Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 41 of 135
Found at i:10585381 original size:6 final size:6
Alignment explanation
Indices: 10585370--10585410 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
10585360 TAGTATATTT
* * *
10585370 ATTTTC ATTTTC ATTTTC ATTTTT ATTTTT ATTTTT ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
10585411 ATTATGCATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (6 bp):
ATTTTC
Found at i:10585387 original size:12 final size:12
Alignment explanation
Indices: 10585367--10585410 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
10585357 AAATAGTATA
10585367 TTTATTTTCATT
1 TTTATTTTCATT
*
10585379 TTCATTTTCATT
1 TTTATTTTCATT
*
10585391 TTTATTTTTATT
1 TTTATTTTCATT
10585403 TTTATTTT
1 TTTATTTT
10585411 ATTATGCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTATTTTCATT
Found at i:10586304 original size:16 final size:16
Alignment explanation
Indices: 10586283--10586322 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
10586273 TATTATTATT
10586283 AGAAAAAAAAAAAAAA
1 AGAAAAAAAAAAAAAA
***
10586299 AGAAAAAAATTGAAAA
1 AGAAAAAAAAAAAAAA
10586315 AGAAAAAA
1 AGAAAAAA
10586323 TTGGAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (16 bp):
AGAAAAAAAAAAAAAA
Found at i:10586314 original size:17 final size:18
Alignment explanation
Indices: 10586294--10586335 Score: 63
Period size: 15 Copynumber: 2.5 Consensus size: 18
10586284 GAAAAAAAAA
10586294 AAAAAAGAAAAAAATT-G
1 AAAAAAGAAAAAAATTGG
10586311 -AAAAAG-AAAAAATTGG
1 AAAAAAGAAAAAAATTGG
10586327 AAAAAAGAA
1 AAAAAAGAA
10586336 GAAGAAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 8 0.36
16 7 0.32
17 6 0.27
18 1 0.05
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (18 bp):
AAAAAAGAAAAAAATTGG
Found at i:10586323 original size:15 final size:17
Alignment explanation
Indices: 10586295--10586331 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
10586285 AAAAAAAAAA
10586295 AAAAAGAAAAAAATT-G
1 AAAAAGAAAAAAATTGG
10586311 AAAAAG-AAAAAATTGG
1 AAAAAGAAAAAAATTGG
10586327 AAAAA
1 AAAAA
10586332 AGAAGAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.11
Consensus pattern (17 bp):
AAAAAGAAAAAAATTGG
Found at i:10586421 original size:16 final size:16
Alignment explanation
Indices: 10586400--10586435 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
10586390 GAAAAGCTCA
10586400 TGTTTATTATTATTCG
1 TGTTTATTATTATTCG
10586416 TGTTTATTATTATTCG
1 TGTTTATTATTATTCG
10586432 TGTT
1 TGTT
10586436 GAAAAGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (16 bp):
TGTTTATTATTATTCG
Found at i:10587089 original size:25 final size:23
Alignment explanation
Indices: 10587048--10587094 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
10587038 CCAATTAGGG
10587048 AATTATTGTTTAGATTTAATTTT
1 AATTATTGTTTAGATTTAATTTT
*
10587071 AATTATCTTTTTAGAATTTAATTT
1 AATTAT-TGTTTAG-ATTTAATTT
10587095 GGATCTAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (23 bp):
AATTATTGTTTAGATTTAATTTT
Found at i:10593861 original size:59 final size:60
Alignment explanation
Indices: 10593681--10593976 Score: 275
Period size: 60 Copynumber: 5.0 Consensus size: 60
10593671 AAAAAAAAAA
* * * *
10593681 TTGGTATTGGCCATTG-CATGGCCGACACCTTCTTTTTTATCTGAGAGAAAAAA---AAA--AT
1 TTGGTGTTGGCCA-TGCCATGGCCGACACC--CCTTTTTATCTGA-ATAAAAAATTTAAATTTT
* * * * **
10593739 TTGGTGTTGGCTATGCCATGGCCTACGCCTCCTTTTGATAAG-ATAAAAAATTTAAATTTT
1 TTGGTGTTGGCCATGCCATGGCCGACACC-CCTTTTTATCTGAATAAAAAATTTAAATTTT
* * *
10593799 TTGGTGTTGGCCATGCCATGACAGACACCCCTTTTTATCTG-ATAAAAAATTTTAATTTT
1 TTGGTGTTGGCCATGCCATGGCCGACACCCCTTTTTATCTGAATAAAAAATTTAAATTTT
* * * * *
10593858 TTGGTGTTGGCCATACCACGGCCGACACCCCTTTTTATCTGAATAAAAAAATCAAAATTT
1 TTGGTGTTGGCCATGCCATGGCCGACACCCCTTTTTATCTGAATAAAAAATTTAAATTTT
* * * * * *
10593918 TGGGTGTTGGTCATGCTATGGCTGACACCCCTTTTTATCTGAATAAAAAAATCAAATTT
1 TTGGTGTTGGCCATGCCATGGCCGACACCCCTTTTTATCTGAATAAAAAATTTAAATTT
10593977 GTGGGTGCCG
Statistics
Matches: 197, Mismatches: 34, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
55 7 0.04
57 11 0.06
58 25 0.13
59 63 0.32
60 91 0.46
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (60 bp):
TTGGTGTTGGCCATGCCATGGCCGACACCCCTTTTTATCTGAATAAAAAATTTAAATTTT
Found at i:10597704 original size:19 final size:20
Alignment explanation
Indices: 10597662--10597712 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
10597652 ACTTTTTACA
*
10597662 TTTTCTAATTTTTTATAATAT
1 TTTTCT-ATTTTTGATAATAT
*
10597683 TTTTCTATTTTTGA-AATGT
1 TTTTCTATTTTTGATAATAT
*
10597702 TTTTATATTTT
1 TTTTCTATTTT
10597713 CGAATTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 14 0.52
20 7 0.26
21 6 0.22
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.69
Consensus pattern (20 bp):
TTTTCTATTTTTGATAATAT
Found at i:10598372 original size:12 final size:12
Alignment explanation
Indices: 10598354--10598422 Score: 66
Period size: 12 Copynumber: 5.8 Consensus size: 12
10598344 GTTTAGATTC
10598354 CGAGCCCGAGGA
1 CGAGCCCGAGGA
* * *
10598366 TGAGCCCAATGA
1 CGAGCCCGAGGA
* *
10598378 CGAGCTCGAGTA
1 CGAGCCCGAGGA
*
10598390 CGAGCCCGCGGA
1 CGAGCCCGAGGA
* *
10598402 CGACCCCGCGGA
1 CGAGCCCGAGGA
10598414 CGAGCCCGA
1 CGAGCCCGA
10598423 TTATCAGACC
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
12 43 1.00
ACGTcount: A:0.23, C:0.36, G:0.35, T:0.06
Consensus pattern (12 bp):
CGAGCCCGAGGA
Found at i:10598956 original size:30 final size:30
Alignment explanation
Indices: 10598922--10599030 Score: 123
Period size: 30 Copynumber: 3.6 Consensus size: 30
10598912 CGTTTACTTC
*
10598922 TTAAATTTAATTTGTAATTTCATTATTATT
1 TTAAATTTAATTTCTAATTTCATTATTATT
* * *
10598952 TTAAATTTAATTTTTAGTTTCCTGTA-TATT
1 TTAAATTTAATTTCTAATTTCAT-TATTATT
* *
10598982 TTAATTTTAATTTCTAATTTCGTT-TATATT
1 TTAAATTTAATTTCTAATTTCATTAT-TATT
*
10599012 TTAAATTTCATTTCTAATT
1 TTAAATTTAATTTCTAATT
10599031 ATTATTTTTG
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
29 1 0.01
30 64 0.96
31 2 0.03
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (30 bp):
TTAAATTTAATTTCTAATTTCATTATTATT
Found at i:10600095 original size:60 final size:59
Alignment explanation
Indices: 10600003--10600126 Score: 169
Period size: 60 Copynumber: 2.1 Consensus size: 59
10599993 GAGCTGTTGG
* * * *
10600003 CCAAAAAATTAGATTTTTTATTAGATAAAAAGGAGGTGTCGGCTATGGCATGGCCAACA
1 CCAAAAAATTAGATTTTTTATTAGACAAAAAGGAGGTGTCGACCATGACATGGCCAACA
* *
10600062 CCAAAAAATTTGAATTTTTTATCT-GACAAAAAGGGGGTGTCGACCATGACATGGCCAACA
1 CCAAAAAATTAG-ATTTTTTAT-TAGACAAAAAGGAGGTGTCGACCATGACATGGCCAACA
10600122 CCAAA
1 CCAAA
10600127 TTTTTTTTGT
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 11 0.19
60 45 0.79
61 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (59 bp):
CCAAAAAATTAGATTTTTTATTAGACAAAAAGGAGGTGTCGACCATGACATGGCCAACA
Found at i:10603729 original size:31 final size:31
Alignment explanation
Indices: 10603694--10603758 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
10603684 ATTTGATGAA
* * *
10603694 AATCACATATAT-TAACTTTCGATTTTGGTTC
1 AATCACATACATGAAACTTT-GATTTTGATTC
*
10603725 AATCATATACATGAAACTTTGATTTTGATTC
1 AATCACATACATGAAACTTTGATTTTGATTC
10603756 AAT
1 AAT
10603759 TGTACATATC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 23 0.79
32 6 0.21
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (31 bp):
AATCACATACATGAAACTTTGATTTTGATTC
Found at i:10606500 original size:2 final size:2
Alignment explanation
Indices: 10606493--10606519 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10606483 GTACCTTGGG
10606493 GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT G
10606520 GTGGGTATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Found at i:10616840 original size:17 final size:18
Alignment explanation
Indices: 10616802--10616841 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
10616792 ACGAAATTAG
*
10616802 AATTGAATTGAAAAAATT
1 AATTTAATTGAAAAAATT
10616820 -ATTTAATTG-AAAAATT
1 AATTTAATTGAAAAAATT
10616836 AATTTA
1 AATTTA
10616842 GTTAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (18 bp):
AATTTAATTGAAAAAATT
Found at i:10620152 original size:38 final size:38
Alignment explanation
Indices: 10620102--10620248 Score: 125
Period size: 38 Copynumber: 3.8 Consensus size: 38
10620092 AATGTTGATT
* * *
10620102 TTAT-CTATATGCTTGCTAAAGCGAGCGAATTTACTGA
1 TTATACTAAATGCTTGCTAAAGCGAGCAAATCTACTGA
* * * *
10620139 TTATACTAAATGCTTGTTCAAAACGAGCAAAACCACTGA
1 TTATACTAAATGCTTGCT-AAAGCGAGCAAATCTACTGA
* * * * *
10620178 TTTTACTGAATGCTTACTCAAGCAAGCAAATCTACTGA
1 TTATACTAAATGCTTGCTAAAGCGAGCAAATCTACTGA
* * * *
10620216 TTATACTGAGTGCTTGATCAAAACGAGCAAATC
1 TTATACTAAATGCTTGCT-AAAGCGAGCAAATC
10620249 CACTAATTTT
Statistics
Matches: 84, Mismatches: 23, Indels: 4
0.76 0.21 0.04
Matches are distributed among these distances:
37 4 0.05
38 40 0.48
39 40 0.48
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (38 bp):
TTATACTAAATGCTTGCTAAAGCGAGCAAATCTACTGA
Found at i:10620217 original size:77 final size:77
Alignment explanation
Indices: 10620097--10620274 Score: 225
Period size: 77 Copynumber: 2.3 Consensus size: 77
10620087 AGTGGAATGT
* * * * *
10620097 TGATTTTATCT-ATATGCTTGCTAAAGCGAGCGAATTTACTGATTATACTAAATGCTTGTTCAAA
1 TGATTTTA-CTGA-ATGCTTGCTCAAGCAAGCAAATCTACTGATTATACTAAATGCTTGATCAAA
10620161 ACGAGCAAAACCAC
64 ACGAGCAAAACCAC
* * *
10620175 TGATTTTACTGAATGCTTACTCAAGCAAGCAAATCTACTGATTATACTGAGTGCTTGATCAAAAC
1 TGATTTTACTGAATGCTTGCTCAAGCAAGCAAATCTACTGATTATACTAAATGCTTGATCAAAAC
*
10620240 GAGCAAATCCAC
66 GAGCAAAACCAC
* *
10620252 TAATTTTAATGAATG-TTGCTCAA
1 TGATTTTACTGAATGCTTGCTCAA
10620275 CGGGCGATAA
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
76 7 0.08
77 71 0.82
78 9 0.10
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (77 bp):
TGATTTTACTGAATGCTTGCTCAAGCAAGCAAATCTACTGATTATACTAAATGCTTGATCAAAAC
GAGCAAAACCAC
Found at i:10620340 original size:39 final size:38
Alignment explanation
Indices: 10620110--10620340 Score: 182
Period size: 39 Copynumber: 6.0 Consensus size: 38
10620100 TTTTATCTAT
* ** *
10620110 ATGCTTGCT-AAAGCGAGCGAATTTACTGATTATACTAA
1 ATGCTTGCTCAAA-CGAGCAAATCCACTGATTATACTGA
* * *
10620148 ATGCTTGTTCAAAACGAGCAAAACCACTGATTTTACTGA
1 ATGCTTGCTC-AAACGAGCAAATCCACTGATTATACTGA
* * * *
10620187 ATGCTTACTCAAGCAAGCAAATCTACTGATTATACTGA
1 ATGCTTGCTCAAACGAGCAAATCCACTGATTATACTGA
* * * * *
10620225 GTGCTTGATCAAAACGAGCAAATCCACTAATTTTAATGA
1 ATGCTTGCTC-AAACGAGCAAATCCACTGATTATACTGA
* * *
10620264 ATG-TTGCTC-AACGGGCGATAA-CTACTGATCATACTGA
1 ATGCTTGCTCAAACGAGC-A-AATCCACTGATTATACTGA
* * *
10620301 ATGTTTGCTCAAACGAGCATTATCCACTAATTATACTGA
1 ATGCTTGCTCAAACGAGCA-AATCCACTGATTATACTGA
10620340 A
1 A
10620341 AAAGATTTTC
Statistics
Matches: 149, Mismatches: 36, Indels: 15
0.75 0.18 0.08
Matches are distributed among these distances:
36 6 0.04
37 15 0.10
38 54 0.36
39 71 0.48
40 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (38 bp):
ATGCTTGCTCAAACGAGCAAATCCACTGATTATACTGA
Found at i:10621432 original size:6 final size:6
Alignment explanation
Indices: 10621421--10621464 Score: 63
Period size: 6 Copynumber: 7.3 Consensus size: 6
10621411 GATTAAAAGG
*
10621421 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAAA AATAAA A-TAAA AT
1 ATTAAA ATTAAA ATTAAA ATTAAA ATT-AAA ATTAAA ATTAAA AT
10621465 AAAGACTTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
5 5 0.14
6 25 0.71
7 5 0.14
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
ATTAAA
Found at i:10622801 original size:20 final size:22
Alignment explanation
Indices: 10622776--10622820 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
10622766 GGGCTTGTAG
10622776 TGGGTA-ATTGGGTTT-TAATT
1 TGGGTATATTGGGTTTGTAATT
*
10622796 TGGGTATTTTGGGTTTGTAATT
1 TGGGTATATTGGGTTTGTAATT
10622818 TGG
1 TGG
10622821 ACATTGGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 8 0.36
22 8 0.36
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (22 bp):
TGGGTATATTGGGTTTGTAATT
Found at i:10624604 original size:6 final size:6
Alignment explanation
Indices: 10624593--10624686 Score: 125
Period size: 6 Copynumber: 15.7 Consensus size: 6
10624583 CTTTCTGGTG
* * *
10624593 CTCCCT CTCCCT CTCCCT CTTCCG CTCCTT CTCCCT CTCCCT CTCCCT
1 CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT
* * * *
10624641 CTCCCT CTCCCT CTCCCT CTGCCT CTGCCT CTGCCT CTGCCT CTCC
1 CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCC
10624687 TTCCGGCGCA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 80 1.00
ACGTcount: A:0.00, C:0.61, G:0.05, T:0.34
Consensus pattern (6 bp):
CTCCCT
Found at i:10625784 original size:21 final size:20
Alignment explanation
Indices: 10625758--10625800 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
10625748 ATTTTTTTAA
10625758 TTTTTAA-AATATATATTATAT
1 TTTTTAATAA-ATATA-TATAT
10625779 TTTTTAATAAATATATATAT
