Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 60 of 135
Found at i:17638544 original size:26 final size:26
Alignment explanation
Indices: 17638504--17638605 Score: 98
Period size: 26 Copynumber: 3.9 Consensus size: 26
17638494 TGGGCGTAAT
*
17638504 TCTAGACATGCTCATACAGCGACAAC
1 TCTAGACATGCTCATGCAGCGACAAC
* * * * *
17638530 TCTAGACATGTTCATGCAACCATAAT
1 TCTAGACATGCTCATGCAGCGACAAC
* * *
17638556 TCTGGACAAGTTTC-TGCAGCGACAAC
1 TCTAGACATG-CTCATGCAGCGACAAC
*
17638582 TCTGGACATGCTCATGCAGCGACA
1 TCTAGACATGCTCATGCAGCGACA
17638606 TTAGTTGTAA
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
25 2 0.03
26 55 0.92
27 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (26 bp):
TCTAGACATGCTCATGCAGCGACAAC
Found at i:17642944 original size:26 final size:26
Alignment explanation
Indices: 17642908--17643011 Score: 102
Period size: 26 Copynumber: 4.0 Consensus size: 26
17642898 TCTAGTCACT
*
17642908 ATTCTGGACATGGTCATACGGCGACA
1 ATTCTGGACATGGTCATACAGCGACA
* * *
17642934 ATTCTGGACATGTTCATGCAGCGATA
1 ATTCTGGACATGGTCATACAGCGACA
* * *
17642960 ATTCTGGACAAGTTTC-TGCAGCGACA
1 ATTCTGGACATG-GTCATACAGCGACA
* * *
17642986 ATTCTAGACATGCTCATGCAGCGACA
1 ATTCTGGACATGGTCATACAGCGACA
17643012 TTAGTAGTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
25 2 0.03
26 62 0.93
27 3 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
ATTCTGGACATGGTCATACAGCGACA
Found at i:17643951 original size:17 final size:17
Alignment explanation
Indices: 17643929--17643962 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
17643919 CAGTAACACT
17643929 AAAATGCAATGACAATG
1 AAAATGCAATGACAATG
17643946 AAAATGCAATGACAATG
1 AAAATGCAATGACAATG
17643963 CTTACTAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.18
Consensus pattern (17 bp):
AAAATGCAATGACAATG
Found at i:17660475 original size:33 final size:33
Alignment explanation
Indices: 17660434--17660496 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
17660424 AACCTAAGAG
*
17660434 AATAAATTCTTTATTAACTCTATCACTATGTCA
1 AATAAATTCTTTATTAACTATATCACTATGTCA
17660467 AATAAATTCTTTATTAACTATATCACTATG
1 AATAAATTCTTTATTAACTATATCACTATG
17660497 CCACCTACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (33 bp):
AATAAATTCTTTATTAACTATATCACTATGTCA
Found at i:17670153 original size:685 final size:685
Alignment explanation
Indices: 17668843--17670212 Score: 2695
Period size: 685 Copynumber: 2.0 Consensus size: 685
17668833 GAATAAAACC
17668843 TATTAATGAAAGCAAAAGTGTAACAAAAATGCTCTGTAAGTGAAATAATGAAATAAAAGTATAAA
1 TATTAATGAAAGCAAAAGTGTAACAAAAATGCTCTGTAAGTGAAATAATGAAATAAAAGTATAAA
17668908 AGCGTGAGATCCTTTGAGTACTAAGTCGCCTAAGTCCAAGATATATCTGTAAGTGAAACTGAGGG
66 AGCGTGAGATCCTTTGAGTACTAAGTCGCCTAAGTCCAAGATATATCTGTAAGTGAAACTGAGGG
*
17668973 GGAGTGAGCTAAAATGCCCATTATGTCTCTAAAGTACAAGCAGCCACAAACACAACATCACATTA
131 GGAATGAGCTAAAATGCCCATTATGTCTCTAAAGTACAAGCAGCCACAAACACAACATCACATTA
17669038 ATTTAACAAAAACATTTTAGAATAAGCATACAATACATCTCAACACAAATGCAATAAAGTCACAA
196 ATTTAACAAAAACATTTTAGAATAAGCATACAATACATCTCAACACAAATGCAATAAAGTCACAA
*
17669103 GCACAATGCAATGCACCCAATCCTCCAGCACACCAACACAGTGGAGTGGTTCCTTAGAACCCCTT
261 GCACAATGCAATGCACCCAATCCTCCAGCACACCAACACAGTGGAGTGGTTCCTTAGAAACCCTT
*
17669168 CCCAACCAAATGTCACCAATTACAGTGTGGTTTTACTATCAACCGTTTGAAGGGGTGATAACCAC
326 CCCAACCAAACGTCACCAATTACAGTGTGGTTTTACTATCAACCGTTTGAAGGGGTGATAACCAC
17669233 GTCTTCCACCATACCACCCAACACATGTACACACAATGGTATGATGTCATAATAATCTTAGTCTT
391 GTCTTCCACCATACCACCCAACACATGTACACACAATGGTATGATGTCATAATAATCTTAGTCTT
17669298 AACACAATCTCATGATATTAAATTAGAATTCAAAAATCCGTACACATGATAATCAAAGTATCCAC
456 AACACAATCTCATGATATTAAATTAGAATTCAAAAATCCGTACACATGATAATCAAAGTATCCAC
17669363 AATCTAAAAGATATGAATGGAAAATTAACATGCGATACACAACATCGAGTAATAATCTCATAGAT
521 AATCTAAAAGATATGAATGGAAAATTAACATGCGATACACAACATCGAGTAATAATCTCATAGAT
17669428 ATCTTAACACAAGATAACATCACACAACAATCATATAACACAGATAAAACACACATCAAATATGT
586 ATCTTAACACAAGATAACATCACACAACAATCATATAACACAGATAAAACACACATCAAATATGT
17669493 AGCACGGATAGAAACATACCTCAAGCAACAAGGAG
651 AGCACGGATAGAAACATACCTCAAGCAACAAGGAG
17669528 TATTAATGAAAGCAAAAGTGTAACAAAAATGCTCTGTAAGTGAAATAATGAAATAAAAGTATAAA
1 TATTAATGAAAGCAAAAGTGTAACAAAAATGCTCTGTAAGTGAAATAATGAAATAAAAGTATAAA
17669593 AGCGTGAGATCCTTTGAGTACTAAGTCGCCTAAGTCCAAGATATATCTGTAAGTGAAACTGAGGG
66 AGCGTGAGATCCTTTGAGTACTAAGTCGCCTAAGTCCAAGATATATCTGTAAGTGAAACTGAGGG
17669658 GGAATGAGCTAAAATGCCCATTATGTCTCTAAAGTACAAGCAGCCACAAACACAACATCACATTA
131 GGAATGAGCTAAAATGCCCATTATGTCTCTAAAGTACAAGCAGCCACAAACACAACATCACATTA
17669723 ATTTAACAAAAACATTTTAGAATAAGCATACAATACATCTCAACACAAATGCAATAAAGTCACAA
196 ATTTAACAAAAACATTTTAGAATAAGCATACAATACATCTCAACACAAATGCAATAAAGTCACAA
17669788 GCACAATGCAATGCACCCAATCCTCCAGCACACCAACACAGTGGAGTGGTTCCTTAGAAACCCTT
261 GCACAATGCAATGCACCCAATCCTCCAGCACACCAACACAGTGGAGTGGTTCCTTAGAAACCCTT
*
17669853 CCCAACCAAACGTCACCAATTACAGTGTGGTTTTACTATCAACCGTTTGAAGGGGTGATAATCAC
326 CCCAACCAAACGTCACCAATTACAGTGTGGTTTTACTATCAACCGTTTGAAGGGGTGATAACCAC
17669918 GTCTTCCACCATACCACCCAACACATGTACACACAATGGTATGATGTCATAATAATCTTAGTCTT
391 GTCTTCCACCATACCACCCAACACATGTACACACAATGGTATGATGTCATAATAATCTTAGTCTT
17669983 AACACAATCTCATGATATTAAATTAGAATTCAAAAATCCGTACACATGATAATCAAAGTATCCAC
456 AACACAATCTCATGATATTAAATTAGAATTCAAAAATCCGTACACATGATAATCAAAGTATCCAC
17670048 AATCTAAAAGATATGAATGGAAAATTAACATGCGATACACAACATCGAGTAATAATCTCATAGAT
521 AATCTAAAAGATATGAATGGAAAATTAACATGCGATACACAACATCGAGTAATAATCTCATAGAT
17670113 ATCTTAACACAAGATAACATCACACAACAATCATATAACACAGATAAAACACACATCAAATATGT
586 ATCTTAACACAAGATAACATCACACAACAATCATATAACACAGATAAAACACACATCAAATATGT
*
17670178 AGCACGGATAGAAACATACCTCAAGCAGCAAGGAG
651 AGCACGGATAGAAACATACCTCAAGCAACAAGGAG
17670213 CTCTAACATC
Statistics
Matches: 680, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
685 680 1.00
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (685 bp):
TATTAATGAAAGCAAAAGTGTAACAAAAATGCTCTGTAAGTGAAATAATGAAATAAAAGTATAAA
AGCGTGAGATCCTTTGAGTACTAAGTCGCCTAAGTCCAAGATATATCTGTAAGTGAAACTGAGGG
GGAATGAGCTAAAATGCCCATTATGTCTCTAAAGTACAAGCAGCCACAAACACAACATCACATTA
ATTTAACAAAAACATTTTAGAATAAGCATACAATACATCTCAACACAAATGCAATAAAGTCACAA
GCACAATGCAATGCACCCAATCCTCCAGCACACCAACACAGTGGAGTGGTTCCTTAGAAACCCTT
CCCAACCAAACGTCACCAATTACAGTGTGGTTTTACTATCAACCGTTTGAAGGGGTGATAACCAC
GTCTTCCACCATACCACCCAACACATGTACACACAATGGTATGATGTCATAATAATCTTAGTCTT
AACACAATCTCATGATATTAAATTAGAATTCAAAAATCCGTACACATGATAATCAAAGTATCCAC
AATCTAAAAGATATGAATGGAAAATTAACATGCGATACACAACATCGAGTAATAATCTCATAGAT
ATCTTAACACAAGATAACATCACACAACAATCATATAACACAGATAAAACACACATCAAATATGT
AGCACGGATAGAAACATACCTCAAGCAACAAGGAG
Found at i:17671347 original size:24 final size:24
Alignment explanation
Indices: 17671319--17671381 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
17671309 AGAAATAATC
*
17671319 TTTCAGTTAAACTCTGTTTATTTG
1 TTTCAGTTAAACTCTATTTATTTG
*
17671343 TTTCAATTAAACTCTATTTATTTG
1 TTTCAGTTAAACTCTATTTATTTG
* *
17671367 TTTGAGTCAAACTCT
1 TTTCAGTTAAACTCT
17671382 TATTAGTCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.25, C:0.14, G:0.10, T:0.51
Consensus pattern (24 bp):
TTTCAGTTAAACTCTATTTATTTG
Found at i:17693600 original size:43 final size:43
Alignment explanation
Indices: 17693542--17693646 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 43
17693532 AGGCTCCCTT
* * * *
17693542 ACATCTAGGGAACCAAGGTGCCGATGGTGTCTGATGCTCCCGC
1 ACATCCAGGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCAC
* *
17693585 ACATCCAGGGCACCAAGGTGTCGATGGTGTCCGATGCTCTCAC
1 ACATCCAGGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCAC
* *
17693628 ACATCCAAGGCAACAAGGT
1 ACATCCAGGGCACCAAGGT
17693647 ACCGCACCAC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (43 bp):
ACATCCAGGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCAC
Found at i:17693807 original size:86 final size:86
Alignment explanation
Indices: 17693648--17694255 Score: 557
Period size: 86 Copynumber: 7.1 Consensus size: 86
17693638 CAACAAGGTA
* ** *
17693648 CCGCACCACCATCGGCCTAAGTTACCAATGGTGTCTAATGCTCTCGCACATCCG-AGGCACTAAG
1 CCGCACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCTCGCACAT-CGAAGGCACCAAG
* *
17693712 GT-ACTGATACTTCCCGACGGTC
65 GTGTC-GATACTTCCCGATGGTC
* * * * *
17693734 TCGCACCATCACCGGCCTAAGTTACCGATGGTGTTCGATGCTCTCGCACATCGAAGGCACCAAAG
1 CCGCACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCTCGCACATCGAAGGCACCAAGG
17693799 TGTCGATACTTCCCGATGGTC
66 TGTCGATACTTCCCGATGGTC
* ** * * * * *
17693820 TCGCACCACTGTCGGCCTTAGTTACCGATGGTGTCTGATACTCTCGCACATCGAAGGCACTATGG
1 CCGCACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCTCGCACATCGAAGGCACCAAGG
** *
17693885 TACCGATACTTCCCAATGGTC
66 TGTCGATACTTCCCGATGGTC
* * * * * *
17693906 CCGCACCACCATCGGCCTTAGTTGCCAAAGGTGCCCGGTGCTCTCGCACATTCG-AGGCACCAAG
1 CCGCACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCTCGCACA-TCGAAGGCACCAAG
* * ** *
17693970 GTATTGATGGTGT-CCGATGCTC
65 GTGTCGATACT-TCCCGATGGTC
* * * * * *
17693992 CCGTA-CATCCA-AGGCACCAAGGTACCGATGGTGTCCGAGGCTCCCGCACATCCG-AGGCACCA
1 CCGCACCA-CCATCGGC-CTAAGTTACCGATGGTGTCCGATGCTCTCGCACAT-CGAAGGCACCA
* *
17694054 AGGTGCCGATACTTCCCAATGGTC
63 AGGTGTCGATACTTCCCGATGGTC
** * * *
17694078 CCATACCACCATTGACCTAAGTTACCGATGGTGTCCGATGCT-TCCACACATCGAAGGCACCAAG
1 CCGCACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCT-CGCACATCGAAGGCACCAAG
* **
17694142 GTGTCGATACCTCCCGATTATC
65 GTGTCGATACTTCCCGATGGTC
* * * * * *
17694164 CCGCACCATCATCGGCCTTAGTTACCGATGGTGTCCGATGATCCCGCACATCAAAGGCACCAGGG
1 CCGCACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCTCGCACATCGAAGGCACCAAGG
** * *
17694229 TACCGAAACTTCCCAATGGTC
66 TGTCGATACTTCCCGATGGTC
17694250 CCGCAC
1 CCGCAC
17694256 ATCCGAGGCA
Statistics
Matches: 416, Mismatches: 93, Indels: 26
0.78 0.17 0.05
Matches are distributed among these distances:
85 11 0.03
86 396 0.95
87 9 0.02
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.22
Consensus pattern (86 bp):
CCGCACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCTCGCACATCGAAGGCACCAAGG
TGTCGATACTTCCCGATGGTC
Found at i:17694272 original size:215 final size:215
Alignment explanation
Indices: 17693975--17694470 Score: 601
Period size: 215 Copynumber: 2.3 Consensus size: 215
17693965 CCAAGGTATT
* * * *
17693975 GATGGTGTCCGATGCTCCCGTACATCCAAGGCACCAAGGTACCGATGGTGT-CCGA-GGCTCCCG
1 GATGGTGTCCGATGCTCCCGCACATCAAAGGCACCAAGGTACCGATGCT-TCCCAATGG-TCCCG
* * *
17694038 CACATCCGAGGCACCAAGGTGCCGAT-ACTTCCCAATGGTCCCATACCACCATTGACCTAAGTTA
64 CACATCCGAGGCACCAAGGTGCCGATGA-TTCCCAATGGTCCCACACCACCATCGACCTAAGATA
* * *
17694102 CCGATGGTGTCCGATGCT-TCCACACATC-GAAGGCACCAAGGT-GTCGATACCTCCCGA-TTAT
128 CCGATAGTGTCCGATGCTCT-CACACATCTG-AGGCACCAAGGTACT-GATACCTCCCGACGT-T
* * * *
17694163 CCCGCACCATCATCGGCCTTAGTTACC
189 CCCACACCACCATCGCCCTTAATTACC
* * **
17694190 GATGGTGTCCGATGATCCCGCACATCAAAGGCACCAGGGTACCGAAACTTCCCAATGGTCCCGCA
1 GATGGTGTCCGATGCTCCCGCACATCAAAGGCACCAAGGTACCGATGCTTCCCAATGGTCCCGCA
* * *
17694255 CATCCGAGGCACCAAGGTGCCGATGATTCTCGATGGTCCCGCACCACCATCGACCTAAGATACCG
66 CATCCGAGGCACCAAGGTGCCGATGATTCCCAATGGTCCCACACCACCATCGACCTAAGATACCG
* * * * * *
17694320 ATAGTGTCTGATGCTCTCGCACATCTGAGGCACTAAGGTACTGATGCTTTCCGACGTTCCCACAC
131 ATAGTGTCCGATGCTCTCACACATCTGAGGCACCAAGGTACTGATACCTCCCGACGTTCCCACAC
17694385 CACCATCGCCCTTAATTACC
196 CACCATCGCCCTTAATTACC
* * * *
17694405 GATGGTGTTCGATGCTCCCGCACATCGAAGGCACCATGGTACCGATGCTTCCCAATGCTCCCGCA
1 GATGGTGTCCGATGCTCCCGCACATCAAAGGCACCAAGGTACCGATGCTTCCCAATGGTCCCGCA
17694470 C
66 C
17694471 CACCATCGGC
Statistics
Matches: 240, Mismatches: 34, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 1 0.00
215 232 0.97
216 7 0.03
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.21
Consensus pattern (215 bp):
GATGGTGTCCGATGCTCCCGCACATCAAAGGCACCAAGGTACCGATGCTTCCCAATGGTCCCGCA
CATCCGAGGCACCAAGGTGCCGATGATTCCCAATGGTCCCACACCACCATCGACCTAAGATACCG
ATAGTGTCCGATGCTCTCACACATCTGAGGCACCAAGGTACTGATACCTCCCGACGTTCCCACAC
CACCATCGCCCTTAATTACC
Found at i:17694297 original size:258 final size:257
Alignment explanation
Indices: 17693648--17694298 Score: 670
Period size: 258 Copynumber: 2.5 Consensus size: 257
17693638 CAACAAGGTA
* ** *
17693648 CCGCACCACCATCGGCCTAAGTTACCAATGGTGTCTAATGCTCTCGCACATCCGAGGCACTAAGG
1 CCGCACCACCATCGGCCTTAGTTACCAATGGTGTCCGATGCTCTCGCACAT-CGAGGCACCAAGG
* * * * * *
17693713 TACTGATACTTCCCGACGGTCTCGCACCATCACCGGC-CTAAGTTACCGATGGTGT-TCGATGCT
65 TACTGATACTTCCCGATGGTCCCGCA-CATC-CAGGCACCAAGGTACCGATGGTGTCTCGATGGT
* * * * * ** * *
17693776 CTCGCACATCGAAGGCACCAAAGTGTCGATACTTCCCGATGGTCTCGCACCACTGTCGGCCTTAG
128 CCCGCACATCGAAGGCACCAAAGTGCCGATACTTCCCAATGGTCCCACACCACCATCGACCTAAG
* * * * * *
17693841 TTACCGATGGTGTCTGATACTCTCGCACATCGAAGGCACTATGGTACCGATACTTCCCAATGGTC
193 TTACCGATGGTGTCCGATACTCTCACACATCGAAGGCACCAAGGTACCGATACCTCCCAATGATC
* * * *
17693906 CCGCACCACCATCGGCCTTAGTTGCCAAAGGTGCCCGGTGCTCTCGCACATTCGAGGCACCAAGG
1 CCGCACCACCATCGGCCTTAGTTACCAATGGTGTCCGATGCTCTCGCACA-TCGAGGCACCAAGG
* ** * *
17693971 TATTGATGGTGT-CCGATGCTCCCGTACATCCAAGGCACCAAGGTACCGATGGTGTC-CGA-GGC
65 TACTGATACT-TCCCGATGGTCCCGCACATCC-AGGCACCAAGGTACCGATGGTGTCTCGATGG-
* * *
17694033 TCCCGCACATCCG-AGGCACCAAGGTGCCGATACTTCCCAATGGTCCCATACCACCATTGACCTA
127 TCCCGCACAT-CGAAGGCACCAAAGTGCCGATACTTCCCAATGGTCCCACACCACCATCGACCTA
* ** * *
17694097 AGTTACCGATGGTGTCCGATGCT-TCCACACATCGAAGGCACCAAGGTGTCGATACCTCCCGATT
191 AGTTACCGATGGTGTCCGATACTCT-CACACATCGAAGGCACCAAGGTACCGATACCTCCCAATG
17694161 ATC
255 ATC
* * * * * *
17694164 CCGCACCATCATCGGCCTTAGTTACCGATGGTGTCCGATGATCCCGCACATCAAAGGCACCAGGG
1 CCGCACCACCATCGGCCTTAGTTACCAATGGTGTCCGATGCTCTCGCACATC-GAGGCACCAAGG
* * * * *
17694229 TACCGAAACTTCCCAATGGTCCCGCACATCCGAGGCACCAAGGTGCCGATGAT-TCTCGATGGTC
65 TACTGATACTTCCCGATGGTCCCGCACATCC-AGGCACCAAGGTACCGATGGTGTCTCGATGGTC
17694293 CCGCAC
129 CCGCAC
17694299 CACCATCGAC
Statistics
Matches: 318, Mismatches: 63, Indels: 24
0.79 0.16 0.06
Matches are distributed among these distances:
256 1 0.00
257 14 0.04
258 297 0.93
259 6 0.02
ACGTcount: A:0.22, C:0.33, G:0.23, T:0.22
Consensus pattern (257 bp):
CCGCACCACCATCGGCCTTAGTTACCAATGGTGTCCGATGCTCTCGCACATCGAGGCACCAAGGT
ACTGATACTTCCCGATGGTCCCGCACATCCAGGCACCAAGGTACCGATGGTGTCTCGATGGTCCC
GCACATCGAAGGCACCAAAGTGCCGATACTTCCCAATGGTCCCACACCACCATCGACCTAAGTTA
CCGATGGTGTCCGATACTCTCACACATCGAAGGCACCAAGGTACCGATACCTCCCAATGATC
Found at i:17694540 original size:172 final size:172
Alignment explanation
Indices: 17694248--17694638 Score: 471
Period size: 172 Copynumber: 2.3 Consensus size: 172
17694238 TTCCCAATGG
* * *
17694248 TCCCGCACATCCG-AGGCACCAAGGTGCCGATGATTCTCGATGGTCCCGCACCACCATCGACCTA
1 TCCCGCACAT-CGAAGGCACCAAGGTGCCGATGCTTCCCGATGATCCCGCACCACCATCGACCTA
* * * * * * *
17694312 AGATACCGATAGTGTCTGATGCTCTCGCACATCTGAGGCACTAAGGTACTGATGCTTTCCGACGT
65 AGATACCGAAAGTGCCTGATGCTCTCGCACATCTAAGGCACCAAGGTACCGATGCTTCCCGACGG
* * *
17694377 TCCCACACCACCATCGCCCTTAATTACCGATGGTGTTCGATGC
130 TCCCACACCACCATCGCCCTGAATTACCGATGGTGTCCGATAC
* * * * * *
17694420 TCCCGCACATCGAAGGCACCATGGTACCGATGCTTCCCAATGCTCCCGCACCACCATCGGCCTTA
1 TCCCGCACATCGAAGGCACCAAGGTGCCGATGCTTCCCGATGATCCCGCACCACCATCGACCTAA
** * * * * *
17694485 G-TTGCTAAAGGTGCCTGGTGCTCTCGCACATCTAAGGTACCAAGGTGCCGATGCTTCCCGATGG
66 GATACCGAAA-GTGCCTGATGCTCTCGCACATCTAAGGCACCAAGGTACCGATGCTTCCCGACGG
* * ** *
17694549 TCTCGCACCACCATCGGTCTGAGTTACCGATGGTGTCCGATAC
130 TCCCACACCACCATCGCCCTGAATTACCGATGGTGTCCGATAC
17694592 TCCCGCACATCGAAGGCACCAAGGTGCCGATGCTTCCCGATGATCCC
1 TCCCGCACATCGAAGGCACCAAGGTGCCGATGCTTCCCGATGATCCC
17694639 ACACATCCGA
Statistics
Matches: 183, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
171 6 0.03
172 177 0.97
ACGTcount: A:0.21, C:0.34, G:0.23, T:0.22
Consensus pattern (172 bp):
TCCCGCACATCGAAGGCACCAAGGTGCCGATGCTTCCCGATGATCCCGCACCACCATCGACCTAA
GATACCGAAAGTGCCTGATGCTCTCGCACATCTAAGGCACCAAGGTACCGATGCTTCCCGACGGT
CCCACACCACCATCGCCCTGAATTACCGATGGTGTCCGATAC
Found at i:17694902 original size:43 final size:43
Alignment explanation
Indices: 17693935--17694894 Score: 415
Period size: 43 Copynumber: 22.3 Consensus size: 43
17693925 AGTTGCCAAA
* * * * * **
17693935 GGTGCCCGGTGCTCTCGCACATTCGAGGCACCAAGGTATTGAT
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
*
17693978 GGTGTCCGATGCTCCCGTACATCCAAGGCACCAAGGTACCGAT
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
* * *
17694021 GGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGAT
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
** * * ** ** *
17694064 ACT-TCCCAATGGTCCCATACCA-CCATTG-ACCTAAGTTACCGAT
1 GGTGT-CCGATGCTCCCGCA-CATCCAAGGCACC-AAGGTACCGAT
* * * **
17694107 GGTGTCCGATGCTTCCACACATCGAAGGCACCAAGGTGTCGAT
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
** * ** * ** *
17694150 ACCT-CCCGATTATCCCGCACCAT-CATCGGC-CTTAGTTACCGAT
1 -GGTGTCCGATGCTCCCGCA-CATCCA-AGGCACCAAGGTACCGAT
* * * *
17694193 GGTGTCCGATGATCCCGCACATCAAAGGCACCAGGGTACCGAA
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
** * * * *
17694236 ACT-TCCCAATGGTCCCGCACATCCGAGGCACCAAGGTGCCGAT
1 GGTGT-CCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
* * ** *
17694279 GAT-TCTCGATGGTCCCGCACCA-CCATCG-ACCTAAGATACCGAT
1 GGTGTC-CGATGCTCCCGCA-CATCCAAGGCACC-AAGGTACCGAT
* * * ** * *
17694322 AGTGTCTGATGCTCTCGCACATCTGAGGCACTAAGGTACTGAT
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
* * * * * ** *
17694365 GCTTTCCGACGTTCCCACACCA-CCATCGC-CCTTAA-TTACCGAT
1 GGTGTCCGATGCTCCCGCA-CATCCAAGGCACC--AAGGTACCGAT
* * *
17694408 GGTGTTCGATGCTCCCGCACATCGAAGGCACCATGGTACCGAT
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
* * * ** * * ** *
17694451 GCT-TCCCAATGCTCCCGCACCA-CCATCGGC-CTTAGTTGCTAAA
1 GGTGT-CCGATGCTCCCGCA-CATCCA-AGGCACCAAGGTACCGAT
* * * * *
17694494 GGTG-CCTGGTGCTCTCGCACATCTAAGGTACCAAGGTGCCGAT
1 GGTGTCC-GATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
* * * * * ** *
17694537 GCT-TCCCGATGGTCTCGCACCA-CCATCGG-TCTGAGTTACCGAT
1 GGTGT-CCGATGCTCCCGCA-CATCCA-AGGCACCAAGGTACCGAT
* * *
17694580 GGTGTCCGATACTCCCGCACATCGAAGGCACCAAGGTGCCGAT
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
* * * * *
17694623 GCT-TCCCGATGATCCCACACATCCGAGGTACCAAGGTACCGAT
1 GGTGT-CCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
** * * ** * * *
17694666 AAT-TCCCAAAAG-TCCCGCACCAT-CATCG-ACTTAAGGTGCCTAT
1 GGTGT-CC-GATGCTCCCGCA-CATCCAAGGCAC-CAAGGTACCGAT
*
17694709 GGTGTCCGATGCTCCCGCATATCCAAGGCACCAAGGTACCGAT
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
* * * * * *
17694752 GGTGTCCAATGCTGCCGCACAACTAGGGCACCAAAGTACCGAT
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
* *
17694795 GGTGTCTGATGCTCCCGCACATCCAAGGCACCAAGGTGA-CAAT
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGT-ACCGAT
* * * *
17694838 GGTGTTCGAGGCTCCCGCACATCCGAGACACCAAGGTACCGAT
1 GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
*
17694881 GGTGTCCGAGGCTC
1 GGTGTCCGATGCTC
17694895 TCTCACATGT
Statistics
Matches: 654, Mismatches: 214, Indels: 98
0.68 0.22 0.10
Matches are distributed among these distances:
42 43 0.07
43 565 0.86
44 46 0.07
ACGTcount: A:0.23, C:0.33, G:0.24, T:0.21
Consensus pattern (43 bp):
GGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
Found at i:17700078 original size:43 final size:43
Alignment explanation
Indices: 17700012--17701287 Score: 371
Period size: 43 Copynumber: 29.9 Consensus size: 43
17700002 TTTTAGCCCA
*
17700012 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCTG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCCG
* * * *
17700055 ATGCTCCCGCACATTCGACACACCAAGGTACCGATGGTGTCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCCG
* ** * *
