Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 57 of 135
Found at i:16395649 original size:35 final size:35
Alignment explanation
Indices: 16395568--16395678 Score: 141
Period size: 35 Copynumber: 3.0 Consensus size: 35
16395558 TCATCCCAAA
16395568 AAAATAAAAAATAAAGAAAAGAAAGAAAGAAAGAAAAAAG
1 AAAA-AAAAAA-AAAG-AAA-AAAGAAA-AAAGAAAAAAG
16395608 AAAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAAG
1 AAAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAAG
* * *
16395643 AAAAAAAGAAAAAGGAAAAAGGAAAAAGAGAAAAAG
1 AAAAAAAAAAAAAGAAAAAAGAAAAAAGA-AAAAAG
16395679 GTGAGGTCAA
Statistics
Matches: 67, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
35 37 0.55
36 13 0.19
37 3 0.04
38 4 0.06
39 6 0.09
40 4 0.06
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (35 bp):
AAAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAAG
Found at i:16395656 original size:28 final size:29
Alignment explanation
Indices: 16395580--16395677 Score: 144
Period size: 29 Copynumber: 3.3 Consensus size: 29
16395570 AATAAAAAAT
16395580 AAAGAAAAGAAAGAAAGAAAGAAAAAAGAAA
1 AAAGAAAA-AAAGAAA-AAAGAAAAAAGAAA
16395611 AAA-AAAAAAAGAAAAAAGAAAAAAGAAA
1 AAAGAAAAAAAGAAAAAAGAAAAAAGAAA
* *
16395639 AAAGAAAAAAAGAAAAAGGAAAAAGGAAA
1 AAAGAAAAAAAGAAAAAAGAAAAAAGAAA
16395668 AAGAGAAAAA
1 AA-AGAAAAA
16395678 GGTGAGGTCA
Statistics
Matches: 63, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
28 17 0.27
29 32 0.51
30 11 0.17
31 3 0.05
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (29 bp):
AAAGAAAAAAAGAAAAAAGAAAAAAGAAA
Found at i:16395669 original size:1 final size:1
Alignment explanation
Indices: 16395565--16395655 Score: 65
Period size: 1 Copynumber: 91.0 Consensus size: 1
16395555 ATTTCATCCC
* * * * * * * * * *
16395565 AAAAAAATAAAAAATAAAGAAAAGAAAGAAAGAAAGAAAAAAGAAAAAAAAAAAAAGAAAAAAGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
16395630 AAAAAGAAAAAAGAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
16395656 GGAAAAAGGA
Statistics
Matches: 64, Mismatches: 26, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 64 1.00
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (1 bp):
A
Found at i:16396779 original size:99 final size:98
Alignment explanation
Indices: 16396693--16397127 Score: 455
Period size: 99 Copynumber: 4.4 Consensus size: 98
16396683 AGACTACAAT
* * * *
16396693 GGCGAACCCGATACCTTAGAAGATGTGACGGGAAGGATTAAGGCCGCAATGACGAATCCGGTACC
1 GGCGAACCCGATACCTTAGAA-ATGTGACGGGAAAGATTAAGGCCGCAACGGCGAATCCAGTACC
* * *
16396758 ATGAAGATATGAAGGGAAAGGTTAAGGCCGCAAC
65 ATGAAAATATAAAGGGAAAGGTTGAGGCCGCAAC
* * * * * * *
16396792 GGGGAACCCGGTACCTTAGAATATGTGATGGGAAGGATTGAGGCCACAACGGCGAATCTAGTACC
1 GGCGAACCCGATACCTTAGAA-ATGTGACGGGAAAGATTAAGGCCGCAACGGCGAATCCAGTACC
*
16396857 ATGAAAATATAAAAGGAAAGGTTGAGGCCGCAAC
65 ATGAAAATATAAAGGGAAAGGTTGAGGCCGCAAC
* * * * * * * *
16396891 GGTGAACCTGGTACCTTAGAAATGTGATGGGAAAGACTGAGGCCGCAACGACGAATCTAGTACCA
1 GGCGAACCCGATACCTTAGAAATGTGACGGGAAAGATTAAGGCCGCAACGGCGAATCCAGTACCA
* * *
16396956 TAAAAATATAAAGGGAAAGGTTAAGGCCGTAAC
66 TGAAAATATAAAGGGAAAGGTTGAGGCCGCAAC
* * * * * *
16396989 GGCTAACCTTG-TCCCTTAGAAGATGTGACGGGAACGATCAAGGCCGCAACGGTGAA-CCTAGTA
1 GGCGAACC-CGATACCTTAGAA-ATGTGACGGGAAAGATTAAGGCCGCAACGGCGAATCC-AGTA
* *
16397052 CCATTG-AAATATAAAAGGAAAGGTTGAGGCCGCAAT
63 CCA-TGAAAATATAAAGGGAAAGGTTGAGGCCGCAAC
* *
16397088 GGCGAA-CCTAGTACCTTAGAAACGTGACGGGAAAGATTAA
1 GGCGAACCCGA-TACCTTAGAAATGTGACGGGAAAGATTAA
16397128 AGTCGTAACG
Statistics
Matches: 283, Mismatches: 47, Indels: 13
0.83 0.14 0.04
Matches are distributed among these distances:
98 102 0.36
99 180 0.64
100 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.17
Consensus pattern (98 bp):
GGCGAACCCGATACCTTAGAAATGTGACGGGAAAGATTAAGGCCGCAACGGCGAATCCAGTACCA
TGAAAATATAAAGGGAAAGGTTGAGGCCGCAAC
Found at i:16396904 original size:148 final size:148
Alignment explanation
Indices: 16396613--16396945 Score: 325
Period size: 148 Copynumber: 2.2 Consensus size: 148
16396603 AGGAAACATG
* * * * *
16396613 GAAATATAAAAGGAAAGGTTGAGGTCGCAATGGCGAACCCGGTACTTTAGAAGATGTGATGGGAA
1 GAAATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTGATGGGAA
* * * * * * * * * *
16396678 GGTTGAGACTACAATGGCGAACCCGATACCTTAGAAGATGTGACGGGAAGGATTAAGGCCGCAAT
66 GGTTGAGACCACAACGGCGAACCAGATACCATAGAAAATATAAAGGAAAGGATTAAGGCCGCAAC
16396743 GACGAATCCGGTACCAT-
131 GACGAATCCGGTACCATA
* * *
16396760 GAAGATATGAAGGGAAAGGTTAAGGCCGCAACGGGGAACCCGGTACCTTAGAATATGTGATGGGA
1 GAA-ATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTGATGGGA
* * *
16396825 AGGATTGAGGCCACAACGGCGAATCTAG-TACCAT-GAAAATATAAAAGGAAAGG-TTGAGGCCG
65 AGG-TTGAGACCACAACGGCGAA-CCAGATACCATAGAAAATAT-AAAGGAAAGGATTAAGGCCG
** *
16396887 CAACGGTGAA-CCTGGTACCTTA
127 CAACGACGAATCC-GGTACCATA
* * ** *
16396909 GAAATGTGATGGGAAAGACTGAGGCCGCAACGACGAA
1 GAAATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAA
16396946 TCTAGTACCA
Statistics
Matches: 149, Mismatches: 31, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
147 5 0.03
148 111 0.74
149 31 0.21
150 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.31, T:0.17
Consensus pattern (148 bp):
GAAATATGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTGATGGGAA
GGTTGAGACCACAACGGCGAACCAGATACCATAGAAAATATAAAGGAAAGGATTAAGGCCGCAAC
GACGAATCCGGTACCATA
Found at i:16397052 original size:197 final size:197
Alignment explanation
Indices: 16396704--16397123 Score: 563
Period size: 197 Copynumber: 2.1 Consensus size: 197
16396694 GCGAACCCGA
* * * * * * *
16396704 TACCTTAGAAGATGTGACGGGAAGGATTAAGGCCGCAATGACGAATCCGGTACCATGAAGATATG
1 TACCTTAGAA-ATGTGACGGGAAAGACTAAGGCCGCAACGACGAATCCAGTACCATAAAAATATA
* * * * **
16396769 AAGGGAAAGGTTAAGGCCGCAACGGGGAACCCGGTACCTTAGAATATGTGATGGGAAGGATTGAG
65 AAGGGAAAGGTTAAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTGACGGGAACGATCAAG
* *
16396834 GCCACAACGGCGAATCTAGTACCA-TGAAAATATAAAAGGAAAGGTTGAGGCCGCAACGGTGAAC
130 GCCACAACGGCGAACCTAGTACCATTG-AAATATAAAAGGAAAGGTTGAGGCCGCAACGGCGAAC
*
16396898 CTGG
194 CTAG
* * *
16396902 TACCTTAGAAATGTGATGGGAAAGACTGAGGCCGCAACGACGAATCTAGTACCATAAAAATATAA
1 TACCTTAGAAATGTGACGGGAAAGACTAAGGCCGCAACGACGAATCCAGTACCATAAAAATATAA
* * ** *
16396967 AGGGAAAGGTTAAGGCCGTAACGGCTAACCTTGTCCCTTAGAAGATGTGACGGGAACGATCAAGG
66 AGGGAAAGGTTAAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTGACGGGAACGATCAAGG
* * *
16397032 CCGCAACGGTGAACCTAGTACCATTGAAATATAAAAGGAAAGGTTGAGGCCGCAATGGCGAACCT
131 CCACAACGGCGAACCTAGTACCATTGAAATATAAAAGGAAAGGTTGAGGCCGCAACGGCGAACCT
16397097 AG
196 AG
*
16397099 TACCTTAGAAACGTGACGGGAAAGA
1 TACCTTAGAAATGTGACGGGAAAGA
16397124 TTAAAGTCGT
Statistics
Matches: 192, Mismatches: 29, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
197 180 0.94
198 12 0.06
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (197 bp):
TACCTTAGAAATGTGACGGGAAAGACTAAGGCCGCAACGACGAATCCAGTACCATAAAAATATAA
AGGGAAAGGTTAAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTGACGGGAACGATCAAGG
CCACAACGGCGAACCTAGTACCATTGAAATATAAAAGGAAAGGTTGAGGCCGCAACGGCGAACCT
AG
Found at i:16397121 original size:49 final size:50
Alignment explanation
Indices: 16396624--16397122 Score: 338
Period size: 49 Copynumber: 10.1 Consensus size: 50
16396614 AAATATAAAA
* * ** * *
16396624 GGAAAGGTTGAGGTCGCAATGGCGAACCCGGTACTTTAGAAGATGTGATG
1 GGAAAGGTTGAGGCCGCAACGGCGAACCTAGTACCTTAGAAGATGTGAAG
* ** * * *
16396674 GG-AAGGTTGAGACTACAATGGCGAACC-CGATACCTTAGAAGATGTGACG
1 GGAAAGGTTGAGGCCGCAACGGCGAACCTAG-TACCTTAGAAGATGTGAAG
* * * * * *
16396723 GG-AAGGATTAAGGCCGCAATGACGAATCC-GGTACCAT-GAAGATATGAAG
1 GGAAAGG-TTGAGGCCGCAACGGCGAA-CCTAGTACCTTAGAAGATGTGAAG
* * ** * *
16396772 GGAAAGGTTAAGGCCGCAACGGGGAACCCGGTACCTTAGAATATGTGATG
1 GGAAAGGTTGAGGCCGCAACGGCGAACCTAGTACCTTAGAAGATGTGAAG
* * * * * * *
16396822 GG-AAGGATTGAGGCCACAACGGCGAATCTAGTACCAT-GAAAATATAAAA
1 GGAAAGG-TTGAGGCCGCAACGGCGAACCTAGTACCTTAGAAGATGTGAAG
* * *
16396871 GGAAAGGTTGAGGCCGCAACGGTGAACCTGGTACCTTAGAA-ATGTGATG
1 GGAAAGGTTGAGGCCGCAACGGCGAACCTAGTACCTTAGAAGATGTGAAG
** * * * * * *
16396920 GGAAAGACTGAGGCCGCAACGACGAATCTAGTACCATA-AAAATATAAAG
1 GGAAAGGTTGAGGCCGCAACGGCGAACCTAGTACCTTAGAAGATGTGAAG
* * * * * *
16396969 GGAAAGGTTAAGGCCGTAACGGCTAACCTTGTCCCTTAGAAGATGTGACG
1 GGAAAGGTTGAGGCCGCAACGGCGAACCTAGTACCTTAGAAGATGTGAAG
* * ** * * * *
16397019 GGAACGATCAAGGCCGCAACGGTGAACCTAGTACCATT-GAA-ATATAAAA
1 GGAAAGGTTGAGGCCGCAACGGCGAACCTAGTACC-TTAGAAGATGTGAAG
* * *
16397068 GGAAAGGTTGAGGCCGCAATGGCGAACCTAGTACCTTAGAA-ACGTGACG
1 GGAAAGGTTGAGGCCGCAACGGCGAACCTAGTACCTTAGAAGATGTGAAG
16397117 GGAAAG
1 GGAAAG
16397123 ATTAAAGTCG
Statistics
Matches: 345, Mismatches: 91, Indels: 27
0.75 0.20 0.06
Matches are distributed among these distances:
48 7 0.02
49 230 0.67
50 103 0.30
51 5 0.01
ACGTcount: A:0.34, C:0.18, G:0.30, T:0.18
Consensus pattern (50 bp):
GGAAAGGTTGAGGCCGCAACGGCGAACCTAGTACCTTAGAAGATGTGAAG
Found at i:16397582 original size:122 final size:121
Alignment explanation
Indices: 16397364--16397696 Score: 425
Period size: 122 Copynumber: 2.7 Consensus size: 121
16397354 TGGGTCGAGT
* * *
16397364 CAAATCAAGGAAGTGGAGCTCAATTTGAGTGAAACTTCAAACCCCATCTTCTTGATGAGATACAG
1 CAAATCAATGAAGTGGAGCTCAATGTGAGTGAAACTTCAAA-CCCATCTTCCTGATGAGATACAG
* * * * *
16397429 AAAAGTGGGTCAGACAATGAAGCGGTCATCTTCTTGGTGAGGTACAGAGAAGTAGAC
65 AGAAGTGGGTCAAACAATGAAGCAGTCATCTTCCTGGTAAGGTACAGAGAAGTAGAC
* ** * * *
16397486 TAAATCAATGAAGCAGAGCTC-ATGTGAGTAAAACTTCGACACCTCATCTTCCTGATGAGATATA
1 CAAATCAATGAAGTGGAGCTCAATGTGAGTGAAACTTC-AAACC-CATCTTCCTGATGAGATACA
16397550 GAGAAGTGGGTCAAACAATGAAGCAGTCATCTTCCTGGTAAGGTACAGAGAAGTAGAC
64 GAGAAGTGGGTCAAACAATGAAGCAGTCATCTTCCTGGTAAGGTACAGAGAAGTAGAC
* * * * *
16397608 CAAATTAATAAAGTGGAGCTCAATGTGAGTGAAACTTCAAATCCCATCTTTCTGGTGAGGTACAG
1 CAAATCAATGAAGTGGAGCTCAATGTGAGTGAAACTTCAAA-CCCATCTTCCTGATGAGATACAG
* *
16397673 AGAAGTAGGTCAAAATAATGAAGC
65 AGAAGTGGGTC-AAACAATGAAGC
16397697 CGAGCTTAAC
Statistics
Matches: 179, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
121 16 0.09
122 135 0.75
123 28 0.16
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (121 bp):
CAAATCAATGAAGTGGAGCTCAATGTGAGTGAAACTTCAAACCCATCTTCCTGATGAGATACAGA
GAAGTGGGTCAAACAATGAAGCAGTCATCTTCCTGGTAAGGTACAGAGAAGTAGAC
Found at i:16397885 original size:114 final size:114
Alignment explanation
Indices: 16397682--16397896 Score: 340
Period size: 114 Copynumber: 1.9 Consensus size: 114
16397672 GAGAAGTAGG
* * * * *
16397682 TCAAAATAATGAAGCCGAGCTTAACGTCCCTGAGGATACAGTGGAGTGGAGTGAGACTTCAAATC
1 TCAAAACAACGAAGCCGAGCTCAACGTCCCTAAGGATACAATGGAGTGGAGTGAGACTTCAAATC
* * *
16397747 CCATCTTCCTGGTGAGGTATAGAGAAGTGGGTCAAAGCAGTGTGTTGAA
66 CCATCTTCCTAGTGAGGTACAGAGAAGTAGGTCAAAGCAGTGTGTTGAA
*
16397796 TCAAAACAACGAAGCTGAGCTCAACGTCCCTAAGGATACAATGGAGTGGAGTGAGACTTCAAATC
1 TCAAAACAACGAAGCCGAGCTCAACGTCCCTAAGGATACAATGGAGTGGAGTGAGACTTCAAATC
*
16397861 CCATCTTCTTAGTGAGGTACAGAGAAGTAGGTCAAA
66 CCATCTTCCTAGTGAGGTACAGAGAAGTAGGTCAAA
16397897 ACAAATAGAA
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
114 91 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (114 bp):
TCAAAACAACGAAGCCGAGCTCAACGTCCCTAAGGATACAATGGAGTGGAGTGAGACTTCAAATC
CCATCTTCCTAGTGAGGTACAGAGAAGTAGGTCAAAGCAGTGTGTTGAA
Found at i:16400643 original size:51 final size:51
Alignment explanation
Indices: 16400567--16400669 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
16400557 ATTAACTCAA
16400567 AATAAAAGATTATTTTTCGTGAGATTTAAATACCATCAAATCGTTCTATTT
1 AATAAAAGATTATTTTTCGTGAGATTTAAATACCATCAAATCGTTCTATTT
16400618 AATAAAAGATTATTTTTCGTGAGATTTAAATACCATCAAATCGTTCTATTT
1 AATAAAAGATTATTTTTCGTGAGATTTAAATACCATCAAATCGTTCTATTT
16400669 A
1 A
16400670 CACGATTAAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.41
Consensus pattern (51 bp):
AATAAAAGATTATTTTTCGTGAGATTTAAATACCATCAAATCGTTCTATTT
Found at i:16401717 original size:4 final size:4
Alignment explanation
Indices: 16401708--16401775 Score: 127
Period size: 4 Copynumber: 17.0 Consensus size: 4
16401698 TGGGATTGGA
*
16401708 ACAT ACAT ACAT ACAT ACAT ACAA ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
16401756 ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT
16401776 GCATGCATAT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 62 1.00
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:16421230 original size:85 final size:85
Alignment explanation
Indices: 16421075--16421241 Score: 201
Period size: 85 Copynumber: 2.0 Consensus size: 85
16421065 CAAACCCCTA
* * * ** * * *
16421075 TCTTCTTGATGAGATACAGAGAAGTGGGTTAAAGCAATAAAGTGGTCATCTTCTTGATGATACGC
1 TCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATAAAGCAGTCATCTTCCTGATGAGACAC
16421140 AGAGAAGT-GAACCAAATTCG
66 AGAGAAGTAG-ACCAAATTCG
* * * *
16421160 TCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCAGTCATCTTCCTGATGAGATAC
1 TCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATAAAGCAGTCATCTTCCTGATGAGACAC
*
16421225 TGAGAAGTAGACCAAAT
66 AGAGAAGTAGACCAAAT
16421242 CGATGAAGTG
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
85 67 0.99
86 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.26
