Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 67 of 135
Found at i:20170670 original size:129 final size:129
Alignment explanation
Indices: 20170479--20170769 Score: 311
Period size: 129 Copynumber: 2.3 Consensus size: 129
20170469 GTTTTCTTAG
* * * * * *
20170479 ATACATCCGGTGATGCACTTACGTGT--TAGTGTGATTGCTTTGATTTATTCGATGATGCACTAT
1 ATACATCCGATGATGCA-TTATGTGTGCTAGTATAATTGCTTTGATTTATCCAATGATGCACTAT
* * * *
20170542 ACGTGCCAATATAATTGT-TTTGGCTTGTCCGATGATGCACTATGAGTGT-CAATATACATTCTT
65 ACATGCCAATATAATT-TCTTCGACTTGTCCGATGATACACTATGAGT-TCCAATATACATTCTT
20170605 CA
128 CA
* * *
20170607 ATACATCCGATGATGCATTATGTGTGCTAGTATAATTGCTTTGGTTTGTCCAATGATGCACTATG
1 ATACATCCGATGATGCATTATGTGTGCTAGTATAATTGCTTTGATTTATCCAATGATGCACTATA
* * * * **
20170672 CATGCCAGTATAATTTCTTCGATTTGTCCGATGATACACTATGAGTTCCAGTATACATTTTTTG
66 CATGCCAATATAATTTCTTCGACTTGTCCGATGATACACTATGAGTTCCAATATACATTCTTCA
* * * * *
20170736 GTACATCTGATGATGCACTATGCGTGCTTGTATA
1 ATACATCCGATGATGCATTATGTGTGCTAGTATA
20170770 TTTCCTTCAG
Statistics
Matches: 135, Mismatches: 24, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
127 7 0.05
128 18 0.13
129 110 0.81
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.38
Consensus pattern (129 bp):
ATACATCCGATGATGCATTATGTGTGCTAGTATAATTGCTTTGATTTATCCAATGATGCACTATA
CATGCCAATATAATTTCTTCGACTTGTCCGATGATACACTATGAGTTCCAATATACATTCTTCA
Found at i:20170723 original size:43 final size:44
Alignment explanation
Indices: 20170528--20170731 Score: 161
Period size: 43 Copynumber: 4.7 Consensus size: 44
20170518 TTGATTTATT
* * **
20170528 CGATGATGCACTAT-ACGTGCCAATATA-ATTGT-TTTGGCTTGTC
1 CGATGATGCACTATGA-GTGCCAGTATACATT-TCTTCGATTTGTC
* * * ***
20170571 CGATGATGCACTATGAGTGTCAATATACA-TTCTTCAATACATC
1 CGATGATGCACTATGAGTGCCAGTATACATTTCTTCGATTTGTC
* * * * * *
20170614 CGATGATGCATTATGTGTGCTAGTATA-ATTGCTTTGGTTTGTC
1 CGATGATGCACTATGAGTGCCAGTATACATTTCTTCGATTTGTC
*
20170657 CAATGATGCACTATGCA-TGCCAGTATA-ATTTCTTCGATTTGTC
1 CGATGATGCACTATG-AGTGCCAGTATACATTTCTTCGATTTGTC
* *
20170700 CGATGATACACTATGAGTTCCAGTATACATTT
1 CGATGATGCACTATGAGTGCCAGTATACATTT
20170732 TTTGGTACAT
Statistics
Matches: 124, Mismatches: 30, Indels: 13
0.74 0.18 0.08
Matches are distributed among these distances:
42 3 0.02
43 115 0.93
44 6 0.05
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (44 bp):
CGATGATGCACTATGAGTGCCAGTATACATTTCTTCGATTTGTC
Found at i:20170736 original size:86 final size:86
Alignment explanation
Indices: 20170528--20170737 Score: 221
Period size: 86 Copynumber: 2.4 Consensus size: 86
20170518 TTGATTTATT
* * * *
20170528 CGATGATGCACTAT-ACGTGCCAATATAATTGTTTTGGCTTGTCCGATGATGCACTATGAGTGTC
1 CGATGATGCACTATGA-GTGCCAGTATAATTGTTTTGGTTTGTCCAATGATGCACTATGAGTGCC
20170592 AATATACATTCTTCAATACATC
65 AATATACATTCTTCAATACATC
* * * *
20170614 CGATGATGCATTATGTGTGCTAGTATAATTGCTTTGGTTTGTCCAATGATGCACTATGCA-TGCC
1 CGATGATGCACTATGAGTGCCAGTATAATTGTTTTGGTTTGTCCAATGATGCACTATG-AGTGCC
* * ***
20170678 AGTATA-ATTTCTTCGATTTGTC
65 AATATACA-TTCTTCAATACATC
* *
20170700 CGATGATACACTATGAGTTCCAGTATACATT-TTTTGGT
1 CGATGATGCACTATGAGTGCCAGTATA-ATTGTTTTGGT
20170738 ACATCTGATG
Statistics
Matches: 101, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
85 1 0.01
86 96 0.95
87 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (86 bp):
CGATGATGCACTATGAGTGCCAGTATAATTGTTTTGGTTTGTCCAATGATGCACTATGAGTGCCA
ATATACATTCTTCAATACATC
Found at i:20172926 original size:83 final size:83
Alignment explanation
Indices: 20172817--20172974 Score: 253
Period size: 83 Copynumber: 1.9 Consensus size: 83
20172807 ACGTAAGTCC
* *
20172817 AGAACATTTATGCTCATCAGCTAATCAGAATCAAAATGATCGTGTCAGGTTATCCTTTCGGATTT
1 AGAACATTTACGCTCATCAGCTAATCAGAATCAAAATGATCGTGTCAGGTTATCCTTTCGAATTT
20172882 AACCAATGACATAAGTAT
66 AACCAATGACATAAGTAT
* * * * *
20172900 AGAACGTTTACGCTCGTTAGCTAATCAGAATCAGAATGATTGTGTCAGGTTATCCTTTCGAATTT
1 AGAACATTTACGCTCATCAGCTAATCAGAATCAAAATGATCGTGTCAGGTTATCCTTTCGAATTT
20172965 AACCAATGAC
66 AACCAATGAC
20172975 CGCTCATATA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
83 68 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (83 bp):
AGAACATTTACGCTCATCAGCTAATCAGAATCAAAATGATCGTGTCAGGTTATCCTTTCGAATTT
AACCAATGACATAAGTAT
Found at i:20177030 original size:19 final size:22
Alignment explanation
Indices: 20176988--20177031 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
20176978 TGTCATAATT
20176988 TAAAAATTATATTAAAAATCAA
1 TAAAAATTATATTAAAAATCAA
*
20177010 TAAAAA-TAT-TTAAATAT-AA
1 TAAAAATTATATTAAAAATCAA
20177029 TAA
1 TAA
20177032 TTTTTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 5 0.24
20 7 0.33
21 3 0.14
22 6 0.29
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (22 bp):
TAAAAATTATATTAAAAATCAA
Found at i:20177969 original size:27 final size:27
Alignment explanation
Indices: 20177917--20177971 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
20177907 TATAACAACC
*
20177917 AACCCATTTGAGAGATATGAGCGGTGA
1 AACCCATTTGAGAGATATAAGCGGTGA
* * *
20177944 AACCCATTTGAGATATCTAAGGGGTGA
1 AACCCATTTGAGAGATATAAGCGGTGA
20177971 A
1 A
20177972 GAAGTTCATC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.24
Consensus pattern (27 bp):
AACCCATTTGAGAGATATAAGCGGTGA
Found at i:20178493 original size:27 final size:28
Alignment explanation
Indices: 20178461--20178519 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
20178451 ACTAGTTGAT
* * *
20178461 GAAAAAAAAATT-AGATACTAATTTAGGA
1 GAAAAAAAACTTAAG-TACCAATTTAGAA
20178489 GAAAAAAAACTTAAGTACCAATTTAGAA
1 GAAAAAAAACTTAAGTACCAATTTAGAA
20178517 GAA
1 GAA
20178520 GTGGATAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 25 0.93
29 2 0.07
ACGTcount: A:0.58, C:0.07, G:0.14, T:0.22
Consensus pattern (28 bp):
GAAAAAAAACTTAAGTACCAATTTAGAA
Found at i:20179598 original size:121 final size:121
Alignment explanation
Indices: 20179464--20179711 Score: 496
Period size: 121 Copynumber: 2.0 Consensus size: 121
20179454 TTGTAAGTAA
20179464 ATATATGCGTATGATATCATGATTGGGTCATTTGTTCATAAATGTTACATATATGCGTGTGTCAT
1 ATATATGCGTATGATATCATGATTGGGTCATTTGTTCATAAATGTTACATATATGCGTGTGTCAT
20179529 GTGCATGTGTGTCTATTAATTAAATGGTGTCTTATGTTCATATGATCGATATATAT
66 GTGCATGTGTGTCTATTAATTAAATGGTGTCTTATGTTCATATGATCGATATATAT
20179585 ATATATGCGTATGATATCATGATTGGGTCATTTGTTCATAAATGTTACATATATGCGTGTGTCAT
1 ATATATGCGTATGATATCATGATTGGGTCATTTGTTCATAAATGTTACATATATGCGTGTGTCAT
20179650 GTGCATGTGTGTCTATTAATTAAATGGTGTCTTATGTTCATATGATCGATATATAT
66 GTGCATGTGTGTCTATTAATTAAATGGTGTCTTATGTTCATATGATCGATATATAT
20179706 ATATAT
1 ATATAT
20179712 ATATATATAT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
121 127 1.00
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (121 bp):
ATATATGCGTATGATATCATGATTGGGTCATTTGTTCATAAATGTTACATATATGCGTGTGTCAT
GTGCATGTGTGTCTATTAATTAAATGGTGTCTTATGTTCATATGATCGATATATAT
Found at i:20182095 original size:25 final size:23
Alignment explanation
Indices: 20182067--20182112 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
20182057 GTTGGATCCA
20182067 AATTAAATTCTAAAAAGATAATTTG
1 AATTAAA-TCTAAAAA-ATAATTTG
*
20182092 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
20182113 CCCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTTG
Found at i:20185647 original size:21 final size:20
Alignment explanation
Indices: 20185623--20185738 Score: 66
Period size: 21 Copynumber: 5.8 Consensus size: 20
20185613 CCATAATAGA
*
20185623 AATAATAATATAAAGCACAAT
1 AATAATAATATAAA-AACAAT
*
20185644 AATAAT-AT-TAAAAATAAT
1 AATAATAATATAAAAACAAT
* *
20185662 AATAATAATACTAATAATAAT
1 AATAATAATA-TAAAAACAAT
*
20185683 GATAATAATA-AATCTAAACAACT
1 AATAATAATATAA---AAACAA-T
20185706 AATAATGAA-ATAAAAGA-AAT
1 AATAAT-AATATAAAA-ACAAT
20185726 AATAA-AATA-AAAA
1 AATAATAATATAAAA
20185739 GAAAAGAAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 25
0.71 0.06 0.23
Matches are distributed among these distances:
18 16 0.21
19 9 0.12
20 8 0.10
21 28 0.36
22 5 0.06
23 7 0.09
24 4 0.05
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (20 bp):
AATAATAATATAAAAACAAT
Found at i:20185662 original size:18 final size:17
Alignment explanation
Indices: 20185623--20185682 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 17
20185613 CCATAATAGA
* *
20185623 AATAATAATATAAAGCAC
1 AATAATAATATAAA-AAT
20185641 AATAATAATATTAAAAAT
1 AATAATAATA-TAAAAAT
**
20185659 AATAATAATAATACTAAT
1 AATAATAAT-ATAAAAAT
20185677 AATAAT
1 AATAAT
20185683 GATAATAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 31 0.86