17700098 AGGCTCCCGCACATCCAAGGGACCAAGGTGCCAATGGTGTTCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCCG
* * * * *
17700141 ATGCTCCCACACAACCAGGGCACCAAGGTGTCGATGGTGTCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCCG
** * *
17700184 ATGCTCCCATACATCTAAGGCACCAAGGTGCCGATGGTGTCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCCG
* * *
17700227 ATGCTCCCGCACATCCAAGGCACCAAGGTACCGATGGTGTTCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCCG
* * *
17700270 AGGCTCCCGCACAT--------CTAAGGTACCGATGGTGTCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCCG
* ** * * * *
17700305 AGGCTCCCATATATCCAAGGCACCAAGGTGTCGATGCT-TCCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGT-CCG
* ** * *
17700348 ATGCTCCCGTACATCCGTGGCACCAAGGTGCCGATGCT-TCCTG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCC-G
* * * * * *
17700391 ATGGTACCGCACCAT-CATCGAC-CTAAGTTACCGATGGTGTCCG
1 ATGCTCCCGCA-CATCCA-AGACACCAAGGTGCCGATGGTGTCCG
* * ** * **
17700434 ATGCTCCCACACATCGAATCCACCAAGGTGTCGATACT-TCCTG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCC-G
* * * * ** * * *
17700477 ATGGTCCCGTACCA-CCATCGGC-CTTAGTTGCCGTTGGTGTCCA
1 ATGCTCCCGCA-CATCCA-AGACACCAAGGTGCCGATGGTGTCCG
* * * ** * * **
17700520 ATGATCCTGCACAT-CTAGTGTACCAAGGTACCAATACT-TCCCG
1 ATGCTCCCGCACATCCAAG-ACACCAAGGTGCCGATGGTGT-CCG
* * ** ** *
17700563 ATGATCCCACACATCTGAGGTACCAAGGTGCCGATGAT-TCCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGT-CCG
* * * * * * * *
17700606 ATGGTCTCGCACCA-CCATCGGC-CTAAGTTACCGATGGTGTTCG
1 ATGCTCCCGCA-CATCCA-AGACACCAAGGTGCCGATGGTGTCCG
* * * * *
17700649 ATGCTCTCGCACATCCGAGGCACCAAGGTGCTGATGCT-TCCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGT-CCG
* * * * * * *
17700692 ACAG-TCCCGCATCA-CCATCGGC-CTAAGTTGACAATGGTGTCCG
1 A-TGCTCCCGCA-CATCCA-AGACACCAAGGTGCCGATGGTGTCCG
** * * * *
17700735 ATGCTCCAACACATCGAAGGCACCAAGGTGTCGATGCT-TCTCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTC-CG
* ** * * *
17700778 ATGGTCCCGCACCA-CCATCA-ACCTTAGTTACCGATGGTGTCCG
1 ATGCTCCCGCA-CATCCAAGACACC-AAGGTGCCGATGGTGTCCG
* * * * * * ** * *
17700821 ATGCTCCCGTACATCGAAGGCATCACGATGCCGATACTTTTCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCCG
* ** * * *
17700864 ATGGTCCCGCACCA-CCATCAG-C-CTTAGTTGTCGATGGTGCCCG
1 ATGCTCCCGCA-CATCCA--AGACACCAAGGTGCCGATGGTGTCCG
* ** * * * * *
17700907 GTGCTCTTGCACATCCGAGGCACCAAGGTACCGATGCAT-CCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATG-GTGTCCG
* * * * *** * **
17700950 ATGGTCTCGCACCA-CCATCGGC-TTGAGTTATCGATGGTGTCCG
1 ATGCTCCCGCA-CATCCA-AGACACCAAGGTGCCGATGGTGTCCG
* ** * * * *
17700993 ATGCTCCTGCACATTGAAGGCACCAACGTACCGAT-GTTTCCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGT-CCG
* * * * * *
17701036 ATGGT-CCGTACATCCGAGGCACCAAGGTGCCAATGAT-TCCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGT-CCG
* ** * * * *
17701078 ATGATCATGCACCA-CCATCGGC-CTAAGGTGCCTATGGTGTCCG
1 ATGCTCCCGCA-CATCCA-AGACACCAAGGTGCCGATGGTGTCCG
* * *
17701121 ATGCTCCCGTACATCCAA-AGCATCAAGGTACCGATGGTGTCCG
1 ATGCTCCCGCACATCCAAGA-CACCAAGGTGCCGATGGTGTCCG
* * * * * * *
17701164 ATGCTGCCGTACAACCAGGGCACCAAGGTGCTGATTGTGTCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCCG
** * * **
17701207 ATGCTCCCGCACATCCAAGGTACTAAGGTGACGATTATGTCCG
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCCG
* * * * *
17701250 AGGCTCCTGCACATTCGAGACACCAAGGTACCGATGGT
1 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGT
17701288 TACCTAGGCT
Statistics
Matches: 884, Mismatches: 284, Indels: 130
0.68 0.22 0.10
Matches are distributed among these distances:
35 30 0.03
41 3 0.00
42 79 0.09
43 721 0.82
44 49 0.06
45 2 0.00
ACGTcount: A:0.22, C:0.32, G:0.24, T:0.22
Consensus pattern (43 bp):
ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCCG
Found at i:17700354 original size:78 final size:78
Alignment explanation
Indices: 17700208--17700362 Score: 195
Period size: 78 Copynumber: 2.0 Consensus size: 78
17700198 CTAAGGCACC
* * * * *
17700208 AAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGATGGTGTTCGAGG
1 AAGGTACCGATGGTGTCCGAGGCTCCCACACATCCAAGGCACCAAGGTACCGATGCTGTCCGAGG
17700273 CTCCCGCACATCT
66 CTCCCGCACATCT
* * ** *
17700286 AAGGTACCGATGGTGTCCGAGGCTCCCATATATCCAAGGCACCAAGGTGTCGATGCT-TCCCGAT
1 AAGGTACCGATGGTGTCCGAGGCTCCCACACATCCAAGGCACCAAGGTACCGATGCTGT-CCGAG
*
17700350 GCTCCCGTACATC
65 GCTCCCGCACATC
17700363 CGTGGCACCA
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
77 1 0.02
78 64 0.98
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (78 bp):
AAGGTACCGATGGTGTCCGAGGCTCCCACACATCCAAGGCACCAAGGTACCGATGCTGTCCGAGG
CTCCCGCACATCT
Found at i:17700401 original size:121 final size:124
Alignment explanation
Indices: 17700172--17700488 Score: 340
Period size: 121 Copynumber: 2.5 Consensus size: 124
17700162 ACCAAGGTGT
* * *
17700172 CGATGGTGTCCGATGCTCCCATACATCTAAGGCACCAAGGTGCCGATGGTGT-CCGATGCTCCCG
1 CGATGGTGTCCGATGCTCCCATACATCCAAGGCACCAAGGTGTCGATGCT-TCCCGATGCTCCCG
* * * *
17700236 CACATCCAAGGCACCAAGGTACCGATGGTGTTCGAGGCTCCCG-CA-CAT-CTAAGGTAC
65 TACATCCAAGGCACCAAGGTACCGATGCTGTCCGAGGCTACCGCCATCATCCTAAGGTAC
* *
17700293 CGATGGTGTCCGAGGCTCCCATATATCCAAGGCACCAAGGTGTCGATGCTTCCCGATGCTCCCGT
1 CGATGGTGTCCGATGCTCCCATACATCCAAGGCACCAAGGTGTCGATGCTTCCCGATGCTCCCGT
** * *
17700358 ACATCCGTGGCACCAAGGTGCCGATGCT-TCCTGATGG-TACCGCACCATCATCGACCTAAGTTA
66 ACATCCAAGGCACCAAGGTACCGATGCTGTCC-GA-GGCTACCG--CCATCAT---CCTAAGGTA
17700421 C
124 C
* * ** * * *
17700422 CGATGGTGTCCGATGCTCCCACACATCGAATCCACCAAGGTGTCGATACTTCCTGATGGTCCCGT
1 CGATGGTGTCCGATGCTCCCATACATCCAAGGCACCAAGGTGTCGATGCTTCCCGATGCTCCCGT
17700487 AC
66 AC
17700489 CACCATCGGC
Statistics
Matches: 163, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
120 3 0.02
121 87 0.53
122 2 0.01
124 2 0.01
125 3 0.02
129 66 0.40
ACGTcount: A:0.21, C:0.32, G:0.25, T:0.22
Consensus pattern (124 bp):
CGATGGTGTCCGATGCTCCCATACATCCAAGGCACCAAGGTGTCGATGCTTCCCGATGCTCCCGT
ACATCCAAGGCACCAAGGTACCGATGCTGTCCGAGGCTACCGCCATCATCCTAAGGTAC
Found at i:17700425 original size:164 final size:164
Alignment explanation
Indices: 17700012--17700448 Score: 441
Period size: 164 Copynumber: 2.6 Consensus size: 164
17700002 TTTTAGCCCA
** * * * * * * *
17700012 ATGCTCCCGCACATCCAAGACACCAAGGTGCCGATGGTGTCTGATGCTCCCGCACATTCGACACA
1 ATGCTCCCATACATCCAAGGCACCAAGGTGCCGATGCTGTCCGATGCTACCGCACATCCAACGCA
* * * *
17700077 CCAAGGTACCGATGGTGTCCGAGGCTCCCGCACATCCAAGGGACCAAGGTGCCAATGGTGTTCGA
66 CCAAGGTACCGATGGTGTCCGAGGCT-CC-CACA--C-A---TCTAAGGTACCAATGGTGTCCGA
* * *
17700142 TGCTCCCACACAACCAGGGCACCAAGGTGTCGATGGTGTCCG
123 GGCTCCCACACAACCAAGGCACCAAGGTGTCGATGCTGTCCG
* * * *
17700184 ATGCTCCCATACATCTAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCA
1 ATGCTCCCATACATCCAAGGCACCAAGGTGCCGATGCTGTCCGATGCTACCGCACATCCAACGCA
* * *
17700249 CCAAGGTACCGATGGTGTTCGAGGCTCCCGCACATCTAAGGTACCGATGGTGTCCGAGGCTCCCA
66 CCAAGGTACCGATGGTGTCCGAGGCTCCCACACATCTAAGGTACCAATGGTGTCCGAGGCTCCCA
* * *
17700314 TATATCCAAGGCACCAAGGTGTCGATGCT-TCCCG
131 CACAACCAAGGCACCAAGGTGTCGATGCTGT-CCG
* ** * *
17700348 ATGCTCCCGTACATCCGTGGCACCAAGGTGCCGATGCT-TCCTGATGGTACCGCACCAT-CATCG
1 ATGCTCCCATACATCCAAGGCACCAAGGTGCCGATGCTGTCC-GATGCTACCGCA-CATCCAACG
* *
17700411 -ACCTAAGTTACCGATGGTGTCCGATGCTCCCACACATC
64 CACC-AAGGTACCGATGGTGTCCGAGGCTCCCACACATC
17700449 GAATCCACCA
Statistics
Matches: 226, Mismatches: 35, Indels: 16
0.82 0.13 0.06
Matches are distributed among these distances:
163 7 0.03
164 128 0.57
165 3 0.01
167 1 0.00
168 1 0.00
170 3 0.01
171 2 0.01
172 81 0.36
ACGTcount: A:0.22, C:0.33, G:0.25, T:0.20
Consensus pattern (164 bp):
ATGCTCCCATACATCCAAGGCACCAAGGTGCCGATGCTGTCCGATGCTACCGCACATCCAACGCA
CCAAGGTACCGATGGTGTCCGAGGCTCCCACACATCTAAGGTACCAATGGTGTCCGAGGCTCCCA
CACAACCAAGGCACCAAGGTGTCGATGCTGTCCG
Found at i:17700708 original size:86 final size:85
Alignment explanation
Indices: 17700572--17701042 Score: 473
Period size: 86 Copynumber: 5.5 Consensus size: 85
17700562 GATGATCCCA
* * * *
17700572 CACATCTGAGGTACCAAGGTGCCGATGATTCCCGATGGTCTCGCACCACCATCGGCCTAAGTTAC
1 CACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCGGCCTAAGTTAC
*
17700637 CGATGGTGTTCGATGCTCTCG
66 CGATGGTGTCCGATGCTC-CG
* ** *
17700658 CACATCCGAGGCACCAAGGTGCTGATGCTTCCCGACAGTCCCGCATCACCATCGGCCTAAGTTGA
1 CACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCGGCCTAAGTT-A
* *
17700723 -CAATGGTGTCCGATGCTCCAA
65 CCGATGGTGTCCGATGCTCC-G
* * ** *
17700744 CACAT-CGAAGGCACCAAGGTGTCGATGCTTCTCGATGGTCCCGCACCACCATCAACCTTAGTTA
1 CACATCCG-AGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCGGCCTAAGTTA
17700808 CCGATGGTGTCCGATGCTCCCG
65 CCGATGGTGTCCGATGCT-CCG
* * * * * ** * * *
17700830 TACAT-CGAAGGCATCACGATGCCGATACTTTTCGATGGTCCCGCACCACCATCAGCCTTAGTTG
1 CACATCCG-AGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCGGCCTAAGTTA
* * * *
17700894 TCGATGGTGCCCGGTGCTCTTG
65 CCGATGGTGTCCGATGCTC-CG
* * * * * *
17700916 CACATCCGAGGCACCAAGGTACCGATGCATCCCGATGGTCTCGCACCACCATCGGCTTGAGTTAT
1 CACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCGGCCTAAGTTAC
17700981 CGATGGTGTCCGATGCTCCTG
66 CGATGGTGTCCGATGCTCC-G
* * * *
17701002 CACAT-TGAAGGCACCAACGTACCGATGTTTCCCGATGGTCC
1 CACATCCG-AGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
17701043 GTACATCCGA
Statistics
Matches: 319, Mismatches: 57, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
85 6 0.02
86 308 0.97
87 5 0.02
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.23
Consensus pattern (85 bp):
CACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCGGCCTAAGTTAC
CGATGGTGTCCGATGCTCCG
Found at i:17700732 original size:215 final size:215
Alignment explanation
Indices: 17700341--17700733 Score: 513
Period size: 215 Copynumber: 1.8 Consensus size: 215
17700331 GGTGTCGATG
* ** * * * *
17700341 CTTCCCGATGCTCCCGTACATCCGTGGCACCAAGGTGCCGATGCTTCCTGATGGTACCGCACCAT
1 CTTCCCGATGATCCCACACATCCGAGGCACCAAGGTGCCGATGATTCCCGATGGTACCGCACCAC
*
17700406 CATCGACCTAAGTTACCGATGGTGTCCGATGCTCCCACACATCGAATCCACCAAGGTGTCGATAC
66 CATCGACCTAAGTTACCGATGGTGTCCGATGCTCCCACACATCGAAGCCACCAAGGTGTCGATAC
* ** * * * **
17700471 TTCCTGATGGTCCCGTACCACCATCGGCCTTAGTTGCCGTTGGTGTCCAATGATCCTGCACATCT
131 TTCCCGACAGTCCCGCACCACCATCGGCCTAAGTTGACAATGGTGTCCAATGATCCTGCACATCT
17700536 AGTGTACCAAGGTACCAATA
196 AGTGTACCAAGGTACCAATA
* *
17700556 CTTCCCGATGATCCCACACATCTGAGGTACCAAGGTGCCGATGATTCCCGATGGT-CTCGCACCA
1 CTTCCCGATGATCCCACACATCCGAGGCACCAAGGTGCCGATGATTCCCGATGGTAC-CGCACCA
* * * * *
17700620 CCATCGGCCTAAGTTACCGATGGTGTTCGATGCTCTCGCACATCCG-AGGCACCAAGGTG-CTGA
65 CCATCGACCTAAGTTACCGATGGTGTCCGATGCTCCCACACAT-CGAAGCCACCAAGGTGTC-GA
* *
17700683 TGCTTCCCGACAGTCCCGCATCACCATCGGCCTAAGTTGACAATGGTGTCC
128 TACTTCCCGACAGTCCCGCACCACCATCGGCCTAAGTTGACAATGGTGTCC
17700734 GATGCTCCAA
Statistics
Matches: 150, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
214 2 0.01
215 146 0.97
216 2 0.01
ACGTcount: A:0.21, C:0.33, G:0.22, T:0.24
Consensus pattern (215 bp):
CTTCCCGATGATCCCACACATCCGAGGCACCAAGGTGCCGATGATTCCCGATGGTACCGCACCAC
CATCGACCTAAGTTACCGATGGTGTCCGATGCTCCCACACATCGAAGCCACCAAGGTGTCGATAC
TTCCCGACAGTCCCGCACCACCATCGGCCTAAGTTGACAATGGTGTCCAATGATCCTGCACATCT
AGTGTACCAAGGTACCAATA
Found at i:17700762 original size:215 final size:214
Alignment explanation
Indices: 17700295--17700763 Score: 512
Period size: 215 Copynumber: 2.2 Consensus size: 214
17700285 TAAGGTACCG
* * * * ** * * * **
17700295 ATGGTGTCCGAGGCTCCCATATATCCAAGGCACCAAGGTGTCGATGCTTCCCGATGCTCCCGTAC
1 ATGGTGTCCGATGCTCCAACACAT-CAAGGCACCAAGGTACCAATACTTCCCGATGATCCCACAC
* * * *
17700360 ATCCGTGGCACCAAGGTGCCGATGCTTCCTGATGGTACCGCACCATCATCGACCTAAGTTACCGA
65 ATCCGAGGCACCAAGGTGCCGATGATTCCCGATGGTACCGCACCACCATCGACCTAAGTTACCGA
* * ** *
17700425 TGGTGTCCGATGCTCCCACACATCGAATCCACCAAGGTGTCGATACTTCCTGATGGTCCCGTACC
130 TGGTGTCCGATGCTCCCACACATCGAAGCCACCAAGGTGTCGATACTTCCCGACAGTCCCGCACC
* * *
17700490 ACCATCGGCCTTAGTTGCCG
195 ACCATCGGCCTAAGTTGACA
* * * ** * *
17700510 TTGGTGTCCAATGATCCTGCACATCTAGTGTACCAAGGTACCAATACTTCCCGATGATCCCACAC
1 ATGGTGTCCGATGCTCCAACACATCAAG-GCACCAAGGTACCAATACTTCCCGATGATCCCACAC
* * *
17700575 ATCTGAGGTACCAAGGTGCCGATGATTCCCGATGGT-CTCGCACCACCATCGGCCTAAGTTACCG
65 ATCCGAGGCACCAAGGTGCCGATGATTCCCGATGGTAC-CGCACCACCATCGACCTAAGTTACCG
* * * * *
17700639 ATGGTGTTCGATGCTCTCGCACATCCG-AGGCACCAAGGTG-CTGATGCTTCCCGACAGTCCCGC
129 ATGGTGTCCGATGCTCCCACACAT-CGAAGCCACCAAGGTGTC-GATACTTCCCGACAGTCCCGC
*
17700702 ATCACCATCGGCCTAAGTTGACA
192 ACCACCATCGGCCTAAGTTGACA
17700725 ATGGTGTCCGATGCTCCAACACATCGAAGGCACCAAGGT
1 ATGGTGTCCGATGCTCCAACACATC-AAGGCACCAAGGT
17700764 GTCGATGCTT
Statistics
Matches: 204, Mismatches: 45, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
214 5 0.02
215 195 0.96
216 4 0.02
ACGTcount: A:0.22, C:0.32, G:0.23, T:0.23
Consensus pattern (214 bp):
ATGGTGTCCGATGCTCCAACACATCAAGGCACCAAGGTACCAATACTTCCCGATGATCCCACACA
TCCGAGGCACCAAGGTGCCGATGATTCCCGATGGTACCGCACCACCATCGACCTAAGTTACCGAT
GGTGTCCGATGCTCCCACACATCGAAGCCACCAAGGTGTCGATACTTCCCGACAGTCCCGCACCA
CCATCGGCCTAAGTTGACA
Found at i:17701040 original size:172 final size:171
Alignment explanation
Indices: 17700559--17701042 Score: 521
Period size: 172 Copynumber: 2.8 Consensus size: 171
17700549 ACCAATACTT
* * * *
17700559 CCCGATGATCCCACACATCTGAGGTACCAAGGTGCCGATG-ATTCCCGATGGTCTCGCACCACCA
1 CCCGATGCTCCAACACATCCGAGGCACCAAGGTGCCGATGCA-TCCCGATGGTCTCGCACCACCA
* * * * *
17700623 TCGGCCTAAGTTACCGATGGTGTTCGATGCT-CTCGCACATCCG-AGGCACCAAGGTGCTGATGC
65 TCGG-CTTAGTTACCGATGGTGTCCGATGCTCCT-GCACAT-CGAAGGCACCAACGTGCCGATGT
** * *
17700686 TTCCCGACAGTCCCGCATCACCATCGGCCTAAGTTGACAATGGTG
127 TTCCCGATGGTCCCGCACCACCATCAGCCTAAGTTGACAATGGTG
* * * * *
17700731 TCCGATGCTCCAACACAT-CGAAGGCACCAAGGTGTCGATGCTTCTCGATGGTCCCGCACCACCA
1 CCCGATGCTCCAACACATCCG-AGGCACCAAGGTGCCGATGCATCCCGATGGTCTCGCACCACCA
** * * * *
17700795 TCAACCTTAGTTACCGATGGTGTCCGATGCTCCCGTACATCGAAGGCATC-ACGATGCCGATACT
65 TC-GGCTTAGTTACCGATGGTGTCCGATGCTCCTGCACATCGAAGGCACCAACG-TGCCGAT-GT
* * * *
17700859 TT-TCGATGGTCCCGCACCACCATCAGCCTTAGTTGTCGATGGTG
127 TTCCCGATGGTCCCGCACCACCATCAGCCTAAGTTGACAATGGTG
* *** *
17700903 CCCGGTGCTCTTGCACATCCGAGGCACCAAGGTACCGATGCATCCCGATGGTCTCGCACCACCAT
1 CCCGATGCTCCAACACATCCGAGGCACCAAGGTGCCGATGCATCCCGATGGTCTCGCACCACCAT
* * *
17700968 CGGCTTGAGTTATCGATGGTGTCCGATGCTCCTGCACATTGAAGGCACCAACGTACCGATGTTTC
66 CGGCTT-AGTTACCGATGGTGTCCGATGCTCCTGCACATCGAAGGCACCAACGTGCCGATGTTTC
17701033 CCGATGGTCC
130 CCGATGGTCC
17701043 GTACATCCGA
Statistics
Matches: 253, Mismatches: 48, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
171 11 0.04
172 234 0.92
173 8 0.03
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.23
Consensus pattern (171 bp):
CCCGATGCTCCAACACATCCGAGGCACCAAGGTGCCGATGCATCCCGATGGTCTCGCACCACCAT
CGGCTTAGTTACCGATGGTGTCCGATGCTCCTGCACATCGAAGGCACCAACGTGCCGATGTTTCC
CGATGGTCCCGCACCACCATCAGCCTAAGTTGACAATGGTG
Found at i:17701080 original size:128 final size:129
Alignment explanation
Indices: 17700917--17701194 Score: 314
Period size: 128 Copynumber: 2.2 Consensus size: 129
17700907 GTGCTCTTGC
* * * * * * *
17700917 ACATCCGAGGCACCAAGGTACCGATGCATCCCGATGGTC-TCGCACCACCATCGGCTTGAGTTAT
1 ACATCCGAGGCACCAAGGTGCCAATGCATCCCGATGATCAT-GCACCACCATCGGCCTAAGGTAC
* ** * * *
17700981 CGATGGTGTCCGATGCTCCTGCACATTGAAGGCACCAACGTACCGAT-GTTTCCCGATGGT-CCG
65 CGATGGTGTCCGATGCTCCCGCACATCCAAAGCACCAACGTACCGATGGTGT-CCGATGCTGCCG
17701044 T
129 T
*
17701045 ACATCCGAGGCACCAAGGTGCCAATG-ATTCCCGATGATCATGCACCACCATCGGCCTAAGGTGC
1 ACATCCGAGGCACCAAGGTGCCAATGCA-TCCCGATGATCATGCACCACCATCGGCCTAAGGTAC
* * * *
17701109 CTATGGTGTCCGATGCTCCCGTACATCCAAAGCATCAAGGTACCGATGGTGTCCGATGCTGCCGT
65 CGATGGTGTCCGATGCTCCCGCACATCCAAAGCACCAACGTACCGATGGTGTCCGATGCTGCCGT
*
17701174 ACAACC-AGGGCACCAAGGTGC
1 ACATCCGA-GGCACCAAGGTGC
17701195 TGATTGTGTC
Statistics
Matches: 126, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
127 1 0.01
128 99 0.79
129 26 0.21
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (129 bp):
ACATCCGAGGCACCAAGGTGCCAATGCATCCCGATGATCATGCACCACCATCGGCCTAAGGTACC
GATGGTGTCCGATGCTCCCGCACATCCAAAGCACCAACGTACCGATGGTGTCCGATGCTGCCGT
Found at i:17701990 original size:43 final size:42
Alignment explanation
Indices: 17701943--17702677 Score: 199
Period size: 43 Copynumber: 16.9 Consensus size: 42
17701933 TGTCCCACGC
* *
17701943 TCCCGCACATGCAAGGCACCAAGGTGCCGATGCTTCTCGATGG
1 TCCCGCACATCCAAGGCACCAAGGTACCGATGCTTC-CGATGG
* * * * * *
17701986 TCCCGCACCA-CCATTGGC-CAAAGCTACCGATGGTGTCTGATGC
1 TCCCGCA-CATCCA-AGGCACCAAGGTACCGATGCT-TCCGATGG
* *
17702029 TCCCGCACATTCGAGGCACCAAGGTACCGATGCTTCCCGATGG
1 TCCCGCACATCCAAGGCACCAAGGTACCGATGCTT-CCGATGG
* * * * * *
17702072 TCCCGCACCA-CCATCGGC-CTAAGTTATCGATGGTGTCCGATGC
1 TCCCGCA-CATCCA-AGGCACCAAGGTACCGATGCT-TCCGATGG
* *
17702115 TCCCGCACATCGAAGGCACCAAGGTGCCGATGCTTACCGATGG
1 TCCCGCACATCCAAGGCACCAAGGTACCGATGCTT-CCGATGG
* * * * * *
17702158 TCCTGCGC-CA--CAA-TCATCCTTAGTTACCGATGGTGTCTGATGC
1 TCC--CGCACATCCAAGGCA-CC-AAGGTACCGATGCT-TCCGATGG
* * * * * * *
17702201 TCTCGCACGTCGAAGGCACCATGGTGCCGATACTTTTCGATGG
1 TCCCGCACATCCAAGGCACCAAGGTACCGATGC-TTCCGATGG
** * * * * *
17702244 TCCCGCACCAT-CATCG-ACCTTAGTTACCGATGGTGCCCGATGC
1 TCCCGCA-CATCCAAGGCACC-AAGGTACCGATGCT-TCCGATGG
* * * * *
17702287 TCCTGGACATTCGAGGTACCAAGGTACCGATGCTTCTCGATGG
1 TCCCGCACATCCAAGGCACCAAGGTACCGATGCTTC-CGATGG
* * ** * * *
17702330 TCCCGTACCA-CCATTGGC-TTAA-GTCATCGATGGTGTCCGATGC
1 TCCCGCA-CATCCA-AGGCACCAAGGT-ACCGATGCT-TCCGATGG
* * * * *
17702373 TCTCGCACATCCAAGACACCAAGGTGTCGATGCTTTCTAATGGTGTCCGATGC
1 TCCCGCACATCCAAGGCACCAA-G-GT--A--C---C-GATGCT-TCCGATGG
* *
17702426 TCTCGCACATCCAAGGCACCAAGGTATCGATGCTTCCCGATGG
1 TCCCGCACATCCAAGGCACCAAGGTACCGATGCTT-CCGATGG
* * ** * * * *
17702469 TCTCGCAC-TACCATCGGC-CTTAGTTACCAATGGTGTCCGATGT
1 TCCCGCACAT-CCA-AGGCACCAAGGTACCGATGCT-TCCGATGG
* * *
17702512 TCCCGCACATCAAAGGCACCATGGTACCGATACTTCTCGATGG
1 TCCCGCACATCCAAGGCACCAAGGTACCGATGCTTC-CGATGG
* * * * * * *
17702555 TCCCGCACATCCGAGGGACCAAAGTGCCAATGATTCCTAATGG
1 TCCCGCACATCCAAGGCACCAAGGTACCGATGCTTCC-GATGG
* * ** * * *
17702598 TCACGCAC-TACCATCGGC-CTGAGTTACCGATGGTGTCCGATGC
1 TCCCGCACAT-CCA-AGGCACCAAGGTACCGATGCT-TCCGATGG
* * *
17702641 TCTCGCACATCCTAGGCACCAAGGTGCCGATGCTTCC
1 TCCCGCACATCCAAGGCACCAAGGTACCGATGCTTCC
17702678 CCACGGTCTC
Statistics
Matches: 483, Mismatches: 152, Indels: 115
0.64 0.20 0.15
Matches are distributed among these distances:
41 5 0.01
42 46 0.10
43 340 0.70
44 44 0.09
45 5 0.01
46 2 0.00
47 1 0.00
49 1 0.00
51 2 0.00
52 2 0.00
53 35 0.07
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.23
Consensus pattern (42 bp):
TCCCGCACATCCAAGGCACCAAGGTACCGATGCTTCCGATGG
Found at i:17702071 original size:86 final size:86
Alignment explanation
Indices: 17701926--17703177 Score: 579
Period size: 86 Copynumber: 14.3 Consensus size: 86
17701916 TTTTTTTGGC
* * * *
17701926 CCGATGGTGTCCCACGCTCCCGCACATGCAAGGCACCAAGGTGCCGATGCTTCTCGATGGTCCCG
1 CCGATGGTGTCCGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCTCGATGGTCCCG
* * *
17701991 CACCACCATTGGCCAAAGCTA
66 CACCACCATCGGCCTAAGTTA
* * *
17702012 CCGATGGTGTCTGATGCTCCCGCACATTCGAGGCACCAAGGTACCGATGCTTCCCGATGGTCCCG
1 CCGATGGTGTCCGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCTCGATGGTCCCG
17702077 CACCACCATCGGCCTAAGTTA
66 CACCACCATCGGCCTAAGTTA
*
17702098 TCGATGGTGTCCGATGCTCCCGCACA-TCGAAGGCACCAAGGTGCCGATGCTTAC-CGATGGTCC
1 CCGATGGTGTCCGATGCTCCCGCACATTCG-AGGCACCAAGGTGCCGATGCTT-CTCGATGGTCC
* * * ** *
17702161 TGCGCCACAATCATCCTTAGTTA
64 CGCACCACCATCGGCCTAAGTTA
* * * * * *
17702184 CCGATGGTGTCTGATGCTCTCGCAC-GTCGAAGGCACCATGGTGCCGATACTTTTCGATGGTCCC