Consensus pattern (85 bp):
TCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATAAAGCAGTCATCTTCCTGATGAGACAC
AGAGAAGTAGACCAAATTCG
Found at i:16421296 original size:209 final size:206
Alignment explanation
Indices: 16420934--16421600 Score: 901
Period size: 209 Copynumber: 3.2 Consensus size: 206
16420924 GCAATAGAGT
* *
16420934 GAAGTGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAATGAGGCGGTCA
1 GAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCGGTCA
* * *
16420999 TCTTCTTGATGAGATACTAAGAAGTAGACCAAATCGATGAAGCGAAGCTCAATGTGAGTGAAACT
66 TCTTCCTGATGAGATACTGAGAAGTAGACCAAATCGATGAAGAGAAGCTCAATGTGAGTGAAACT
* * *
16421064 TCAAACCCCTATCTTCTTGATGAGATACAGAGAAGTGGGTTAAAGCAATAAAGTGGTCATCTTCT
131 TCAAACCCC-ATCTTCCTGATGAGATACAGAGAAGTGGGTTAAAGCAATAAAGCGGTCACCTTCT
16421129 TGATGATACGCAGA
195 TGATGATA--CAGA
* *
16421143 GAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCAGTCA
1 GAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCGGTCA
* *
16421208 TCTTCCTGATGAGATACTGAGAAGTAGACCAAATCGATGAAGTGAAGCTCAATATGAGTGAAACT
66 TCTTCCTGATGAGATACTGAGAAGTAGACCAAATCGATGAAGAGAAGCTCAATGTGAGTGAAACT
** * *
16421273 TCAAACCTCCATCTTCCTGATGAGATACAGAGAAGTCAGTCAAAGTAATAAAGCGGTCACCTT-T
131 TCAAACC-CCATCTTCCTGATGAGATACAGAGAAGTGGGTTAAAGCAATAAAGCGGTCACCTTCT
* *
16421337 CAGATGAGATACAAA
195 -TGAT--GATACAGA
* * *
16421352 GAAGTGAACCAAATCCGTCTTCTTGATGAGATACAAAGAAGTGGATAAAAATAATGAGGCGGTCA
1 GAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCGGTCA
* * * *
16421417 TCTTCCTTATGAGATA-TAGAGAAGTAGACCAATTCCATGAA-ACAGAGCTCAATGTGAGTGAAA
66 TCTTCCTGATGAGATACT-GAGAAGTAGACCAAATCGATGAAGAGA-AGCTCAATGTGAGTGAAA
* * * *
16421480 CTTCCAACGCCCATCTTTCTGATGAGATACAGAGAAGTGGG-TAAGGCAATAAAGCGATCACCTT
129 CTTCAAAC-CCCATCTTCCTGATGAGATACAGAGAAGTGGGTTAAAGCAATAAAGCGGTCACCTT
*
16421544 CCTGATAAGATACAGA
193 CTTGAT--GATACAGA
* * *
16421560 GAAGTGAACCAAATCCGTCTTTCTGATTAAATACAGAGAAG
1 GAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAG
16421601 CGGGTTAGAC
Statistics
Matches: 405, Mismatches: 45, Indels: 17
0.87 0.10 0.04
Matches are distributed among these distances:
208 69 0.17
209 329 0.81
210 3 0.01
211 4 0.01
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (206 bp):
GAAGTGAACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAATAATGAGGCGGTCA
TCTTCCTGATGAGATACTGAGAAGTAGACCAAATCGATGAAGAGAAGCTCAATGTGAGTGAAACT
TCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTTAAAGCAATAAAGCGGTCACCTTCTT
GATGATACAGA
Found at i:16421639 original size:84 final size:84
Alignment explanation
Indices: 16421493--16421658 Score: 201
Period size: 84 Copynumber: 2.0 Consensus size: 84
16421483 CCAACGCCCA
* * *
16421493 TCTTTCTGATGAGATACAGAGAAGTGGGTAAGGCAATAAAGCGATCACCTTCCTGATAAGATACA
1 TCTTTCTGATGAAATACAGAGAAGCGGGTAAGACAATAAAGCGATCACCTTCCTGATAAGATACA
*
16421558 GAGAAGTGAACCAAATCCG
66 GAAAAGTGAACCAAATCCG
* * * * * *
16421577 TCTTTCTGATTAAATACAGAGAAGCGGGTTAGACAATGAAA-CGGTCATC-TCTCTGGTGAGATA
1 TCTTTCTGATGAAATACAGAGAAGCGGGTAAGACAAT-AAAGCGATCACCTTC-CTGATAAGATA
*
16421640 CAGAAAAGTTAACCAAATC
64 CAGAAAAGTGAACCAAATC
16421659 AATGAAATAA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
83 2 0.03
84 64 0.93
85 3 0.04
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.23
Consensus pattern (84 bp):
TCTTTCTGATGAAATACAGAGAAGCGGGTAAGACAATAAAGCGATCACCTTCCTGATAAGATACA
GAAAAGTGAACCAAATCCG
Found at i:16426519 original size:25 final size:25
Alignment explanation
Indices: 16426461--16426521 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
16426451 GAATCAATTC
*
16426461 TAATATTAATATATCAATAAATATT
1 TAATATTAATATATCAAAAAATATT
* * *
16426486 TTATTTTAATAT-TTAAAAAATATT
1 TAATATTAATATATCAAAAAATATT
16426510 TAAATATTAATA
1 T-AATATTAATA
16426522 ATAAATATTA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
24 11 0.38
25 18 0.62
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
TAATATTAATATATCAAAAAATATT
Found at i:16426529 original size:21 final size:21
Alignment explanation
Indices: 16426487--16426543 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
16426477 ATAAATATTT
*
16426487 TATTTTAATATT--TAAAAAA
1 TATTTAAATATTAATAAAAAA
*
16426506 TATTTAAATATTAATAATAAA
1 TATTTAAATATTAATAAAAAA
16426527 TA-TTATAATATTCAATA
1 TATTTA-AATATT-AATA
16426544 TTATTAAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 11 0.34
20 3 0.09
21 14 0.44
22 4 0.12
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
TATTTAAATATTAATAAAAAA
Found at i:16426611 original size:13 final size:12
Alignment explanation
Indices: 16426570--16426625 Score: 51
Period size: 13 Copynumber: 4.5 Consensus size: 12
16426560 TTTAATCATA
*
16426570 TAATAAATTA-T
1 TAATATATTATT
*
16426581 TAATATAATTAATA
1 TAATAT-ATT-ATT
16426595 TAATATATTATTT
1 TAATATATTA-TT
*
16426608 TAATAAATTATT
1 TAATATATTATT
16426620 TAATAT
1 TAATAT
16426626 TGTAATTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
11 5 0.14
12 11 0.31
13 14 0.39
14 6 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TAATATATTATT
Found at i:16426619 original size:16 final size:19
Alignment explanation
Indices: 16426561--16426625 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 19
16426551 ACATACATAT
16426561 TTAATCATA-TAATAAATTA
1 TTAAT-ATATTAATAAATTA
16426580 TTAATATAATTAATATAATATA
1 TTAATAT-ATTAATA-AAT-TA
16426602 TT-AT-T-TTAATAAATTA
1 TTAATATATTAATAAATTA
16426618 TTTAATAT
1 -TTAATAT
16426626 TGTAATTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
16 2 0.05
17 5 0.13
18 10 0.26
19 7 0.18
20 6 0.15
21 5 0.13
22 4 0.10
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
TTAATATATTAATAAATTA
Found at i:16430788 original size:3 final size:3
Alignment explanation
Indices: 16430780--16430816 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
16430770 TTTGACAACC
16430780 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
16430817 TTGCCCTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:16432610 original size:114 final size:111
Alignment explanation
Indices: 16432371--16432653 Score: 307
Period size: 114 Copynumber: 2.5 Consensus size: 111
16432361 GAAAATTCTG
* * * * * * *
16432371 GATCTTTTGATGAAGAAGAAGGCAAGCG-TGCTAATAGAGATAGGAGCGAAGAAAGTGAGAGAAT
1 GATCTTCTGATGAAGAAGATGACAAGCGTTCCT-ATAGAGATAGAAGGGAAGAAAGAGAGAGAAT
* *
16432435 TCCTGCTGATAATGATGGTAAGGATAGGCAGAGAGAAAAACGTCCTA
65 TCATGCTGATAATGATGGTAAGGATAGGCAGAGAGAAAAACGTCCAA
* * ** *
16432482 GATCCTCTGATGAAGAAGATGTCAAGCGTTCCTATAGAGATAGAAGGGGTGAACGAGAGAGAATT
1 GATCTTCTGATGAAGAAGATGACAAGCGTTCCTATAGAGATAGAAGGGAAGAAAGAGAGAGAATT
* * * * *
16432547 CATGACGGTGATGATGATGGTAAGGATAGGCGGAGAGAAGAAGGTTCAA
66 CATG-C--TGATAATGATGGTAAGGATAGGCAGAGAGAAAAACGTCCAA
* * * * *
16432596 GATCTTCTGATGAAGATGATGACAAGCCTTCCTATAGGGATAGAAGGCATGAAAGAGA
1 GATCTTCTGATGAAGAAGATGACAAGCGTTCCTATAGAGATAGAAGGGAAGAAAGAGA
16432654 TAAAATTCGT
Statistics
Matches: 142, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
111 53 0.37
112 4 0.03
114 85 0.60
ACGTcount: A:0.37, C:0.11, G:0.31, T:0.20
Consensus pattern (111 bp):
GATCTTCTGATGAAGAAGATGACAAGCGTTCCTATAGAGATAGAAGGGAAGAAAGAGAGAGAATT
CATGCTGATAATGATGGTAAGGATAGGCAGAGAGAAAAACGTCCAA
Found at i:16432661 original size:114 final size:114
Alignment explanation
Indices: 16432441--16432678 Score: 305
Period size: 114 Copynumber: 2.1 Consensus size: 114
16432431 GAATTCCTGC
* *
16432441 TGATAATGATGGTAAGGATAGGCAGAGAGAAAAACGTCCTAGATCCTCTGATGAAGAAGATGTCA
1 TGATAATGATGGTAAGGATAGGCAGAGAGAAAAACGTCCAAGATCCTCTGATGAAGAAGATGACA
* ** * *
16432506 AGCGTTCCTATAGAGATAGAAGGGGTGAACGAGAGAGAATTCATGACGG
66 AGCCTTCCTATAGAGATAGAAGGCATGAAAGAGAGAAAATTCATGACGG
* * * * * * *
16432555 TGATGATGATGGTAAGGATAGGCGGAGAGAAGAAGGTTCAAGATCTTCTGATGAAGATGATGACA
1 TGATAATGATGGTAAGGATAGGCAGAGAGAAAAACGTCCAAGATCCTCTGATGAAGAAGATGACA
* * * *
16432620 AGCCTTCCTATAGGGATAGAAGGCATGAAAGAGATAAAATTCGTGATGG
66 AGCCTTCCTATAGAGATAGAAGGCATGAAAGAGAGAAAATTCATGACGG
*
16432669 TGAAAATGAT
1 TGATAATGAT
16432679 TCCAAGGCTA
Statistics
Matches: 104, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
114 104 1.00
ACGTcount: A:0.37, C:0.11, G:0.31, T:0.22
Consensus pattern (114 bp):
TGATAATGATGGTAAGGATAGGCAGAGAGAAAAACGTCCAAGATCCTCTGATGAAGAAGATGACA
AGCCTTCCTATAGAGATAGAAGGCATGAAAGAGAGAAAATTCATGACGG
Found at i:16439469 original size:20 final size:20
Alignment explanation
Indices: 16439444--16439525 Score: 78
Period size: 20 Copynumber: 4.0 Consensus size: 20
16439434 AAAAATTAAA
16439444 TTAAAATGATTTTAAACAAG
1 TTAAAATGATTTTAAACAAG
*
16439464 TTAAAATGATTTTAACCAAG
1 TTAAAATGATTTTAAACAAG
* * *
16439484 TCAAAAATCATTTTATTAC-A-
1 T-TAAAATGATTTTA-AACAAG
*
16439504 TCAAAATGATTTTCAAACAAG
1 TTAAAATGATTTT-AAACAAG
16439525 T
1 T
16439526 CATAATAGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
19 12 0.24
20 23 0.47
21 13 0.27
22 1 0.02
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.35
Consensus pattern (20 bp):
TTAAAATGATTTTAAACAAG
Found at i:16451287 original size:30 final size:30
Alignment explanation
Indices: 16451252--16451311 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
16451242 CCCACTTAAG
16451252 GTGTGTTGCTGTAC-GTGCTACATATTTGTT
1 GTGTGTTGCT-TACTGTGCTACATATTTGTT
* *
16451282 GTGTGTTTCTTTCTGTGCTACATATTTGTT
1 GTGTGTTGCTTACTGTGCTACATATTTGTT
16451312 ATCTGACAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.12, C:0.13, G:0.23, T:0.52
Consensus pattern (30 bp):
GTGTGTTGCTTACTGTGCTACATATTTGTT
Found at i:16451383 original size:29 final size:29
Alignment explanation
Indices: 16451333--16451389 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
16451323 TACCACACCT
*
16451333 TGTGTGATATTATTCTGTGTTGTGTTATG
1 TGTGTGATATTATTCTGGGTTGTGTTATG
*
16451362 TGTGTGATTTTAATT-TGGGTTGTGTTAT
1 TGTGTGATATT-ATTCTGGGTTGTGTTAT
16451390 CGCATGTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 22 0.88
30 3 0.12
ACGTcount: A:0.14, C:0.02, G:0.28, T:0.56
Consensus pattern (29 bp):
TGTGTGATATTATTCTGGGTTGTGTTATG
Found at i:16455309 original size:24 final size:24
Alignment explanation
Indices: 16455282--16455334 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
16455272 CAAACATTTT
*
16455282 TTTTGTTTCTTGTTT-TC-TTTTCTC
1 TTTTCTTTCTT-TTTCTCATTTTC-C
16455306 TTTTCTTTCTTTTTCTCATTTTCC
1 TTTTCTTTCTTTTTCTCATTTTCC
16455330 TTTTC
1 TTTTC
16455335 AAGTGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 3 0.12
24 18 0.69
25 5 0.19
ACGTcount: A:0.02, C:0.21, G:0.04, T:0.74
Consensus pattern (24 bp):
TTTTCTTTCTTTTTCTCATTTTCC
Found at i:16455314 original size:16 final size:18
Alignment explanation
Indices: 16455295--16455328 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
16455285 TGTTTCTTGT
16455295 TTTC-TTTTCTC-TTTTC
1 TTTCTTTTTCTCATTTTC
16455311 TTTCTTTTTCTCATTTTC
1 TTTCTTTTTCTCATTTTC
16455329 CTTTTCAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTCTTTTTCTCATTTTC
Found at i:16455935 original size:17 final size:16
Alignment explanation
Indices: 16455915--16455964 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 16
16455905 AAGTAAATTA
16455915 ACAAAAGAAATGCAATG
1 ACAAAA-AAATGCAATG
16455932 ACAAAATAAAAATGCAATG
1 AC--AA-AAAAATGCAATG
16455951 ACAATAAAAATGCA
1 ACAA-AAAAATGCA
16455965 TGCAAACTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
17 14 0.47
19 14 0.47
20 2 0.07
ACGTcount: A:0.62, C:0.12, G:0.12, T:0.14
Consensus pattern (16 bp):
ACAAAAAAATGCAATG
Found at i:16455946 original size:19 final size:17
Alignment explanation
Indices: 16455922--16455964 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 17
16455912 TTAACAAAAG
16455922 AAATGCAATGACAAAATAA
1 AAATGCAATGAC--AATAA
16455941 AAATGCAATGACAATAA
1 AAATGCAATGACAATAA
16455958 AAATGCA
1 AAATGCA
16455965 TGCAAACTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 12 0.50
19 12 0.50
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.16
Consensus pattern (17 bp):
AAATGCAATGACAATAA
Found at i:16459394 original size:36 final size:36
Alignment explanation
Indices: 16459347--16459423 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 36
16459337 CAATGTCGCA
*
16459347 GGATAGAAGTCATATCCTCTTCAAGAACGCAGCGAC
1 GGATAGAAGTCATATCCTCTTCAAGAACGCAACGAC
* *
16459383 GGATAGAAGTCATATCCTCTTCAGGAACGCAATGAC
1 GGATAGAAGTCATATCCTCTTCAAGAACGCAACGAC
16459419 GGATA
1 GGATA
16459424 ATATTGTCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (36 bp):
GGATAGAAGTCATATCCTCTTCAAGAACGCAACGAC
Found at i:16472312 original size:30 final size:30
Alignment explanation
Indices: 16472277--16472336 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
16472267 CCCACTTAAG
16472277 GTGTGTTGCTGTAC-GTGCTACATATTTGTT
1 GTGTGTTGCT-TACTGTGCTACATATTTGTT
* *
16472307 GTGTGTTTCTTTCTGTGCTACATATTTGTT
1 GTGTGTTGCTTACTGTGCTACATATTTGTT
16472337 ATCTGACAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.12, C:0.13, G:0.23, T:0.52
Consensus pattern (30 bp):
GTGTGTTGCTTACTGTGCTACATATTTGTT
Found at i:16472408 original size:29 final size:29
Alignment explanation
Indices: 16472358--16472414 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