1 TTTTTAATAAATATATATAT
10625799 TT
1 TT
10625801 ATTGAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 12 0.57
22 2 0.10
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTTTAATAAATATATATAT
Found at i:10628095 original size:15 final size:15
Alignment explanation
Indices: 10628059--10628100 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
10628049 TTTTAGAGTT
*
10628059 TAAAAATTTTAATTAA
1 TAAAAA-TTTATTTAA
*
10628075 T-TAAATTTATTTAA
1 TAAAAATTTATTTAA
10628089 TAAAAATTTATT
1 TAAAAATTTATT
10628101 CTCATCCCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 9 0.41
15 12 0.55
16 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAAAATTTATTTAA
Found at i:10631205 original size:114 final size:112
Alignment explanation
Indices: 10630943--10631236 Score: 331
Period size: 114 Copynumber: 2.6 Consensus size: 112
10630933 CGAGATTTTG
* * * * * *
10630943 AAAAAAAATTAATCGTGTTGGCCAATGCTTGACCGACACCACTTTTTTGATCAGATAAAAAAAAG
1 AAAAAAAATT-TTGGTGTTGGCCAATGCTTGGCCGACA-CACCTTTTTAATCAGATAAAAAAAAT
*
10631008 TTTTTTGGTATTGGCCATACATTGACCGACATCAACATTTTTATCAAAT
64 TTTTTTAGTATTGGCCATACATTGACCGACATCAACATTTTTATCAAAT
*
10631057 AAAAAAAA-TTTGGTGTTGGCCAATGCTTAGCCGACATCACCTTTTTAATCAGATAAAAAATAAT
1 AAAAAAAATTTTGGTGTTGGCCAATGCTTGGCCGACA-CACCTTTTTAATCAGATAAAAAA-AAT
* ** ** * * * * *
10631121 TTTTTTAGTGTTGGTTATGGATTGGCCGACA-CCACCTTTTTAATTAGAT
64 TTTTTTAGTATTGGCCATACATTGACCGACATCAACATTTTT-ATCAAAT
* * *
10631170 AAAAAAAATTTTGGTGTTGGTCAATGCTTGGCCGACACAATCTTTTTTATCAGATAAAAAAAATT
1 AAAAAAAATTTTGGTGTTGGCCAATGCTTGGCCGACAC-ACCTTTTTAATCAGATAAAAAAAATT
10631235 TT
65 TT
10631237 GGTTTTGGCC
Statistics
Matches: 153, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
112 52 0.34
113 47 0.31
114 54 0.35
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (112 bp):
AAAAAAAATTTTGGTGTTGGCCAATGCTTGGCCGACACACCTTTTTAATCAGATAAAAAAAATTT
TTTTAGTATTGGCCATACATTGACCGACATCAACATTTTTATCAAAT
Found at i:10631215 original size:55 final size:55
Alignment explanation
Indices: 10630943--10631511 Score: 463
Period size: 55 Copynumber: 10.1 Consensus size: 55
10630933 CGAGATTTTG
* *
10630943 AAAAAAAATTAATCGTGTTGGCCAATGCTTGACCGACACCA-CTTTTTTGATCAGAT
1 AAAAAAAATT-TTGGTGTTGGCCAATGCTTGACCGACACCACCTTTTTT-ATCAGAT
* * * * * *
10630999 AAAAAAAAGTTTTTTGGTATTGGCC-ATACATTGACCGACATCAACATTTTTATCAAAT
1 AAAAAAAA---TTTTGGTGTTGGCCAATGC-TTGACCGACACCACCTTTTTTATCAGAT
* *
10631057 AAAAAAAA-TTTGGTGTTGGCCAATGCTT-AGCCGACATCACCTTTTTAATCAGAT
1 AAAAAAAATTTTGGTGTTGGCCAATGCTTGA-CCGACACCACCTTTTTTATCAGAT
* ** * * * *
10631111 AAAAAATAATTTTTTTAGTGTTGG-TTATGGATTGGCCGACACCACCTTTTTAATTAGAT
1 AAAAAA-AA---TTTTGGTGTTGGCCAAT-GCTTGACCGACACCACCTTTTTTATCAGAT
* * * *
10631170 AAAAAAAATTTTGGTGTTGGTCAATGCTTGGCCGACACAATCTTTTTTATCAGAT
1 AAAAAAAATTTTGGTGTTGGCCAATGCTTGACCGACACCACCTTTTTTATCAGAT
* * * *
10631225 AAAAAAAATTTTGGTTTTGGCCAATGCTTGGCTGACACCACCTTTTTTATCAAAT
1 AAAAAAAATTTTGGTGTTGGCCAATGCTTGACCGACACCACCTTTTTTATCAGAT
* * * * * * * *
10631280 AAAAAAATAATTTTTTGTGTTTGTC-ATGCATTGACTGATATCAGCATTTTTTTATTAGAT
1 -AAAAAA-AA-TTTTGGTGTTGGCCAATGC-TTGACCGACACCA-C-CTTTTTTATCAGAT
* * * *
10631340 AAAAAAAAATTTGGTGTTGACCAATGCTTGACAGACACTACCTTTTTTATCAGAT
1 AAAAAAAATTTTGGTGTTGGCCAATGCTTGACCGACACCACCTTTTTTATCAGAT
**** * *
10631395 -AAATTTTTTTTGGTGTTGGCCAATACTTGACCAACACCACC-TTTTTATCAGAT
1 AAAAAAAATTTTGGTGTTGGCCAATGCTTGACCGACACCACCTTTTTTATCAGAT
* * * *
10631448 AAAAAAAGTTTTTTGGTGTT-GACAATTGCTTGGCCGACATCACCTTTTTTATCAGAT
1 AAAAAAA--ATTTTGGTGTTGGCCAA-TGCTTGACCGACACCACCTTTTTTATCAGAT
10631505 AAAAAAA
1 AAAAAAA
10631512 CAAATTTTTT
Statistics
Matches: 413, Mismatches: 73, Indels: 53
0.77 0.14 0.10
Matches are distributed among these distances:
53 13 0.03
54 74 0.18
55 106 0.26
56 42 0.10
57 46 0.11
58 65 0.16
59 56 0.14
60 11 0.03
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (55 bp):
AAAAAAAATTTTGGTGTTGGCCAATGCTTGACCGACACCACCTTTTTTATCAGAT
Found at i:10631271 original size:169 final size:164
Alignment explanation
Indices: 10630975--10631511 Score: 524
Period size: 169 Copynumber: 3.2 Consensus size: 164
10630965 CAATGCTTGA
* * *
10630975 CCGACACCA-CTTTTTTGATCAGATAAAAAAAAGTTTTTTGGTATTGGCCATACATTGACCGACA
1 CCGACACCACCTTTTTT-ATCAGATAAAAAAAA---TTTTGGTGTTGGCAATGC-TTGACCGACA
* * * *
10631039 TCAACATTTTTATCAAATAAAAAAAA-TTTGGTGTTGGCCAATGCTTAGCCGACATCACCTTTTT
61 -CAACTTTTTTATCAGATAAAAAAAATTTTGGTGTTGGCCAATGCTTGGCCGACACCACCTTTTT
*
10631103 AATCAGATAAAAAATAATTTTTTTAGTGTTGGTTATGGATTGG
125 -ATCAGATAAAAAATAA-TTTTTT-GTGTTGGTAATGGATTGG
* * *
10631146 CCGACACCACCTTTTTAATTAGATAAAAAAAATTTTGGTGTTGGTCAATGCTTGGCCGACACAAT
1 CCGACACCACCTTTTTTATCAGATAAAAAAAATTTTGGTGTTGG-CAATGCTTGACCGACACAA-
* *
10631211 CTTTTTTATCAGATAAAAAAAATTTTGGTTTTGGCCAATGCTTGGCTGACACCACCTTTTTTATC
64 CTTTTTTATCAGATAAAAAAAATTTTGGTGTTGGCCAATGCTTGGCCGACACCACC-TTTTTATC
* * * * *
10631276 AAATAAAAAAATAATTTTTTGTGTTTGTCATGCATTGA
128 AGAT-AAAAAATAATTTTTTGTGTTGGTAATGGATTGG
* * * * * * * *
10631314 CTGATATCAGCATTTTTTTATTAGATAAAAAAAAATTTGGTGTTGACCAATGCTTGACAGACACT
1 CCGACACCA-C-CTTTTTTATCAGATAAAAAAAATTTTGGTGTTG-GCAATGCTTGACCGACAC-
* **** * * *
10631379 ACCTTTTTTATCAGAT-AAATTTTTTTTGGTGTTGGCCAATACTTGACCAACACCACCTTTTTAT
62 AACTTTTTTATCAGATAAAAAAAATTTTGGTGTTGGCCAATGCTTGGCCGACACCACCTTTTTAT
* ** * *
10631443 CAGATAAAAAA-AGTTTTTTGGTGTTGACAATTGCTTGG
127 CAGATAAAAAATAATTTTTT-GTGTTGGTAATGGATTGG
*
10631481 CCGACATCACCTTTTTTATCAGATAAAAAAA
1 CCGACACCACCTTTTTTATCAGATAAAAAAA
10631512 CAAATTTTTT
Statistics
Matches: 305, Mismatches: 50, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
165 19 0.06
166 8 0.03
167 26 0.09
168 71 0.23
169 78 0.26
170 73 0.24
171 24 0.08
172 6 0.02
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (164 bp):
CCGACACCACCTTTTTTATCAGATAAAAAAAATTTTGGTGTTGGCAATGCTTGACCGACACAACT
TTTTTATCAGATAAAAAAAATTTTGGTGTTGGCCAATGCTTGGCCGACACCACCTTTTTATCAGA
TAAAAAATAATTTTTTGTGTTGGTAATGGATTGG
Found at i:10633326 original size:5 final size:5
Alignment explanation
Indices: 10633318--10633403 Score: 75
Period size: 5 Copynumber: 16.0 Consensus size: 5
10633308 TTAAACTTAC
*
10633318 AAATT AAATT TAATT AAATT CAAACTT AAATT AAATTT AAA-T AAATTT
1 AAATT AAATT AAATT AAATT -AAA-TT AAATT AAA-TT AAATT AAA-TT
* *
10633366 AAATTT AAATT AAATT AAAATTT AAAAT AAATT TAATT
1 AAA-TT AAATT AAATT -AAA-TT AAATT AAATT AAATT
10633404 TCAAAGTAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
4 4 0.06
5 34 0.49
6 27 0.39
7 4 0.06
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
AAATT
Found at i:10633351 original size:27 final size:27
Alignment explanation
Indices: 10633318--10633386 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
10633308 TTAAACTTAC
*
10633318 AAATTAAATTTAATTAAATTCAAACTT
1 AAATTAAATTTAAATAAATTCAAACTT
* *
10633345 AAATTAAATTTAAATAAATTTAAATTT
1 AAATTAAATTTAAATAAATTCAAACTT
*
10633372 AAATTAAATTAAAAT
1 AAATTAAATTTAAAT
10633387 TTAAAATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (27 bp):
AAATTAAATTTAAATAAATTCAAACTT
Found at i:10633359 original size:6 final size:6
Alignment explanation
Indices: 10633307--10633401 Score: 78
Period size: 6 Copynumber: 16.8 Consensus size: 6
10633297 CTTTGTTTAT
* * * *
10633307 TTTAAA CTTACAA ATTAAA TTT-AA -TTAAA TTCAAA CTTAAA -TTAAA
1 TTTAAA TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
10633353 TTTAAA --TAAA TTTAAA TTTAAA -TTAAA TTAAAA TTTAAA -ATAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
10633397 TTTAA
1 TTTAA
10633402 TTTCAAAGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 16
0.73 0.10 0.16
Matches are distributed among these distances:
4 6 0.08
5 18 0.25
6 42 0.59
7 5 0.07
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (6 bp):
TTTAAA
Found at i:10633386 original size:17 final size:16
Alignment explanation
Indices: 10633321--10633415 Score: 102
Period size: 17 Copynumber: 5.8 Consensus size: 16
10633311 AACTTACAAA
*
10633321 TTAAATTTAATTAAAT
1 TTAAATTAAATTAAAT
*
10633337 TCAAACTTAAATTAAAT
1 TTAAA-TTAAATTAAAT
10633354 TTAAA-TAAATTTAAAT
1 TTAAATTAAA-TTAAAT
10633370 TTAAATTAAATTAAAAT
1 TTAAATTAAATT-AAAT
* *
10633387 TTAAAATAAATTTAAT
1 TTAAATTAAATTAAAT
*
10633403 TTCAAAGTAAATT
1 TT-AAATTAAATT
10633416 CTAAAATGGT
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
15 4 0.06
16 22 0.32
17 42 0.62
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (16 bp):
TTAAATTAAATTAAAT
Found at i:10633414 original size:28 final size:29
Alignment explanation
Indices: 10633365--10633422 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
10633355 TAAATAAATT
*
10633365 TAAATTTAAATTAAATTAAAATT-TAAAA
1 TAAATTTAAATTAAAGTAAAATTCTAAAA
*
10633393 TAAATTTAATTTCAAAGT-AAATTCTAAAA
1 TAAATTTAAATT-AAAGTAAAATTCTAAAA
10633422 T
1 T
10633423 GGTTTGGGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (29 bp):
TAAATTTAAATTAAAGTAAAATTCTAAAA
Found at i:10633937 original size:37 final size:36
Alignment explanation
Indices: 10633813--10634016 Score: 140
Period size: 37 Copynumber: 5.4 Consensus size: 36
10633803 ATCTTGCTCT
*
10633813 TACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTC
1 TACTTCAATTTCAGAGAT-AAGACATGTTATCC-ACTC
* * * * * *
10633851 TACTTTAATTTCAAGAGGATAGGAAATGATTTTGCTCTTAC
1 TACTTCAATTTC-AGA-GATAAGACATG-TTATCCAC-T-C
* *
10633892 TTCTTCAATTTCAGAGATAAAGACGTGTTATCCACTC
1 TACTTCAATTTCAGAGAT-AAGACATGTTATCCACTC
** * * * *
10633929 TACTTCAATTTCAAGAGGATTGGAAATGATTTTGCTC-C
1 TACTTCAATTTC-AGA-GATAAGACATG-TTATCCACTC
* *
10633967 TACTTCAATTTCAGAGATAAAGACGTGTTATCCACTT
1 TACTTCAATTTCAGAGAT-AAGACATGTTATCCACTC
10634004 TACTTCAATTTCA
1 TACTTCAATTTCA
10634017 AGCAGACAGG
Statistics
Matches: 124, Mismatches: 31, Indels: 23
0.70 0.17 0.13
Matches are distributed among these distances:
36 8 0.06
37 32 0.26
38 32 0.26
39 25 0.20
40 16 0.13
41 11 0.09
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (36 bp):
TACTTCAATTTCAGAGATAAGACATGTTATCCACTC
Found at i:10634011 original size:75 final size:75
Alignment explanation
Indices: 10633775--10634018 Score: 373
Period size: 75 Copynumber: 3.2 Consensus size: 75
10633765 TCCAGCTCTA
* * * *
10633775 CTACTTC-ATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATGAAGACTT
1 CTACTTCAATTTCAAGAGGATAGGAAATGATTTTGCTCCTACTTCAATTTCAGAGATAAAGACGT
10633839 GTTATCCAACT
66 GTTATCC-ACT
* *
10633850 CTACTTTAATTTCAAGAGGATAGGAAATGATTTTGCTCTTACTTCTTCAATTTCAGAGATAAAGA
1 CTACTTCAATTTCAAGAGGATAGGAAATGATTTTGCTC---CTACTTCAATTTCAGAGATAAAGA
10633915 CGTGTTATCCACT
63 CGTGTTATCCACT
*
10633928 CTACTTCAATTTCAAGAGGATTGGAAATGATTTTGCTCCTACTTCAATTTCAGAGATAAAGACGT
1 CTACTTCAATTTCAAGAGGATAGGAAATGATTTTGCTCCTACTTCAATTTCAGAGATAAAGACGT
10633993 GTTATCCACT
66 GTTATCCACT
*
10634003 TTACTTCAATTTCAAG
1 CTACTTCAATTTCAAG
10634019 CAGACAGGAA
Statistics
Matches: 155, Mismatches: 10, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
75 57 0.37
76 29 0.19
78 39 0.25
79 30 0.19
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (75 bp):
CTACTTCAATTTCAAGAGGATAGGAAATGATTTTGCTCCTACTTCAATTTCAGAGATAAAGACGT
GTTATCCACT
Found at i:10645803 original size:5 final size:5
Alignment explanation
Indices: 10645795--10645848 Score: 72
Period size: 5 Copynumber: 10.0 Consensus size: 5
10645785 TTAAACTTAC
10645795 AAATT AAATTT AAATT AAATT CAAACTT AAATT AAATTT AAATT AAATT
1 AAATT AAA-TT AAATT AAATT -AAA-TT AAATT AAA-TT AAATT AAATT
10645844 AAATT
1 AAATT
10645849 TCAAAGTAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
5 27 0.60
6 16 0.36
7 2 0.04
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (5 bp):
AAATT
Found at i:10645811 original size:11 final size:11
Alignment explanation
Indices: 10645795--10645865 Score: 74
Period size: 11 Copynumber: 6.3 Consensus size: 11
10645785 TTAAACTTAC
10645795 AAATTAAATTT
1 AAATTAAATTT
*
10645806 AAATTAAATTC
1 AAATTAAATTT
10645817 AAACTTAAA-TT
1 AAA-TTAAATTT
10645828 AAATTTAAA-TT
1 AAA-TTAAATTT
10645839 AAATTAAATTT
1 AAATTAAATTT
*
10645850 CAAAGTAAATTCT
1 -AAATTAAATT-T
10645863 AAA
1 AAA
10645866 ATGGTTTGGG
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
10 5 0.10
11 29 0.56
12 17 0.33
13 1 0.02
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.38
Consensus pattern (11 bp):
AAATTAAATTT
Found at i:10645829 original size:28 final size:28
Alignment explanation
Indices: 10645785--10645865 Score: 110
Period size: 28 Copynumber: 2.8 Consensus size: 28
10645775 TTTGTTTATT
10645785 TTAAACTTACAAATTAAATTTAAATTAAA
1 TTAAACTT-CAAATTAAATTTAAATTAAA
10645814 TTCAAACTT-AAATTAAATTTAAATTAAA
1 TT-AAACTTCAAATTAAATTTAAATTAAA
* *
10645842 TTAAATTTCAAAGTAAATTCTAAA
1 TTAAACTTCAAATTAAATT-TAAA
10645866 ATGGTTTGGG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.11
28 30 0.64
29 6 0.13
30 6 0.13
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.38
Consensus pattern (28 bp):
TTAAACTTCAAATTAAATTTAAATTAAA