19 5 0.14
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (17 bp):
AATAATAATATAAAAAT
Found at i:20185711 original size:3 final size:3
Alignment explanation
Indices: 20185641--20185693 Score: 70
Period size: 3 Copynumber: 17.7 Consensus size: 3
20185631 TATAAAGCAC
* * * *
20185641 AAT AAT AAT ATT AAA AAT AAT AAT AAT AAT ACT AAT AAT AAT GAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
20185689 AAT AA
1 AAT AA
20185694 ATCTAAACAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:20185726 original size:17 final size:18
Alignment explanation
Indices: 20185706--20185742 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
20185696 CTAAACAACT
*
20185706 AATAATGAAAT-AAAAGA
1 AATAATAAAATAAAAAGA
20185723 AATAATAAAATAAAAAGA
1 AATAATAAAATAAAAAGA
20185741 AA
1 AA
20185743 AGAAAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (18 bp):
AATAATAAAATAAAAAGA
Found at i:20186016 original size:14 final size:15
Alignment explanation
Indices: 20185999--20186027 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
20185989 AGAGGAGGAG
20185999 GAAAGGTT-GGAGAA
1 GAAAGGTTAGGAGAA
20186013 GAAAGGTTAGGAGAA
1 GAAAGGTTAGGAGAA
20186028 AGGGGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.45, C:0.00, G:0.41, T:0.14
Consensus pattern (15 bp):
GAAAGGTTAGGAGAA
Found at i:20193305 original size:25 final size:23
Alignment explanation
Indices: 20193277--20193322 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
20193267 GTTGGATCCA
20193277 AATTAAATTCTAAAAAGATAATTTG
1 AATTAAA-TCTAAAAA-ATAATTTG
*
20193302 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
20193323 CCCTAATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTTG
Found at i:20200279 original size:24 final size:24
Alignment explanation
Indices: 20200252--20200297 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
20200242 TCTCTTAAAG
*
20200252 AATGACTGTAATTTTATTGTTCAT
1 AATGACTGTAATTTTACTGTTCAT
20200276 AATGACTGTAATTTTACTGTTC
1 AATGACTGTAATTTTACTGTTC
20200298 GTTATTTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.48
Consensus pattern (24 bp):
AATGACTGTAATTTTACTGTTCAT
Found at i:20204092 original size:13 final size:13
Alignment explanation
Indices: 20204074--20204100 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
20204064 GCCATATTAC
20204074 TCGGATGGGAGAG
1 TCGGATGGGAGAG
20204087 TCGGATGGGAGAG
1 TCGGATGGGAGAG
20204100 T
1 T
20204101 TAGGTACAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.52, T:0.19
Consensus pattern (13 bp):
TCGGATGGGAGAG
Found at i:20206182 original size:35 final size:35
Alignment explanation
Indices: 20206136--20206204 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
20206126 TATATGCTTT
20206136 CATATATTGTTTTGTTGATGATCAAAGAAAGCATC
1 CATATATTGTTTTGTTGATGATCAAAGAAAGCATC
*
20206171 CATATATTGTTTTTTTGATGATCAAAGAAAGCAT
1 CATATATTGTTTTGTTGATGATCAAAGAAAGCAT
20206205 GAGTAACTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (35 bp):
CATATATTGTTTTGTTGATGATCAAAGAAAGCATC
Found at i:20212942 original size:13 final size:14
Alignment explanation
Indices: 20212913--20212942 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
20212903 TTCAGAACAT
20212913 TGACATTTAACCTC
1 TGACATTTAACCTC
20212927 TGACATTTAA-CTC
1 TGACATTTAACCTC
20212940 TGA
1 TGA
20212943 TTGCGTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:20218205 original size:216 final size:212
Alignment explanation
Indices: 20217797--20218458 Score: 864
Period size: 216 Copynumber: 3.1 Consensus size: 212
20217787 GCATCATTTC
* * * * * *
20217797 TCTAAATTGTTTGACATTTTGCAAACAAGTTTTGGTCTTTAAAATGAAAACTTATTTACGTGAGA
1 TCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTT-GAATTAAAACTTATTTACGTGAGA
* * * * *
20217862 ATT-TTT-TCTCTTGGTTGTTGGATGAACTTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATA
65 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC-TGTCAAACTTTTACGAGTTCTTTCATA
* * * *
20217925 GTTGGTTCCTTACAA-AATTCAAGACAATCCACTCCTTCGAGCAATTTTTCGAACATTCCATGCT
129 GTTTGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
* *
20217989 CAGGAAATCGCGGCATTTGG
193 CGGGAAATCGCAGCATTTGG
* * *
20218009 TTTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAATACCTATTTACGTGAGA
1 TCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAA-ACTTATTTACGTGAGA
* * * *
20218074 ATTGTTTCTCTTTTGGTTCTTGGACAAACCTCCGAACATGTCAAACTTTTACGAGTTCTTTGATA
65 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC-TGTCAAACTTTTACGAGTTCTTTCATA
*
20218139 GTTTCAGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
129 GTTT--GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
*
20218204 TCGGGAAATCGCATCATTTGG
192 TCGGGAAATCGCAGCATTTGG
* * *
20218225 TCTAAATAGTTTGTCATTTTGTAAA-AAGATTTTGTTGTTTGAATTAAAAACTTATTTATGTGAG
1 TCTAAATAGTTTGTCATTTTGTAAACAA-ATTTTGGTCTTTGAATT-AAAACTTATTTACGTGAG
* *
20218289 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGTCAAACTTTTACGAGTTCTTTCAT
64 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT-GTCAAACTTTTACGAGTTCTTTCAT
* * * *
20218354 AACTTTGCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCTATT
128 -AGTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
*
20218419 CTCGGGAAATAGCAGCATTTGG
191 CTCGGGAAATCGCAGCATTTGG
20218441 TCTAAATAGTTTGTCATT
1 TCTAAATAGTTTGTCATT
20218459 GATACGATCT
Statistics
Matches: 395, Mismatches: 44, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
211 6 0.02
212 53 0.13
213 3 0.01
214 51 0.13
215 6 0.02
216 269 0.68
217 7 0.02
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (212 bp):
TCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAACTTATTTACGTGAGAA
TTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTGTCAAACTTTTACGAGTTCTTTCATAGT
TTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
GAAATCGCAGCATTTGG
Found at i:20219438 original size:32 final size:32
Alignment explanation
Indices: 20219402--20219464 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
20219392 GCCATCCATA
* *
20219402 CATGTACCTGAAATATATTAATCAGCTAATTG
1 CATGTACCTGAAACACATTAATCAGCTAATTG
20219434 CATGTACCTGAAACACATTAATCAGCTAATT
1 CATGTACCTGAAACACATTAATCAGCTAATT
20219465 AATTTCGGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (32 bp):
CATGTACCTGAAACACATTAATCAGCTAATTG
Found at i:20219553 original size:39 final size:39
Alignment explanation
Indices: 20219510--20219608 Score: 180
Period size: 39 Copynumber: 2.5 Consensus size: 39
20219500 TTAATTTGTC
*
20219510 TCAAACTTAGACACATTAAAAATAACTACTAAATATGTA
1 TCAAACTAAGACACATTAAAAATAACTACTAAATATGTA
20219549 TCAAACTAAGACACATTAAAAATAACTACTAAATATGTA
1 TCAAACTAAGACACATTAAAAATAACTACTAAATATGTA
*
20219588 TCAAACAAAGACACATTAAAA
1 TCAAACTAAGACACATTAAAA
20219609 CCCTATTTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.24
Consensus pattern (39 bp):
TCAAACTAAGACACATTAAAAATAACTACTAAATATGTA
Found at i:20220443 original size:264 final size:259
Alignment explanation
Indices: 20219926--20220455 Score: 646
Period size: 263 Copynumber: 2.0 Consensus size: 259
20219916 TAGCTCCAAA
* * *
20219926 GGTTCCTTGAATCAAAAACTTATTTACGTGAGAATTGATTCTCTTGGTTCTTGGACGAACATCCG
1 GGTT-CTTGAATCAAAAACTTAATTACGTGAGAATTGATTCTCTTGATTCTGGGACGAACATCCG
* ** *
20219991 AACTTGTAAAACTTTTACGAGTTCTATTATAACTTCAGTTCCTTACTGTATTTAAGACGATACAT
65 AACTTGTAAAACTTTTACGAGTTCTATTATAACTTCAGTTCCATAAAGTATTCAAGACGATACAT
* * * * * *
20220056 TCCTTCGAGCAACTTTCTAAACACTCTACGCTTGAAAAATCTCATCATTTTTCTAAATTGTTTGT
130 TCCTTCGAGCAACTTTCCAAACACTCCACGCTCGAAAAATCGCATCATTTGTCTAAATAGTTTGT
* * * ** *
20220121 CATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGTTTTGTTTCTCTCTC
195 CATTTTGTAAACAACTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATTGTTTCGCT-T-
20220186 TT
258 TT
* * * * * * *
20220188 GGTTCTTGAATTAAATATTTAATTACGTGAGAATTGTTTCGCTTTTGATTCTGGGACGAACTTTC
1 GGTTCTTGAATCAAAAACTTAATTACGTGAGAATTGATT--CTCTTGATTCTGGGACGAACATCC
* * * * * *
20220253 GAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTTAGTTCCATAAAGTATTCAAGATGATCCA
64 GAACTTGTAAAACTTTTACGAGTTCTATTATAACTTCAGTTCCATAAAGTATTCAAGACGATACA
* * * * **
20220318 TTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT
129 TTCCTTCGAGCAACTTTCCAAACACTCCACGCTCGAAAAATCGCATCATTT-GTCTAAATAGTTT
* *
20220383 GTCATTTTGTAAACAACTTTTGGTCCTTGAATTAAATACTTATTTACATGAGAATTGTTTCGCTT
193 GTCATTTTGTAAACAACTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATTGTTTCGCTT
20220448 TT
258 TT
20220450 GGTTCT
1 GGTTCT