16472348 TACCACACCT
*
16472358 TGTGTGATATTATTCTGTGTTGTGTTATG
1 TGTGTGATATTATTCTGGGTTGTGTTATG
*
16472387 TGTGTGATTTTAATT-TGGGTTGTGTTAT
1 TGTGTGATATT-ATTCTGGGTTGTGTTAT
16472415 CGCATGTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 22 0.88
30 3 0.12
ACGTcount: A:0.14, C:0.02, G:0.28, T:0.56
Consensus pattern (29 bp):
TGTGTGATATTATTCTGGGTTGTGTTATG
Found at i:16476339 original size:17 final size:19
Alignment explanation
Indices: 16476317--16476361 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
16476307 TTTTTTCTTG
16476317 TTTTCTTTTC-TTTTCTC-
1 TTTTCTTTTCTTTTTCTCA
16476334 TTTTC-TTTCTTTTTCTCA
1 TTTTCTTTTCTTTTTCTCA
16476352 TTTTCCTTTT
1 TTTT-CTTTT
16476362 TCAAGTGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.17
17 12 0.50
18 4 0.17
19 1 0.04
20 3 0.12
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTCTTTTCTTTTTCTCA
Found at i:16476963 original size:17 final size:16
Alignment explanation
Indices: 16476943--16476992 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 16
16476933 AAGTAAATTA
16476943 ACAAAAGAAATGCAATG
1 ACAAAA-AAATGCAATG
16476960 ACAAAATAAAAATGCAATG
1 AC--AA-AAAAATGCAATG
16476979 ACAATAAAAATGCA
1 ACAA-AAAAATGCA
16476993 TGCAAACTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
17 14 0.47
19 14 0.47
20 2 0.07
ACGTcount: A:0.62, C:0.12, G:0.12, T:0.14
Consensus pattern (16 bp):
ACAAAAAAATGCAATG
Found at i:16476974 original size:19 final size:17
Alignment explanation
Indices: 16476950--16476992 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 17
16476940 TTAACAAAAG
16476950 AAATGCAATGACAAAATAA
1 AAATGCAATGAC--AATAA
16476969 AAATGCAATGACAATAA
1 AAATGCAATGACAATAA
16476986 AAATGCA
1 AAATGCA
16476993 TGCAAACTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 12 0.50
19 12 0.50
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.16
Consensus pattern (17 bp):
AAATGCAATGACAATAA
Found at i:16480426 original size:36 final size:36
Alignment explanation
Indices: 16480379--16480455 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 36
16480369 CAATGTCGCA
*
16480379 GGATAGAAGTCATATCCTCTTCAAGAACGCAGCGAC
1 GGATAGAAGTCATATCCTCTTCAAGAACGCAACGAC
* *
16480415 GGATAGAAGTCATATCCTCTTCAGGAACGCAATGAC
1 GGATAGAAGTCATATCCTCTTCAAGAACGCAACGAC
16480451 GGATA
1 GGATA
16480456 ATATTGTCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (36 bp):
GGATAGAAGTCATATCCTCTTCAAGAACGCAACGAC
Found at i:16486849 original size:5 final size:5
Alignment explanation
Indices: 16486831--16486877 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
16486821 ATAGCAAATA
* *
16486831 TTTTC TTCTTC TTTTC TTTTC TCTT- TTCTC TTTTC TTTTTC TTTTC T
1 TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC TTTTC T
16486878 CATTTTCCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
4 2 0.06
5 23 0.66
6 10 0.29
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTC
Found at i:16486857 original size:7 final size:7
Alignment explanation
Indices: 16486831--16486889 Score: 54
Period size: 6 Copynumber: 8.6 Consensus size: 7
16486821 ATAGCAAATA
16486831 TTTTCTTC
1 TTTTC-TC
*
16486839 TTCTTTTC
1 TT-TTCTC
16486847 TTTTCTC
1 TTTTCTC
16486854 TTTTCTC
1 TTTTCTC
16486861 -TTT-TC
1 TTTTCTC
16486866 TTTT-TC
1 TTTTCTC
16486872 TTTTCTC
1 TTTTCTC
16486879 ATTTTC-C
1 -TTTTCTC
16486886 TTTT
1 TTTT
16486890 TCAAGTGACT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
5 2 0.04
6 16 0.36
7 14 0.31
8 11 0.24
9 2 0.04
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTTCTC
Found at i:16486864 original size:19 final size:18
Alignment explanation
Indices: 16486831--16486891 Score: 79
Period size: 19 Copynumber: 3.3 Consensus size: 18
16486821 ATAGCAAATA
*
16486831 TTTTCTTCT-TCTTTTCT
1 TTTTCTTTTCTCTTTTCT
16486848 TTTCTCTTTTCTCTTTTCT
1 TTT-TCTTTTCTCTTTTCT
16486867 TTTTCTTTTCTCATTTTCCT
1 TTTTCTTTTCTC-TTTT-CT
16486887 TTTTC
1 TTTTC
16486892 AAGTGACTGA
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
17 3 0.08
18 14 0.36
19 15 0.38
20 7 0.18
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTCTTTTCTCTTTTCT
Found at i:16486870 original size:25 final size:25
Alignment explanation
Indices: 16486830--16486889 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
16486820 TATAGCAAAT
*
16486830 ATTTTCT-TCTTCTTTTCTTTTCTC
1 ATTTTCTCTTTTCTTTTCTTTTCTC
16486854 -TTTTCTCTTTTCTTTTTCTTTTCTC
1 ATTTTCTCTTTTC-TTTTCTTTTCTC
16486879 ATTTTC-CTTTT
1 ATTTTCTCTTTT
16486890 TCAAGTGACT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.19
24 4 0.12
25 17 0.53
26 5 0.16
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.73
Consensus pattern (25 bp):
ATTTTCTCTTTTCTTTTCTTTTCTC
Found at i:16487500 original size:19 final size:17
Alignment explanation
Indices: 16487476--16487518 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 17
16487466 ATAACAAAAG
16487476 AAATGCAATGACAAAATAA
1 AAATGCAATG--AAAATAA
*
16487495 AAATGCAATGATAATAA
1 AAATGCAATGAAAATAA
16487512 AAATGCA
1 AAATGCA
16487519 TAAAAACTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 13 0.57
19 10 0.43
ACGTcount: A:0.60, C:0.09, G:0.12, T:0.19
Consensus pattern (17 bp):
AAATGCAATGAAAATAA
Found at i:16491633 original size:17 final size:18
Alignment explanation
Indices: 16491596--16491635 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
16491586 TAACAAAATG
16491596 ATGCAGTGACAAAATAAA
1 ATGCAGTGACAAAATAAA
* *
16491614 ATGCAGTGATAATA-AAA
1 ATGCAGTGACAAAATAAA
16491631 ATGCA
1 ATGCA
16491636 TTAAAACTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20
Consensus pattern (18 bp):
ATGCAGTGACAAAATAAA
Found at i:16507354 original size:23 final size:22
Alignment explanation
Indices: 16507323--16507366 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
16507313 AAAGAAATAA
*
16507323 AATTAACCCAATTTAATTAATT
1 AATTAACCCAAATTAATTAATT
*
16507345 AATTCAACCCAAATTATTTAAT
1 AATT-AACCCAAATTAATTAAT
16507367 GAAATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTAACCCAAATTAATTAATT
Found at i:16512846 original size:24 final size:24
Alignment explanation
Indices: 16512814--16512863 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
16512804 TATGTAAAGT
16512814 AAGAATCAAAATGATATAATATTA
1 AAGAATCAAAATGATATAATATTA
16512838 AAGAATCAAAATGATATAATATTA
1 AAGAATCAAAATGATATAATATTA
16512862 AA
1 AA
16512864 AGATACTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.28
Consensus pattern (24 bp):
AAGAATCAAAATGATATAATATTA
Found at i:16528339 original size:23 final size:22
Alignment explanation
Indices: 16528303--16528346 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
16528293 CAAATATTTC
*
16528303 ATTAAATAATTTGGGTTGAATTA
1 ATTAAATAAATTGGGTT-AATTA
*
16528326 ATTAATTAAATTGGGTTAATT
1 ATTAAATAAATTGGGTTAATT
16528347 TTATTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (22 bp):
ATTAAATAAATTGGGTTAATTA
Found at i:16544033 original size:17 final size:18
Alignment explanation
Indices: 16544013--16544052 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
16544003 TTAGTTTTAA
16544013 TGCATTTT-TATTATCAC
1 TGCATTTTATATTATCAC
* *
16544030 TGCATTTTATTTTGTCAC
1 TGCATTTTATATTATCAC
16544048 TGCAT
1 TGCAT
16544053 CATTTTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.53
Consensus pattern (18 bp):
TGCATTTTATATTATCAC
Found at i:16549825 original size:17 final size:18
Alignment explanation
Indices: 16549803--16549845 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
16549793 ATAGTTTTTA
16549803 TGCATTTTTA-TTATCAT
1 TGCATTTTTATTTATCAT
*
16549820 TGCATTTTTATTTTGTCAT
1 TGCATTTTTA-TTTATCAT
16549839 TGCATTT
1 TGCATTT
16549846 CTTTTGTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.43
19 13 0.57
ACGTcount: A:0.19, C:0.12, G:0.09, T:0.60
Consensus pattern (18 bp):
TGCATTTTTATTTATCAT
Found at i:16565702 original size:24 final size:24
Alignment explanation
Indices: 16565672--16565721 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
16565662 GAGAGTATCT
16565672 TTTAATATTATATCATTTTGATTC
1 TTTAATATTATATCATTTTGATTC
16565696 TTTAATATTATATCATTTTGATTC
1 TTTAATATTATATCATTTTGATTC
16565720 TT
1 TT
16565722 ACTTTACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.28, C:0.08, G:0.04, T:0.60
Consensus pattern (24 bp):
TTTAATATTATATCATTTTGATTC
Found at i:16583571 original size:17 final size:18
Alignment explanation
Indices: 16583551--16583590 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
16583541 TTAGTTTTAA
16583551 TGCATTTT-TATTATCAC
1 TGCATTTTATATTATCAC
* *
16583568 TGCATTTTATTTTGTCAC
1 TGCATTTTATATTATCAC
16583586 TGCAT
1 TGCAT
16583591 CATTTTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.53
Consensus pattern (18 bp):
TGCATTTTATATTATCAC
Found at i:16589356 original size:17 final size:18
Alignment explanation
Indices: 16589334--16589376 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
16589324 ATAGTTTTTA
16589334 TGCATTTTTA-TTATCAT
1 TGCATTTTTATTTATCAT
*
16589351 TGCATTTTTATTTTGTCAT
1 TGCATTTTTA-TTTATCAT
16589370 TGCATTT
1 TGCATTT
16589377 CTTTTGTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.43
19 13 0.57
ACGTcount: A:0.19, C:0.12, G:0.09, T:0.60
Consensus pattern (18 bp):
TGCATTTTTATTTATCAT
Found at i:16589982 original size:15 final size:14
Alignment explanation
Indices: 16589962--16590014 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
16589952 TCAGTCACTT
*
16589962 GAAAAAGGAAAATGA
1 GAAAAAAGAAAA-GA
16589977 GAAAAAAAGAAAAGA
1 G-AAAAAAGAAAAGA
*
16589992 GAAAAGAGAAAAGA
1 GAAAAAAGAAAAGA
*
16590006 -AAAGAAGAA
1 GAAAAAAGAA
16590015 GAAAATGTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 7 0.21
14 12 0.36
15 4 0.12
16 10 0.30
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.02
Consensus pattern (14 bp):
GAAAAAAGAAAAGA
Found at i:16589995 original size:23 final size:23
Alignment explanation
Indices: 16589963--16590021 Score: 70
Period size: 22 Copynumber: 2.6 Consensus size: 23
16589953 CAGTCACTTG
16589963 AAAAAG-GAAAATGAGAAAA-AA
1 AAAAAGAGAAAATGAGAAAAGAA
16589984 AGAAAAGAGAAAA-GAGAAAAGAA
1 A-AAAAGAGAAAATGAGAAAAGAA
*
16590007 AAGAAGAAGAAAATG
1 AAAAAG-AGAAAATG
16590022 TTTGCTATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
21 1 0.03
22 16 0.50
23 14 0.44
24 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (23 bp):
AAAAAGAGAAAATGAGAAAAGAA
Found at i:16596447 original size:36 final size:36
Alignment explanation
Indices: 16596397--16596473 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 36
16596387 CTGACAATAT
*
16596397 TATCCGTCATTGCGTTCCTGAAGAGGATATGACTTC
1 TATCCGTCACTGCGTTCCTGAAGAGGATATGACTTC
* *
16596433 TATCCGTCGCTGCGTTCTTGAAGAGGATATGACTTC
1 TATCCGTCACTGCGTTCCTGAAGAGGATATGACTTC
16596469 TATCC
1 TATCC
16596474 TGCGACATTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (36 bp):
TATCCGTCACTGCGTTCCTGAAGAGGATATGACTTC
Found at i:16599882 original size:17 final size:18
Alignment explanation
Indices: 16599860--16599902 Score: 70
Period size: 19 Copynumber: 2.4 Consensus size: 18
16599850 ATAGTTTGCA
16599860 TGCATTTTTA-TTGTCAT
1 TGCATTTTTATTTGTCAT
16599877 TGCATTTTTATTTTGTCAT
1 TGCATTTTTA-TTTGTCAT
16599896 TGCATTT
1 TGCATTT
16599903 CTTTTGTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 10 0.42
19 14 0.58
ACGTcount: A:0.16, C:0.12, G:0.12, T:0.60
Consensus pattern (18 bp):
TGCATTTTTATTTGTCAT
Found at i:16599907 original size:17 final size:16
Alignment explanation
Indices: 16599860--16599909 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 16
16599850 ATAGTTTGCA
16599860 TGCATTTTTATTGTCAT
1 TGCATTTTT-TTGTCAT
16599877 TGCATTTTTATTTTGTCAT
1 TGCA--TTT-TTTTGTCAT
16599896 TGCATTTCTTTTGT
1 TGCATTT-TTTTGT
16599910 TAATTTACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
17 13 0.45
19 14 0.48
20 2 0.07
ACGTcount: A:0.14, C:0.12, G:0.12, T:0.62
Consensus pattern (16 bp):
TGCATTTTTTTGTCAT
Found at i:16600519 original size:24 final size:24
Alignment explanation
Indices: 16600492--16600538 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
16600482 AGTCACTTGA
16600492 AAAAG-GAAAATGAGAAA-AAGAAAG
1 AAAAGAGAAAA-GA-AAACAAGAAAG
16600516 AAAAGAGAAAAGAAAACAAGAAA
1 AAAAGAGAAAAGAAAACAAGAAA
16600539 AAATGTTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.02
Consensus pattern (24 bp):
AAAAGAGAAAAGAAAACAAGAAAG
Found at i:16600526 original size:16 final size:18
Alignment explanation
Indices: 16600497--16600530 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
16600487 CTTGAAAAAG
16600497 GAAAATGAGAAAAAGAAA
1 GAAAATGAGAAAAAGAAA
16600515 GAAAA-GAG-AAAAGAAA
1 GAAAATGAGAAAAAGAAA
16600531 ACAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 3 0.19
18 5 0.31
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.03
Consensus pattern (18 bp):
GAAAATGAGAAAAAGAAA
Found at i:16604485 original size:29 final size:29
Alignment explanation
Indices: 16604433--16604489 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
16604423 TCAACATGCG
*
16604433 ATAACACAACCCAAATTAAAATCACACAC
1 ATAACACAACACAAATTAAAATCACACAC
*
16604462 ATAACACAACACAGAA-TAATATCACACA