1 CCGATGGTGTCCGATGCTCCCGCACATTCG-AGGCACCAAGGTGCCGATGCTTCTCGATGGTCCC
* * *
17702248 GCACCATCATCGACCTTAGTTA
65 GCACCACCATCGGCCTAAGTTA
* * * * *
17702270 CCGATGGTGCCCGATGCTCCTGGACATTCGAGGTACCAAGGTACCGATGCTTCTCGATGGTCCCG
1 CCGATGGTGTCCGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCTCGATGGTCCCG
* * * *
17702335 TACCACCATTGGCTTAAGTCA
66 CACCACCATCGGCCTAAGTTA
* * * * * * *
17702356 TCGATGGTGTCCGATGCTCTCGCACATCCAAGACACCAAGGTGTCGATGCTT-TCTAATGGTGTC
1 CCGATGGTGTCCGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCTC-GAT-G-GTC
* * * * *
17702420 CGATGCTCTCGCACATCCAAGGCACCAAGGTA
63 C--CGCAC-CAC-CAT-C--GGC-CTAAGTTA
* * * * * * ** * * * * *
17702452 TCGATGCT-TCCCGATGGTCTCGCAC-TACCATCGGC-CTTAGTTACCAATGGTGTC-CGATGTT
1 CCGATGGTGT-CCGATGCTCCCGCACATTCGA--GGCACCAAGGTGCCGATGCT-TCTCGATGGT
* ** * * *
17702513 CCCGCA-CATCAAAGGCACCATGGTA
62 CCCGCACCACCATCGGC-CTAAGTTA
** * * * * * * * *
17702538 CCGATACT-TCTCGATGGTCCCGCACATCCGAGGGACCAAAGTGCCAATGATTC-CTAATGGTCA
1 CCGATGGTGTC-CGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCTC-GATGGTCC
* *
17702601 CGCACTACCATCGGCCTGAGTTA
64 CGCACCACCATCGGCCTAAGTTA
* * * * * * * *
17702624 CCGATGGTGTCCGATGCTCTCGCACATCCTAGGCACCAAGGTGCCGATGCTTCCCCACGGTCTCA
1 CCGATGGTGTCCGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCTCGATGGTCCCG
** * *
17702689 CATTACCATCAGCCTAAGTTG
66 CACCACCATCGGCCTAAGTTA
* ** * * * *
17702710 TCGATCATGAT-CGATGCACCCGCACA-TCGAAGGTACCAAGGTACCGATGCTTCCCGATGGTGC
1 CCGATGGTG-TCCGATGCTCCCGCACATTCG-AGGCACCAAGGTGCCGATGCTTCTCGATGGT-C
* * * *
17702773 CCGATGCTCTCGCACATCTGAGGTACC-AAGGTG
63 CC---GCAC-CAC-CATC---GG--CCTAAGTTA
* * * * * * * * ** ** * *
17702806 TCGATGCTTTTCGATGGTCCCACAC-TACCATCGGC-CTGACTTGCCGATGGTGTC-CGATGCTC
1 CCGATGGTGTCCGATGCTCCCGCACATTCGA--GGCACCAAGGTGCCGATGCT-TCTCGATGGTC
* ** * *
17702868 CCGCA-TATTGA-AGGCACTAAGGTA
63 CCGCACCA-CCATCGGC-CTAAGTTA
* * * * * *
17702892 CCGATAGT-TCCCGATAG-TCCCGCACATTCGAGGTACCAAGATGTCGATACTTCCCGATGGTCC
1 CCGATGGTGT-CCGAT-GCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCTCGATGGTCC
* *
17702955 CGCACCACCATCGGCCTTAGTTG
64 CGCACCACCATCGGCCTAAGTTA
* * * * * * * * *
17702978 TCGATAGTATTCGATGCTCCCACACA-TCGAAGGCACCATGGTGTCGATACTTC-CTGATGGTCT
1 CCGATGGTGTCCGATGCTCCCGCACATTCG-AGGCACCAAGGTGCCGATGCTTCTC-GATGGTCC
* * *
17703041 CACACCACCTTCGGCCTTAGTTA
64 CGCACCACCATCGGCCTAAGTTA
* * * * * *
17703064 CAGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGGTGCTTCCCGATGGTCCCG
1 CCGATGGTGTCCGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCTCGATGGTCCCG
** * *
17703129 TGCCACCATCGACCTGAGTTA
66 CACCACCATCGGCCTAAGTTA
** *
17703150 CCGATGGTGTTTGATGCTCCTGCACATT
1 CCGATGGTGTCCGATGCTCCCGCACATT
17703178 GAAGACACAG
Statistics
Matches: 871, Mismatches: 233, Indels: 124
0.71 0.19 0.10
Matches are distributed among these distances:
84 1 0.00
85 23 0.03
86 688 0.79
87 32 0.04
88 4 0.00
89 2 0.00
90 5 0.01
91 3 0.00
92 11 0.01
94 3 0.00
95 14 0.02
96 75 0.09
97 10 0.01
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.24
Consensus pattern (86 bp):
CCGATGGTGTCCGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCTCGATGGTCCCG
CACCACCATCGGCCTAAGTTA
Found at i:17702416 original size:53 final size:53
Alignment explanation
Indices: 17702359--17702460 Score: 186
Period size: 53 Copynumber: 1.9 Consensus size: 53
17702349 TAAGTCATCG
*
17702359 ATGGTGTCCGATGCTCTCGCACATCCAAGACACCAAGGTGTCGATGCTTTCTA
1 ATGGTGTCCGATGCTCTCGCACATCCAAGACACCAAGGTATCGATGCTTTCTA
*
17702412 ATGGTGTCCGATGCTCTCGCACATCCAAGGCACCAAGGTATCGATGCTT
1 ATGGTGTCCGATGCTCTCGCACATCCAAGACACCAAGGTATCGATGCTT
17702461 CCCGATGGTC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (53 bp):
ATGGTGTCCGATGCTCTCGCACATCCAAGACACCAAGGTATCGATGCTTTCTA
Found at i:17702467 original size:139 final size:139
Alignment explanation
Indices: 17702273--17702675 Score: 326
Period size: 139 Copynumber: 3.0 Consensus size: 139
17702263 TTAGTTACCG
* * * * * *
17702273 ATGGTGCCCGATGCTCCTGGACATTCGAGGTACCAAGGTACCGATGCTTCTCGATGGTCCCGTAC
1 ATGGTGCCCGATGCTCCTGCACATCCAAGGCACCAAGGTACCGATGCTTCCCGATGGTCCCGCAC
* * * * *
17702338 CACCATTGG-CTTAAGTCATCGATGGTGTCCGATGCTCTCGCACATCCAAGACACCAAGGTGTCG
66 CACCATCGGCCTT-AGTCACCAATGGTGTCCGATGCTCCCGCACATCAAAGACACCAAGGTGTCG
17702402 ATGCTTTCTA
130 ATGCTTTCTA
* * *
17702412 ATGGTGTCCGATGCT-CTCGCACATCCAAGGCACCAAGGTATCGATGCTTCCCGATGGTCTCGCA
1 ATGGTGCCCGATGCTCCT-GCACATCCAAGGCACCAAGGTACCGATGCTTCCCGATGGTCCCGCA
* * * * * **
17702476 CTACCATCGGCCTTAGTTACCAATGGTGTCCGATGTTCCCGCACATCAAAGGCACCATGGTACCG
65 CCACCATCGGCCTTAGTCACCAATGGTGTCCGATGCTCCCGCACATCAAAGACACCAAGGTGTCG
*
17702541 ATAC-TTC--
130 ATGCTTTCTA
* * * * * * * * ** *
17702548 ----T---CGATGGTCCCGCACATCCGAGGGACCAAAGTGCCAATGATTCCTAATGGTCACGCAC
1 ATGGTGCCCGATGCTCCTGCACATCCAAGGCACCAAGGTACCGATGCTTCCCGATGGTCCCGCAC
* * * * * ** * *
17702606 TACCATCGGCCTGAGTTACCGATGGTGTCCGATGCTCTCGCACATCCTAGGCACCAAGGTGCCGA
66 CACCATCGGCCTTAGTCACCAATGGTGTCCGATGCTCCCGCACATCAAAGACACCAAGGTGTCGA
17702671 TGCTT
131 TGCTT
17702676 CCCCACGGTC
Statistics
Matches: 217, Mismatches: 43, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
129 102 0.47
130 2 0.01
132 1 0.00
138 5 0.02
139 104 0.48
140 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.24
Consensus pattern (139 bp):
ATGGTGCCCGATGCTCCTGCACATCCAAGGCACCAAGGTACCGATGCTTCCCGATGGTCCCGCAC
CACCATCGGCCTTAGTCACCAATGGTGTCCGATGCTCCCGCACATCAAAGACACCAAGGTGTCGA
TGCTTTCTA
Found at i:17702778 original size:53 final size:53
Alignment explanation
Indices: 17702721--17702823 Score: 136
Period size: 53 Copynumber: 1.9 Consensus size: 53
17702711 CGATCATGAT
17702721 CGATGCACCCGCACATC-GAAGGTACCAAGGTACCGATGCTTCCCGATGGTGCC
1 CGATGCACCCGCACATCTG-AGGTACCAAGGTACCGATGCTTCCCGATGGTGCC
* * ** **
17702774 CGATGCTCTCGCACATCTGAGGTACCAAGGTGTCGATGCTTTTCGATGGT
1 CGATGCACCCGCACATCTGAGGTACCAAGGTACCGATGCTTCCCGATGGT
17702824 CCCACACTAC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
53 42 0.98
54 1 0.02
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.23
Consensus pattern (53 bp):
CGATGCACCCGCACATCTGAGGTACCAAGGTACCGATGCTTCCCGATGGTGCC
Found at i:17702881 original size:139 final size:139
Alignment explanation
Indices: 17702619--17702906 Score: 339
Period size: 139 Copynumber: 2.1 Consensus size: 139
17702609 CATCGGCCTG
* *
17702619 AGTTACCGATGGTGTCCGATGCTCTCGCACATCCTAGGCACCAAGGTGCCGATGCTTCCCCACGG
1 AGTTCCCGATGGTGCCCGATGCTCTCGCACATCCTAGGCACCAAGGTGCCGATGCTTCCCCACGG
* * * * *
17702684 TCTCACATTACCATCAGCCTAAGTTGTCGATCATGATCGATGCACCCGCACATCGAAGGTACCAA
66 TCCCACACTACCATCAGCCTAACTTGCCGATCATGATCGATGCACCCGCACATCGAAGGCACCAA
17702749 GGTACCGAT
131 GGTACCGAT
* * ** * *
17702758 -GCTTCCCGATGGTGCCCGATGCTCTCGCACAT-CTGAGGTACCAAGGTGTCGATGCTTTTCGAT
1 AG-TTCCCGATGGTGCCCGATGCTCTCGCACATCCT-AGGCACCAAGGTGCCGATGCTTCCCCAC
* * ** * * *
17702821 GGTCCCACACTACCATCGGCCTGACTTGCCGATGGTG-TCCGATGCTCCCGCATATTGAAGGCAC
64 GGTCCCACACTACCATCAGCCTAACTTGCCGATCATGAT-CGATGCACCCGCACATCGAAGGCAC
*
17702885 TAAGGTACCGAT
128 CAAGGTACCGAT
17702897 AGTTCCCGAT
1 AGTTCCCGAT
17702907 AGTCCCGCAC
Statistics
Matches: 124, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
138 4 0.03
139 119 0.96
140 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.24
Consensus pattern (139 bp):
AGTTCCCGATGGTGCCCGATGCTCTCGCACATCCTAGGCACCAAGGTGCCGATGCTTCCCCACGG
TCCCACACTACCATCAGCCTAACTTGCCGATCATGATCGATGCACCCGCACATCGAAGGCACCAA
GGTACCGAT
Found at i:17702967 original size:354 final size:353
Alignment explanation
Indices: 17702224--17703128 Score: 857
Period size: 354 Copynumber: 2.6 Consensus size: 353
17702214 AGGCACCATG
** * * *
17702224 GTGCCGATACTTTTCGATGGTCCCGCACCATCATCGACCTTAGTTACCGATGGTGCCCGATGCTC
1 GTGCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTC
* * * * * * * * ** ** *
17702289 CTGGACATTCGAGGTACCAAGGTACCGATGCTTCTCGATGGTCCCGTACCACCATTGGCTTAAGT
66 C-GCACATCCAAGGCACCAAGGTGCCGATGCTTCCCCACGGTCCCACACCACCATCAGCCTAAGT
** * * ** * * *
17702354 CATCGATGGTGTCCGATGCTCTCGCACATCCAAGACACCAAGGTGTCGATGCTTTCTAATGGTGT
130 CATCGATCATGTCCGATGCACCCGCACATCCAAGACACCAAGGTACCGATGCTTCCCAATGGTGC
* *
17702419 CCGATGCTCTCGCACATCCAAGGCACCAAGGTATCGATGCTTCCCGATGGTCTCGCACTACCATC
195 CCGATGCTCTCGCACATCCAAGGCACCAAGGTATCGATGCTTCCCGATGGTCCCACACTACCATC
* * * * *
17702484 GGCCTTAGTTACCAATGGTGTCCGATGTTCCCGCACATCAAAGGCACCATGGTACCGATACTTCT
260 GGCCTGACTTACCAATGGTGTCCGATGCTCCCGCACATCAAAGGCACCAAGGTACCGATACTTCC
*
17702549 CGATGGTCCCGCACATCCGAGGGACCAAA
325 CGATAGTCCCGCACATCCGAGGGACCAAA
* ** * * *
17702578 GTGCCAATGA-TTCCTAATGGTCACGCACTACCATCGGCCTGAGTTACCGATGGTGTCCGATGCT
1 GTGCCGAT-ACTTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCT
* * **
17702642 CTCGCACATCCTAGGCACCAAGGTGCCGATGCTTCCCCACGGTCTCACATTACCATCAGCCTAAG
65 C-CGCACATCCAAGGCACCAAGGTGCCGATGCTTCCCCACGGTCCCACACCACCATCAGCCTAAG
** * ** *
17702707 TTGTCGATCATGAT-CGATGCACCCGCACATCGAAGGTACCAAGGTACCGATGCTTCCCGATGGT
129 TCATCGATCATG-TCCGATGCACCCGCACATCCAAGACACCAAGGTACCGATGCTTCCCAATGGT
** * * **
17702771 GCCCGATGCTCTCGCACATCTGAGGTACCAAGGTGTCGATGCTTTTCGATGGTCCCACACTACCA
193 GCCCGATGCTCTCGCACATCCAAGGCACCAAGGTATCGATGCTTCCCGATGGTCCCACACTACCA
* * * ** * *
17702836 TCGGCCTGACTTGCCGATGGTGTCCGATGCTCCCGCATATTGAAGGCACTAAGGTACCGATAGTT
258 TCGGCCTGACTTACCAATGGTGTCCGATGCTCCCGCACATCAAAGGCACCAAGGTACCGATACTT
* *
17702901 CCCGATAGTCCCGCACATTCGAGGTACC-AA
323 CCCGATAGTCCCGCACATCCGAGGGACCAAA
* ** * * *
17702931 GATGTCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTGTCGATAGTATTCGATGCT
1 G-TGCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCT
* * * * * ** * * * * *
17702996 CCCACACATCGAAGGCACCATGGTGTCGATACTTCCTGATGGTCTCACACCACCTTCGGCCTTAG
65 -CCGCACATCCAAGGCACCAAGGTGCCGATGCTTCCCCACGGTCCCACACCACCATCAGCCTAAG
* ** * * * * * * * *
17703061 TTA-CAGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGGTGCTTCCCGATGGT
129 TCATC-GATCATGTCCGATGCACCCGCACATCCAAGACACCAAGGTACCGATGCTTCCCAATGGT
17703125 -CCCG
193 GCCCG
17703129 TGCCACCATC
Statistics
Matches: 441, Mismatches: 102, Indels: 17
0.79 0.18 0.03
Matches are distributed among these distances:
353 9 0.02
354 428 0.97
355 4 0.01
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.24
Consensus pattern (353 bp):
GTGCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTC
CGCACATCCAAGGCACCAAGGTGCCGATGCTTCCCCACGGTCCCACACCACCATCAGCCTAAGTC
ATCGATCATGTCCGATGCACCCGCACATCCAAGACACCAAGGTACCGATGCTTCCCAATGGTGCC
CGATGCTCTCGCACATCCAAGGCACCAAGGTATCGATGCTTCCCGATGGTCCCACACTACCATCG
GCCTGACTTACCAATGGTGTCCGATGCTCCCGCACATCAAAGGCACCAAGGTACCGATACTTCCC
GATAGTCCCGCACATCCGAGGGACCAAA
Found at i:17703026 original size:129 final size:129
Alignment explanation
Indices: 17702783--17703031 Score: 302
Period size: 129 Copynumber: 1.9 Consensus size: 129
17702773 CCGATGCTCT
* * ** *
17702783 CGCACATCTGAGGTACCAAGGTGTCGATGCTTTTCGATGGTCCCACACTACCATCGGCCTGACTT
1 CGCACATCTGAGGTACCAAGATGTCGATACTTCCCGATGGTCCCACACCACCATCGGCCTGACTT
* * * * * * *
17702848 GCCGATGGTGTCCGATGCTCCCGCATATTGAAGGCACTAAGGTACCGATAGTTCCCGATAGTCC
66 GCCGATAGTATCCGATGCTCCCACACATCGAAGGCACCAAGGTACCGATACTTCCCGATAGTCC
* * *
17702912 CGCACAT-TCGAGGTACCAAGATGTCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTAGT
1 CGCACATCT-GAGGTACCAAGATGTCGATACTTCCCGATGGTCCCACACCACCATCGGCCTGACT
* * * **
17702976 TGTCGATAGTATTCGATGCTCCCACACATCGAAGGCACCATGGTGTCGATACTTCC
65 TGCCGATAGTATCCGATGCTCCCACACATCGAAGGCACCAAGGTACCGATACTTCC
17703032 TGATGGTCTC
Statistics
Matches: 99, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
128 1 0.01
129 98 0.99
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (129 bp):
CGCACATCTGAGGTACCAAGATGTCGATACTTCCCGATGGTCCCACACCACCATCGGCCTGACTT
GCCGATAGTATCCGATGCTCCCACACATCGAAGGCACCAAGGTACCGATACTTCCCGATAGTCC
Found at i:17704008 original size:12 final size:12
Alignment explanation
Indices: 17703991--17704021 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
17703981 CTTTGACTCT
17703991 CTTTTCAAAGTC
1 CTTTTCAAAGTC
17704003 CTTTTCAAAGTC
1 CTTTTCAAAGTC
17704015 CTTTTCA
1 CTTTTCA
17704022 TCTTTCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.26, G:0.06, T:0.45
Consensus pattern (12 bp):
CTTTTCAAAGTC
Found at i:17705689 original size:43 final size:43
Alignment explanation
Indices: 17705629--17706617 Score: 873
Period size: 43 Copynumber: 23.4 Consensus size: 43
17705619 TTTTTTAGCT
* *
17705629 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATAGTGTT
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * *
17705672 CGATGCTCCCGCACATCCGAGGTACCAAGGTAG-CGATGGTGAC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGT-GCCGATGGTGTC
* * * *
17705715 CGAGGCTCCAGCACATCCGAGGCACCAAGGTACCGATGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * *
17705758 CGAGGCTCCCGTACATCCGAGGCACCAAGGTGCCGATGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * * * * *
17705801 CGATGCTTCCGTACAACTAGGGTACCAAAGTGCCGATGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * *
17705844 CGATGCTTCCACACATCCAAGGCACCAAGGTACCGATGGTGTT
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* *
17705887 CGATGCTCCCG-A-A--C-A---TCCAAGGTACCGATGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * * *
17705922 TGAGGCTCCCGCACATCCGAGGCACGAAGGTGCTGATGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * *
17705965 CGATGCTACCGCACATCGAAGGCACCAAGGTGTCAATGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * * *
17706008 CGA-GGTACCCGCACATCTAAGGCACTAAGGTACTGATGGTGTC
1 CGATGCT-CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * * * *
17706051 TGAGGCTTCCGCACATCCGAGGCACGAAGGTGCCGATGGTATC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * *
17706094 CGATGCTCCCGCACATCCAAGGCACCAAAGTGTCGATGGTGTT
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * ** * * * * *
17706137 CGA-GGTACCCACACATCTGAGACACTAAGGTACTGATGGTATC
1 CGATGCT-CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * *
17706180 CGAGGCTCCCGCACATTCGAGGCACCAAGGTACCGATGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * *
17706223 CGATGCTGCCGCACAACCAGGGCACCAAGGTACCGATGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * *
17706266 TGATGCTCCCACACATCCAAGGGACCAAGGTGCCTATGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * *
17706309 CGATACTCCCGCACAT--------CCAAGGTGCCGATGATGTT
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * ** *
17706344 CGAGGCTCCCGCACATCCGAGGCACCAAGGTGACGATACTGTT
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * * *
17706387 CGATGCTCTCGTACATCCGAGGCACTAAGGTTCCGATGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* *** * *
17706430 TGATGCTCCCGCACATTTGAGGCACTAAGGTGTCGATGGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * * *
17706473 CGATGCTGCCGCACAACCAAGGCACCAATGTACCGATGGTATC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* *
17706516 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCTGATAGTGTC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* * * * ** *
17706559 TGAGGCTCCCGTACATCCGAGGCACCAAGGTGCTAATGGTATC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
* *
17706602 CGAGGCTCTCGCACAT
1 CGATGCTCCCGCACAT
17706618 GTCTGAAACA
Statistics
Matches: 760, Mismatches: 164, Indels: 44
0.79 0.17 0.05
Matches are distributed among these distances:
35 57 0.08
36 1 0.00
37 1 0.00
38 1 0.00
39 2 0.00
40 1 0.00
41 1 0.00
42 5 0.01
43 686 0.90
44 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (43 bp):
CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
Found at i:17705908 original size:35 final size:35
Alignment explanation
Indices: 17705868--17705939 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
17705858 ATCCAAGGCA
*
17705868 CCAAGGTACCGATGGTGT-TCGATGCTCCCGAACAT
1 CCAAGGTACCGATGGTGTCT-GAGGCTCCCGAACAT
*
17705903 CCAAGGTACCGATGGTGTCTGAGGCTCCCGCACAT
1 CCAAGGTACCGATGGTGTCTGAGGCTCCCGAACAT
17705938 CC
1 CC
17705940 GAGGCACGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 33 0.97
36 1 0.03
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (35 bp):
CCAAGGTACCGATGGTGTCTGAGGCTCCCGAACAT
Found at i:17706353 original size:35 final size:35
Alignment explanation
Indices: 17706290--17706361 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
17706280 ATCCAAGGGA
* * *
17706290 CCAAGGTGCCTATGGTGTCCGATACTCCCGCACAT
1 CCAAGGTGCCGATGATGTCCGAGACTCCCGCACAT
* *
17706325 CCAAGGTGCCGATGATGTTCGAGGCTCCCGCACAT
1 CCAAGGTGCCGATGATGTCCGAGACTCCCGCACAT
17706360 CC
1 CC
17706362 GAGGCACCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.19, C:0.35, G:0.25, T:0.21
Consensus pattern (35 bp):
CCAAGGTGCCGATGATGTCCGAGACTCCCGCACAT
Found at i:17707382 original size:43 final size:43
Alignment explanation
Indices: 17707334--17707469 Score: 118
Period size: 43 Copynumber: 3.2 Consensus size: 43
17707324 CGGCCTAAGT
17707334 TACCGATGGTGTCTGATGCTCTCGCACATCCAAGGCACCAAGG
1 TACCGATGGTGTCTGATGCTCTCGCACATCCAAGGCACCAAGG
** * * ** *
17707377 TACCGATACT-TCTCGATGGTCTCGCACCA-CCATTGGC-CTTAGT
1 TACCGATGGTGTCT-GATGCTCTCGCA-CATCCA-AGGCACCAAGG
* * *
17707420 TACCGATGGTGTCCGATGCT-TACGCACATCGAAGGCACCATGG
1 TACCGATGGTGTCTGATGCTCT-CGCACATCCAAGGCACCAAGG
17707463 TACCGAT
1 TACCGAT
17707470 ACTTCACGAT
Statistics
Matches: 69, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
42 9 0.13
43 53 0.77
44 7 0.10
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (43 bp):
TACCGATGGTGTCTGATGCTCTCGCACATCCAAGGCACCAAGG
Found at i:17707403 original size:86 final size:86
Alignment explanation
Indices: 17707250--17708091 Score: 673
Period size: 86 Copynumber: 9.8 Consensus size: 86
17707240 TTTTTTTGGC
* * * * * * * *
17707250 CCGATAGTGTCCCATGCTCCCGCACAT-GCAAGGCACCAAGGTGCCAATGCTTCCCAACGGTCCC
1 CCGATGGTGTCCGATGCTCCCGCACATCG-AAGGCACCAAGGTGCCGATACTTCTCGATGGTCTC
*
17707314 GCACTACCATCGGCCTAAGTTA
65 GCACCACCATCGGCCTAAGTTA
* * * *
17707336 CCGATGGTGTCTGATGCTCTCGCACATCCAAGGCACCAAGGTACCGATACTTCTCGATGGTCTCG
1 CCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGTGCCGATACTTCTCGATGGTCTCG
* *
17707401 CACCACCATTGGCCTTAGTTA
66 CACCACCATCGGCCTAAGTTA
** * * *
17707422 CCGATGGTGTCCGATGCTTACGCACATCGAAGGCACCATGGTACCGATACTTCACGATGGTCTCG
1 CCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGTGCCGATACTTCTCGATGGTCTCG
* * *
17707487 TACCACCATCGACCTTAGTTA
66 CACCACCATCGGCCTAAGTTA
* * * * * * * *
17707508 TCGATGGTG-CTCGATGCTCTCGTACATCTG-AGGCACCACGGTGTCAATGCTTCCCGATGGTCT
1 CCGATGGTGTC-CGATGCTCCCGCACATC-GAAGGCACCAAGGTGCCGATACTTCTCGATGGTCT
* *
17707571 CGCACCACCATCAGCCTAAGTTG
64 CGCACCACCATCGGCCTAAGTTA
* * * * *** * *
17707594 CCGATGGTGTCCAATGCTCCCGCATATCGAAGGCACCAAGGTGTCGATACTTTTCGCCAGTCCCA
1 CCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGTGCCGATACTTCTCGATGGTCTCG
* *
17707659 CACCACCATCGACCTTAGTTA
66 CACCACCATCGGCCTAAGTTA
* * * *
17707680 TCGATGGTGTCTGATGCTCCCGCACAAT-GAAGGCACCATGGTGCGGATACTT-TCCGATGGTCT
1 CCGATGGTGTCCGATGCTCCCGCAC-ATCGAAGGCACCAAGGTGCCGATACTTCT-CGATGGTCT
* * * * * *
17707743 CGTA-CATCGA-AGGCACCATGGTA
64 CGCACCA-CCATCGGC-CTAAGTTA
** * * * *
17707766 CCGATACT-TCAAGATGGTCCCGGACATTCG-AGGCACCAAGGTGCCGATGA-TTC-CTTATGGT
1 CCGATGGTGTC-CGATGCTCCCGCACA-TCGAAGGCACCAAGGTGCCGAT-ACTTCTC-GATGGT
* *
17707827 CTCGCACCACCATCGGCTTAAGTTG
62 CTCGCACCACCATCGGCCTAAGTTA
* * ** ** * *
17707852 TCGATGGTGTCCGCTGCTCTTGCACATCCTAGGCACCAAGGTGCCGATGCTTC-CTGATGGTCTT
1 CCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGTGCCGATACTTCTC-GATGGTCTC
* *
17707916 GCACCACCATTGGTCTAAGTTA
65 GCACCACCATCGGCCTAAGTTA
* ** * * * * * *
17707938 TCGATGGTGTTTGATGCTCCCGCACATTGAAAGCACCAAGGTACCGATGCTTCTAGATGTTCTCG
1 CCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGTGCCGATACTTCTCGATGGTCTCG