20220456 GGGATGAACT
Statistics
Matches: 225, Mismatches: 40, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
261 30 0.13
262 12 0.05
263 116 0.52
264 67 0.30
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (259 bp):
GGTTCTTGAATCAAAAACTTAATTACGTGAGAATTGATTCTCTTGATTCTGGGACGAACATCCGA
ACTTGTAAAACTTTTACGAGTTCTATTATAACTTCAGTTCCATAAAGTATTCAAGACGATACATT
CCTTCGAGCAACTTTCCAAACACTCCACGCTCGAAAAATCGCATCATTTGTCTAAATAGTTTGTC
ATTTTGTAAACAACTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATTGTTTCGCTTTT
Found at i:20221654 original size:214 final size:215
Alignment explanation
Indices: 20220193--20221897 Score: 1957
Period size: 215 Copynumber: 7.9 Consensus size: 215
20220183 CTCTTGGTTC
* * * * * * * *
20220193 TTGAATTAAATATTTAATTACGTGAGAATTGTTTCGCTTTTGATTCTGGGACGAACTTTCGAACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
** *
20220258 TGTCAAACTTTTACGAGTTCTTTTATAATTTTAGTTCCATAAAGTATTCAAGATGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAATTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCT
* * * *
20220323 TCGAGCAATTTTCCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
130 TCGAGCAATTTTCTGAACATTCCATACTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
* *
20220388 TTTGTAAACAACTTTTGGTCC
195 TTTGTAAACAAGTTTTGGTCT
* * * * * *
20220409 TTGAATTAAATACTTATTTACATGAGAATTGTTTCGCTTTTGGTTCTGGGATGAACTTCCGAACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * *
20220474 TGTCAAACTTTTACGAGTTCTTTTATAATTTCAGTTCCAAAATTATTCAAGACGATCCATTCCTT
66 TGTCAAACTTTTACGAGTTCTTTTATAATTTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTT
* *
20220539 CGAGCAATTTT-TCGAACATTCCATACTCGGGAAATCGCATCATTTGGTCTGAATAGTTTGTCAT
131 CGAGCAATTTTCT-GAACATTCCATACTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
* * *
20220603 TTTGTGAAA-AGGTTTTGTTGT
195 TTTGT-AAACAAGTTTTGGTCT
* * * * ** *
20220624 TTGAATAAAAAACTTATTTACGTTAGAATTGTTTCTCTCTTGGTTCATGGATGAACTTTTGGACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * *
20220689 TGTCAAAATTTTACGAGTTCTTTCATAACTTCGGTTCCTTAATGTATTCAAGACGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAATTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCT
* * * * *
20220754 TCGAGCAATTTTTTGAACATTCTATTCTCGAGAAAT-AGCAGCATTTGGTCTAAATAGTTTGTCA
130 TCGAGCAATTTTCTGAACATTCCATACTCGGGAAATCA-CATCATTTGGTCTAAATAGTTTGTCA
*
20220818 TTTTGGAAACAAGTTTTGGTCT
194 TTTTGTAAACAAGTTTTGGTCT
* * * * * * *
20220840 TTGAATCAAAAACTTATTTACGTGAAAATTG-TT-TCTCATGGTTCTTGGACAAAGTTTCGAAAT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * *
20220903 TGTCAAACTTTTACGAGGTCTTTTATAACTTCGGTTCCTAATAGTATTCAAGACGATACATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAATTTCGGTTCCTAA-AGTATTCAAGACGATCCATTCCT
* * * * *** ** * * *
20220968 TTGAGCAACTTTCTAAAAATGATATACTCGAAAAATCGCATCATTT-TTCTAAATTGTTTGTCAT
130 TCGAGCAATTTTCTGAACATTCCATACTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
* *
20221032 TTTGTGAACAAGTTTTTGTCT
195 TTTGTAAACAAGTTTTGGTCT
* * * * * * *
20221053 TTAAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTTGTTCTAGGATGAACTTCCAAACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * *
20221118 TTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAGGACGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAATTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCT
* * * *
20221183 TTGAGCAATTATT-T-AACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCA
130 TCGAGCAATT-TTCTGAACATTCCATACTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCA
* * *
20221246 TTTTGTAAACAAGTCTTGATTT
194 TTTTGTAAACAAGTTTTGGTCT
* *** * * * ***
20221268 TTAAAACGAAAACGTATTCACGTGAGAATTGTTTCTCT-TT-GCTAAAGGACGAACTTCCGAACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* *
20221331 TTTCAAACTTTTACGAGTTCTTTTATAACTTT--GTTCCTTACAGTATTCAAGACGATCCATTCC
66 TGTCAAACTTTTACGAGTTCTTTTATAA-TTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCC
* ** * * **
20221394 TTCAAGTTATTTTCCGAACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTGTCA
129 TTCGAGCAATTTTCTGAACATTCCATACTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCA
* * *
20221459 TTTTGTCAATAACTTTTGGTCT
194 TTTTGTAAACAAGTTTTGGTCT
* * ** * * *
20221481 TTAAATTATACTCTTAATTACGTGAGAATTGTTTCTCTTTTTGTTCTTGGACGAACTTCCGAACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
*
20221546 TGTCAAACTTTTACGAGTTCTTTTATAATTTCAGTTCC-AAAGTATTCAAGACGATCCATTCCTT
66 TGTCAAACTTTTACGAGTTCTTTTATAATTTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTT
* * * *
20221610 CAAGCAATTTTCTGAACATTCCATACTCGAGAAATCACATCATTTGGTCTGAATAGTTTGACATT
131 CGAGCAATTTTCTGAACATTCCATACTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATT
* *
20221675 TTGTAAA-AAGGTTTTGTTGT
196 TTGTAAACAA-GTTTTGGTCT
* *
20221695 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * *
20221760 AGTCAAACTTTTACGAGTTCTTTCATAACTTT-GGTTCCTAAAAGTATTCAAGACGATCCATTCT
66 TGTCAAACTTTTACGAGTTCTTTTATAA-TTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCC
* * * *
20221824 TTCGAGCAATTTTTTGAACATTCTATTCTCGGGAAAT-AGCAGCATTTGGTCTAAATAGTTTGTC
129 TTCGAGCAATTTTCTGAACATTCCATACTCGGGAAATCA-CATCATTTGGTCTAAATAGTTTGTC
*
20221888 ATTTTATAAA
193 ATTTTGTAAA
20221898 AACTTATTCA
Statistics
Matches: 1269, Mismatches: 195, Indels: 50
0.84 0.13 0.03
Matches are distributed among these distances:
211 2 0.00
212 36 0.03
213 200 0.16
214 327 0.26
215 388 0.31
216 315 0.25
217 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (215 bp):
TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
TGTCAAACTTTTACGAGTTCTTTTATAATTTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTT
CGAGCAATTTTCTGAACATTCCATACTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATT
TTGTAAACAAGTTTTGGTCT
Found at i:20222048 original size:191 final size:192
Alignment explanation
Indices: 20221701--20222080 Score: 462
Period size: 191 Copynumber: 2.0 Consensus size: 192
20221691 TTGTTTGAAT
* * * * * *
20221701 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTCAA
1 TAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATCTCAAAATAGTCAA
* * * *
20221766 ACTTTTACGAGTTCTTTCATAACTTTGGTTCCTAAAAGTATTCAAGACGATCCATTCTTTCGAGC
66 ACTTTTACGAGTTCTTTCATAACTTCGGTTCCTAAAAGTATTCAAGACAATACATTCCTTCGAGC
* * * *
20221831 AATTTTTTGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTA
131 AATTTTCTAAACATTATATGCTCGGGAAATAGCAGCATTT-GTCTAAATAGTTTGTCATTTTA
* * *
20221894 TAAAAACTTATTCACGTGAGAATTGTTTCT-T-TTGGTTCTTTGACGAAAATCT-AAAATTGTTA
1 TAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAATCTCAAAATAGTCA
* * * *
20221956 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACATTATTCAAGACAATACATTCCTTCGA-
65 AACTTTTACGAGTTCTTTCATAACTTCGGTTCCTAAAAGTATTCAAGACAATACATTCCTTCGAG
* * * * * *
20222020 CCATCTTTCTAAATATTATATGCTCGGGAAATCGCATCATTTTTCTAAATTGTTTGTCATT
130 CAAT-TTTCTAAACATTATATGCTCGGGAAATAGCAGCATTTGTCTAAATAGTTTGTCATT
20222081 CTGTAAACAA
Statistics
Matches: 158, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
190 20 0.13
191 104 0.66
192 5 0.03
193 29 0.18
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (192 bp):
TAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATCTCAAAATAGTCAA
ACTTTTACGAGTTCTTTCATAACTTCGGTTCCTAAAAGTATTCAAGACAATACATTCCTTCGAGC
AATTTTCTAAACATTATATGCTCGGGAAATAGCAGCATTTGTCTAAATAGTTTGTCATTTTA
Found at i:20223863 original size:214 final size:215
Alignment explanation
Indices: 20221894--20224017 Score: 2434
Period size: 214 Copynumber: 9.9 Consensus size: 215
20221884 TGTCATTTTA
* * ** ** * *
20221894 TAAAAACTTATTCACGTGAGAATTGTTTCT-T-TTGGTTCTTTGACGAAAATCTAAAATTGTTAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
20221957 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACATTATTCAAGACAATACATTCCTTCGA-C
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * ** * * *
20222021 CATCTTTCTAAATATTATATGCTCGGGAAATCGCATCATTT-TTCTAAATTGTTTGTCATTCTGT
130 AAT-TTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
20222085 AAACAAGTTTTGGTCTTTAAAT
194 AAACAAGTTTTGGTCTTTAAAT
* * * * * *
20222107 TAAAAGCTTATTTACGTGAAAATAGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTTAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* *
20222172 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTTGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * * *
20222237 AATTTT-TGAACATTCCATTCTCAGGAAATTGCATGATTTAGTTTAAATAGTTTTTCATTTCGTA
130 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
20222301 AACAAGTTTTGGTGTTTAAAA
