Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 59 of 135
Found at i:17232504 original size:29 final size:29
Alignment explanation
Indices: 17232471--17232533 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
17232461 AGAACATGGT
* *
17232471 TCTTGGGATTGCCGGCAAGATCTATCACA
1 TCTTGGAATTGCCAGCAAGATCTATCACA
* *
17232500 TCTTGGAATTGTCAGCAGGATCTATCACA
1 TCTTGGAATTGCCAGCAAGATCTATCACA
17232529 TCTTG
1 TCTTG
17232534 AAATGTGTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (29 bp):
TCTTGGAATTGCCAGCAAGATCTATCACA
Found at i:17234245 original size:24 final size:24
Alignment explanation
Indices: 17234218--17234296 Score: 131
Period size: 24 Copynumber: 3.3 Consensus size: 24
17234208 CTTAGCCCAC
*
17234218 ACGAGCCTAGAATGGTTAGCTCTT
1 ACGAGCCCAGAATGGTTAGCTCTT
* *
17234242 ACGAGCCCATAATGGTTAACTCTT
1 ACGAGCCCAGAATGGTTAGCTCTT
17234266 ACGAGCCCAGAATGGTTAGCTCTT
1 ACGAGCCCAGAATGGTTAGCTCTT
17234290 ACGAGCC
1 ACGAGCC
17234297 AGATAGAGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (24 bp):
ACGAGCCCAGAATGGTTAGCTCTT
Found at i:17239553 original size:378 final size:379
Alignment explanation
Indices: 17238861--17239621 Score: 1299
Period size: 378 Copynumber: 2.0 Consensus size: 379
17238851 ATGAAGGCCA
17238861 TTTTGGTGGAACAAGGACTACTGCAAAGGTTTTACAGTCAAGATTTTATTGGCCCACATTGTTTC
1 TTTTGGTGGAACAAGGACTACTGCAAAGGTTTTACAGTCAAGATTTTATTGGCCCACATTGTTTC
* *
17238926 GAGACGCTCACAACTTTGCACAACAATGTGATCGTTGTCAACGCATTGGTTCAATATCTCGACGC
66 GAGACGCTCACAACTTCGCACAACAATGTGATCGTTGTCAACACATTGGTTCAATATCTCGACGC
*
17238991 AATGAGATGCTCCAACAACCCATCATAGAGGTAGAGCTCTTTGATGTTTAGGGTATAGACTTTAT
131 AATGAGATGCTCCAACAACCCATCATAGAGGTAAAGCTCTTTGATGTTTAGGGTATAGACTTTAT
* * *
17239056 GAGACCATTTCCAAACTTTTTTGGAAATGCGTATATTTTGGTGGCTGTTGACTACGTCTCGAAGT
196 GAGACCATTTCCAAACTCTTTTGAAAATGCGTATATTTTAGTGGCTGTTGACTACGTCTCGAAGT
**
17239121 GGATCAAGGCTATTGCGATGCCAAAAGATGATGCTCAGACGGTATTAAAGTTCTTTCATGCATAC
261 GGATCAAGGCTATTGCGATGCCAAAAGATGATGCTCAGACGGTATTAAAGTTCTTTCACACATAC
*
17239186 ATCCTCACGAGATTTGGAACACCGAGAGCGTTGATAAGTGACCAAGGCACCCAT
326 ATCCTCACGAGATTTGAAACACCGAGAGCGTTGATAAGTGACCAAGGCACCCAT
** * * *
17239240 TTTTGGTGGAACAAGGACTGTTGCGAAGGTTTTACAGTCAGGATTTTATTTG-CCACATTGTTTC
1 TTTTGGTGGAACAAGGACTACTGCAAAGGTTTTACAGTCAAGATTTTATTGGCCCACATTGTTTC
*
17239304 GAGACGCTCACAACTTCGCACAACAATGTGATCGTTGTCAACACATTGGTTTAATATCTCGACGC
66 GAGACGCTCACAACTTCGCACAACAATGTGATCGTTGTCAACACATTGGTTCAATATCTCGACGC
* * * *
17239369 ATTGAGATGCTCTAACAACCCATGATAGAGGTAAAGCTCTTTGATGTTTGGGGTATAGACTTTAT
131 AATGAGATGCTCCAACAACCCATCATAGAGGTAAAGCTCTTTGATGTTTAGGGTATAGACTTTAT
* *
17239434 GAGACCATTTCCAAACTCTTTTGAAAATGTGTATATTTTAGTGGCTGTTGACTATGTCTCGAAGT
196 GAGACCATTTCCAAACTCTTTTGAAAATGCGTATATTTTAGTGGCTGTTGACTACGTCTCGAAGT
* *
17239499 GGATCGAGGCTATTGCGATGCCAAAAGATGATGCTCAGACGGTATTGAAGTTCTTTCACACATAC
261 GGATCAAGGCTATTGCGATGCCAAAAGATGATGCTCAGACGGTATTAAAGTTCTTTCACACATAC
*
17239564 ATCCTCACGAGATTTGAAACACCGAGAGTGTTGATAAGTGACCAAGGCACCCAT
326 ATCCTCACGAGATTTGAAACACCGAGAGCGTTGATAAGTGACCAAGGCACCCAT
17239618 TTTT
1 TTTT
17239622 ATAATAACCA
Statistics
Matches: 358, Mismatches: 24, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
378 311 0.87
379 47 0.13
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (379 bp):
TTTTGGTGGAACAAGGACTACTGCAAAGGTTTTACAGTCAAGATTTTATTGGCCCACATTGTTTC
GAGACGCTCACAACTTCGCACAACAATGTGATCGTTGTCAACACATTGGTTCAATATCTCGACGC
AATGAGATGCTCCAACAACCCATCATAGAGGTAAAGCTCTTTGATGTTTAGGGTATAGACTTTAT
GAGACCATTTCCAAACTCTTTTGAAAATGCGTATATTTTAGTGGCTGTTGACTACGTCTCGAAGT
GGATCAAGGCTATTGCGATGCCAAAAGATGATGCTCAGACGGTATTAAAGTTCTTTCACACATAC
ATCCTCACGAGATTTGAAACACCGAGAGCGTTGATAAGTGACCAAGGCACCCAT
Found at i:17253421 original size:56 final size:56
Alignment explanation
Indices: 17253347--17253484 Score: 197
Period size: 56 Copynumber: 2.5 Consensus size: 56
17253337 ATAACAAGCA
* * * *
17253347 AAGACCATATTGTCTAAGACCTAGTTCAGATGGCTATGACATCATAT-AGGGAAATG
1 AAGACCATATTGTGTAAGACCTAGTCCAAATAGCTATGACATCATATGA-GGAAATG
* *
17253403 AAGATCATATTGTGTAAGACCTAGTCCAAATAGCTATGGCATCATATGAGGAAATG
1 AAGACCATATTGTGTAAGACCTAGTCCAAATAGCTATGACATCATATGAGGAAATG
*
17253459 AAGACCACATTGTGTAAGACCTAGTC
1 AAGACCATATTGTGTAAGACCTAGTC
17253485 TGAGACTATG
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
56 72 0.99
57 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (56 bp):
AAGACCATATTGTGTAAGACCTAGTCCAAATAGCTATGACATCATATGAGGAAATG
Found at i:17253696 original size:29 final size:28
Alignment explanation
Indices: 17253611--17253701 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 28
17253601 TTACCTAAGA
17253611 GTGATGCCTTTGTGGCTGAATCTGTTATAT
1 GTGA-GCCTTTGTGGCTG-ATCTGTTATAT
* * * *
17253641 GAGAGTCTTTGTGGTTGATTTTGTTATAT
1 GTGAGCCTTTGTGGCTGA-TCTGTTATAT
* *
17253670 GTGACGCCTTTGTCGCTGATCTATTATAT
1 GTGA-GCCTTTGTGGCTGATCTGTTATAT
17253699 GTG
1 GTG
17253702 GTGCATTTGT
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
28 1 0.02
29 34 0.69
30 14 0.29
ACGTcount: A:0.16, C:0.12, G:0.26, T:0.45
Consensus pattern (28 bp):
GTGAGCCTTTGTGGCTGATCTGTTATAT
Found at i:17253710 original size:29 final size:30
Alignment explanation
Indices: 17253664--17253728 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
17253654 GTTGATTTTG
*
17253664 TTATATGTGACGCCTTTGTCGCT-G-ATCTA
1 TTATATGTGACGCATTTGT-GCTGGAATCTA
** *
17253693 TTATATGTGGTGCATTTGTGGTGGAATCTA
1 TTATATGTGACGCATTTGTGCTGGAATCTA
17253723 TTATAT
1 TTATAT
17253729 AAAAGCCTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 2 0.07
29 17 0.57
30 11 0.37
ACGTcount: A:0.20, C:0.12, G:0.23, T:0.45
Consensus pattern (30 bp):
TTATATGTGACGCATTTGTGCTGGAATCTA
Found at i:17253727 original size:59 final size:59
Alignment explanation
Indices: 17253611--17253728 Score: 132
Period size: 59 Copynumber: 2.0 Consensus size: 59
17253601 TTACCTAAGA
* * * * * * *
17253611 GTGATGCCTTTGTGGCTGAATCTGTTATATGAGAGTCTTTGTGGTTGATTTTGTTATAT
1 GTGACGCCTTTGTCGCTGAATCTATTATATGAGAGTCTTTGTGGTGGAATCTATTATAT
*
17253670 GTGACGCCTTTGTCGCTG-ATCTATTATATGTG-GTGCATTTGTGGTGGAATCTATTATAT
1 GTGACGCCTTTGTCGCTGAATCTATTATATGAGAGT-C-TTTGTGGTGGAATCTATTATAT
17253729 AAAAGCCTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
57 2 0.04
58 13 0.27
59 34 0.69
ACGTcount: A:0.18, C:0.11, G:0.26, T:0.45
Consensus pattern (59 bp):
GTGACGCCTTTGTCGCTGAATCTATTATATGAGAGTCTTTGTGGTGGAATCTATTATAT
Found at i:17254448 original size:14 final size:14
Alignment explanation
Indices: 17254429--17254461 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
17254419 AAGGTCTTAA
17254429 GACTATGTGATATC
1 GACTATGTGATATC
17254443 GACTATGTGATATC
1 GACTATGTGATATC
17254457 GACTA
1 GACTA
17254462 AGTTATATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (14 bp):
GACTATGTGATATC
Found at i:17254469 original size:14 final size:14
Alignment explanation
Indices: 17254429--17254469 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
17254419 AAGGTCTTAA
*
17254429 GACTATGTGATATC
1 GACTAAGTGATATC
*
17254443 GACTATGTGATATC
1 GACTAAGTGATATC
*
17254457 GACTAAGTTATAT
1 GACTAAGTGATAT
17254470 GGAAAGCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.37
Consensus pattern (14 bp):
GACTAAGTGATATC
Found at i:17257175 original size:22 final size:21
Alignment explanation
Indices: 17257137--17257180 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
17257127 GTGTAATGAT
17257137 TAAAATAATTATTTTTATAAAA
1 TAAAATAATTATTTTTA-AAAA
17257159 TAAAATATATTA-TTTTAAAAA
1 TAAAATA-ATTATTTTTAAAAA
17257180 T
1 T
17257181 GTTTTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 12 0.57
23 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TAAAATAATTATTTTTAAAAA
Found at i:17258246 original size:22 final size:22
Alignment explanation
Indices: 17258205--17258246 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
17258195 TGTATGACCC
***
17258205 TTGTAATTAAAATTTCATTATT
1 TTGTAATTAAAATAGAATTATT
17258227 TTGTAATTAAAATAGAATTA
1 TTGTAATTAAAATAGAATTA
17258247 ATAAATTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (22 bp):
TTGTAATTAAAATAGAATTATT
Found at i:17259069 original size:31 final size:31
Alignment explanation
Indices: 17259028--17259098 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
17259018 TTAATACTTG
*
17259028 AATTTCATTTATTTTTTAATTAAAATCATTT
1 AATTTTATTTATTTTTTAATTAAAATCATTT
*
17259059 AATTTTATTTATTTTTTAATTAAAATTATTT
1 AATTTTATTTATTTTTTAATTAAAATCATTT
17259090 AATTTTATT
1 AATTTTATT
17259099 CACAAAAAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (31 bp):
AATTTTATTTATTTTTTAATTAAAATCATTT
Found at i:17259087 original size:17 final size:17
Alignment explanation
Indices: 17259036--17259089 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
17259026 TGAATTTCAT
17259036 TTATTTTTTAATTAAAA
1 TTATTTTTTAATTAAAA
* ** *
17259053 TCA---TTTAATTTTAT
1 TTATTTTTTAATTAAAA
17259067 TTATTTTTTAATTAAAA
1 TTATTTTTTAATTAAAA
17259084 TTATTT
1 TTATTT
17259090 AATTTTATTC
Statistics
Matches: 26, Mismatches: 8, Indels: 6
0.65 0.20 0.15
Matches are distributed among these distances:
14 10 0.38
17 16 0.62
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
TTATTTTTTAATTAAAA
Found at i:17259175 original size:18 final size:18
Alignment explanation
Indices: 17259135--17259177 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
17259125 ATTACTTTTA
*
17259135 AATTTATTACTTGAATTT
1 AATTTATTACTTGAAATT
* * *
17259153 CATTTATTCCTTTAAATT
1 AATTTATTACTTGAAATT
17259171 AATTTAT
1 AATTTAT
17259178 CTTTTAATTA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (18 bp):
AATTTATTACTTGAAATT
Found at i:17260172 original size:10 final size:10
Alignment explanation
Indices: 17260138--17260247 Score: 58
Period size: 10 Copynumber: 11.5 Consensus size: 10
17260128 ATATTTTTCA
17260138 AAAAATTTATT
1 AAAAATTTA-T
17260149 AAAAATATT-T
1 AAAAAT-TTAT
17260159 --AAATTTAT
1 AAAAATTTAT
17260167 AAAAA-TTAT
1 AAAAATTTAT
*
17260176 AAAAA--TAC
1 AAAAATTTAT
17260184 AAAAATTTAT
1 AAAAATTTAT
* *
17260194 AAATA-CTAT
1 AAAAATTTAT
* *
17260203 AATGAA-TCATT
1 AA-AAATTTA-T
*
17260214 AAAAATATAT
1 AAAAATTTAT
*
17260224 AAAAATTCAT
1 AAAAATTTAT
17260234 AAAAA-TTAT
1 AAAAATTTAT
17260243 AAAAA
1 AAAAA
17260248 AATTAGAAAC
Statistics
Matches: 76, Mismatches: 14, Indels: 20
0.69 0.13 0.18
Matches are distributed among these distances:
7 2 0.03
8 12 0.16
9 22 0.29
10 28 0.37
11 10 0.13
12 2 0.03
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.34
Consensus pattern (10 bp):
AAAAATTTAT
Found at i:17260181 original size:19 final size:19
Alignment explanation
Indices: 17260138--17260247 Score: 68
Period size: 19 Copynumber: 5.8 Consensus size: 19
17260128 ATATTTTTCA
17260138 AAAAATTTATTAAAAA-TAT
1 AAAAATTTA-TAAAAATTAT
**
17260157 TTAAATTTATAAAAATTAT
1 AAAAATTTATAAAAATTAT
*
17260176 AAAAA--TACAAAAATT-T
1 AAAAATTTATAAAAATTAT
* * * *
17260192 ATAAATACTATAATGAATCATT
1 AAAAAT-TTATAA-AAATTA-T
*
17260214 AAAAATATATAAAAATTCAT
1 AAAAATTTATAAAAATT-AT
17260234 AAAAA-TTATAAAAA
1 AAAAATTTATAAAAA
17260248 AATTAGAAAC
Statistics
Matches: 69, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
16 5 0.07
17 9 0.13
18 6 0.09
19 25 0.36
20 12 0.17
21 6 0.09
22 6 0.09
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.34
Consensus pattern (19 bp):
AAAAATTTATAAAAATTAT
Found at i:17260248 original size:10 final size:9
Alignment explanation
Indices: 17260163--17260247 Score: 73
Period size: 10 Copynumber: 9.0 Consensus size: 9
17260153 ATATTTAAAT
17260163 TTATAAAAA
1 TTATAAAAA
17260172 TTATAAAAA
1 TTATAAAAA
*
17260181 -TACAAAAA
1 TTATAAAAA
*
17260189 TTTATAAATA
1 -TTATAAAAA
* *
17260199 CTATAATGAA
1 TTATAA-AAA
*
17260209 TCATTAAAAA
1 TTA-TAAAAA
17260219 TATATAAAAA
1 T-TATAAAAA
17260229 TTCATAAAAA
1 TT-ATAAAAA
17260239 TTATAAAAA
1 TTATAAAAA
17260248 AATTAGAAAC
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
8 7 0.12
9 22 0.37
10 27 0.45
11 4 0.07
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (9 bp):
TTATAAAAA
Found at i:17260248 original size:21 final size:20
Alignment explanation
Indices: 17260213--17260251 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
17260203 AATGAATCAT
*
17260213 TAAAAATATATAAAAATTCA
1 TAAAAATATAAAAAAATTCA
17260233 TAAAAATTATAAAAAAATT
1 TAAAAA-TATAAAAAAATT
17260252 AGAAACTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAAATATAAAAAAATTCA
Found at i:17261955 original size:295 final size:295
Alignment explanation
Indices: 17261425--17262016 Score: 1184
Period size: 295 Copynumber: 2.0 Consensus size: 295
17261415 AAGTTGCTAT
17261425 AAGAGCACAATAAAGCTCATAAAAGCCTTATTTTCCATCTTCCACATAACAAACTCCAGGTAGCC
1 AAGAGCACAATAAAGCTCATAAAAGCCTTATTTTCCATCTTCCACATAACAAACTCCAGGTAGCC
17261490 AATTACATTGCAAAAGCACAAATATCATATCATTATAAATACCAAATAAAGATAAAGCAATCCTC
66 AATTACATTGCAAAAGCACAAATATCATATCATTATAAATACCAAATAAAGATAAAGCAATCCTC
17261555 GATAGAGGTAAATCCCTAAGAGCATACAAAACAACCTTTTTGGGATCTCCATATCAAAGGTCTCT
131 GATAGAGGTAAATCCCTAAGAGCATACAAAACAACCTTTTTGGGATCTCCATATCAAAGGTCTCT
17261620 AGGATAAGTAGACGGAGTGTAACGCTATTACTAGACCTGATCGTCGAGTTCGAGTATGGAATGTC
196 AGGATAAGTAGACGGAGTGTAACGCTATTACTAGACCTGATCGTCGAGTTCGAGTATGGAATGTC
17261685 ATAATTAAATCGATTTGATCTAATGTTTTAATTAG
261 ATAATTAAATCGATTTGATCTAATGTTTTAATTAG
17261720 AAGAGCACAATAAAGCTCATAAAAGCCTTATTTTCCATCTTCCACATAACAAACTCCAGGTAGCC
1 AAGAGCACAATAAAGCTCATAAAAGCCTTATTTTCCATCTTCCACATAACAAACTCCAGGTAGCC
17261785 AATTACATTGCAAAAGCACAAATATCATATCATTATAAATACCAAATAAAGATAAAGCAATCCTC
66 AATTACATTGCAAAAGCACAAATATCATATCATTATAAATACCAAATAAAGATAAAGCAATCCTC
17261850 GATAGAGGTAAATCCCTAAGAGCATACAAAACAACCTTTTTGGGATCTCCATATCAAAGGTCTCT
131 GATAGAGGTAAATCCCTAAGAGCATACAAAACAACCTTTTTGGGATCTCCATATCAAAGGTCTCT
17261915 AGGATAAGTAGACGGAGTGTAACGCTATTACTAGACCTGATCGTCGAGTTCGAGTATGGAATGTC
196 AGGATAAGTAGACGGAGTGTAACGCTATTACTAGACCTGATCGTCGAGTTCGAGTATGGAATGTC
17261980 ATAATTAAATCGATTTGATCTAATGTTTTAATTAG
261 ATAATTAAATCGATTTGATCTAATGTTTTAATTAG
17262015 AA
1 AA
17262017 AAATTCGCCA
Statistics
Matches: 297, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
295 297 1.00
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (295 bp):
AAGAGCACAATAAAGCTCATAAAAGCCTTATTTTCCATCTTCCACATAACAAACTCCAGGTAGCC
AATTACATTGCAAAAGCACAAATATCATATCATTATAAATACCAAATAAAGATAAAGCAATCCTC
GATAGAGGTAAATCCCTAAGAGCATACAAAACAACCTTTTTGGGATCTCCATATCAAAGGTCTCT
AGGATAAGTAGACGGAGTGTAACGCTATTACTAGACCTGATCGTCGAGTTCGAGTATGGAATGTC
ATAATTAAATCGATTTGATCTAATGTTTTAATTAG
Found at i:17264301 original size:49 final size:49
Alignment explanation
Indices: 17264214--17264327 Score: 158
Period size: 49 Copynumber: 2.3 Consensus size: 49
17264204 ACCAATATTG
* * * *
17264214 TGGATAAGTCACCAGATAATGCAATCAAGCTGCTAGATACAGGTAATTA
1 TGGACAAGCCACCAAATAATGCAATCAAGCTGCTAGATACACGTAATTA
*
17264263 TGGACAAGCCACCAAATAATGCAATCAAGCTG-TCAGATATACGTAATTA
1 TGGACAAGCCACCAAATAATGCAATCAAGCTGCT-AGATACACGTAATTA
*
17264312 TAGACAAGCCACCAAA