Found at i:10645860 original size:17 final size:17
Alignment explanation
Indices: 10645804--10645860 Score: 82
Period size: 17 Copynumber: 3.4 Consensus size: 17
10645794 CAAATTAAAT
10645804 TTAAATTAAA-TTCAAA
1 TTAAATTAAATTTCAAA
10645820 CTTAAATTAAATTT-AAA
1 -TTAAATTAAATTTCAAA
10645837 TTAAATTAAATTTCAAA
1 TTAAATTAAATTTCAAA
*
10645854 GTAAATT
1 TTAAATT
10645861 CTAAAATGGT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
16 13 0.35
17 22 0.59
18 2 0.05
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (17 bp):
TTAAATTAAATTTCAAA
Found at i:10645974 original size:30 final size:30
Alignment explanation
Indices: 10645938--10646030 Score: 150
Period size: 30 Copynumber: 3.1 Consensus size: 30
10645928 GAAAAATAAT
*
10645938 AATTAGAAATGAAATTTAAAATATAAACAA
1 AATTAGAAATTAAATTTAAAATATAAACAA
*
10645968 AATTAGAAATTAAATTTAAAATATAAACGA
1 AATTAGAAATTAAATTTAAAATATAAACAA
*
10645998 AATTACAAATTAAATTTAAAATATAAACGAA
1 AATTAGAAATTAAATTTAAAATATAAAC-AA
10646029 AA
1 AA
10646031 AATCAAAATT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 55 0.95
31 3 0.05
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.28
Consensus pattern (30 bp):
AATTAGAAATTAAATTTAAAATATAAACAA
Found at i:10646507 original size:12 final size:12
Alignment explanation
Indices: 10646487--10646533 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
10646477 CGCGGCCTCG
10646487 TACTCGGGCTCA
1 TACTCGGGCTCA
* *
10646499 TACTTGGGCTCG
1 TACTCGGGCTCA
*
10646511 TCCTCGGGCTCA
1 TACTCGGGCTCA
*
10646523 TCCTCGGGCTC
1 TACTCGGGCTC
10646534 GGAATCTGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.09, C:0.36, G:0.28, T:0.28
Consensus pattern (12 bp):
TACTCGGGCTCA
Found at i:10646510 original size:24 final size:24
Alignment explanation
Indices: 10646483--10646534 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
10646473 GATCCGCGGC
*
10646483 CTCGTACTCGGGCTCATACTTGGG
1 CTCGTACTCGGGCTCATACTCGGG
* *
10646507 CTCGTCCTCGGGCTCATCCTCGGG
1 CTCGTACTCGGGCTCATACTCGGG
10646531 CTCG
1 CTCG
10646535 GAATCTGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.08, C:0.37, G:0.29, T:0.27
Consensus pattern (24 bp):
CTCGTACTCGGGCTCATACTCGGG
Found at i:10647221 original size:22 final size:21
Alignment explanation
Indices: 10647196--10647238 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10647186 AAAAAATTTC
*
10647196 ATTTTAAAGATATAAAAAAATA
1 ATTTCAAA-ATATAAAAAAATA
* *
10647218 ATTTCGAAATGTAAAAAAATA
1 ATTTCAAAATATAAAAAAATA
10647239 TAAGATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.30
Consensus pattern (21 bp):
ATTTCAAAATATAAAAAAATA
Found at i:10647231 original size:127 final size:128
Alignment explanation
Indices: 10647082--10647347 Score: 493
Period size: 127 Copynumber: 2.1 Consensus size: 128
10647072 TTTATTTGTA
10647082 AAAAAAAT-ATTTCGAAAATGTAAAAAAATATAAGATTTTTAATTTGTAAAAAAATATTTAAAAA
1 AAAAAAATAATTTCGAAAATGTAAAAAAATATAAGATTTTTAATTTGTAAAAAAATATTTAAAAA
10647146 ATGTATTTTTTTAATATTTCAAAAATATAAAAGTATATGTAAAAAATTTCATTTTAAAGATAT
66 ATGTATTTTTTTAATATTTCAAAAATATAAAAGTATATGTAAAAAATTTCATTTTAAAGATAT
10647209 AAAAAAATAATTTCG-AAATGTAAAAAAATATAAGATTTTTAATTTGTAAAAAAATATTTAAAAA
1 AAAAAAATAATTTCGAAAATGTAAAAAAATATAAGATTTTTAATTTGTAAAAAAATATTTAAAAA
* *
10647273 ATTTATTTTTTTAATATTTCGAAAATATAAAAGTATATGTAAAAAATTTCATTTTAAAGATAT
66 ATGTATTTTTTTAATATTTCAAAAATATAAAAGTATATGTAAAAAATTTCATTTTAAAGATAT
10647336 -AAAAAATAATTT
1 AAAAAAATAATTT
10647348 TAAAAAAATT
Statistics
Matches: 136, Mismatches: 2, Indels: 3
0.96 0.01 0.02
Matches are distributed among these distances:
126 12 0.09
127 118 0.87
128 6 0.04
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (128 bp):
AAAAAAATAATTTCGAAAATGTAAAAAAATATAAGATTTTTAATTTGTAAAAAAATATTTAAAAA
ATGTATTTTTTTAATATTTCAAAAATATAAAAGTATATGTAAAAAATTTCATTTTAAAGATAT
Found at i:10647385 original size:96 final size:95
Alignment explanation
Indices: 10647279--10647472 Score: 300
Period size: 97 Copynumber: 2.0 Consensus size: 95
10647269 AAAAATTTAT
* * *
10647279 TTTTTTAATATTTCGAAAATAT-AAAAGTATATGTAAAAAATTTCATTTTAAAGATATAAAAAAT
1 TTTTTTAATATTTCAAAAATATAAAAAATATATGTAAAAAATTTCATTTCAAAGATATAAAAAAT
10647343 AATTTTAAAAAAATTCGAAAAGCTAAAAAATA
66 AATTTT--AAAAATTCGAAAAGCTAAAAAATA
* *
10647375 TTTTTTAATATTTCAAAAATATAAAAAATATATGTAAAAAATTTTATTTCGAAGATATAAAAAAT
1 TTTTTTAATATTTCAAAAATATAAAAAATATATGTAAAAAATTTCATTTCAAAGATATAAAAAAT
* *
10647440 AATTTTAAAAATTTGAAAAGTTAAAAAATA
66 AATTTTAAAAATTCGAAAAGCTAAAAAATA
10647470 TTT
1 TTT
10647473 CGAAAATATA
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
95 25 0.28
96 21 0.23
97 44 0.49
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.38
Consensus pattern (95 bp):
TTTTTTAATATTTCAAAAATATAAAAAATATATGTAAAAAATTTCATTTCAAAGATATAAAAAAT
AATTTTAAAAATTCGAAAAGCTAAAAAATA
Found at i:10647433 original size:36 final size:35
Alignment explanation
Indices: 10647383--10647453 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 35
10647373 TATTTTTTAA
10647383 TATTTCAAAAATATAAAAAATATATGTAAAAAATTT
1 TATTTCAAAAATATAAAAAATA-ATGTAAAAAATTT
* * * *
10647419 TATTTCGAAGATATAAAAAATAATTTTAAAAATTT
1 TATTTCAAAAATATAAAAAATAATGTAAAAAATTT
10647454 GAAAAGTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 11 0.35
36 20 0.65
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.38
Consensus pattern (35 bp):
TATTTCAAAAATATAAAAAATAATGTAAAAAATTT
Found at i:10647477 original size:20 final size:19
Alignment explanation
Indices: 10647446--10647490 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
10647436 AAATAATTTT
10647446 AAAA-ATTTGAAAAGT-TAA
1 AAAATATTTGAAAA-TATAA
10647464 AAAATATTTCGAAAATATAA
1 AAAATATTT-GAAAATATAA
10647484 AAAATAT
1 AAAATAT
10647491 ATGTACAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.17
19 5 0.21
20 15 0.62
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (19 bp):
AAAATATTTGAAAATATAA
Found at i:10647486 original size:28 final size:29
Alignment explanation
Indices: 10647432--10647486 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 29
10647422 TTCGAAGATA
* * *
10647432 TAAAAAATAATTTTAAAAATTTGAAAAGT
1 TAAAAAATAATTTCAAAAATATAAAAAGT
*
10647461 TAAAAAAT-ATTTCGAAAATATAAAAA
1 TAAAAAATAATTTCAAAAATATAAAAA
10647487 ATATATGTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 14 0.64
29 8 0.36
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (29 bp):
TAAAAAATAATTTCAAAAATATAAAAAGT
Found at i:10647556 original size:20 final size:20
Alignment explanation
Indices: 10647521--10647576 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
10647511 AATATTATTT
10647521 TAAAAAA-A-TTCAAAAATA
1 TAAAAAATATTTCAAAAATA
*
10647539 TAAAAAATATTTCGAAAATA
1 TAAAAAATATTTCAAAAATA
* * *
10647559 GAAAAACTATTTTAAAAA
1 TAAAAAATATTTCAAAAA
10647577 ATTCGAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
18 7 0.23
19 1 0.03
20 23 0.74
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.27
Consensus pattern (20 bp):
TAAAAAATATTTCAAAAATA
Found at i:10648960 original size:93 final size:93
Alignment explanation
Indices: 10648853--10649476 Score: 1079
Period size: 93 Copynumber: 6.7 Consensus size: 93
10648843 AATTAAGAGT
*
10648853 AATTTGGTAAATAATGTATTATCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
1 AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
*
10648918 TTTTTAATTTAAATAATTTTAAAATTTG
66 TTTTTAATTTAAATAATTTTAATATTTG
*
10648946 AATATGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
1 AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
* *
10649011 TTTTTAATTTAAATAATATTAATATTTA
66 TTTTTAATTTAAATAATTTTAATATTTG
*
10649039 AATTTGGTAAATAATATATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
1 AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
* *
10649104 TTTTTAACTTAAATAATATTAATATTTG
66 TTTTTAATTTAAATAATTTTAATATTTG
* *
10649132 AATTTGGTAAAT-ATATATTGTCAAGTCAACACATTATTTGATATAAATTGAAATATTATAATAA
1 AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
10649196 TTTTTAATTTAAATAATTTTAATATTTG
66 TTTTTAATTTAAATAATTTTAATATTTG
* *
10649224 AATTTGATAAATATTGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
1 AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
10649289 TTTTTAATTTAAATAATTTTAATATTTG
66 TTTTTAATTTAAATAATTTTAATATTTG
* *
10649317 AATTTGGTAAATAATGTATTGTCAAATCAATATATTATTTGATATAAATTGAAATATTATAATAA
1 AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
10649382 TTTTTAATTTAAATAATTTTAATATTTG
66 TTTTTAATTTAAATAATTTTAATATTTG
* * * *
10649410 AATTTGATAAATAATGTATTGTCAAATCAATACTTTAGTTGATATAAATTGAAATATTATAATAA
1 AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
10649475 TT
66 TT
10649477 AACACTTTCA
Statistics
Matches: 506, Mismatches: 24, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
92 88 0.17
93 418 0.83
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.45
Consensus pattern (93 bp):
AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
TTTTTAATTTAAATAATTTTAATATTTG
Found at i:10649376 original size:278 final size:279
Alignment explanation
Indices: 10648853--10649476 Score: 1079
Period size: 278 Copynumber: 2.2 Consensus size: 279
10648843 AATTAAGAGT
*
10648853 AATTTGGTAAATAATGTATTATCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
1 AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
*
10648918 TTTTTAATTTAAATAATTTTAAAATTTGAATATGGTAAATAATGTATTGTCAAATCAACACATTA
66 TTTTTAATTTAAATAATTTTAAAATTTGAATATGATAAATAATGTATTGTCAAATCAACACATTA
10648983 TTTGATATAAATTGAAATATTATAATAATTTTTAATTTAAATAATATTAATATTTAAATTTGGTA
131 TTTGATATAAATTGAAATATTATAATAATTTTTAATTTAAATAATATTAATATTTAAATTTGGTA
10649048 AATAATATATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAATTTTTAACT
196 AATAATATATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAATTTTTAACT
10649113 TAAATAATATTAATATTTG
261 TAAATAATATTAATATTTG
* *
10649132 AATTTGGTAAAT-ATATATTGTCAAGTCAACACATTATTTGATATAAATTGAAATATTATAATAA
1 AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
* * *
10649196 TTTTTAATTTAAATAATTTTAATATTTGAATTTGATAAATATTGTATTGTCAAATCAACACATTA
66 TTTTTAATTTAAATAATTTTAAAATTTGAATATGATAAATAATGTATTGTCAAATCAACACATTA
* *
10649261 TTTGATATAAATTGAAATATTATAATAATTTTTAATTTAAATAATTTTAATATTTGAATTTGGTA
131 TTTGATATAAATTGAAATATTATAATAATTTTTAATTTAAATAATATTAATATTTAAATTTGGTA
* * * *
10649326 AATAATGTATTGTCAAATCAATATATTATTTGATATAAATTGAAATATTATAATAATTTTTAATT
196 AATAATATATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAATTTTTAACT
*
10649391 TAAATAATTTTAATATTTG
261 TAAATAATATTAATATTTG
* * * *
10649410 AATTTGATAAATAATGTATTGTCAAATCAATACTTTAGTTGATATAAATTGAAATATTATAATAA
1 AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
10649475 TT
66 TT
10649477 AACACTTTCA
Statistics
Matches: 324, Mismatches: 20, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
278 263 0.81
279 61 0.19
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.45
Consensus pattern (279 bp):
AATTTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAA
TTTTTAATTTAAATAATTTTAAAATTTGAATATGATAAATAATGTATTGTCAAATCAACACATTA
TTTGATATAAATTGAAATATTATAATAATTTTTAATTTAAATAATATTAATATTTAAATTTGGTA
AATAATATATTGTCAAATCAACACATTATTTGATATAAATTGAAATATTATAATAATTTTTAACT
TAAATAATATTAATATTTG
Found at i:10649610 original size:19 final size:19
Alignment explanation
Indices: 10649586--10649622 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10649576 CATTTAATTT
*
10649586 TAATTTCAAATTTAAACTA
1 TAATTTCAAATTCAAACTA
*
10649605 TAATTTTAAATTCAAACT
1 TAATTTCAAATTCAAACT
10649623 TGTATAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (19 bp):
TAATTTCAAATTCAAACTA
Found at i:10649701 original size:17 final size:16
Alignment explanation
Indices: 10649675--10649709 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
10649665 AATTTTGAAA
*
10649675 TTAATTTCAACTTAAT
1 TTAATTTCAAATTAAT
10649691 TTAATTTTCAAATTAAT
1 TTAA-TTTCAAATTAAT
10649708 TT
1 TT
10649710 TTACACAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (16 bp):
TTAATTTCAAATTAAT
Found at i:10653727 original size:54 final size:54
Alignment explanation
Indices: 10653656--10654323 Score: 435
Period size: 54 Copynumber: 11.8 Consensus size: 54
10653646 GAAAGGAGAG
*
10653656 AAAGTTGGTGTC-AGCCAATGCA-TGGCCAACACTAAATTTTTTTTATCTGATAAA
1 AAAGGTGGTGTCGA-CCAA-GCATTGGCCAACACTAAATTTTTTTTATCTGATAAA
* ** *
10653710 AAAGGTGGTGTCGGCCAATGCA-TGTTCAACACAAAAAAAAAATTGTTTTTCTTATCTGATAAAA
1 AAAGGTGGTGTCGACCAA-GCATTGGCCAACAC------TAAA-T-TTTTT-TTATCTGAT-AAA
* * *
10653774 AAAGGTGGTGTC-AGCCAAGTATTGACCAACACAAAATTTTTTTTATCTGATAAA
1 AAAGGTGGTGTCGA-CCAAGCATTGGCCAACACTAAATTTTTTTTATCTGATAAA
* * * *
10653828 AAAGGTAGTGTCTACCAAGCATTGACCAACACTAAATTTTTTTTATATGATAAA
1 AAAGGTGGTGTCGACCAAGCATTGGCCAACACTAAATTTTTTTTATCTGATAAA
** * * *
10653882 AAAAATGGTCTCAACCAATGCA-TGACCAACACTAAAAAAATTATTTTTTTATCTGATAAAA
1 AAAGGTGGTGTCGACCAA-GCATTGGCCAACACT----AAA-T-TTTTTTTATCTGAT-AAA
* * *