* *
17708003 CACCACCATCGGCCTTAGTTG
66 CACCACCATCGGCCTAAGTTA
** * * ** * *
17708024 CTAATGGTGTCCGATGCTCCCGTACATCGAAAGCACCGTGGTGCTGATACTTCTCGATGGTCCCG
1 CCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGTGCCGATACTTCTCGATGGTCTCG
17708089 CAC
66 CAC
17708092 ATCCGAGGCA
Statistics
Matches: 591, Mismatches: 144, Indels: 42
0.76 0.19 0.05
Matches are distributed among these distances:
85 13 0.02
86 565 0.96
87 13 0.02
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (86 bp):
CCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGTGCCGATACTTCTCGATGGTCTCG
CACCACCATCGGCCTAAGTTA
Found at i:17707772 original size:43 final size:44
Alignment explanation
Indices: 17707708--17707813 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 44
17707698 CCCGCACAAT
* * * *
17707708 GAAGGCACCATGGTGCGGATACTTTC-CGATGGTCTCGTACA-TC
1 GAAGGCACCATGGTGCCGATAC-TTCAAGATGGTCCCGGACATTC
*
17707751 GAAGGCACCATGGTACCGATACTTCAAGATGGTCCCGGACATTC
1 GAAGGCACCATGGTGCCGATACTTCAAGATGGTCCCGGACATTC
*
17707795 G-AGGCACCAAGGTGCCGAT
1 GAAGGCACCATGGTGCCGAT
17707814 GATTCCTTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 3 0.06
43 48 0.89
44 3 0.06
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (44 bp):
GAAGGCACCATGGTGCCGATACTTCAAGATGGTCCCGGACATTC
Found at i:17707917 original size:43 final size:42
Alignment explanation
Indices: 17707710--17707919 Score: 109
Period size: 43 Copynumber: 4.9 Consensus size: 42
17707700 CGCACAATGA
* * * * **
17707710 AGGCACCATGGTGCGGATACTTTCCGATGGTCTCGTACATCGA
1 AGGCACCAAGGTGCCGATGC-TTCCGATGGTCTCGCACATCCT
* * * * * * * *
17707753 AGGCACCATGGTACCGATACTTCAAGATGGTCCCGGACATTCG
1 AGGCACCAAGGTGCCGATGCTTC-CGATGGTCTCGCACATCCT
* *
17707796 AGGCACCAAGGTGCCGATGATTCCTTATGGTCTCGCACCA-CCAT
1 AGGCACCAAGGTGCCGATGCTTCC-GATGGTCTCGCA-CATCC-T
* ** * * * * * *
17707840 CGGC-TTAAGTTGTCGATGGTGTCCGCTGCTCTTGCACATCCT
1 AGGCACCAAGGTGCCGATGCT-TCCGATGGTCTCGCACATCCT
*
17707882 AGGCACCAAGGTGCCGATGCTTCCTGATGGTCTTGCAC
1 AGGCACCAAGGTGCCGATGCTTCC-GATGGTCTCGCAC
17707920 CACCATTGGT
Statistics
Matches: 123, Mismatches: 36, Indels: 16
0.70 0.21 0.09
Matches are distributed among these distances:
42 12 0.10
43 103 0.84
44 8 0.07
ACGTcount: A:0.20, C:0.29, G:0.26, T:0.25
Consensus pattern (42 bp):
AGGCACCAAGGTGCCGATGCTTCCGATGGTCTCGCACATCCT
Found at i:17708451 original size:3 final size:3
Alignment explanation
Indices: 17708445--17708469 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
17708435 AAATCAAATT
17708445 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
17708470 TTTGCTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:17713199 original size:42 final size:42
Alignment explanation
Indices: 17713153--17713238 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
17713143 AACTTTTTCA
*
17713153 TTGTGCTACCAGCAGACATTAGAATGTTTAAAACAGGGACAC
1 TTGTGCTACCAGCAGACATTAGAATGTCTAAAACAGGGACAC
*
17713195 TTGTGCTACCAGCAGACATTAGAATGTCTGAAACAGGGACAC
1 TTGTGCTACCAGCAGACATTAGAATGTCTAAAACAGGGACAC
17713237 TT
1 TT
17713239 TATTTTTAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (42 bp):
TTGTGCTACCAGCAGACATTAGAATGTCTAAAACAGGGACAC
Found at i:17713312 original size:43 final size:43
Alignment explanation
Indices: 17713249--17713849 Score: 440
Period size: 43 Copynumber: 14.3 Consensus size: 43
17713239 TATTTTTAGC
* * * *
17713249 TCGATGCTTCCGCATATCCAAGGCACCAAGGTACCGATGGTGT
1 TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
* ** *
17713292 TTGATGCTCCCACACATCCAAGGCACCAAGGTGTTGACGGTGT
1 TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
* * *
17713335 TCGATGCTCCCACACATCCAAGGTACCAAGGTGTCTATGGTGT
1 TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
* *** * * *
17713378 CCGACATTCCCGCACATCCAAGGCACCAA-GTTCTGATGGTGT
1 TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
* * * ** * ** * *
17713420 CCAAGGCTCCTGCACAACCAAGAAACCAAGGTACCGATAGTGT
1 TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
* *
17713463 TCGACGCTCCTACACATCCAAGGCACCAAGGTGCCGAT-GTGT
1 TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
* * * *
17713505 CCAATGCTCCCACATATCTAAGGCACCAAGGTGCCGATGGTGT
1 TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
* * * *
17713548 TTGATGCTCCCTCATATCCAAGGCACCAAGGTGCCAATGGTGT
1 TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
** * * * *
17713591 TCGACACTCTCGCACATCTAAGGCACCAAGGTACCGATGGTGT
1 TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
* * * * * * * *
17713634 TCGACGCTCTCGCACATCCACA-GTACCAAGGTACCGGTGCTGC
1 TCGATGCTCCCACACATCCA-AGGCACCAAGGTGCCGATGGTGT
* * * *
17713677 CCGATGCACCCGCACAAT-GAAGGCACCAAGGTGCCGA------
1 TCGATGCTCCCACAC-ATCCAAGGCACCAAGGTGCCGATGGTGT
* * *
17713714 T--A--C-ACCAGCACATCCAAGGCACCAAGATACCGATGGTGT
1 TCGATGCTCCCA-CACATCCAAGGCACCAAGGTGCCGATGGTGT
* * *
17713753 TTGATGCTCCCATACATCCAAGGCACCAAGATGCCGATGGTGT
1 TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
* * ** ** *
17713796 CCGAGGCTCCTGCTTATCCAAGGCACCAAGGTGCCAATGGTGT
1 TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
*
17713839 CCGATGCTCCC
1 TCGATGCTCCC
17713850 GTAAAAATAT
Statistics
Matches: 442, Mismatches: 98, Indels: 36
0.77 0.17 0.06
Matches are distributed among these distances:
32 4 0.01
33 20 0.05
35 1 0.00
39 1 0.00
41 1 0.00
42 67 0.15
43 342 0.77
44 6 0.01
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (43 bp):
TCGATGCTCCCACACATCCAAGGCACCAAGGTGCCGATGGTGT
Found at i:17713479 original size:85 final size:84
Alignment explanation
Indices: 17713266--17713653 Score: 325
Period size: 85 Copynumber: 4.5 Consensus size: 84
17713256 TTCCGCATAT
* * * *
17713266 CCAAGGCACCAAGGTACCGATGGTGTTTGATGCTCCCACACATCCAAGGCACCAAGGTGT-TGAC
1 CCAAGGAACCAAGGTACCGATGGTGTTCGACGCTCCCACACATCCAAGGCACCAAGGT-TCTGAT
* *
17713330 GGTGTTCGATGCTCCCACACA
65 GGTGTCCAATGCTCCCACA-A
* ** * * ** *
17713351 TCCAAGGTACCAAGGTGTCTATGGTGTCCGACATTCCCGCACATCCAAGGCACCAA-GTTCTGAT
1 -CCAAGGAACCAAGGTACCGATGGTGTTCGACGCTCCCACACATCCAAGGCACCAAGGTTCTGAT
*
17713415 GGTGTCCAAGGCTCCTGCACAA
65 GGTGTCCAATGCTCC--CACAA
* * * * *
17713437 CCAAGAAACCAAGGTACCGATAGTGTTCGACGCTCCTACACATCCAAGGCACCAAGGTGCCGAT-
1 CCAAGGAACCAAGGTACCGATGGTGTTCGACGCTCCCACACATCCAAGGCACCAAGGTTCTGATG
17713501 GTGTCCAATGCTCCCACATA
66 GTGTCCAATGCTCCCACA-A
* * * * * * * * **
17713521 TCTAAGGCACCAAGGTGCCGATGGTGTTTGATGCTCCCTCATATCCAAGGCACCAAGGTGCCAAT
1 -CCAAGGAACCAAGGTACCGATGGTGTTCGACGCTCCCACACATCCAAGGCACCAAGGTTCTGAT
* * *
17713586 GGTGTTCGACACT-CTCGCACAT
65 GGTG-TC--CAATGCTCCCACAA
* * * *
17713608 CTAAGGCACCAAGGTACCGATGGTGTTCGACGCTCTCGCACATCCA
1 CCAAGGAACCAAGGTACCGATGGTGTTCGACGCTCCCACACATCCA
17713654 CAGTACCAAG
Statistics
Matches: 244, Mismatches: 48, Indels: 20
0.78 0.15 0.06
Matches are distributed among these distances:
83 4 0.02
84 2 0.01
85 127 0.52
86 95 0.39
87 6 0.02
88 7 0.03
89 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (84 bp):
CCAAGGAACCAAGGTACCGATGGTGTTCGACGCTCCCACACATCCAAGGCACCAAGGTTCTGATG
GTGTCCAATGCTCCCACAA
Found at i:17713557 original size:128 final size:129
Alignment explanation
Indices: 17713252--17713669 Score: 395
Period size: 128 Copynumber: 3.3 Consensus size: 129
17713242 TTTTAGCTCG
* *
17713252 ATGCTTCCGCATATCCAAGGCACCAAGGTACCGATGGTGTTTGATGCTCCCACACATCCAAGGCA
1 ATGCTCCCGCATATCCAAGGCACCAAGGTACCGATGGTGTTTGATGCT-CCTCACATCCAAGGCA
** * * * * * *
17713317 CCAAGGTGTTGACGGTGTTCGATGCTCCCACACATCCAAGGTACCAAGGTGTCTATGGTGTCCGA
65 CCAAGGTGCCGATGGTGTTCGACGCTCCTACACATCCAAGGCACCAAGGTGCCGAT-GTGTCCGA
17713382 C
129 C
* * * *** * * **
17713383 AT--TCCCGCACATCCAAGGCACCAA-GTTCTGATGGTGTCCAAGGCTCCTGCACAACCAAGAAA
1 ATGCTCCCGCATATCCAAGGCACCAAGGTACCGATGGTGTTTGATGCTCCT-CACATCCAAGGCA
* *
17713445 CCAAGGTACCGATAGTGTTCGACGCTCCTACACATCCAAGGCACCAAGGTGCCGATGTGTCC-A-
65 CCAAGGTGCCGATGGTGTTCGACGCTCCTACACATCCAAGGCACCAAGGTGCCGATGTGTCCGAC
* * * *
17713508 ATGCTCCCACATATCTAAGGCACCAAGGTGCCGATGGTGTTTGATGCTCCCTCATATCCAAGGCA
1 ATGCTCCCGCATATCCAAGGCACCAAGGTACCGATGGTGTTTGATGCT-CCTCACATCCAAGGCA
* * * * * *
17713573 CCAAGGTGCCAATGGTGTTCGACACT-CTCGCACATCTAAGGCACCAAGGTACCGATGGTGTTCG
65 CCAAGGTGCCGATGGTGTTCGACGCTCCT-ACACATCCAAGGCACCAAGGTGCCGAT-GTGTCCG
17713637 AC
128 AC
* * *
17713639 --GCTCTCGCACATCCACA-GTACCAAGGTACCG
1 ATGCTCCCGCATATCCA-AGGCACCAAGGTACCG
17713670 GTGCTGCCCG
Statistics
Matches: 228, Mismatches: 49, Indels: 22
0.76 0.16 0.07
Matches are distributed among these distances:
125 2 0.01
126 1 0.00
127 29 0.13
128 141 0.62
129 51 0.22
130 2 0.01
131 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (129 bp):
ATGCTCCCGCATATCCAAGGCACCAAGGTACCGATGGTGTTTGATGCTCCTCACATCCAAGGCAC
CAAGGTGCCGATGGTGTTCGACGCTCCTACACATCCAAGGCACCAAGGTGCCGATGTGTCCGAC
Found at i:17714666 original size:43 final size:42
Alignment explanation
Indices: 17714529--17714667 Score: 161
Period size: 43 Copynumber: 3.2 Consensus size: 42
17714519 CGGCCTATGT
*
17714529 TGTCGATGGTGTTTGATGCTCCGGCACATCCAAGGCACCAAGG
1 TGTCGATGGTGTCTGATGCTCC-GCACATCCAAGGCACCAAGG
* * * * * * * *
17714572 TGTTGATGCTGCCCGACGCTCCCACACATCTAAGGCACCAAAG
1 TGTCGATGGTGTCTGATGCT-CCGCACATCCAAGGCACCAAGG
*
17714615 TGCCGATGGTGTCTGATGCTCTCGCACATCCAAGGCACCAAGG
1 TGTCGATGGTGTCTGATGCTC-CGCACATCCAAGGCACCAAGG
17714658 TGTCGATGGT
1 TGTCGATGGT
17714668 TCCCAATGGT
Statistics
Matches: 75, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
42 1 0.01
43 72 0.96
44 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (42 bp):
TGTCGATGGTGTCTGATGCTCCGCACATCCAAGGCACCAAGG
Found at i:17714684 original size:43 final size:43
Alignment explanation
Indices: 17714552--17714830 Score: 117
Period size: 43 Copynumber: 6.5 Consensus size: 43
17714542 TGATGCTCCG
* * * * * *
17714552 GCACATCCAAGGCACCAAGGTGTTGATGCTGCCCGACGCTCCC
1 GCACATCCAAGGCACCAAGGTGTCGATGGTTCCCGATGGTTCC
* * * * * *
17714595 ACACATCTAAGGCACCAAAGTGCCGATGGTGT-CTGAT-GCTCTC
1 GCACATCCAAGGCACCAAGGTGTCGATGGT-TCCCGATGGTTC-C
*
17714638 GCACATCCAAGGCACCAAGGTGTCGATGGTTCCCAATGGTTCC
1 GCACATCCAAGGCACCAAGGTGTCGATGGTTCCCGATGGTTCC
* * * ** * *
17714681 GCACCA-CCACTGGC-CTAAGTTACCAATGGTGT-CCGATGCTAT-C
1 GCA-CATCCA-AGGCACCAAGGTGTCGATGGT-TCCCGATGGT-TCC
* * *** *
17714724 GCACATCAAAGGCACCAAGGTGTCGATGCTTCTTAATGGTCCC
1 GCACATCCAAGGCACCAAGGTGTCGATGGTTCCCGATGGTTCC
* ** * * *
17714767 CCATCA-CCATCG-ACCTAAGATATCGATGGTGT-CCGATGGTCCC
1 GCA-CATCCAAGGCACC-AAGGTGTCGATGGT-TCCCGATGGTTCC
*
17714810 GCACATCTAAGGCACCAAGGT
1 GCACATCCAAGGCACCAAGGT
17714831 ACTGATGCTT
Statistics
Matches: 164, Mismatches: 55, Indels: 34
0.65 0.22 0.13
Matches are distributed among these distances:
42 13 0.08
43 135 0.82
44 16 0.10
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.21
Consensus pattern (43 bp):
GCACATCCAAGGCACCAAGGTGTCGATGGTTCCCGATGGTTCC
Found at i:17714861 original size:86 final size:86
Alignment explanation
Indices: 17714618--17714889 Score: 300
Period size: 86 Copynumber: 3.2 Consensus size: 86
17714608 ACCAAAGTGC
* * * *
17714618 CGATGGTGTCTGATGCTCTCGCACATCCAAGGCACCAAGGTGTCGATGGTTCCCAATGGT-TCCG
1 CGATGGTGTCCGATGCTCTCGCACATCAAAGGCACCAAGGTGTCGATGCTTCCTAATGGTCT-CG
*
17714682 CACCACCA-CTGGCCTAAGTTAC
65 CACCACCATC-GGCCTAAGTTAT
* * * * *
17714704 CAATGGTGTCCGATGCTATCGCACATCAAAGGCACCAAGGTGTCGATGCTTCTTAATGGTCCCCC
1 CGATGGTGTCCGATGCTCTCGCACATCAAAGGCACCAAGGTGTCGATGCTTCCTAATGGTCTCGC
* * *
17714769 ATCACCATCGACCTAAGATAT
66 ACCACCATCGGCCTAAGTTAT
* * * * *
17714790 CGATGGTGTCCGATGGTCCCGCACATCTAAGGCACCAAGGT-ACTGATGCTTCCTGATGGTCTCG
1 CGATGGTGTCCGATGCTCTCGCACATCAAAGGCACCAAGGTGTC-GATGCTTCCTAATGGTCTCG
*
17714854 TACCACCATCGGCCTATA-TTAT
65 CACCACCATCGGCCTA-AGTTAT
*
17714876 CGATTGTGTCCGAT
1 CGATGGTGTCCGAT
17714890 CCATTCCTCC
Statistics
Matches: 154, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
85 1 0.01
86 151 0.98
87 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.25
Consensus pattern (86 bp):
CGATGGTGTCCGATGCTCTCGCACATCAAAGGCACCAAGGTGTCGATGCTTCCTAATGGTCTCGC
ACCACCATCGGCCTAAGTTAT
Found at i:17715493 original size:47 final size:46
Alignment explanation
Indices: 17715424--17715515 Score: 166
Period size: 47 Copynumber: 2.0 Consensus size: 46
17715414 CAGAAGAAAC
*
17715424 AATGTGCTTTAACATGGAATTAGTTATACCTTTAAAAAAAATTTCAT
1 AATGTGCTCTAACATGGAATTAGTTATACCTTT-AAAAAAATTTCAT
17715471 AATGTGCTCTAACATGGAATTAGTTATACCTTTAAAAAAATTTCA
1 AATGTGCTCTAACATGGAATTAGTTATACCTTTAAAAAAATTTCA
17715516 AAAATATACG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 12 0.27
47 32 0.73
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (46 bp):
AATGTGCTCTAACATGGAATTAGTTATACCTTTAAAAAAATTTCAT
Found at i:17719512 original size:18 final size:17
Alignment explanation
Indices: 17719485--17719518 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
17719475 TCACAGGTTC
17719485 ACCTACGGAAACCTTGA
1 ACCTACGGAAACCTTGA
17719502 ACCTGACGGAAACCTTG
1 ACCT-ACGGAAACCTTG
17719519 TTACGACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (17 bp):
ACCTACGGAAACCTTGA
Found at i:17725897 original size:43 final size:43
Alignment explanation
Indices: 17725849--17726411 Score: 439
Period size: 43 Copynumber: 13.1 Consensus size: 43
17725839 TATTTTTAGC
* * * * *
17725849 CCGATACTCCCGTACATCCAAGCCACCAAGGTACCGATGGTCT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
* ** * *
17725892 CCGATACTCCAACACATCCAAGGCATCAAGGTGTCGATGGTGT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
** * * **
17725935 CCGATGCTCTTGTACATCCATGGCACCAAGGTTTCGATGGTGT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
* * * * *
17725978 TCGATGCTCCCGCACATCCAAGGCACTAAGGTGCTGAAGGTGC
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
* ** * ***
17726021 CCGACGCTCTTGCAAATCCAAGGCACCAAGGTATTGATGGTGT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
* * **
17726064 CTGACGCTCCCGCACATCCAAGGCACCAAGGTATCGATGGTGT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
* * *
17726107 CTGATGCTCCCACACATCC-AGGTACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
* * * *
17726149 CCGACGCTCTCGCACATCCAAGGTACCAAGGTGCCGATGTTGT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
** * * * ** * ** *
17726192 TTGACGCTCTCGCACTTTTAAGGCATCAAGGTGTTGGTGGTGT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
* * * * *
17726235 TCGATGCTCCCGTACATCCAAGGCAACAAGGTGTCGGTGGTGT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
* * * *
17726278 CC-AAGACTCTCGCACATCCAAGGCACCAAGGTACTGATGGTGT
1 CCGATG-CTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
* * * * * **
17726321 CCAATGCTCTCGTACATCCAACG-ATCCAAGGTACCGATATTGT
1 CCGATGCTCCCGCACATCCAAGGCA-CCAAGGTGCCGATGGTGT
* * * * *
17726364 CCGAGGCTCCCGCATATCAAAGGCACCAATGTGTCGATGGTGT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
*
17726407 TCGAT
1 CCGAT
17726412 TCTCTCACGA
Statistics
Matches: 414, Mismatches: 101, Indels: 10
0.79 0.19 0.02
Matches are distributed among these distances:
42 38 0.09
43 373 0.90
44 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (43 bp):
CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
Found at i:17726373 original size:129 final size:129
Alignment explanation
Indices: 17725849--17726406 Score: 507
Period size: 129 Copynumber: 4.3 Consensus size: 129
17725839 TATTTTTAGC
* * * * * *
17725849 CCGATACTCCCGTACATCCAAGCCACCAAGGTACCGATGGTCTCCGATA-CTC-CAACACATCCA
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGA-AGCTCTC-GCACATCCA
* * * * * * *
17725912 AGGCATCAAGGT-GTCGATGGTGTCCGATGCTCTTGTACATCCATGGCACCAAGGTTTCGATGGT
64 AGGCACCAAGGTACT-GATGGTGTCCGACGCTCTCGCACATCCAAGGCACCAAGGTATCGATGGT
17725976 GT
128 GT
* * * * * * * *
17725978 TCGATGCTCCCGCACATCCAAGGCACTAAGGTGCTGAAGGTGCCCGACGCTCTTGCAAATCCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGAAGCTCTCGCACATCCAAG
* * *
17726043 GCACCAAGGTATTGATGGTGTCTGACGCTCCCGCACATCCAAGGCACCAAGGTATCGATGGTGT
66 GCACCAAGGTACTGATGGTGTCCGACGCTCTCGCACATCCAAGGCACCAAGGTATCGATGGTGT
* * * *
17726107 CTGATGCTCCCACACATCC-AGGTACCAAGGTGCCGATGGTGTCCGACGCTCTCGCACATCCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGAAGCTCTCGCACATCCAAG
* * * * ** * ** * * * *
17726171 GTACCAAGGTGCCGATGTTGTTTGACGCTCTCGCACTTTTAAGGCATCAAGGTGTTGGTGGTGT
66 GCACCAAGGTACTGATGGTGTCCGACGCTCTCGCACATCCAAGGCACCAAGGTATCGATGGTGT
* * * * *
17726235 TCGATGCTCCCGTACATCCAAGGCAACAAGGTGTCGGTGGTGTCC-AAGACTCTCGCACATCCAA
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGAAG-CTCTCGCACATCCAA
* * * * * **
17726299 GGCACCAAGGTACTGATGGTGTCCAATGCTCTCGTACATCCAACG-ATCCAAGGTACCGATATTG
65 GGCACCAAGGTACTGATGGTGTCCGACGCTCTCGCACATCCAAGGCA-CCAAGGTATCGATGGTG
17726363 T
129 T
* * * * *
17726364 CCGAGGCTCCCGCATATCAAAGGCACCAATGTGTCGATGGTGT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
17726407 TCGATTCTCT
Statistics
Matches: 339, Mismatches: 84, Indels: 12
0.78 0.19 0.03
Matches are distributed among these distances:
128 106 0.31
129 232 0.68
130 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (129 bp):
CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGAAGCTCTCGCACATCCAAG
GCACCAAGGTACTGATGGTGTCCGACGCTCTCGCACATCCAAGGCACCAAGGTATCGATGGTGT
Found at i:17727836 original size:43 final size:43
Alignment explanation
Indices: 17727425--17728087 Score: 224
Period size: 43 Copynumber: 15.4 Consensus size: 43
17727415 ATGGTCCTGT
* ** ** *
17727425 ACATCCAAGGCACCAAGGTACCGATACTACCCGATGCTCCCGC
1 ACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCTCGC
* ** * *
17727468 ACATCCAAGGCACCAAGGTGCCGATGCTACCCAATGCTCTAGC
1 ACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCTCGC
* *
17727511 ACATTCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTC-CTAC
1 ACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCTC-GC
* * * * * *
17727554 ACATCCAAGGCATCAAGGTGTCTATGCT-TCTCGATGGTCTTGC
1 ACATCCAAGGCACCAAGGTGCCGATGGTGTC-CGATGCTCTCGC
** * *
17727597 ATCA-CCATCG-ACCTAAGTTG-CAATGGTGTCCGATGCTC-CTGC
1 A-CATCCAAGGCACC-AAGGTGCCGATGGTGTCCGATGCTCTC-GC
* ** * * *
17727639 ACATCCAAGGCACCAAGGT-ACGAAT-GCATCTCGATGGTCCCAC
1 ACATCCAAGGCACCAAGGTGCCG-ATGGTGTC-CGATGCTCTCGC
* * * * *
17727682 ACCA-CCATCGG-TCTATGTTAG-CGATGGTGTCCGATGCTCTCGC
1 A-CATCCA-AGGCACCAAGGT-GCCGATGGTGTCCGATGCTCTCGC
* ** * * *
17727725 ACATCCAAGGCACCAAGGTGTCGATACTTTTCGATGGTCTCGC
1 ACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCTCGC
* * * * * *
17727768 AC-TACCATCGGC-CTAAGTTACCGATGGTGTCTGATGCTCTCGA
1 ACAT-CCA-AGGCACCAAGGTGCCGATGGTGTCCGATGCTCTCGC
* *
17727811 ACATCCAAGGCACCAAGGTGCCGATGCT-TCTCAATAG-TC-C-C
1 ACATCCAAGGCACCAAGGTGCCGATGGTGTC-CGAT-GCTCTCGC
* * * * *
17727852 ATA-CCACTATCGGC-CTAAGTTGTCGATGGTGTCCGATGCTCCCGC
1 ACATCCA--A--GGCACCAAGGTGCCGATGGTGTCCGATGCTCTCGC
* * * * * * *
17727897 ACATCCAAGGCACCAAGGTACCCATGTTTTTCGATGGTCCCGC
1 ACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCTCGC
* * * ** * * *
17727940 ACCA-CCATTGGC-CTAAGTTATCAATGGTGTTCGATGCTCCCGC
1 A-CATCCA-AGGCACCAAGGTGCCGATGGTGTCCGATGCTCTCGC
* ** *
17727983 ACATCCAAGGCACCAAGGTGCTGATTAT-TCCTGATGGTCTCGC
1 ACATCCAAGGCACCAAGGTGCCGATGGTGTCC-GATGCTCTCGC
** * * * *
17728026 ACCA-CCACCG-ACCTAAGTTACCGATAGTGTCCAATGCTAC-CGC
1 A-CATCCAAGGCACC-AAGGTGCCGATGGTGTCCGATGCT-CTCGC
*
17728069 ACATCCAAGGCACTAAGGT
1 ACATCCAAGGCACCAAGGT
17728088 TCAGATGCTT
Statistics
Matches: 447, Mismatches: 125, Indels: 96
0.67 0.19 0.14
Matches are distributed among these distances:
40 3 0.01
41 4 0.01
42 60 0.13
43 337 0.75
44 37 0.08
45 3 0.01
46 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (43 bp):
ACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCTCGC
Found at i:17727891 original size:172 final size:171
Alignment explanation
Indices: 17727457--17729352 Score: 1064