1 TGGACAAGCCACCAAA
17264328 ATTTGTAGAT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
48 1 0.02
49 57 0.98
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (49 bp):
TGGACAAGCCACCAAATAATGCAATCAAGCTGCTAGATACACGTAATTA
Found at i:17271454 original size:56 final size:56
Alignment explanation
Indices: 17271368--17271480 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
17271358 CCAATGACTT
17271368 AGGCCTCTTTGAGCAACTTATGTACATGCCATTTTACTCAAAATAAAAGTACCTAA
1 AGGCCTCTTTGAGCAACTTATGTACATGCCATTTTACTCAAAATAAAAGTACCTAA
17271424 AGGCCTCTTTGAGCAACTTATGTACATGCCATTTTACTCAAAATAAAAGTACCTAA
1 AGGCCTCTTTGAGCAACTTATGTACATGCCATTTTACTCAAAATAAAAGTACCTAA
17271480 A
1 A
17271481 CTTGAGCCTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.30
Consensus pattern (56 bp):
AGGCCTCTTTGAGCAACTTATGTACATGCCATTTTACTCAAAATAAAAGTACCTAA
Found at i:17271896 original size:22 final size:23
Alignment explanation
Indices: 17271871--17271927 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
17271861 AATGCACGAA
*
17271871 TAAACGGAGAGCACA-AACGTGC
1 TAAACGGAGAGCACACAAAGTGC
*
17271893 TAAACGGAGACCACACAAAGTGC
1 TAAACGGAGAGCACACAAAGTGC
17271916 TAAACGGAGAGC
1 TAAACGGAGAGC
17271928 GCGCTAAGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
22 14 0.45
23 17 0.55
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (23 bp):
TAAACGGAGAGCACACAAAGTGC
Found at i:17279123 original size:82 final size:82
Alignment explanation
Indices: 17278986--17279224 Score: 433
Period size: 82 Copynumber: 2.9 Consensus size: 82
17278976 TTTTGTGAAA
*
17278986 AGCGACCTAGTGCAGACGAGGAATTAGTTCGAGAGTACTATGCAAATTTGACCTCGAGTGATCTA
1 AGCGACCTAGTGCAGACGAGGAATTAGTTCGAGAGTTCTATGCAAATTTGACCTCGAGTGATCTA
17279051 ACAGAAGTTCCCATCTG
66 ACAGAAGTTCCCATCTG
*
17279068 AGCGACCCAGTGCAGACGAGGAATTAGTTCGAGAGTTCTATGCAAATTTGACCTCGAGTGATCTA
1 AGCGACCTAGTGCAGACGAGGAATTAGTTCGAGAGTTCTATGCAAATTTGACCTCGAGTGATCTA
17279133 ACAGAAGTTCCCATCTG
66 ACAGAAGTTCCCATCTG
** *
17279150 AGCGACCTAGTGCAGACGAGGAATTAGTTTAAGACTTCTATGCAAATTTGACCTCGAGTGATCTA
1 AGCGACCTAGTGCAGACGAGGAATTAGTTCGAGAGTTCTATGCAAATTTGACCTCGAGTGATCTA
17279215 ACAGAAGTTC
66 ACAGAAGTTC
17279225 TCGTCTAAGG
Statistics
Matches: 151, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 151 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (82 bp):
AGCGACCTAGTGCAGACGAGGAATTAGTTCGAGAGTTCTATGCAAATTTGACCTCGAGTGATCTA
ACAGAAGTTCCCATCTG
Found at i:17283558 original size:20 final size:20
Alignment explanation
Indices: 17283522--17283566 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
17283512 TCATTAAGCT
*
17283522 TTAATTAATCTCTTTTAATC
1 TTAATTAAGCTCTTTTAATC
*
17283542 TTAATTAAGC-CTATTTACTC
1 TTAATTAAGCTCT-TTTAATC
17283562 TTAAT
1 TTAAT
17283567 ACAAATCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.31, C:0.16, G:0.02, T:0.51
Consensus pattern (20 bp):
TTAATTAAGCTCTTTTAATC
Found at i:17291453 original size:25 final size:27
Alignment explanation
Indices: 17291413--17291468 Score: 73
Period size: 25 Copynumber: 2.1 Consensus size: 27
17291403 TAAATAGGAA
*
17291413 AAAGTAGTTACAAGAATAT-GAAAGGTT
1 AAAGTAGTTACAAGAAGATAG-AAGGTT
17291440 AAAG-AGTTA-AAGAAGATAGAAGGTT
1 AAAGTAGTTACAAGAAGATAGAAGGTT
17291465 AAAG
1 AAAG
17291469 GTCAAGGGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 17 0.63
26 6 0.22
27 4 0.15
ACGTcount: A:0.52, C:0.02, G:0.25, T:0.21
Consensus pattern (27 bp):
AAAGTAGTTACAAGAAGATAGAAGGTT
Found at i:17296795 original size:17 final size:17
Alignment explanation
Indices: 17296775--17296812 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
17296765 AAAGTAGTTA
* *
17296775 AAAGAATATGAAAGGTT
1 AAAGAAGATGAAAGATT
17296792 AAAGAAGATGAAAGATT
1 AAAGAAGATGAAAGATT
17296809 AAAG
1 AAAG
17296813 GTCAAGGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18
Consensus pattern (17 bp):
AAAGAAGATGAAAGATT
Found at i:17297046 original size:16 final size:16
Alignment explanation
Indices: 17297025--17297060 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
17297015 ATGGAATAGA
*
17297025 GTAATATAATAGAACT
1 GTAATAGAATAGAACT
17297041 GTAATAGAATAGAACT
1 GTAATAGAATAGAACT
17297057 GTAA
1 GTAA
17297061 CAAGTAATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.06, G:0.17, T:0.28
Consensus pattern (16 bp):
GTAATAGAATAGAACT
Found at i:17299509 original size:20 final size:20
Alignment explanation
Indices: 17299484--17299530 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
17299474 CTTGTAGAGG
* * *
17299484 TTTGCACTTTTGTGTCCCTA
1 TTTGCACTCTAGTGCCCCTA
17299504 TTTGCACTCTAGTGCCCCTA
1 TTTGCACTCTAGTGCCCCTA
*
17299524 ATTGCAC
1 TTTGCAC
17299531 AATCATTCCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.30, G:0.15, T:0.40
Consensus pattern (20 bp):
TTTGCACTCTAGTGCCCCTA
Found at i:17300898 original size:37 final size:38
Alignment explanation
Indices: 17300824--17300905 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 38
17300814 ACAAGTTGTT
17300824 TTAAAATTATTAAAATAATTTTTTGAAATATAAAATTA
1 TTAAAATTATTAAAATAATTTTTTGAAATATAAAATTA
* * *
17300862 TTAAAATTATT-ATATTATTATTTT-CAATATAAAATTA
1 TTAAAATTATTAAAATAATT-TTTTGAAATATAAAATTA
17300899 TTAAAAT
1 TTAAAAT
17300906 AGAACGTTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
37 25 0.62
38 15 0.38
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (38 bp):
TTAAAATTATTAAAATAATTTTTTGAAATATAAAATTA
Found at i:17301381 original size:15 final size:15
Alignment explanation
Indices: 17301333--17301381 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
17301323 TGGGTAAGGG
17301333 TTTTGA-TTTGGAGA
1 TTTTGATTTTGGAGA
* *
17301347 TTTTTG-TTTAGG-GT
1 -TTTTGATTTTGGAGA
17301361 TTTTGATTTTGGAGA
1 TTTTGATTTTGGAGA
17301376 TTTTGA
1 TTTTGA
17301382 GGATTGCTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
13 5 0.19
14 6 0.22
15 16 0.59
ACGTcount: A:0.16, C:0.00, G:0.27, T:0.57
Consensus pattern (15 bp):
TTTTGATTTTGGAGA
Found at i:17302007 original size:24 final size:23
Alignment explanation
Indices: 17301980--17302038 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 23
17301970 AAACTTTAAA
*
17301980 AATAGATTTTAATATAATAATTTT
1 AATA-ATTTTAATAAAATAATTTT
17302004 AATAATTTTATATAAAATAATTTT
1 AATAATTTTA-ATAAAATAATTTT
17302028 AATAATTTTAA
1 AATAATTTTAA
17302039 AATCATTTGC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
23 7 0.21
24 26 0.79
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
AATAATTTTAATAAAATAATTTT
Found at i:17302008 original size:9 final size:9
Alignment explanation
Indices: 17301994--17302038 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
17301984 GATTTTAATA
17301994 TAATAATTT
1 TAATAATTT
17302003 TAATAATTT
1 TAATAATTT
17302012 TATATAA---
1 TA-ATAATTT
17302019 -AATAATTT
1 TAATAATTT
17302027 TAATAATTT
1 TAATAATTT
17302036 TAA
1 TAA
17302039 AATCATTTGC
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
5 4 0.13
6 1 0.03
9 22 0.71
10 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
TAATAATTT
Found at i:17302826 original size:20 final size:20
Alignment explanation
Indices: 17302801--17302839 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
17302791 GTGGTGATAC
17302801 GGTGGTGCTAG-GGTGGTGGG
1 GGTGGTGC-AGTGGTGGTGGG
*
17302821 GGTGGTTCAGTGGTGGTGG
1 GGTGGTGCAGTGGTGGTGG
17302840 TATGGTGGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.05, C:0.05, G:0.62, T:0.28
Consensus pattern (20 bp):
GGTGGTGCAGTGGTGGTGGG
Found at i:17303686 original size:23 final size:23
Alignment explanation
Indices: 17303669--17303861 Score: 314
Period size: 23 Copynumber: 8.4 Consensus size: 23
17303659 TAATCATAGA
*
17303669 AATATTTAAGCATAAATCATATT
1 AATATTTAAGCATAAATCACATT
*
17303692 AATATTTAAGCACAAATCACATT
1 AATATTTAAGCATAAATCACATT
17303715 AATATTTAAGCATAAATCACATT
1 AATATTTAAGCATAAATCACATT
*
17303738 AATATTTAAGCACAAATCACATT
1 AATATTTAAGCATAAATCACATT
17303761 AATATTTAAGCATAAATCACATT
1 AATATTTAAGCATAAATCACATT
17303784 AATATTTAAGCATAAATCACATT
1 AATATTTAAGCATAAATCACATT
* * *
17303807 AATATTTAGGTATAAACCACATT
1 AATATTTAAGCATAAATCACATT
* *
17303830 AATATTTAAGTATACATCACATT
1 AATATTTAAGCATAAATCACATT
17303853 AATATTTAA
1 AATATTTAA
17303862 TACATTTAAT
Statistics
Matches: 159, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 159 1.00
ACGTcount: A:0.47, C:0.13, G:0.05, T:0.35
Consensus pattern (23 bp):
AATATTTAAGCATAAATCACATT
Found at i:17312846 original size:29 final size:31
Alignment explanation
Indices: 17312789--17312846 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 31
17312779 TACCATTTTC
*
17312789 TTTAGTTAATTTTCTTTTCTTAGATTTAGGT
1 TTTAGTTAATTTTCTTTTCTTAGACTTAGGT
* *
17312820 TTTAGTTTA-TTTC-TTTCTTAGGCTTAG
1 TTTAGTTAATTTTCTTTTCTTAGACTTAG
17312847 TTTATTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 12 0.50
30 4 0.17
31 8 0.33
ACGTcount: A:0.17, C:0.09, G:0.14, T:0.60
Consensus pattern (31 bp):
TTTAGTTAATTTTCTTTTCTTAGACTTAGGT
Found at i:17313434 original size:3 final size:3
Alignment explanation
Indices: 17313421--17313474 Score: 99
Period size: 3 Copynumber: 17.7 Consensus size: 3
17313411 TATTTATTTC
17313421 TAT TCAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
17313467 TAT TAT TA
1 TAT TAT TA
17313475 AAGCTAAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 47 0.94
4 3 0.06
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:17320098 original size:82 final size:82
Alignment explanation
Indices: 17319995--17320233 Score: 424
Period size: 82 Copynumber: 2.9 Consensus size: 82
17319985 CCTTAGACGA
* ** *
17319995 GAACTTCTGTTAGATCACTCGAGGTCAAATTTGCATAGAAGTCTTAAACTAATTCCTCGTCTACA
1 GAACTTCTGTTAGATCACTCGAGGTCAAATTTGCATAGAACTCTCGAACTAATTCCTCGTCTGCA
17320060 CTAGGTCGCTCAGATGG
66 CTAGGTCGCTCAGATGG
17320077 GAACTTCTGTTAGATCACTCGAGGTCAAATTTGCATAGAACTCTCGAACTAATTCCTCGTCTGCA
1 GAACTTCTGTTAGATCACTCGAGGTCAAATTTGCATAGAACTCTCGAACTAATTCCTCGTCTGCA
*
17320142 CTGGGTCGCTCAGATGG
66 CTAGGTCGCTCAGATGG
*
17320159 GAACTTCTGTTAGATCACTCGAGGTCAAATTTGCATAGTACTCTCGAACTAATTCCTCGTCTGCA
1 GAACTTCTGTTAGATCACTCGAGGTCAAATTTGCATAGAACTCTCGAACTAATTCCTCGTCTGCA
17320224 CTAGGTCGCT
66 CTAGGTCGCT
17320234 TTTCACAAAA
Statistics
Matches: 150, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 150 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (82 bp):
GAACTTCTGTTAGATCACTCGAGGTCAAATTTGCATAGAACTCTCGAACTAATTCCTCGTCTGCA
CTAGGTCGCTCAGATGG
Found at i:17327341 original size:22 final size:23
Alignment explanation
Indices: 17327291--17327347 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
17327281 ACCTTAGCGC
*
17327291 GCTCTCCGTTTAGCACTTTGTGT
1 GCTCTCCGTTTAGCACGTTGTGT
*
17327314 GGTCTCCGTTTAGCACGTT-TGT
1 GCTCTCCGTTTAGCACGTTGTGT
17327336 GCTCTCCGTTTA
1 GCTCTCCGTTTA
17327348 TTCGTGCATT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
22 14 0.45
23 17 0.55
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (23 bp):
GCTCTCCGTTTAGCACGTTGTGT
Found at i:17334906 original size:49 final size:49
Alignment explanation
Indices: 17334827--17334940 Score: 158
Period size: 49 Copynumber: 2.3 Consensus size: 49
17334817 ATCTACAAAT
* *
17334827 TTTGGTGGCTTGTCTATAATTACGTATATCT-GACAGCTTGATTGCATTA
1 TTTGGTGGCTTGTCCATAATTACCTATATCTAG-CAGCTTGATTGCATTA
*
17334876 TTTGGTGGCTTGTCCATAATTACCTGTATCTAGCAGCTTGATTGCATTA
1 TTTGGTGGCTTGTCCATAATTACCTATATCTAGCAGCTTGATTGCATTA
* * *
17334925 TCTGGTGACTTATCCA
1 TTTGGTGGCTTGTCCA
17334941 CAATATTGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
49 57 0.98
50 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (49 bp):
TTTGGTGGCTTGTCCATAATTACCTATATCTAGCAGCTTGATTGCATTA
Found at i:17338179 original size:12 final size:12
Alignment explanation
Indices: 17338152--17338191 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
17338142 CAAGCGATTG
17338152 AATTAATTTTTT
1 AATTAATTTTTT
17338164 --TTAATTTTTT
1 AATTAATTTTTT
*
17338174 AATTAATTATTT
1 AATTAATTTTTT
17338186 AATTAA
1 AATTAA
17338192 ATCGATCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
10 10 0.40
12 15 0.60
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
AATTAATTTTTT
Found at i:17338687 original size:16 final size:17
Alignment explanation
Indices: 17338666--17338698 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
17338656 ATTCATTATA
17338666 GTATTTATA-AATTTTT
1 GTATTTATATAATTTTT
*
17338682 GTATTTTTATAATTTTT
1 GTATTTATATAATTTTT
17338699 ATAAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
GTATTTATATAATTTTT
Found at i:17338697 original size:8 final size:9
Alignment explanation
Indices: 17338618--17338702 Score: 73
Period size: 10 Copynumber: 9.0 Consensus size: 9
17338608 AGTTTCTAAT
17338618 TTTTTATAA
1 TTTTTATAA
17338627 TTTTTATGAA
1 TTTTTAT-AA
17338637 TTTTTATATA
1 TTTTTATA-A
*
17338647 TTTTTAATGA
1 TTTTT-ATAA
* *
17338657 TTCATTATAG
1 TT-TTTATAA
*
17338667 TATTTATAAA
1 TTTTTAT-AA
*
17338677 TTTTTGT-A
1 TTTTTATAA
17338685 TTTTTATAA
1 TTTTTATAA
17338694 TTTTTATAA
1 TTTTTATAA
17338703 ATTTAAATAT
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
8 7 0.12
9 22 0.37
10 27 0.45
11 4 0.07
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:17338705 original size:10 final size:10
Alignment explanation
Indices: 17338618--17338727 Score: 58
Period size: 10 Copynumber: 11.5 Consensus size: 10
17338608 AGTTTCTAAT
17338618 TTTTTAT-AA
1 TTTTTATAAA
*
17338627 TTTTTATGAA
1 TTTTTATAAA
*
17338637 TTTTTATATA
1 TTTTTATAAA
*
17338647 TTTTTA-ATGA
1 TTTTTATA-AA
* *
17338657 TTCATTAT-AG
1 TT-TTTATAAA
*
17338667 TATTTATAAA
1 TTTTTATAAA
*
17338677 TTTTTGT--A
1 TTTTTATAAA
17338685 TTTTTAT-AA
1 TTTTTATAAA
17338694 TTTTTATAAA
1 TTTTTATAAA
17338704 --TTTA-AATA
1 TTTTTATAA-A
17338712 TTTTTAATAAA
1 TTTTT-ATAAA
17338723 TTTTT
1 TTTTT
17338728 TGAAAAATAT
Statistics
Matches: 77, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
7 2 0.03
8 12 0.16
9 20 0.26
10 31 0.40
11 10 0.13
12 2 0.03
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.62
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:17338713 original size:27 final size:28
Alignment explanation
Indices: 17338626--17338727 Score: 82
Period size: 27 Copynumber: 3.6 Consensus size: 28
17338616 ATTTTTTATA
* *
17338626 ATTTTTATGAATTTTTATATATTTTTAAT
1 ATTTTTATAAATTTTTATA-AATTTTAAT
* * * **
17338655 GATTCATTAT-AGTATTTATAAATTTTTGT
1 -ATT-TTTATAAATTTTTATAAATTTTAAT
*
17338684 ATTTTTAT-AATTTTTATAAATTTAAAT
1 ATTTTTATAAATTTTTATAAATTTTAAT
17338711 ATTTTTAATAAATTTTT
1 ATTTTT-ATAAATTTTT
17338728 TGAAAAATAT
Statistics
Matches: 57, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
27 24 0.42
28 5 0.09
29 13 0.23
30 11 0.19
31 4 0.07
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (28 bp):
ATTTTTATAAATTTTTATAAATTTTAAT
Found at i:17339713 original size:18 final size:18
Alignment explanation
Indices: 17339681--17339732 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
17339671 AAAATTAAAT