1 ATAACACAACACA-AATTAAAATCACACA
16604490 AGGTGTGGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 23 0.92
30 2 0.08
ACGTcount: A:0.56, C:0.28, G:0.02, T:0.14
Consensus pattern (29 bp):
ATAACACAACACAAATTAAAATCACACAC
Found at i:16634759 original size:92 final size:92
Alignment explanation
Indices: 16634340--16645950 Score: 17173
Period size: 92 Copynumber: 125.8 Consensus size: 92
16634330 NNNNNNNNNN
*
16634340 TTTGAAGCTTCATCTTGCTCTTACTACATCTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16634405 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * * *
16634432 TTTGAA-ATTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* **
16634496 GTACAACTTCAAGAGGATAGGAATTGGCG
64 CTACAACTTCAAGAGGATAGGAATTGATG
*
16634525 TTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGACTTGCTAT-CAAC-TTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16634588 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * * *
16634615 TTTGAA-TTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* **
16634679 GTACAACTTCAAGAGGATAGGAATTGGCG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* * *
16634708 TTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGAGTTGCTATCCTACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
* *
16634773 A-AACTTAAAGAGGATAGGGATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * *
16634799 TTTGAAGCTTCATCTTGCTGTTACTGCAACTTAAAGAGAGATAAAGACTTGCTATCCAACTTTAC
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTT-CAGAGAGATAAAGACTTGCTATCCAACTTTAC
**
16634864 TACAACTTTTAGAGGATAGGAATTGATG
65 TACAACTTCAAGAGGATAGGAATTGATG
* * * * *
16634892 TTTGAAACTTCATCTTACTCTTTACTACAAATTCAGAGAGATAAAGACTT-TTATCCAATTTTAC
1 TTTGAAGCTTCATCTTGCTC-TTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTAC
16634956 TACAACTTCAAGAGGATAGGAATTGATG
65 TACAACTTCAAGAGGATAGGAATTGATG
* * *
16634984 TTTGAAGCTTCATCTTGCTCTTTCTACAAATTCAAATAGAGA-AAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16635048 CTACAACTTCAAGAGGATAGG-ATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* *
16635076 TTTCGAAGTTTCATCTTGTTCTTACTACAAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTA
1 TTT-GAAGCTTCATCTTGCTCTTACTAC-AACTTCAGAGAGATAAAGACTTGCTATCCAACTTTA
*
16635141 GTACAACTTCAAGAGGATAGGAATTGATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
*
16635170 TTTGAAGCTTCATCTTGCTCTTACTACAATTTCAGAGAGATAAAGAC-TGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16635234 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * *
16635261 TTTGAAACTTCATCTTGCTCTTTCTACAAATTCAGAGAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* *
16635326 CTACAACTTCAAGAGGGTAGGAATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
*
16635355 TTTGAAGCTTCATCTTGCTCTTACTACATCTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16635420 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * *
16635447 TTTGAAATTTCATCTTGCTCTT-CTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* * **
16635511 GTACAAATTCAAGAGGATAGGAATTGGCG
64 CTACAACTTCAAGAGGATAGGAATTGATG
*
16635540 TTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16635605 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * *
16635632 TTTGAAATTTCATCTTGCTCTTTC-AGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTT
1 TTTGAAGCTTCATCTTGCTCTTACTA-CAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTT
* *
16635696 AGTACAACTTCAAGAGGATAGGAATAGGAATTGG
63 ACTACAACTTCAAGAGGATAGGAAT-TG-A-T-G
* * *
16635730 CCTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGAGTTGCTATCCTACTTTT
1 --TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAAC-TTT
*
16635795 ACTACAACTT-AAGAGGATAGGGATTGATG
63 ACTACAACTTCAAGAGGATAGGAATTGATG
* *
16635824 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCTATCCAAC-TTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
*
16635888 ACAACTTCTTTTAGAGGATAGGAATTGATG
66 ACAACTTC---AAGAGGATAGGAATTGATG
* * * *
16635918 TTTGAAACTTCATCTTGCTCGTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAATTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16635983 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
16636010 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGA-TTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16636074 ACAACTTCAAGAGGATAGG-ATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16636100 TTCGAAGTTTCATCTTGTTCTTACTACAA-TTCAGAGAGATAAAGACTTGCTATCCAACTTTAGT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16636164 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
*
16636191 TTTGAAGCTTCATCTTGCTCTTACTACAATTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16636256 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16636283 TTTGAAACTTCATC-TGCTCTTTCTACAAATCCAGAGAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16636347 CTACAACTTCAAGAGTAGGATAGGAATTTATG
64 CTACAACTTC-A-AG-AGGATAGGAATTGATG
*
16636379 TTTGAAGCTTCATCTTGCTCTTACTACATCTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16636444 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * *
16636471 TTTGAAATTTCATCTTGCTCTTTCTGCAA-TTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* **
16636535 GTACAACTTCAAGAGGATAGGAATTGGCG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* *
16636564 TTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGGGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
*
16636629 ACAACTTCAAGAGGATAGGAATTGCTG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * *
16636656 TTTGAAATTTCATCTTGCTCTTTCTGCAA-TTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* * *
16636720 GTACAACTTCAAGAGGATAGCAATTTG-CG
64 CTACAACTTCAAGAGGATAGGAA-TTGATG
* * * *
16636749 TTTGAAGCTTCATCTTGCTCTTACTTCAAATTCAGAGAGATAAAGA-TTGCTACCCTACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
*
16636813 ACAACTT-AAGAGGATAGGGATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
*
16636839 TTTGAAGCTTCATCTTGCTCTTACTGCAACTT-AGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
* *
16636903 ACAACTT-TAGAGGATAAGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * *
16636929 TTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAATTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16636994 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16637021 TTTGAAGCTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16637086 CTACAACTTCAAGAGGATAGG-ATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* *
16637114 TTCGAAGTTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16637179 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* *
16637206 TTTGAAGCTTCATCTTGCTCTTACTACAA-TTCAGAGAGATAAAGACTTGTTATCCAACTTTAGT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16637270 ACAACTTCAAGAGGATAGGAATTGGCG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16637297 TTTGAAGCTTCATCTTGCTATTACTTCAACTTCAGTGAGATAAAGAGTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
*
16637362 ACAACTTCAAGAGGATAGGGATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* *
16637389 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16637454 ACAACTTTTAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
*
16637481 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAATTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16637546 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * *
16637573 TTTGAAGCTTCATCTTGCTCTT-CTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16637637 CTACAACTTCAAGAGGATAGG-ATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* * *
16637665 TTCGAAGTTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16637730 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * * *
16637757 TTTGAAATTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16637822 GTACAACTTCAAGAGGATAGGAATTGATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* * * * *
16637851 TTTGAAACTTCATCGTGCTCTTTCTACAAATCCAGAGAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
16637916 CTACAACTTCAAG-GG-TAGGAATT-ATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
16637942 TTTGAAGCTTCATCTTGCTCTTACTACAAATCTTCAGAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTAC-AA-CTTCAGAGAGATAAAGACTTGCTATCCAACTTTA
16638007 CTACAACTTCAAGAGGATAGGAATTGATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
** * * *
16638036 TTTGAAATTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGAGTTGCTATCCTACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
* * *
16638101 ACAACTTTAAGAGAATAGGGATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* *
16638128 -TTGAAGCTTCATCTTGCTCTTACTGC-ACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16638191 ACAACTTTTAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * * *
16638218 TTTGAAACTTCATCTTGCTCTTAGTACAACTTTAGAGAGATAAAAGACTTGTTATCCAATTTTAC
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGAT-AAAGACTTGCTATCCAACTTTAC
16638283 TACAACTTCAAGAGGATAGGAATTGATG
65 TACAACTTCAAGAGGATAGGAATTGATG
16638311 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAAGAGAGATAAAGACTTGCTATCCAACTTTAC
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC-AGAGAGATAAAGACTTGCTATCCAACTTTAC
*
16638376 TACAACTTCAAGAGGATAGG-ATTTATG
65 TACAACTTCAAGAGGATAGGAATTGATG
* * * *
16638403 TTCGAAGTTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTAGT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16638468 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
*
16638495 TTTGAAGCTTCATCTTGCTCTTACTACAATTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16638560 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
*
16638587 TTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCC-ACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16638651 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
16638678 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGC-ATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
* *
16638742 ACAACTTTAAGAGGATAGGGATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* *
16638769 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16638834 ACAACTTTTAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16638861 TTTGAAACTTCATCTTGCTCGTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAATTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16638926 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
16638953 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16639018 ACAACTTCAAGAGGATAGG-ATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16639044 TTCGAAGTTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTAGT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16639109 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
*
16639136 TTTGAAGCTTCATCTTGCTCTTACTACAATTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16639201 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16639228 TTTGAAACTTCATCGTGCTCTTTCTACAA-TCCAGAGAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16639292 CTACAACTTCAAGAGG-TAGGAATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* *
16639320 TTTGAAGCTTCATCTTGCTCTTACTACATCTTCAGAGTGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16639385 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * *
16639412 TTTGAAATTTCATCTTGCTCTT-CTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* **
16639476 GTACAACTTCAAGAGGATAGGAATTGGCG
64 CTACAACTTCAAGAGGATAGGAATTGATG
*
16639505 TTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAG-GATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
*
16639569 ACAACTTCAAGAGGATAGGAATTGCTG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * * *
16639596 TTTGAAATTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* * *
16639661 GTACAACTTCAAGAGGATAGCAATTG-CG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* * * *
16639689 TTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAATAGTTGCTA-CCTACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
* *
16639753 ACAACTTTAAGAGGATAGGGATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* *
16639780 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
** *
16639845 ACAACTTTTAGAGGATAAGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16639872 TTTGAAACTTCATCTTACTCTTACTACACAACTTCAGAGAGATAAAGACTTGTTATCCAATTTTA
1 TTTGAAGCTTCATCTTGCTCTTACT--ACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTA
16639937 CTACAACTTCAAGAGGATAGGAATTGATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* * * * *
16639966 TTTGAAGCTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGATTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16640031 CTACAACTTCAAGAGGATAGG-ATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* * *
16640059 TTCGAAGTTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16640124 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16640151 TTTCAAGCTTCATCTTGCTCTTACTACAATTTCAGAGAGATAAAGACTTGTTATCCAACTTTAGT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16640216 ACAACTTCAAGAGGATAGGAATTGGCG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16640243 TTTGAAGCTTCATCTTGCTATTACTTCAACTTCAGTGAGATAAAGAGTTGCTATCCTAA-TTTAC