Period size: 172 Copynumber: 10.8 Consensus size: 171
17727447 GATACTACCC
* * * ** * *
17727457 GATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTACCCAATGCTCTAGCA-CATTCA-AG
1 GATGCT-CCGCACATCCAAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCA-CCATCG
* * * ** * * *
17727520 GCACCAAGGTGCCGATGGTGTCCGATGCTCCTACACATCCAAGGCATCAAGGTGTCTATGCTTCT
64 GC-CTAAGTTGTCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGTCGATGCTTTT
** * * * * *
17727585 CGATGGTCTTGCATCACCATCGACCTAAGTT-GCAATGGTGTCC
128 CGATGGTCCCGCACCACCATCGGCCTAAGTTACCGATGGTGTCT
* * * *
17727628 GATGCTCCTGCACATCCAAGGCACCAAGGT-ACGAATGCATCTCGATGGTCCCACACCACCATCG
1 GATGCTCC-GCACATCCAAGGCACCAAGGTGCCG-ATGCTTCCCGATGGTCCCGCACCACCATCG
* * * *
17727692 GTCTATGTTAG-CGATGGTGTCCGATGCTCTCGCACATCCAAGGCACCAAGGTGTCGATACTTTT
64 GCCTAAGTT-GTCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGTCGATGCTTTT
* *
17727756 CGATGGTCTCGCACTACCATCGGCCTAAGTTACCGATGGTGTCT
128 CGATGGTCCCGCACCACCATCGGCCTAAGTTACCGATGGTGTCT
* * * * ** *
17727800 GATGCTCTCGAACATCCAAGGCACCAAGGTGCCGATGCTTCTCAATAGTCCCATACCACTATCGG
1 GATGCTC-CGCACATCCAAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCGG
** * *
17727865 CCTAAGTTGTCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCCATGTTTTTCG
65 CCTAAGTTGTCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGTCGATGCTTTTCG
* * *
17727930 ATGGTCCCGCACCACCATTGGCCTAAGTTATCAATGGTGT-T
130 ATGGTCCCGCACCACCATCGGCCTAAGTTACCGATGGTGTCT
* ** * * *
17727971 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCTGATTATTCCTGATGGTCTCGCACCACCACCG
1 -GATGCT-CCGCACATCCAAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCG
* ** * * * * *
17728036 ACCTAAGTTACCGATAGTGTCCAATGCTACCGCACATCCAAGGCACTAAGGT-TCAGATGCTTTC
64 GCCTAAGTTGTCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGTC-GATGCTTTT
** * * ** *
17728100 CGATGGTTTCGTACCACCATCGGCCTAAGTTATCGATACT-TCCC
128 CGATGGTCCCGCACCACCATCGGCCTAAGTTACCGATGGTGT-CT
* ** * * * *
17728144 GATGGTCCCGCACCACCATCGACCTAAGTTATCGATGGTGTCCGATGCTTCCCGATGGTCCTGTA
1 GATGCT-CCG---CA-CAT---CC-AAGGCA-CCAAGGTG-CCGATGCTTCCCGATGGTCCCGCA
* ** ** *
17728209 CCACCATCAGCCTAAGTTACCGATGGTGTCCGAT-CTCCCGCACATCCAAGGCACCAAGGTACCT
55 CCACCATCGGCCTAAGTTGTCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGTCG
** * ** ** * * * *
17728273 ATGCTTCCCGATAGTCCAACATTACCATCGACCTAAGCTACCGATGGTCCCACACTTTTTTT
120 ATGCTTTTCGATGGTCCCGCACCACCATCGGCCTAAGTTACCGATGG----------TGTCT
* * * *
17728335 AGCCCAATGGTCTCGCACATCTAAGGCACCAAGGTGCCAATACTTCCCGATGGTCCCGCACCACC
1 -G----ATGCTC-CGCACATCCAAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACC
* * * * * *
17728400 ATCAGACTATGTTATCGATGGTGTTCGATGGCT--CGTACATCCAAGGCACCAAGGTGTCGATGC
60 ATCGGCCTAAGTTGTCGATGGTGTCCGAT-GCTCCCGCACATCCAAGGCACCAAGGTGTCGATGC
** * * * * * * **
17728463 TGCTCGATGCTTCCGCA-CATCCA-AGGTACTAAGGTGCCGATACTG-CT
124 TTTTCGATGGTCCCGCACCA-CCATCGG-CCTAAGTTACCGATGGTGTCT
* ** * * * * * *
17728510 CGATGCTCCTGTACATCCAAGGCACCAAGGCACCGATG-TTGCCCAATGCTCTCGTA-TATTCA-
1 -GATGCTCC-GCACATCCAAGGCACCAAGGTGCCGATGCTT-CCCGATGGTCCCGCACCA-CCAT
* * * * * *
17728572 AGGCACTAAGATG-CTGATGGTGTCCAATGCTCTCGTACATCCAAGGCACCAAGGTGCCGATGCT
62 CGGC-CTAAGTTGTC-GATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGTCGATGCT
* * * ** * * *
17728636 TCTCGATGGTCCCACACCACCATCGGCCTATGTTGTCAATTGTGTCC
125 TTTCGATGGTCCCGCACCACCATCGGCCTAAGTTACCGATGGTGTCT
* * ** *
17728683 AATGCTCC-CATACATCCAAGGCATCAAGGTGTTGATGCTTCCCGATGGTCCCGCACCACCATCT
1 GATGCTCCGC--ACATCCAAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCG
** * * *
17728747 ATCTAAGTTGTCGATGGTGTTCAATGCTCCCGCACATCCAAGGCACCAAGGTGTCGATGC-TTCC
64 GCCTAAGTTGTCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGTCGATGCTTTTC
* * * * *
17728811 CACTGGTCCCACACCATCATTGGCCTAAGTTATCGATGGTGT-T
129 GA-TGGTCCCGCACCACCATCGGCCTAAGTTACCGATGGTGTCT
* * * ** **
17728854 CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGTTTCTCGATAGTTTCG-A--ACCATTA
1 -GATGCT-CCGCACATCCAAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCG
** * * * * * *
17728916 GCCTAAGTTGTCGATGGTGTTTGATGCTCCCGTACATCTAAGACACCGAGGTATGGATGC-TTTC
64 GCCTAAGTTGTCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGTCGATGCTTTTC
* * *
17728980 TGATGGTCCCGCACCACAACCGGCCTAAGTTACCGATGATGTAC-
129 -GATGGTCCCGCACCACCATCGGCCTAAGTTACCGATGGTGT-CT
* * * ** * *
17729024 GATGCTCCTACACATCCAAGGCCCCAAGGTGTCGATGCTTCCTAATGGTCTCGCACCTCCATCGG
1 GATGCTCC-GCACATCCAAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCGG
* * **
17729089 CCTAAGTTATCGATGGTGTTCGATGCTTCCTGATAATCTTGCACCA-CCACCG-ACCTAAGTTAC
65 CCTAAGTTGTCGATGGTGTCCGATGC-TCC-------C--GCA-CATCCAAGGCACC--A---A-
** * * * * * *
17729152 TGATGGTGTCTGATGCTTCCCAAAGGTCCCACGCTACCATCGGCCTAAGTTACTGATGGTGT-T
113 -G--G-TGTC-GATGCTTTTCGATGGTCCCGCACCACCATCGGCCTAAGTTACCGATGGTGTCT
* * * * *
17729215 CGATGCTCCCGTACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCTCGTACCACCACCG
1 -GATGCT-CCGCACATCCAAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCG
* ** ** * *
17729280 ACCTAAGTTACCGATGGTGTCCGATGCTCCCAG-ACATCCAAGGTGCCAAGGTG-CTAATGCTTC
64 GCCTAAGTTGTCGATGGTGTCCGATGCTCCC-GCACATCCAAGGCACCAAGGTGTC-GATGCTTT
17729343 TCGATGGTCC
127 TCGATGGTCC
17729353 AACACATCCA
Statistics
Matches: 1320, Mismatches: 304, Indels: 201
0.72 0.17 0.11
Matches are distributed among these distances:
168 2 0.00
169 131 0.10
170 15 0.01
171 183 0.14
172 564 0.43
173 20 0.02
174 2 0.00
175 4 0.00
176 5 0.00
178 1 0.00
179 2 0.00
180 5 0.00
181 69 0.05
182 56 0.04
183 5 0.00
184 1 0.00
185 2 0.00
186 101 0.08
187 6 0.00
188 7 0.01
189 1 0.00
190 1 0.00
191 6 0.00
192 117 0.09
193 6 0.00
195 1 0.00
196 7 0.01
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (171 bp):
GATGCTCCGCACATCCAAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCGGC
CTAAGTTGTCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGTCGATGCTTTTCGA
TGGTCCCGCACCACCATCGGCCTAAGTTACCGATGGTGTCT
Found at i:17727937 original size:86 final size:86
Alignment explanation
Indices: 17727455--17729352 Score: 883
Period size: 86 Copynumber: 21.6 Consensus size: 86
17727445 CCGATACTAC
*** * * ** *
17727455 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTACCCAATGCTCTAGCA-CATTCA-
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCA-CCAT
* * * **
17727518 AGGCACCAAGGTGCCGATGGTGT
65 CGGC-CTAAGTTATCGATGGTGT
** * * * * ** *
17727541 CCGATGCTCCTACACATCCAAGGCATCAAGGTGTCTATGCTTCTCGATGGTCTTGCATCACCATC
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCACCATC
* * *
17727606 GACCTAAGTT-GCAATGGTGT
66 GGCCTAAGTTATCGATGGTGT
* * * * *
17727626 CCGATGCTCCTGCACATCCAAGGCACCAAGGT-ACGAATGCATCTCGATGGTCCCACACCACCAT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCG-ATGCTTTTCGATGGTCCCGCACCACCAT
* * *
17727690 CGGTCTATGTTAGCGATGGTGT
65 CGGCCTAAGTTATCGATGGTGT
* * * * *
17727712 CCGATGCTCTCGCACATCCAAGGCACCAAGGTGTCGATACTTTTCGATGGTCTCGCACTACCATC
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCACCATC
*
17727777 GGCCTAAGTTACCGATGGTGT
66 GGCCTAAGTTATCGATGGTGT
* * * * * * ** *
17727798 CTGATGCTCTCGAACATCCAAGGCACCAAGGTGCCGATGCTTCTCAATAGTCCCATACCACTATC
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCACCATC
*
17727863 GGCCTAAGTTGTCGATGGTGT
66 GGCCTAAGTTATCGATGGTGT
* * * *
17727884 CCGATGCTCCCGCACATCCAAGGCACCAAGGTACCCATGTTTTTCGATGGTCCCGCACCACCATT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCACCATC
*
17727949 GGCCTAAGTTATCAATGGTGT
66 GGCCTAAGTTATCGATGGTGT
* * * *
17727970 TCGATGCTCCCGCACATCCAAGGCACCAAGGTGCTGAT--TATTCCTGATGGTCTCGCACCACCA
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCT-TTTC-GATGGTCCCGCACCACCA
* * * *
17728033 CCGACCTAAGTTACCGATAGTGT
64 TCGGCCTAAGTTATCGATGGTGT
* * * * * * ** *
17728056 CCAATGCTACCGCACATCCAAGGCACTAAGGTTCAGATGCTTTCCGATGGTTTCGTACCACCATC
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCACCATC
**
17728121 GGCCTAAGTTATCGATACT-T
66 GGCCTAAGTTATCGATGGTGT
* ** * * ** *
17728141 CCCGATGGTCCCGCACCACCATCGACCTAAGTTATCGATGGTGTCCGATGCTTCCCGATGGTCCT
1 -CCGATGCTCCCG---CA-CAT---CC-AAGGCA-CCAAGGTG-CCGATGCTTTTCGATGGTCCC
* * *
17728206 GTACCACCATCAGCCTAAGTTACCGATGGTGT
55 GCACCACCATCGGCCTAAGTTATCGATGGTGT
* * ** * ** **
17728238 CCGAT-CTCCCGCACATCCAAGGCACCAAGGTACCTATGCTTCCCGATAGTCCAACATTACCATC
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCACCATC
* * * *
17728302 GACCTAAGCTACCGATGGT-C
66 GGCCTAAGTTATCGATGGTGT
* ** *** * * ** ** * ** * *
17728322 CCACACTTTTTTTAGCCCAATGGTC-TCGCACATCTAAGGCACCAAGGTGCCAATAC-TTCCCGA
1 CC-GA--TGCTCCCGCAC-AT--CCAAGGCAC--C-AAGGTGCC--GATG-CTTTTCGAT---G-
* * *
17728385 TGGTCCCGCACCACCATCAGACTATGTTATCGATGGTGT
50 --GTCCCGCACCACCATCGGCCTAAGTTATCGATGGTGT
* * * ** * *
17728424 TCGATGGCT--CGTACATCCAAGGCACCAAGGTGTCGATGCTGCTCGATGCTTCCGCA-CATCCA
1 CCGAT-GCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCA-CCA
* * * ** **
17728486 -AGGTACTAAGGTGCCGATACTG-
64 TCGG-CCTAAGTTATCGATGGTGT
* * ** ** * * * * * *
17728508 CTCGATGCTCCTGTACATCCAAGGCACCAAGGCACCGATG-TTGCCCAATGCTCTCGTA-TATTC
1 C-CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTT-TTCGATGGTCCCGCACCA-CC
*
17728571 A-AGGCACTAAG--ATGCTGATGGTGT
63 ATCGGC-CTAAGTTAT-C-GATGGTGT
* * * * *
17728595 CCAATGCTCTCGTACATCCAAGGCACCAAGGTGCCGATGCTTCTCGATGGTCCCACACCACCATC
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCACCATC
* * * *
17728660 GGCCTATGTTGTCAATTGTGT
66 GGCCTAAGTTATCGATGGTGT
* ** * ** **
17728681 CCAATGCTCCCATACATCCAAGGCATCAAGGTGTTGATGCTTCCCGATGGTCCCGCACCACCATC
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCACCATC
*** *
17728746 TATCTAAGTTGTCGATGGTGT
66 GGCCTAAGTTATCGATGGTGT
* * * * * * *
17728767 TCAATGCTCCCGCACATCCAAGGCACCAAGGTGTCGATGC-TTCCCACTGGTCCCACACCATCAT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGA-TGGTCCCGCACCACCAT
*
17728831 TGGCCTAAGTTATCGATGGTGT
65 CGGCCTAAGTTATCGATGGTGT
* * **
17728853 TCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATG-TTTCTCGATAGTTTCG-A--ACCAT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTT-TCGATGGTCCCGCACCACCAT
** *
17728914 TAGCCTAAGTTGTCGATGGTGT
65 CGGCCTAAGTTATCGATGGTGT
** * * * * *** * *
17728936 TTGATGCTCCCGTACATCTAAGACACCGAGGTATGGATGC-TTTCTGATGGTCCCGCACCACAAC
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTC-GATGGTCCCGCACCACCAT
* *
17729000 CGGCCTAAGTTACCGATGATGT
65 CGGCCTAAGTTATCGATGGTGT
* ** * * * * * *
17729022 ACGATGCTCCTACACATCCAAGGCCCCAAGGTGTCGATGC-TTCCTAATGGTCTCGCACCTCCAT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTC-GATGGTCCCGCACCACCAT
17729086 CGGCCTAAGTTATCGATGGTGT
65 CGGCCTAAGTTATCGATGGTGT
* ** * * * * * *
17729108 TCGATGCTTCCTGATAATCTTGCACCA-CCACCG-ACCTAAGTTACTGATG-GTGTCTGATGCTT
1 CCGATGC-TCC-------C--GCA-CATCCAAGGCACC-AAGGTGCCGATGCTTTTC-GATG-GT
17729170 CCCAAAGGTCCCACGCTACCATCGGCCTAAGTTA-CTGATGGTGT
52 CCC----G---CAC-C-ACCATCGGCCTAAGTTATC-GATGGTGT
* * * ** * * *
17729214 TCGATGCTCCCGTACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCTCGTACCACCACC
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCACCATC
* *
17729279 GACCTAAGTTACCGATGGTGT
66 GGCCTAAGTTATCGATGGTGT
** ** *
17729300 CCGATGCTCCCAG-ACATCCAAGGTGCCAAGGTGCTAATGCTTCTCGATGGTCC
1 CCGATGCTCCC-GCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCC
17729353 AACACATCCA
Statistics
Matches: 1379, Mismatches: 337, Indels: 192
0.72 0.18 0.10
Matches are distributed among these distances:
82 2 0.00
83 64 0.05
84 11 0.01
85 147 0.11
86 872 0.63
87 31 0.02
88 11 0.01
89 4 0.00
90 9 0.01
91 9 0.01
92 3 0.00
93 14 0.01
94 5 0.00
95 21 0.02
96 91 0.07
97 13 0.01
98 3 0.00
99 1 0.00
100 1 0.00
101 27 0.02
102 1 0.00
104 3 0.00
105 5 0.00
106 31 0.02
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (86 bp):
CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTTTTCGATGGTCCCGCACCACCATC
GGCCTAAGTTATCGATGGTGT
Found at i:17728189 original size:43 final size:43
Alignment explanation
Indices: 17727854--17728190 Score: 145
Period size: 43 Copynumber: 7.8 Consensus size: 43
17727844 ATAGTCCCAT
* * * *
17727854 ACCACTATCGGCCTAAGTTGTCGATGGTGTCCGATGCTCCCGC
1 ACCACCATCGACCTAAGTTATCGATGGTGTCCGATGGTCCCGC
** * * * * * *
17727897 A-CATCCAAGGCACC-AAGGTACCCATGTTTTTCGATGGTCCCGC
1 ACCA-CCATCG-ACCTAAGTTATCGATGGTGTCCGATGGTCCCGC
* * * * *
17727940 ACCACCATTGGCCTAAGTTATCAATGGTGTTCGATGCTCCCGC
1 ACCACCATCGACCTAAGTTATCGATGGTGTCCGATGGTCCCGC
** * * ** *
17727983 A-CATCCAAGGCACC-AAGGT-GCTGATTAT-TCCTGATGGTCTCGC
1 ACCA-CCATCG-ACCTAAGTTATC-GATGGTGTCC-GATGGTCCCGC
* * * * * *
17728026 ACCACCACCGACCTAAGTTACCGATAGTGTCCAATGCTACCGC
1 ACCACCATCGACCTAAGTTATCGATGGTGTCCGATGGTCCCGC
* * * * * ** *
17728069 A-CATCCA-AGGCACTAAGGT-TCAGATGCTTTCCGATGGTTTCGT
1 ACCA-CCATCGAC-CTAAGTTATC-GATGGTGTCCGATGGTCCCGC
* **
17728112 ACCACCATCGGCCTAAGTTATCGATACT-TCCCGATGGTCCCGC
1 ACCACCATCGACCTAAGTTATCGATGGTGT-CCGATGGTCCCGC
17728155 ACCACCATCGACCTAAGTTATCGATGGTGTCCGATG
1 ACCACCATCGACCTAAGTTATCGATGGTGTCCGATG
17728191 CTTCCCGATG
Statistics
Matches: 211, Mismatches: 63, Indels: 40
0.67 0.20 0.13
Matches are distributed among these distances:
42 18 0.09
43 173 0.82
44 20 0.09
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (43 bp):
ACCACCATCGACCTAAGTTATCGATGGTGTCCGATGGTCCCGC
Found at i:17728223 original size:53 final size:53
Alignment explanation
Indices: 17728133--17728242 Score: 168
Period size: 53 Copynumber: 2.1 Consensus size: 53
17728123 CCTAAGTTAT
*
17728133 CGATACTTCCCGATGGTCCCGCACCACCATCGACCTAAGTTATCGATGGTGTC
1 CGATACTTCCCGATGGTCCCGCACCACCATCGACCTAAGTTACCGATGGTGTC
* * *
17728186 CGATGCTTCCCGATGGTCCTGTACCACCATC-AGCCTAAGTTACCGATGGTGTC
1 CGATACTTCCCGATGGTCCCGCACCACCATCGA-CCTAAGTTACCGATGGTGTC
17728239 CGAT
1 CGAT
17728243 CTCCCGCACA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
52 1 0.02
53 51 0.98
ACGTcount: A:0.20, C:0.33, G:0.22, T:0.25
Consensus pattern (53 bp):
CGATACTTCCCGATGGTCCCGCACCACCATCGACCTAAGTTACCGATGGTGTC
Found at i:17728802 original size:43 final size:43
Alignment explanation
Indices: 17728414--17728891 Score: 201
Period size: 43 Copynumber: 11.1 Consensus size: 43
17728404 GACTATGTTA
* *
17728414 TCGATGGTGTTCGATGGCT--CGTACATCCAAGGCACCAAGGTG
1 TCGATGCTGTTCGAT-GCTCCCGCACATCCAAGGCACCAAGGTG
* * * *
17728456 TCGATGCTGCTCGATGCTTCCGCACATCCAAGGTACTAAGGTG
1 TCGATGCTGTTCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * * * * **
17728499 CCGATACTGCTCGATGCTCCTGTACATCCAAGGCACCAAGGCA
1 TCGATGCTGTTCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * ** * * * * * * *
17728542 CCGATGTTGCCCAATGCTCTCGTATATTCAAGGCACTAAGATG
1 TCGATGCTGTTCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * * * *
17728585 -CTGATGGTGTCCAATGCTCTCGTACATCCAAGGCACCAAGGTG
1 TC-GATGCTGTTCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * * * * * *
17728628 CCGATGCT-TCTCGATGGTCCCACACCA-CCATCGGC-CTATGTTG
1 TCGATGCTGT-TCGATGCTCCCGCA-CATCCA-AGGCACCAAGGTG
* * * ** *
17728671 TCAATTG-TGTCCAATGCTCCCATACATCCAAGGCATCAAGGTG
1 TCGA-TGCTGTTCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * * * * *
17728714 TTGATGCT-TCCCGATGGTCCCGCACCA-CC-A-TCTATCTAAGTTG
1 TCGATGCTGT-TCGATGCTCCCGCA-CATCCAAGGC-A-CCAAGGTG
* *
17728757 TCGATGGTGTTCAATGCTCCCGCACATCCAAGGCACCAAGGTG
1 TCGATGCTGTTCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * * * * * * *
17728800 TCGATGCT-TCCCACTGGTCCCACACCAT-CATTGGC-CTAAGTTA
1 TCGATGCTGTTCGA-TGCTCCCGCA-CATCCA-AGGCACCAAGGTG
*
17728843 TCGATGGTGTTCGATGCTCCCGCACATCCAAGGCACCAAGGTG
1 TCGATGCTGTTCGATGCTCCCGCACATCCAAGGCACCAAGGTG
*
17728886 CCGATG
1 TCGATG
17728892 TTTCTCGATA
Statistics
Matches: 319, Mismatches: 91, Indels: 51
0.69 0.20 0.11
Matches are distributed among these distances:
41 4 0.01
42 36 0.11
43 255 0.80
44 23 0.07
45 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.24
Consensus pattern (43 bp):
TCGATGCTGTTCGATGCTCCCGCACATCCAAGGCACCAAGGTG
Found at i:17729133 original size:53 final size:52
Alignment explanation
Indices: 17729051--17729221 Score: 170
Period size: 53 Copynumber: 3.2 Consensus size: 52
17729041 AAGGCCCCAA
**
17729051 GGTGTCGATGCTTCCTAATGGTCTCGCACCTCCATCGGCCTAAGTTA-TCGAT
1 GGTGTCGATGCTTCCTAATAATCTCGCACCTCCATCGGCCTAAGTTACT-GAT
* * * * *
17729103 GGTGTTCGATGCTTCCTGATAATCTTGCACCACCACCGACCTAAGTTACTGAT
1 GGTG-TCGATGCTTCCTAATAATCTCGCACCTCCATCGGCCTAAGTTACTGAT
* *
17729156 GGTGTCTGATGCTTCCCAA-AGGTC-C-CACGCTACCATCGGCCTAAGTTACTGAT
1 GGTGTC-GATGCTTCCTAATA-ATCTCGCAC-CT-CCATCGGCCTAAGTTACTGAT
17729209 GGTGTTCGATGCT
1 GGTG-TCGATGCT
17729222 CCCGTACATC
Statistics
Matches: 98, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
51 3 0.03
52 8 0.08
53 84 0.86
54 3 0.03
ACGTcount: A:0.19, C:0.28, G:0.23, T:0.30
Consensus pattern (52 bp):
GGTGTCGATGCTTCCTAATAATCTCGCACCTCCATCGGCCTAAGTTACTGAT
Found at i:17729488 original size:20 final size:20
Alignment explanation
Indices: 17729451--17729494 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
17729441 TTTATATTTA
17729451 TAAAATATAATATAAAAATT
1 TAAAATATAATATAAAAATT
17729471 CTAAAATATAAT-TAAAAATT
1 -TAAAATATAATATAAAAATT
17729491 TAAA
1 TAAA
17729495 GAAAGTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 4 0.17
20 8 0.35
21 11 0.48
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (20 bp):
TAAAATATAATATAAAAATT
Found at i:17738045 original size:24 final size:24
Alignment explanation
Indices: 17738000--17738047 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
17737990 TGCAAAAACT
17738000 AAAGAAACAAATTAAAGTAAAATA
1 AAAGAAACAAATTAAAGTAAAATA
*
17738024 AAAGACAA-AAATTAACAGAAAAAT
1 AAAGA-AACAAATTAA-AGTAAAAT
17738048 TGCAATGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.71, C:0.06, G:0.08, T:0.15
Consensus pattern (24 bp):
AAAGAAACAAATTAAAGTAAAATA
Found at i:17754133 original size:17 final size:17
Alignment explanation
Indices: 17754107--17754159 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 17
17754097 AATGAGTTCA
*
17754107 TAATGTTGATATATGAT
1 TAATGATGATATATGAT
*
17754124 TAATGGTGATATATGACAT
1 TAATGATGATATATG--AT
17754143 TAAATGATGATATATGA
1 T-AATGATGATATATGA
17754160 GATGAAATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 14 0.45
18 1 0.03
19 3 0.10
20 13 0.42
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (17 bp):
TAATGATGATATATGAT
Found at i:17754167 original size:20 final size:20
Alignment explanation
Indices: 17754125--17754168 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
17754115 ATATATGATT
* *
17754125 AATGGTGATATATGACATTA
1 AATGATGATATATGACATGA
*
17754145 AATGATGATATATGAGATGA
1 AATGATGATATATGACATGA
17754165 AATG
1 AATG
17754169 TTGAAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.02, G:0.23, T:0.32
Consensus pattern (20 bp):
AATGATGATATATGACATGA
Found at i:17754931 original size:20 final size:19
Alignment explanation
Indices: 17754902--17754944 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
17754892 GAAGAAAAAT
* *
17754902 GTGAATAATGATGTATTATG
1 GTGAAAAATGATGT-TCATG
17754922 GTGAAAAATGATGTTCATG
1 GTGAAAAATGATGTTCATG
17754941 GTGA
1 GTGA
17754945 TATTGCCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.35
Consensus pattern (19 bp):
GTGAAAAATGATGTTCATG
Found at i:17755046 original size:23 final size:22
Alignment explanation
Indices: 17755013--17755172 Score: 106
Period size: 23 Copynumber: 6.8 Consensus size: 22
17755003 ACCTTAGGGC
*
17755013 GCTCTCCGTTTAGCACTGTTTGT
1 GCTCTCTGTTTAGCACT-TTTGT
*
17755036 GCTCTCTGTTTAGCACATTTCGT
1 GCTCTCTGTTTAGCAC-TTTTGT
*
17755059 GCTCTCTGATATTAGCACTTCGTGT
1 GCTCTCTG-T-TTAGCACTT-TTGT
* *
17755084 GCTCTCCGATTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACTTT-TGT