*
17339681 AATTAAA-AGATAAATTA
1 AATTAAAGAAATAAATTA
* * *
17339698 ATTTAAAGGAATAAATGA
1 AATTAAAGAAATAAATTA
*
17339716 AATTCAAGAAATAAATT
1 AATTAAAGAAATAAATT
17339733 TAAAAGTAAT
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
17 6 0.23
18 20 0.77
ACGTcount: A:0.60, C:0.02, G:0.10, T:0.29
Consensus pattern (18 bp):
AATTAAAGAAATAAATTA
Found at i:17339799 original size:17 final size:17
Alignment explanation
Indices: 17339777--17339830 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
17339767 GAATAAAATT
17339777 AAATAATTTTAATTAAA
1 AAATAATTTTAATTAAA
* **
17339794 AAATAAATAAAATT---
1 AAATAATTTTAATTAAA
*
17339808 AAATGATTTTAATTAAA
1 AAATAATTTTAATTAAA
17339825 AAATAA
1 AAATAA
17339831 ATGAAATTCA
Statistics
Matches: 26, Mismatches: 8, Indels: 6
0.65 0.20 0.15
Matches are distributed among these distances:
14 10 0.38
17 16 0.62
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
AAATAATTTTAATTAAA
Found at i:17339804 original size:31 final size:31
Alignment explanation
Indices: 17339768--17339838 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
17339758 TCTTTTTTTG
17339768 AATAAAATTAAATAATTTTAATTAAAAAATA
1 AATAAAATTAAATAATTTTAATTAAAAAATA
*
17339799 AATAAAATTAAATGATTTTAATTAAAAAATA
1 AATAAAATTAAATAATTTTAATTAAAAAATA
*
17339830 AATGAAATT
1 AATAAAATT
17339839 CAAGTATTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (31 bp):
AATAAAATTAAATAATTTTAATTAAAAAATA
Found at i:17345450 original size:56 final size:56
Alignment explanation
Indices: 17345366--17345520 Score: 199
Period size: 56 Copynumber: 2.8 Consensus size: 56
17345356 CTTTAACCAC
* * *
17345366 ATGATGCCATAGTC-TC-AGACTAGGTCTTACACAATGTGGTCTTCATTT-CCTCAT
1 ATGATGCCATAGCCATCTGGACTAGGTCTTACACAATATGGTCTTCATTTCCCT-AT
* * *
17345420 ATGATGCCATAGCTATTTGGACTAGGTCTTACACAATATGATCTTCATTTCCCTAT
1 ATGATGCCATAGCCATCTGGACTAGGTCTTACACAATATGGTCTTCATTTCCCTAT
* * *
17345476 ATGATGTCATAGCCATCTGAACTAGGTCTTAGACAATATGGTCTT
1 ATGATGCCATAGCCATCTGGACTAGGTCTTACACAATATGGTCTT
17345521 TGCTTATTAT
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 12 0.14
55 1 0.01
56 70 0.81
57 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.35
Consensus pattern (56 bp):
ATGATGCCATAGCCATCTGGACTAGGTCTTACACAATATGGTCTTCATTTCCCTAT
Found at i:17359025 original size:17 final size:17
Alignment explanation
Indices: 17358998--17359062 Score: 69
Period size: 17 Copynumber: 3.8 Consensus size: 17
17358988 TATATATGGA
* *
17358998 AATGCAATGACAATGTAG
1 AATGCAGTGACAAT-AAG
17359016 -ATGCAGTGACAATAAG
1 AATGCAGTGACAATAAG
* *
17359032 AATGCAGTGACGATAAA
1 AATGCAGTGACAATAAG
*
17359049 AATGCAGGGACAAT
1 AATGCAGTGACAAT
17359063 TATACTACAG
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
16 2 0.05
17 38 0.95
ACGTcount: A:0.45, C:0.12, G:0.25, T:0.18
Consensus pattern (17 bp):
AATGCAGTGACAATAAG
Found at i:17376996 original size:20 final size:20
Alignment explanation
Indices: 17376968--17377011 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
17376958 TATACTTTAA
*
17376968 TTAAATTTAATTAATCTAGT
1 TTAAATTTAATTAATCAAGT
* *
17376988 TTAACTTTACTTAATCAAGT
1 TTAAATTTAATTAATCAAGT
17377008 TTAA
1 TTAA
17377012 TTGTGTTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.48
Consensus pattern (20 bp):
TTAAATTTAATTAATCAAGT
Found at i:17394143 original size:25 final size:25
Alignment explanation
Indices: 17394090--17394188 Score: 110
Period size: 25 Copynumber: 3.9 Consensus size: 25
17394080 ATAGAGTTTA
* *
17394090 GCTCTTACGAGCCCAGACAGAGTATT
1 GCTCTTACGAG-CCAGACAGAATAAT
*
17394116 GCTCTTACGAGCTAGACAGAATAAT
1 GCTCTTACGAGCCAGACAGAATAAT
* *
17394141 GCTCTTACGAGTCAGACTGAAT-AT
1 GCTCTTACGAGCCAGACAGAATAAT
* *
17394165 CGCTCTTATGAGCCAGATAGAATA
1 -GCTCTTACGAGCCAGACAGAATA
17394189 TCTTCATCGT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
24 2 0.03
25 48 0.79
26 11 0.18
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (25 bp):
GCTCTTACGAGCCAGACAGAATAAT
Found at i:17394171 original size:50 final size:51
Alignment explanation
Indices: 17394090--17394188 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 51
17394080 ATAGAGTTTA
* * *
17394090 GCTCTTACGAGCCCAGACAGAGTATTGCTCTTACGAGCTAGACAGAATAAT
1 GCTCTTACGAGCCCAGACAGAATATCGCTCTTACGAGCCAGACAGAATAAT
* * * *
17394141 GCTCTTACGAG-TCAGACTGAATATCGCTCTTATGAGCCAGATAGAATA
1 GCTCTTACGAGCCCAGACAGAATATCGCTCTTACGAGCCAGACAGAATA
17394189 TCTTCATCGT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
50 30 0.73
51 11 0.27
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (51 bp):
GCTCTTACGAGCCCAGACAGAATATCGCTCTTACGAGCCAGACAGAATAAT
Found at i:17394189 original size:25 final size:25
Alignment explanation
Indices: 17394076--17394190 Score: 99
Period size: 25 Copynumber: 4.6 Consensus size: 25
17394066 TCAAACAATC
* * *
17394076 CCAGATAGAGTTTAGCTCTTACGAG
1 CCAGATAGAATATCGCTCTTACGAG
* * *
17394101 CCCAGACAGAGTATTGCTCTTACGAG
1 -CCAGATAGAATATCGCTCTTACGAG
* *
17394127 CTAGACAGAATAAT-GCTCTTACGAG
1 CCAGATAGAAT-ATCGCTCTTACGAG
* *
17394152 TCAGACT-GAATATCGCTCTTATGAG
1 CCAGA-TAGAATATCGCTCTTACGAG
17394177 CCAGATAGAATATC
1 CCAGATAGAATATC
17394191 TTCATCGTCT
Statistics
Matches: 75, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
24 3 0.04
25 48 0.64
26 24 0.32
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (25 bp):
CCAGATAGAATATCGCTCTTACGAG
Found at i:17410127 original size:102 final size:99
Alignment explanation
Indices: 17409919--17410129 Score: 226
Period size: 102 Copynumber: 2.1 Consensus size: 99
17409909 ACAGAACGAC
* * *
17409919 AAATCCTATACCCCTAAAGTTGTAGAGGGGCAGATTAAAACGAGTAACAAATCTCAATCTCTCTG
1 AAATCCTATACCCCTAAAGTTGTAGAGGGGCAGATTAAAACCAGTAACAAATCTCAATCTCCCTA
* *
17409984 AAGTTGCAGTAAAATGGAGCAAAGTTACAACCCT
66 AAGATGCAGTAAAATGGAGCAAAGTTACAACACT
* * ** * **
17410018 AAATCCTATACGCCTAGAGTTGTAGAGGGGTGGATTAAAACTAACAGTATCGGATCTCAATCTCC
1 AAATCCTATACCCCTAAAGTTGTAGAGGGGCAGATTAAAAC---CAGTAACAAATCTCAATCTCC
* * **
17410083 CTAAAGATGTAGTGAAATGGAGTTAAGTTACGAA-ACT
63 CTAAAGATGCAGTAAAATGGAGCAAAGTTAC-AACACT
*
17410120 AGATCCTATA
1 AAATCCTATA
17410130 TTCTTGAAGT
Statistics
Matches: 91, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
99 37 0.41
102 52 0.57
103 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (99 bp):
AAATCCTATACCCCTAAAGTTGTAGAGGGGCAGATTAAAACCAGTAACAAATCTCAATCTCCCTA
AAGATGCAGTAAAATGGAGCAAAGTTACAACACT
Found at i:17410802 original size:4 final size:4
Alignment explanation
Indices: 17410793--17410821 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
17410783 TTAAAAGACC
17410793 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
17410822 TATAAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:17410855 original size:15 final size:14
Alignment explanation
Indices: 17410823--17410860 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
17410813 TATTTATTTT
*
17410823 ATAAATAAAAATAC
1 ATAAATAAAAACAC
17410837 ATAAATAAAAACAC
1 ATAAATAAAAACAC
17410851 A-ATAATAAAA
1 ATA-AATAAAA
17410861 TAATCCAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 1 0.05
14 21 0.95
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (14 bp):
ATAAATAAAAACAC
Found at i:17417276 original size:41 final size:41
Alignment explanation
Indices: 17417221--17417539 Score: 333
Period size: 41 Copynumber: 7.8 Consensus size: 41
17417211 TCCCCATAAA
*
17417221 CGCCGCTAATGCTCTGACCATTAGCGGCATTTATGAGAAAG
1 CGCCGCTAATGCTCTGACCATTAGCGGCGTTTATGAGAAAG
** *
17417262 CATCGCTAATGCTCT-AACATTTAGCGGCGTTTATGAGAAAG
1 CGCCGCTAATGCTCTGACCA-TTAGCGGCGTTTATGAGAAAG
* * **
17417303 CGCCACTAATGCTCTGA-CATTTAGCGGCATTTATCTGAAAG
1 CGCCGCTAATGCTCTGACCA-TTAGCGGCGTTTATGAGAAAG
* * ***
17417344 CGCCGTTAATGCTCTGA-CATTTAGCAGCGTTTATCTCAAAG
1 CGCCGCTAATGCTCTGACCA-TTAGCGGCGTTTATGAGAAAG
* *
17417385 CGCCGCGAATGCTCTGACCTTTAGCGGCGTTTAT-ATGAAAG
1 CGCCGCTAATGCTCTGACCATTAGCGGCGTTTATGA-GAAAG
* *
17417426 CGCCGCTAATGCTCTGACCTTTAGCAGCGTTTAT-ATGAAAG
1 CGCCGCTAATGCTCTGACCATTAGCGGCGTTTATGA-GAAAG
* * ** *
17417467 CGCCGCTAAAGCTCTGACCTTTAGCTACGTTTGTGAGAAAG
1 CGCCGCTAATGCTCTGACCATTAGCGGCGTTTATGAGAAAG
* * *
17417508 CGTCGCTAATGCTTTGACCTTTAGCGGCGTTT
1 CGCCGCTAATGCTCTGACCATTAGCGGCGTTT
17417540 CCTCCAAAAT
Statistics
Matches: 241, Mismatches: 32, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
40 3 0.01
41 235 0.98
42 3 0.01
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (41 bp):
CGCCGCTAATGCTCTGACCATTAGCGGCGTTTATGAGAAAG
Found at i:17417385 original size:123 final size:123
Alignment explanation
Indices: 17417221--17417539 Score: 410
Period size: 123 Copynumber: 2.6 Consensus size: 123
17417211 TCCCCATAAA
* * * * *
17417221 CGCCGCTAATGCTCTGACCA-TTAGCGGCATTTATGAGAAAGCATCGCTAATGCTCTAACATTTA
1 CGCCGCTAATGCTCTGA-CATTTAGCAGCGTTTATGAGAAAGCGTCGCTAATGCTCTGACCTTTA
* *
17417285 GCGGCGTTTATGA-GAAAGCGCCACTAATGCTCTGACATTTAGCGGCATTTATCTGAAAG
65 GCGGCGTTTAT-ATGAAAGCGCCACTAATGCTCTGACATTTAGCAGCATTTATATGAAAG
* *** * *
17417344 CGCCGTTAATGCTCTGACATTTAGCAGCGTTTATCTCAAAGCGCCGCGAATGCTCTGACCTTTAG
1 CGCCGCTAATGCTCTGACATTTAGCAGCGTTTATGAGAAAGCGTCGCTAATGCTCTGACCTTTAG
* * *
17417409 CGGCGTTTATATGAAAGCGCCGCTAATGCTCTGACCTTTAGCAGCGTTTATATGAAAG
66 CGGCGTTTATATGAAAGCGCCACTAATGCTCTGACATTTAGCAGCATTTATATGAAAG
* * * *
17417467 CGCCGCTAAAGCTCTGACCTTTAGCTA-CGTTTGTGAGAAAGCGTCGCTAATGCTTTGACCTTTA
1 CGCCGCTAATGCTCTGACATTTAGC-AGCGTTTATGAGAAAGCGTCGCTAATGCTCTGACCTTTA
17417531 GCGGCGTTT
65 GCGGCGTTT
17417540 CCTCCAAAAT
Statistics
Matches: 167, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
122 3 0.02
123 163 0.98
124 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (123 bp):
CGCCGCTAATGCTCTGACATTTAGCAGCGTTTATGAGAAAGCGTCGCTAATGCTCTGACCTTTAG
CGGCGTTTATATGAAAGCGCCACTAATGCTCTGACATTTAGCAGCATTTATATGAAAG
Found at i:17417673 original size:40 final size:40
Alignment explanation
Indices: 17417636--17417742 Score: 162
Period size: 40 Copynumber: 2.7 Consensus size: 40
17417626 TATAAACGCT
17417636 GCTATTGCTTTACCTTTTGCGACGTTTATGGAAAAACGTC
1 GCTATTGCTTTACCTTTTGCGACGTTTATGGAAAAACGTC
* *
17417676 GCTATTGCTTTACCTTTTGC-AGCTTTTATGGATAAACGTC
1 GCTATTGCTTTACCTTTTGCGA-CGTTTATGGAAAAACGTC
* *
17417716 ACTATTGCTTTACCTTTTGCGGCGTTT
1 GCTATTGCTTTACCTTTTGCGACGTTT
17417743 TCTGACCAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
39 1 0.02
40 59 0.98
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.42
Consensus pattern (40 bp):
GCTATTGCTTTACCTTTTGCGACGTTTATGGAAAAACGTC
Found at i:17423112 original size:43 final size:43
Alignment explanation
Indices: 17423047--17423394 Score: 428
Period size: 43 Copynumber: 8.3 Consensus size: 43
17423037 ATCTGTTAAT
* *
17423047 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAATACCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTC
* *
17423090 TTTAGCGGCGTTT-TGTGTAAAAGCGCCGCTAAAGACCATGTTA
1 TTTAGCGGCGTTTGTG-GGAAAAGCGCCGCTAAAGACCATGTTC
* * *
17423133 TTTAGTGGCGTTTGTGCGAAAGGCGCCGCTAAAGACCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTC
* *
17423176 TTTAGCAGCGTTTGTGGGAGAAGCGCCGCTAAAGACCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTC
* *
17423219 TTTAGCGGCGTTTGTGGGAAAAGCACCACTAAAGACCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTC
* * *
17423262 TTTAGCAGCGTTTGTGGGAGAAGCGCCCCTAAAGACCATAG-TC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCAT-GTTC
* * *
17423305 TTTAACGGCGTTTGTGGGAAAA--G-TG-T--CG-CCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTC
* *
17423341 TTTAGCAGCGTTTGTGGGAAAAGCGTCGCTAAAGACCATGTT-
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTC
17423383 TTATAGCGGCGT
1 TT-TAGCGGCGT
17423395 CATCTTTAGC
Statistics
Matches: 261, Mismatches: 32, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
35 1 0.00
36 26 0.10
37 1 0.00
38 1 0.00
39 2 0.01
40 1 0.00
41 1 0.00
42 5 0.02
43 220 0.84
44 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTC
Found at i:17424901 original size:12 final size:12
Alignment explanation
Indices: 17424884--17424929 Score: 74
Period size: 12 Copynumber: 3.7 Consensus size: 12
17424874 AATAAAATAC
17424884 GCTCTCTCTCTT
1 GCTCTCTCTCTT
17424896 GCTCTCTCTCTT
1 GCTCTCTCTCTT
17424908 GCTCTCTCTCTTTT
1 GCTCTCTCTC--TT
17424922 GCTCTCTC
1 GCTCTCTC
17424930 ATTCTCTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 22 0.69
14 10 0.31
ACGTcount: A:0.00, C:0.41, G:0.09, T:0.50
Consensus pattern (12 bp):
GCTCTCTCTCTT
Found at i:17424904 original size:14 final size:14
Alignment explanation
Indices: 17424885--17424929 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
17424875 ATAAAATACG
17424885 CTCTCTCTCTTG--
1 CTCTCTCTCTTGCT
17424897 CTCTCTCTCTTGCT
1 CTCTCTCTCTTGCT
*
17424911 CTCTCTCTTTTGCT
1 CTCTCTCTCTTGCT
17424925 CTCTC
1 CTCTC
17424930 ATTCTCTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 12 0.40
14 18 0.60
ACGTcount: A:0.00, C:0.42, G:0.07, T:0.51
Consensus pattern (14 bp):
CTCTCTCTCTTGCT
Found at i:17431492 original size:20 final size:20
Alignment explanation
Indices: 17431467--17431505 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
17431457 TAGGATTTGA
17431467 AATTTAAAGTTTCAAGTTCG
1 AATTTAAAGTTTCAAGTTCG
*
17431487 AATTTAAAGTTTGAAGTTC
1 AATTTAAAGTTTCAAGTTC
17431506 TAAATTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (20 bp):
AATTTAAAGTTTCAAGTTCG
Found at i:17441843 original size:15 final size:16
Alignment explanation
Indices: 17441814--17441843 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17441804 AACAACACGA
17441814 TGAAAAGTGAAATAAC
1 TGAAAAGTGAAATAAC
17441830 TGAAAAGT-AAATAA
1 TGAAAAGTGAAATAA
17441844 AAAAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (16 bp):
TGAAAAGTGAAATAAC
Found at i:17463677 original size:23 final size:22
Alignment explanation
Indices: 17463651--17463694 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
17463641 AAAATATTTC
*
17463651 ATTAAATAATTTGGGTTGAATTA
1 ATTAAATAAATTGGGTT-AATTA
*
17463674 ATTAATTAAATTGGGTTAATT
1 ATTAAATAAATTGGGTTAATT
17463695 TTATTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (22 bp):
ATTAAATAAATTGGGTTAATTA
Found at i:17468785 original size:20 final size:20
Alignment explanation
Indices: 17468760--17468803 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
17468750 ATTAACAGAA
*
17468760 TTAAACTTGATTAAGTAAAG
1 TTAAACTAGATTAAGTAAAG
* *
17468780 TTAAACTAGATTAATTAAAT
1 TTAAACTAGATTAAGTAAAG
17468800 TTAA
1 TTAA
17468804 CTAAAGTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.39
Consensus pattern (20 bp):
TTAAACTAGATTAAGTAAAG
Found at i:17490370 original size:56 final size:56
Alignment explanation
Indices: 17490296--17490433 Score: 197
Period size: 56 Copynumber: 2.5 Consensus size: 56
17490286 ATAACAAGCA
* * * *
17490296 AAGACCATATTGTCTAAGACCTAGTTCAGATGGCTATGACATCATAT-AGGGAAATG
1 AAGACCATATTGTGTAAGACCTAGTCCAAATAGCTATGACATCATATGA-GGAAATG
* *
17490352 AAGATCATATTGTGTAAGACCTAGTCCAAATAGCTATGGCATCATATGAGGAAATG
