAT
1 TTGTTGGGCTTAGGGTAAT
9458118 TTGTATTGGG
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 7 0.12
38 49 0.88
ACGTcount: A:0.13, C:0.05, G:0.37, T:0.45
Consensus pattern (38 bp):
TTGTTGGGCTTAGGGTAATCTGGTTTGGGTATTTGAGT
Found at i:9458838 original size:85 final size:85
Alignment explanation
Indices: 9458689--9458859 Score: 231
Period size: 85 Copynumber: 2.0 Consensus size: 85
9458679 TAACTTCATC
*
9458689 GATTTGGTCATCTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTGTTTTAATCCACTTCTC
1 GATTTGGTCATCTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTGTTTTAACCCACTTCTC
9458754 TATATCTCATCA-AGAAGATG
66 TATATCTCATCAGA-AAGATG
* * * * *
9458774 GATTTGGTC-TACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATT-TCTTTGACCCAGTTC
1 GATTTGGTCAT-CTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTGT-TTTAACCCACTTC
*
9458837 TCTGTATCTCATCAGAAAGATG
64 TCTATATCTCATCAGAAAGATG
9458859 G
1 G
9458860 GGGTTTAAAG
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
84 2 0.03
85 73 0.96
86 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (85 bp):
GATTTGGTCATCTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTGTTTTAACCCACTTCTC
TATATCTCATCAGAAAGATG
Found at i:9458859 original size:209 final size:208
Alignment explanation
Indices: 9458473--9459375 Score: 1265
Period size: 209 Copynumber: 4.3 Consensus size: 208
9458463 TCAAGCTTTG
* * *
9458473 CTTCATTGATTTAGTCTACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTGTTTTAATCC
1 CTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATCC
* * * *
9458538 ACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTTCACTTCTTTGCATCTCGTTAGGAAGATTA
66 ACTTCTCTATATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTGCATCTCGTCAGGAAGATGA
*
9458603 CCACTTTATTGCTTCGACCCACTTCTCTGTATCTCATCCGGAAGATGGAGGTTTGAAGTTTCACT
131 CCACTTTATTGCTTCGACCCACTTCTCTGTATCTCATCAGGAAGATGG-GGTTTGAAGTTTCACT
* *
9458668 CACATTGAACTTAA
195 CACATTGAGCTTCA
* *
9458682 CTTCATCGATTTGGTC-ATCTTCTCTGTATCTCATCAAGAAGATGACCGCTTCATTGTTTTAATC
1 CTTCATTGATTTGGTCTA-CTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATC
* * * *
9458746 CACTTCTCTATATCTCATCAAGAAGATGGATTTGG-TCTACTTCTCTGTATCTCATCAGGAAGAT
65 CACTTCTCTATATCTCATCAGGAAGACGGATTTGGTTC-ACTTCTCTGCATCTCGTCAGGAAGAT
* * * * * *
9458810 GACCTCTTTATTTCTTTGACCCAGTTCTCTGTATCTCATCAGAAAGATGGGGGTTTAAAGTTTCA
129 GACCACTTTATTGCTTCGACCCACTTCTCTGTATCTCATCAGGAAGAT-GGGGTTTGAAGTTTCA
*
9458875 CTCATATTGAGCTTCA
193 CTCACATTGAGCTTCA
* * * *
9458891 CTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTATTTTAATTC
1 CTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATCC
* * * * *
9458956 ACTTCTTTGTATCTCATCAGGAAGACGAATTTGGTTTACTTCTCTGCATCTCGTCAGGAAGATTA
66 ACTTCTCTATATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTGCATCTCGTCAGGAAGATGA
9459021 CCACTTTATTGCTTCGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTC
131 CCACTTTATTGCTTCGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTC
* *
9459086 TCATTGAGCTT-G
196 ACATTGAGCTTCA
* * *
9459098 CTTCATTGAATTGGTCTACTTCTCTGTATCTTATCAGGAAGATAGACCGCTTCATTGTTTTGATC
1 CTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGAT-GACCGCTTCATTGTTTTAATC
* * *
9459163 CACTTCTTTATATCTTATCAGGAAGACGGATTTGGTTCACTTCTCTGCATCTCGTTAGGAAGATG
65 CACTTCTCTATATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTGCATCTCGTCAGGAAGATG
*
9459228 ACCACTTTATTGCTTCGACCCACTTCTCCGTATCTCATCAGGAAGATGGGGTTTGAAGTTTTCAC
130 ACCACTTTATTGCTTCGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAG-TTTCAC
*
9459293 TCACATTGAGCTTCG
194 TCACATTGAGCTTCA
* ** * * * * *
9459308 CTTCATTGAATTATTTTACTTCTCTGTATCTCATCAGGAAGGTAGACTGCTTCTTTG-TTTGATC
1 CTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGAT-GACCGCTTCATTGTTTTAATC
9459372 CACT
65 CACT
9459376 GTAACTTCGA
Statistics
Matches: 619, Mismatches: 67, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
207 40 0.06
208 163 0.26
209 361 0.58
210 55 0.09
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.38
Consensus pattern (208 bp):
CTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATCC
ACTTCTCTATATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTGCATCTCGTCAGGAAGATGA
CCACTTTATTGCTTCGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTC
ACATTGAGCTTCA
Found at i:9459610 original size:50 final size:50
Alignment explanation
Indices: 9459516--9459977 Score: 328
Period size: 50 Copynumber: 9.3 Consensus size: 50
9459506 GCCTTAATTC
* * *
9459516 TTCCCATCACGTCTTCTAAGG-A-TCGGGTTCGTCGTTGCGGCCTCAACCT
1 TTCCCATCACATCTTCTAAGGTACT-GGGTTCGCCGTTGCAGCCTCAACCT
* *
9459565 TTCCCATCGCATCTTCTAAGGTACTGGGTTCACCGTTGCAGCCTCAACCT
1 TTCCCATCACATCTTCTAAGGTACTGGGTTCGCCGTTGCAGCCTCAACCT
* * * * * *
9459615 TTCCCTTCAAATCTTC-ATGGTACTGGGTTCACCTTTGCAGACTCAACCT
1 TTCCCATCACATCTTCTAAGGTACTGGGTTCGCCGTTGCAGCCTCAACCT
* *** * *** ***
9459664 TTCCCATCACGTCTTCTAAGGTACCAAGTTTGTTATTATGGCCTCAACCT
1 TTCCCATCACATCTTCTAAGGTACTGGGTTCGCCGTTGCAGCCTCAACCT
* * * ** *
9459714 TTCCCTTCAAATCTTC-ATGGTA-TCGGGTTCGTTGTTAC-GACCTCAACCT
1 TTCCCATCACATCTTCTAAGGTACT-GGGTTCGCCGTTGCAG-CCTCAACCT
** * * * *
9459763 TTCCCATTGCATCTTCTAAGGTACCGGGTTCGCCATTGCAACCTGAACCT
1 TTCCCATCACATCTTCTAAGGTACTGGGTTCGCCGTTGCAGCCTCAACCT
* * * * *
9459813 TTCCTATCACGTCTTCTAAGGTA-TCGGGTTTGCCATTGCAGCCTGAACCT
1 TTCCCATCACATCTTCTAAGGTACT-GGGTTCGCCGTTGCAGCCTCAACCT
*** * * * * * ** *
9459863 TTCTTTTTAAATTTTC-ATGGTATTGGGTTTACCGTTGCGGCCTCAACCT
1 TTCCCATCACATCTTCTAAGGTACTGGGTTCGCCGTTGCAGCCTCAACCT
** * *
9459912 TTCCCATCATGTCTTCTAAGGTACTGGGTTCGCTGTTACAGCCTCAACCT
1 TTCCCATCACATCTTCTAAGGTACTGGGTTCGCCGTTGCAGCCTCAACCT
* *
9459962 TTCCCTTCAAATCTTC
1 TTCCCATCACATCTTC
9459978 ATGTTTCCTT
Statistics
Matches: 318, Mismatches: 84, Indels: 21
0.75 0.20 0.05
Matches are distributed among these distances:
48 1 0.00
49 132 0.42
50 184 0.58
51 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (50 bp):
TTCCCATCACATCTTCTAAGGTACTGGGTTCGCCGTTGCAGCCTCAACCT
Done.