* *
17755107 ACTCTATGTTTAGCA-TTGTGTGT
1 GCTCTCTGTTTAGCACTT-T-TGT
* * * *
17755130 GCTCTCTATTGCCCAACACTTATGT
1 GCTCTCTGTT---TAGCACTTTTGT
*
17755155 GCTCTCTGTTTAGTACTT
1 GCTCTCTGTTTAGCACTT
17755173 CGGTACTATC
Statistics
Matches: 106, Mismatches: 21, Indels: 21
0.72 0.14 0.14
Matches are distributed among these distances:
22 7 0.07
23 62 0.58
24 4 0.04
25 28 0.26
26 3 0.03
27 2 0.02
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.42
Consensus pattern (22 bp):
GCTCTCTGTTTAGCACTTTTGT
Found at i:17755085 original size:25 final size:23
Alignment explanation
Indices: 17755013--17755136 Score: 119
Period size: 23 Copynumber: 5.3 Consensus size: 23
17755003 ACCTTAGGGC
*
17755013 GCTCTCCGTTTAGCACTGTT-TGT
1 GCTCTCTGTTTAGCACT-TTGTGT
*
17755036 GCTCTCTGTTTAGCACATTT-CGT
1 GCTCTCTGTTTAGCAC-TTTGTGT
*
17755059 GCTCTCTGATATTAGCACTTCGTGT
1 GCTCTCTG-T-TTAGCACTTTGTGT
* *
17755084 GCTCTCCGATTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACTTTGTGT
* *
17755107 ACTCTATGTTTAGCA-TTGTGTGT
1 GCTCTCTGTTTAGCACTT-TGTGT
17755130 GCTCTCT
1 GCTCTCT
17755137 ATTGCCCAAC
Statistics
Matches: 83, Mismatches: 13, Indels: 10
0.78 0.12 0.09
Matches are distributed among these distances:
22 2 0.02
23 61 0.73
24 4 0.05
25 16 0.19
ACGTcount: A:0.13, C:0.24, G:0.20, T:0.43
Consensus pattern (23 bp):
GCTCTCTGTTTAGCACTTTGTGT
Found at i:17757913 original size:217 final size:213
Alignment explanation
Indices: 17757393--17757964 Score: 693
Period size: 214 Copynumber: 2.6 Consensus size: 213
17757383 CATTGAGCAC
* *
17757393 TTATCGATTTTAAATAGGATACTCAATTATTTAGGTTCAAAGAAAAACCATACCGAACACGCTAG
1 TTATCGATTTTAAATAGGATACTCAATTATTTAGGTTCAAAGAAAAATCATACC-AACACGTTAG
* * * **
17757458 GGCACAATTTCTCAAATTCCCTAAAATAAAATAACATTGCCTTAATTTTTTAAAACAATTTATGT
65 GGCACAATTTCTCGAATTCCCTAAAATAAAAGAATATTGCCTTTGTTTTTTAAAACAATTTATGT
* * * * * *
17757523 ACTTTAAAAATGATATATGATTTATTTTGTTAAAATGTTTTGCAAAATATGGATAAATAACTATG
130 ATTTTAAAAAAGATATATCATTTATTTTATTAAAATGTTTTGCAAAAGATGGATAAAT-ACCATG
* *
17757588 TATTTTATAAAAAATGACAA
194 TATTTCAAAAAAAATGACAA
* * ** * * * *
17757608 TTA-CCAATTTAAAGGGGATACTCGATTAGTTAGGTTCAAAGGAAAATCATACCCAACACGTTTG
1 TTATCGATTTTAAATAGGATACTCAATTATTTAGGTTCAAAGAAAAATCATA-CCAACACGTTAG
* * *
17757672 GGCACAATTTTTTGAATTCCCTAAAATAAAAGAATATTGTCTTTGTTTTTTAAAACAATTTATGT
65 GGCACAATTTCTCGAATTCCCTAAAATAAAAGAATATTGCCTTTGTTTTTTAAAACAATTTATGT
17757737 ATTTTAAAAAAGATATA-CATTTTATTTTATTAAAAATGTTTTGCAAAAGATGGATAAAT-CCAT
130 ATTTTAAAAAAGATATATCA-TTTATTTTATT-AAAATGTTTTGCAAAAGATGGATAAATACCAT
* *
17757800 GTAATTTACAAATAAAAATGGCGA
193 GT-ATTT-CAAA-AAAAATGACAA
* *
17757824 TTATCGATTTTAGATAGGATA-TTAATTTATTTAGGTTCAAAGAAAAATCATATCCAACACGTTA
1 TTATCGATTTTAAATAGGATACTCAA-TTATTTAGGTTCAAAGAAAAATCATA-CCAACACGTTA
*
17757888 GGGCACAATTTCTCGAATCCCCTAAAATAAAAGAATATTGCCTTTAGTTTTTTTAAAAAAAACAA
64 GGGCACAATTTCTCGAATTCCCTAAAATAAAAGAATATTGCCTTT-G-TTTTTT----AAAACAA
17757953 TTTATGTATTTT
123 TTTATGTATTTT
17757965 GGAAAACAGC
Statistics
Matches: 300, Mismatches: 43, Indels: 20
0.83 0.12 0.06
Matches are distributed among these distances:
213 6 0.02
214 134 0.45
215 33 0.11
216 14 0.05
217 87 0.29
218 1 0.00
219 6 0.02
223 19 0.06
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (213 bp):
TTATCGATTTTAAATAGGATACTCAATTATTTAGGTTCAAAGAAAAATCATACCAACACGTTAGG
GCACAATTTCTCGAATTCCCTAAAATAAAAGAATATTGCCTTTGTTTTTTAAAACAATTTATGTA
TTTTAAAAAAGATATATCATTTATTTTATTAAAATGTTTTGCAAAAGATGGATAAATACCATGTA
TTTCAAAAAAAATGACAA
Found at i:17765701 original size:17 final size:17
Alignment explanation
Indices: 17765679--17765717 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
17765669 AGGTGGAGAA
* *
17765679 CTTGTTCGTTGAGAGTT
1 CTTGTTCGTAGAGAATT
17765696 CTTGTTCGTAGAGAATT
1 CTTGTTCGTAGAGAATT
17765713 CTTGT
1 CTTGT
17765718 CAAGGTGGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.15, C:0.13, G:0.26, T:0.46
Consensus pattern (17 bp):
CTTGTTCGTAGAGAATT
Found at i:17765764 original size:41 final size:41
Alignment explanation
Indices: 17765707--17765794 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
17765697 TTGTTCGTAG
17765707 AGAATTCTTGTCAAGGTGGAGATTGTCAGAATTGGGTGACT
1 AGAATTCTTGTCAAGGTGGAGATTGTCAGAATTGGGTGACT
* *
17765748 AGAATTCTTGTTAAGGTGGAGATTGTTAGAATTGGGTGACT
1 AGAATTCTTGTCAAGGTGGAGATTGTCAGAATTGGGTGACT
17765789 AGAATT
1 AGAATT
17765795 GTTTTTTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.28, C:0.07, G:0.31, T:0.34
Consensus pattern (41 bp):
AGAATTCTTGTCAAGGTGGAGATTGTCAGAATTGGGTGACT
Found at i:17771029 original size:39 final size:40
Alignment explanation
Indices: 17770976--17771051 Score: 118
Period size: 39 Copynumber: 1.9 Consensus size: 40
17770966 AATAGGTATG
17770976 TCCAATATGAAAAGGGTTGCGACTCTTCAAAAGGTGTTCA
1 TCCAATATGAAAAGGGTTGCGACTCTTCAAAAGGTGTTCA
* * *
17771016 TCCAATTTG-AAAGGGTTGTGTCTCTTCAAAAGGTGT
1 TCCAATATGAAAAGGGTTGCGACTCTTCAAAAGGTGT
17771052 CCATTGATTG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 25 0.76
40 8 0.24
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (40 bp):
TCCAATATGAAAAGGGTTGCGACTCTTCAAAAGGTGTTCA
Found at i:17774715 original size:12 final size:13
Alignment explanation
Indices: 17774698--17774726 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
17774688 ATAAAAAATT
17774698 AATTTAAA-TTTA
1 AATTTAAATTTTA
17774710 AATTTAAATTTTA
1 AATTTAAATTTTA
17774723 AATT
1 AATT
17774727 AAAACAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTTAAATTTTA
Found at i:17786175 original size:12 final size:12
Alignment explanation
Indices: 17786158--17786190 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
17786148 CACGAACAAG
17786158 CTCGTTTATTGA
1 CTCGTTTATTGA
17786170 CTCGTTTA-TGA
1 CTCGTTTATTGA
*
17786181 CTTGTTTATT
1 CTCGTTTATT
17786191 TGTTAATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.55
Consensus pattern (12 bp):
CTCGTTTATTGA
Found at i:17786349 original size:12 final size:12
Alignment explanation
Indices: 17786275--17786350 Score: 50
Period size: 12 Copynumber: 6.4 Consensus size: 12
17786265 GTTATTCATT
17786275 AACATTGTTCGTG
1 AACA-TGTTCGTG
* *
17786288 AGCATGTTCGTT
1 AACATGTTCGTG
*
17786300 TA-ATGTTCGTG
1 AACATGTTCGTG
17786311 AACATGTTC--G
1 AACATGTTCGTG
* * **
17786321 ATCAAGTTAAATG
1 AACATGTT-CGTG
17786334 AACATGTTCGTG
1 AACATGTTCGTG
17786346 AACAT
1 AACAT
17786351 TACATAAACG
Statistics
Matches: 46, Mismatches: 13, Indels: 9
0.68 0.19 0.13
Matches are distributed among these distances:
10 7 0.15
11 9 0.20
12 20 0.43
13 10 0.22
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (12 bp):
AACATGTTCGTG
Found at i:17786406 original size:26 final size:28
Alignment explanation
Indices: 17786354--17786411 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
17786344 TGAACATTAC
*
17786354 ATAAACGAACATGAACACACAGAATTTTAA
1 ATAAACGAACATGAACACAC--AATTTGAA
17786384 ATAAACGAACATGAACA-AC-ATTTGAA
1 ATAAACGAACATGAACACACAATTTGAA
17786410 AT
1 AT
17786412 TCTTAACGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 8 0.30
29 2 0.07
30 17 0.63
ACGTcount: A:0.53, C:0.16, G:0.10, T:0.21
Consensus pattern (28 bp):
ATAAACGAACATGAACACACAATTTGAA
Found at i:17792505 original size:17 final size:17
Alignment explanation
Indices: 17792483--17792515 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17792473 AATGGACAAC
17792483 GGTCAACGGGTCGGGTA
1 GGTCAACGGGTCGGGTA
*
17792500 GGTCAACGGGTTGGGT
1 GGTCAACGGGTCGGGT
17792516 TCGGGTCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.48, T:0.21
Consensus pattern (17 bp):
GGTCAACGGGTCGGGTA
Found at i:17793004 original size:19 final size:20
Alignment explanation
Indices: 17792961--17793005 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
17792951 TCAAAGGTAT
17792961 CGATA-TTTTTTGTAAAATA
1 CGATACTTTTTTGTAAAATA
17792980 CTGATACTTTTCTT-TAAAA-A
1 C-GATACTTTT-TTGTAAAATA
17793000 CGATAC
1 CGATAC
17793006 CAAGGGGGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
19 6 0.26
20 6 0.26
21 9 0.39
22 2 0.09
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (20 bp):
CGATACTTTTTTGTAAAATA
Found at i:17793674 original size:23 final size:24
Alignment explanation
Indices: 17793640--17793721 Score: 121
Period size: 25 Copynumber: 3.4 Consensus size: 24
17793630 ACGGGCAACA
17793640 GAGAGCACACAAAGTGCTAAT-CG
1 GAGAGCACACAAAGTGCTAATACG
*
17793663 GAGAGCATACAAAGTGCTAATAACG
1 GAGAGCACACAAAGTGCTAAT-ACG
*
17793688 GAGAGCACACACAGTGCTAATAACG
1 GAGAGCACACAAAGTGCTAAT-ACG
17793713 GAGAGCACA
1 GAGAGCACA
17793722 ATACGTGCTA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
23 20 0.37
25 34 0.63
ACGTcount: A:0.41, C:0.21, G:0.26, T:0.12
Consensus pattern (24 bp):
GAGAGCACACAAAGTGCTAATACG
Found at i:17793729 original size:25 final size:24
Alignment explanation
Indices: 17793640--17793732 Score: 102
Period size: 25 Copynumber: 3.8 Consensus size: 24
17793630 ACGGGCAACA
*
17793640 GAGAGCACACAAAGTGCTAAT--CG
1 GAGAGCACA-AACGTGCTAATAACG
17793663 GAGAGCATACAAA-GTGCTAATAACG
1 GAGAGC--ACAAACGTGCTAATAACG
*
17793688 GAGAGCACACACAGTGCTAATAACG
1 GAGAGCACAAAC-GTGCTAATAACG
17793713 GAGAGCACAATACGTGCTAA
1 GAGAGCACAA-ACGTGCTAA
17793733 AATAATGACA
Statistics
Matches: 61, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
23 18 0.30
24 2 0.03
25 39 0.64
26 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.25, T:0.14
Consensus pattern (24 bp):
GAGAGCACAAACGTGCTAATAACG
Found at i:17796781 original size:5 final size:5
Alignment explanation
Indices: 17796771--17796816 Score: 65
Period size: 5 Copynumber: 8.8 Consensus size: 5
17796761 TACCTGTAAT
*
17796771 TTTTA TTTTA TTTTA ATTTA GTTTTA TTTTA TTTTA TTTCTA TTTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTT-TA TTTT
17796817 TAATTCATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
5 28 0.76
6 9 0.24
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:17796797 original size:16 final size:15
Alignment explanation
Indices: 17796772--17796821 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 15
17796762 ACCTGTAATT
17796772 TTTATTTTATTTTAA
1 TTTATTTTATTTTAA
*
17796787 TTTAGTTTTATTTTAT
1 TTTA-TTTTATTTTAA
17796803 TTTATTTCTATTTTTAA
1 TTTATTT-TA-TTTTAA
17796820 TT
1 TT
17796822 CATATCTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 7 0.23
16 16 0.53
17 7 0.23
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (15 bp):
TTTATTTTATTTTAA
Found at i:17796985 original size:4 final size:4
Alignment explanation
Indices: 17796978--17797159 Score: 73
Period size: 4 Copynumber: 45.8 Consensus size: 4
17796968 GTGTTTAATT
* * *
17796978 TTTA TTTA -TTA TTT- TTTA TTTA ATTG TTTA -TTA TTCA -TT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * *
17797021 TGTTA TTTA TATTC TTAA CTTTA TTTA TTTA TTT- TTTA TGTA TTTTA
1 T-TTA TTTA T-TTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA -TTTA
* *
17797068 TTTA TTTA -TT- TTTA TGCTA TTTA TATT- TTTGCC TTTA TTTAA TTTTA
1 TTTA TTTA TTTA TTTA T-TTA TTTA T-TTA TTT--A TTTA TTT-A -TTTA
* * * *
17797115 TTTA TTCA -TTA TTT- TTAA TTTA TTTTA TTCA TTT- GTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTT
17797160 GTATGCCATT
Statistics
Matches: 132, Mismatches: 23, Indels: 46
0.66 0.11 0.23
Matches are distributed among these distances:
3 27 0.20
4 75 0.57
5 24 0.18
6 6 0.05
ACGTcount: A:0.23, C:0.04, G:0.03, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:17796989 original size:25 final size:25
Alignment explanation
Indices: 17796957--17797017 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
17796947 TTATTAGTAC
*
17796957 TATT-TTATTTAGTGTTTAATT-TT
1 TATTATTATTTAGTATTTAATTGTT
**
17796980 TATTTATTATTTTTTATTTAATTGTT
1 TA-TTATTATTTAGTATTTAATTGTT
17797006 TATTATTCATTT
1 TATTATT-ATTT
17797018 TTATGTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 2 0.06
24 2 0.06
25 19 0.61
26 8 0.26
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (25 bp):
TATTATTATTTAGTATTTAATTGTT
Found at i:17797018 original size:25 final size:25
Alignment explanation
Indices: 17796971--17797082 Score: 83
Period size: 25 Copynumber: 4.5 Consensus size: 25
17796961 TTATTTAGTG
17796971 TTTAATTTTTATTTATTATTTTTTA
1 TTTAATTTTTATTTATTATTTTTTA
17796996 TTTAATTGTTTA-TTATTCA-TTTTTA
1 TTTAATT-TTTATTTATT-ATTTTTTA
* *
17797021 TGTT-ATTTATATTCT-TAACTTTATTTA
1 T-TTAATTTTTATT-TATTA-TTT-TTTA
* * *
17797048 TTTATTTTTTATGTATT-TTATTTA
1 TTTAATTTTTATTTATTATTTTTTA
17797072 TTT-ATTTTTAT
1 TTTAATTTTTAT
17797083 GCTATTTATA
Statistics
Matches: 69, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
23 7 0.10
24 11 0.16
25 26 0.38
26 13 0.19
27 12 0.17
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (25 bp):
TTTAATTTTTATTTATTATTTTTTA
Found at i:17797071 original size:24 final size:24
Alignment explanation
Indices: 17797040--17797095 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 24
17797030 TATTCTTAAC
17797040 TTTATTTATTTATTTTTTATG-TAT
1 TTTATTTATTTA-TTTTTATGCTAT
17797064 TTTATTTATTTATTTTTATGCTAT
1 TTTATTTATTTATTTTTATGCTAT
17797088 TTATATTT
1 TT-TATTT
17797096 TTGCCTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 8 0.27
24 17 0.57
25 5 0.17
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.73
Consensus pattern (24 bp):
TTTATTTATTTATTTTTATGCTAT
Found at i:17797091 original size:61 final size:60
Alignment explanation
Indices: 17796978--17797139 Score: 166
Period size: 61 Copynumber: 2.6 Consensus size: 60
17796968 GTGTTTAATT
* *
17796978 TTTATTTA-TTATTTTTTATTTAATTGTT-TATTATTCATTTTTATGTTATTTATATTCTTAAC
1 TTTATTTATTTATTTTTTA-TT-ATT-TTAT-TTATTTATTTTTATGCTATTTATATTCTTAAC
* **
17797040 TTTATTTATTTATTTTTTATGTATTTTATTTATTTATTTTTATGCTATTTATATTTTTGCC
1 TTTATTTATTTATTTTTTAT-TATTTTATTTATTTATTTTTATGCTATTTATATTCTTAAC
*
17797101 TTTATTTAATTTTATTTATTCATTATTTTTAATTTATTT
1 TTTATTT-A-TTTATTT-TTTATTA-TTTT-ATTTATTT
17797140 TATTCATTTG
Statistics
Matches: 86, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
61 36 0.42
62 14 0.16
63 20 0.23
64 8 0.09
65 8 0.09
ACGTcount: A:0.23, C:0.04, G:0.03, T:0.70
Consensus pattern (60 bp):
TTTATTTATTTATTTTTTATTATTTTATTTATTTATTTTTATGCTATTTATATTCTTAAC
Found at i:17797128 original size:33 final size:33
Alignment explanation
Indices: 17797068--17797130 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
17797058 ATGTATTTTA
* *
17797068 TTTATTTATTTTTATGCTATTTATATTTTTGCC
1 TTTATTTAATTTTATGCTATTCATATTTTTGCC
*
17797101 TTTATTTAATTTTAT-TTATTCATTATTTTT
1 TTTATTTAATTTTATGCTATTCA-TATTTTT
17797131 AATTTATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 5 0.19
33 21 0.81
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.70
Consensus pattern (33 bp):
TTTATTTAATTTTATGCTATTCATATTTTTGCC
Found at i:17797671 original size:14 final size:14
Alignment explanation
Indices: 17797647--17797695 Score: 73
Period size: 14 Copynumber: 3.5 Consensus size: 14
17797637 AAAAACATAG
17797647 AGACAAAAGCAA-A
1 AGACAAAAGCAACA
17797660 AGACAAAGAGCAACA
1 AGACAAA-AGCAACA
*
17797675 AGACAAAAGCAAGA
1 AGACAAAAGCAACA
17797689 AGACAAA
1 AGACAAA
17797696 TGTAATCGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 7 0.21
14 18 0.55
15 8 0.24
ACGTcount: A:0.65, C:0.16, G:0.18, T:0.00
Consensus pattern (14 bp):
AGACAAAAGCAACA
Found at i:17798372 original size:27 final size:26
Alignment explanation
Indices: 17798342--17798393 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
17798332 TTTAATAATG
*
17798342 TTCATTTATTTA-TTTATTATTTCTTCC
1 TTCATTTAATTACTTT-TT-TTTCTTCC
17798369 TTCATTTAATTACTTTTTTTTCTTC
1 TTCATTTAATTACTTTTTTTTCTTC
17798394 TCTAATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 13 0.57
28 3 0.13
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.67
Consensus pattern (26 bp):
TTCATTTAATTACTTTTTTTTCTTCC
Found at i:17802849 original size:9 final size:8
Alignment explanation
Indices: 17802835--17802898 Score: 58
Period size: 8 Copynumber: 7.6 Consensus size: 8
17802825 TTCACTCAAA
17802835 AAAAGAAAG
1 AAAA-AAAG
17802844 AAAAGAAAG
1 AAAA-AAAG
*
17802853 AAAAAAGG
1 AAAAAAAG
*
17802861 AAAAAGAG
1 AAAAAAAG
17802869 AAAAAGAA-
1 AAAAA-AAG
*
17802877 AAAAGAAGG
1 AAAA-AAAG
17802886 AAAAAAAG
1 AAAAAAAG
17802894 AAAAA
1 AAAAA
17802899 GGAGAGGTCG
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
8 27 0.59
9 19 0.41
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:17802889 original size:33 final size:35
Alignment explanation
Indices: 17802834--17802899 Score: 100
Period size: 33 Copynumber: 1.9 Consensus size: 35
17802824 TTTCACTCAA
*
17802834 AAAAAGAAAGAAAAGAAAGAAAAAAGGAAAAAGAG
1 AAAAAGAAAGAAAAGAAAGAAAAAAAGAAAAAGAG
*
17802869 AAAAAG-AA-AAAAGAAGGAAAAAAAGAAAAAG
1 AAAAAGAAAGAAAAGAAAGAAAAAAAGAAAAAG
17802900 GAGAGGTCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 21 0.72
34 2 0.07
35 6 0.21
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (35 bp):
AAAAAGAAAGAAAAGAAAGAAAAAAAGAAAAAGAG
Found at i:17802898 original size:7 final size:7
Alignment explanation
Indices: 17802833--17802883 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
17802823 ATTTCACTCA
17802833 AAAAAAG
1 AAAAAAG
*
17802840 AAAGAA-
1 AAAAAAG
*
17802846 AAGAAAG
1 AAAAAAG
17802853 AAAAAAG
1 AAAAAAG
*
17802860 GAAAAAG
1 AAAAAAG
17802867 AGAAAAAG
1 A-AAAAAG
17802875 AAAAAAG
1 AAAAAAG
17802882 AA
1 AA
17802884 GGAAAAAAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 4 0.11
7 25 0.69
8 7 0.19
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:17803915 original size:49 final size:49
Alignment explanation
Indices: 17803840--17804134 Score: 301
Period size: 49 Copynumber: 6.0 Consensus size: 49
17803830 CGTTGAATAA
* * *
17803840 TATACCCTAGAAGAAATGAAGGGAAAGATTAAAGCCGCAATGGCGAATCT
1 TATACTCTAG-AGATATGAAGGGAAAGATTGAAGCCGCAATGGCGAATCT
* * *
17803890 TATACTTTAGAGATATAAAGGGAAAGATTGAAGCCGCAATGACGAATCT
1 TATACTCTAGAGATATGAAGGGAAAGATTGAAGCCGCAATGGCGAATCT
* * * ** * *
17803939 TGTACCCTAGAGATATGGAGGGAAATTTTGAAGCCGCAATGGTGAACCT
1 TATACTCTAGAGATATGAAGGGAAAGATTGAAGCCGCAATGGCGAATCT
* * * * *
17803988 TATAAC-CTAGAGATATGGAGGGAAAGGTTGAACCCGCAATGGTGAACCT
1 TAT-ACTCTAGAGATATGAAGGGAAAGATTGAAGCCGCAATGGCGAATCT
* * *
17804037 TATACTCTAGAGATGTGAAGGGAAAGATTGTAGCTGCAATGGCGAATCT
1 TATACTCTAGAGATATGAAGGGAAAGATTGAAGCCGCAATGGCGAATCT
* * *
17804086 TATACTCT-GA-AGATG-AGGAGAAGTAGATTGAAGCAGCAAAGGCGAATCT
1 TATACTCTAGAGATATGAAGG-GAA--AGATTGAAGCCGCAATGGCGAATCT
17804135 CAAAGCTGTA
Statistics
Matches: 207, Mismatches: 33, Indels: 11
0.82 0.13 0.04
Matches are distributed among these distances:
46 3 0.01
47 6 0.03
48 4 0.02
49 184 0.89
50 10 0.05
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (49 bp):
TATACTCTAGAGATATGAAGGGAAAGATTGAAGCCGCAATGGCGAATCT
Found at i:17804762 original size:99 final size:97
Alignment explanation
Indices: 17804260--17805173 Score: 600
Period size: 93 Copynumber: 9.5 Consensus size: 97
17804250 GTAACATATA
* * *
17804260 TCAATGTCCCTGAAGTTACAGTGGAATAGAAAGAAGTTACAACATCAAATCCTATACCCTTGAGT
1 TCAATGTCCCTGAGGTTACAGTGGAATGGAGAGAAGTT-CAACATCAAATCCTATACCCTTGAGT
* **
17804325 TGTAGTGGGTCGGATTAAAATAATGAGGTAGATC
65 TGTAGTGGGTCGGATTAAAACAATGA-ACAGATC
* * * * * * * *
17804359 ACAACGTCCTTGAGGTTAGAATGGAGTGGA-ATGAAG--C-AC--CAAATCCTATACCCCTGTGT
1 TCAATGTCCCTGAGGTTACAGTGGAATGGAGA-GAAGTTCAACATCAAATCCTATACCCTTGAGT
** * * *
17804418 TACAGTAGGTCAGATTAAAACAATGAGGCAGATC
65 TGTAGTGGGTCGGATTAAAACAATGA-ACAGATC
* * * * * *
17804452 TCAAAGTCCCTAAGGTTACAGTGGAGTGGAGTGAAG-----CATCAAATCCAATACCCCTGAGTT
1 TCAATGTCCCTGAGGTTACAGTGGAATGGAGAGAAGTTCAACATCAAATCCTATACCCTTGAGTT