1 AAGACCATATTGTGTAAGACCTAGTCCAAATAGCTATGACATCATATGAGGAAATG
*
17490408 AAGACCACATTGTGTAAGACCTAGTC
1 AAGACCATATTGTGTAAGACCTAGTC
17490434 TGAGACTATG
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
56 72 0.99
57 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (56 bp):
AAGACCATATTGTGTAAGACCTAGTCCAAATAGCTATGACATCATATGAGGAAATG
Found at i:17490649 original size:29 final size:30
Alignment explanation
Indices: 17490560--17490677 Score: 116
Period size: 29 Copynumber: 4.0 Consensus size: 30
17490550 TTACCTAAGA
*
17490560 GTGATGCCTTTGTGGCTGAATCTGTTATAT
1 GTGATGCCTTTGTGGCTGAATCTATTATAT
* * * * * *
17490590 GAGA-GTCTTTGTGGTTGATTTTGTTATAT
1 GTGATGCCTTTGTGGCTGAATCTATTATAT
*
17490619 GTGACGCCTTTGTGGCTG-ATCTATTATAT
1 GTGATGCCTTTGTGGCTGAATCTATTATAT
* *
17490648 GTGGTGCATTTGTGG-TGGAATCTATTATAT
1 GTGATGCCTTTGTGGCT-GAATCTATTATAT
17490678 AAAAGCCTAT
Statistics
Matches: 71, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
28 1 0.01
29 45 0.63
30 25 0.35
ACGTcount: A:0.18, C:0.10, G:0.27, T:0.45
Consensus pattern (30 bp):
GTGATGCCTTTGTGGCTGAATCTATTATAT
Found at i:17490676 original size:59 final size:59
Alignment explanation
Indices: 17490560--17490677 Score: 141
Period size: 59 Copynumber: 2.0 Consensus size: 59
17490550 TTACCTAAGA
* * * * * *
17490560 GTGATGCCTTTGTGGCTGAATCTGTTATATGAGAGTCTTTGTGGTTGATTTTGTTATAT
1 GTGACGCCTTTGTGGCTGAATCTATTATATGAGAGTCTTTGTGGTGGAATCTATTATAT
*
17490619 GTGACGCCTTTGTGGCTG-ATCTATTATATGTG-GTGCATTTGTGGTGGAATCTATTATAT
1 GTGACGCCTTTGTGGCTGAATCTATTATATGAGAGT-C-TTTGTGGTGGAATCTATTATAT
17490678 AAAAGCCTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
57 2 0.04
58 13 0.26
59 35 0.70
ACGTcount: A:0.18, C:0.10, G:0.27, T:0.45
Consensus pattern (59 bp):
GTGACGCCTTTGTGGCTGAATCTATTATATGAGAGTCTTTGTGGTGGAATCTATTATAT
Found at i:17491397 original size:14 final size:14
Alignment explanation
Indices: 17491378--17491410 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
17491368 AAGGTCTTAA
17491378 GACTATGTGATATC
1 GACTATGTGATATC
17491392 GACTATGTGATATC
1 GACTATGTGATATC
17491406 GACTA
1 GACTA
17491411 AGTTATATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (14 bp):
GACTATGTGATATC
Found at i:17491418 original size:14 final size:14
Alignment explanation
Indices: 17491378--17491418 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
17491368 AAGGTCTTAA
*
17491378 GACTATGTGATATC
1 GACTAAGTGATATC
*
17491392 GACTATGTGATATC
1 GACTAAGTGATATC
*
17491406 GACTAAGTTATAT
1 GACTAAGTGATAT
17491419 GGAAAGCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.37
Consensus pattern (14 bp):
GACTAAGTGATATC
Found at i:17494122 original size:21 final size:20
Alignment explanation
Indices: 17494086--17494127 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
17494076 GTGTAATGAT
17494086 TAAAATAATTATTTTATAAAA
1 TAAAATAATTATTTTA-AAAA
17494107 TAAAATATATTA-TTTAAAAA
1 TAAAATA-ATTATTTTAAAAA
17494127 T
1 T
17494128 GTTTTTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 11 0.55
22 4 0.20
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAAATAATTATTTTAAAAA
Found at i:17496017 original size:31 final size:31
Alignment explanation
Indices: 17495976--17496046 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
17495966 TTAATACTTG
*
17495976 AATTTCATTTATTTTTTAATTAAAATCATTT
1 AATTTTATTTATTTTTTAATTAAAATCATTT
*
17496007 AATTTTATTTATTTTTTAATTAAAATTATTT
1 AATTTTATTTATTTTTTAATTAAAATCATTT
17496038 AATTTTATT
1 AATTTTATT
17496047 CACAAAAAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (31 bp):
AATTTTATTTATTTTTTAATTAAAATCATTT
Found at i:17496035 original size:17 final size:17
Alignment explanation
Indices: 17495984--17496037 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
17495974 TGAATTTCAT
17495984 TTATTTTTTAATTAAAA
1 TTATTTTTTAATTAAAA
* ** *
17496001 TCA---TTTAATTTTAT
1 TTATTTTTTAATTAAAA
17496015 TTATTTTTTAATTAAAA
1 TTATTTTTTAATTAAAA
17496032 TTATTT
1 TTATTT
17496038 AATTTTATTC
Statistics
Matches: 26, Mismatches: 8, Indels: 6
0.65 0.20 0.15
Matches are distributed among these distances:
14 10 0.38
17 16 0.62
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
TTATTTTTTAATTAAAA
Found at i:17496082 original size:19 final size:19
Alignment explanation
Indices: 17496060--17496118 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
17496050 AAAAAAGACA
17496060 TTTAATTTCATTTATTACT
1 TTTAATTTCATTTATTACT
17496079 TTTAA----ATTTATTAC-
1 TTTAATTTCATTTATTACT
* *
17496093 TTGAATTTCATTTATTCCT
1 TTTAATTTCATTTATTACT
*
17496112 TTAAATT
1 TTTAATT
17496119 AATTATCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 4 0.12
15 9 0.28
18 8 0.25
19 11 0.34
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (19 bp):
TTTAATTTCATTTATTACT
Found at i:17507892 original size:56 final size:56
Alignment explanation
Indices: 17507818--17507955 Score: 188
Period size: 56 Copynumber: 2.5 Consensus size: 56
17507808 ATAACAAGCA
* * * *
17507818 AAGACCATATTGTCTAAGACCTAGTTCAGATGGCTATGACATCATAT-AGGGAAATG
1 AAGACCATATTGTATAAGACCTAGTCCAAATAGCTATGACATCATATGA-GGAAATG
* *
17507874 AAGATCATATTGTATAAGACCTAGTCCAAATAGCTATGGCATCATATGAGGAAATG
1 AAGACCATATTGTATAAGACCTAGTCCAAATAGCTATGACATCATATGAGGAAATG
* *
17507930 AAGACCACATTGTGTAAGACCTAGTC
1 AAGACCATATTGTATAAGACCTAGTC
17507956 TGAGACTATG
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
56 71 0.99
57 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (56 bp):
AAGACCATATTGTATAAGACCTAGTCCAAATAGCTATGACATCATATGAGGAAATG
Found at i:17508136 original size:29 final size:30
Alignment explanation
Indices: 17508087--17508160 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
17508077 TAAGAGTGAT
*
17508087 GCCTTTGTGGCTGAATCTGTTATATGAGA-
1 GCCTTTGTGGCTGATTCTGTTATATGAGAC
* * * *
17508116 GTCTTTGTGGTTGATTTTGTTATATGTGAC
1 GCCTTTGTGGCTGATTCTGTTATATGAGAC
17508146 GCCTTTGTGGCTGAT
1 GCCTTTGTGGCTGAT
17508161 CTATTACATG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 24 0.65
30 13 0.35
ACGTcount: A:0.15, C:0.12, G:0.28, T:0.45
Consensus pattern (30 bp):
GCCTTTGTGGCTGATTCTGTTATATGAGAC
Found at i:17508198 original size:59 final size:59
Alignment explanation
Indices: 17508082--17508199 Score: 132
Period size: 59 Copynumber: 2.0 Consensus size: 59
17508072 TTACCTAAGA
* * * * * * *
17508082 GTGATGCCTTTGTGGCTGAATCTGTTATATGAGAGTCTTTGTGGTTGATTTTGTTATAT
1 GTGACGCCTTTGTGGCTGAATCTATTACATGAGAGTCTTTGTGGTGGAATCTATTATAT
*
17508141 GTGACGCCTTTGTGGCTG-ATCTATTACATGTG-GTGCATTTGTGGTGGAATCTATTATAT
1 GTGACGCCTTTGTGGCTGAATCTATTACATGAGAGT-C-TTTGTGGTGGAATCTATTATAT
17508200 AAAAGCCTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
57 2 0.04
58 12 0.24
59 35 0.71
ACGTcount: A:0.18, C:0.11, G:0.27, T:0.44
Consensus pattern (59 bp):
GTGACGCCTTTGTGGCTGAATCTATTACATGAGAGTCTTTGTGGTGGAATCTATTATAT
Found at i:17511635 original size:22 final size:21
Alignment explanation
Indices: 17511597--17511640 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
17511587 GTGTAATGAT
17511597 TAAAATAATTATTTTTATAAAA
1 TAAAATAATTATTTTTA-AAAA
17511619 TAAAATATATTA-TTTTAAAAA
1 TAAAATA-ATTATTTTTAAAAA
17511640 T
1 T
17511641 GTTTTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 12 0.57
23 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TAAAATAATTATTTTTAAAAA
Found at i:17520248 original size:23 final size:23
Alignment explanation
Indices: 17520047--17520239 Score: 314
Period size: 23 Copynumber: 8.4 Consensus size: 23
17520037 ATTAAATGTA
* *
17520047 TTAAATATTAATGTGATGTATAC
1 TTAAATATTAATGTGATTTATGC
* *
17520070 TTAAATATTAATGTGGTTTATAC
1 TTAAATATTAATGTGATTTATGC
*
17520093 CTAAATATTAATGTGATTTATGC
1 TTAAATATTAATGTGATTTATGC
17520116 TTAAATATTAATGTGATTTATGC
1 TTAAATATTAATGTGATTTATGC
*
17520139 TTAAATATTAATGTGATTTGTGC
1 TTAAATATTAATGTGATTTATGC
17520162 TTAAATATTAATGTGATTTATGC
1 TTAAATATTAATGTGATTTATGC
*
17520185 TTAAATATTAATGTGATTTGTGC
1 TTAAATATTAATGTGATTTATGC
*
17520208 TTAAATATTAATATGATTTATGC
1 TTAAATATTAATGTGATTTATGC
17520231 TTAAATATT
1 TTAAATATT
17520240 TCTATGATTA
Statistics
Matches: 159, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 159 1.00
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (23 bp):
TTAAATATTAATGTGATTTATGC
Found at i:17521888 original size:9 final size:9
Alignment explanation
Indices: 17521874--17521918 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
17521864 GCAAATGATT
17521874 TTAAAATTA
1 TTAAAATTA
17521883 TTAAAATTA
1 TTAAAATTA
17521892 TT----TTA
1 TTAAAATTA
17521897 TATAAAATTA
1 T-TAAAATTA
17521907 TTAAAATTA
1 TTAAAATTA
17521916 TTA
1 TTA
17521919 TATTAAAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
5 4 0.13
6 1 0.03
9 22 0.71
10 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (9 bp):
TTAAAATTA
Found at i:17521938 original size:27 final size:24
Alignment explanation
Indices: 17521875--17521932 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
17521865 CAAATGATTT
*
17521875 TAAAATTATTAAAATTATTTTATA
1 TAAAATTATTAAAATTATTATATA
17521899 TAAAATTATTAAAATTATTATAT-
1 TAAAATTATTAAAATTATTATATA
17521922 TAAAATCTATT
1 TAAAAT-TATT
17521933 TTTAAAGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 6 0.19
24 26 0.81
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
TAAAATTATTAAAATTATTATATA
Found at i:17522595 original size:27 final size:28
Alignment explanation
Indices: 17522533--17522618 Score: 93
Period size: 27 Copynumber: 3.0 Consensus size: 28
17522523 AGCAATCCTC
17522533 AAAATCTCCAAAATCAAAAACCCTAAACA
1 AAAATCTCC-AAATCAAAAACCCTAAACA
* * *
17522562 AAAATCTCCAAATC-AAAACCCTTACCC
1 AAAATCTCCAAATCAAAAACCCTAAACA
* * *
17522589 AAGATCTCCAAATTTAACAACCCTAAACA
1 AAAATCTCCAAA-TCAAAAACCCTAAACA
17522618 A
1 A
17522619 TTCATGGCGA
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
27 21 0.46
28 6 0.13
29 19 0.41
ACGTcount: A:0.51, C:0.30, G:0.01, T:0.17
Consensus pattern (28 bp):
AAAATCTCCAAATCAAAAACCCTAAACA
Found at i:17523078 original size:37 final size:38
Alignment explanation
Indices: 17523035--17523116 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
17523025 GTAACGTTCT
*
17523035 ATTTTAATAATTTTATA-TTGAAAATAA-TAATATAATA
1 ATTTTAATAATTTTATATTTCAAAA-AATTAATATAATA
* *
17523072 ATTTTAATAATTTTATATTTCAAAAAATTATTTTAATA
1 ATTTTAATAATTTTATATTTCAAAAAATTAATATAATA
17523110 ATTTTAA
1 ATTTTAA
17523117 AACAACTTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
37 19 0.47
38 21 0.52
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (38 bp):
ATTTTAATAATTTTATATTTCAAAAAATTAATATAATA
Found at i:17524295 original size:77 final size:77
Alignment explanation
Indices: 17524147--17524295 Score: 190
Period size: 77 Copynumber: 1.9 Consensus size: 77
17524137 AGTTCAAATC
* * * * *
17524147 ACAAGATAATCCCATGTATGTCAAGAATACAATCTAGATCATTCTTGTGCCTTTACGTATGTCAA
1 ACAAGATAATCCCATGTATATCAAGAATACAATCTAGATCATTCATGTGCATTTACATATATCAA
**
17524212 TGAGATCGATTT
66 CAAGATCGATTT
* * ** *
17524224 ACAAGATAATCTCATGTTTATCAAGTGTTCAATCTAGATCATTCATGTGCATTTACATATATCAA
1 ACAAGATAATCCCATGTATATCAAGAATACAATCTAGATCATTCATGTGCATTTACATATATCAA
17524289 CAAGATC
66 CAAGATC
17524296 CTTTAATAAT
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
77 60 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (77 bp):
ACAAGATAATCCCATGTATATCAAGAATACAATCTAGATCATTCATGTGCATTTACATATATCAA
CAAGATCGATTT
Found at i:17524433 original size:20 final size:20
Alignment explanation
Indices: 17524410--17524456 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
17524400 GGGAATGATT
* * * *
17524410 GTGCAATTAGGGGCACTAGA
1 GTGCAAATAGGGACACAAAA
17524430 GTGCAAATAGGGACACAAAA
1 GTGCAAATAGGGACACAAAA
17524450 GTGCAAA
1 GTGCAAA
17524457 CCTCTACAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.15, G:0.30, T:0.15
Consensus pattern (20 bp):
GTGCAAATAGGGACACAAAA
Found at i:17526938 original size:16 final size:16
Alignment explanation
Indices: 17526917--17526976 Score: 72
Period size: 16 Copynumber: 3.9 Consensus size: 16
17526907 TTGAATTACT
17526917 TATTACAGTTCTATTC
1 TATTACAGTTCTATTC
*
17526933 TATTACAGTTCTATTA
1 TATTACAGTTCTATTC
17526949 TATTAC---TCTATTC
1 TATTACAGTTCTATTC
* *
17526962 TATTAAAGTCCTATT
1 TATTACAGTTCTATT
17526977 TCATTCACCC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
13 11 0.30
16 26 0.70
ACGTcount: A:0.28, C:0.17, G:0.05, T:0.50
Consensus pattern (16 bp):
TATTACAGTTCTATTC
Found at i:17527187 original size:17 final size:17
Alignment explanation
Indices: 17527167--17527204 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
17527157 CTCTCTTGAC
* *
17527167 CTTTAATCTTTCATCTT
1 CTTTAACCTTTCATATT
17527184 CTTTAACCTTTCATATT
1 CTTTAACCTTTCATATT
17527201 CTTT
1 CTTT
17527205 TAACTACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.58
Consensus pattern (17 bp):
CTTTAACCTTTCATATT
Found at i:17527192 original size:24 final size:24
Alignment explanation
Indices: 17527147--17527194 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
17527137 ATAGATGTTC
*
17527147 AATCTTTCATCTCTCTTGACCTTT
1 AATCTTTCATCTCTCTTAACCTTT
17527171 AATCTTTCATCT-TCTTTAACCTTT
1 AATCTTTCATCTCTC-TTAACCTTT
17527195 CATATTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.19, C:0.27, G:0.02, T:0.52
Consensus pattern (24 bp):
AATCTTTCATCTCTCTTAACCTTT
Found at i:17529120 original size:16 final size:16
Alignment explanation
Indices: 17529099--17529133 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
17529089 TATCCATAAT
17529099 TCTATGAATTTTTAAA
1 TCTATGAATTTTTAAA
17529115 TCTATGAATTTTTAAA
1 TCTATGAATTTTTAAA
17529131 TCT
1 TCT
17529134 CTTCACGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (16 bp):
TCTATGAATTTTTAAA
Found at i:17531239 original size:92 final size:92
Alignment explanation
Indices: 17530948--17550652 Score: 31831
Period size: 92 Copynumber: 213.7 Consensus size: 92
17530938 NNNNNNNNNN
17530948 ATAGGAATTGATG-TTGAAGCTTCATCTTGCT-TCTACTAACAACATTCAGAGAGATAAAGACTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCT-TACT-ACAAC-TTCAGAGAGATAAAGACTT
*
17531011 GCTATCCCACTTTACTACAACTTCAAGAGG
63 GCTATCCAACTTTACTACAACTTCAAGAGG
*
17531041 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTA-AACAACTTCAGAGAG-TAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17531104 ATCCAGCTTTACTACAACCTTCAAGAGG
66 ATCCAACTTTACTACAA-CTTCAAGAGG
*
17531132 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17531197 ATCCAACTTTACTACAACTTCTAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17531224 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCCTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17531289 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17531316 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17531381 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17531408 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17531473 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17531500 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17531565 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