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCC-AACTTTAC
* *
16640307 TACAACTTTAAGAGGATAGGGATTGATG
65 TACAACTTCAAGAGGATAGGAATTGATG
* * *
16640335 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTACAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16640400 ACAACTTTTAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16640427 TTTGAAACTTCATCTTGCTCGTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAATTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16640492 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16640519 TTTGAAGCTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16640584 CTACAACTTCAAGAGGATAGG-ATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* * *
16640612 TTCGAAGTTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16640677 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * * *
16640704 TTTGAAATTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16640769 GTACAACTTCAAGAGGATAGGAATTGATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* * * * *
16640798 TTTGAAACTTCATCGTGCTCTTTCTACAAATCCAGAGAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* *
16640863 CTACAACTTCAAGAGGGTAGGAATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* *
16640892 TTTGAAGCTTCATCTTGCTCTTACTACATCTTCAGAGTGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16640957 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * *
16640984 TTTGAAATTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGAGTTGCTATCCTACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
* * *
16641049 ACAACTTTAAGAGAATAGGGATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* *
16641076 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16641141 ACAACTTTTAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16641168 TTTGAAACTTCATCTTGCTCTTAGTACAACTTTAGAGAGATAAAGACTTGTTATCCAA-TTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16641232 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
*
16641259 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAAAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
*
16641324 ACAACTTCAAGAGGATAGG-ATTTATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16641350 TTCGAAGTTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTAGT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16641415 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
*
16641442 TTTGAAGCTTCATCTTGCTCTTACTACAATTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16641507 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * *
16641534 TTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAATTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16641599 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
*
16641626 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCAATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
* *
16641691 ACAACTTTAAGAGGATAGGGATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* *
16641718 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16641783 ACAACTTTTAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16641810 TTTGAAACTTCATCTTGCTCGTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAATTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16641875 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
16641902 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16641967 ACAACTTCAAGAGGATAGG-ATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16641993 TTCGAAGTTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTAGT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16642058 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
*
16642085 TTTGAAGCTTCATCTTGCTCTTACTACAATTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16642150 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16642177 TTTGAAACTTCATCGTGCTCTTTCTACAGA-TCCAGAGAGAGATAAAGACTTGCTATCCAACTTT
1 TTTGAAGCTTCATCTTGCTCTTACTACA-ACTTC--AGAGAGATAAAGACTTGCTATCCAACTTT
* *
16642241 ACTACAACTTCAAGAGGGTAGGAATTTATG
63 ACTACAACTTCAAGAGGATAGGAATTGATG
* *
16642271 TTTGAAGCTTCATCTTGCTCTTACTACATCTTCAGAGTGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16642336 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * * *
16642363 TTTGAAATTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* **
16642428 GTACAACTTCAAGAGGATAGGAATTGGCG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* *
16642457 TTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGGGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
*
16642522 ACAACTTCAAGAGGATAGGAATTGCTG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * * *
16642549 TTTGAAATTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* * *
16642614 GTACAACTTCAAGAGGATAGCAATTTG-CG
64 CTACAACTTCAAGAGGATAGGAA-TTGATG
* * * * *
16642643 TTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAATAGTTGCTACCCTACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
* *
16642708 ACAACTTTAAGAGGATAGGGATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* *
16642735 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
** *
16642800 ACAACTTTTAGAGGATAAGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16642827 TTTGAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAATTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16642892 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16642919 TTTGAAGCTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16642984 CTACAACTTCAAGAGGATAGG-ATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* * *
16643012 TTCGAAGTTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16643077 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16643104 TTTCAAGCTTCATCTTGCTCTTACTACAATTTCAGAGAGATAAAGACTTGTTATCCAACTTTAGT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16643169 ACAACTTCAAGAGGATAGGAATTGGCG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16643196 TTTGAAGCTTCATCTTGCTATTACTTCAACTTCAGTGAGATAAAGAGTTGCTATCCTAA-TTTAC
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCC-AACTTTAC
* *
16643260 TACAACTTTAAGAGGATAGGGATTGATG
65 TACAACTTCAAGAGGATAGGAATTGATG
* *
16643288 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16643353 ACAACTTTTAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16643380 TTTGAAACTTCATCTTGCTCGTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAATTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16643445 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * * *
16643472 TTTGAAACTTCATCGTGCTCTTTCTACAAATCCAGGGAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCA--GAGAGATAAAGACTTGCTATCCAACTTTA
* *
16643537 CTACAACTTCAAGAGGGTAGGAATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
*
16643566 TTTGAAGCTTCATCTTGCTCTTACTACATCTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16643631 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * * *
16643658 TTTGAAATTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16643723 GTACAACTTCAAGAGGATAGGAATTGATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* * * * *
16643752 TTTGAAACTTCATCGTGCTCTTTCTACAAATCCAGAGAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* *
16643817 CTACAACTTCAAGAGGGTAGGAATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* *
16643846 TTTGAAGCTTCATCTTGCTCTTACTACATCTTCAGAGTGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16643911 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * *
16643938 TTTGAAATTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAACACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16644003 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * *
16644030 TTTGAAATTTCATCTTGCTCTTTC-AGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTT
1 TTTGAAGCTTCATCTTGCTCTTACTA-CAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTT
*
16644094 AGTACAACTTCAAGAGGATAGGAATTGATG
63 ACTACAACTTCAAGAGGATAGGAATTGATG
** * * * *
16644124 TTTGAAATTTCATCTTGCTCTTTCTGCAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* **
16644189 GTACAACTTCAAGAGGATAGGAATTGGCG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* *
16644218 TTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGGGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
*
16644283 ACAACTTCAAGAGGATAGGAATTGCTG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * *
16644310 TTTGAAATTTCATCTTGCTCTTTCTACAAATTCAAATAGAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
* * **
16644375 GTACAACTTCAAGAGGATAGCAATTGGCG
64 CTACAACTTCAAGAGGATAGGAATTGATG
* * * *
16644404 TTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGATATAAAGAGTTGCTATCCTACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
* *
16644469 ACAACTTTAAGAGGATAGGGATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* *
16644496 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16644561 ACAACTTTTAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16644588 TTTGAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAATTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16644653 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
16644680 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
* *
16644745 ACAACTTCAAGAGGATAAG-ATTTATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16644771 TTCGAAGTTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTAGT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16644836 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* *
16644863 TTTGAAGCTTCATCTTGCTCTTACTACAATTTCAGAGAGATAAAGACTTGCTATCCAACTTTAGT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16644928 ACAACTTCAAGAGGATAGGAATTGGCG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16644955 TTTGAAGCTTCATCTTGCTATTACTTCAACTTCAGTGAGATAAAGAGTTGCTATCCTAA-TTTAC
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCC-AACTTTAC
* *
16645019 TACAACTTTAAGAGGATAGGGATTGATG
65 TACAACTTCAAGAGGATAGGAATTGATG
* *
16645047 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16645112 ACAACTTTTAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * *
16645139 TTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAATTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16645204 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
16645231 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
*
16645296 ACAACTTCAAGAGGATAGG-ATTTATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * *
16645322 TTCGAAGTTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16645387 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * *
16645414 TTTGAAGCTTCATCTTGCTCTTACTACAATTTCAGAGAGATAAAGACTTGTTATCCAACTTTAGT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16645479 ACAACTTCAAGAGGATAGGAATTGGCG
66 ACAACTTCAAGAGGATAGGAATTGATG
* * * *
16645506 TTTGAAGCTTCATCTTGCTATTACTTCAACTTCAGTGAGATAAAGAGTTGCTATCCTAA-TTTAC
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCC-AACTTTAC
* *
16645570 TACAACTTTAAGAGGATAGGGATTGATG
65 TACAACTTCAAGAGGATAGGAATTGATG
* *
16645598 TTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
**
16645663 ACAACTTTTAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * * * * *
16645690 TTTGAAATTTCATCTTGCTCTTTCTGCAAATTCAAATAAAGATAAAGGCTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
*
16645755 CTACAACTTCAAGAGGATAGGAATTTATG
64 CTACAACTTCAAGAGGATAGGAATTGATG
16645784 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
16645849 ACAACTTCAAGAGGATAGGAATTGATG
66 ACAACTTCAAGAGGATAGGAATTGATG
** * * * *
16645876 TTTGAAATTTCATCTTGCTCTTTCTACAAATTCAAATAAAGATAAAGACTTGCTATCCAACTTTA
1 TTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTGCTATCCAACTTTA
16645941 CTACAACTTC
64 CTACAACTTC
16645951 CTATCCTATG
Statistics
Matches: 10430, Mismatches: 944, Indels: 288
0.89 0.08 0.02
Matches are distributed among these distances:
89 54 0.01
90 319 0.03
91 1737 0.17
92 5282 0.51
93 1044 0.10
94 1812 0.17
95 60 0.01
96 30 0.00
97 16 0.00
98 37 0.00
99 12 0.00
100 27 0.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (92 bp):
TTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACT
ACAACTTCAAGAGGATAGGAATTGATG
Found at i:16655357 original size:9 final size:9
Alignment explanation
Indices: 16655342--16655384 Score: 52
Period size: 9 Copynumber: 4.6 Consensus size: 9
16655332 TTAAATCAAG
16655342 AAAAAAATA
1 AAAAAAATA
16655351 CAAAAAAA-A
1 -AAAAAAATA
16655360 GAAGAAAAATA
1 -AA-AAAAATA
16655371 AAAAAAATA
1 AAAAAAATA
16655380 AAAAA
1 AAAAA
16655385 TAGAAAGAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
9 15 0.50
10 14 0.47
11 1 0.03
ACGTcount: A:0.86, C:0.02, G:0.05, T:0.07
Consensus pattern (9 bp):
AAAAAAATA
Found at i:16655369 original size:20 final size:18
Alignment explanation
Indices: 16655339--16655377 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
16655329 TGTTTAAATC
16655339 AAGAAAAAAATACAAAAAA
1 AAGAAAAAAATA-AAAAAA
16655358 AAGAAGAAAAATAAAAAAA
1 AAGAA-AAAAATAAAAAAA
16655377 A
1 A