10653943 AAATGTTGGTGTCAACCAATGCA-TGGCCAACA-TAAAAAAAAATTATTTTTTTATTTGAT-AA
1 AAA-GGTGGTGTCGACCAA-GCATTGGCCAACACT------AAA-T-TTTTTTTATCTGATAAA
* * * * *
10654004 AAAGGTGGTATCGACCAAGCATTGACCAACACCAAATTTTTTTTATTTGATGAA
1 AAAGGTGGTGTCGACCAAGCATTGGCCAACACTAAATTTTTTTTATCTGATAAA
* * * * *
10654058 AAAGGTAGTGTCGGCCAAGCATTGGCCAACAC--CATTTTTTTTATTTGATTAA
1 AAAGGTGGTGTCGACCAAGCATTGGCCAACACTAAATTTTTTTTATCTGATAAA
* * * * * *
10654110 AAAGGTGGTGTTGACCAATGCA-TGACCAACACCAAAAAAAATATTTTTATCTGATTAA
1 AAAGGTGGTGTCGACCAA-GCATTGGCCAACA-C---TAAATTTTTTTTATCTGATAAA
* * *
10654168 AAAGGTGGTGTCGGCCAAGCATTGGCCTACAC-CAATTTTTTTTATCTGATAAA
1 AAAGGTGGTGTCGACCAAGCATTGGCCAACACTAAATTTTTTTTATCTGATAAA
* ** * * * *
10654221 AAATGCTAATGTCGACCAATGCA-TGGCTAATACCAAAATTTGTTTTATCTGATAAA
1 AAA-GGTGGTGTCGACCAA-GCATTGGCCAACA-CTAAATTTTTTTTATCTGATAAA
* *
10654277 AAAGGTGGTGTCGGCCAAGCATTGGCCAACACCATTAATTTTTTTTA
1 AAAGGTGGTGTCGACCAAGCATTGGCCAACA-C-TAAATTTTTTTTA
10654324 AAAATCTCTT
Statistics
Matches: 503, Mismatches: 69, Indels: 82
0.77 0.11 0.13
Matches are distributed among these distances:
52 41 0.08
53 38 0.08
54 153 0.30
55 40 0.08
56 37 0.07
57 5 0.01
58 46 0.09
59 4 0.01
60 36 0.07
61 13 0.03
62 29 0.06
63 34 0.07
64 27 0.05
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (54 bp):
AAAGGTGGTGTCGACCAAGCATTGGCCAACACTAAATTTTTTTTATCTGATAAA
Found at i:10653811 original size:118 final size:114
Alignment explanation
Indices: 10653656--10654079 Score: 375
Period size: 118 Copynumber: 3.7 Consensus size: 114
10653646 GAAAGGAGAG
* * * *
10653656 AAAGTTGGTGTCAGCCAATGCATGGCCAACACTAAATTTTTTTTATCTGATAAAAAAGGTGGTGT
1 AAAGGTGGTGTCAGCCAATGCATGACCAACACAAAATTTTTTTTATCTGATAAAAAAGGTAGTGT
* *
10653721 CGGCCAATGCATGTTCAACACAAAAAAAAAATTGTTTTTCTTATCTGATAAAA
66 CGACCAA-GCATGTTCAACAC-AAAAAAAAATT-TTTTT-TTATATGATAAAA
*
10653774 AAAGGTGGTGTCAGCCAA-GTATTGACCAACACAAAATTTTTTTTATCTGATAAAAAAGGTAGTG
1 AAAGGTGGTGTCAGCCAATGCA-TGACCAACACAAAATTTTTTTTATCTGATAAAAAAGGTAGTG
* * * **
10653838 TCTACCAAGCA--TT-GAC-CAACACTAAA-TTTTTTTTATATGATAAAA
65 TCGACCAAGCATGTTCAACACAAAAAAAAATTTTTTTTTATATGATAAAA
* * *
10653883 AAA-ATGGTCTCAACCAATGCATGACCAACACTAAAAAAATTATTTTTTTATCTGATAAAAAAAT
1 AAAGGTGGTGTCAGCCAATGCATGACCAACAC----AAAA-T-TTTTTTTATCTGAT-AAAAAA-
* * * ** * *
10653947 GTTGGTGTCAACCAATGCATGGCCAACATAAAAAAAAATTATTTTTTTATTTGAT--AA
58 GGTAGTGTCGACCAA-GCATGTTCAACACAAAAAAAAATT-TTTTTTTATATGATAAAA
* * * *
10654004 AAAGGTGGTATC-GACCAA-GCATTGACCAACACCAAATTTTTTTTATTTGATGAAAAAGGTAGT
1 AAAGGTGGTGTCAG-CCAATGCA-TGACCAACACAAAATTTTTTTTATCTGATAAAAAAGGTAGT
*
10654067 GTCGGCCAAGCAT
64 GTCGACCAAGCAT
10654080 TGGCCAACAC
Statistics
Matches: 249, Mismatches: 37, Indels: 45
0.75 0.11 0.14
Matches are distributed among these distances:
108 21 0.08
109 17 0.07
110 5 0.02
111 1 0.00
112 10 0.04
113 6 0.02
114 27 0.11
115 13 0.05
116 25 0.10
117 9 0.04
118 65 0.26
120 2 0.01
121 14 0.06
122 21 0.08
123 13 0.05
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (114 bp):
AAAGGTGGTGTCAGCCAATGCATGACCAACACAAAATTTTTTTTATCTGATAAAAAAGGTAGTGT
CGACCAAGCATGTTCAACACAAAAAAAAATTTTTTTTTATATGATAAAA
Found at i:10654045 original size:176 final size:165
Alignment explanation
Indices: 10653755--10654223 Score: 447
Period size: 176 Copynumber: 2.8 Consensus size: 165
10653745 AAAAAAATTG
* * *
10653755 TTTTTCTTATCTGATAAAAAAAGGTGGTGTCAGCCAA-GTATTGACCAACAC-----AAAAT-TT
1 TTTTTTTTATCTGAT-AAAAAAGGTGGTGTCAACCAATGCA-TGACCAACACAAAAAAAAATATT
* * *
10653813 TTTTTATCTGATAAAAAAGGTAGTGTCTACCAAGCATTGACCAACACTAAATTTTTTTTATATGA
64 TTTTTATCTGAT-AAAAAGGTGGTGTCGACCAAGCATTGACCAACACCAAATTTTTTTTATATGA
*
10653878 TAAAAAAAATGGTCTCAACCAATGCA-TGACCAACACTAAAAAAA
128 TAAAAAAAATAGTCTCAACCAA-GCATTGACCAACAC------AA
* * *
10653922 TTATTTTTTTATCTGATAAAAAAATGTTGGTGTCAACCAATGCATGGCCAACATAAAAAAAAATT
1 -T-TTTTTTTATCTGAT-AAAAAA-GGTGGTGTCAACCAATGCATGACCAACACAAAAAAAAA-T
* * *
10653987 ATTTTTTTATTTGATAAAAAGGTGGTATCGACCAAGCATTGACCAACACCAAATTTTTTTTATTT
61 ATTTTTTTATCTGATAAAAAGGTGGTGTCGACCAAGCATTGACCAACACCAAATTTTTTTTATAT
* ** * ** * *
10654052 GATGAAAAAGGTAGTGTCGGCCAAGCATTGGCCAACACCA
126 GATAAAAAAAATAGTCTCAACCAAGCATTGACCAACACAA
* * ** *
10654092 TTTTTTTTATTTGATTAAAAAGGTGGTGTTGACCAATGCATGACCAACACCAAAAAAAATA--TT
1 TTTTTTTTATCTGATAAAAAAGGTGGTGTCAACCAATGCATGACCAACACAAAAAAAAATATTTT
* * * *
10654155 TTTATCTGATTAAAAAGGTGGTGTCGGCCAAGCATTGGCCTACACC-AATTTTTTTTATCTGATA
66 TTTATCTGA-TAAAAAGGTGGTGTCGACCAAGCATTGACCAACACCAAATTTTTTTTATATGATA
10654219 AAAAA
130 AAAAA
10654224 TGCTAATGTC
Statistics
Matches: 253, Mismatches: 36, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
163 31 0.12
164 32 0.13
165 2 0.01
166 32 0.13
167 5 0.02
168 14 0.06
169 21 0.08
170 22 0.09
171 2 0.01
175 7 0.03
176 72 0.28
177 13 0.05
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (165 bp):
TTTTTTTTATCTGATAAAAAAGGTGGTGTCAACCAATGCATGACCAACACAAAAAAAAATATTTT
TTTATCTGATAAAAAGGTGGTGTCGACCAAGCATTGACCAACACCAAATTTTTTTTATATGATAA
AAAAAATAGTCTCAACCAAGCATTGACCAACACAA
Found at i:10654069 original size:230 final size:227
Alignment explanation
Indices: 10653693--10654179 Score: 631
Period size: 230 Copynumber: 2.1 Consensus size: 227
10653683 AACACTAAAT
** ** *
10653693 TTTTTTTATCTGATAAAAAAGGTGGTGTCGGCCAATGCATGTTCAACACAAAAAAAAAATTGTTT
1 TTTTTTTATCTGATAAAAAAGGTGGTGTCAACCAATGCATGGCCAACACAAAAAAAAAATTATTT
* *
10653758 TTCTTATCTGATAAAAAAAGGTGGTGTCAGCCAAGTATTGACCAACACAAAATTTTTTTTATCTG
66 TTCTTATCTGAT-AAAAAAGGTGGTATCAGCCAAGCATTGACCAACACAAAATTTTTTTTATCTG
*
10653823 ATAAAAAAGGTAGTGTCTACCAAGCATTGACCAACACTAAATTTTTTTTATATGATAAAAAAAAT
130 ATAAAAAAGGTAGTGTCGACCAAGCATTGACCAACAC--AATTTTTTTTATATGATAAAAAAAAT
*
10653888 GGTCTCAACCAATGCATGACCAACACTAAAAAAATTA
193 GGTCTCAACCAATGCATGACCAACACCAAAAAAA--A
* *
10653925 TTTTTTTATCTGATAAAAAAATGTTGGTGTCAACCAATGCATGGCCAACA-TAAAAAAAAATTAT
1 TTTTTTTATCTGAT-AAAAAA-GGTGGTGTCAACCAATGCATGGCCAACACAAAAAAAAAATTAT
* * *
10653989 TTTT-TTATTTGAT-AAAAAGGTGGTATC-GACCAAGCATTGACCAACACCAAATTTTTTTTATT
64 TTTTCTTATCTGATAAAAAAGGTGGTATCAG-CCAAGCATTGACCAACACAAAATTTTTTTTATC
* * * * * * **
10654051 TGATGAAAAAGGTAGTGTCGGCCAAGCATTGGCCAACACCATTTTTTTTATTTGATTAAAAAGGT
128 TGATAAAAAAGGTAGTGTCGACCAAGCATTGACCAACACAATTTTTTTTATATGATAAAAAAAAT
* **
10654116 GGTGTTGACCAATGCATGACCAACACCAAAAAAAA
193 GGTCTCAACCAATGCATGACCAACACCAAAAAAAA
* *
10654151 TATTTTTATCTGATTAAAAAGGTGGTGTC
1 TTTTTTTATCTGATAAAAAAGGTGGTGTC
10654180 GGCCAAGCAT
Statistics
Matches: 224, Mismatches: 28, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
224 8 0.04
225 5 0.02
226 14 0.06
228 51 0.23
229 1 0.00
230 78 0.35
232 22 0.10
233 22 0.10
234 23 0.10
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (227 bp):
TTTTTTTATCTGATAAAAAAGGTGGTGTCAACCAATGCATGGCCAACACAAAAAAAAAATTATTT
TTCTTATCTGATAAAAAAGGTGGTATCAGCCAAGCATTGACCAACACAAAATTTTTTTTATCTGA
TAAAAAAGGTAGTGTCGACCAAGCATTGACCAACACAATTTTTTTTATATGATAAAAAAAATGGT
CTCAACCAATGCATGACCAACACCAAAAAAAA
Found at i:10654202 original size:164 final size:166
Alignment explanation
Indices: 10653806--10654310 Score: 477
Period size: 176 Copynumber: 3.0 Consensus size: 166
10653796 TGACCAACAC
* * * *
10653806 AAAATT-TTTTTTATCTGATAAAAAAGGTAGTGTCTACCAAGCATTGACCAACACTAAATTTTTT
1 AAAATTATTTTTTATCTGAT-AAAAAGGTGGTATCGACCAAGCATTGACCAACAC-CAATTTTTT
* ** ** * * * *
10653870 TTATATGATAAAAAA-AATGGTCTCAACCAATGCATGACCAACACTAAAAAAATTATTTTTTTAT
64 TTATCTGATAAAAAATGCTAATGTCGACCAATGCATGGCCAACAC-----CAA-T-TTTTTTTAT
* * **
10653934 CTGATAAAAAAATGTTGGTGTCAACCAATGCATGGCCAACATAAAAA
122 CTGAT-AAAAAA-GGTGGTGTCGACCAATGCATGGCCAACACCAAAA
*
10653981 AAAATTATTTTTTTATTTGATAAAAAGGTGGTATCGACCAAGCATTGACCAACACCAAATTTTTT
1 AAAATTA-TTTTTTATCTGATAAAAAGGTGGTATCGACCAAGCATTGACCAACACC-AATTTTTT
* * * * * * *
10654046 TTATTTGATGAAAAA-GGTAGTGTCGGCCAA-GCATTGGCCAACACC-ATTTTTTTTATTTGATT
64 TTATCTGATAAAAAATGCTAATGTCGACCAATGCA-TGGCCAACACCAATTTTTTTTATCTGATA
* *
10654108 AAAAAGGTGGTGTTGACCAATGCATGACCAACACCAAAA
128 AAAAAGGTGGTGTCGACCAATGCATGGCCAACACCAAAA
* * * *
10654147 AAAA-TA-TTTTTATCTGATTAAAAAGGTGGTGTCGGCCAAGCATTGGCCTACACCAATTTTTTT
1 AAAATTATTTTTTATCTGA-TAAAAAGGTGGTATCGACCAAGCATTGACCAACACCAATTTTTTT
* * *
10654210 TATCTGATAAAAAATGCTAATGTCGACCAATGCATGGCTAATACCAAAATTTGTTTTATCTGATA
65 TATCTGATAAAAAATGCTAATGTCGACCAATGCATGGCCAACACC--AATTTTTTTTATCTGATA
*
10654275 AAAAAGGTGGTGTCGGCCAA-GCATTGGCCAACACCA
128 AAAAAGGTGGTGTCGACCAATGCA-TGGCCAACACCA
10654311 TTAATTTTTT
Statistics
Matches: 278, Mismatches: 41, Indels: 30
0.80 0.12 0.09
Matches are distributed among these distances:
163 31 0.11
164 53 0.19
165 5 0.02
166 35 0.13
167 48 0.17
168 13 0.05
169 1 0.00
170 1 0.00
175 9 0.03
176 70 0.25
177 12 0.04
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31
Consensus pattern (166 bp):
AAAATTATTTTTTATCTGATAAAAAGGTGGTATCGACCAAGCATTGACCAACACCAATTTTTTTT
ATCTGATAAAAAATGCTAATGTCGACCAATGCATGGCCAACACCAATTTTTTTTATCTGATAAAA
AAGGTGGTGTCGACCAATGCATGGCCAACACCAAAA
Found at i:10660949 original size:17 final size:16
Alignment explanation
Indices: 10660927--10660958 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
10660917 AAATAAAAAT
10660927 AGGAAATAAACATGCAA
1 AGGAAATAAA-ATGCAA
10660944 AGGAAATAAAATGCA
1 AGGAAATAAAATGCA
10660959 CTTGAGCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.59, C:0.09, G:0.19, T:0.12
Consensus pattern (16 bp):
AGGAAATAAAATGCAA
Found at i:10664944 original size:12 final size:12
Alignment explanation
Indices: 10664927--10664974 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
10664917 CAGGTTCAGT
10664927 TTCTTCCTTCTC
1 TTCTTCCTTCTC
10664939 TTCTTCCTTCTTC
1 TTCTTCCTTC-TC
10664952 TTCTT--TT-TC
1 TTCTTCCTTCTC
*
10664961 TTCATCCTTCTC
1 TTCTTCCTTCTC
10664973 TT
1 TT
10664975 GATCACCTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
9 6 0.19
11 4 0.13
12 14 0.45
13 7 0.23
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.62
Consensus pattern (12 bp):
TTCTTCCTTCTC
Found at i:10664954 original size:22 final size:22
Alignment explanation
Indices: 10664927--10664971 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
10664917 CAGGTTCAGT
*
10664927 TTCTTCCTTCTCTTCTTCCTTC
1 TTCTTCCTTCTCTTCATCCTTC
* *
10664949 TTCTTCTTTTTCTTCATCCTTC
1 TTCTTCCTTCTCTTCATCCTTC
10664971 T
1 T
10664972 CTTGATCACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (22 bp):
TTCTTCCTTCTCTTCATCCTTC
Found at i:10674156 original size:27 final size:27
Alignment explanation
Indices: 10674121--10674192 Score: 144
Period size: 27 Copynumber: 2.7 Consensus size: 27
10674111 GGATACACGA
10674121 GGGTAAAATGGTAATTTTGGACTCTTG
1 GGGTAAAATGGTAATTTTGGACTCTTG
10674148 GGGTAAAATGGTAATTTTGGACTCTTG
1 GGGTAAAATGGTAATTTTGGACTCTTG
10674175 GGGTAAAATGGTAATTTT
1 GGGTAAAATGGTAATTTT
10674193 TAAAAGTTTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.28, C:0.06, G:0.29, T:0.38
Consensus pattern (27 bp):
GGGTAAAATGGTAATTTTGGACTCTTG
Found at i:10674588 original size:32 final size:32
Alignment explanation
Indices: 10674525--10674595 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
10674515 AAATATTGGG
* *
10674525 CCAAATTAAAAATAATTAAAAGTACAAAAAGGA
1 CCAAATT-GAAATAATTAAAAATACAAAAAGGA
* *
10674558 CTAAATTGAAATAATTAAAAAATAC-GAAAGGA
1 CCAAATTGAAATAATT-AAAAATACAAAAAGGA
10674590 CCAAAT
1 CCAAAT
10674596 GCATATATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
32 19 0.59
33 13 0.41
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.20
Consensus pattern (32 bp):
CCAAATTGAAATAATTAAAAATACAAAAAGGA
Found at i:10676069 original size:16 final size:17
Alignment explanation
Indices: 10676031--10676106 Score: 84
Period size: 17 Copynumber: 4.5 Consensus size: 17
10676021 CTATTTGGGT
*
10676031 TTTTAATATTAATTTAAA
1 TTTTAATA-AAATTTAAA
*
10676049 TTTTAATTAAATTTAAA
1 TTTTAATAAAATTTAAA
* **
10676066 TTTAAAGCAAATTTAAA
1 TTTTAATAAAATTTAAA
10676083 TTTTAA-AAAATTTAAA
1 TTTTAATAAAATTTAAA
10676099 -TTTAATAA
1 TTTTAATAA
10676107 TAAATAAATT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
15 5 0.10
16 11 0.22
17 27 0.54
18 7 0.14
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (17 bp):
TTTTAATAAAATTTAAA
Found at i:10676121 original size:6 final size:6
Alignment explanation
Indices: 10676041--10676103 Score: 55
Period size: 6 Copynumber: 11.2 Consensus size: 6
10676031 TTTTAATATT
* **
10676041 AATTTA AATTTT AA-TTA AATTTA AATTTA AA-GCA AATTTA AATTTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AA-TTTA
10676088 AA---A AATTTA AATTTA A
1 AATTTA AATTTA AATTTA A
10676104 TAATAAATAA
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
3 3 0.07
5 7 0.16
6 29 0.64
7 6 0.13
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (6 bp):
AATTTA
Found at i:10676687 original size:90 final size:91
Alignment explanation
Indices: 10676525--10676706 Score: 330
Period size: 90 Copynumber: 2.0 Consensus size: 91
10676515 TCACTTATTT
*
10676525 TGATCCACTTCTCTATGTTTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTAGG
1 TGATCCACTTCTCTATGTTTCATCAGAAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTAGG
10676590 TTTGATTTGGTCTTCTTCTCAGTATC
66 TTTGATTTGGTCTTCTTCTCAGTATC
* *
10676616 TGATCCAC-TCTCTGTGTTTCATCAGAAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGG
1 TGATCCACTTCTCTATGTTTCATCAGAAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTAGG
10676680 TTTGATTTGGTCTTCTTCTCAGTATC
66 TTTGATTTGGTCTTCTTCTCAGTATC
10676706 T
1 T
10676707 CATCAGGAAG
Statistics
Matches: 88, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
90 80 0.91
91 8 0.09
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (91 bp):
TGATCCACTTCTCTATGTTTCATCAGAAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTAGG
TTTGATTTGGTCTTCTTCTCAGTATC
Found at i:10677030 original size:39 final size:38
Alignment explanation
Indices: 10676983--10677196 Score: 138
Period size: 39 Copynumber: 5.6 Consensus size: 38
10676973 TGTAATCTAC
* *
10676983 CCCTGGCTCAGGTTAAGAGATTGGTTGACGATGATCTG
1 CCCTGGCTCGGGGTAAGAGATTGGTTGACGATGATCTG
* ****
10677021 CCCTAGGCTCGGGGTAAAAGATCAAATGAC--TGCAATCTG
1 CCCT-GGCTCGGGGTAAGAGATTGGTTGACGATG--ATCTG
*
10677060 CCCTTGGCTCGGGGTAAGAGATTGGTTGACGACGATCTG
1 CCC-TGGCTCGGGGTAAGAGATTGGTTGACGATGATCTG
** *
10677099 CCCAAGCTTGGGGTAA-AGGATCAAATGGTTG-C-A--ATCTG
1 CCCTGGCTCGGGGTAAGA-GAT----TGGTTGACGATGATCTG
* *
10677137 CCCTTGGCTC-GGGTAAGAGATTGATTGATGATGATCTG
1 CCC-TGGCTCGGGGTAAGAGATTGGTTGACGATGATCTG
**
10677175 CCTCAAGCTCGGGGTAAGAGAT
1 CC-CTGGCTCGGGGTAAGAGAT
10677197 CAAATGGCTT
Statistics
Matches: 134, Mismatches: 23, Indels: 37
0.69 0.12 0.19
Matches are distributed among these distances:
34 5 0.04
36 1 0.01
37 3 0.02
38 45 0.34
39 70 0.52
40 2 0.01
41 2 0.01
42 6 0.04
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (38 bp):
CCCTGGCTCGGGGTAAGAGATTGGTTGACGATGATCTG
Found at i:10677143 original size:77 final size:77
Alignment explanation
Indices: 10676914--10677231 Score: 381
Period size: 78 Copynumber: 4.1 Consensus size: 77
10676904 CCCGTGATTA
* * * * *
10676914 GGGTAAGGAGATTGGTTGATGGTGATCTGCCCCAAGCTTGGGGTAAGAGATCAAATAATTGTAAT
1 GGGTAA-GAGATTGGTTGACGATGATCTG-CCCAAGCTCGGGGTAAGAGATCAAATGATTGCAAT
*
10676979 CTACCCCTGGCTCA
64 CTACCCCTGGCTCG
* * * *
10676993 GGTTAAGAGATTGGTTGACGATGATCTGCCCTAGGCTCGGGGTAAAAGATCAAATGACTGCAATC
1 GGGTAAGAGATTGGTTGACGATGATCTGCCC-AAGCTCGGGGTAAGAGATCAAATGATTGCAATC
* *
10677058 TGCCCTTGGCTCG
65 TACCCCTGGCTCG
* * *
10677071 GGGTAAGAGATTGGTTGACGACGATCTGCCCAAGCTTGGGGTAA-AGGATCAAATGGTTGCAATC
1 GGGTAAGAGATTGGTTGACGATGATCTGCCCAAGCTCGGGGTAAGA-GATCAAATGATTGCAATC
* *
10677135 TGCCCTTGGCTC-
65 TACCCCTGGCTCG
* * *
10677147 GGGTAAGAGATTGATTGATGATGATCTGCCTCAAGCTCGGGGTAAGAGATCAAATGGCTT-CAAT
1 GGGTAAGAGATTGGTTGACGATGATCTGCC-CAAGCTCGGGGTAAGAGATCAAAT-GATTGCAAT
10677211 CTACCCCTGGCTCG
64 CTACCCCTGGCTCG
10677225 GGGTAAG
1 GGGTAAG
10677232 GGATCAGAAT
Statistics
Matches: 208, Mismatches: 25, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
76 28 0.13
77 78 0.38
78 97 0.47
79 5 0.02
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (77 bp):
GGGTAAGAGATTGGTTGACGATGATCTGCCCAAGCTCGGGGTAAGAGATCAAATGATTGCAATCT
ACCCCTGGCTCG
Found at i:10677574 original size:49 final size:49
Alignment explanation
Indices: 10677502--10677757 Score: 352
Period size: 49 Copynumber: 5.2 Consensus size: 49
10677492 TTAAACCAAA
* *
10677502 TCTTCGTGGTACTGGATTCGCCGTCGCGGCTTAGATCTTTCCCTTCATG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTCATG
* * * *
10677551 TCTTCATGGTACTAGATCCGCCGTCGCGACTTAGATCTTTCCCTTCATG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTCATG
* * *
10677600 TCTTCGTGGTACTGGATCTGCCCTTGCGGCTTAAATCTTTCCCTT-ATG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTCATG
** * * *
10677648 TCTTCGTGGTACTGGATCTACTGTTGCGGTCTTAGATCTTTCCCGTCGTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGG-CTTAGATCTTTCCCTTCATG
*
10677698 TCTTCTTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTCATG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTCATG
*
10677747 TCTTCGAGGTA
1 TCTTCGTGGTA
10677758 TAAGGTTCCC
Statistics
Matches: 180, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
48 29 0.16
49 124 0.69
50 27 0.15
ACGTcount: A:0.12, C:0.27, G:0.23, T:0.38
Consensus pattern (49 bp):
TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTCATG
Found at i:10679021 original size:12 final size:12
Alignment explanation
Indices: 10679006--10679084 Score: 74
Period size: 12 Copynumber: 6.4 Consensus size: 12
10678996 TCTATTTCTG
*
10679006 TTTTTCTTCTTG
1 TTTTTCTTCTTC
10679018 TTTTTGCTT-TTC
1 TTTTT-CTTCTTC
*
10679030 TTCCTTTTTTCTCTC
1 TT--TTTCTTCT-TC
10679045 TTTTTCTTCTTC
1 TTTTTCTTCTTC
10679057 TTTTTCTTCTTC
1 TTTTTCTTCTTC
10679069 TTCTTTC-TCTT-
1 TT-TTTCTTCTTC
10679080 TTTTT
1 TTTTT
10679085 TTAAATTTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
10 3 0.05
11 2 0.03
12 29 0.50
13 16 0.28
14 4 0.07
15 4 0.07
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.75
Consensus pattern (12 bp):
TTTTTCTTCTTC
Found at i:10679051 original size:21 final size:20
Alignment explanation
Indices: 10679025--10679083 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
10679015 TTGTTTTTGC
10679025 TTTTCTTCCTTTTTTCTCTCT
1 TTTTCTTCCTTTTTTCT-TCT
*
10679046 TTTTCTTCTTCTTTTTCTTCT
1 TTTTCTTCCT-TTTTTCTTCT
*
10679067 TCTTCTTTCTCTTTTTT
1 TTTTC-TTC-CTTTTTT
10679084 TTTAAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 16 0.50
22 15 0.47
23 1 0.03
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTCTTCCTTTTTTCTTCT
Found at i:10679055 original size:9 final size:9
Alignment explanation
Indices: 10679006--10679084 Score: 58
Period size: 9 Copynumber: 8.6 Consensus size: 9
10678996 TCTATTTCTG
10679006 TTTTTCTTC
1 TTTTTCTTC
10679015 TTGTTT-TTGC
1 TT-TTTCTT-C
10679025 -TTTTCTTCC
1 TTTTTCTT-C
10679034 TTTTTTCTCTC
1 -TTTTTCT-TC
10679045 TTTTTCTTC
1 TTTTTCTTC
10679054 TTCTTT-TTC
1 TT-TTTCTTC
*
10679063 TTCTTCTTC
1 TTTTTCTTC
*
10679072 TTTCTCTT-
1 TTTTTCTTC
10679080 TTTTT
1 TTTTT
10679085 TTAAATTTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 17
0.72 0.06 0.22
Matches are distributed among these distances:
8 9 0.16
9 26 0.46
10 14 0.25
11 7 0.12
12 1 0.02
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.75
Consensus pattern (9 bp):
TTTTTCTTC
Found at i:10679079 original size:15 final size:15
Alignment explanation
Indices: 10679048--10679079 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
10679038 TTCTCTCTTT
*
10679048 TTCTTCTTCTTTTTC
1 TTCTTCTTCTTTCTC
10679063 TTCTTCTTCTTTCTC
1 TTCTTCTTCTTTCTC
10679078 TT
1 TT
10679080 TTTTTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (15 bp):
TTCTTCTTCTTTCTC
Found at i:10680048 original size:10 final size:10
Alignment explanation
Indices: 10680029--10680063 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
10680019 CCCATTTTTC
10680029 TTTTTCTCTT
1 TTTTTCTCTT
*
10680039 TTTTTTTCTT
1 TTTTTCTCTT
*
10680049 TCTTTCTCTT
1 TTTTTCTCTT
10680059 TTTTT
1 TTTTT
10680064 TTGATAACAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTCTCTT
Found at i:10680053 original size:22 final size:20
Alignment explanation
Indices: 10680023--10680065 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
10680013 TTTCGACCCA
10680023 TTTTTC-TT-TTTCTCTTTT
1 TTTTTCTTTCTTTCTCTTTT
10680041 TTTTTCTTTCTTTCTCTTTT
1 TTTTTCTTTCTTTCTCTTTT
10680061 TTTTT
1 TTTTT
10680066 GATAACACGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 6 0.26
19 2 0.09
20 15 0.65
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTTCTTTCTTTCTCTTTT
Found at i:10684900 original size:59 final size:60
Alignment explanation
Indices: 10684746--10685086 Score: 274
Period size: 59 Copynumber: 5.8 Consensus size: 60
10684736 ACTCTTGGGG
* * * * * * *
10684746 CAAAATTGTGATTTTTGAAAGTTTTG-GAGTCAAAAATAGAGTTTTTGGACATTCGGGGGT
1 CAAAATGGTAATTTTTGAAAGTTTCGAG-GTCAAAAATGGAATTTTTGAACATTCGAGGGT
** * * *
10684806 CAAAATGGTAATTTTT-AGAAGTTTTAAGGTTAAAAATGGAATTTTTAAATATTCGAGGGT
1 CAAAATGGTAATTTTTGA-AAGTTTCGAGGTCAAAAATGGAATTTTTGAACATTCGAGGGT
* *
10684866 -AAAATGGTAATTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTTGGACATT-TAGGGT
1 CAAAATGGTAATTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTTGAACATTCGAGGGT
* * * * * * ***
10684924 CAAAAATGG-AATTTTTGGAA-TTTCTAGGGCAAAAATGTATTTTTTGGAA-GTTTTTGGGT
1 C-AAAATGGTAATTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTT-GAACATTCGAGGGT
* * * *
10684983 CAAAAT-GTAATTTTTGGAAGTTTTGGGGTTAAAAATGGAATTTTTGGAA-ATTCGA-GGT
1 CAAAATGGTAATTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTT-GAACATTCGAGGGT
* * *
10685041 CAAAAATGG-AATTTTTGGAA-TTTCGAGGGCAAAAATGTAATTTTTG
1 C-AAAATGGTAATTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTTG
10685087 GAAGTTTTCG
Statistics
Matches: 229, Mismatches: 41, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
57 2 0.01
58 68 0.30
59 103 0.45
60 55 0.24
61 1 0.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.38
Consensus pattern (60 bp):
CAAAATGGTAATTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTTGAACATTCGAGGGT
Found at i:10685017 original size:117 final size:117
Alignment explanation
Indices: 10684740--10685122 Score: 409
Period size: 117 Copynumber: 3.2 Consensus size: 117
10684730 TTTTAGACTC
* * * * * **
10684740 TTGGGGCAAAATTGTGATTTTTGAAAGTTTTGGAGTCAAAAATAGAGTTTTTGGACATTCGGGGG
1 TTGGGTCAAAA-TGTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATT-TAGGG
* ** * *
10684805 TC-AAAATGGTAATTTTTAGAAGTTT-TAAGGTTAAAAATGGAATTTTT--AAATATT
64 TCAAAAATGG-AATTTTTGGAA-TTTCT-AGGGCAAAAATGTAATTTTTGGAAGT-TT
** * *
10684859 CGAGGGT-AAAATGGTAATTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTTGGACATTTAGGG
1 -TTGGGTCAAAAT-GTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATTTAGGG
*
10684923 TCAAAAATGGAATTTTTGGAATTTCTAGGGCAAAAATGTATTTTTTGGAAGTTT
64 TCAAAAATGGAATTTTTGGAATTTCTAGGGCAAAAATGTAATTTTTGGAAGTTT
* * * *
10684977 TTGGGTCAAAATGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGAATTTTTGGA-AATTCGAGGT
1 TTGGGTCAAAATGTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATTTAG-GGT
*
10685041 CAAAAATGGAATTTTTGGAATTTCGAGGGCAAAAATGTAATTTTTGGAAGTTT
65 CAAAAATGGAATTTTTGGAATTTCTAGGGCAAAAATGTAATTTTTGGAAGTTT
* ** *
10685094 TCGGAACAAAATATAATTTTTGAAAGTTT
1 TTGGGTCAAAATGTAATTTTTGAAAGTTT
10685123 AGGGACCTCC
Statistics
Matches: 224, Mismatches: 32, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
116 4 0.02
117 139 0.62
118 24 0.11
119 54 0.24
120 3 0.01
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.38
Consensus pattern (117 bp):
TTGGGTCAAAATGTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAATTTTTGGACATTTAGGGTC
AAAAATGGAATTTTTGGAATTTCTAGGGCAAAAATGTAATTTTTGGAAGTTT
Found at i:10685087 original size:29 final size:29
Alignment explanation
Indices: 10684776--10685089 Score: 241
Period size: 29 Copynumber: 10.7 Consensus size: 29
10684766 GTTTTGGAGT
* * *
10684776 CAAAAATAGAGTTTTTGGACA-TTCGGGGG
1 CAAAAATGGAATTTTTGGA-ATTTCGAGGG
* ** *
10684805 TC-AAAATGGTAATTTTTAGAAGTTTTAAGGT
1 -CAAAAATGG-AATTTTTGGAA-TTTCGAGGG
* *
10684836 TAAAAATGGAATTTTT-AAATATTCGAGGG
1 CAAAAATGGAATTTTTGGAAT-TTCGAGGG
* * *
10684865 -TAAAATGGTAATTTTTGAAAGTTTCGAGGT
1 CAAAAATGG-AATTTTTGGAA-TTTCGAGGG
10684895 CAAAAATGGAATTTTTGGACATTT--AGGG
1 CAAAAATGGAATTTTTGGA-ATTTCGAGGG
*
10684923 TCAAAAATGGAATTTTTGGAATTTCTAGGG
1 -CAAAAATGGAATTTTTGGAATTTCGAGGG
* * * *
10684953 CAAAAATGTATTTTTTGGAAGTTTTTG-GGT
1 CAAAAATGGAATTTTTGGAA--TTTCGAGGG
* *
10684983 C-AAAATGTAATTTTTGGAAGTTTTG-GGG
1 CAAAAATGGAATTTTTGGAA-TTTCGAGGG
* * *
10685011 TTAAAAATGGAATTTTTGGAAATTCGAGGT
1 -CAAAAATGGAATTTTTGGAATTTCGAGGG
10685041 CAAAAATGGAATTTTTGGAATTTCGAGGG
1 CAAAAATGGAATTTTTGGAATTTCGAGGG
*
10685070 CAAAAATGTAATTTTTGGAA
1 CAAAAATGGAATTTTTGGAA
10685090 GTTTTCGGAA
Statistics
Matches: 232, Mismatches: 34, Indels: 37
0.77 0.11 0.12
Matches are distributed among these distances:
28 22 0.09
29 123 0.53
30 64 0.28
31 23 0.10
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (29 bp):
CAAAAATGGAATTTTTGGAATTTCGAGGG
Found at i:10685094 original size:88 final size:88
Alignment explanation
Indices: 10684774--10685094 Score: 327
Period size: 88 Copynumber: 3.6 Consensus size: 88
10684764 AAGTTTTGGA
* * * * *
10684774 GTCAAAAATAGAGTTTTTGGACA--TTCGGGGGTCAAAATGGTAATTTTTAGAAGTTTTAAGGTT
1 GTCAAAAATGGAATTTTTGGA-AGTTTCGAGGG-CAAAAT-GTAATTTTTGGAAGTTTTAGGGTT
*
10684837 AAAAATGGAATTTTT-AAATATTCGAGG
63 AAAAATGGAATTTTTGGAA-ATTCGA-G
* * * *
10684864 GT--AAAATGGTAATTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTTGGACA--TTTAGGGTC
1 GTCAAAAATGG-AATTTTTGGAAGTTTCGAGGGC-AAAATGTAATTTTTGGA-AGTTTTAGGGTT
* *
10684925 AAAAATGGAATTTTTGGAATTTCTAG
63 AAAAATGGAATTTTTGGAAATTCGAG
* * * * * *