* * * * * *
17804512 GCAGTAGGTTGGATTAAAACAATGAGGCAAATG
66 GTAGTGGGTCGGATTAAAACAATGA-ACAGATC
* * * * * ***
17804545 TCAATGTCCCTGAGGTTACAATAGAGTGGAGTGAAG-----CATTAAATCCTATATCCTCAAAAG
1 TCAATGTCCCTGAGGTTACAGTGGAATGGAGAGAAGTTCAACATCAAATCCTATA-CC-CTTGAG
** * * **
17804605 TTACAGTGGATCGGATCAAAATGA-GTAAC-GAATC
64 TTGTAGTGGGTCGGATTAAAACAATG-AACAG-ATC
* * * *
17804639 TCAATGTCCTTGAGGTTATAGTGGAATGGACAGAAGTTCCAACATCAAATCCCATACCCTTGAGT
1 TCAATGTCCCTGAGGTTACAGTGGAATGGAGAGAAGTT-CAACATCAAATCCTATACCCTTGAGT
*
17804704 TGCAGTGGGTCGGATTAAAACAATGAAGCAGATC
65 TGTAGTGGGTCGGATTAAAACAATGAA-CAGATC
* * * * *
17804738 TTAATATTCCTGAGGTTATAGTGGAATGGAGTGAAG--C-AC--CAGAA-CCTATATCCC-TGAA
1 TCAATGTCCCTGAGGTTACAGTGGAATGGAGAGAAGTTCAACATCA-AATCCTATA-CCCTTG-A
* ** *
17804796 GTTGTAGTGGATCGGATTAAAATGA-GTAACGGATC
63 GTTGTAGTGGGTCGGATTAAAACAATG-AACAGATC
* * * *
17804831 TCAATGTCCCTAAGGTTACAGTGAAATAGAGAGAAGTTACAACATCAAATCTTATACCCTTGAGT
1 TCAATGTCCCTGAGGTTACAGTGGAATGGAGAGAAGTT-CAACATCAAATCCTATACCCTTGAGT
* *
17804896 TGTAGTGGGTCGGATTAAAGCAATGAAGCGGATC
65 TGTAGTGGGTCGGATTAAAACAATGAA-CAGATC
* ** * *
17804930 TCAATGTCCCTGAGGTTACAATGGAAT----AG-AGTGAAACTTCAAATCCTAT-CTTCTTGAGG
1 TCAATGTCCCTGAGGTTACAGTGGAATGGAGAGAAGTTCAACATCAAATCCTATAC-CCTTGA-G
** * * *
17804989 TTACAGTGAAGT-GGATCAAAAC-AGGTAACAGATC
64 TTGTAGTG-GGTCGGATTAAAACAATG-AACAGATC
* * *
17805023 TCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGTTACAACACCAAATCCTATACCCATGAAG
1 TCAATGTCCCTGAGGTTACAGTGGAATGGAGAGAAGTT-CAACATCAAATCCTATACCCTTG-AG
* ** *
17805088 TTGTAGTGGGTTGGATTAAAACAAAAAAAACATATC
64 TTGTAGTGGGTCGGATTAAAAC--AATGAACAGATC
* *
17805124 TCAATGTCCTTGAGGTTACAGTGGAATGGAGAGAAGCTTCAACACCAAAT
1 TCAATGTCCCTGAGGTTACAGTGGAATGGAGAGAAG-TTCAACATCAAAT
17805174 TCCATCTTCC
Statistics
Matches: 644, Mismatches: 123, Indels: 94
0.75 0.14 0.11
Matches are distributed among these distances:
91 1 0.00
92 1 0.00
93 259 0.40
94 84 0.13
95 29 0.05
96 3 0.00
97 3 0.00
98 59 0.09
99 135 0.21
100 15 0.02
101 52 0.08
102 3 0.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (97 bp):
TCAATGTCCCTGAGGTTACAGTGGAATGGAGAGAAGTTCAACATCAAATCCTATACCCTTGAGTT
GTAGTGGGTCGGATTAAAACAATGAACAGATC
Found at i:17804890 original size:192 final size:192
Alignment explanation
Indices: 17804245--17805160 Score: 885
Period size: 192 Copynumber: 4.8 Consensus size: 192
17804235 AAATTACAGT
* * *
17804245 AATGAGTAACATATATCAATGTCCCTGAA-GTTACAGTGGAATAGAAAGAAGTTACAACATCAAA
1 AATGAGTAACAGATCTCAATGTCCCT-AAGGTTACAGTGGAATAGAGAGAAGTTACAACATCAAA
* * * * *
17804309 TCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAATAATGAGGTAGATCACAACG-TCCTTGAG
65 TCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAATGTTCC-TGAG
* * * * * * *
17804373 GTTAGAATGGAGTGGAATGAAGCACCAAATCCTATACCCCTG-TGTTACAGTAGG-TCAGATTAA
129 GTTACAATGGAATGGAGTGAAGCACCAAATCCTATATCCCTGAAGTTACAGT-GGATCGGA-T-C
17804436 AA
191 AA
* * * * *
17804438 CAATGAG--GCAGATCTCAAAGTCCCTAAGGTTACAGTGG---AGTG-G-AGTGA-AGCATCAAA
1 -AATGAGTAACAGATCTCAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAGTTACAACATCAAA
* * * * * * * * *
17804495 TCCAATACCCCTGAGTTGCAGTAGGTTGGATTAAAACAATGAGGCAAATGTCAATGTCCCTGAGG
65 TCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAATGTTCCTGAGG
* * ** **
17804560 TTACAATAGAGTGGAGTGAAGCATTAAATCCTATATCCTCAAAAGTTACAGTGGATCGGATCAA
130 TTACAATGGAATGGAGTGAAGCACCAAATCCTATATCC-CTGAAGTTACAGTGGATCGGATCAA
* * * * * *
17804624 AATGAGTAAC-GAATCTCAATGTCCTTGAGGTTATAGTGGAATGGACAGAAGTTCCAACATCAAA
1 AATGAGTAACAG-ATCTCAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAGTTACAACATCAAA
* * * *
17804688 TCCCATACCCTTGAGTTGCAGTGGGTCGGATTAAAACAATGAAGCAGATCTTAATATTCCTGAGG
65 TCCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAATGTTCCTGAGG
* * ** *
17804753 TTATAGTGGAATGGAGTGAAGCACCAGAA-CCTATATCCCTGAAGTTGTAGTGGATCGGATTAA
130 TTACAATGGAATGGAGTGAAGCACCA-AATCCTATATCCCTGAAGTTACAGTGGATCGGATCAA
* *
17804816 AATGAGTAACGGATCTCAATGTCCCTAAGGTTACAGTGAAATAGAGAGAAGTTACAACATCAAAT
1 AATGAGTAACAGATCTCAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAGTTACAACATCAAAT
* * * *
17804881 CTTATACCCTTGAGTTGTAGTGGGTCGGATTAAAGCAATGAAGCGGATCTCAATGTCCCTGAGGT
66 CCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAATGTTCCTGAGGT
* * ** * * * * *
17804946 TACAATGGAATAGAGTGAAACTTCAAATCCTATCTTCTTGAGGTTACAGTGAAGT-GGATCAA
131 TACAATGGAATGGAGTGAAGCACCAAATCCTATATCCCTGAAGTTACAGTGGA-TCGGATCAA
* * * * *
17805008 AA-CAGGTAACAGATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGTTACAACACCAAA
1 AATGA-GTAACAGATCTCAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAGTTACAACATCAAA
* * ** * *
17805072 TCCTATACCCATGAAGTTGTAGTGGGTTGGATTAAAACAAAAAAAACATATCTCAATG-TCCTTG
65 TCCTATACCCTTG-AGTTGTAGTGGGTCGGATTAAAAC-AATGAAGCAGATCTCAATGTTCC-TG
* *
17805136 AGGTTACAGTGGAATGGAGAGAAGC
127 AGGTTACAATGGAATGGAGTGAAGC
17805161 TTCAACACCA
Statistics
Matches: 587, Mismatches: 113, Indels: 44
0.79 0.15 0.06
Matches are distributed among these distances:
185 6 0.01
186 93 0.16
187 34 0.06
188 13 0.02
189 2 0.00
190 1 0.00
191 6 0.01
192 269 0.46
193 118 0.20
194 45 0.08
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (192 bp):
AATGAGTAACAGATCTCAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAGTTACAACATCAAAT
CCTATACCCTTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAATGTTCCTGAGGT
TACAATGGAATGGAGTGAAGCACCAAATCCTATATCCCTGAAGTTACAGTGGATCGGATCAA
Found at i:17805805 original size:3 final size:3
Alignment explanation
Indices: 17805797--17805822 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
17805787 TCGATTGTAA
17805797 CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CT
17805823 AGTTTTTACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:17806979 original size:12 final size:12
Alignment explanation
Indices: 17806924--17806994 Score: 56
Period size: 12 Copynumber: 5.8 Consensus size: 12
17806914 ATCCCATATA
*
17806924 TATTTTTTATATT
1 TATTATTTAT-TT
*
17806937 TATTTTTTA-TT
1 TATTATTTATTT
17806948 TATTCATTGT-TTT
1 TATT-ATT-TATTT
*
17806961 CATTATTTATTT
1 TATTATTTATTT
**
17806973 TATTATTTCGTT
1 TATTATTTATTT
17806985 TATTATTTAT
1 TATTATTTAT
17806995 CATGTCATTT
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
11 7 0.15
12 25 0.53
13 15 0.32
ACGTcount: A:0.21, C:0.04, G:0.03, T:0.72
Consensus pattern (12 bp):
TATTATTTATTT
Found at i:17807513 original size:111 final size:109
Alignment explanation
Indices: 17807369--17807585 Score: 321
Period size: 111 Copynumber: 2.0 Consensus size: 109
17807359 AAAATCAAGG
*
17807369 CAATATTCTTTTAGTTTAGGAAACTCGAGAAATTGTGCCTTAACATATTGGGTATGATTTTTTTC
1 CAATATTCTTTTAGTTTAGGAAACTCGAGAAATTGTGCCCTAACATATTGGG--T-ATTTTTTTC
*
17807434 TTTGAACCTAAGTAATCT-AATATCCTATTT-AAAATCGACAAATATT
63 TTTGAACCTAAGTAAT-TGAACATCCTATTTAAAAATCGACAAATATT
* * * *
17807480 CAATGTTCTTTTATTTTAGGGAACTCGAGAAATTGTGCCCTAACGTATTGGGTATTTTTTTCTTT
1 CAATATTCTTTTAGTTTAGGAAACTCGAGAAATTGTGCCCTAACATATTGGGTATTTTTTTCTTT
*
17807545 GAACCTAAGTAATTGAACATCCTATTTAAAAATCGATAAAT
66 GAACCTAAGTAATTGAACATCCTATTTAAAAATCGACAAAT
17807586 GTTCTTTATT
Statistics
Matches: 97, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
107 1 0.01
108 36 0.37
109 13 0.13
111 47 0.48
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (109 bp):
CAATATTCTTTTAGTTTAGGAAACTCGAGAAATTGTGCCCTAACATATTGGGTATTTTTTTCTTT
GAACCTAAGTAATTGAACATCCTATTTAAAAATCGACAAATATT
Found at i:17809861 original size:27 final size:25
Alignment explanation
Indices: 17809826--17809883 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 25
17809816 ATTTCACCCA
17809826 AAAAAGAAAA-ATAGAAAGAAAAGAAAG
1 AAAAAGAAAACA-AGAAAG-AAA-AAAG
17809853 AAAAAGAAAACAAGAAAGAAAAAAG
1 AAAAAGAAAACAAGAAAGAAAAAAG
17809878 AAAAAG
1 AAAAAG
17809884 GAGAGGTCGA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 10 0.33
26 3 0.10
27 16 0.53
28 1 0.03
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (25 bp):
AAAAAGAAAACAAGAAAGAAAAAAG
Found at i:17809881 original size:19 final size:19
Alignment explanation
Indices: 17809828--17809882 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 19
17809818 TTCACCCAAA
17809828 AAAGAAAAATAGAAAGAAAAG
1 AAAGAAAAA-AGAAA-AAAAG
*
17809849 AAAG-AAAAAGAAAACAAG
1 AAAGAAAAAAGAAAAAAAG
17809867 AAAGAAAAAAGAAAAA
1 AAAGAAAAAAGAAAAA
17809883 GGAGAGGTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.26
19 15 0.48
20 4 0.13
21 4 0.13
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (19 bp):
AAAGAAAAAAGAAAAAAAG
Found at i:17810947 original size:49 final size:49
Alignment explanation
Indices: 17810894--17811029 Score: 155
Period size: 49 Copynumber: 2.8 Consensus size: 49
17810884 TGCAATGACA
* * *
17810894 AATCTTATACCTTATAGATATAGAGGGAAAGATTGAAGCCGCAATCGTG
1 AATCTTATACCCTATAGATATAGAGGGAAAGATTGAAGCCACAATAGTG
* ** * * * * *
17810943 AATCTTGTACCCTAGCGAAATGGAAGGAAAGTTTGAAGCCATAATAGTG
1 AATCTTATACCCTATAGATATAGAGGGAAAGATTGAAGCCACAATAGTG
* *
17810992 AACCTTATACCCTATAGATCTAGAGGGAAAGATTGAAG
1 AATCTTATACCCTATAGATATAGAGGGAAAGATTGAAG
17811030 TTGCAACGAC
Statistics
Matches: 67, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
49 67 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.25
Consensus pattern (49 bp):
AATCTTATACCCTATAGATATAGAGGGAAAGATTGAAGCCACAATAGTG
Found at i:17811044 original size:49 final size:49
Alignment explanation
Indices: 17810991--17811108 Score: 121
Period size: 49 Copynumber: 2.4 Consensus size: 49
17810981 CCATAATAGT
* * *
17810991 GAACCTTATACCCTATAGATCT-AGAGGGAAAGATTGAAGTTGCAACGAC
1 GAACCTTATACCCTAAAGATCTGA-AGGGAAAGATTAAAGTCGCAACGAC
* * * * * * *
17811040 GAACCTTATACTCTAGAGTTGTGAAGGGAAAGATTAAAGTCGTAATGGC
1 GAACCTTATACCCTAAAGATCTGAAGGGAAAGATTAAAGTCGCAACGAC
*
17811089 GAATCTTATACCCTAAAGAT
1 GAACCTTATACCCTAAAGAT
17811109 GAGGAGAAGT
Statistics
Matches: 55, Mismatches: 13, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
49 54 0.98
50 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (49 bp):
GAACCTTATACCCTAAAGATCTGAAGGGAAAGATTAAAGTCGCAACGAC
Found at i:17811070 original size:98 final size:97
Alignment explanation
Indices: 17810897--17811108 Score: 212
Period size: 98 Copynumber: 2.2 Consensus size: 97
17810887 AATGACAAAT
* * * *
17810897 CTTATACCTTATAGATATAGAGGGAAAGATTGAAGCCGCAATCGTGAATCTTGTACCCTAGCGAA
1 CTTATACCCTATAGATATAGAGGGAAAGATTGAAGCCGCAATCGCGAACCTTATACCCTA-CGAA
* * *
17810962 ATGGAAGGAAAGTTTGAAGCCATAATAGTGAAC
65 ATGGAAGGAAAGATTAAAGCCATAATAGCGAAC
* ** * *
17810995 CTTATACCCTATAGATCTAGAGGGAAAGATTGAAGTTGCAA-CGACGAACCTTATACTCTA-GAG
1 CTTATACCCTATAGATATAGAGGGAAAGATTGAAGCCGCAATCG-CGAACCTTATACCCTACGAA
* * * * *
17811058 TTGTGAAGGGAAAGATTAAAGTCGTAATGGCGAAT
65 ATG-GAA-GGAAAGATTAAAGCCATAATAGCGAAC
*
17811093 CTTATACCCTAAAGAT
1 CTTATACCCTATAGAT
17811109 GAGGAGAAGT
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
96 4 0.04
97 5 0.05
98 84 0.90
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (97 bp):
CTTATACCCTATAGATATAGAGGGAAAGATTGAAGCCGCAATCGCGAACCTTATACCCTACGAAA
TGGAAGGAAAGATTAAAGCCATAATAGCGAAC
Found at i:17811350 original size:93 final size:93
Alignment explanation
Indices: 17811203--17812380 Score: 902
Period size: 93 Copynumber: 12.6 Consensus size: 93
17811193 TAAAGGGCTA
* * * * * * *
17811203 GATTAAAGCAATAAAGC-GAATCTCAATGCCCCTGAGGTTACATTGGAATAGAGTGAAGCACCAA
1 GATTAAAACAATGAAGCAG-ATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
* * *
17811267 ATCTTATACCCTTAAGTTGTGGTGGGTTG
65 ATCCTATACCCTTAAGTTGTAGTGGGTCG
* **
17811296 GATTAAAGCAATGAAGTGGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGTGAAGCA
1 GATTAAAACAATGAAGCAGATCTCAATGTCCTTGAGGTTACAGTGGAGT---G-G-AGTGAAGCA
* **
17811361 CTAAATCCTATACCCTTGAA-TTACAGTGGGTCG
61 CCAAATCCTATACCCTT-AAGTTGTAGTGGGTCG
* * * * *
17811394 AATTAAAGCAATGAAGTAGATCTCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAA
1 GATTAAAACAATGAAGCAGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAA
* **
17811459 TCCTATA-CCTCTGAGTTACAGTGGGTCG
66 TCCTATACCCT-TAAGTTGTAGTGGGTCG
* * * * * * * * * *
17811487 AATTAATATAATGAAGCGGATCTCAATG-CCTCTAAGATTACAGTGGAATAGAGTGAAACACTAA
1 GATTAAAACAATGAAGCAGATCTCAATGTCCT-TGAGGTTACAGTGGAGTGGAGTGAAGCACCAA
*
17811551 ATTCTATA-CCTCTAAGTTGTAGTGGGTCG
65 ATCCTATACCCT-TAAGTTGTAGTGGGTCG
* * * * * **
17811580 AATTAAAATAATGAAGCAGATCTCAACGTCCTTGAGATTACAATAAAGTGGAGTGAAGCACCAAA
1 GATTAAAACAATGAAGCAGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAA
* ** * **
17811645 TCTTATACCCTTAAGTTACAGTAGGTTA
66 TCCTATACCCTTAAGTTGTAGTGGGTCG
* * * * * * *
17811673 GATTAATACAATGAAGCGGATCTCAATGTCCATGTGGTTATAGTAGAATGGAGTGAAGCACCAAA
1 GATTAAAACAATGAAGCAGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAA
* * * *
17811738 TCCTATACCCCTGAGTTGTAATGGGTAG
66 TCCTATACCCTTAAGTTGTAGTGGGTCG
* *
17811766 GATTAAAACAATGAAGCAGATCTCAATATCCATGAGGTTACAGTGGAGTGGAGTGAAGCACCAAA
1 GATTAAAACAATGAAGCAGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAA
* * *
17811831 TCCTATACCCCTGAGTTGTAGTGGGCCG
66 TCCTATACCCTTAAGTTGTAGTGGGTCG
* * * ** * *
17811859 AATTAAAACAATAAAGCAAATCTCAACATCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAAA
1 GATTAAAACAATGAAGCAGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAA
17811924 TCCTATACACC-TAAGTTGTAGTGGGTCG
66 TCCTATAC-CCTTAAGTTGTAGTGGGTCG
* * * * *
17811952 GATTAAAATAATGAAGCAGATCTCAACGTCCCTGAGGTTACAATGGAGTAGAGTGAAGCACCAAA
1 GATTAAAACAATGAAGCAGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAA
* * * ** * * *
17812017 TCTTATATCCCTAAATTTACAATAGATCG
66 TCCTATA-CCCTTAAGTTGTAGTGGGTCG
* * ** * * * * * *
17812046 AATCAAAATGA-GTAA-CGGATCTCAATGTCCCTGAGGTTACAATGGAATGGAGAGAAGTTA-C-
1 GATTAAAACAATG-AAGCAGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAG-CACCA
* * * *
17812107 -A----ATACCCCTGAGTTGCAGTGGGTCA
64 AATCCTATACCCTTAAGTTGTAGTGGGTCG
** * * * * **
17812132 GATTAAAACAATGAAATAGATCTCAACGTCCTTAAGGTTACAATGGAGTGGAGTGAAACTTCAAA
1 GATTAAAACAATGAAGCAGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAA
* * * ** *
17812197 TCCTGT-CTTCTTGAGGTTACAGTGAAGT-G
66 TCCTATAC-CCTT-AAGTTGTAGTG-GGTCG
* * * *
17812226 GATCAAAAC-ATGTAA-CAGATCTAAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGTTACAA
1 GATTAAAACAATG-AAGCAGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAG------
* *
17812289 CACCAAATCCTATACCCTTAAGTTGCAGTGAGTCG
59 CACCAAATCCTATACCCTTAAGTTGTAGTGGGTCG
* * *
17812324 GATTAAAATAATGAAGCAGATCTCAACGT-CTCTGATGTTACAGTGGAGTGGAGTGAA
1 GATTAAAACAATGAAGCAGATCTCAATGTCCT-TGAGGTTACAGTGGAGTGGAGTGAA
17812381 ACTTCAAATC
Statistics
Matches: 877, Mismatches: 167, Indels: 76
0.78 0.15 0.07
Matches are distributed among these distances:
86 21 0.02
87 39 0.04
89 1 0.00
91 1 0.00
92 8 0.01
93 598 0.68
94 50 0.06
95 3 0.00
97 4 0.00
98 99 0.11
99 52 0.06
100 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (93 bp):
GATTAAAACAATGAAGCAGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAA
TCCTATACCCTTAAGTTGTAGTGGGTCG
Found at i:17811437 original size:50 final size:49
Alignment explanation
Indices: 17811288--17811445 Score: 128
Period size: 50 Copynumber: 3.2 Consensus size: 49
17811278 TTAAGTTGTG
* *
17811288 GTGGGTTGGATTAAAGCAATGAAGTGGATCTCAATGTCCTTGAGGTTACA
1 GTGGG-TGGATTAAAGCAATGAAGTAGATCTCAACGTCCTTGAGGTTACA
* * * * * * *
17811338 GTGGAGTGGAGTGAAGTGAA-GCACTAAATC-CTATAC--CCTTGA-ATTACA
1 GTGG-GTGGATTAAAG-CAATGAAGTAGATCTC-A-ACGTCCTTGAGGTTACA
*
17811386 GTGGGTCGAATTAAAGCAATGAAGTAGATCTCAACGTCCTTGAGGTTACA
1 GTGGGT-GGATTAAAGCAATGAAGTAGATCTCAACGTCCTTGAGGTTACA
17811436 GTGGAGTGGA
1 GTGG-GTGGA
17811446 GTGAAGCACT
Statistics
Matches: 79, Mismatches: 18, Indels: 22
0.66 0.15 0.18
Matches are distributed among these distances:
47 6 0.08
48 23 0.29
49 14 0.18
50 30 0.38
51 6 0.08
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (49 bp):
GTGGGTGGATTAAAGCAATGAAGTAGATCTCAACGTCCTTGAGGTTACA
Found at i:17812067 original size:372 final size:369
Alignment explanation
Indices: 17811222--17812380 Score: 1119
Period size: 372 Copynumber: 3.1 Consensus size: 369
17811212 AATAAAGCGA
* * * * * * **
17811222 ATCTCAATGCCCCTGAGGTTACATTGGAATAGAGTGAAGCACCAAATCTTATACCCTTAAGTTGT
1 ATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAATCTTATACCCTAAAGTTAC
** * * * * ** * * *
17811287 GGTGGGTTGGATTAA-AGCAATGAAGTGGATCTCAATGTCCTTGAGGTTACAGTGGAGTGGAGTG
66 AATAGGATAGAATAATA-CAATGAAACGGATCTCAATGTCCATGAGGTTACA----A-TAGAATG
* * * * * * * *
17811351 AAGTGAAGCACTAAATCCTATACCCTTGAATTACAGTGGGTCGAATTAAAGCAATGAAGTAGATC
125 GAGTGAAGCACCAAATCCTATACCCCTGAGTTGCAGTGGGTAGGATTAAAACAATGAAGTAGATC
* *
17811416 TCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAATCCTATACCTCTGAGTTACAGT
190 TCAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCCTGAGTTACAGT
* * * * * * *
17811481 GGGTCGAATTAATATAATGAAGCGGATCTC-AATGCCTCTAAGATTACAGTGGAATAGAGTGAAA
255 GGG-CGAATTAAAACAATAAAGCAGATCTCAAAT-CC-CTAAGGTTACAGTGGAATGGAGTGAAG
* * *
17811545 CACTAAATTCTATACCTCTAAGTTGTAGTGGGTCGAATTAAAATAATGAAGCAG
317 CACCAAATCCTATACC-CTAAGTTGTAGTGGGTCGGATTAAAATAATGAAGCAG
* * ** *
17811599 ATCTCAACGTCCTTGAGATTACAATAAAGTGGAGTGAAGCACCAAATCTTATACCCTTAAGTTAC
1 ATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAATCTTATACCCTAAAGTTAC
* * * * * * *
17811664 AGTAGGTTAGATTAATACAATGAAGCGGATCTCAATGTCCATGTGGTTATAGTAGAATGGAGTGA
66 AATAGGATAGAATAATACAATGAAACGGATCTCAATGTCCATGAGGTTACAATAGAATGGAGTGA
* * * **
17811729 AGCACCAAATCCTATACCCCTGAGTTGTAATGGGTAGGATTAAAACAATGAAGCAGATCTCAATA
131 AGCACCAAATCCTATACCCCTGAGTTGCAGTGGGTAGGATTAAAACAATGAAGTAGATCTCAACG
* **
17811794 TCCATGAGGTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCCTGAGTTGTAGTGGGCCG
196 TCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCCTGAGTTACAGTGGG-CG
* *
17811859 AATTAAAACAATAAAGCAAATCTCAACATCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAAA
260 AATTAAAACAATAAAGCAGATCTCAA-ATCCCTAAGGTTACAGTGGAATGGAGTGAAGCACCAAA
17811924 TCCTATACACCTAAGTTGTAGTGGGTCGGATTAAAATAATGAAGCAG
324 TCCTATAC-CCTAAGTTGTAGTGGGTCGGATTAAAATAATGAAGCAG
* *
17811971 ATCTCAACGTCCCTGAGGTTACAATGGAGTAGAGTGAAGCACCAAATCTTATATCCCTAAATTTA
1 ATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAATCTTATA-CCCTAAAGTTA
* * * *
17812036 CAATA-GATCGAATCA-A-AATGAGTAACGGATCTCAATGTCCCTGAGGTTACAATGGAATGGAG
65 CAATAGGATAGAATAATACAATGA--AACGGATCTCAATGTCCATGAGGTTACAATAGAATGGAG
* * *
17812098 AGAAGTTA-C--A----ATACCCCTGAGTTGCAGTGGGTCA-GATTAAAACAATGAAATAGATCT
128 TGAAG-CACCAAATCCTATACCCCTGAGTTGCAGTGGGT-AGGATTAAAACAATGAAGTAGATCT
* * * ** * * *
17812155 CAACGTCCTTAAGGTTACAATGGAGTGGAGTGAAACTTCAAATCCTGT-CTTCTTGAGGTTACAG
191 CAACGTCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATAC-CCCTGA-GTTACAG
* * * * * *
17812219 TGAAGTGGATCAAAAC-ATGTAA-CAGATCT-AAATGTCCCTGAGGTTACAGTGGAATGGAGTGA
254 TG-GGCGAATTAAAACAAT-AAAGCAGATCTCAAA--TCCCTAAGGTTACAGTGGAATGGAGTGA
* *
17812281 AGTTACAACACCAAATCCTATACCCTTAAGTTGCAGTGAGTCGGATTAAAATAATGAAGCAG
315 AG------CACCAAATCCTATACCC-TAAGTTGTAGTGGGTCGGATTAAAATAATGAAGCAG
* * *
17812343 ATCTCAACGTCTCTGATGTTACAGTGGAGTGGAGTGAA
1 ATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAA
17812381 ACTTCAAATC
Statistics
Matches: 657, Mismatches: 103, Indels: 49
0.81 0.13 0.06
Matches are distributed among these distances:
364 1 0.00
365 3 0.00
366 120 0.18
367 18 0.03
368 1 0.00
370 6 0.01
371 3 0.00
372 388 0.59
373 18 0.03
374 2 0.00
377 96 0.15
378 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (369 bp):
ATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAATCTTATACCCTAAAGTTAC
AATAGGATAGAATAATACAATGAAACGGATCTCAATGTCCATGAGGTTACAATAGAATGGAGTGA