** *
17531592 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTTGTACAACTTTAGAGAGAGATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAAC-TT-CAGAGAGATAAAGACTTG
17531657 CTATCCAACTTTACTACAACTTCAAGAGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
17531686 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17531751 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17531778 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17531843 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17531870 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17531935 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17531962 ATAGGAATTGATGTTTGAACCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17532027 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17532054 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAAGACTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGAT-AAAGACTT
17532119 GCTATCCAACTTTACTACAACTTCAAGAGG
63 GCTATCCAACTTTACTACAACTTCAAGAGG
** * *
17532149 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17532214 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17532241 ATAGGAATTGATG-TTGAAGCTTCATCTTGCTCTTACTACAAACTTCAGAGAGATAAAGACTTGC
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTAC-AACTTCAGAGAGATAAAGACTTGC
17532305 TATCCAACTTTACTACAACTTCAAGAGG
65 TATCCAACTTTACTACAACTTCAAGAGG
17532333 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17532398 ATCCAACTTTACTACAACTTCCAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17532425 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17532490 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17532517 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCA-AGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17532581 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17532608 ATAGGAATTGATGTTTGAAGCTTCATCTTGCCTCTTACTACAACTTCAGAGAGATAAAGACTTGT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTG-CTCTTACTACAACTTCAGAGAGATAAAGACTTGC
17532673 TATCCAACTTTACTACAACTTCAAGAGG
65 TATCCAACTTTACTACAACTTCAAGAGG
* *
17532701 ATAGGAATT-ATGTTTGAAACTTCATCTTGCTCTTACAACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17532765 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17532792 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAACTTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
17532857 CTATCCAACTTTACTACAACTTCAAGAGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
* *
17532886 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAATTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17532951 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17532978 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17533043 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17533070 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTATTACAGCTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17533135 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17533162 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17533227 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17533254 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGATTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17533319 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17533346 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAGAGATATAAAGACTTGC
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC-AGAGAGATAAAGACTTGC
17533411 TATCCAACTTTACTACAACTTCAAGAGG
65 TATCCAACTTTACTACAACTTCAAGAGG
17533439 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAG--ATAAAGACTTG
*
17533504 CTATCCAACTTTACTACCACTTCAAGAGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** *
17533533 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGACTTG-T
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17533597 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* ** *
17533624 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCATTTTCAAAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* *
17533689 ATCCAACTTTACTATAACTTTAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17533716 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTAACTACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17533781 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17533808 -GAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17533872 ATCCAACTTTACTACAACCTT-AAGAGG
66 ATCCAACTTTACTACAA-CTTCAAGAGG
* *
17533899 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17533964 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17533991 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTAC-ACTTTCAGAGACATATAGACTTGC
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAAC-TTCAGAGAGATAAAGACTTGC
17534055 TATCCAACTTTACTACAACTTCAAGAGG
65 TATCCAACTTTACTACAACTTCAAGAGG
*
17534083 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17534148 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17534175 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGA-TTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17534239 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17534266 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATAAAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGAT--AAAGACTTG
*
17534331 CTATCCAACTTTACTACAACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * * *
17534360 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGATAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17534425 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * ** *
17534452 ATAGGGATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCATTTTCAAAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* *
17534517 ATCCAACTTTACTATAACTTTAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * * *
17534544 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTAACTACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17534609 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17534636 AGAGGAATTGATGTTTTAAGCTTCATCTTGCTCTTAATACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17534701 ATCCAACTTTACTACAACCTT-AAGAGG
66 ATCCAACTTTACTACAA-CTTCAAGAGG
* * *
17534728 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17534793 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17534820 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAG-TAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17534884 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17534911 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17534976 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17535003 ATAGGAATTTATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17535068 ATCCAACTTTACTACAGCCTT-AAGAGG
66 ATCCAACTTTACTACA-ACTTCAAGAGG
* * *
17535095 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17535160 ATCCAACTTTACTACAACTTCTAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * * * *
17535187 ATAGGAGTTAATGTTTGAAACTTCATCTTGGTCTTACTACAACTTTAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17535252 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17535279 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17535344 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17535371 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTTAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17535436 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17535463 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17535528 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17535555 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAAACTTCAGAGAGAGATAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTAC-AACTTCAGAGAGATA-AAGACTTG
17535620 CTATCCAACTTTACTACAACTTCCAAGAGG
64 CTATCCAACTTTACTACAACTT-CAAGAGG
* *
17535650 ATAGGAATTGATGTTTGAAGCTTCATCTTCCTCTTACTACAACTTTAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17535715 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17535742 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGACATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17535807 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17535834 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17535899 ATCCAACTTTACTTCAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17535926 ATAGGAATTGATGTTTGAACCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGATTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17535991 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17536018 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
* *
17536083 CTATCCAACTTTACTACCACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * * *
17536112 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGATAGATAAAAGACTTGT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGAT-AAAGACTTGC
**
17536177 TATCGTACTTTACTACAACTTCAAGAGG
65 TATCCAACTTTACTACAACTTCAAGAGG
*
17536205 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17536270 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17536297 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* *
17536362 ATCCAGCTTTACTACAACTTCCAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17536389 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17536454 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17536481 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAAAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17536546 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17536573 ATAGGAATTGATGTTTGAAGCTTCATCTTCCTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* * *
17536638 ATTCAACTTTACTACAAATTCAAGAGC
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17536665 ATAGGAATTAATGTTTGAAACTTCATCATGCTCTTACAACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17536730 ATCCAACTTTACTACAACTTCAACAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17536757 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
* *
17536822 CTATCCAACTTTACTACCACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
* *
17536851 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17536916 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17536943 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17537008 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17537035 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTATTACAGCTTCAGAGACATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17537100 ATCCAACTTTAC-ACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17537126 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCAACTTTAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17537191 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17537218 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17537283 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17537310 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAGAAGAGATAAAGACTTGC
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAG-AGAGATAAAGACTTGC
*
17537375 TATCCAACTTTACTACAACTTCAAGCGG
65 TATCCAACTTTACTACAACTTCAAGAGG
** *
17537403 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATATAAAGACTTA
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAG--ATAAAGACTTG
*
17537468 CTATCCAACTTTACTAC-ACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * *
17537496 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAGAGACTTGG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAA-AGACTTGC
**
17537561 TATCGTACTTTACTACAACTTCAAGAGG
65 TATCCAACTTTACTACAACTTCAAGAGG
* * ** *
17537589 ATAGGGATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCATTTTCAAAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* *
17537654 ATCCAACTTTACTATAACTTTAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17537681 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTAACTACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17537746 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17537773 AGAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTA-TACAACTTCAGAGAGTTAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17537837 ATCCAGCTTTACTACAACCTT-AAGAGG
66 ATCCAACTTTACTACAA-CTTCAAGAGG
* *
17537864 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17537929 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17537956 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAGCTTCAGAGACATATAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17538021 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17538048 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCAACTTCCGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17538113 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17538140 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17538205 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17538232 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
17538297 CTATCCAACTTTACTACAACTTCAAGAGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * *
17538326 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17538391 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17538418 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17538483 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17538510 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTTAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17538575 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17538602 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17538667 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* ** * *
17538694 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTGTACAAATTTAGAGAGAGATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTAC-AACTT-CAGAGAGATAAAGACTTG
*
17538759 CTATCCAACTTTACTACAACTTCAA-ATG
64 CTATCCAACTTTACTACAACTTCAAGAGG
* *
17538787 ATAGGAATTGATGTTTGAAGCTTCATCTTCCTCTTACTACAACTTTAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17538852 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17538879 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17538944 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17538971 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17539036 ATCCAACTTTACTTCAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17539063 ATAGGAATTGATGTTTGAACCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGATTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17539128 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17539155 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
*
17539220 CTATCCAACTTTACTACCACTTCAAGAGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
* * *