195 AACAAGTTTTGGTCTTTAAAT
** * * * *
20222322 CGAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTGTTGGACGAAGTTTCGAACTTTTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
20222385 ACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTATAGTATTCAAGATGATCCATTCCTCCAAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * *
20222449 AA-TTTCCGAACATTCCATGCCCGGGATATTGCATCATTTGGTCTAAATAGTTTTTCATTTTGTA
130 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
20222513 AACAACTTTTGGTCTTTGAAT
195 AACAAGTTTTGGTCTTTAAAT
* * * * *
20222534 TATATATTTATTTATGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * *
20222599 ACTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAACACGATTCATTCCTTCAAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGAGC
*
20222664 AATTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
130 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
20222729 AA-AAGGTTTTGTTGTTTGAAT
195 AACAA-GTTTTGGTCTTTAAAT
* * * * * *
20222750 TAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTTCTAACTAGTTAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* *
20222815 ACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * *
20222880 AATTTTTTGAACATTCTATTCTCGAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGA
130 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
20222945 AACAAGTTTTGGTCTTTGAAT
195 AACAAGTTTTGGTCTTTAAAT
* * * * * * *
20222966 CAAAAACTTATTTACGTGAAAATTG-TT-TCTCATGGTTCTTGGACAAAGTTTCGAAATTGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20223029 ACTTTTACGAGGTCTTTTATAACTTCGGTTCCTAATAGTATTCAAGACGATACATTCCTTTGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTAA-AGTATTCAAGACGATCCATTCCTTCGAGC
* * * *** * ** * * *
20223094 AACTTTCTAAAAATGATATACTCGAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTG
130 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
20223158 AACAAGTTTTTGTCTTTAAAT
195 AACAAGTTTTGGTCTTTAAAT
* * * * * * *
20223179 TAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTTGTTCTAGGATGAACTTCCAAACTTTTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* *
20223244 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAGGACGATCCATTCCTTTGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * *
20223309 AATTATT-T-AACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGT
130 AATT-TTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
20223372 AAACAAGTCTTGATTTTTAAAA
194 AAACAAGTTTTGGTCTTTAAAT
** * * * *** *
20223394 CGAAAACGTATTCACGTGAGAATTGTTTCTCT-TT-GCTAAAGGACGAACTTCCGAACTTTTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
20223457 ACTTTTACGAGTTCTTTTATAACTT-TGTTCCTTACAGTATTCAAGACGATCCATTCCTTCAAGT
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * *
20223521 TATTTTCCGAACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTC
130 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
20223586 AATAACTTTTGGTCTTTAAAT
195 AACAAGTTTTGGTCTTTAAAT
* ** * * *
20223607 TATACTCTTAATTACGTGAGAATTGTTTCTCTTTTTGTTCTTGGACGAACTTCCGAACTTGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20223672 ACTTTTACGAGTTCTTTTATAATTTCAGTTCC-AAAGTATTCAAGACGATCCATTCCTTCAAGCA
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * *
20223736 ATTTTCTGAACATTCCATACTCGAGAAATCACATCATTTGGTCTGAATAGTTTGACATTTTGTAA
131 ATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
20223801 A-AAGGTTTTGTTGTTTGAAT
196 ACAA-GTTTTGGTCTTTAAAT
* * *
20223821 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20223886 ACTTTTACGAGTTCTTTCATAACTTTGGTTCCTAAAAGTATTCAAGACGATCCATTCTTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * *
20223951 AATTTTTTGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTATA
130 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
20224016 AA
195 AA
20224018 AACTTATTCA
Statistics
Matches: 1616, Mismatches: 270, Indels: 47
0.84 0.14 0.02
Matches are distributed among these distances:
211 5 0.00
212 156 0.10
213 287 0.18
214 411 0.25
215 379 0.23
216 376 0.23
217 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
ATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGTCTTTAAAT
Found at i:20224168 original size:191 final size:192
Alignment explanation
Indices: 20223821--20224200 Score: 462
Period size: 191 Copynumber: 2.0 Consensus size: 192
20223811 TTGTTTGAAT
* * * * * *
20223821 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTCAA
1 TAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATCTCAAAATAGTCAA
* * * *
20223886 ACTTTTACGAGTTCTTTCATAACTTTGGTTCCTAAAAGTATTCAAGACGATCCATTCTTTCGAGC
66 ACTTTTACGAGTTCTTTCATAACTTCGGTTCCTAAAAGTATTCAAGACAATACATTCCTTCGAGC
* * * *
20223951 AATTTTTTGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTA
131 AATTTTCTAAACATTATATGCTCGGGAAATAGCAGCATTT-GTCTAAATAGTTTGTCATTTTA
* * *
20224014 TAAAAACTTATTCACGTGAGAATTGTTTCT-T-TTGGTTCTTTGACGAAAATCT-AAAATTGTTA
1 TAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAATCTCAAAATAGTCA
* * * *
20224076 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACATTATTCAAGACAATACATTCCTTCGA-
65 AACTTTTACGAGTTCTTTCATAACTTCGGTTCCTAAAAGTATTCAAGACAATACATTCCTTCGAG
* * * * * *
20224140 CCATCTTTCTAAATATTATATGCTCGGGAAATCGCATCATTTTTCTAAATTGTTTGTCATT
130 CAAT-TTTCTAAACATTATATGCTCGGGAAATAGCAGCATTTGTCTAAATAGTTTGTCATT
20224201 CTGTAAACAA
Statistics
Matches: 158, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
190 20 0.13
191 104 0.66
192 5 0.03
193 29 0.18
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (192 bp):
TAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATCTCAAAATAGTCAA
ACTTTTACGAGTTCTTTCATAACTTCGGTTCCTAAAAGTATTCAAGACAATACATTCCTTCGAGC
AATTTTCTAAACATTATATGCTCGGGAAATAGCAGCATTTGTCTAAATAGTTTGTCATTTTA
Found at i:20224424 original size:215 final size:216
Alignment explanation
Indices: 20224014--20225209 Score: 1437
Period size: 216 Copynumber: 5.6 Consensus size: 216
20224004 TGTCATTTTA
* * ** * *
20224014 TAAAAACTTATTCACGTGAGAATTGTTTCT-T-TTGGTTCTTTGACGAAAATCTAAAATTGTTAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTTAA
* * * * *
20224077 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACATTATTCAAGACAATACATTCCTTCGA-C
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
* * * ** * * *
20224141 CATCTTTCTAAATATTATATGCTCGGGAAATCGCATCATTT-TTCTAAATTGTTTGTCATTCTGT
131 AAT-TTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
*
20224205 AAACAAGTTTTGGTCTTTAAAT
195 AAACAAGTTTTGGTCTTTGAAT
* * * *
20224227 TAAAAGCTTATTTACGTGAAAATAGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTTAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTTAA
* **
20224292 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTTGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
* * * * * * * *
20224357 AATTTT-TGAACATTCCATTCTCAGGAAATTGCATGATTTAGTTTAAATAGTTTTTCATTTCGTA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
20224421 AACAAGTTTTGGTGTTTAAAA
196 AACAAGTTTTGGTCTTTGAAT
** * * * *
20224442 CGAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTGTTGGACGAAGTTTCGAACTT-TTCA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTT-A
* * *
20224504 AACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTATAGTATTCAAGATGATCCATTCCTCCAAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAG
* * * * *
20224568 CAA-TTTCCGAACATTCCATGCCCGGGATATTGCATCATTTGGTCTAAATAGTTTTTCATTTTGT
130 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
*
20224632 AAACAACTTTTGGTCTTTGAAT
195 AAACAAGTTTTGGTCTTTGAAT
* * * * * * *
20224654 TATATATTTATTTATGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTTAA
* * * * *
20224719 ACTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAACACGATTCATTCCTTCAAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
*
20224784 AATTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
20224849 AA-AAGGTTTTGTTGTTTGAAT
196 AACAA-GTTTTGGTCTTTGAAT
* * * * *
20224870 TAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTTCTAACTAGTTAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTTAA
* * * *
20224935 ACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAATGTATTCAAGACTATCTATTCCTTCAAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
* * * ** * *
20225000 AATTTTCTGAACATTCTATTCTCAGGAAATAACAGCATTTGGTCTAAATAGTTTGTCATTTTGGA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
20225065 AACAAGTTTTAGTCTTTGAAT
196 AACAAGTTTTGGTCTTTGAAT
* * * *
20225086 CAAAAACTTATTTACGTGAGAATT-ATT-TCTCTTGGTTCTTGGACGAACATCTAAACTTGTTAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTTAA
* * * *
20225149 ACTTTTACGAGTTCTTTTATAACTTCGTTTCCTTACAGTATTCAAGACGATACATTTCTTC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
20225210 GACCAACTTT
Statistics
Matches: 834, Mismatches: 136, Indels: 25
0.84 0.14 0.03
Matches are distributed among these distances:
211 3 0.00
212 122 0.15
213 82 0.10
214 164 0.20
215 182 0.22
216 279 0.33
217 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (216 bp):
TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTTAA
ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
AACAAGTTTTGGTCTTTGAAT
Found at i:20225688 original size:50 final size:50
Alignment explanation
Indices: 20225548--20225688 Score: 115
Period size: 50 Copynumber: 2.8 Consensus size: 50
20225538 AATTAACGGA
* * * * *
20225548 TTACTAAATGCATGAC-TTGATTTAATGACGCAAGCTTTAACTAACATGGGAG
1 TTACTTAATGCATGTCATT-ATTT-ATGATGCAAAC-TTAACTAACATGGAAG
** ** * * * *
20225600 TTAGATAATGCATGAT-AGGATTTATGATGGATATTTAACTAACATGTAAG
1 TTACTTAATGCATG-TCATTATTTATGATGCAAACTTAACTAACATGGAAG
20225650 TTACTTAATGCATGTCATTATTTATGATGCAAACTTAAC
1 TTACTTAATGCATGTCATTATTTATGATGCAAACTTAAC
20225689 AGATCATGAG
Statistics
Matches: 66, Mismatches: 20, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
49 1 0.02
50 44 0.67
51 6 0.09
52 15 0.23
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (50 bp):
TTACTTAATGCATGTCATTATTTATGATGCAAACTTAACTAACATGGAAG
Found at i:20225929 original size:17 final size:17
Alignment explanation
Indices: 20225898--20225930 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
20225888 CAAACACTTA
20225898 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
20225915 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
20225931 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:20227356 original size:18 final size:18
Alignment explanation
Indices: 20227320--20227364 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
20227310 TACTCTTTCT
20227320 TTTCTTTCTTCATTCTCGA
1 TTTCTTT-TTCATTCTCGA
20227339 TTTCTTTTTCAATT-TCGA
1 TTTCTTTTTC-ATTCTCGA
*
20227357 TCTCTTTT
1 TTTCTTTT
20227365 CTCACAGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.11, C:0.22, G:0.04, T:0.62
Consensus pattern (18 bp):
TTTCTTTTTCATTCTCGA
Found at i:20228386 original size:17 final size:17
Alignment explanation
Indices: 20228366--20228400 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
20228356 TTTTTAATAG
20228366 TCGATT-TTTTTCTTCTT
1 TCGATTCTTTTT-TTCTT
20228383 TCGATTCTTTTTTTCTT
1 TCGATTCTTTTTTTCTT
20228400 T
1 T
20228401 TTTTTAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.06, C:0.17, G:0.06, T:0.71
Consensus pattern (17 bp):
TCGATTCTTTTTTTCTT
Found at i:20228444 original size:24 final size:25
Alignment explanation
Indices: 20228417--20228483 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 25
20228407 ATTCAAATTT
20228417 TTTTTCTTTTTTTCAAACTTTGA-A
1 TTTTTCTTTTTTTCAAACTTTGATA
* * *
20228441 TTTTT-TTCTTTTTTAATATTTTGATT
1 TTTTTCTT-TTTTTCAA-ACTTTGATA
20228467 TTTTTCTTTTTTTCAAA
1 TTTTTCTTTTTTTCAAA
20228484 TTTTTTCACT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
23 2 0.06
24 12 0.34
25 7 0.20
26 12 0.34
27 2 0.06
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.70
Consensus pattern (25 bp):
TTTTTCTTTTTTTCAAACTTTGATA
Found at i:20229689 original size:51 final size:51
Alignment explanation
Indices: 20229628--20229765 Score: 149
Period size: 50 Copynumber: 2.7 Consensus size: 51
20229618 TGCATGACTT
*
20229628 GATTTAATGATGCAAACTTTAACTGACATGGGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAACTTTAACTGACATGAGAGTTACATAATGCATG-TCAG
* * * *
20229680 GATTTATGATGCATA-TTTAACTAACATGTA-AGTTACTTAATGCATGTCAT
1 GATTTATGATGCAAACTTTAACTGACATG-AGAGTTACATAATGCATGTCAG
* *
20229730 TATTTATGATACAAAC-TTAACTGATCATGAGAGTTA
1 GATTTATGATGCAAACTTTAACTGA-CATGAGAGTTA
20229766 ATGGATGTCA
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
49 1 0.01
50 48 0.67
51 18 0.25
52 5 0.07
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (51 bp):
GATTTATGATGCAAACTTTAACTGACATGAGAGTTACATAATGCATGTCAG
Found at i:20229735 original size:50 final size:51
Alignment explanation
Indices: 20229610--20229751 Score: 139
Period size: 50 Copynumber: 2.8 Consensus size: 51
20229600 AACTAATGGA
* * * *
20229610 TTACTAAATGCATGAC-TTGATTTAATGATGCAAACTTTAACTGACATGGGAG
1 TTACTTAATGCATGTCATT-ATTT-ATGATGCAAACTTTAACTAACATGGAAG
* ** * *
20229662 TTACATAATGCATGAT-AGGATTTATGATGCATA-TTTAACTAACATGTAAG
1 TTACTTAATGCATG-TCATTATTTATGATGCAAACTTTAACTAACATGGAAG
*
20229712 TTACTTAATGCATGTCATTATTTATGATACAAAC-TTAACT
1 TTACTTAATGCATGTCATTATTTATGATGCAAACTTTAACT
20229752 GATCATGAGA
Statistics
Matches: 72, Mismatches: 14, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
49 1 0.01
50 46 0.64
51 9 0.12
52 16 0.22
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.37
Consensus pattern (51 bp):
TTACTTAATGCATGTCATTATTTATGATGCAAACTTTAACTAACATGGAAG
Found at i:20229991 original size:17 final size:17
Alignment explanation
Indices: 20229960--20229992 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
20229950 CAAACACTTA
20229960 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
20229977 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
20229993 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:20231440 original size:217 final size:210
Alignment explanation
Indices: 20230820--20231544 Score: 923
Period size: 217 Copynumber: 3.4 Consensus size: 210
20230810 TGTTTGAATT
* * *
20230820 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTT-AA
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCCGAACT-TTTCAA
*
20230884 ACTTTTATGAGTTCTTTCATAATTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
63 ACTTTTACGAGTTCTTT-ATAATTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * *
20230949 AATTTTCTGAACATTCTATTCTTGAGAAATTGCAGCATTTGGTCTAAATTGTTTTTCATTTTGGA
126 AATTTTCTGAACATTCTATGCTAGAGAAATCGCATCATTT-GTCTAAATTGTTTTTCATTTTGTA
20231014 AACAAGTTTTGGTCTTTAAATC
190 AACAAGTTTTGGTC-TTAAATC
* * * * *
20231036 AAAAACTTATTTACCTGAGAATTGTTTCTCTTGGTCCTTGGATGAACTTTCGAACTTGTCAAACT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACT
* * **
20231101 TTTACGAGTTCTTTTATAATTTCGGTTCCTTACAGTATTCAAGATGATAGATTCCTTCGAGCAAT
66 TTTACGAGTTC-TTTATAATTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * *
20231166 TTTCTAAACATTCTACGCTAGAAAAATCGCATCATTTTTCTAAATTGTTTGTCATTTTGTAAACA
129 TTTCTGAACATTCTATGCTAGAGAAATCGCATCATTTGTCTAAATTGTTTTTCATTTTGTAAACA
*
20231231 AGTTTTGGTCATTAAATT
194 AGTTTTGGTC-TTAAATC
* *
20231249 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTCGGTTCTAGGACGAACTTCCAAACTTTTCA
1 AAAAACTTATTTACGTGAGAATTG-TT-TCTCT-T-GGTTCTTGGACGAACTTCCGAACTTTTCA
* * * *
20231314 AACTTTTATGAGTTCTCTTATAACTTCAGTTCCTTAAAGTATTTAAGACGATCCATTCCTTTGAG
62 AACTTTTACGAGTTCT-TTATAATTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
20231379 CAATTTT-TGAACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGT
125 CAATTTTCTGAACATTCTATGCTAGAGAAATCGCATCATTT-GTCTAAATTGTTTTTCATTTTGT
*
20231443 AAACAAGTTTTGGTCTTGAAAAC
189 AAACAAGTTTTGGTCTT-AAATC
* * * *
20231466 GAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCCGAACTTTTCAAACT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACT
20231531 TTTACGAGTTCTTT
66 TTTACGAGTTCTTT
20231545 TCTCTTGGTT
Statistics
Matches: 442, Mismatches: 57, Indels: 24
0.85 0.11 0.05
Matches are distributed among these distances:
212 2 0.00
213 105 0.24
214 120 0.27
215 16 0.04
216 55 0.12
217 144 0.33
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (210 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACT
TTTACGAGTTCTTTATAATTTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
TCTGAACATTCTATGCTAGAGAAATCGCATCATTTGTCTAAATTGTTTTTCATTTTGTAAACAAG
TTTTGGTCTTAAATC
Found at i:20231560 original size:53 final size:53
Alignment explanation
Indices: 20231490--20231598 Score: 157
Period size: 53 Copynumber: 2.1 Consensus size: 53
20231480 ATGAGAATTG
* *
20231490 TTTCTCTTGGCTGTTGGACGAACTTCCGAACTTTTCAAACTTTTACGA-GTTCT
1 TTTCTCTTGGCTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC-ATGTTCT
* **
20231543 TTTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTACATGTTCT
1 TTTCTCTTGGCTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACATGTTCT
20231596 TTT
1 TTT
20231599 ATAACTTCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
52 1 0.02
53 49 0.98