10684951 GGCAAAAATGTATTTTTTGGAAGTTTTTG-GGTCAAAATGTAATTTTTGGAAGTTTTGGGGTTAA
1 GTCAAAAATGGAATTTTTGGAAG-TTTCGAGGGCAAAATGTAATTTTTGGAAGTTTTAGGGTTAA
10685015 AAATGGAATTTTTGGAAATTCGAG
65 AAATGGAATTTTTGGAAATTCGAG
10685039 GTCAAAAATGGAATTTTTGGAA-TTTCGAGGGCAAAAATGTAATTTTTGGAAGTTTT
1 GTCAAAAATGGAATTTTTGGAAGTTTCGAGGGC-AAAATGTAATTTTTGGAAGTTTT
10685095 CGGAACAAAA
Statistics
Matches: 191, Mismatches: 27, Indels: 28
0.78 0.11 0.11
Matches are distributed among these distances:
86 5 0.03
87 21 0.11
88 120 0.63
89 31 0.16
90 14 0.07
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (88 bp):
GTCAAAAATGGAATTTTTGGAAGTTTCGAGGGCAAAATGTAATTTTTGGAAGTTTTAGGGTTAAA
AATGGAATTTTTGGAAATTCGAG
Found at i:10685104 original size:29 final size:29
Alignment explanation
Indices: 10684866--10685122 Score: 156
Period size: 29 Copynumber: 8.8 Consensus size: 29
10684856 ATTCGAGGGT
* *
10684866 AAAATGGTAATTTTTGAAAG-TTTCGAGGTC
1 AAAAT-GTAATTTTTGGAAGTTTTCG-GGAC
* * *
10684896 AAAAATGGAATTTTTGGACA--TTTAGGGTC
1 -AAAATGTAATTTTTGGA-AGTTTTCGGGAC
* *
10684925 AAAAATGGAATTTTTGGAA-TTTCTAGGG-C
1 -AAAATGTAATTTTTGGAAGTTT-TCGGGAC
* * *
10684954 AAAAATGTATTTTTTGGAAGTTTTTGGGTC
1 -AAAATGTAATTTTTGGAAGTTTTCGGGAC
*
10684984 AAAATGTAATTTTTGGAAGTTTTGGGGTTA-
1 AAAATGTAATTTTTGGAAGTTTTCGGG--AC
* * *
10685014 AAAATGGAATTTTTGGAA--ATTCGAGGTC
1 AAAATGTAATTTTTGGAAGTTTTCG-GGAC
* *
10685042 AAAAATGGAATTTTTGGAA--TTTCGAGGGC
1 -AAAATGTAATTTTTGGAAGTTTTCG-GGAC
*
10685071 AAAAATGTAATTTTTGGAAGTTTTCGGAAC
1 -AAAATGTAATTTTTGGAAGTTTTCGGGAC
* *
10685101 AAAATATAATTTTTGAAAGTTT
1 AAAATGTAATTTTTGGAAGTTT
10685123 AGGGACCTCC
Statistics
Matches: 194, Mismatches: 20, Indels: 26
0.81 0.08 0.11
Matches are distributed among these distances:
28 4 0.02
29 137 0.71
30 42 0.22
31 11 0.06
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAGTTTTCGGGAC
Found at i:10686006 original size:13 final size:13
Alignment explanation
Indices: 10685988--10686017 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
10685978 TTTATTTAGA
10685988 TTTTTTTAAAACC
1 TTTTTTTAAAACC
10686001 TTTTTTTAAAACC
1 TTTTTTTAAAACC
10686014 TTTT
1 TTTT
10686018 GTTCCCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTTTTAAAACC
Found at i:10687001 original size:6 final size:6
Alignment explanation
Indices: 10686992--10687068 Score: 65
Period size: 6 Copynumber: 13.5 Consensus size: 6
10686982 TTTTAATATT
* **
10686992 AATTTA AATTTT AA-TTA AATTTA AATTTA AA-ACA AATTTA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
* *
10687038 AA--AA AATTTA AATTT- AATAATA AATTTA AAT
1 AATTTA AATTTA AATTTA AAT-TTA AATTTA AAT
10687069 CTATTCAAAC
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
4 3 0.05
5 10 0.18
6 39 0.71
7 3 0.05
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (6 bp):
AATTTA
Found at i:10687014 original size:17 final size:17
Alignment explanation
Indices: 10686982--10687068 Score: 79
Period size: 17 Copynumber: 5.1 Consensus size: 17
10686972 CTATTTGGGT
*
10686982 TTTTAATATTAATTTAAA
1 TTTTAAT-TAAATTTAAA
10687000 TTTTAATTAAATTTAAA
1 TTTTAATTAAATTTAAA
* **
10687017 TTTAAAACAAATTTAAA
1 TTTTAATTAAATTTAAA
**
10687034 -TTTAAAAAAATTTAAA
1 TTTTAATTAAATTTAAA
10687050 -TTTAATAATAAATTTAAA
1 TTTTAAT--TAAATTTAAA
10687068 T
1 T
10687069 CTATTCAAAC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
16 19 0.33
17 23 0.40
18 16 0.28
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (17 bp):
TTTTAATTAAATTTAAA
Found at i:10687021 original size:34 final size:34
Alignment explanation
Indices: 10686983--10687068 Score: 111
Period size: 34 Copynumber: 2.5 Consensus size: 34
10686973 TATTTGGGTT
* **
10686983 TTTAATATTAATTTAAATTTTAATTAAATTTAAA
1 TTTAATATAAATTTAAATTTTAAAAAAATTTAAA
* *
10687017 TTTAAAACAAATTTAAA-TTTAAAAAAATTTAAA
1 TTTAATATAAATTTAAATTTTAAAAAAATTTAAA
10687050 TTTAATAATAAATTTAAAT
1 TTTAAT-ATAAATTTAAAT
10687069 CTATTCAAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
33 19 0.44
34 24 0.56
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (34 bp):
TTTAATATAAATTTAAATTTTAAAAAAATTTAAA
Found at i:10690239 original size:15 final size:15
Alignment explanation
Indices: 10690219--10690248 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
10690209 ACTTAAGCTG
10690219 CACGAAGAATTACCT
1 CACGAAGAATTACCT
10690234 CACGAAGAATTACCT
1 CACGAAGAATTACCT
10690249 TACTCATGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (15 bp):
CACGAAGAATTACCT
Found at i:10694489 original size:18 final size:18
Alignment explanation
Indices: 10694461--10694502 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
10694451 GCTCTCGGCA
*
10694461 GCTGCTGCTCCCCGTCCT
1 GCTGCTACTCCCCGTCCT
* *
10694479 GTTGCTACTCCTCGTCCT
1 GCTGCTACTCCCCGTCCT
10694497 GCTGCT
1 GCTGCT
10694503 GAACCGCAGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.02, C:0.43, G:0.21, T:0.33
Consensus pattern (18 bp):
GCTGCTACTCCCCGTCCT
Found at i:10696636 original size:18 final size:18
Alignment explanation
Indices: 10696615--10696649 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
10696605 TTTTTATACT
10696615 TTTTAATAA-TTTTAAAAA
1 TTTTAA-AAGTTTTAAAAA
10696633 TTTTAAAAGTTTTAAAA
1 TTTTAAAAGTTTTAAAA
10696650 TTAATTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
TTTTAAAAGTTTTAAAAA
Found at i:10696849 original size:11 final size:11
Alignment explanation
Indices: 10696828--10696889 Score: 51
Period size: 11 Copynumber: 5.7 Consensus size: 11
10696818 TATGTCTTAA
10696828 AAATATTAATTT
1 AAAT-TTAATTT
10696840 AAATTTAATTT
1 AAATTTAATTT
*
10696851 -AATTTAA-AT
1 AAATTTAATTT
*
10696860 AAA-ATAATTT
1 AAATTTAATTT
10696870 CAAATTATAATTT
1 -AAATT-TAATTT
10696883 -AATTTAA
1 AAATTTAA
10696890 ACATTTTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
9 4 0.10
10 13 0.32
11 14 0.34
12 4 0.10
13 6 0.15
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (11 bp):
AAATTTAATTT
Found at i:10696911 original size:14 final size:15
Alignment explanation
Indices: 10696880--10696912 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
10696870 CAAATTATAA
*
10696880 TTTAATTTAAACATT
1 TTTAATATAAACATT
10696895 TTTAATATAAA-ATT
1 TTTAATATAAACATT
10696909 TTTA
1 TTTA
10696913 GTTTGACTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTAATATAAACATT
Found at i:10708410 original size:30 final size:30
Alignment explanation
Indices: 10708374--10708435 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
10708364 AGGTCTAACC
10708374 AGTACTAATTATTACCTAACATTACTAGTT
1 AGTACTAATTATTACCTAACATTACTAGTT
*
10708404 AGTACTAATTATTACCTAACATTACTTGTT
1 AGTACTAATTATTACCTAACATTACTAGTT
10708434 AG
1 AG
10708436 CTATTTACTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.40
Consensus pattern (30 bp):
AGTACTAATTATTACCTAACATTACTAGTT
Found at i:10709199 original size:15 final size:15
Alignment explanation
Indices: 10709178--10709252 Score: 63
Period size: 14 Copynumber: 5.3 Consensus size: 15
10709168 AAGTGGGAAT
10709178 ATAAATAACATAA-AA
1 ATAAATAACA-AATAA
*
10709193 GTAAATAACAAATAA
1 ATAAATAACAAATAA
10709208 ATAAATAA-AAA-ACA
1 ATAAATAACAAATA-A
10709222 ATAAATAA-AAAT-A
1 ATAAATAACAAATAA
* *
10709235 GTAAATAA-AATTAA
1 ATAAATAACAAATAA
10709249 ATAA
1 ATAA
10709253 CAAATAAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
13 12 0.24
14 21 0.41
15 18 0.35
ACGTcount: A:0.72, C:0.04, G:0.03, T:0.21
Consensus pattern (15 bp):
ATAAATAACAAATAA
Found at i:10709226 original size:14 final size:14
Alignment explanation
Indices: 10709194--10709252 Score: 68
Period size: 14 Copynumber: 4.2 Consensus size: 14
10709184 AACATAAAAG
10709194 TAAATAACAAATAAA
1 TAAATAA-AAATAAA
10709209 TAAATAAAAA-ACAA
1 TAAATAAAAATA-AA
*
10709223 TAAATAAAAAT-AG
1 TAAATAAAAATAAA
*
10709236 TAAATAAAATTAAA
1 TAAATAAAAATAAA
10709250 TAA
1 TAA
10709253 CAAATAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 12 0.32
14 19 0.50
15 7 0.18
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.22
Consensus pattern (14 bp):
TAAATAAAAATAAA
Found at i:10709250 original size:17 final size:17
Alignment explanation
Indices: 10709152--10709262 Score: 61
Period size: 17 Copynumber: 6.5 Consensus size: 17
10709142 AATAGTAAAG
10709152 AAATAAAATTAAATAA-
1 AAATAAAATTAAATAAC
* **
10709168 AAGTGGGAATATAAATAAC
1 AAAT-AAAAT-TAAATAAC
*
10709187 --ATAAAAGTAAATAAC
1 AAATAAAATTAAATAAC
*
10709202 AAAT-AAA-TAAATAAA
1 AAATAAAATTAAATAAC
* * **
10709217 AAACAATAAATAAAAATAGT
1 AAA-TA-AAAT-TAAATAAC
10709237 AAATAAAATTAAATAAC
1 AAATAAAATTAAATAAC
10709254 AAATAAAAT
1 AAATAAAAT
10709263 AAAAAATGGG
Statistics
Matches: 69, Mismatches: 16, Indels: 19
0.66 0.15 0.18
Matches are distributed among these distances:
15 18 0.26
16 8 0.12
17 20 0.29
18 14 0.20
19 1 0.01
20 8 0.12
ACGTcount: A:0.69, C:0.04, G:0.05, T:0.22
Consensus pattern (17 bp):
AAATAAAATTAAATAAC
Found at i:10711246 original size:50 final size:50
Alignment explanation
Indices: 10711191--10711352 Score: 170
Period size: 50 Copynumber: 3.3 Consensus size: 50
10711181 CACTCCATTC
10711191 CACTGCAACTTCAGGGGAGATTGAGATTTGCTACTTGTTTTAATCCGCTT
1 CACTGCAACTTCAGGGGAGATTGAGATTTGCTACTTGTTTTAATCCGCTT
* * * * * * * *
10711241 CACTGCAACTTCA-GGAAGATAG-GATTTGGT-GTGGCTTTACTCC-ATT
1 CACTGCAACTTCAGGGGAGATTGAGATTTGCTACTTGTTTTAATCCGCTT
** * * *
10711287 CCACTATAACTTCAGTGGAGATTGAGATCTGCTACTTGTTTTAATCTGCTT
1 -CACTGCAACTTCAGGGGAGATTGAGATTTGCTACTTGTTTTAATCCGCTT
10711338 CACTGCAACTTCAGG
1 CACTGCAACTTCAGG
10711353 AAGATAAAAT
Statistics
Matches: 83, Mismatches: 24, Indels: 10
0.71 0.21 0.09
Matches are distributed among these distances:
46 2 0.02
47 20 0.24
48 13 0.16
49 13 0.16
50 33 0.40
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (50 bp):
CACTGCAACTTCAGGGGAGATTGAGATTTGCTACTTGTTTTAATCCGCTT
Found at i:10711286 original size:97 final size:97
Alignment explanation
Indices: 10711159--10711426 Score: 383
Period size: 97 Copynumber: 2.7 Consensus size: 97
10711149 TCCATTCAGT
* * *
10711159 ATAGGATTTGGTTTTGTGGCCTCACTCCATTCCACTGCAACTTCAGGGGAGATTGAGATTTGCTA
1 ATAGGATTTGG---TGTGGCTTCACTCCATTCCACTGCAACTTCAGTGGAGATTGAGATCTGCTA
10711224 CTTGTTTTAATCCGCTTCACTGCAACTTCAGGAAG
63 CTTGTTTTAATCCGCTTCACTGCAACTTCAGGAAG
* **
10711259 ATAGGATTTGGTGTGGCTTTACTCCATTCCACTATAACTTCAGTGGAGATTGAGATCTGCTACTT
1 ATAGGATTTGGTGTGGCTTCACTCCATTCCACTGCAACTTCAGTGGAGATTGAGATCTGCTACTT
*
10711324 GTTTTAATCTGCTTCACTGCAACTTCAGGAAG
66 GTTTTAATCCGCTTCACTGCAACTTCAGGAAG
** * * * * *
10711356 ATAAAATTCGGTGTGGCTTCACTCCATTCTATTGCAATTTCAGTGGATATTGAGATCTGCTACTT
1 ATAGGATTTGGTGTGGCTTCACTCCATTCCACTGCAACTTCAGTGGAGATTGAGATCTGCTACTT
10711421 GTTTTA
66 GTTTTA
10711427 CTCCATTTCC
Statistics
Matches: 151, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
97 140 0.93
100 11 0.07
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.37
Consensus pattern (97 bp):
ATAGGATTTGGTGTGGCTTCACTCCATTCCACTGCAACTTCAGTGGAGATTGAGATCTGCTACTT
GTTTTAATCCGCTTCACTGCAACTTCAGGAAG
Found at i:10730068 original size:46 final size:47
Alignment explanation
Indices: 10729884--10730105 Score: 202
Period size: 47 Copynumber: 4.8 Consensus size: 47
10729874 GTTAATGATA
* *
10729884 AATATATTGGTGGATAAACCACTGGTCGAGTAGATGACTGCTA-ACTA-
1 AATATATT-GTGGATAAACCACTGGTCGAGCAGATGACT-ATAGACTAG
* * * * *
10729931 AA-A-ATTGGTGGATGAACCACTGGTCGAGCAAATAACTGTCGACTAG
1 AATATATT-GTGGATAAACCACTGGTCGAGCAGATGACTATAGACTAG
** * ** ** *
10729977 AATACGTTGTGGATAAATCTTTGGTCGAGCAGAAAACTATCGACTAG
1 AATATATTGTGGATAAACCACTGGTCGAGCAGATGACTATAGACTAG
* *
10730024 AATATGTTGTGGAT-AACCATTGGTCGAGCAGATGACTATAGACTAG
1 AATATATTGTGGATAAACCACTGGTCGAGCAGATGACTATAGACTAG
* * *
10730070 AATACATTGTGGATAAACCACTGGTCTAGTAGATGA
1 AATATATTGTGGATAAACCACTGGTCGAGCAGATGA
10730106 ACTACCGACT
Statistics
Matches: 145, Mismatches: 25, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
44 1 0.01
45 34 0.23
46 42 0.29
47 66 0.46
48 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (47 bp):
AATATATTGTGGATAAACCACTGGTCGAGCAGATGACTATAGACTAG
Found at i:10731152 original size:30 final size:30
Alignment explanation
Indices: 10731100--10731413 Score: 223
Period size: 30 Copynumber: 10.5 Consensus size: 30
10731090 AAATTTGAGC
* **
10731100 GTTAAAGTGTAATTTTAAGAAAGTTTAAGG
1 GTTAAAATGTAATTTTGGGAAAGTTTAAGG
* ** *
10731130 TTTAAAATGTGCTTTTGGGAAAG-TTAGGGG
1 GTTAAAATGTAATTTTGGGAAAGTTTA-AGG
* * *
10731160 GTCAAAATGTGATTTTGGAAAAGTTT-AGG
1 GTTAAAATGTAATTTTGGGAAAGTTTAAGG
* * *
10731189 GTCAAAATGTACTTTT-GGAAATGTTT-GGAG
1 GTTAAAATGTAATTTTGGGAAA-GTTTAAG-G
* * *
10731219 GTTAAAAAGTAATTTTAGGAAAGTTT-GGG
1 GTTAAAATGTAATTTTGGGAAAGTTTAAGG
*
10731248 CGTCAAAATGTAATTTT-GGAGAAGTTT-AGAG
1 -GTTAAAATGTAATTTTGGGA-AAGTTTAAG-G
** *
10731279 GTTAAAATGTAATTTTGAAAAAGTTTGAGG
1 GTTAAAATGTAATTTTGGGAAAGTTTAAGG
* * * *
10731309 ATTAAAATGTGATTTTGGAAAAGTTT-GGG
1 GTTAAAATGTAATTTTGGGAAAGTTTAAGG
* * *
10731338 GTTAAAATGTGATTTTGAGAAAGTTTAGGG