17539249 ATAGGAATTG-CGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGATAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17539313 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17539340 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17539405 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17539432 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17539497 ATCCAGCTTTACTACAACTTC-AGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17539523 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17539588 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17539615 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAAAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17539680 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17539707 ATAGGAATTGATGTTTGAAGCTTCATCTTCCTCTTACTACAACTTCAGAGATATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* * *
17539772 ATTCAACTTTACTACAAATTCAAGAGC
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17539799 ATAGGAATTGATGTTTGAAACATCATCATGCTCTTACAACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17539864 ATCCAACTTTACTACAACTTCAACAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17539891 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
* *
17539956 CTATCCAACTTTACTACCACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * * *
17539985 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17540050 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17540077 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17540142 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17540169 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTATTACAGCTTCAGAGACATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17540234 ATCCAACTTTACAACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17540261 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTTAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17540326 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17540353 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGATTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17540418 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17540445 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
* *
17540510 CTATCCAACTTTACTACCACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * *
17540539 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATATAAAGACTTA
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAG--ATAAAGACTTG
* *
17540604 CTATCCAACTTTACTACCACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * * *
17540633 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAGAGACTTGGT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17540698 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * ** * *
17540725 ATAGGGATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCATTTTCAAAGAGATAAATACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17540790 ATCCAACTTTACTATAACTT-AAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17540816 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTAACTACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17540881 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
** *
17540908 GGAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAGAGAG-TAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17540972 ATCCAGCTTTACTACAACCTT-AAGAGG
66 ATCCAACTTTACTACAA-CTTCAAGAGG
* *
17540999 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17541064 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17541091 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAGCTTCAGAGACATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17541156 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17541183 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCAACTTCCGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17541248 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17541275 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGATTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17541340 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17541367 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATAAAAGACTTGC
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGAT-AAAGACTTGC
* *
17541432 TATCCAACTTTACTACCACTTCAAGCGG
65 TATCCAACTTTACTACAACTTCAAGAGG
** * * * *
17541460 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGATAGATAGAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17541525 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * ** * *
17541552 ATAGGGATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCATTTTCAAAGAGATAAATACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* * *
17541617 ATCCAACTTTACTATAACTTTAAGAGT
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * * *
17541644 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTAACTACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17541709 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17541736 AGAGGAATTGATGTTTTAAGCTTCATCTTGCTCTTAATACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17541801 ATCCAGCTTTACTACAACCTT-AAGAGG
66 ATCCAACTTTACTACAA-CTTCAAGAGG
* * *
17541828 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17541893 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17541920 ATAGGAATTGATGTTTGAAGCTTGATCTTGCTCTTACTACAACTTCAGAGACG-TAAAGACTTGC
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGA-GATAAAGACTTGC
17541984 TATCCAACTTTACTACAACTTCAAGAGG
65 TATCCAACTTTACTACAACTTCAAGAGG
* * *
17542012 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17542077 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17542104 ATAGGAATTTATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17542169 ATCCAACTTTACTACAGCCTT-AAGAGG
66 ATCCAACTTTACTACA-ACTTCAAGAGG
* * *
17542196 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17542261 ATCCAACTTTACTACAACTTCTAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * * * *
17542288 ATAGGAGTTAATGTTTGAAACTTCATCTTGGTCTTACTACAACTTTAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17542353 ATCCAACTTTCCTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17542380 ATAGGAATTGATGTTTGAAGCTTGATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17542445 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17542472 ATAGGAATTGATGTTTGAAGCTTCATCTTGTTCTTACTACAACTTTAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17542537 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17542564 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17542629 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* ** * * *
17542656 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTGTACAAATTTAGAGAGAGATAAAGACGTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTAC-AACTT-CAGAGAGATAAAGACTTG
*
17542721 CTATCCAACTTTACTACAACTTCCAA-ATG
64 CTATCCAACTTTACTACAACTT-CAAGAGG
* *
17542750 ATAGGAATTGATGTTTGAAGCTTCATCTTCCTCTTACTACAACTTTAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17542815 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17542842 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGACATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17542907 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17542934 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17542999 ATCCAACTTTACTTCAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17543026 ATAGGAATTGATGTTTGAACCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGATTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17543091 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17543118 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
* *
17543183 CTATCCAACTTTACTACCACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * *
17543212 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATATAAAGACTTA
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAG--ATAAAGACTTG
* *
17543277 CTATCCAACTTTACTACCACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * * *
17543306 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAGAGACTTGGT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17543371 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * ** *
17543398 ATAGGGATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCATTTTCA-AGAGATAAATACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* *
17543462 ATCCAACTTTACTATAACTTTAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17543489 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTAACTACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17543554 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17543581 AGAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAGAGAGTTAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17543646 ATCCAGCTTTACTACAACCTT-AAGAGG
66 ATCCAACTTTACTACAA-CTTCAAGAGG
* * *
17543673 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGGCTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17543738 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17543765 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAGCTTCAGAGACATATAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17543830 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17543857 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCAACTTCCGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17543922 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17543949 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGATTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17544014 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17544041 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATAAAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGAT--AAAGACTTG
* *
17544106 CTATCCAACTTTACTACCACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * * * *
17544135 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGATAGATAGAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17544200 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * ** * *
17544227 ATAGGGATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCATTTTCAAAGAGATAAATACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* * *
17544292 ATCCAACTTTACTATAACTTTAAGAGT
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * * *
17544319 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTAACTACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17544384 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17544411 AGAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17544476 ATCCAGCTTTACTACAACCTT-AAGAGG
66 ATCCAACTTTACTACAA-CTTCAAGAGG
* * *
17544503 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17544568 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17544595 ATAGGAATTGATGTTTGAAGCTTGATCTTGCTCTTACTACAACTTCAGAGACG-TAAAGACTTGC
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGA-GATAAAGACTTGC
17544659 TATCCAACTTTACTACAACTTCAAGAGG
65 TATCCAACTTTACTACAACTTCAAGAGG
* * *
17544687 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17544752 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17544779 ATAGGAATTTATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17544844 ATCCAACTTTACTACAGCCTT-AAGAGG
66 ATCCAACTTTACTACA-ACTTCAAGAGG
* * *
17544871 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17544936 ATCCAACTTTACTACAACTTCTAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * * * *
17544963 ATAGGAGTTAATGTTTGAAACTTCATCTTGGTCTTACTACAACTTTAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17545028 ATCCAACTTTCCTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17545055 ATAGGAATTGATGTTTGAAGCTTGATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17545120 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17545147 ATAGGAATTGATGTTTGAAGCTTCATCTTGTTCTTACTACAACTTTAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17545212 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17545239 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGATTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17545304 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17545331 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATAAAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGAT--AAAGACTTG
* *
17545396 CTATCCAACTTTACTACCACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * * * *
17545425 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGATAGATAGAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17545490 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * ** * *
17545517 ATAGGGATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCATTTTCAAAGAGATAAATACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* * *
17545582 ATCCAACTTTACTATAACTTTAAGAGT
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * * *
17545609 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTAACTACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17545674 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17545701 AGAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17545766 ATCCAGCTTTACTACAACCTT-AAGAGG
66 ATCCAACTTTACTACAA-CTTCAAGAGG
* * *
17545793 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17545858 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17545885 ATAGGAATTGATGTTTGAAGCTTGATCTTGCTCTTACTACAACTTCAGAGACG-TAAAGACTTGC
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGA-GATAAAGACTTGC
17545949 TATCCAACTTTACTACAACTTCAAGAGG
65 TATCCAACTTTACTACAACTTCAAGAGG
* * *
17545977 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17546042 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17546069 ATAGGAATTTATGTTTGAAGCTTCATCTTGCTCTTAATACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17546134 ATCCAACTTTACTACAGCCTT-AAGAGG
66 ATCCAACTTTACTACA-ACTTCAAGAGG
* * *
17546161 ATAGGAATTGATGTTTGAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17546226 ATCCAACTTTACTACAACTTCTAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * * * *
17546253 ATAGGAGTTAATGTTTGAAACTTCATCTTGGTCTTACTACAACTTTAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17546318 ATCCAACTTTCCTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17546345 ATAGGAATTGATGTTTGAAGCTTGATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17546410 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17546437 ATAGGAATTGATGTTTGAAGCTTCATCTTGTTCTTACTACAACTTTAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17546502 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17546529 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17546594 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* ** * *
17546621 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTGTACAAATTTAGAGAGAGATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTAC-AACTT-CAGAGAGATAAAGACTTG