AGCACCAAATCCTATACCCCTGAGTTGCAGTGGGTAGGATTAAAACAATGAAGTAGATCTCAACG
TCCTTGAGGTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCCTGAGTTACAGTGGGCGA
ATTAAAACAATAAAGCAGATCTCAAATCCCTAAGGTTACAGTGGAATGGAGTGAAGCACCAAATC
CTATACCCTAAGTTGTAGTGGGTCGGATTAAAATAATGAAGCAG
Found at i:17812895 original size:6 final size:7
Alignment explanation
Indices: 17812881--17812931 Score: 54
Period size: 7 Copynumber: 7.3 Consensus size: 7
17812871 AGAAAGACCC
17812881 AAAGACA
1 AAAGACA
17812888 AAAG-CA
1 AAAGACA
17812894 AAAGAC-
1 AAAGACA
17812900 AAAGAACA
1 AAAG-ACA
17812908 ACAAGACA
1 A-AAGACA
17812916 AAAG-CA
1 AAAGACA
17812922 AGAAGACA
1 A-AAGACA
17812930 AA
1 AA
17812932 TGTAATTGGC
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
6 13 0.34
7 14 0.37
8 8 0.21
9 3 0.08
ACGTcount: A:0.69, C:0.16, G:0.16, T:0.00
Consensus pattern (7 bp):
AAAGACA
Found at i:17812929 original size:14 final size:13
Alignment explanation
Indices: 17812881--17812931 Score: 66
Period size: 14 Copynumber: 3.7 Consensus size: 13
17812871 AGAAAGACCC
17812881 AAAGACAAAAGCA
1 AAAGACAAAAGCA
*
17812894 AAAGACAAAGAACA
1 AAAGACAAA-AGCA
17812908 ACAAGACAAAAGCA
1 A-AAGACAAAAGCA
17812922 AGAAGACAAA
1 A-AAGACAAA
17812932 TGTAATTGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
13 9 0.27
14 16 0.48
15 8 0.24
ACGTcount: A:0.69, C:0.16, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAGACAAAAGCA
Found at i:17813085 original size:25 final size:23
Alignment explanation
Indices: 17813045--17813093 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
17813035 TAGTTCACTG
17813045 TTTTAGTATTTTTTTTACATATA
1 TTTTAGTATTTTTTTTACATATA
* *
17813068 TTTTATTATTTTTATTT-TATATA
1 TTTTAGTATTTTT-TTTACATATA
17813091 TTT
1 TTT
17813094 CGAAAACAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 20 0.87
24 3 0.13
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTTAGTATTTTTTTTACATATA
Found at i:17831003 original size:671 final size:670
Alignment explanation
Indices: 17828801--17831482 Score: 5319
Period size: 670 Copynumber: 4.0 Consensus size: 670
17828791 GGTTCCCAAC
17828801 ATTCAAATTTTAGTTAAATTGGTTTTTGTGGATGGAAAAATGAATGGAACTATTAAAATTTTAGT
1 ATTCAAATTTTAGTTAAATTGGTTTTTGTGGATGGAAAAATGAATGGAACTATTAAAATTTTAGT
17828866 GGCATAATGTGGTAGTTTACATGATTGTTTATGTGTACTTCATTTTTGAAGTGGATAGTTTGTTT
66 GGCATAATGTGGTAGTTTACATGATTGTTTATGTGTACTTCATTTTTGAAGTGGATAGTTTGTTT
17828931 AACTTTTTAAATTTATCAAATTCTAATTATTTCTTGAAATTTCATGAAGAACATTTAGACACTAC
131 AACTTTTTAAATTTATCAAATTCTAATTATTTCTTGAAATTTCATGAAGAACATTTAGACACTAC
17828996 ATAAATTGGCATGTTAATGCCATTATAATTTTAATAATTTAGACAACTTTTCACTTAAAAAAAAG
196 ATAAATTGGCATGTTAATGCCATTATAATTTTAATAATTTAGACAACTTTTCACTTAAAAAAAAG
17829061 TAATTGGACTAAAATTTGAAGGGTAAGGGCCAAAGTGTTTAAAAAAAAAATTATGGTCAAAATGA
261 TAATTGGACTAAAATTTGAAGGGTAAGGGCCAAAGTGTTTAAAAAAAAAATTATGGTCAAAATGA
*
17829126 CAAGAAAGATAAATTTCAGGTGTTAACTTTATCATTATGCCAAAGTAAAATGTTATCATTTATAG
326 CAAGAAAGATAAACTTCAGGTGTTAACTTTATCATTATGCCAAAGTAAAATGTTATCATTTATAG
17829191 GTTTGAAAGATATTTTATATTCAAATAATCCATAAGTTTAAGATGTTTATGATATATAAGATTCA
391 GTTTGAAAGATATTTTATATTCAAATAATCCATAAGTTTAAGATGTTTATGATATATAAGATTCA
17829256 TTATTTATTAACCAACTAAAATAATTAATTATAACTAATAATATGTAAAAATTACTTAATTATAA
456 TTATTTATTAACCAACTAAAATAATTAATTATAACTAATAATATGTAAAAATTACTTAATTATAA
17829321 AAAACATATAATTTCATAATAAATAAAACAATTTATATATAAAATCATTAAACTAATTAAAAATA
521 AAAACATATAATTTCATAATAAATAAAACAATTTATATATAAAATCATTAAACTAATTAAAAATA
17829386 TAATTCAAATTAGCCATAATTCTCATAATGTATACTTTTTTCAAAGAAAACCTTATTATAAATTA
586 TAATTCAAATTAGCCATAATTCTCATAATGTATACTTTTTTCAAAGAAAACCTTATTATAAATTA
17829451 ATTAAATATTGTTATATATT
651 ATTAAATATTGTTATATATT
17829471 ATTCAAATTTTAGTTAAATTGGTTTTTGTGGATGGAAAAATGAATGGAACTATTAAAATTTTAGT
1 ATTCAAATTTTAGTTAAATTGGTTTTTGTGGATGGAAAAATGAATGGAACTATTAAAATTTTAGT
17829536 GGCATAATGTGGTAGTTTACATGATTGTTTATGTGTACTTCATTTTTGAAGTGGATAGTTTGTTT
66 GGCATAATGTGGTAGTTTACATGATTGTTTATGTGTACTTCATTTTTGAAGTGGATAGTTTGTTT
17829601 AACTTTTTAAATTTATCAAATTCTAATTATTTCTTGAAATTTCATGAAGAACATTTAGACACTAC
131 AACTTTTTAAATTTATCAAATTCTAATTATTTCTTGAAATTTCATGAAGAACATTTAGACACTAC
17829666 ATAAATTGGCATGTTAATGCCATTATAATTTTAATAATTTAGACAACTTTTCACTTAAAAAAAAG
196 ATAAATTGGCATGTTAATGCCATTATAATTTTAATAATTTAGACAACTTTTCACTTAAAAAAAAG
17829731 TAATTGGACTAAAATTTGAAGGGTAAGGGCCAAAGTGTTTAAAAAAAAAATTATGGTCAAAATGA
261 TAATTGGACTAAAATTTGAAGGGTAAGGGCCAAAGTGTTTAAAAAAAAAATTATGGTCAAAATGA
*
17829796 CAAGAAAGATAAATTTCAGGTGTTAACTTTATCATTATGCCAAAGTAAAATGTTATCATTTATAG
326 CAAGAAAGATAAACTTCAGGTGTTAACTTTATCATTATGCCAAAGTAAAATGTTATCATTTATAG
17829861 GTTTGAAAGATATTTTATATTCAAATAATCCATAAGTTTAAGATGTTTATGATATATAAGATTCA
391 GTTTGAAAGATATTTTATATTCAAATAATCCATAAGTTTAAGATGTTTATGATATATAAGATTCA
17829926 TTATTTATTAACCAACTAAAATAATTAATTATAACTAATAATATGTAAAAATTACTTAATTATAA
456 TTATTTATTAACCAACTAAAATAATTAATTATAACTAATAATATGTAAAAATTACTTAATTATAA
17829991 AAAACATATAATTTCATAATAAATAAAACAATTTATATATAAAATCATTAAACTAATTAAAAATA
521 AAAACATATAATTTCATAATAAATAAAACAATTTATATATAAAATCATTAAACTAATTAAAAATA
17830056 TAATTCAAATTAGCCATAATTCTCATAATGTATACTTTTTTCAAAGAAAACCTTATTATAAATTA
586 TAATTCAAATTAGCCATAATTCTCATAATGTATACTTTTTTCAAAGAAAACCTTATTATAAATTA
17830121 ATTAAATATTGTTATATATT
651 ATTAAATATTGTTATATATT
17830141 ATTCAAATTTTAGTTAAATTGGTTTTTGTGGATGGAAAAATGAATGGAACTATTAAAATTTTAGT
1 ATTCAAATTTTAGTTAAATTGGTTTTTGTGGATGGAAAAATGAATGGAACTATTAAAATTTTAGT
17830206 GGCATAATGTGGTAGTTTACATGATTGTTTATGTGTACTTCATTTTTGAAGTGGATAGTTTGTTT
66 GGCATAATGTGGTAGTTTACATGATTGTTTATGTGTACTTCATTTTTGAAGTGGATAGTTTGTTT
17830271 AACTTTTTAAATTTATCAAATTCTAATTATTTCTTGAAATTTCATGAAGAACATTTAGACACTAC
131 AACTTTTTAAATTTATCAAATTCTAATTATTTCTTGAAATTTCATGAAGAACATTTAGACACTAC
17830336 ATAAATTGGCATGTTAATGCCATTATAATTTTAATAATTTAGACAACTTTTCACTTAAAAAAAAG
196 ATAAATTGGCATGTTAATGCCATTATAATTTTAATAATTTAGACAACTTTTCACTTAAAAAAAAG
17830401 TAATTGGACTAAAATTTGAAGGGTAAGGGCCAAAGTGTTTAAAAAAAAAATTATGGTCAAAATGA
261 TAATTGGACTAAAATTTGAAGGGTAAGGGCCAAAGTGTTTAAAAAAAAAATTATGGTCAAAATGA
17830466 CAAGAAAGATAAACTTCAGGTGTTAACTTTATCATTATGCCAAAGTAAAATGTTATCATTTATAG
326 CAAGAAAGATAAACTTCAGGTGTTAACTTTATCATTATGCCAAAGTAAAATGTTATCATTTATAG
17830531 GTTTGAAAGATATTTTATATTCAAATAATCCATAAGTTTAAGATGTTTATGATATATAAGATTCA
391 GTTTGAAAGATATTTTATATTCAAATAATCCATAAGTTTAAGATGTTTATGATATATAAGATTCA
17830596 TTATTTATTAACCAACTAAAATAATTAATTATAACTAATAATATGTAAAAATTACTTAATTATAA
456 TTATTTATTAACCAACTAAAATAATTAATTATAACTAATAATATGTAAAAATTACTTAATTAT-A
17830661 AAAAACATATAATTTCATAATAAATAAAACAATTTATATATAAAATCATTAAACTAATTAAAAAT
520 AAAAACATATAATTTCATAATAAATAAAACAATTTATATATAAAATCATTAAACTAATTAAAAAT
17830726 ATAATTCAAATTAGCCATAATTCTCATAATGTATACTTTTTTCAAAGAAAACCTTATTATAAATT
585 ATAATTCAAATTAGCCATAATTCTCATAATGTATACTTTTTTCAAAGAAAACCTTATTATAAATT
17830791 AATTAAATATTGTTATATATT
650 AATTAAATATTGTTATATATT
17830812 ATTCAAATTTTAGTTAAATTGGTTTTTGTGGATGGAAAAATGAATGGAACTATTAAAATTTTAGT
1 ATTCAAATTTTAGTTAAATTGGTTTTTGTGGATGGAAAAATGAATGGAACTATTAAAATTTTAGT
17830877 GGCATAATGTGGTAGTTTACATGATTGTTTATGTGTACTTCATTTTTGAAGTGGATAGTTTGTTT
66 GGCATAATGTGGTAGTTTACATGATTGTTTATGTGTACTTCATTTTTGAAGTGGATAGTTTGTTT
17830942 AACTTTTTAAATTTATCAAATTCTAATTATTTCTTGAAATTTCATGAAGAACATTTAGACACTAC
131 AACTTTTTAAATTTATCAAATTCTAATTATTTCTTGAAATTTCATGAAGAACATTTAGACACTAC
17831007 ATAAATTGGCATGTTAATGCCATTATAATTTTAATAATTTAGACAACTTTTCACTTAAAAAAAAG
196 ATAAATTGGCATGTTAATGCCATTATAATTTTAATAATTTAGACAACTTTTCACTTAAAAAAAAG
17831072 TAATTGGACTAAAATTTGAAGGGTAAGGGCCAAAGTGTTTAAAAAAAAAATTATGGTCAAAATGA
261 TAATTGGACTAAAATTTGAAGGGTAAGGGCCAAAGTGTTTAAAAAAAAAATTATGGTCAAAATGA
* *
17831137 CAAGAAAGATAAACTTCAGGTGTTAACTTTATTATTATGCCAAAGTAAAATGTTATCATTTATAA
326 CAAGAAAGATAAACTTCAGGTGTTAACTTTATCATTATGCCAAAGTAAAATGTTATCATTTATAG
17831202 GTTTGAAAGATATTTTATATTCAAATAATCCATAAGTTTAAGATGTTTATGATATATAAGATTCA
391 GTTTGAAAGATATTTTATATTCAAATAATCCATAAGTTTAAGATGTTTATGATATATAAGATTCA
17831267 TTATTTATTAACCAACTAAAATAATTAATTATAACTAATAATATGTAAAAATTACTTAATTATAA
456 TTATTTATTAACCAACTAAAATAATTAATTATAACTAATAATATGTAAAAATTACTTAATTATAA
17831332 AAAACATATAATTTCATAATAAATAAAACAATTTATATATAAAATCATTAAACTAATTAAAAATA
521 AAAACATATAATTTCATAATAAATAAAACAATTTATATATAAAATCATTAAACTAATTAAAAATA
17831397 TAATTCAAATTAGCCATAATTCTCATAATGTATACTTTTTTCAAAGAAAACCTTATTATAAATTA
586 TAATTCAAATTAGCCATAATTCTCATAATGTATACTTTTTTCAAAGAAAACCTTATTATAAATTA
17831462 ATTAAATATTGTTATATATT
651 ATTAAATATTGTTATATATT
17831482 A
1 A
17831483 ATTATATACC
Statistics
Matches: 2008, Mismatches: 3, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
670 1340 0.67
671 668 0.33
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (670 bp):
ATTCAAATTTTAGTTAAATTGGTTTTTGTGGATGGAAAAATGAATGGAACTATTAAAATTTTAGT
GGCATAATGTGGTAGTTTACATGATTGTTTATGTGTACTTCATTTTTGAAGTGGATAGTTTGTTT
AACTTTTTAAATTTATCAAATTCTAATTATTTCTTGAAATTTCATGAAGAACATTTAGACACTAC
ATAAATTGGCATGTTAATGCCATTATAATTTTAATAATTTAGACAACTTTTCACTTAAAAAAAAG
TAATTGGACTAAAATTTGAAGGGTAAGGGCCAAAGTGTTTAAAAAAAAAATTATGGTCAAAATGA
CAAGAAAGATAAACTTCAGGTGTTAACTTTATCATTATGCCAAAGTAAAATGTTATCATTTATAG
GTTTGAAAGATATTTTATATTCAAATAATCCATAAGTTTAAGATGTTTATGATATATAAGATTCA
TTATTTATTAACCAACTAAAATAATTAATTATAACTAATAATATGTAAAAATTACTTAATTATAA
AAAACATATAATTTCATAATAAATAAAACAATTTATATATAAAATCATTAAACTAATTAAAAATA
TAATTCAAATTAGCCATAATTCTCATAATGTATACTTTTTTCAAAGAAAACCTTATTATAAATTA
ATTAAATATTGTTATATATT
Found at i:17836877 original size:21 final size:22
Alignment explanation
Indices: 17836829--17836884 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
17836819 TAGTGCAGAC
**
17836829 TTCTACCGATACAAGTGACAGT
1 TTCTACCGATACAAAAGACAGT
*
17836851 TT-TACCGATACAAAAGAC-TT
1 TTCTACCGATACAAAAGACAGT
*
17836871 TTCTACCGAAACAA
1 TTCTACCGATACAA
17836885 GTCATACATC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 3 0.10
21 24 0.83
22 2 0.07
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (22 bp):
TTCTACCGATACAAAAGACAGT
Found at i:17839519 original size:18 final size:18
Alignment explanation
Indices: 17839496--17839537 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
17839486 CTTTGTCTTC
17839496 GATCTCGTGTACCAAGTT
1 GATCTCGTGTACCAAGTT
17839514 GATCTCGTGTACCAAGTT
1 GATCTCGTGTACCAAGTT
*
17839532 GGTCTC
1 GATCTC
17839538 AACCAACTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (18 bp):
GATCTCGTGTACCAAGTT
Found at i:17842197 original size:29 final size:29
Alignment explanation
Indices: 17842165--17842223 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
17842155 ACACCTTGTA
*
17842165 TGATATTATTTTATGTTGTGTTATC-TATG
1 TGATATTATTCTATGTTGTG-TATCGTATG
* *
17842194 TGATTTTATTCTGTGTTGTGTATCGTATG
1 TGATATTATTCTATGTTGTGTATCGTATG
17842223 T
1 T
17842224 TGAAACTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 4 0.15
29 22 0.85
ACGTcount: A:0.17, C:0.05, G:0.20, T:0.58
Consensus pattern (29 bp):
TGATATTATTCTATGTTGTGTATCGTATG
Found at i:17844221 original size:12 final size:13
Alignment explanation
Indices: 17844204--17844233 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
17844194 ACAAACATAA
17844204 TTTTTCTTCT-TC
1 TTTTTCTTCTCTC
17844216 TTTTTCTTCTCTC
1 TTTTTCTTCTCTC
17844229 TTTTT
1 TTTTT
17844234 TTTATCTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTCTTCTCTC
Found at i:17844870 original size:17 final size:18
Alignment explanation
Indices: 17844832--17844876 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
17844822 TAAATTAACA
*
17844832 AAAAATACAATGACAAAAT
1 AAAAATGCAATGAC-AAAT
17844851 AAAAATGCAATGAC-AAT
1 AAAAATGCAATGACAAAT
*
17844868 AAAGATGCA
1 AAAAATGCA
17844877 TGCAAACTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 11 0.46
19 13 0.54
ACGTcount: A:0.62, C:0.11, G:0.11, T:0.16
Consensus pattern (18 bp):
AAAAATGCAATGACAAAT
Found at i:17853366 original size:26 final size:26
Alignment explanation
Indices: 17853327--17853460 Score: 205
Period size: 26 Copynumber: 5.2 Consensus size: 26
17853317 TGCTAATCAA
* * *
17853327 AGAGCACTACACGTGCTAAGTAACGG
1 AGAGCACAATACGTGCTAAATAACGG
* *
17853353 TGAGCACAATACGTGCTAAATAACGA
1 AGAGCACAATACGTGCTAAATAACGG
*
17853379 AGAGCACAATACATGCTAAATAACGG
1 AGAGCACAATACGTGCTAAATAACGG
*
17853405 AGAGCACAATACATGCTAAATAACGG
1 AGAGCACAATACGTGCTAAATAACGG
17853431 AGAGCACAATACGTGCTAAATAACGG
1 AGAGCACAATACGTGCTAAATAACGG
17853457 AGAG
1 AGAG
17853461 GGCGCTAAGG
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 99 1.00
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.16
Consensus pattern (26 bp):
AGAGCACAATACGTGCTAAATAACGG
Found at i:17858285 original size:24 final size:24
Alignment explanation
Indices: 17858256--17858397 Score: 117
Period size: 24 Copynumber: 5.8 Consensus size: 24
17858246 ATAATTATGT
17858256 GTTTACGCTCGTCAGCTTGCACAC
1 GTTTACGCTCGTCAGCTTGCACAC
** **
17858280 GTTTACGCTCGTCAGCTTATTTATGC
1 GTTTACGCTCGTCAGC-T-TGCACAC
*
17858306 GTTTACGCTCGTCAACTTGCACAC
1 GTTTACGCTCGTCAGCTTGCACAC
* * * *
17858330 ATTTACGCTCGTCAGATT-AATTATGC
1 GTTTACGCTCGTCAGCTTGCA-CA--C
*
17858356 GTTTACGCTC-TCCAACTTGCACAC
1 GTTTACGCTCGT-CAGCTTGCACAC
*
17858380 ATTTACGCTCGTCAGCTT
1 GTTTACGCTCGTCAGCTT
17858398 AATTATGCAT
Statistics
Matches: 89, Mismatches: 21, Indels: 16
0.71 0.17 0.13
Matches are distributed among these distances:
23 1 0.01
24 50 0.56
25 4 0.04
26 33 0.37
27 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.17, T:0.35
Consensus pattern (24 bp):
GTTTACGCTCGTCAGCTTGCACAC
Found at i:17858289 original size:50 final size:50
Alignment explanation
Indices: 17858247--17858601 Score: 397
Period size: 50 Copynumber: 7.2 Consensus size: 50
17858237 CTCTTTATCA
* *
17858247 TAATTATGTGTTTACGCTCGTCAGCTTGCACACGTTTACGCTCGTCAGCT
1 TAATTATGCGTTTACGCTCGTCAACTTGCACACGTTTACGCTCGTCAGCT
* * *
17858297 TATTTATGCGTTTACGCTCGTCAACTTGCACACATTTACGCTCGTCAGAT
1 TAATTATGCGTTTACGCTCGTCAACTTGCACACGTTTACGCTCGTCAGCT
*
17858347 TAATTATGCGTTTACGCTC-TCCAACTTGCACACATTTACGCTCGTCAGCT
1 TAATTATGCGTTTACGCTCGT-CAACTTGCACACGTTTACGCTCGTCAGCT
*
17858397 TAATTATGCATTTACG--C-T---C--G-ACACGTTTACGCTCGTCAGCT
1 TAATTATGCGTTTACGCTCGTCAACTTGCACACGTTTACGCTCGTCAGCT
* * * *
17858438 TAATTATGCATTTACGCTCGCCAACTTGCATACGTTTACACTCGTCAGCT
1 TAATTATGCGTTTACGCTCGTCAACTTGCACACGTTTACGCTCGTCAGCT
* * * * *
17858488 TAATTATGTGTTTATGCTCCTCAGCTTGCACACGTTTACACTCGTCAGCT
1 TAATTATGCGTTTACGCTCGTCAACTTGCACACGTTTACGCTCGTCAGCT
* * * *
17858538 TAACTATGCGTTTACGCTTACGCTCGCCAACTTGCACATGTTTATGCTCGTAAGCT
1 TAATTATGCGTTTACGC-T-CG-T---CAACTTGCACACGTTTACGCTCGTCAGCT
17858594 TAATTATG
1 TAATTATG
17858602 TACTTATTCA
Statistics
Matches: 260, Mismatches: 29, Indels: 26
0.83 0.09 0.08
Matches are distributed among these distances:
41 36 0.14
42 1 0.00
43 1 0.00
44 1 0.00
47 1 0.00
48 2 0.01
49 2 0.01
50 182 0.70
51 1 0.00
52 1 0.00
53 1 0.00
56 31 0.12
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.35
Consensus pattern (50 bp):
TAATTATGCGTTTACGCTCGTCAACTTGCACACGTTTACGCTCGTCAGCT
Found at i:17858315 original size:26 final size:26
Alignment explanation
Indices: 17858281--17858416 Score: 93
Period size: 26 Copynumber: 5.4 Consensus size: 26
17858271 CTTGCACACG
*
17858281 TTTACGCTCGTCAGCTTATTTATGCG
1 TTTACGCTCGTCAGCTTATTTATGCA
* ** **
17858307 TTTACGCTCGTCAAC-T-TGCACACA
1 TTTACGCTCGTCAGCTTATTTATGCA
* * *
17858331 TTTACGCTCGTCAGATTAATTATGCG
1 TTTACGCTCGTCAGCTTATTTATGCA
* ** **
17858357 TTTACGCTC-TCCAAC-T-TGCACACA
1 TTTACGCTCGT-CAGCTTATTTATGCA
*
17858381 TTTACGCTCGTCAGCTTAATTATGCA
1 TTTACGCTCGTCAGCTTATTTATGCA
17858407 TTTACGCTCG
1 TTTACGCTCG
17858417 ACACGTTTAC
Statistics
Matches: 76, Mismatches: 28, Indels: 12
0.66 0.24 0.10
Matches are distributed among these distances:
24 30 0.39
25 6 0.08
26 40 0.53
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.36
Consensus pattern (26 bp):
TTTACGCTCGTCAGCTTATTTATGCA
Found at i:17858438 original size:41 final size:41
Alignment explanation
Indices: 17858376--17858457 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
17858366 TCCAACTTGC
17858376 ACACATTTACGCTCGTCAGCTTAATTATGCATTTACGCTCG
1 ACACATTTACGCTCGTCAGCTTAATTATGCATTTACGCTCG
*
17858417 ACACGTTTACGCTCGTCAGCTTAATTATGCATTTACGCTCG
1 ACACATTTACGCTCGTCAGCTTAATTATGCATTTACGCTCG
17858458 CCAACTTGCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (41 bp):
ACACATTTACGCTCGTCAGCTTAATTATGCATTTACGCTCG
Found at i:17858486 original size:91 final size:91
Alignment explanation
Indices: 17858326--17858495 Score: 277
Period size: 91 Copynumber: 1.9 Consensus size: 91
17858316 GTCAACTTGC
* * *
17858326 ACACATTTACGCTCGTCAGATTAATTATGCGTTTACGCTCTCCAACTTGCACACATTTACGCTCG
1 ACACATTTACGCTCGTCAGATTAATTATGCATTTACGCTCGCCAACTTGCACACATTTACACTCG
17858391 TCAGCTTAATTATGCATTTACGCTCG
66 TCAGCTTAATTATGCATTTACGCTCG
* * * *
17858417 ACACGTTTACGCTCGTCAGCTTAATTATGCATTTACGCTCGCCAACTTGCATACGTTTACACTCG
1 ACACATTTACGCTCGTCAGATTAATTATGCATTTACGCTCGCCAACTTGCACACATTTACACTCG
17858482 TCAGCTTAATTATG
66 TCAGCTTAATTATG
17858496 TGTTTATGCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 72 1.00
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (91 bp):
ACACATTTACGCTCGTCAGATTAATTATGCATTTACGCTCGCCAACTTGCACACATTTACACTCG
TCAGCTTAATTATGCATTTACGCTCG
Found at i:17858500 original size:26 final size:25
Alignment explanation
Indices: 17858420--17858552 Score: 85
Period size: 26 Copynumber: 5.3 Consensus size: 25
17858410 ACGCTCGACA
*
17858420 CGTTTACGCTCGTCAGCTTAATTATG
1 CGTTTACACTCGTCAGCTTAA-TATG
* * * * *
17858446 CATTTACGCTCGCCAACTTGCATA--
1 CGTTTACACTCGTCAGCTT-AATATG
17858470 CGTTTACACTCGTCAGCTTAATTATG
1 CGTTTACACTCGTCAGCTTAA-TATG
* ** * * *
17858496 TGTTTATGCTCCTCAGCTTGCACA--
1 CGTTTACACTCGTCAGCTT-AATATG
17858520 CGTTTACACTCGTCAGCTTAACTATG
1 CGTTTACACTCGTCAGCTTAA-TATG
17858546 CGTTTAC
1 CGTTTAC
17858553 GCTTACGCTC
Statistics
Matches: 78, Mismatches: 21, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
23 2 0.03
24 33 0.42
26 41 0.53
27 2 0.03
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (25 bp):
CGTTTACACTCGTCAGCTTAATATG
Found at i:17858532 original size:141 final size:141
Alignment explanation
Indices: 17858276--17858555 Score: 418
Period size: 141 Copynumber: 2.0 Consensus size: 141
17858266 GTCAGCTTGC
* * * *
17858276 ACACGTTTACGCTCGTCAGCTTATTTATGCGTTTACGCTCGTCAACTTGCACACATTTACGCTCG
1 ACACGTTTACGCTCGTCAGCTTAATTATGCATTTACGCTCGCCAACTTGCACACATTTACACTCG
* *
17858341 TCAGATTAATTATGCGTTTACGCTCTCCAACTTGCACACATTTACGCTCGTCAGCTTAATTATGC
66 TCAGATTAATTATGCGTTTACGCTCTCCAACTTGCACACATTTACACTCGTCAGCTTAACTATGC
17858406 ATTTACGCTCG
131 ATTTACGCTCG
* *
17858417 ACACGTTTACGCTCGTCAGCTTAATTATGCATTTACGCTCGCCAACTTGCATACGTTTACACTCG
1 ACACGTTTACGCTCGTCAGCTTAATTATGCATTTACGCTCGCCAACTTGCACACATTTACACTCG
* * * * *
17858482 TCAGCTTAATTATGTGTTTATGCTC-CTCAGCTTGCACACGTTTACACTCGTCAGCTTAACTATG
66 TCAGATTAATTATGCGTTTACGCTCTC-CAACTTGCACACATTTACACTCGTCAGCTTAACTATG
*
17858546 CGTTTACGCT
130 CATTTACGCT
17858556 TACGCTCGCC
Statistics
Matches: 124, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
140 1 0.01
141 123 0.99
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.35
Consensus pattern (141 bp):
ACACGTTTACGCTCGTCAGCTTAATTATGCATTTACGCTCGCCAACTTGCACACATTTACACTCG
TCAGATTAATTATGCGTTTACGCTCTCCAACTTGCACACATTTACACTCGTCAGCTTAACTATGC
ATTTACGCTCG
Found at i:17861357 original size:14 final size:15
Alignment explanation
Indices: 17861338--17861372 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
17861328 ATTCTTTTGT
17861338 AAAAGTTAAA-AAAA
1 AAAAGTTAAACAAAA
17861352 AAAAGTTAAACAAAA
1 AAAAGTTAAACAAAA
*
17861367 AGAAGT
1 AAAAGT
17861373 CTGACCTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.71, C:0.03, G:0.11, T:0.14
Consensus pattern (15 bp):
AAAAGTTAAACAAAA
Done.