ACGTcount: A:0.18, C:0.20, G:0.17, T:0.45
Consensus pattern (53 bp):
TTTCTCTTGGCTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACATGTTCT
Found at i:20232786 original size:217 final size:215
Alignment explanation
Indices: 20231545--20237085 Score: 3493
Period size: 213 Copynumber: 25.4 Consensus size: 215
20231535 CGAGTTCTTT
** *
20231545 TCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTAC-ATGTTCTTTTATAACTTCGA
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGG
* * * * * * * * **
20231609 TTCCTTACAGTATTCAAGACGATACATTTCTTTGAGCAACTTTCTAAACA-TCCTATGATAGAAA
65 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCC-ATGCTCGGGA
* *
20231673 AATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAA
128 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAA
* *
20231737 TTTATTTACGTCAGAATTGTTTC
193 CTTATTTACGTGAGAATTGTTTC
* * * * * *
20231760 TCTCTCATTGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTATGAGTTCTTTTATAACCTCA
1 TCTCT--TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * *
20231825 GTTCCTTAAAAGCATTCAAGACAATCCATTCCTTCGAGCAGTTTTCCGAACATTCCATTCTCGGG
64 GTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATGCTCGGG
* * * *
20231890 AAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTATAT
127 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
*
20231954 ATTTATTTACGTGAGAATTGTTTC
192 ACTTATTTACGTGAGAATTGTTTC
* * * * * *
20231978 TCTTTTGGTTCCTGGACGAACTTTCGAACCTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * *
20232043 TCCATAAAGTATTTAAGACGATCCATTCCTTGGAGCAATTTTTCGAACATTCCATGCTCGAGAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAA
* ** * *
20232108 TCGCTTCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTTTTTGTTTGAATTAAAAAC
130 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTAAATTAAAAAC
* * *
20232172 CTATTTACTTGAGAGTTGTTTC
194 TTATTTACGTGAGAATTGTTTC
* * *
20232194 TCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * * * *
20232259 TCCTTAAAGTGTTCGAGACGATCCATTCCTTCGAGCAATTTTCTAAAAATTCTATTCTTGGGAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATGCTCGGGAAA
* * * * * * * *
20232324 TTGCAGCATTTGGTCTAAATTGTTTTTGATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACT
130 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACT
20232389 TATTTACGTGAGAATTGTTTC
195 TATTTACGTGAGAATTGTTTC
* * * * * * *
20232410 TCAC--GGTCCATGGACAAACTTCCGAACTTGTCAAACTTTTAAGAGTTCGTTTATAACTTCGAT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * ** * * * * **
20232473 TCCTTACAGTATTCAAGATGATACATTCCTTCGAGCAACTTCCTAAACATTCTACGCTAGAAAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCGGGAAA
** * *
20232538 TCGCATC-TTTTTTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAATTAAAAACT
130 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACT
20232602 TATTTACGTGAGAATTGTTTC
195 TATTTACGTGAGAATTGTTTC
* * * * * * *
20232623 TCTCTCTCGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTATGAGTTCTCTTATATCCTCG
1 TCTCT-T-GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
** * *
20232688 GTTCCTTAAAGTATTCAAGACTTTCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTCGGGAA
64 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAA
* * ***
20232753 ATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACGAAAAC
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
20232818 TTATTTACGTGAGAATTG-TT-
194 TTATTTACGTGAGAATTGTTTC
* * * * * *
20232838 TCTCTTGGCTGTTGGACAAACTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-AGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * *
20232902 TCCTTATAGTATTCAAGACGATCTATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAA
* * * *
20232967 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAATACT
130 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACT
20233032 TATTTACGTGAGAATTG-TT-
195 TATTTACGTGAGAATTGTTTC
* * * *
20233051 TCTATTGGTTTTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * ** * * * **
20233116 TCCTTATAGTATTCAAGACGATACATTCCTTTGAGCAACTTCCTAAACATTCTATGAT-GTAAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCG-GGAA
* *
20233180 ATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
20233244 TTATTTACGTGAGAATTGTTTC
194 TTATTTACGTGAGAATTGTTTC
* * *
20233266 TCTCTGTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTATGAGTTCTTTTATAACTTCG
1 TCTC--TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * *
20233331 GTTCCTTAAAGTATTCAAGACAATCCATTCTTTTGAGCAATTTTTGAACATTCCTTTCTCGGGAA
64 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAA
* * * * * *
20233396 ATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAATGAA-TTTTAGTCTTTAAATCAAGAA
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAAGTTTTGGTCTTTAAATTAAAAA
20233460 CTTATTTACGTGAGAATTG-TT-
193 CTTATTTACGTGAGAATTGTTTC
* * * * * * *
20233481 TCTATTGGCTGTTGGATGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTGTATAACTT-GGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * *
20233545 TCCTTACAGTATTCAAGACGATCCAATT-TTTCTA--AATTGTTT-----TT-CAT--T-GTGGA
66 TCCTTAAAGTATTCAAGACGATCC-ATTCCTTCGAGCAATT-TTTGAACATTCCATGCTCG-GGA
* * * * ** *
20233598 AA-C-AAGT--TTTGGTCTTTCAATCAAAAACTTATTTACATGATATTTGTTTCACTTAGTTCTT
128 AATCGCA-TCATTTGG----TC--T-AAATAGTT-TGT-C---AT-TTTG-TAAAC-AAGTT-TT
* * * *** * ** * * * *
20233659 GGAC--GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-
176 GGTCTTTAAATTAAAAACTTAT-TTAC-GTGA-GAATTGTTTC
* *
20233699 TATAGCTTCGGTTCCTTACAGTATTCAAGACGATACATTCTTTCGAGCAACTT-TCTAAACATTG
1 TCT--CTT-GGTT-CTT---G-------GACGA-AC-TTC---C--G-AACTTGTC-AAAC-TTT
***** * * ** * * **** ** ** *
20233763 TACGA--TAGAAAATCACATCATATTTC-TAAATTGTTTGTCATTTTG-TAAATATGTTTTG-GT
42 TACGAGTTCTTTTATAACTTC-GGTTCCTTAAA--GTAT-TCAAGACGATCCAT-TCCTTCGAG-
* *** * * * * ** **
20233823 CTTGAAATTAAAAAC-TT--AT-TTACGTGAAAATAGTTTC-TCTCTCTTGGTTCTTGGATGAAC
101 C---AATTTTTGAACATTCCATGCT-CG-GGAAATCG---CATC-AT-TTGG-TC-TAAAT-AGT
* * * *** * * * * *
20233883 TT-CCAAACTTTT-CAAAC-A-TTCCATT-CTCGGGAAA-T-CACA-TCATTTA-GTCTA-AATA
153 TTGTC--A-TTTTGTAAACAAGTT---TTGGTCTTTAAATTAAAAACTTATTTACGT-GAGAATT
20233938 GTTT-
211 GTTTC
* * * ** * ** * * *
20233942 TTTATT--TT-GTAAAC-AAGTTTTTG-TCTT-TAAAAAGAAAACATATTTACGTGAGAATTGTT
1 TCTCTTGGTTCTTGGACGAA-CTTCCGAACTTGT------CAAAC-T-TTTAC--GAG--TTCTT
* ** * ** * * ** * ** *
20234001 TCTCTTGGCTGTTGGACCAACTTCTAAACTTTTCAA-ACTTTTACGAATT-CTTTTA-TAACTTT
53 T-T-ATAACT-TCGGTTC--C-T-TAAAGTATTCAAGAC-GAT-C-CATTCCTTCGAGCAA-TTT
* * *** ** * * * * *
20234063 CTT---CCTTACAAAATTCAAGACGATCAC-TCATTCGAG-C--AAT-TTTTCGAGCATTCCATG
107 -TTGAACATT-CCATGCTCGGGA-AATCGCATCATTTG-GTCTAAATAGTTT-G-TCATT---T-
* * * ***** * * * * **
20234120 CTCGGGAAATCGCA-TCATTTGGTC--T-AAGTAGTTTGTCATTT-TGTAAACAACTT-TTGG
162 -T--GTAAA-C-AAGT--TTTGGTCTTTAAATTAAAAACTTATTTACGT-GAGAA-TTGTTTC
* * *** * * * **** ** *
20234177 TCT-TTGAATTATAT--ATTTATTTACGTGAGAATTGTTTCTCTTTTA--A-TTCTTGGACGAAC
1 TCTCTTG-GTTCT-TGGACGAACTT-C-CGA-ACTTGTCAAACTTTTACGAGTTCTTTTA-TAAC
* ** * * * * * * ** * * ** * **
20234236 TTCCGAACTTGTCAAAATTTTACGAGTTCTTATATAATTTCAGTTCCATAAAGTGTTCAAGACGA
60 TTCGGTTCCT-T-AAAGTATT-CAAG-AC-GAT-CCA-TTC-CTTCGAGCAA-TTTTTGA-AC-A
* * * * ** *
20234301 -TCAATTCCTTCGAGCAATTTTCTGAACATTCTATGCTTGAGAAATCGCATCATTTGGTCTAAAT
114 TTCCA-TGC-TCG-GGAA--ATC-G--CA-TC-AT--TTG-G---T--C-T-AAATAGT-T---T
* * * *
20234365 AGTTTGTCATTTTGTACA-AAGGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
155 -G----TCATTTTGTAAACAA-GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTT
20234429 TC
214 TC
* * * * * * * * *
20234431 TCTTTTAGTTCTAGGACAAACTTTCGAACTAGCCAAACTTTTACGAGTTCTTTCATAACTTCAGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* *
20234496 TCCTTAAAGTATTCGAGACGATCCATTCCTTCGAGCAATTTTCTAAACAATT-C-T--T-GGGAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAAC-ATTCCATGCTCGGGAA
* * * * * * * *
20234556 ATTGCAGCATTTGGTCTAAATTGTTTTTAATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAAC
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
20234621 TTATTTACGTGAGAATTG-TT-
194 TTATTTACGTGAGAATTGTTTC
* * ** * *
20234641 TCTCTTGGTCCTTGGACAAACTAACGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCGAT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * * * * **
20234706 TCCTTACAA-TATTCAAGATGATACATTCCTTCGAGCAACTTTCTAAACATTCTACGCTAGAAAA
66 TCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCGGGAA
* * *
20234770 ATCGCATCATTT-TTC-AAATTGTTTGCCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