*
17546686 CTATCCAACTTTACTACAACTTCCAA-ATG
64 CTATCCAACTTTACTACAACTT-CAAGAGG
* *
17546715 ATAGGAATTGAT-TTTGAAGCTTCATCTTCCTCTTACTACAACTTTAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17546779 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17546806 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGACATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17546871 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17546898 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17546963 ATCCAACTTTACTTCAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17546990 ATAGGAATTGATGTTTGAACCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGATTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17547055 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17547082 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
* *
17547147 CTATCCAACTTTACTACCACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * * *
17547176 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGATAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17547241 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17547268 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17547333 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17547360 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* *
17547425 ATCCAGCTTTACTACAACTTCCAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17547452 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17547517 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17547544 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAAAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17547609 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17547636 ATAGGAATTGATGTTTGAAGCTTCATCTTCCTCTTACTACAACTTCAGAGATATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* * *
17547701 ATTCAACTTTACTACAAATTCAAGAGC
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * * *
17547728 ATAGGAATTAATGTTTGAAACATCATCATGCTCTTACAACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17547793 ATCCAACTTTACTACAACTTCAACAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17547820 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
17547885 CTATCCAACTTTACTACAACTTCAAGAGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * *
17547914 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17547979 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * ** * *
17548006 ATAGGGATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCATTTTCAAAGAGATAAATACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* *
17548071 ATCCAACTTTACTATAACTTTAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17548098 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTAACTACAACTTCAAAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17548163 ATCCAATTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17548190 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTAGAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17548255 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* ** * *
17548282 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTGTACAAATTTAGAGAGAGATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTAC-AACTT-CAGAGAGATAAAGACTTG
* *
17548347 CTATCCAACTTTACTACAACTTCCAGATG
64 CTATCCAACTTTACTACAACTTCAAGAGG
* *
17548376 ATAGGAATTGATGTTTGAAGCTTCATCTTCCTCTTACTACAACTTTAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17548441 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17548468 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGACATAAAAACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17548533 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
17548560 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17548625 ATCCAACTTTACTTCAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17548652 ATAGGAATTGATGTTTGAACCTTCATCTTGCTCTTACTACAAATTTAGAGGGAGATAAAGTCTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGA--GAGATAAAGACTTG
17548717 CTATCCAACTTTACTACAACTTCAAGAGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
* * *
17548746 ATAGGAATTTATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17548811 ATCCAACTTTACTACAAATTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * * *
17548838 ATAGGAATTAAGGTTTGAAACATCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17548903 ATCCTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17548930 ATAGGTATTGATGTTTGAAGCTTCATCTTGCTCTTATTGCAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17548995 ATCCAACTTTACTACAACTTTAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17549022 ATAGGAATTGATGCTTGACA-CTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGT
1 ATAGGAATTGATGTTTGA-AGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGC
* *
17549086 TATCCAATTTTACTACAACTTTAAGAGG
65 TATCCAACTTTACTACAACTTCAAGAGG
* * * *
17549114 ATAGGAATTGATGTTTGAAGCTTCGTCTTCCTCTTACTACAACTTTAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17549179 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17549206 ATAGGAATTGATGTTTGATGCTTCATCTTGCTCTTACTACAACTTTAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17549271 ATCCAACTTTACTACAACTTTAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* *
17549298 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTTTTACTACAACTGCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* *
17549363 ATCCAGCTTTACTACAACTTCCAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17549390 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17549455 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17549482 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGATTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17549547 ATCCAACTTTACTATAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17549574 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
* *
17549639 CTATCCAACTTTACTACCACTTCAAGCGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * * *
17549668 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGATAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17549733 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17549760 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17549825 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17549852 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCATAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* *
17549917 ATCCAGCTTTACTACAACTTCCAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17549944 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
17550009 ATCCAACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
*
17550036 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAAAGAGATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17550101 ATCCAACTTTACTACAACTTCAAAAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17550128 ATAGGAATTGATGTTTGAAGCTTCATCTTCCTCTTACTACAACTTCAGAGATATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* * *
17550193 ATTCAACTTTACTACAAATTCAAGAGC
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * * *
17550220 ATAGGAATTAATGTTTGAAACATCATCTTGCTCTTACAACAACTTCAGAGAAATAAAGACTTGCT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
*
17550285 ATCCAACTTTACTACAACTTCAACAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * * *
17550312 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTTTCTACAAATTCAAAGAGATATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTC--AGAGAGATAAAGACTTG
17550377 CTATCCAACTTTACTACAACTTCAAGAGG
64 CTATCCAACTTTACTACAACTTCAAGAGG
** * *
17550406 ATAGGAATTGGCGTTTGAAGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGATAAAGACTTGTT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
**
17550471 ATCGTACTTTACTACAACTTCAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * ** * * *
17550498 ATAGGGATTGATGTTTGAAGCTTCATCTTGCTCTTACTGCATTTTCAAAGAGATAAATACTTACT
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
* *
17550563 ATCCAACTTTACTATAACTTTAAGAGG
66 ATCCAACTTTACTACAACTTCAAGAGG
* * *
17550590 ATAGGAATTGATGTTTGAAACTTCATCTTGCTCTAACTACAACTTCAAAGAGATAAAGACTTG
1 ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTG
17550653 TTATTTTTTT
Statistics
Matches: 18160, Mismatches: 1329, Indels: 247
0.92 0.07 0.01
Matches are distributed among these distances:
90 30 0.00
91 1244 0.07
92 13987 0.77
93 782 0.04
94 1987 0.11
95 130 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (92 bp):
ATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCT
ATCCAACTTTACTACAACTTCAAGAGG
Found at i:17562569 original size:29 final size:30
Alignment explanation
Indices: 17562537--17562602 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 30
17562527 AAAACGGGAC
17562537 TTTTTGGATAC-CTA-GAGGC-AAAATGGTAA
1 TTTTTGGA-ACTCTAGGAGGCAAAAATGG-AA
*
17562566 -TTTTGG-ACTCTAGGGGGCAAAAATGGAA
1 TTTTTGGAACTCTAGGAGGCAAAAATGGAA
17562594 TTTTTGGAA
1 TTTTTGGAA
17562603 AATTTAGGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
26 2 0.06
27 3 0.10
28 12 0.39
29 13 0.42
30 1 0.03
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (30 bp):
TTTTTGGAACTCTAGGAGGCAAAAATGGAA
Found at i:17562617 original size:29 final size:29
Alignment explanation
Indices: 17562584--17562865 Score: 134
Period size: 29 Copynumber: 9.7 Consensus size: 29
17562574 TCTAGGGGGC
17562584 AAAAATGGAATTTTTGGAAAATTTAGGGTT
1 AAAAATGGAATTTTTGGAAAATTTAGGG-T
* ** **
17562614 AAAAAT-GAAATTTTGG-ATGTTCGGGGGT
1 AAAAATGGAATTTTTGGAAAATT-TAGGGT
* * *
17562642 -AAAATGGAAATTTTTGGAAAAATCAGGAT
1 AAAAATGG-AATTTTTGGAAAATTTAGGGT
* * * *
17562671 AAAAAATAGAGTTTTTGG-ACATTCGAGGGT
1 -AAAAATGGAATTTTTGGAAAATT-TAGGGT
* * *
17562701 -AGAATGGTAA-TTTT-GAAAGTTTTTGGGT
1 AAAAATGG-AATTTTTGGAAA-ATTTAGGGT
* * * *
17562729 CAAAAATGTAAATTTTGG-AAGTTTGGGGGT
1 -AAAAATGGAATTTTTGGAAAATTT-AGGGT
* ** * *
17562759 AAAAATGTAATTTTTGGAAGTTTTGGGGC
1 AAAAATGGAATTTTTGGAAAATTTAGGGT
* *
17562788 AAAAATGTAATTTTTGG-AAGTTTCAGGGT
1 AAAAATGGAATTTTTGGAAAATTT-AGGGT
*
17562817 CAAAAATGGAATTTTT-GAAAATTCGAGGGT
1 -AAAAATGGAATTTTTGGAAAATT-TAGGGT
*
17562847 AAAAATGTAATTTTTGGAA
1 AAAAATGGAATTTTTGGAA
17562866 GTGTTAAGGT
Statistics
Matches: 190, Mismatches: 41, Indels: 42
0.70 0.15 0.15
Matches are distributed among these distances:
27 6 0.03
28 23 0.12
29 89 0.47
30 65 0.34
31 7 0.04
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (29 bp):
AAAAATGGAATTTTTGGAAAATTTAGGGT
Found at i:17562629 original size:58 final size:56
Alignment explanation
Indices: 17562564--17562860 Score: 163
Period size: 58 Copynumber: 5.1 Consensus size: 56
17562554 GCAAAATGGT
*
17562564 AATTTTGGACTCTAGGGGGCAAAAATGGAATTTTTGGAAAATTTAGGGTTAAAAATGA
1 AATTTTGGACT-TAGGGGG-AAAAATGGAATTTTTGGAAAATTTAGGGTCAAAAATGA
* * * * * * *
17562622 AATTTTGGATGTTCGGGGGTAAAATGGAAATTTTTGGAAAAATCAGGATAAAAAATAGA
1 AATTTTGGA-CTTAGGGGGAAAAATGG-AATTTTTGGAAAATTTAGGGTCAAAAAT-GA
** * * * * * *
17562681 GTTTTTGGACATTCGAGGGTAGAATGGTAA-TTTT-GAAAGTTTTTGGGTCAAAAATGTA
1 AATTTTGGAC-TTAGGGGGAAAAATGG-AATTTTTGGAAA-ATTTAGGGTCAAAAATG-A
* * * * * *
17562739 AATTTTGGAAGTTTGGGGGTAAAAATGTAATTTTTGG-AAGTTTTGGGGCAAAAATGTA
1 AATTTTGG-ACTTAGGGGG-AAAAATGGAATTTTTGGAAAATTTAGGGTCAAAAATG-A
* * ** * *
17562797 ATTTTTGGAAGTTTCAGGGTCAAAAATGGAATTTTT-GAAAATTCGAGGGT-AAAAATGT
1 AATTTTGG-A-CTT-AGGGGGAAAAATGGAATTTTTGGAAAATT-TAGGGTCAAAAATGA
17562855 AATTTT
1 AATTTT
17562861 TGGAAGTGTT
Statistics
Matches: 184, Mismatches: 41, Indels: 28
0.73 0.16 0.11
Matches are distributed among these distances:
57 12 0.07
58 100 0.54
59 65 0.35
60 7 0.04
ACGTcount: A:0.36, C:0.04, G:0.26, T:0.34
Consensus pattern (56 bp):
AATTTTGGACTTAGGGGGAAAAATGGAATTTTTGGAAAATTTAGGGTCAAAAATGA
Found at i:17562707 original size:59 final size:57
Alignment explanation
Indices: 17562585--17562714 Score: 143
Period size: 59 Copynumber: 2.2 Consensus size: 57
17562575 CTAGGGGGCA
* * * * ** *
17562585 AAAATGGAATTTTTGGAAAATTTAGGGTTAAAAATGAAATTTTGGATGTTCGGGGGT
1 AAAATGGAATTTTTGGAAAAATCAGGATAAAAAATGAAATTTTGGACATTCGAGGGT
**
17562642 AAAATGGAAATTTTTGGAAAAATCAGGATAAAAAATAGAGTTTTTGGACATTCGAGGGT
1 AAAATGG-AATTTTTGGAAAAATCAGGATAAAAAAT-GAAATTTTGGACATTCGAGGGT
*
17562701 AGAATGGTAATTTT
1 AAAATGG-AATTTT
17562715 GAAAGTTTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
57 7 0.12
58 24 0.40
59 29 0.48
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.33
Consensus pattern (57 bp):
AAAATGGAATTTTTGGAAAAATCAGGATAAAAAATGAAATTTTGGACATTCGAGGGT
Found at i:17562809 original size:88 final size:88
Alignment explanation
Indices: 17562707--17562991 Score: 255
Period size: 88 Copynumber: 3.2 Consensus size: 88
17562697 GGGTAGAATG
* * *
17562707 GTAATTTT-GAAAGTTTTTGGGTCAAAAATGTAAATTTTGGAAGTTTGGGGGTAAAAATGTAATT
1 GTAATTTTGGACAGTTTTAGGGTCAAAAATGTAATTTTTGGAAGTTTGGGGGTAAAAATGTAATT
17562771 TTTGGAAGTTTTGGGGCAAAAAT
66 TTTGGAAGTTTTGGGGCAAAAAT
* * * * * *
17562794 GTAATTTTTGGA-AGTTTCAGGGTCAAAAATGGAATTTTTGAAAATTCGAGGGTAAAAATGTAAT
1 GTAA-TTTTGGACAGTTTTAGGGTCAAAAATGTAATTTTTGGAAGTTTGGGGGTAAAAATGTAAT
* *
17562858 TTTTGGAAGTGTTAAGGTG-AAAAAT
65 TTTTGGAAGT-TT-TGGGGCAAAAAT
* * ** * * * *
17562883 GCAATTTTGGACAATTCGA-GGTCAAAAATGT-ATTTTTGGAAGTTTTGAGGTTAAAATGTAAAT
1 GTAATTTTGGACAGTTTTAGGGTCAAAAATGTAATTTTTGGAAGTTTGGGGGTAAAAATGTAATT
*
17562946 TTGGTGAAG-TTTGAGGGTCAAAACA-
66 TTTG-GAAGTTTTG-GGG-CAAAA-AT
17562971 -TAATTTTTGGACAG-TTTAGGG
1 GTAA-TTTTGGACAGTTTTAGGG
17562992 ACCTCCAAGG
Statistics
Matches: 156, Mismatches: 30, Indels: 23
0.75 0.14 0.11
Matches are distributed among these distances:
85 1 0.01
86 4 0.03
87 35 0.22
88 95 0.61
89 18 0.12
90 3 0.02
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (88 bp):
GTAATTTTGGACAGTTTTAGGGTCAAAAATGTAATTTTTGGAAGTTTGGGGGTAAAAATGTAATT
TTTGGAAGTTTTGGGGCAAAAAT
Found at i:17562824 original size:59 final size:57
Alignment explanation
Indices: 17562729--17562991 Score: 232
Period size: 59 Copynumber: 4.5 Consensus size: 57
17562719 GTTTTTGGGT
* * * *
17562729 CAAAAATGTAAATTTTGGAAGTTTGGGGGTAAAAATGTAATTTTTGGAAGTTTTG-GGG
1 CAAAAATGTAATTTTTGGAAGTTT-AGGGTAAAAATGTAA-TTTTGGAAGATTCGAGGG
* * *
17562787 CAAAAATGTAATTTTTGGAAGTTTCAGGGTCAAAAATGGAATTTTTGAAAATTCGAGGG
1 CAAAAATGTAATTTTTGGAAGTTT-AGGGT-AAAAATGTAATTTTGGAAGATTCGAGGG
* * * *
17562846 TAAAAATGTAATTTTTGGAAGTGTTAAGGTGAAAAATGCAATTTTGGACA-ATTCGAGGT
1 CAAAAATGTAATTTTTGGAAGT-TTAGGGT-AAAAATGTAATTTTGGA-AGATTCGAGGG
* * * *
17562905 CAAAAATGT-ATTTTTGGAAGTTTTGAGGTTAAAATGTAAATTTGGTGAAG-TTTGAGGG
1 CAAAAATGTAATTTTTGGAAGTTTAG-GGTAAAAATGT-AATTTTG-GAAGATTCGAGGG
17562963 TCAAAACA--TAATTTTTGGACAGTTTAGGG
1 -CAAAA-ATGTAATTTTTGGA-AGTTTAGGG
17562992 ACCTCCAAGG
Statistics
Matches: 170, Mismatches: 23, Indels: 23
0.79 0.11 0.11
Matches are distributed among these distances:
57 8 0.05
58 66 0.39
59 86 0.51
60 10 0.06