16655378 TAAAAAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.85, C:0.03, G:0.08, T:0.05
Consensus pattern (18 bp):
AAGAAAAAAATAAAAAAA
Found at i:16655850 original size:42 final size:42
Alignment explanation
Indices: 16655791--16656272 Score: 594
Period size: 42 Copynumber: 11.5 Consensus size: 42
16655781 AAGGAAATCA
*
16655791 TTCATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* * *
16655833 TTCATCACATTTAGAGGCCTAAGTGTGGAGGCCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* *
16655875 TTCAT-GCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* * *
16655916 TTTATTGCATTTAGAGGCTCAAGTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
*
16655958 TTCA-CAGCATTTAGAGGCCCAAGTGTCGAGGTCCATTTACTT
1 TTCATC-GCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* *
16656000 TTCA-CAGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
1 TTCATC-GCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* * * * *
16656042 TTCATTGCATTCAAAGGCCTAGGTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* * * * * *
16656084 TTAATTGTATTCAGAGG-CCTAGATGTGGAGGTCCATTCACTT
1 TTCATCGCATTTAGAGGCCCAAG-TGTGGAGGTCCATTTACTT
** * * * *
16656126 TTCATCAAATTCAGAGGCTCGAGTGTGGAGGCCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* * *
16656168 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
* * *
16656210 TTCATTGCATTTAGAGGCCCAGGAGTGGAGGTCCATTTACTT
1 TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
16656252 TTCATCGCATTTAGAGGCCCA
1 TTCATCGCATTTAGAGGCCCA
16656273 TTTACTTTTC
Statistics
Matches: 385, Mismatches: 50, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
41 39 0.10
42 343 0.89
43 3 0.01
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (42 bp):
TTCATCGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTT
Found at i:16656078 original size:126 final size:126
Alignment explanation
Indices: 16655791--16656619 Score: 944
Period size: 126 Copynumber: 6.7 Consensus size: 126
16655781 AAGGAAATCA
* ** * *
16655791 TTCATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTTCATCACATTTAGAGGCCTAAG
1 TTCATTGCATTTAGAGGCCTAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGG
* * *
16655856 TGTGGAGGCCCATTTACTTTTCA-TGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
66 TGTGGAGGTCCATTTACTTTTCACTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* ** *
16655916 TTTATTGCATTTAGAGG-CTCAAGTGTGGAGGTCCATTTACTTTTCACAGCATTTAGAGGCCCAA
1 TTCATTGCATTTAGAGGCCT-AAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAG
* *
16655980 GTGTCGAGGTCCATTTACTTTTCACAGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
65 GTGTGGAGGTCCATTTACTTTTCACTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* * * * * * * *
16656042 TTCATTGCATTCAAAGGCCTAGGTGTGGAGGTCCATTTACTTTTAATTGTATTCAGAGGCCTAGA
1 TTCATTGCATTTAGAGGCCTAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGG
* * *
16656107 TGTGGAGGTCCATTCACTTTTCA-T-CAAATTCAGAGGCTC-GAGTGTGGAGGCCCATTTACTT
66 TGTGGAGGTCCATTTACTTTTCACTGC--ATTTAGAGGCCCAG-GTGTGGAGGCCCATTTACTT
*
16656168 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGG
1 TTCATTGCATTTAGAGGCCTAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGG
*
16656233 AGTGGAGGTCCATTTACTTTTCA-TCGCATTT--------A------GAGGCCCATTTACTT
66 TGTGGAGGTCCATTTACTTTTCACT-GCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
** ** * * * * **
16656280 TTCACCGCATACAGAGGCCCAAGTGTGGAGGCCCATTTACTTTTCATTGCATTCAAAAACCCAGG
1 TTCATTGCATTTAGAGGCCTAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGG
* ** * *
16656345 TGTGGAGGTCCATTTACTTTTCATTGCATAAAGAGGCCCAGGTGTGGAGGTCTATTTACTT
66 TGTGGAGGTCCATTTACTTTTCACTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* *
16656406 TTCATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTTCATTGGATTTAGAGGCCCAGG
1 TTCATTGCATTTAGAGGCCTAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGG
* * * **
16656471 TG-GTGAGGCCCATTTACTTTTCATTGAATTTAGAGGCTTAGGTGTGGAGGCCCATTTACTT
66 TGTG-GAGGTCCATTTACTTTTCACTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* * * * * * * *
16656532 TTCTTTACATTTAGAGGCCTAGGTGGGGAGGTCCATTTACTTTTCCTTGCAATTGGAGGCCTAGG
1 TTCATTGCATTTAGAGGCCTAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGG
16656597 TGTGGAGGTCCATTTACTTTTCA
66 TGTGGAGGTCCATTTACTTTTCA
16656620 TTATAATCCT
Statistics
Matches: 595, Mismatches: 83, Indels: 51
0.82 0.11 0.07
Matches are distributed among these distances:
112 95 0.16
113 1 0.00
120 1 0.00
124 2 0.00
125 80 0.13
126 412 0.69
127 3 0.01
128 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (126 bp):
TTCATTGCATTTAGAGGCCTAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGG
TGTGGAGGTCCATTTACTTTTCACTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
Found at i:16656273 original size:28 final size:28
Alignment explanation
Indices: 16656237--16656300 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
16656227 CCCAGGAGTG
* * **
16656237 GAGGTCCATTTACTTTTCATCGCATTTA
1 GAGGCCCATTTACTTTTCACCGCATACA
16656265 GAGGCCCATTTACTTTTCACCGCATACA
1 GAGGCCCATTTACTTTTCACCGCATACA
16656293 GAGGCCCA
1 GAGGCCCA
16656301 AGTGTGGAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.31
Consensus pattern (28 bp):
GAGGCCCATTTACTTTTCACCGCATACA
Found at i:16656279 original size:70 final size:70
Alignment explanation
Indices: 16656195--16656332 Score: 195
Period size: 70 Copynumber: 2.0 Consensus size: 70
16656185 CCTAGGTGTG
* ** ** * *
16656195 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGAGTGGAGGTCCATTTACTTTTCATCGC
1 GAGGCCCATTTACTTTTCACCGCATACAGAGGCCCAAGAGTGGAGGCCCATTTACTTTTCATCGC
16656260 ATTTA
66 ATTTA
* *
16656265 GAGGCCCATTTACTTTTCACCGCATACAGAGGCCCAAGTGTGGAGGCCCATTTACTTTTCATTGC
1 GAGGCCCATTTACTTTTCACCGCATACAGAGGCCCAAGAGTGGAGGCCCATTTACTTTTCATCGC
16656330 ATT
66 ATT
16656333 CAAAAACCCA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 59 1.00
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (70 bp):
GAGGCCCATTTACTTTTCACCGCATACAGAGGCCCAAGAGTGGAGGCCCATTTACTTTTCATCGC
ATTTA
Found at i:16656311 original size:42 final size:42
Alignment explanation
Indices: 16656265--16656621 Score: 428
Period size: 42 Copynumber: 8.5 Consensus size: 42
16656255 ATCGCATTTA
** ** *
16656265 GAGGCCCATTTACTTTTCACCGCATACAGAGGCCCAAGTGTG
1 GAGGCCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* * **
16656307 GAGGCCCATTTACTTTTCATTGCATTCAAAAACCCAGGTGTG
1 GAGGCCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* **
16656349 GAGGTCCATTTACTTTTCATTGCATAAAGAGGCCCAGGTGTG
1 GAGGCCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* * *
16656391 GAGGTCTATTTACTTTTCATTGCATTTAGAGGCCCAAGTGTG
1 GAGGCCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* *
16656433 GAGGTCCATTTACTTTTCATTGGATTTAGAGGCCCAGGTG-G
1 GAGGCCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* **
16656474 TGAGGCCCATTTACTTTTCATTGAATTTAGAGGCTTAGGTGTG
1 -GAGGCCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* * * *
16656517 GAGGCCCATTTACTTTTCTTTACATTTAGAGGCCTAGGTGGG
1 GAGGCCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* * * * *
16656559 GAGGTCCATTTACTTTTCCTTGCAATTGGAGGCCTAGGTGTG
1 GAGGCCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
*
16656601 GAGGTCCATTTACTTTTCATT
1 GAGGCCCATTTACTTTTCATT
16656622 ATAATCCTAA
Statistics
Matches: 277, Mismatches: 36, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
41 1 0.00
42 275 0.99
43 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (42 bp):
GAGGCCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
Found at i:16656350 original size:112 final size:112
Alignment explanation
Indices: 16656153--16656384 Score: 329
Period size: 112 Copynumber: 2.1 Consensus size: 112
16656143 CTCGAGTGTG
** ** * * *
16656153 GAGGCCCATTTACTTTTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGC
1 GAGGCCCATTTACTTTTCACCGCATACAGAGGCCCAAGTGTGGAGGCCCATTTACTTTTCATTGC
* * ** **
16656218 ATTTAGAGGCCCAGGAGTGGAGGTCCATTTACTTTTCATCGCATTTA
66 ATTCAAAAACCCAGGAGTGGAGGTCCATTTACTTTTCATCGCATAAA
16656265 GAGGCCCATTTACTTTTCACCGCATACAGAGGCCCAAGTGTGGAGGCCCATTTACTTTTCATTGC
1 GAGGCCCATTTACTTTTCACCGCATACAGAGGCCCAAGTGTGGAGGCCCATTTACTTTTCATTGC
* *
16656330 ATTCAAAAACCCAGGTGTGGAGGTCCATTTACTTTTCATTGCATAAA
66 ATTCAAAAACCCAGGAGTGGAGGTCCATTTACTTTTCATCGCATAAA
16656377 GAGGCCCA
1 GAGGCCCA
16656385 GGTGTGGAGG
Statistics
Matches: 105, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
112 105 1.00
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (112 bp):
GAGGCCCATTTACTTTTCACCGCATACAGAGGCCCAAGTGTGGAGGCCCATTTACTTTTCATTGC
ATTCAAAAACCCAGGAGTGGAGGTCCATTTACTTTTCATCGCATAAA
Found at i:16657648 original size:3 final size:3
Alignment explanation
Indices: 16657642--16657688 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
16657632 ATTATTATTA
*
16657642 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTA TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
16657689 TTTAGGGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.02, C:0.00, G:0.30, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:16658393 original size:145 final size:145
Alignment explanation
Indices: 16658123--16658595 Score: 641
Period size: 145 Copynumber: 3.3 Consensus size: 145
16658113 TTTTTAAATA
* *
16658123 ATTTCGAAATAAAAGCTTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAAGAGAAAGTTTA
1 ATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAAAAG-AAGTTTA
* * *
16658188 GATTTTTAAAAATAAAAATC---TATT--TT-TTTT--AG-AAAAGTTTAAATTTTTAAACAAAT
65 GATTTTTAAAAATAAAAATCTTTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTTTTAAATAAAG
16658244 TTTTGATTTTTTTAAC
130 TTTTGATTTTTTTAAC
* *
16658260 -TTTCGAAATAAAAGTTTGGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAAAAGAAGTTTAT
1 ATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAAAAGAAGTTTAG
*
16658324 ATTTTTAAAAATAAAAATCTGTTTTTTAGTTATTTTAAAGAAAAATTTTAAATTTTTAAATAAAG
66 ATTTTTAAAAATAAAAATCT-TTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTTTTAAATAAAG
16658389 TTTTGATTTTTTTAAC
130 TTTTGATTTTTTTAAC
* *
16658405 TATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAGTAGTGATTTTCATT-AAAAAAA-AA-TTTA
1 -ATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAAAAGAAGTTTA
* *
16658467 GATTTTTAAAAAATAAAAATATTTTTTTTAGTGATTTTAAAGAAAAAGTTTAAATTTTT-AATCA
65 GATTTTT-AAAAATAAAAAT-CTTTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTTTTAAAT-A
16658531 AAGTTTTGATTTTTTTTAAC
127 AAGTTTTGA-TTTTTTTAAC
** *
16658551 TATTTCGAAATAAAAGTTTTGATTTTGGAGTAAAGTAGTGATTTT
1 -ATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATTTT
16658596 GTTTTAATTA
Statistics
Matches: 303, Mismatches: 17, Indels: 23
0.88 0.05 0.07
Matches are distributed among these distances:
135 26 0.09
136 53 0.17
139 3 0.01
141 2 0.01
142 4 0.01
144 15 0.05
145 95 0.31
146 61 0.20
147 44 0.15
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.45
Consensus pattern (145 bp):
ATTTCGAAATAAAAGTTTTGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAAAAGAAGTTTAG
ATTTTTAAAAATAAAAATCTTTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTTTTAAATAAAGT
TTTGATTTTTTTAAC
Found at i:16664046 original size:21 final size:20
Alignment explanation
Indices: 16664003--16664047 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 20
16663993 TTAGTTTGTA
16664003 TTTATTTTATTATTTGTTTAT
1 TTTATTTTA-TATTTGTTTAT
16664024 TTTATTTTA-ATTGTGTTTAAT
1 TTTATTTTATATT-TGTTT-AT
16664045 TTT
1 TTT
16664048 TTATTTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.14
20 5 0.23
21 14 0.64
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (20 bp):
TTTATTTTATATTTGTTTAT
Found at i:16666334 original size:27 final size:27
Alignment explanation
Indices: 16666304--16666357 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
16666294 ACCCGACTCA
* *
16666304 ACCCGTTGACTCGAGTTGATCGACCTG
1 ACCCGTTGACCCAAGTTGATCGACCTG
*
16666331 ACCCGTTGACCCAAGTTGATTGACCTG
1 ACCCGTTGACCCAAGTTGATCGACCTG
16666358 TTGAATTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (27 bp):
ACCCGTTGACCCAAGTTGATCGACCTG
Found at i:16666932 original size:29 final size:30
Alignment explanation
Indices: 16666878--16666943 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
16666868 AGCCATGTGT
* *
16666878 TGTGTTAATTGTATGAATCTGATTTGAG-A
1 TGTGATAATGGTATGAATCTGATTTGAGTA
*
16666907 TGTGATAATGGTATG-ATCTTGTTTTGAGTTA
1 TGTGATAATGGTATGAATC-TGATTTGAG-TA
16666938 TGTGAT
1 TGTGAT
16666944 CACTTGGTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 3 0.10
29 21 0.68
31 7 0.23
ACGTcount: A:0.24, C:0.03, G:0.26, T:0.47
Consensus pattern (30 bp):
TGTGATAATGGTATGAATCTGATTTGAGTA
Found at i:16667011 original size:15 final size:15
Alignment explanation
Indices: 16666987--16667021 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
16666977 TGTGGATAAC
16666987 TTAA-AATAATGCGA
1 TTAATAATAATGCGA
16667001 TTAATAATAATGCGA
1 TTAATAATAATGCGA
16667016 TTAATA
1 TTAATA
16667022 TACTGTGTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (15 bp):
TTAATAATAATGCGA
Found at i:16669351 original size:30 final size:30