1 GTTAAAATGTAATTTTGGGAAAGTTTAAGG
* **
10731368 GTTAAAATGTAATTTTGGGATAA-ATTGGGG
1 GTTAAAATGTAATTTTGGGA-AAGTTTAAGG
*
10731398 GTTAAAATATAATTTT
1 GTTAAAATGTAATTTT
10731414 CGGGTGAAAT
Statistics
Matches: 235, Mismatches: 37, Indels: 24
0.79 0.12 0.08
Matches are distributed among these distances:
28 4 0.02
29 53 0.23
30 165 0.70
31 13 0.06
ACGTcount: A:0.35, C:0.02, G:0.26, T:0.37
Consensus pattern (30 bp):
GTTAAAATGTAATTTTGGGAAAGTTTAAGG
Found at i:10731256 original size:89 final size:87
Alignment explanation
Indices: 10731086--10731385 Score: 309
Period size: 89 Copynumber: 3.4 Consensus size: 87
10731076 ATTGGGGTGA
* * * * * * * **
10731086 GGAAAAATTTGAGCGTTAAAGTGTAATTTT-AAGAAAGTTTAAGGTTTAAAATGTGCTTTTGGGA
1 GGAAAAGTTT-AGGGTTAAAATGTAATTTTGGA-AAAGTTTGAGGATTAAAAAGTAATTTT-GGA
*
10731150 AAGTTAGGGGGTCAAAATGTGATTTT
63 AAGTT-TGGGGTCAAAATGTGATTTT
* * *
10731176 GGAAAAGTTTAGGGTCAAAATGTACTTTTGGAAATGTTTGGAGG-TTAAAAAGTAATTTTAGGAA
1 GGAAAAGTTTAGGGTTAAAATGTAATTTTGGAAAAGTTT-GAGGATTAAAAAGTAATTTT-GGAA
*
10731240 AGTTTGGGCGTCAAAATGTAATTTT
64 AGTTTGGG-GTCAAAATGTGATTTT
* * * *
10731265 GGAGAAGTTTAGAGGTTAAAATGTAATTTTGAAAAAGTTTGAGGATTAAAATGTGATTTTGGAAA
1 GGAAAAGTTTAG-GGTTAAAATGTAATTTTGGAAAAGTTTGAGGATTAAAAAGTAATTTTGG-AA
*
10731330 AGTTTGGGGTTAAAATGTGATTTT
64 AGTTTGGGGTCAAAATGTGATTTT
10731354 -GAGAAAGTTTAGGGGTTAAAATGTAATTTTGG
1 GGA-AAAGTTTA-GGGTTAAAATGTAATTTTGG
10731386 GATAAATTGG
Statistics
Matches: 177, Mismatches: 25, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
88 5 0.03
89 112 0.63
90 60 0.34
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (87 bp):
GGAAAAGTTTAGGGTTAAAATGTAATTTTGGAAAAGTTTGAGGATTAAAAAGTAATTTTGGAAAG
TTTGGGGTCAAAATGTGATTTT
Found at i:10731265 original size:60 final size:58
Alignment explanation
Indices: 10731100--10731413 Score: 276
Period size: 60 Copynumber: 5.3 Consensus size: 58
10731090 AAATTTGAGC
* * * * * ** * *
10731100 GTTAAAGTGTAATTTTAAGAAAGTTTAAGGTTTAAAATGTGCTTTTGGGAAAGTTAGGGG
1 GTTAAAATGTAATTTTGAGAAAGTTT-GGGGTCAAAATGTAATTTT-GGAAAGTTTGGAG
* * * *
10731160 GTCAAAATGTGATTTTG-GAAAAGTTTAGGGTCAAAATGTACTTTTGGAAATGTTTGGAG
1 GTTAAAATGTAATTTTGAG-AAAGTTTGGGGTCAAAATGTAATTTTGGAAA-GTTTGGAG
* *
10731219 GTTAAAAAGTAATTTT-AGGAAAGTTTGGGCGTCAAAATGTAATTTTGGAGAAGTTTAGAG
1 GTTAAAATGTAATTTTGA-GAAAGTTTGGG-GTCAAAATGTAATTTTGGA-AAGTTTGGAG
* * * *
10731279 GTTAAAATGTAATTTTGAAAAAGTTTGAGGATTAAAATGTGATTTTGGAAAAGTTTGG-G
1 GTTAAAATGTAATTTTGAGAAAGTTTG-GGGTCAAAATGTAATTTTGG-AAAGTTTGGAG
* * * *
10731338 GTTAAAATGTGATTTTGAGAAAGTTTAGGGGTTAAAATGTAATTTTGGGATAA-ATTGGGG
1 GTTAAAATGTAATTTTGAGAAAGTTT-GGGGTCAAAATGTAATTTT-GGA-AAGTTTGGAG
*
10731398 GTTAAAATATAATTTT
1 GTTAAAATGTAATTTT
10731414 CGGGTGAAAT
Statistics
Matches: 213, Mismatches: 28, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
58 5 0.02
59 91 0.43
60 111 0.52
61 6 0.03
ACGTcount: A:0.35, C:0.02, G:0.26, T:0.37
Consensus pattern (58 bp):
GTTAAAATGTAATTTTGAGAAAGTTTGGGGTCAAAATGTAATTTTGGAAAGTTTGGAG
Found at i:10731413 original size:89 final size:85
Alignment explanation
Indices: 10731142--10731413 Score: 278
Period size: 89 Copynumber: 3.0 Consensus size: 85
10731132 TAAAATGTGC
* * *
10731142 TTTTGGGAAAGTTAGGGGGTCAAAATGTGATTTTGGAAAAGTTTA-GGGTCAAAATGTACTTTTG
1 TTTT-GGAAAGTT-TGGGGTCAAAATGTGATTTTGG-AAAGTTTAGGGGTTAAAATGTAATTTTG
* *
10731206 GAAATGTTTGGAGGTTAAAA-AGTAA
63 GAAA--ATTGGGGGTTAAAATA-TAA
* *
10731231 TTTTAGGAAAGTTTGGGCGTCAAAATGTAATTTTGGAGAAGTTTAGAGGTTAAAATGTAATTTTG
1 TTTT-GGAAAGTTTGGG-GTCAAAATGTGATTTTGGA-AAGTTTAGGGGTTAAAATGTAATTTTG
* * * * *
10731296 AAAAAGTTTGAGGATTAAAATGTGA
63 GAAAA--TTGGGGGTTAAAATATAA
*
10731321 TTTTGGAAAAGTTTGGGGTTAAAATGTGATTTTGAGAAAGTTTAGGGGTTAAAATGTAATTTTGG
1 TTTTGG-AAAGTTTGGGGTCAAAATGTGATTTTG-GAAAGTTTAGGGGTTAAAATGTAATTTT-G
10731386 GATAAATTGGGGGTTAAAATATAA
63 GA-AAATTGGGGGTTAAAATATAA
10731410 TTTT
1 TTTT
10731414 CGGGTGAAAT
Statistics
Matches: 152, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
88 4 0.03
89 96 0.63
90 49 0.32
91 3 0.02
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (85 bp):
TTTTGGAAAGTTTGGGGTCAAAATGTGATTTTGGAAAGTTTAGGGGTTAAAATGTAATTTTGGAA
AATTGGGGGTTAAAATATAA
Found at i:10733942 original size:208 final size:208
Alignment explanation
Indices: 10733384--10734368 Score: 1347
Period size: 208 Copynumber: 4.8 Consensus size: 208
10733374 GCTTCATTTC
* ** * * **
10733384 TTGGTCTACTTCTCTGCATCTCATCAGG-A-ATGACCGCTTTATTACTTCAACCCACTTCTT-TG
1 TTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTT-TTCTG
*
10733446 TATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTT-TCTTCATTGATTTGGT
65 TATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTTGT-TTCATTGATTTGGT
* * * * ** * *
10733510 CTACTTCTTTGTATCACATCAAGAAGATAACCAATTCATTGATTCATTCCACTTCTCTATATCTC
129 CTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAGTCCACTTCTCTATATCTC
10733575 ATCAGGAAGGCGGAT
194 ATCAGGAAGGCGGAT
* * * * * *
10733590 TTAGTCTATTTCTCTATATCTCATCAGGAAGATGACCACTTTATTGC--TGACCCATTTTTTTAT
1 TTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTTTCTGT
* * * *
10733653 ATCTCATC-GAGAAGATAGGGTTTGAAGTCTCATTCATATTGAGCTTTGCTTCATTGATTTTGTC
66 ATCTCATCAG-GAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTTGTTTCATTGATTTGGTC
* * * * *
10733717 TACTTTTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTAAATCAACTTCTCTGTATCTCA
130 TACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAGTCCACTTCTCTATATCTCA
10733782 TCAGGAAGGCAGG-T
195 TCAGGAAGGC-GGAT
*
10733796 TTGGTCCACTTCTCTATATATCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTTTCTGT
1 TTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTTTCTGT
10733861 ATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTTGTTTCATTGATTTGGTCT
66 ATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTTGTTTCATTGATTTGGTCT
* ** * *
10733926 ACTTCTCTATATCTCATCAGGAAGATGATTGCTTCATTAATTTAGTCCACTTCTCTATATTTCAT
131 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAGTCCACTTCTCTATATCTCAT
10733991 CAGGAAGGCGGAT
196 CAGGAAGGCGGAT
* * * * *
10734004 TTGGTCCACTTCTTTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCATTTTTCTGT
1 TTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTTTCTGT
*
10734069 ATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTTGTATTGAGCTTTGTTTCATTGATTTGGTCT
66 ATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTTGTTTCATTGATTTGGTCT
*
10734134 ACTTCTCTGTATCTCATCAGGAAGATGACTGCTTCATTGATTTAGTCCACTTCTCTATATCTCAT
131 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAGTCCACTTCTCTATATCTCAT
* *
10734199 CAGAAAGGTGGAT
196 CAGGAAGGCGGAT
** * * **
10734212 TTGGTCCACTTCTCTATATCTCATCAGGAAGATGGTCACTTTATTGCTTTAACCCACTTCTCCAT
1 TTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTTTCTGT
* * * * * *
10734277 ATCTCATCAGGAAGATGGGGCTCGAAGTCTTATTCGTATTGAGTTTTGCTTCATTGATTTGGTCA
66 ATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTTGTTTCATTGATTTGGTCT
*
10734342 ACTTCTCTGTATCTCATAAGGAAGATG
131 ACTTCTCTGTATCTCATCAGGAAGATG
10734369 TCCTTTTGAA
Statistics
Matches: 692, Mismatches: 77, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
205 2 0.00
206 198 0.29
207 5 0.01
208 486 0.70
209 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.39
Consensus pattern (208 bp):
TTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTTTCTGT
ATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTTGTTTCATTGATTTGGTCT
ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAGTCCACTTCTCTATATCTCAT
CAGGAAGGCGGAT
Found at i:10734076 original size:85 final size:85
Alignment explanation
Indices: 10733916--10734082 Score: 210
Period size: 85 Copynumber: 2.0 Consensus size: 85
10733906 TTGTTTCATT
* * *
10733916 GATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGATTGCTTCATTAATTTAGTCCACTTCTC
1 GATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGATCGCTTCATTAATTTAGCCCACTTCTC
*
10733981 TATATTTCATCAGGAAGGCG
66 TATATCTCATCAGGAAGGCG
* * * ** * *
10734001 GATTTGGTCCACTTCTTTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTT-GACCCATTTTT
1 GATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGATCGCTTCATTAATTTAG-CCCACTTCT
*
10734065 CTGTATCTCATCAGGAAG
65 CTATATCTCATCAGGAAG
10734083 ATGGGGTTTG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
84 1 0.01
85 68 0.99
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGATCGCTTCATTAATTTAGCCCACTTCTC
TATATCTCATCAGGAAGGCG
Found at i:10734269 original size:85 final size:85
Alignment explanation
Indices: 10734124--10734286 Score: 229
Period size: 85 Copynumber: 1.9 Consensus size: 85
10734114 TTGTTTCATT
* * * **
10734124 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTGCTTCATTGATTTAGTCCACTTCTC
1 GATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACTACTTCATTGATTTAACCCACTTCTC
*
10734189 TATATCTCATCAGAAAGGTG
66 CATATCTCATCAGAAAGGTG
* * *
10734209 GATTTGGTCCACTTCTCTATATCTCATCAGGAAGATG-GTCACTTTATTGCTTTAACCCACTTCT
1 GATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACT-ACTTCATTGATTTAACCCACTTCT
10734273 CCATATCTCATCAG
65 CCATATCTCATCAG
10734287 GAAGATGGGG
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
84 1 0.01
85 67 0.99
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.37
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACTACTTCATTGATTTAACCCACTTCTC
CATATCTCATCAGAAAGGTG
Found at i:10739463 original size:22 final size:22
Alignment explanation
Indices: 10739418--10739463 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
10739408 CTTGCCCTCC
* *
10739418 TTCTTTCTTGCTTTCTTTCTAG
1 TTCTTTCTTCCTTTCTTTCGAG
10739440 TTCTTTCTTCCTTTGCTTT-GAG
1 TTCTTTCTTCCTTT-CTTTCGAG
10739462 TT
1 TT
10739464 TGGTTTATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.04, C:0.22, G:0.11, T:0.63
Consensus pattern (22 bp):
TTCTTTCTTCCTTTCTTTCGAG
Found at i:10746175 original size:17 final size:17
Alignment explanation
Indices: 10746140--10746181 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
10746130 GGAAAAAGGA
*
10746140 GTTACAAGAATATGAAAG
1 GTTA-AAGAAAATGAAAG
*
10746158 GTTAAAGAAAATGGAAG
1 GTTAAAGAAAATGAAAG
10746175 GTTAAAG
1 GTTAAAG
10746182 GTCAAGGGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.50, C:0.02, G:0.26, T:0.21
Consensus pattern (17 bp):
GTTAAAGAAAATGAAAG
Found at i:10750730 original size:17 final size:17
Alignment explanation
Indices: 10750694--10750736 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
10750684 AGGAAAAAGT
*
10750694 GGTTACAAGAATATGAAA
1 GGTTA-AAGAAGATGAAA
*
10750712 GGTTAAAGAAGATGGAA
1 GGTTAAAGAAGATGAAA
10750729 GGTTAAAG
1 GGTTAAAG
10750737 GTCAAGGGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.47, C:0.02, G:0.30, T:0.21
Consensus pattern (17 bp):
GGTTAAAGAAGATGAAA
Found at i:10750736 original size:24 final size:24
Alignment explanation
Indices: 10750709--10750756 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
10750699 CAAGAATATG
* *
10750709 AAAGGTTAAAGAAGATGGAAGGTT
1 AAAGGTCAAAGAAGATGAAAGGTT
* *
10750733 AAAGGTCAAGGGAGATGAAAGGTT
1 AAAGGTCAAAGAAGATGAAAGGTT
10750757 GAACATCCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.35, T:0.19
Consensus pattern (24 bp):
AAAGGTCAAAGAAGATGAAAGGTT
Found at i:10751225 original size:30 final size:30
Alignment explanation
Indices: 10751173--10751484 Score: 312
Period size: 30 Copynumber: 10.5 Consensus size: 30
10751163 AATTTTGACT
* * *
10751173 GTTAAAATGT-AATTTAGGAAAGTTTAGAG
1 GTTAAAATGTGATTTTGGGAAAGTTTAGGG
* *
10751202 GTTAAAATATGCTTTTGGGAAAGTTTAGGG
1 GTTAAAATGTGATTTTGGGAAAGTTTAGGG
* * *
10751232 GTTAAAATGTAATTTTGGAAAAGTTTAAGG
1 GTTAAAATGTGATTTTGGGAAAGTTTAGGG
* *
10751262 GTTAAAATGTAATTTTAGGAAAGTTT-GGG
1 GTTAAAATGTGATTTTGGGAAAGTTTAGGG
*
10751291 GTCAAAATGTGCA-TTTGGGAAAGTTTAGGG
1 GTTAAAATGTG-ATTTTGGGAAAGTTTAGGG
* *
10751321 GTTAAAATGTGCTTTTGAGAAAGTTTAGGG
1 GTTAAAATGTGATTTTGGGAAAGTTTAGGG
* * * * *
10751351 GTTAAAATGTAATTTTAGAAAATTTTA-AG
1 GTTAAAATGTGATTTTGGGAAAGTTTAGGG
* * * *
10751380 GTTAAAATGTAATTTTAGAAAAG-TTCGAGG
1 GTTAAAATGTGATTTTGGGAAAGTTTAG-GG
* * *
10751410 ATCAAAATGTGATTTTGGAAAAGTTTAGGG
1 GTTAAAATGTGATTTTGGGAAAGTTTAGGG
* *
10751440 GTTAAATTGTGATTTTGAGAAAGTTTA-GG
1 GTTAAAATGTGATTTTGGGAAAGTTTAGGG
*
10751469 GTCAAAATGTGATTTT
1 GTTAAAATGTGATTTT
10751485 AGGACAGCTT
Statistics
Matches: 235, Mismatches: 41, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
28 2 0.01
29 71 0.30
30 159 0.68
31 3 0.01
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.37
Consensus pattern (30 bp):
GTTAAAATGTGATTTTGGGAAAGTTTAGGG
Found at i:10751267 original size:89 final size:90
Alignment explanation
Indices: 10751140--10751514 Score: 372
Period size: 89 Copynumber: 4.2 Consensus size: 90
10751130 TGAAGTATTT
* * * * **
10751140 GGGGTTAAAATGCAATTTTGGAGAATTTTGACTGTTAAAATGTAA-TTTAGGAAAGTTTAGAGGT
1 GGGGTTAAAATGTAATTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTAGGAAAGTTTAGAGGT
* * * *
10751204 TAAAATATGCTTTTGGGAAAGTTTA
66 CAAAATGTGATTTTAGGAAAGTTTA
*
10751229 GGGGTTAAAATGTAATTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTAGGAAAGTTT-GGGGT
1 GGGGTTAAAATGTAATTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTAGGAAAGTTTAGAGGT
*
10751293 CAAAATGTGCA-TTTGGGAAAGTTTA
66 CAAAATGTG-ATTTTAGGAAAGTTTA
** * * *
10751318 GGGGTTAAAATGTGCTTTT-GAGAAAGTTTAGGGGTTAAAATGTAATTTTAGAAAATTTTA-AGG
1 GGGGTTAAAATGTAATTTTGGA-AAAGTTTAAGGGTTAAAATGTAATTTTAGGAAAGTTTAGAGG
* * * *
10751381 TTAAAATGTAATTTTAGAAAAG-TTC
65 TCAAAATGTGATTTTAGGAAAGTTTA
* * * * * *
10751406 GAGGATCAAAATGTGATTTTGGAAAAGTTTAGGGGTTAAATTGTGATTTT-GAGAAAGTTTAG-G
1 G-GGGTTAAAATGTAATTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTAG-GAAAGTTTAGAG
* *
10751469 GTCAAAATGTGATTTTAGGACAGCTT-
64 GTCAAAATGTGATTTTAGGAAAGTTTA
*
10751495 GAGGGTCAAAATGTAATTTT
1 G-GGGTTAAAATGTAATTTT
10751515 CAGGTAAAAC
Statistics
Matches: 242, Mismatches: 34, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
88 7 0.03
89 218 0.90
90 17 0.07
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (90 bp):
GGGGTTAAAATGTAATTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTAGGAAAGTTTAGAGGT
CAAAATGTGATTTTAGGAAAGTTTA
Found at i:10751514 original size:59 final size:57
Alignment explanation
Indices: 10751141--10751514 Score: 313
Period size: 59 Copynumber: 6.3 Consensus size: 57
10751131 GAAGTATTTG
* * ** * * *
10751141 GGGTTAAAATGCAATTTTG-GAGAATTTTGACTGTTAAAATGTAATTTAGGAAAGTTTA
1 GGGTTAAAATGTAATTTTGAGA-AAGTTT-AGGGTCAAAATGTGATTTTGGAAAGTTTA
* ** * * *
10751199 GAGGTTAAAATATGCTTTTGGGAAAGTTTAGGGGTTAAAATGTAATTTTGGAAAAGTTTAA
1 G-GGTTAAAATGTAATTTTGAGAAAGTTTA-GGGTCAAAATGTGATTTTGG-AAAGTTT-A
* *
10751260 GGGTTAAAATGTAATTTT-AGGAAAGTTTGGGGTCAAAATGTGCATTTGGGAAAGTTTA
1 GGGTTAAAATGTAATTTTGA-GAAAGTTTAGGGTCAAAATGTG-ATTTTGGAAAGTTTA
** * * * *
10751318 GGGGTTAAAATGTGCTTTTGAGAAAGTTTAGGGGTTAAAATGTAATTTTAGAAAATTTTA
1 -GGGTTAAAATGTAATTTTGAGAAAGTTTA-GGGTCAAAATGTGATTTT-GGAAAGTTTA
* * *
10751378 AGGTTAAAATGTAATTTT-AGAAAAGTTCGAGGATCAAAATGTGATTTTGGAAAAGTTTA
1 GGGTTAAAATGTAATTTTGAG-AAAGTT-TAGGGTCAAAATGTGATTTTGG-AAAGTTTA
* * * *
10751437 GGGGTTAAATTGTGATTTTGAGAAAGTTTAGGGTCAAAATGTGATTTTAGGACAGCTTGA
1 -GGGTTAAAATGTAATTTTGAGAAAGTTTAGGGTCAAAATGTGATTTT-GGAAAG-TTTA
*
10751497 GGGTCAAAATGTAATTTT
1 GGGTTAAAATGTAATTTT
10751515 CAGGTAAAAC
Statistics
Matches: 255, Mismatches: 43, Indels: 35
0.77 0.13 0.11
Matches are distributed among these distances:
58 6 0.02
59 161 0.63
60 84 0.33
61 4 0.02
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (57 bp):
GGGTTAAAATGTAATTTTGAGAAAGTTTAGGGTCAAAATGTGATTTTGGAAAGTTTA
Found at i:10753063 original size:18 final size:18
Alignment explanation
Indices: 10753042--10753077 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
10753032 ATTTTGGTTT
*
10753042 AATTTTGTATTTGGACAC
1 AATTTTGCATTTGGACAC
10753060 AATTTTGCATTTGGACAC
1 AATTTTGCATTTGGACAC
10753078 TTTAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (18 bp):
AATTTTGCATTTGGACAC
Found at i:10758604 original size:2 final size:2
Alignment explanation
Indices: 10758597--10758623 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10758587 TTAAATCCTT
10758597 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
10758624 CTACCTCTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10758871 original size:40 final size:41
Alignment explanation
Indices: 10758810--10758918 Score: 159
Period size: 40 Copynumber: 2.7 Consensus size: 41
10758800 AATGTAAAAT
*
10758810 AATATTTTCAGT-TGAGGAAAATCCTCTGACTGTTGCAG-AA
1 AATATTTTCA-TCTGAGAAAAATCCTCTGACTGTTGCAGAAA
* *
10758850 AATATTTTCATCTGTGAAAAATCCTCTGATTGTTGCAGTAAA
1 AATATTTTCATCTGAGAAAAATCCTCTGACTGTTGCAG-AAA
10758892 AATATTTTCATCTGAGAAAAATCCTCT
1 AATATTTTCATCTGAGAAAAATCCTCT
10758919 ACTATTTTTA
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
39 1 0.02
40 33 0.53
42 28 0.45
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36
Consensus pattern (41 bp):
AATATTTTCATCTGAGAAAAATCCTCTGACTGTTGCAGAAA
Found at i:10763922 original size:21 final size:21
Alignment explanation
Indices: 10763898--10763945 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
10763888 ACCAAATTTG
* *
10763898 CCAGAACCAGTTTCACCAGAA
1 CCAGAACCAATTTCACAAGAA
*
10763919 CCAGAACTAATTTCACAAGAA
1 CCAGAACCAATTTCACAAGAA
*
10763940 CTAGAA
1 CCAGAA
10763946 GTGGTGAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.44, C:0.27, G:0.12, T:0.17
Consensus pattern (21 bp):
CCAGAACCAATTTCACAAGAA
Found at i:10768472 original size:87 final size:86
Alignment explanation
Indices: 10768368--10768528 Score: 218
Period size: 87 Copynumber: 1.9 Consensus size: 86
10768358 CATGCATAAC
* * *
10768368 GTTGAGTTCTTACTCTTAATGACTTCATATCCCA-AGATTTGGGTGGTCCAATTGA-AAGAGACT
1 GTTGAGTTATTACTCTTAATGAATTCAAATCCCAGAG-TTTGGGTGGTCCAATTGAGAAG-GACT
*
10768431 TGATGAATTCAACGACATGAGAG
64 TAATGAATTCAACGACATGAGAG
* * *
10768454 GTTGAGTTTATTATTCTTAATGAATTCAAATCCCAGAGTTTGGGTGGTCCTATTGAGATGGACTT
1 GTTGAG-TTATTACTCTTAATGAATTCAAATCCCAGAGTTTGGGTGGTCCAATTGAGAAGGACTT
10768519 AATGAATTCA
65 AATGAATTCA
10768529 CCGAACTTAA
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
86 6 0.09
87 55 0.85
88 4 0.06
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (86 bp):
GTTGAGTTATTACTCTTAATGAATTCAAATCCCAGAGTTTGGGTGGTCCAATTGAGAAGGACTTA
ATGAATTCAACGACATGAGAG
Found at i:10775954 original size:337 final size:337
Alignment explanation
Indices: 10775339--10775990 Score: 980
Period size: 337 Copynumber: 1.9 Consensus size: 337
10775329 ACTACTGCTA
** * * * *
10775339 GTGTTTGGAATGTGGGGTTGTTGTCCCAATTGTTCCCTGAGGAGGAATTGGACTGTATTTCGGCA
1 GTGTTTGGAATGTGGGGTTACTATCCCAATTGTTCCCTAAGGAGGAATTAGACTGTATTTCAGCA
* *
10775404 TCGCACCCTCCCAATGAAGCCTTAAGGTGTGACAAAATCATATGGAAGATGAGCACCAATGGAGC
66 TCACACCCTCCCAATGAAGCCTTAAGGTATGACAAAATCATATGGAAGATGAGCACCAATGGAGC
*
10775469 CTATTTAGTCCGTATAGCGTATAGAAGTTTGGAAATGATGGATAATCCGAGTGGTCCGAATGGGT
131 CTATTTAGTCCGTACAGCGTATAGAAGTTTGGAAATGATGGATAATCCGAGTGGTCCGAATGGGT
* * * * * * *
10775534 GGACTACGATTTGGGAAAGTTCCTTGCCTCCGCGTATCCAGCATTTCCTTTGGCTCGTTCGCAGG
196 GGACTACAATTTGGGAAAGTTCCTTGCCGCCGCATATCCAACATTTCCTTTAGCTCGTTCACAGA
* * * *
10775599 TAGAGGTTGCTTACAAATTCAGAGAGGGTCCGTTGATGCATGACTGATGATGCTTGTTGTATGCG
261 CAAAGGTTGCTCACAAATTCAGAGAGGGTCCGTCGATGCATGACTGATGATGCTTGTTGTATGCG
10775664 ATGAGCACCAAT
326 ATGAGCACCAAT
* * * *
10775676 GTGTTTGGAATGTGGGGTTACTATCCCAATTGTTCCCTAAGTAGGCATTAGACTGTATTTTAGCC
1 GTGTTTGGAATGTGGGGTTACTATCCCAATTGTTCCCTAAGGAGGAATTAGACTGTATTTCAGCA
* * *
10775741 TCACACCTTTCCAATGAAGCCTTAGGGTATGACAAAATCATATGGAAGATGAGCACCAATGGAGC
66 TCACACCCTCCCAATGAAGCCTTAAGGTATGACAAAATCATATGGAAGATGAGCACCAATGGAGC
* * * *
10775806 CTATTTAGTCCGTACAGTGTATAGGAGTTTGGAAATGATGGATAATCTGAGTGGTCTGAATGGGT
131 CTATTTAGTCCGTACAGCGTATAGAAGTTTGGAAATGATGGATAATCCGAGTGGTCCGAATGGGT
* *
10775871 GGACTACAATTTGGGAAAGTTCCTTGTCGCCGCATATCCAACATTTCCTTTATCTCGTTCACAGA
196 GGACTACAATTTGGGAAAGTTCCTTGCCGCCGCATATCCAACATTTCCTTTAGCTCGTTCACAGA
* * *
10775936 CAAAGGTTGCTCACAAATTTAGATAGGGTTCGTCGATGCATGACTGATGATGCTT
261 CAAAGGTTGCTCACAAATTCAGAGAGGGTCCGTCGATGCATGACTGATGATGCTT
10775991 ACTGTGTGCG
Statistics
Matches: 279, Mismatches: 36, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
337 279 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (337 bp):
GTGTTTGGAATGTGGGGTTACTATCCCAATTGTTCCCTAAGGAGGAATTAGACTGTATTTCAGCA
TCACACCCTCCCAATGAAGCCTTAAGGTATGACAAAATCATATGGAAGATGAGCACCAATGGAGC
CTATTTAGTCCGTACAGCGTATAGAAGTTTGGAAATGATGGATAATCCGAGTGGTCCGAATGGGT
GGACTACAATTTGGGAAAGTTCCTTGCCGCCGCATATCCAACATTTCCTTTAGCTCGTTCACAGA
CAAAGGTTGCTCACAAATTCAGAGAGGGTCCGTCGATGCATGACTGATGATGCTTGTTGTATGCG
ATGAGCACCAAT
Found at i:10781377 original size:17 final size:17
Alignment explanation
Indices: 10781355--10781388 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
10781345 GATCTTTCTT
10781355 AGGTGGATATATACATG
1 AGGTGGATATATACATG
10781372 AGGTGGATATATACATG
1 AGGTGGATATATACATG
10781389 TTTTATATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.29
Consensus pattern (17 bp):
AGGTGGATATATACATG
Found at i:10782966 original size:39 final size:39
Alignment explanation
Indices: 10782915--10783207 Score: 288
Period size: 39 Copynumber: 7.5 Consensus size: 39
10782905 CTAAATCGGT
* * * * *
10782915 AGTGACATTGTAAACACTATAATGTTATATTGAA-TCGAC
1 AGTGACACTGTAAACACTACAATGATATACTGAACT-GGC
* * *
10782954 AATGACACTGTAAACACTACAAAGTTATACTGAACTGGC
1 AGTGACACTGTAAACACTACAATGATATACTGAACTGGC
* **
10782993 GGTGACACTAAAAACACTACAATGATATACTGAACTGGC
1 AGTGACACTGTAAACACTACAATGATATACTGAACTGGC
*
10783032 AGTGACACTGTAAACACTACAATGCTATACTGAACTGG-
1 AGTGACACTGTAAACACTACAATGATATACTGAACTGGC
** *
10783070 AGGTGACACTAAAAATACTACAATGATATACTGAACTGGC
1 A-GTGACACTGTAAACACTACAATGATATACTGAACTGGC
* *
10783110 AGTGACACTGTAAACACTACAATGCTATACTGAATTGGC
1 AGTGACACTGTAAACACTACAATGATATACTGAACTGGC
* * * * * * *
10783149 -GATGATATTGTAAACA-TCACAACGCTATACTGAAGTAGT
1 AG-TGACACTGTAAACACT-ACAATGATATACTGAACTGGC
* *
10783188 AGTGACATTGTAAATACTAC
1 AGTGACACTGTAAACACTAC
10783208 TAGACTAATA
Statistics
Matches: 214, Mismatches: 33, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
38 3 0.01
39 207 0.97
40 4 0.02
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (39 bp):
AGTGACACTGTAAACACTACAATGATATACTGAACTGGC
Found at i:10783041 original size:78 final size:78
Alignment explanation
Indices: 10782956--10783149 Score: 343
Period size: 78 Copynumber: 2.5 Consensus size: 78
10782946 GAATCGACAA
* *
10782956 TGACACTGTAAACACTACAAAGTTATACTGAACTGGCGGTGACACTAAAAACACTACAATGATAT
1 TGACACTGTAAACACTACAATGCTATACTGAACTGGCGGTGACACTAAAAACACTACAATGATAT
10783021 ACTGAACTGGCAG
66 ACTGAACTGGCAG
* *
10783034 TGACACTGTAAACACTACAATGCTATACTGAACTGGAGGTGACACTAAAAATACTACAATGATAT
1 TGACACTGTAAACACTACAATGCTATACTGAACTGGCGGTGACACTAAAAACACTACAATGATAT
10783099 ACTGAACTGGCAG
66 ACTGAACTGGCAG
*
10783112 TGACACTGTAAACACTACAATGCTATACTGAATTGGCG
1 TGACACTGTAAACACTACAATGCTATACTGAACTGGCG
10783150 ATGATATTGT
Statistics
Matches: 110, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 110 1.00
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (78 bp):
TGACACTGTAAACACTACAATGCTATACTGAACTGGCGGTGACACTAAAAACACTACAATGATAT
ACTGAACTGGCAG
Found at i:10783106 original size:117 final size:117
Alignment explanation
Indices: 10782915--10783182 Score: 317
Period size: 117 Copynumber: 2.3 Consensus size: 117
10782905 CTAAATCGGT
* * * ** *
10782915 AGTGACATTGTAAACACTATAATGTTATATTGAATCGACAATGACACTGTAAACACTACAAAGTT
1 AGTGACATTGTAAACACTACAATGCTATACTGAATCGACAATGACACTAAAAACACTACAAAGAT
*
10782980 ATACTGAACTGGCGGTGACACTAAAAACACTACAATGATATACTGAACTGGC
66 ATACTGAACTGGCAGTGACACTAAAAACACTACAATGATATACTGAACTGGC
* * ** * *
10783032 AGTGACACTGTAAACACTACAATGCTATACTGAACTGGA-GGTGACACTAAAAATACTACAATGA
1 AGTGACATTGTAAACACTACAATGCTATACTGAA-TCGACAATGACACTAAAAACACTACAAAGA
** * *
10783096 TATACTGAACTGGCAGTGACACTGTAAACACTACAATGCTATACTGAATTGGC
65 TATACTGAACTGGCAGTGACACTAAAAACACTACAATGATATACTGAACTGGC
* *
10783149 -GATGATATTGTAAACA-TCACAACGCTATACTGAA
1 AG-TGACATTGTAAACACT-ACAATGCTATACTGAA
10783183 GTAGTAGTGA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
116 2 0.02
117 123 0.96
118 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (117 bp):
AGTGACATTGTAAACACTACAATGCTATACTGAATCGACAATGACACTAAAAACACTACAAAGAT
ATACTGAACTGGCAGTGACACTAAAAACACTACAATGATATACTGAACTGGC
Found at i:10791177 original size:56 final size:58
Alignment explanation
Indices: 10791042--10791192 Score: 166
Period size: 56 Copynumber: 2.6 Consensus size: 58
10791032 TATATTATGA
* * * *
10791042 TTTTTATT-AATTCATATTTTAATAATAATTATATTAAGAATGTTATTAAATTATATACT
1 TTTTTATTAAATT-ATA-TTTAATAATAATCATATTAAGAATATGATTAAAATATATACT
* * * *
10791101 ATTTTATTAAATTGTTTTTAATAATAATCA-AGTTAA-AATATGATTAAAATATTTA-T
1 TTTTTATTAAATTATATTTAATAATAATCATA-TTAAGAATATGATTAAAATATATACT
*
10791157 TTTTTATTAAATTATATTTAATAATAATCTTATTAA
1 TTTTTATTAAATTATATTTAATAATAATCATATTAA
10791193 AATTTAACAA
Statistics
Matches: 77, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
56 31 0.40
57 17 0.22
58 17 0.22
59 8 0.10
60 4 0.05
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (58 bp):
TTTTTATTAAATTATATTTAATAATAATCATATTAAGAATATGATTAAAATATATACT
Found at i:10792369 original size:30 final size:30
Alignment explanation
Indices: 10792335--10792399 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
10792325 ATTTATTTTA
10792335 TTGTTAATTTTGTTA-TTATTTTAGAGGTAT
1 TTGTTAATTTTGTTACTT-TTTTAGAGGTAT
10792365 TTGTTAATTTTGTTACTTTTTTAGAGGTAT
1 TTGTTAATTTTGTTACTTTTTTAGAGGTAT
10792395 TTGTT
1 TTGTT
10792400 TATTAGGTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 32 0.94
31 2 0.06
ACGTcount: A:0.20, C:0.02, G:0.17, T:0.62
Consensus pattern (30 bp):
TTGTTAATTTTGTTACTTTTTTAGAGGTAT
Done.