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (57 bp):
CAAAAATGTAATTTTTGGAAGTTTAGGGTAAAAATGTAATTTTGGAAGATTCGAGGG
Found at i:17562880 original size:29 final size:28
Alignment explanation
Indices: 17562707--17562987 Score: 208
Period size: 29 Copynumber: 9.6 Consensus size: 28
17562697 GGGTAGAATG
* *
17562707 GTAA-TTTTGAAAGTTTTTGGGTCAAAAAT
1 GTAATTTTTGGAAG-TTTGGGGT-AAAAAT
*
17562736 GTAAATTTTGGAAGTTTGGGGGTAAAAAT
1 GTAATTTTTGGAAGTTT-GGGGTAAAAAT
*
17562765 GTAATTTTTGGAAGTTTTGGGGCAAAAAT
1 GTAATTTTTGGAAG-TTTGGGGTAAAAAT
*
17562794 GTAATTTTTGGAAGTTTCAGGGTCAAAAAT
1 GTAATTTTTGGAAGTTT-GGGGT-AAAAAT
* * * *
17562824 GGAATTTTTGAAAATTCGAGGGTAAAAAT
1 GTAATTTTTGGAAGTTTG-GGGTAAAAAT
**
17562853 GTAATTTTTGGAAGTGTTAAGGTGAAAAAT
1 GTAATTTTTGGAAGT-TTGGGGT-AAAAAT
* * * *
17562883 GCAA-TTTTGGACAATTCGAGGTCAAAAAT
1 GTAATTTTTGGA-AGTTTGGGGT-AAAAAT
* *
17562912 GT-ATTTTTGGAAGTTTTGAGGTTAAAAT
1 GTAATTTTTGGAAG-TTTGGGGTAAAAAT
* * * *
17562940 GTAAATTTGGTGAAGTTTGAGGGTCAAAAC
1 GTAATTTTTG-GAAGTTTG-GGGTAAAAAT
*
17562970 ATAATTTTTGGACAGTTT
1 GTAATTTTTGGA-AGTTT
17562988 AGGGACCTCC
Statistics
Matches: 203, Mismatches: 34, Indels: 29
0.76 0.13 0.11
Matches are distributed among these distances:
28 12 0.06
29 118 0.58
30 73 0.36
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (28 bp):
GTAATTTTTGGAAGTTTGGGGTAAAAAT
Found at i:17564194 original size:10 final size:10
Alignment explanation
Indices: 17564179--17564204 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
17564169 ATATTATTTA
17564179 TTAATAATAT
1 TTAATAATAT
17564189 TTAATAATAT
1 TTAATAATAT
17564199 TTAATA
1 TTAATA
17564205 GCTTTATTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TTAATAATAT
Found at i:17581164 original size:52 final size:52
Alignment explanation
Indices: 17581087--17581272 Score: 277
Period size: 52 Copynumber: 3.6 Consensus size: 52
17581077 TAAATGAAAA
* *
17581087 AGGTCCGATGA-TATGTGTCATCGTGAGTATATGAATCGTTTATGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
*
17581138 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCATTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * ** *
17581190 AGGTCCAATGACTATGTGTCATCATGAGTATATGTTTCCTTTACGGATTAAG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
17581242 AGGTCC-ATTGACTATGTGTCATCGTGAGTAT
1 AGGTCCGA-TGACTATGTGTCATCGTGAGTAT
17581273 TAAATGAAAT
Statistics
Matches: 123, Mismatches: 10, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
51 12 0.10
52 111 0.90
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
Found at i:17582037 original size:21 final size:21
Alignment explanation
Indices: 17582005--17582081 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
17581995 GGAGTTTTTG
*
17582005 GTATCAGTAGAAGTAAGACTT
1 GTATCGGTAGAAGTAAGACTT
*
17582026 GTTTCGGTAGAAG--AGTAACTT
1 GTATCGGTAGAAGTAAG--ACTT
* **
17582047 GTATCGGTAGAACTATCACTT
1 GTATCGGTAGAAGTAAGACTT
17582068 GTATCGGTAGAAGT
1 GTATCGGTAGAAGT
17582082 CTGCGCTATT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
19 2 0.04
21 43 0.96
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (21 bp):
GTATCGGTAGAAGTAAGACTT
Found at i:17582600 original size:16 final size:17
Alignment explanation
Indices: 17582559--17582594 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
17582549 GAGTTAGAAC
17582559 ATTTAGAATTATATTTA
1 ATTTAGAATTATATTTA
17582576 A-TTAGAATTA-ATTTA
1 ATTTAGAATTATATTTA
17582591 ATTT
1 ATTT
17582595 TAAATTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 6 0.33
16 11 0.61
17 1 0.06
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (17 bp):
ATTTAGAATTATATTTA
Found at i:17589340 original size:6 final size:6
Alignment explanation
Indices: 17589329--17589365 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
17589319 CAAAGGGGTT
17589329 GAAATG GAAATG GAAATG GAAATG GAAATG GAAATG G
1 GAAATG GAAATG GAAATG GAAATG GAAATG GAAATG G
17589366 TAATCGAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.35, T:0.16
Consensus pattern (6 bp):
GAAATG
Found at i:17593736 original size:44 final size:44
Alignment explanation
Indices: 17593686--17593774 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
17593676 GACATGACAC
*
17593686 ACCAATCAAGAGGTCTTTAGAAGGTTGTAATCGGGCCAAGGTTA
1 ACCAATCAAGAGGTCTTTACAAGGTTGTAATCGGGCCAAGGTTA
17593730 ACCAATCAAGAGGTCTTTACAAGGTTGTAATCGGGCCAAGGTTA
1 ACCAATCAAGAGGTCTTTACAAGGTTGTAATCGGGCCAAGGTTA
17593774 A
1 A
17593775 GGGTATGAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.25
Consensus pattern (44 bp):
ACCAATCAAGAGGTCTTTACAAGGTTGTAATCGGGCCAAGGTTA
Found at i:17593975 original size:16 final size:16
Alignment explanation
Indices: 17593956--17593990 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
17593946 CATTTTTATC
17593956 TTTTTCCAATTTTCTT
1 TTTTTCCAATTTTCTT
**
17593972 TTTTTCCTTTTTTCTT
1 TTTTTCCAATTTTCTT
17593988 TTT
1 TTT
17593991 CTAAATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTCCAATTTTCTT
Found at i:17594929 original size:7 final size:7
Alignment explanation
Indices: 17594917--17594999 Score: 52
Period size: 7 Copynumber: 12.1 Consensus size: 7
17594907 ATAATAAAAT
17594917 AAAATAA
1 AAAATAA
17594924 AAAATAA
1 AAAATAA
17594931 AAAAT--
1 AAAATAA
17594936 AAAAT-A
1 AAAATAA
*
17594942 AAACTAA
1 AAAATAA
*
17594949 AAACTAA
1 AAAATAA
*
17594956 AAAAT-G
1 AAAATAA
17594962 AAAATGAA
1 AAAAT-AA
*
17594970 AATAGAAAGA
1 AA-A-ATA-A
17594980 AAAAT-A
1 AAAATAA
17594986 AAAAT-A
1 AAAATAA
17594992 AAAATAA
1 AAAATAA
17594999 A
1 A
17595000 TGTACAAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 5 0.08
6 21 0.34
7 26 0.42
8 3 0.05
9 3 0.05
10 4 0.06
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.14
Consensus pattern (7 bp):
AAAATAA
Found at i:17594932 original size:6 final size:6
Alignment explanation
Indices: 17594912--17594999 Score: 81
Period size: 6 Copynumber: 14.3 Consensus size: 6
17594902 AATGCATAAT
* *
17594912 AAAAT- AAAATAA AAAATA AAAA-A TAAAATA AAACTA AAAACTAA AAAATG
1 AAAATA AAAAT-A AAAATA AAAATA -AAAATA AAAATA AAAA-T-A AAAATA
* * *
17594962 AAAATG AAAATA GAAAGA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AA
17595000 TGTACAAATT
Statistics
Matches: 69, Mismatches: 8, Indels: 11
0.78 0.09 0.12
Matches are distributed among these distances:
5 6 0.09
6 50 0.72
7 8 0.12
8 5 0.07
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:17597075 original size:5 final size:6
Alignment explanation
Indices: 17597031--17597083 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
17597021 AAAAGAAACT
* * *
17597031 ATAAAA ATAAAAA ATTAAA TTAAAA ACAAAA ATATGAAA ATAAAA ATAAAA
1 ATAAAA AT-AAAA ATAAAA ATAAAA ATAAAA ATA--AAA ATAAAA ATAAAA
17597082 AT
1 AT
17597084 GGCTAAATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
6 26 0.68
7 6 0.16
8 6 0.16
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (6 bp):
ATAAAA
Found at i:17597083 original size:20 final size:20
Alignment explanation
Indices: 17597031--17597083 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
17597021 AAAAGAAACT
*
17597031 ATAAAAATAAAAA-ATTAAA
1 ATAAAAATAAAAATATGAAA
* *
17597050 TTAAAAACAAAAATATGAAA
1 ATAAAAATAAAAATATGAAA
17597070 ATAAAAATAAAAAT
1 ATAAAAATAAAAAT
17597084 GGCTAAATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (20 bp):
ATAAAAATAAAAATATGAAA
Found at i:17599354 original size:19 final size:19
Alignment explanation
Indices: 17599320--17599360 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
17599310 CTTTTCCTTC
17599320 TTTTTTCCAATTTTTTC-T
1 TTTTTTCCAATTTTTTCGT
*
17599338 TTTTTTTCAATTTTTTTCGT
1 TTTTTTCCAA-TTTTTTCGT
17599358 TTT
1 TTT
17599361 CAAAATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 7 0.35
20 4 0.20
ACGTcount: A:0.10, C:0.12, G:0.02, T:0.76
Consensus pattern (19 bp):
TTTTTTCCAATTTTTTCGT
Found at i:17602570 original size:24 final size:24
Alignment explanation
Indices: 17602429--17602562 Score: 214
Period size: 24 Copynumber: 5.6 Consensus size: 24
17602419 TGTTATTCTG
17602429 ATTCTGGGCTCGTAAGAGCTAACC
1 ATTCTGGGCTCGTAAGAGCTAACC
*
17602453 ATTCTAGGCTCGTAAGAGCTAACC
1 ATTCTGGGCTCGTAAGAGCTAACC
*
17602477 ATTCTGGGCTCGTAAGAGCTAATC
1 ATTCTGGGCTCGTAAGAGCTAACC
*
17602501 ATTTTGGGCTCGTAAGAGCTAACC
1 ATTCTGGGCTCGTAAGAGCTAACC
* * *
17602525 GTTCTGAGCTTGTAAGAGCTAACC
1 ATTCTGGGCTCGTAAGAGCTAACC
17602549 ATTCTGGGCTCGTA
1 ATTCTGGGCTCGTA
17602563 TGGGCTAAAT
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 98 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (24 bp):
ATTCTGGGCTCGTAAGAGCTAACC
Found at i:17606651 original size:100 final size:100
Alignment explanation
Indices: 17606532--17606731 Score: 337
Period size: 100 Copynumber: 2.0 Consensus size: 100
17606522 ACCTAGACCA
*
17606532 AAATTCAGTATTCATTCATTTAATTCACCTCATAACCAACATTTAAATTTCCACTAATGGATTAA
1 AAATTCAGTATTCATTCATTTAATTCACCTCATAACCAACATCTAAATTTCCACTAATGGATTAA
17606597 AACCAATCATCAAAATTACTATCAATTTATGAAAC
66 AACCAATCATCAAAATTACTATCAATTTATGAAAC
* * * *
17606632 AAATTTAGTATTCATTCATTTAATTCACCTCATAACTAGCATCTAAATTTCTACTAATGGATTAA
1 AAATTCAGTATTCATTCATTTAATTCACCTCATAACCAACATCTAAATTTCCACTAATGGATTAA
* *
17606697 AACCAATCGTCGAAATTACTATCAATTTATGAAAC
66 AACCAATCATCAAAATTACTATCAATTTATGAAAC
17606732 TAACTAGTTA
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 93 1.00
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.35
Consensus pattern (100 bp):
AAATTCAGTATTCATTCATTTAATTCACCTCATAACCAACATCTAAATTTCCACTAATGGATTAA
AACCAATCATCAAAATTACTATCAATTTATGAAAC
Found at i:17613311 original size:26 final size:26
Alignment explanation
Indices: 17613281--17613363 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
17613271 ATAATAGATC
17613281 TTTAAAACCATGCAAAGAAAACAAAT
1 TTTAAAACCATGCAAAGAAAACAAAT
* * * ** * * *
17613307 TTT-AAATCTTTC-CTGATAATAGAT
1 TTTAAAACCATGCAAAGAAAACAAAT
17613331 CTTTAAAACCATGCAAAGAAAACAAAT
1 -TTTAAAACCATGCAAAGAAAACAAAT
17613358 TTTAAA
1 TTTAAA
17613364 TCTTTCTAAT
Statistics
Matches: 38, Mismatches: 16, Indels: 6
0.63 0.27 0.10
Matches are distributed among these distances:
24 7 0.18
25 9 0.24
26 15 0.39
27 7 0.18
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.29
Consensus pattern (26 bp):
TTTAAAACCATGCAAAGAAAACAAAT
Found at i:17613325 original size:51 final size:51
Alignment explanation
Indices: 17613267--17613369 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
17613257 AAATCTAATA
17613267 CCTGATAATAGATCTTTAAAACCATGCAAAGAAAACAAATTTTAAATCTTT
1 CCTGATAATAGATCTTTAAAACCATGCAAAGAAAACAAATTTTAAATCTTT
17613318 CCTGATAATAGATCTTTAAAACCATGCAAAGAAAACAAATTTTAAATCTTT
1 CCTGATAATAGATCTTTAAAACCATGCAAAGAAAACAAATTTTAAATCTTT
17613369 C
1 C
17613370 TAATATGATG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.31
Consensus pattern (51 bp):
CCTGATAATAGATCTTTAAAACCATGCAAAGAAAACAAATTTTAAATCTTT
Found at i:17619740 original size:24 final size:23
Alignment explanation
Indices: 17619708--17619754 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
17619698 TTCAAAGAAA
* * *
17619708 ATTTGGGGATTAGATCTTTTTTTG
1 ATTTAGGGAATAGAT-TATTTTTG
17619732 ATTTAGGGAATAGATTATTTTTG
1 ATTTAGGGAATAGATTATTTTTG
17619755 TAGGGTGTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.23, C:0.02, G:0.23, T:0.51
Consensus pattern (23 bp):
ATTTAGGGAATAGATTATTTTTG
Found at i:17622468 original size:23 final size:24
Alignment explanation
Indices: 17622407--17622468 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 24
17622397 TAGACTAATA
* * *
17622407 AGAGTTTGACTCAAATAAATAAAT
1 AGAGTTTAACTCAAAAAAATAAAC
* *
17622431 AGAG-TTAATTGAAAAAAATAAAC
1 AGAGTTTAACTCAAAAAAATAAAC
17622454 AGAGTTTAACT-AAAA
1 AGAGTTTAACTCAAAA
17622469 GATTATTTCT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
23 22 0.71
24 9 0.29
ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26
Consensus pattern (24 bp):
AGAGTTTAACTCAAAAAAATAAAC
Found at i:17628893 original size:15 final size:16
Alignment explanation
Indices: 17628875--17628909 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
17628865 CTAAAGTATT
17628875 CTAAGCTAAATT-AAA
1 CTAAGCTAAATTAAAA
*
17628890 CTAAGTTAAATTAAAA
1 CTAAGCTAAATTAAAA
17628906 CTAA
1 CTAA
17628910 ATTAAATTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (16 bp):
CTAAGCTAAATTAAAA
Found at i:17628908 original size:16 final size:15
Alignment explanation
Indices: 17628875--17628917 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
17628865 CTAAAGTATT
*
17628875 CTAAGCTAAATTAAA
1 CTAAGTTAAATTAAA
17628890 CTAAGTTAAATTAAAA
1 CTAAGTTAAATT-AAA
*
17628906 CTAAATTAAATT
1 CTAAGTTAAATT
17628918 CCTATGCACG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.53, C:0.09, G:0.05, T:0.33
Consensus pattern (15 bp):
CTAAGTTAAATTAAA
Found at i:17632442 original size:229 final size:229
Alignment explanation
Indices: 17632041--17632497 Score: 914
Period size: 229 Copynumber: 2.0 Consensus size: 229
17632031 TGCTTAATCT
17632041 TCTAAAGAAGTTGAGGGTTAAAATTGCGATGGTATTGGAGAATACACGGCCTTGCATAACTTGCA
1 TCTAAAGAAGTTGAGGGTTAAAATTGCGATGGTATTGGAGAATACACGGCCTTGCATAACTTGCA
17632106 GGATTTTTGTGATTAAATTGTTTCAATATAGGTGTATGTTGTTACTTCACTTGATCCTTTACTTT
66 GGATTTTTGTGATTAAATTGTTTCAATATAGGTGTATGTTGTTACTTCACTTGATCCTTTACTTT
17632171 TGAATTTAATTTAGTCGGTCATATTGGCATAGGTGTATGTTCAAGAGATAAATTTATTTCATAAA
131 TGAATTTAATTTAGTCGGTCATATTGGCATAGGTGTATGTTCAAGAGATAAATTTATTTCATAAA
17632236 TTATGTATGTGCCATAACACATTTACTTATCAAA
196 TTATGTATGTGCCATAACACATTTACTTATCAAA
17632270 TCTAAAGAAGTTGAGGGTTAAAATTGCGATGGTATTGGAGAATACACGGCCTTGCATAACTTGCA
1 TCTAAAGAAGTTGAGGGTTAAAATTGCGATGGTATTGGAGAATACACGGCCTTGCATAACTTGCA
17632335 GGATTTTTGTGATTAAATTGTTTCAATATAGGTGTATGTTGTTACTTCACTTGATCCTTTACTTT
66 GGATTTTTGTGATTAAATTGTTTCAATATAGGTGTATGTTGTTACTTCACTTGATCCTTTACTTT
17632400 TGAATTTAATTTAGTCGGTCATATTGGCATAGGTGTATGTTCAAGAGATAAATTTATTTCATAAA
131 TGAATTTAATTTAGTCGGTCATATTGGCATAGGTGTATGTTCAAGAGATAAATTTATTTCATAAA
17632465 TTATGTATGTGCCATAACACATTTACTTATCAA
196 TTATGTATGTGCCATAACACATTTACTTATCAA
17632498 CGATTAGTTC
Statistics
Matches: 228, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
229 228 1.00
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (229 bp):
TCTAAAGAAGTTGAGGGTTAAAATTGCGATGGTATTGGAGAATACACGGCCTTGCATAACTTGCA
GGATTTTTGTGATTAAATTGTTTCAATATAGGTGTATGTTGTTACTTCACTTGATCCTTTACTTT
TGAATTTAATTTAGTCGGTCATATTGGCATAGGTGTATGTTCAAGAGATAAATTTATTTCATAAA
TTATGTATGTGCCATAACACATTTACTTATCAAA
Found at i:17637233 original size:24 final size:24
Alignment explanation
Indices: 17637173--17637225 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
17637163 TGAGAAATAA
* *
17637173 TCTTCCAATTAAACTCTGTTTATT
1 TCTTTCAATTAAAATCTGTTTATT
*
17637197 TGTTTCAATTAAAATCTGTTTATT
1 TCTTTCAATTAAAATCTGTTTATT
17637221 TCTTT
1 TCTTT
17637226 TAGTTAAACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.06, T:0.55
Consensus pattern (24 bp):
TCTTTCAATTAAAATCTGTTTATT
Done.