Alignment explanation
Indices: 16669290--16669352 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
16669280 TGTGTTGTAT
* * * *
16669290 GTGTTCATAACATGAGTGTTCATAGCTCCA
1 GTGTTCACAACATGAGTGCTCATAACACCA
* *
16669320 GTGTTCACAATATGAGTGCTCGTAACACCA
1 GTGTTCACAACATGAGTGCTCATAACACCA
16669350 GTG
1 GTG
16669353 CTCGCATCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (30 bp):
GTGTTCACAACATGAGTGCTCATAACACCA
Found at i:16671532 original size:37 final size:37
Alignment explanation
Indices: 16671491--16671561 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
16671481 AGTGACAGCC
*
16671491 TTGGGTGCATTCTAGAAATAA-TAA-TGCGGCGACAACT
1 TTGGGTGCAATC-A-AAATAACTAATTGCGGCGACAACT
*
16671528 TTGGGTGCAATCAAAATAACTAATTGTGGCGACA
1 TTGGGTGCAATCAAAATAACTAATTGCGGCGACA
16671562 TTATTAGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 6 0.20
36 4 0.13
37 20 0.67
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (37 bp):
TTGGGTGCAATCAAAATAACTAATTGCGGCGACAACT
Found at i:16672715 original size:18 final size:19
Alignment explanation
Indices: 16672692--16672735 Score: 74
Period size: 18 Copynumber: 2.4 Consensus size: 19
16672682 TGTCCTCAAA
16672692 CAAACAAAAG-AAGAAAAG
1 CAAACAAAAGCAAGAAAAG
16672710 CAAAC-AAAGCAAGAAAAG
1 CAAACAAAAGCAAGAAAAG
16672728 CAAACAAA
1 CAAACAAA
16672736 GGAGCTTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.17
18 18 0.75
19 2 0.08
ACGTcount: A:0.70, C:0.16, G:0.14, T:0.00
Consensus pattern (19 bp):
CAAACAAAAGCAAGAAAAG
Found at i:16688027 original size:3 final size:3
Alignment explanation
Indices: 16688019--16688074 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
16688009 TTCCCTTTAT
16688019 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
16688067 TTA TTA TT
1 TTA TTA TT
16688075 TTACACAATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:16692130 original size:6 final size:6
Alignment explanation
Indices: 16692110--16692168 Score: 73
Period size: 6 Copynumber: 9.3 Consensus size: 6
16692100 GGTTGGTAAA
* *
16692110 AAAGTC AACAGTC AAAGTC AAAGTC AATAATC AAAGTC AAAGTC AATGGTC
1 AAAGTC AA-AGTC AAAGTC AAAGTC AA-AGTC AAAGTC AAAGTC AA-AGTC
16692161 AAAGTC AA
1 AAAGTC AA
16692169 TGAGTTAGGC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
6 30 0.65
7 16 0.35
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.19
Consensus pattern (6 bp):
AAAGTC
Found at i:16692134 original size:19 final size:19
Alignment explanation
Indices: 16692110--16692168 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
16692100 GGTTGGTAAA
*
16692110 AAAGTCAACAGTCAAAGTC
1 AAAGTCAATAGTCAAAGTC
*
16692129 AAAGTCAATAATCAAAGTC
1 AAAGTCAATAGTCAAAGTC
*
16692148 AAAGTCAATGGTCAAAGTC
1 AAAGTCAATAGTCAAAGTC
16692167 AA
1 AA
16692169 TGAGTTAGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.19
Consensus pattern (19 bp):
AAAGTCAATAGTCAAAGTC
Found at i:16692170 original size:13 final size:12
Alignment explanation
Indices: 16692110--16692168 Score: 73
Period size: 13 Copynumber: 4.7 Consensus size: 12
16692100 GGTTGGTAAA
16692110 AAAGTCAACAGTC
1 AAAGTCAA-AGTC
16692123 AAAGTCAAAGTC
1 AAAGTCAAAGTC
*
16692135 AATAATCAAAGTC
1 AA-AGTCAAAGTC
*
16692148 AAAGTCAATGGTC
1 AAAGTCAA-AGTC
16692161 AAAGTCAA
1 AAAGTCAA
16692169 TGAGTTAGGC
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
12 11 0.27
13 30 0.73
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.19
Consensus pattern (12 bp):
AAAGTCAAAGTC
Found at i:16692207 original size:40 final size:41
Alignment explanation
Indices: 16692145--16692239 Score: 104
Period size: 40 Copynumber: 2.3 Consensus size: 41
16692135 AATAATCAAA
* * *
16692145 GTCAAAGTCAATGGTCAAAGTCAATGAGTTA-GGCCAATGG
1 GTCAAAGTCAACGGTCAAAGTCAACGAGTTATGGCCAACGG
* * * *
16692185 GTCAAAGTCAACGAGTC-GAGTCAACGGGTTATGGTCAGCGG
1 GTCAAAGTCAACG-GTCAAAGTCAACGAGTTATGGCCAACGG
16692226 GTCAAAGTCAACGG
1 GTCAAAGTCAACGG
16692240 ATTAGGTCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
40 24 0.52
41 22 0.48
ACGTcount: A:0.32, C:0.18, G:0.31, T:0.20
Consensus pattern (41 bp):
GTCAAAGTCAACGGTCAAAGTCAACGAGTTATGGCCAACGG
Found at i:16692213 original size:27 final size:27
Alignment explanation
Indices: 16692157--16692213 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
16692147 CAAAGTCAAT
* * *
16692157 GGTCAAAGTCAATGAGTTAGGCCAATG
1 GGTCAAAGTCAACGAGTGAGGCCAACG
*
16692184 GGTCAAAGTCAACGAGTCGA-GTCAACG
1 GGTCAAAGTCAACGAGT-GAGGCCAACG
16692211 GGT
1 GGT
16692214 TATGGTCAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.32, C:0.18, G:0.32, T:0.19
Consensus pattern (27 bp):
GGTCAAAGTCAACGAGTGAGGCCAACG
Found at i:16706648 original size:12 final size:13
Alignment explanation
Indices: 16706608--16706654 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
16706598 TTTGAATCAA
16706608 CCCAAACCTTTAG
1 CCCAAACCTTTAG
*
16706621 CCCAAACC--AAG
1 CCCAAACCTTTAG
16706632 ACCC-AACCTTTAG
1 -CCCAAACCTTTAG
16706645 CCCAAACCTT
1 CCCAAACCTT
16706655 AAACCCATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 6 0.21
12 6 0.21
13 16 0.57
ACGTcount: A:0.34, C:0.43, G:0.06, T:0.17
Consensus pattern (13 bp):
CCCAAACCTTTAG
Found at i:16711346 original size:26 final size:25
Alignment explanation
Indices: 16711294--16711353 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
16711284 AGGTTTTGAA
* *
16711294 ATTTTTAAGTTTCATTATTATTATT
1 ATTTTTAATTTTAATTATTATTATT
16711319 ATTTTTAATTTTAATTTAATTATT-TT
1 ATTTTTAATTTTAA-TT-ATTATTATT
*
16711345 ATATTTAAT
1 ATTTTTAAT
16711354 AAAGGGGGTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 12 0.40
26 12 0.40
27 6 0.20
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (25 bp):
ATTTTTAATTTTAATTATTATTATT
Found at i:16721089 original size:21 final size:21
Alignment explanation
Indices: 16721060--16721112 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
16721050 TCAGTCACTT
16721060 AAAA-AAGAAAAAGAAAAGA-
1 AAAAGAAGAAAAAGAAAAGAG
* *
16721079 AAAAGGAAGAAGAGGAAAAGAG
1 AAAA-GAAGAAAAAGAAAAGAG
16721101 AAAAGAAGAAAA
1 AAAAGAAGAAAA
16721113 TAATATATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 4 0.14
21 20 0.71
22 4 0.14
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (21 bp):
AAAAGAAGAAAAAGAAAAGAG
Found at i:16721097 original size:15 final size:15
Alignment explanation
Indices: 16721060--16721112 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
16721050 TCAGTCACTT
16721060 AAAA-AAGAAAA-AG
1 AAAAGAAGAAAAGAG
16721073 AAAAG-A-AAAAG-G
1 AAAAGAAGAAAAGAG
*
16721085 AAGAAGAGGAAAAGAG
1 AA-AAGAAGAAAAGAG
16721101 AAAAGAAGAAAA
1 AAAAGAAGAAAA
16721113 TAATATATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
12 7 0.22
13 8 0.25
15 14 0.44
16 3 0.09
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (15 bp):
AAAAGAAGAAAAGAG
Found at i:16728821 original size:22 final size:22
Alignment explanation
Indices: 16728796--16728846 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
16728786 CTTAGCTAAC
16728796 ATAACCCAAA-CATTTAAACCCA
1 ATAACCCAAACCATTT-AACCCA
* *
16728818 ATAATCCAAACCCATTTGACCCA
1 ATAACCCAAA-CCATTTAACCCA
16728841 ATAACC
1 ATAACC
16728847 TAATTAAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 9 0.38
23 10 0.42
24 5 0.21
ACGTcount: A:0.45, C:0.33, G:0.02, T:0.20
Consensus pattern (22 bp):
ATAACCCAAACCATTTAACCCA
Found at i:16728928 original size:20 final size:20
Alignment explanation
Indices: 16728902--16728971 Score: 95
Period size: 20 Copynumber: 3.5 Consensus size: 20
16728892 ACTGTTGACC
*
16728902 GACCGTTGACCGTTGACTTT
1 GACCATTGACCGTTGACTTT
* *
16728922 AACCGTTGACCGTTGACTTT
1 GACCATTGACCGTTGACTTT
* *
16728942 GACCATCGACCATTGACTTT
1 GACCATTGACCGTTGACTTT
16728962 GACCATTGAC
1 GACCATTGAC
16728972 TTTTTTTTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (20 bp):
GACCATTGACCGTTGACTTT
Found at i:16728967 original size:13 final size:13
Alignment explanation
Indices: 16728949--16728974 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16728939 TTTGACCATC
16728949 GACCATTGACTTT
1 GACCATTGACTTT
16728962 GACCATTGACTTT
1 GACCATTGACTTT
16728975 TTTTTGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
GACCATTGACTTT
Found at i:16731896 original size:14 final size:15
Alignment explanation
Indices: 16731877--16731906 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
16731867 ATGAAGAAGA
16731877 AGGAGAAGGA-CCTG
1 AGGAGAAGGATCCTG
16731891 AGGAGAAGGATCCTG
1 AGGAGAAGGATCCTG
16731906 A
1 A
16731907 AGTTGAGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.37, C:0.13, G:0.40, T:0.10
Consensus pattern (15 bp):
AGGAGAAGGATCCTG
Found at i:16734139 original size:18 final size:17
Alignment explanation
Indices: 16734102--16734149 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
16734092 AACTAAATTA
* * *
16734102 ACAAAAGAAAGGTAATG
1 ACAAAAAAAATGTGATG
16734119 ACAAAATAAAATGTGATG
1 ACAAAA-AAAATGTGATG
*
16734137 ACAATAAAAATGT
1 ACAAAAAAAATGT
16734150 ATGCAACCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.58, C:0.06, G:0.17, T:0.19
Consensus pattern (17 bp):
ACAAAAAAAATGTGATG
Found at i:16734148 original size:17 final size:18
Alignment explanation
Indices: 16734116--16734149 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16734106 AAGAAAGGTA
16734116 ATGACAAAATAAAATGTG
1 ATGACAAAATAAAATGTG
*
16734134 ATGACAATA-AAAATGT
1 ATGACAAAATAAAATGT
16734150 ATGCAACCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.06, G:0.15, T:0.24
Consensus pattern (18 bp):
ATGACAAAATAAAATGTG
Found at i:16736494 original size:15 final size:14
Alignment explanation
Indices: 16736471--16736504 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
16736461 CATAAAATTA
*
16736471 AAAAGGAAACAAGT
1 AAAAGGAAACAAAT
16736485 AAAAGTGAAACAAAT
1 AAAAG-GAAACAAAT
16736500 AAAAG
1 AAAAG
16736505 AAAATGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.68, C:0.06, G:0.18, T:0.09
Consensus pattern (14 bp):
AAAAGGAAACAAAT
Found at i:16737656 original size:26 final size:26
Alignment explanation
Indices: 16737620--16737922 Score: 317
Period size: 27 Copynumber: 11.3 Consensus size: 26
16737610 ATACGGAACA
* *
16737620 ATACTCATCCAGCACAAAAGTGCGGT
1 ATACTCGTCCAGCACAGAAGTGCGGT
16737646 ATACTCGTCCAGCA-ACGAAGTGCGGT
1 ATACTCGTCCAGCACA-GAAGTGCGGT
* * *
16737672 AAAAACTCGTCCAGCACTGAAGTGCGAT
1 --ATACTCGTCCAGCACAGAAGTGCGGT
* * * *
16737700 AAAACTCATCCAGAACATAAGTGCGGT
1 -ATACTCGTCCAGCACAGAAGTGCGGT
*
16737727 AATACTCGTCCAGCACAAAAGTGCGGT
1 -ATACTCGTCCAGCACAGAAGTGCGGT
16737754 ATACTCGTCCAGCA-ACGAAGTGCGGT
1 ATACTCGTCCAGCACA-GAAGTGCGGT
16737780 ATACTCGTCCAGCA-ATGAAGTGCGGT
1 ATACTCGTCCAGCACA-GAAGTGCGGT
16737806 ATACTCGTCCAGCA-ACGAAGTGCGGT
1 ATACTCGTCCAGCACA-GAAGTGCGGT
* *
16737832 AAAAACTCGTCCAGCACTGAAGTGCGGT
1 --ATACTCGTCCAGCACAGAAGTGCGGT
* *
16737860 AATACTCGTCCAACACAAAAGTGCGGT
1 -ATACTCGTCCAGCACAGAAGTGCGGT
* *
16737887 ATAACTCGTCCAACACAAAAGTGCGGT
1 AT-ACTCGTCCAGCACAGAAGTGCGGT
16737914 ATAACTCGT
1 AT-ACTCGT
16737923 AAGTGCACAA
Statistics
Matches: 245, Mismatches: 23, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
25 2 0.01
26 97 0.40
27 101 0.41
28 45 0.18
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.19
Consensus pattern (26 bp):
ATACTCGTCCAGCACAGAAGTGCGGT
Found at i:16737734 original size:54 final size:53
Alignment explanation
Indices: 16737619--16737922 Score: 355
Period size: 54 Copynumber: 5.7 Consensus size: 53
16737609 TATACGGAAC
* **
16737619 AATACTCATCCAGCACAAAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGT
1 AATACTCGTCCAGCACTGAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGT
* * * * *
16737672 AAAAACTCGTCCAGCACTGAAGTGCGATAAAACTCATCCAG-AACATAAGTGCGGT
1 -AATACTCGTCCAGCACTGAAGTGCGGT-ATACTCGTCCAGCAAC-GAAGTGCGGT
**
16737727 AATACTCGTCCAGCACAAAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGT
1 AATACTCGTCCAGCACTGAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGT
*
16737780 -ATACTCGTCCAGCAATGAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGT
1 AATACTCGTCCAGCACTGAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGT
* * *
16737832 AAAAACTCGTCCAGCACTGAAGTGCGGTAATACTCGTCCAAC-ACAAAAGTGCGGT
1 -AATACTCGTCCAGCACTGAAGTGCGGT-ATACTCGTCCAGCAAC-GAAGTGCGGT
* **
16737887 -ATAACTCGTCCAACACAAAAGTGCGGTATAACTCGT
1 AAT-ACTCGTCCAGCACTGAAGTGCGGTAT-ACTCGT
16737923 AAGTGCACAA
Statistics
Matches: 215, Mismatches: 26, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
52 49 0.23
53 22 0.10
54 104 0.48
55 40 0.19
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.19
Consensus pattern (53 bp):
AATACTCGTCCAGCACTGAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGT
Found at i:16737896 original size:160 final size:161
Alignment explanation
Indices: 16737620--16737922 Score: 488
Period size: 160 Copynumber: 1.9 Consensus size: 161
16737610 ATACGGAACA
16737620 ATACTCATCCAGCACAAAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGTAAAAACTCGTCCA
1 ATACTCATCCAGCACAAAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGTAAAAACTCGTCCA
* *
16737685 GCACTGAAGTGCGATAAAACTCATCCAGAACATAAGTGCGGTAATACTCGTCCAGCACAAAAGTG