20234833 TTATTTACGTGAGAATTGTTTCTC
194 TTATTTACGTGAGAATTG-TT-TC
* * * *
20234857 TCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTATGAGGTT-TTTTATAACTTCGA
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGG
* * * *
20234921 TTCCTTAAAATATTCAAGACGATCCATTCCTTTGACCAATTTTTGAACATTCCATTCTCGGGAAA
65 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAAA
* * * * **
20234986 TCGCATCATTTAGTCTAAATAGTTTTTCAATTTGTAAATAAGTTTTGGTCTTTAAAACAAAAACT
130 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACT
20235051 TATTTACGTGAGAATTG-TT-
195 TATTTACGTGAGAATTGTTTC
*** *
20235070 TCTCTTGGCTT-TTGGACGAACTTTAAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-GG
1 TCTCTTGG-TTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * * ** * *
20235133 TTCCTTATAGTTTTCAAGACGATCTATTCCTTCGAGCAATTTTCCAAACATTCAATGCTAGGGAA
65 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATGCTCGGGAA
* * * *
20235198 ATCGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAATAC
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
20235263 TTATTTACGTGAGAATTG-TT-
194 TTATTTACGTGAGAATTGTTTC
* * * * *
20235283 TCTCTTAGTTCTTGGATGAACTTTCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTTGGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * * * * * **
20235348 TCCTTACAGTACTCAAGACGATACATTCCTTCCAGCAACTTTCTAAACATTCTATGCTAGAAAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCGGGAAA
* * *
20235413 TGGCATCAATTT-G-CTAAATTGTTTGTCATTTTGTGAACAAGTTTTGGTCTTTAAATTAAAAAC
130 TCGCATC-ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
*
20235476 TTATTTACGTGACAATTGTTTC
194 TTATTTACGTGAGAATTGTTTC
* * * * ** *
20235498 TCTCTATTGGTTCTTGGACGAGCTTCCCAAATTTTCAAACTTTTATAAGGTCTTTTATAACTTCG
1 TCTC--TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
** * * * *
20235563 GTTCCTTAAAGTATTGTAGATGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTTGGGAA
64 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAA
** * * **
20235628 ATCGCATCATTCAGTCTAAATAGTTTTTCATTTTGTAAATAAGTTTTGGTCTTTAAAACAAAAAC
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
*
20235693 TTATTCACGTGAGAATTG-TT-
194 TTATTTACGTGAGAATTGTTTC
* * * * * *
20235713 TCTCTTGGCTGTTGGAAGAACTTTCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-GGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* ** *
20235777 TCC-T----TA--C-AGATGATCCATTCCTTCGAGCAATTTTCCAAACATCCCATGCTCGGGAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATGCTCGGGAAA
* * * *
20235834 TCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATTTTTGGTCTTTGAATTAAATACT
130 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACT
20235899 TATTTACGTGAGAATTGTTTC
195 TATTTACGTGAGAATTGTTTC
* * *
20235920 T-T-TTGGTTCTTGGACAAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCTGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * * **
20235983 TCCTTACAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAATATTATATGCTCGGGAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCGGGAAA
* * * * *
20236048 TTGCATCATTT-TTCTAAATTGTATGTCATTTTATAAACAAGTTTTGGTCTTTAAATTAAAAACT
130 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACT
20236112 TATTTACGTGAGAATTGTTTC
195 TATTTACGTGAGAATTGTTTC
* * * * * *
20236133 TGTCTCTTGGTTCTTGGACAAACTTCCAAACTTTTCAAAGTTTTATGAGTTCTTTTATAACTTCA
1 --TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * *
20236198 GTTCCTTAAAGTATTCAAGATGATCCATTTCTTTGAGCAATTTTTGAACATTACATTCTCGGGAA
64 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAA
* * * * *
20236263 ATAGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAATGAAAAC
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
20236328 TTATTTACGTGAGAATTG-TT-
194 TTATTTACGTGAGAATTGTTTC
* * * * * * *
20236348 TCTCTTGGCTGTTAGACGAATTTCCGAACTTTTCAAACTTTTACGATTTCTTTTATAACTT-TGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* ** *
20236412 TCCTTACAA-TATTCAAGACGATCCATTCTTTCGAGCAATTTCCCGAACTTTCCATGCTCGGGAA
66 TCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-TTGAACATTCCATGCTCGGGAA
* * * * * *
20236476 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAGAACTTTTGGTCCTTGAATTAAATAC
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
20236541 TTATTTACGTGAGAATTGTTT-
194 TTATTTACGTGAGAATTGTTTC
* * ** * * * *
20236562 TGCTTTTGGTTCTGGGAAAAACTTCCGAGCTTTTCAAACTTTTACGAGTTCTTTTATAATTTCAG
1 T-CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * * **
20236627 TTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCAAACATTCCATGCTCGAAAA
65 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAA
* * *
20236692 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTTGTTGTTTGAATTAAAAA
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTAAATTAAAAA
*
20236756 CTTATTTACTTGAGAATTGTTTTC
193 CTTATTTACGTGAGAATTG-TTTC
* * * *
20236780 TCTCTTGGTTCTTGGACGAACTTTC-ATTCTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGG
1 TCTCTTGGTTCTTGGACGAACTTCCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * * * * * *
20236844 TTCCTTAAAGTATTCGAGATGATCCATTTCTTCGAGCAAGTTTCTGAACATTCTATTCTTGGGAA
65 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCGGGAA
* * * * * * * *
20236909 ATTGCAGCATTTGGTCTAAATTGTTTTTCATTTTGGAAACAAGTTTTGGCCTTTGAATCAAAAAC
129 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAC
*
20236974 TTATTTACGTGAGAATTATTTC
194 TTATTTACGTGAGAATTGTTTC
* * ** *
20236996 T-T-TAGGTCCTTGGACGAACTTTTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* *
20237059 TCCTTACAA-TATTCAAGATGATACATT
66 TCCTTA-AAGTATTCAAGACGATCCATT
20237086 TGATGTGAGC
Statistics
Matches: 4181, Mismatches: 838, Indels: 615
0.74 0.15 0.11
Matches are distributed among these distances:
200 4 0.00
201 1 0.00
202 3 0.00
203 6 0.00
204 28 0.01
205 139 0.03
206 11 0.00
207 10 0.00
208 3 0.00
209 4 0.00
210 94 0.02
211 13 0.00
212 263 0.06
213 908 0.22
214 384 0.09
215 218 0.05
216 620 0.15
217 887 0.21
218 117 0.03
219 19 0.00
220 3 0.00
221 7 0.00
222 15 0.00
223 13 0.00
224 7 0.00
225 13 0.00
226 11 0.00
227 6 0.00
228 7 0.00
229 11 0.00
230 13 0.00
231 11 0.00
232 11 0.00
233 27 0.01
234 23 0.01
235 9 0.00
236 10 0.00
237 7 0.00
238 7 0.00
239 12 0.00
240 15 0.00
241 18 0.00
242 6 0.00
243 19 0.00
244 1 0.00
245 8 0.00
246 10 0.00
247 8 0.00
248 8 0.00
249 6 0.00
250 8 0.00
251 13 0.00
252 19 0.00
253 16 0.00
254 34 0.01
255 17 0.00
256 5 0.00
257 3 0.00
258 3 0.00
259 1 0.00
260 4 0.00
261 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAAAT
CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTT
ATTTACGTGAGAATTGTTTC
Found at i:20232801 original size:430 final size:428
Alignment explanation
Indices: 20231543--20237085 Score: 4181
Period size: 430 Copynumber: 12.7 Consensus size: 428
20231533 TACGAGTTCT
* **
20231543 TTTCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTAC-ATGTTCTTTTATAACTTC
1 TTTCTCTTGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTC
* * * * * * **
20231607 GATTCCTTACAGTATTCAAGACGATACATTTCTTTGAGCAACTTTCTAAACATCCTATGATAGAA
65 GATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTGAACATTCTATGCTAGGG
* *
20231672 AAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
* * * *
20231736 ATTTATTTACGTCAGAATTGTTTCTCTCTCATTGTTCTTGGACGAACTTCCAAACTTTTCAAACT
195 ACTTATTTACGTGAGAATTGTTT-TCTCT--TGGTTCTTGGAAGAACTTCCAAACTTTTCAAACT
* * * * * *
20231801 TTTATGAGTTCTTTTATAACCTCAGTTCCTTAAAAGCATTCAAGACAATCCATTCCTTCGAGCAG
257 TTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAA
** * *
20231866 TTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTGTAAA
321 TTTT-TAAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAA
* * * *
20231930 CAACTTTTGGTCTTTGAATTATATATTTATTTACGTGAGAATTG
385 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * *
20231974 TTTCTCTTTTGGTTCC-TGGACGAACTTTCGAACCTGTCAAACTTTTACGAGTTCTTTTATAATT
1 TTTCTC--TTGG-TCCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * *
20232038 TC-AGTTCCATAAAGTATTTAAGACGATCCATTCCTTGGAGCAA-TTTTTCGAACATTCCATGCT
63 TCGA-TTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCT-GAACATTCTATGCT
* * * ** * *
20232101 CGAGAAATCGCTTCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTTTTTGTTTGAAT
126 AGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTAAAT
* * * * * * **
20232165 TAAAAACCTATTTACTTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAA
190 TAAAAACTTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAA
* * *