66 GCACTGAAGTGCGATAAAACTCATCCAGAACAAAAGTGCGGTAATACTCGTCCAACACAAAAGTG
16737750 CGGTAT-ACTCGTCCAGCAACGAAGTGCGGT
131 CGGTATAACTCGTCCAGCAACGAAGTGCGGT
* *
16737780 ATACTCGTCCAGCA-ATGAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGTAAAAACTCGTCC
1 ATACTCATCCAGCACA-AAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGTAAAAACTCGTCC
* * *
16737844 AGCACTGAAGTGCGGTAATACTCGTCCA-ACACAAAAGTGCGGT-ATAACTCGTCCAACACAAAA
65 AGCACTGAAGTGCGATAAAACTCATCCAGA-ACAAAAGTGCGGTAAT-ACTCGTCCAACACAAAA
16737907 GTGCGGTATAACTCGT
128 GTGCGGTATAACTCGT
16737923 AAGTGCACAA
Statistics
Matches: 132, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
159 4 0.03
160 122 0.92
161 6 0.05
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.19
Consensus pattern (161 bp):
ATACTCATCCAGCACAAAAGTGCGGTATACTCGTCCAGCAACGAAGTGCGGTAAAAACTCGTCCA
GCACTGAAGTGCGATAAAACTCATCCAGAACAAAAGTGCGGTAATACTCGTCCAACACAAAAGTG
CGGTATAACTCGTCCAGCAACGAAGTGCGGT
Found at i:16738674 original size:14 final size:15
Alignment explanation
Indices: 16738656--16738693 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
16738646 GTTTTAGTGA
16738656 ACATGTTTCCTTTTT
1 ACATGTTTCCTTTTT
16738671 -CATGTTT-CTTTTT
1 ACATGTTTCCTTTTT
16738684 ACTATGTTTC
1 AC-ATGTTTC
16738694 ATCCAATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
13 6 0.30
14 8 0.40
15 6 0.30
ACGTcount: A:0.13, C:0.18, G:0.08, T:0.61
Consensus pattern (15 bp):
ACATGTTTCCTTTTT
Found at i:16746092 original size:12 final size:12
Alignment explanation
Indices: 16746075--16746103 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
16746065 AAACACAAAG
16746075 TAATTGCAAATT
1 TAATTGCAAATT
16746087 TAATTGCAAATT
1 TAATTGCAAATT
16746099 TAATT
1 TAATT
16746104 CCTCAGCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (12 bp):
TAATTGCAAATT
Found at i:16747651 original size:27 final size:27
Alignment explanation
Indices: 16747609--16747674 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
16747599 GATAACTAAC
*
16747609 AAATACTAATCTAATACTAATAGAATA
1 AAATACTAATCCAATACTAATAGAATA
*
16747636 AAATGCTAATCCAATACTAATAGAATAGA
1 AAATACTAATCCAATACTAATAGAAT--A
16747665 AAATACTAAT
1 AAATACTAAT
16747675 ATAATAGAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 24 0.71
29 10 0.29
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (27 bp):
AAATACTAATCCAATACTAATAGAATA
Found at i:16747671 original size:18 final size:18
Alignment explanation
Indices: 16747648--16747684 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
16747638 ATGCTAATCC
16747648 AATACTAATAGAATAGAA
1 AATACTAATAGAATAGAA
*
16747666 AATACTAATATAATAGAA
1 AATACTAATAGAATAGAA
16747684 A
1 A
16747685 GAAAAGAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.05, G:0.08, T:0.24
Consensus pattern (18 bp):
AATACTAATAGAATAGAA
Found at i:16749134 original size:13 final size:13
Alignment explanation
Indices: 16749118--16749143 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16749108 AAAAATTTCA
16749118 AATTTTAATTTTT
1 AATTTTAATTTTT
16749131 AATTTTAATTTTT
1 AATTTTAATTTTT
16749144 TTCAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
AATTTTAATTTTT
Found at i:16757089 original size:23 final size:23
Alignment explanation
Indices: 16757061--16757107 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
16757051 ATCCAATCTA
16757061 GGGAATCCTGAGTGGCTACTAAG
1 GGGAATCCTGAGTGGCTACTAAG
16757084 GGGAATCCTGAGTGGCTACTAAG
1 GGGAATCCTGAGTGGCTACTAAG
16757107 G
1 G
16757108 ATTGACGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.36, T:0.21
Consensus pattern (23 bp):
GGGAATCCTGAGTGGCTACTAAG
Found at i:16759164 original size:2 final size:2
Alignment explanation
Indices: 16759157--16759185 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
16759147 CATTATCCAT
16759157 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
16759186 TGCTTCTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:16762015 original size:28 final size:28
Alignment explanation
Indices: 16761962--16762053 Score: 105
Period size: 28 Copynumber: 3.3 Consensus size: 28
16761952 TTAACAGAAA
* * * *
16761962 CAACCTCACAAGCCTCC-TTAATAGAGC
1 CAACCACAAAAGCTTCCTTTAATAGAGT
*
16761989 CAGCCACAAAAGCTTCCTTTAATAGAGT
1 CAACCACAAAAGCTTCCTTTAATAGAGT
* * *
16762017 CAATCACAGAGGCTTCCTTTAATAGAGT
1 CAACCACAAAAGCTTCCTTTAATAGAGT
16762045 CAACCACAA
1 CAACCACAA
16762054 GGGTTTTCTG
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
27 13 0.25
28 40 0.75
ACGTcount: A:0.36, C:0.29, G:0.13, T:0.22
Consensus pattern (28 bp):
CAACCACAAAAGCTTCCTTTAATAGAGT
Found at i:16762163 original size:28 final size:28
Alignment explanation
Indices: 16762132--16762219 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 28
16762122 TCAGAGTTTT
16762132 GCCACAAAGGCATTTCTTTGAGAGGTTC
1 GCCACAAAGGCATTTCTTTGAGAGGTTC
* * *
16762160 GCCACAAAGGC-TTATCTTTCAAGAGATTT
1 GCCACAAAGGCATT-TCTTT-GAGAGGTTC
* * *
16762189 GCCACAAAGGCAATCCTTTGAAAGGTTC
1 GCCACAAAGGCATTTCTTTGAGAGGTTC
16762217 GCC
1 GCC
16762220 GTGAAGGCTT
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
27 2 0.04
28 24 0.50
29 21 0.44
30 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (28 bp):
GCCACAAAGGCATTTCTTTGAGAGGTTC
Found at i:16762194 original size:29 final size:28
Alignment explanation
Indices: 16762119--16762200 Score: 103
Period size: 28 Copynumber: 2.9 Consensus size: 28
16762109 AAGGTGTGTC
*
16762119 CTTTCAGAGTTTTGCCACAAAGGCATTT
1 CTTTCAGAGATTTGCCACAAAGGCATTT
* * *
16762147 CTTTGAGAGGTTCGCCACAAAGGC-TTAT
1 CTTTCAGAGATTTGCCACAAAGGCATT-T
16762175 CTTTCAAGAGATTTGCCACAAAGGCA
1 CTTTC-AGAGATTTGCCACAAAGGCA
16762201 ATCCTTTGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 2 0.04
28 26 0.58
29 17 0.38
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (28 bp):
CTTTCAGAGATTTGCCACAAAGGCATTT
Found at i:16762282 original size:57 final size:57
Alignment explanation
Indices: 16762124--16762284 Score: 209
Period size: 57 Copynumber: 2.8 Consensus size: 57
16762114 GTGTCCTTTC
* * * * ** *
16762124 AGAGTTTTGCCACAAAGGCATTTCTTTGAGAGGTTCGCCACAAAGGCTTATCTTTCA
1 AGAGATTTGCCACAAAGGCAATCCTTTGAAAGGTTCGCCATGAAGGCTTATCATTCA
*
16762181 AGAGATTTGCCACAAAGGCAATCCTTTGAAAGGTTCGCCGTGAAGGCTT-TCATTCTA
1 AGAGATTTGCCACAAAGGCAATCCTTTGAAAGGTTCGCCATGAAGGCTTATCATTC-A
*
16762238 AGAGATTAT-CCACAAAGACAATCCTTTGAAAGGTTCGCCATGAAGGC
1 AGAGATT-TGCCACAAAGGCAATCCTTTGAAAGGTTCGCCATGAAGGC
16762285 ATTCCTATCT
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
56 5 0.05
57 86 0.93
58 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (57 bp):
AGAGATTTGCCACAAAGGCAATCCTTTGAAAGGTTCGCCATGAAGGCTTATCATTCA
Found at i:16765055 original size:19 final size:18
Alignment explanation
Indices: 16765027--16765065 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
16765017 ATATGTAAAA
*
16765027 AATCAGAAAAATATATAT
1 AATCAGAAAAAAATATAT
16765045 AATCTAGAAAAAAATATAT
1 AATC-AGAAAAAAATATAT
16765064 AA
1 AA
16765066 ATTATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (18 bp):
AATCAGAAAAAAATATAT
Found at i:16765164 original size:12 final size:12
Alignment explanation
Indices: 16765147--16765172 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16765137 ATATTACTAC
16765147 AAAAAATGTAAA
1 AAAAAATGTAAA
16765159 AAAAAATGTAAA
1 AAAAAATGTAAA
16765171 AA
1 AA
16765173 TTATAAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (12 bp):
AAAAAATGTAAA
Found at i:16765221 original size:19 final size:19
Alignment explanation
Indices: 16765186--16765228 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
16765176 TAAGATTGTA
*
16765186 AAAAATATTTTAAAAATTTT
1 AAAAATATTTT-AAAATTCT
16765206 AAAAATAATTTT-AAATTCT
1 AAAAAT-ATTTTAAAATTCT
16765225 AAAA
1 AAAA
16765229 TGGTATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 10 0.48
20 6 0.29
21 5 0.24
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAAATATTTTAAAATTCT
Found at i:16770199 original size:20 final size:20
Alignment explanation
Indices: 16770153--16770202 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
16770143 ATGAAATTTT
*
16770153 GGTATCGATAAAAATTAATA
1 GGTATCGATAAAAATTAAGA
* * *
16770173 GGCATCGATAAAATTTTAGA
1 GGTATCGATAAAAATTAAGA
16770193 GGTATCGATA
1 GGTATCGATA
16770203 TTGATTGTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (20 bp):
GGTATCGATAAAAATTAAGA
Found at i:16778952 original size:23 final size:25
Alignment explanation
Indices: 16778926--16778971 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
16778916 CCAATTAGGG
16778926 AATTAT-TGTTTAG-ATTTAATTCT
1 AATTATCTGTTTAGAATTTAATTCT
*
16778949 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
16778972 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCT
Found at i:16782813 original size:10 final size:10
Alignment explanation
Indices: 16782798--16782845 Score: 69
Period size: 10 Copynumber: 4.8 Consensus size: 10
16782788 TTTTTAAATA
16782798 AAAAAAATTC
1 AAAAAAATTC
* *
16782808 AAAAAAGTTG
1 AAAAAAATTC
*
16782818 AAAAACATTC
1 AAAAAAATTC
16782828 AAAAAAATTC
1 AAAAAAATTC
16782838 AAAAAAAT
1 AAAAAAAT
16782846 ATTAGTACAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.69, C:0.08, G:0.04, T:0.19
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:16782866 original size:6 final size:6
Alignment explanation
Indices: 16782855--16782897 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
16782845 TATTAGTACA
* * *
16782855 TTTATT TTTATT TTCATT TTCATT TTTAGT TTTA-T TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
16782898 ATTATGCACT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
5 5 0.15
6 28 0.85
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:16782873 original size:12 final size:11
Alignment explanation
Indices: 16782855--16782897 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
16782845 TATTAGTACA
16782855 TTTATTTTTAT
1 TTTATTTTTAT
*
16782866 TTTCATTTTCATT
1 TTT-ATTTTTA-T
*
16782879 TTTAGTTTTAT
1 TTTATTTTTAT
16782890 TTTATTTT
1 TTTATTTT
16782898 ATTATGCACT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 11 0.42
12 11 0.42
13 4 0.15
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:16782879 original size:18 final size:17
Alignment explanation
Indices: 16782855--16782897 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
16782845 TATTAGTACA
16782855 TTTATTTTTA-TTTTCAT
1 TTTATTTTTAGTTTT-AT
16782872 TTTCATTTTTAGTTTTAT
1 TTT-ATTTTTAGTTTTAT
16782890 TTTATTTT
1 TTTATTTT
16782898 ATTATGCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.33
18 12 0.50
19 4 0.17
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTATTTTTAGTTTTAT
Found at i:16783384 original size:26 final size:26
Alignment explanation
Indices: 16783333--16783384 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16783323 AGCATGACGA
*
16783333 GTTGTCTTCAGAATTAAATATTTTAG
1 GTTGTCTTCAGAATTAAATATATTAG
*
16783359 GTTGTCTTCATGAATTGAAT-TATTAG
1 GTTGTCTTCA-GAATTAAATATATTAG
16783385 CTTTAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (26 bp):
GTTGTCTTCAGAATTAAATATATTAG
Found at i:16783853 original size:18 final size:18
Alignment explanation
Indices: 16783812--16783855 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
16783802 AAAGAAAGTC
16783812 AAAAAGAAAATTTGAAAA
1 AAAAAGAAAATTTGAAAA
*
16783830 ATAAAATAAAA-TTGAGAAA
1 A-AAAAGAAAATTTGA-AAA
16783849 AAAAAGA
1 AAAAAGA
16783856 CAAAAATATG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (18 bp):
AAAAAGAAAATTTGAAAA
Found at i:16784875 original size:23 final size:23
Alignment explanation
Indices: 16784849--16784892 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
16784839 CCAATTAGGA
16784849 AATTATTGTTTAG-ATTTAATTCT
1 AATTATT-TTTAGAATTTAATTCT
*
16784872 AATTCTTTTTAGAATTTAATT
1 AATTATTTTTAGAATTTAATT
16784893 TGGATCCAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.57
Consensus pattern (23 bp):
AATTATTTTTAGAATTTAATTCT
Found at i:16787372 original size:20 final size:21
Alignment explanation
Indices: 16787324--16787373 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
16787314 AAACTCGATG
16787324 AGTATCGATACTTTCTAAATA
1 AGTATCGATACTTTCTAAATA
* *
16787345 AGTATCGATATTTTTTAAA-A
1 AGTATCGATACTTTCTAAATA
*
16787365 ATTATCGAT
1 AGTATCGAT
16787374 TAAATATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (21 bp):
AGTATCGATACTTTCTAAATA
Found at i:16793660 original size:21 final size:21
Alignment explanation
Indices: 16793636--16793736 Score: 77
Period size: 20 Copynumber: 5.0 Consensus size: 21
16793626 GCATGGAGCT
*
16793636 ATTTTGACTTGTTTGAAAAAC
1 ATTTTGACTTGTTTGAAAATC
** *
16793657 ATTTTGAAGTG-TT-AAAATG
1 ATTTTGACTTGTTTGAAAATC
*
16793676 ATTTTGACTTGGTTG-AAATC
1 ATTTTGACTTGTTTGAAAATC
*
16793696 ATTTT-CCTTTGTTTG-AAATC
1 ATTTTGAC-TTGTTTGAAAATC
* *
16793716 ATTTTAACTTGATTTTAAAAT
1 ATTTTGACTTG-TTTGAAAAT
16793737 TGTTTCAAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
19 14 0.22
20 32 0.51
21 13 0.21
22 4 0.06
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.48
Consensus pattern (21 bp):
ATTTTGACTTGTTTGAAAATC
Done.