20232230 ACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTGTTCGAGACGATCCATTCCTTCGAGC
254 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * * * *
20232295 AATTTTCTAAAAATTCTATTCTTGGGAAATTGCAGCATTTGGTCTAAATTGTTTTTGATTTTGGA
319 AATTTT-TAAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTA
*
20232360 AACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG
383 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
** * * * *
20232406 TTTCTCACGGTCCATGGACAAACTTCCGAACTTGTCAAACTTTTAAGAGTTCGTTTATAACTTCG
1 TTTCTCTTGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * **
20232471 ATTCCTTACAGTATTCAAGATGATACATTCCTTCGAGCAACTTCCTAAACATTCTACGCTAGAAA
66 ATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTGAACATTCTATGCTAGGGA
** * *
20232536 AATCGCATC-TTTTTTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAATTAAAAA
131 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAA
20232600 CTTATTTACGTGAGAATTGTTTCTCTCTCTCGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTT
196 CTTATTTACGTGAGAATTGTTT-TCTCT-T-GGTTCTTGGAAGAACTTCCAAACTTTTCAAACTT
* * * * ** *
20232665 TTATGAGTTCTCTTATATCCTCGGTTCCTTAAAGTATTCAAGACTTTCCATTCCTTTGAGCAATT
258 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
*
20232730 TTTGAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAA
323 TTTAAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAA
* ***
20232795 GTTTTGGTCTTTAAAACGAAAACTTATTTACGTGAGAATTG
388 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * *
20232836 TTTCTCTTGG-CTGTTGGACAAACTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTA
1 TTTCTCTTGGTC-CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * *
20232900 G-TTCCTTATAGTATTCAAGACGAT-CTATTCCTTCGAGCAA-TTTTTCGAACATTCCATGCTTG
65 GATTCCTTAAAGTATTCAAGACGATAC-ATTCCTTCGAGCAACTTTCT-GAACATTCTATGCTAG
* * *
20232962 GGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
128 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAA
* * * * * *
20233027 ATACTTATTTACGTGAGAATTG-TTTCTATTGGTTTTTGGATGAACTTCCGAACTTGTCAAACTT
193 AAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTT
* * * *
20233091 TTACGAGTTCTTTTATAAATTCGGTTCCTTATAGTATTCAAGACGATACATTCCTTTGAGCAACT
258 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-T
** * ** ** * * *
20233156 TCCTAAACATTCTATGAT-GTAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAAC
322 TTTTAAACATTCCATTCTCG-GGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAAC
*
20233219 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG
386 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * *
20233262 TTTCTCTCTGTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTATGAGTTCTTTTATAAC
1 -TT-TCTC--TTGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * * *
20233327 TTCGGTTCCTTAAAGTATTCAAGACAATCCATTCTTTTGAGCAA-TTTTTGAACATTCCT-TTCT
62 TTCGATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTGAACATT-CTATGCT
* * * * *
20233390 CGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAATGAA-TTTTAGTCTTTAAAT
126 AGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAAGTTTTGGTCTTTAAAT
* * * * * *
20233454 CAAGAACTTATTTACGTGAGAATTG-TTTCTATTGGCTGTTGGATGAACTTCCAAACTTTTCAAA
190 TAAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAA
* * * *
20233518 CTTTTACGAGTTCTTGTATAACTT-GGTTCCTTACAGTATTCAAGACGATCCAATT-TTTCTA--
255 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC-ATTCCTTCGAGC
* * * * * * *
20233579 AATTGTTT-----TT-CATTGT-GGAAACAAGTTTTG-GTC-TTTCAATC-AAAAACTTATTTAC
319 AATT-TTTAAACATTCCATTCTCGG-GA-AA---TCGCATCATTT-AGTCTAAATAGTT-TTT-C
** * * * **
20233634 ATGATATTTGTTTCACTTAGTTCTTGGACGAACTTCCGAACTTGTCAAAC-T-TTTAC--GAG--
375 ---AT-TTTG-TAAAC-AAGTT-TT-G--G-TCTT-TGAA-TT-AAAAACTTATTTACGTGAGAA
*
20233693 TTCT
426 TT-G
* * * * * **
20233697 TTTATAGCTTCGGTTCCTT--ACAGTA-TT-C-AA---GACGATACATTCTTTCGAGCAACTTTC
1 TTTCT--CTT-GG-TCCTTGGAC-GAACTTCCGAACTTGTC-AAAC-TT-TTACGAG-TTCTTT-
* * * * * ** * * * * * * *
20233754 TA-AACATT-G-TACGATAGAAAATCACATCATATTTC--TAAATT-GTTTG-TC-ATTTTGTAA
56 TATAAC-TTCGATTC-CT-TAAAGT-A-TTCA-A-GACGATACATTCCTTCGAGCAACTTTCTGA
* * * *** *** * * ** *
20233811 ATATGT-TTTGGTCTTGAAATTAAAAACTTATTTACGTGAAAATAGTTTCTC-TCTCTTGGTTCT
114 ACAT-TCTATGCTAGGGAAA-T-CGCA-TCATTT-GGTCTAAATAGTTTGTCAT-T-TT-G----
* *** ** * * * *
20233874 TGGATGAACTTCCAAACTTTTCAAACATTCCATTCTCGGGAAATCACATCATTTA-GTCTA-AAT
167 T--A--AA----C-AAGTTTT-GGTC-TTTAAAT-T----AAA-AAC-TTATTTACGT-GAGAAT
* * * * * ***** **
20233937 AG-TTT-T-TT-ATT-TTGTAAACAAGTTTTTGTCTTTAAAAAGAAAACATATTTACGTGAGAAT
213 TGTTTTCTCTTGGTTCTTG-GAAGAACTTCCAAACTTT-----TCAAAC-T-TTTAC--GAG--T
* * ** * ** * * ** * * ** * *
20233997 TGTTTCTCTTGGCTGTTGGACCAACTTCTAAACTTTTCAA-ACTTTTACGAATTCTTTTATAACT
266 TCTTT-T-ATAACT-TCGGTTC--C-T-TAAAGTATTCAAGAC-GAT-C-CATTC-CTTCGAGCA
* * * *
20234061 TTCTTCCTTACAAAATTCAAGACGATCACTCATTCGAGCAATTTTTCGAGCATTCCATGCTCGGG
320 AT-TT--TTA-AACATTC----C-AT---TC--TCG-GGAA---ATC--GCA-T-CA---T----
* * * * *
20234126 AAATCGCATCATTTGGTCTAAGTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTATAT
356 ---T----T-A----GTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA
*
20234191 ATTTATTTACGTGAGAATTG
409 ACTTATTTACGTGAGAATTG
** * * * *
20234211 TTTCTCTTTTAATTCTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTATATAATTT
1 TTTCTC--TTGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * *
20234276 C-AGTTCCATAAAGTGTTCAAGACGAT-CAATTCCTTCGAGCAATTTTCTGAACATTCTATGCTT
64 CGA-TTCCTTAAAGTATTCAAGACGATAC-ATTCCTTCGAGCAACTTTCTGAACATTCTATGCTA
* * * * *
20234339 GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTACAA-AGGTTTTGTTGTTTGAATT
127 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAAGTTTTGGTCTTTAAATT
* * * * * ***
20234403 AAAAACTTATTTACGTGAGAATTGTTTCTCTTTTAGTTCTAGGACA-AACTTTCGAACTAGCCAA
191 AAAAACTTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGA-AGAACTTCCAAACTTTTCAA
* * *
20234467 ACTTTTACGAGTTCTTTCATAACTTCAGTTCCTTAAAGTATTCGAGACGATCCATTCCTTCGAGC
254 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * *
20234532 AATTTTCTAAACA----ATTCTTGGGAAATTGCAGCATTTGGTCTAAATTGTTTTTAATTTTGGA
319 AATTTT-TAAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTA
*
20234593 AACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG
383 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* ** *
20234639 TTTCTCTTGGTCCTTGGACAAACTAACGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCG
1 TTTCTCTTGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * **
20234704 ATTCCTTACAA-TATTCAAGATGATACATTCCTTCGAGCAACTTTCTAAACATTCTACGCTAGAA
66 ATTCCTTA-AAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTGAACATTCTATGCTAGGG
* * *
20234768 AAATCGCATCATTT-TTC-AAATTGTTTGCCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
*
20234831 ACTTATTTACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACT
195 ACTTATTTACGTGAGAATTG-TT-T-TCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACT
* * * * *
20234896 TTTATGAGGTT-TTTTATAACTTCGATTCCTTAAAATATTCAAGACGATCCATTCCTTTGACCAA
257 TTTACGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * *
20234960 TTTTTGAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCAATTTGTAAAT
321 TTTTTAAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAAC
* **
20235025 AAGTTTTGGTCTTTAAAACAAAAACTTATTTACGTGAGAATTG
386 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* *** *
20235068 TTTCTCTTGG-CTTTTGGACGAACTTTAAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-
1 TTTCTCTTGGTC-CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * ** *
20235131 GGTTCCTTATAGTTTTCAAGACGAT-CTATTCCTTCGAGCAATTTTCCAAACATTCAATGCTAGG
65 GATTCCTTAAAGTATTCAAGACGATAC-ATTCCTTCGAGCAACTTTCTGAACATTCTATGCTAGG
* * *
20235195 GAAATCGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAA
* * * * *
20235260 TACTTATTTACGTGAGAATTG-TTTCTCTTAGTTCTTGGATGAACTTTCGAACTTGTT-AAACTT
194 AACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGAAGAACTTCCAAACTT-TTCAAACTT
* * * * *
20235323 TTACGAGTTCTTTTATAACTTTGGTTCCTTACAGTACTCAAGACGATACATTCCTTCCAGCAACT
258 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-T
* * * * ** * * * *
20235388 TTCTAAACATTCTATGCTAGAAAAATGGCATCAATTT-G-CTAAATTGTTTGTCATTTTGTGAAC
322 TTTTAAACATTCCATTCTCGGGAAATCGCATC-ATTTAGTCTAAATAGTTTTTCATTTTGTAAAC
* *
20235451 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGACAATTG
386 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * ** *
20235494 TTTCTCTCTATTGGTTCTTGGACGAGCTTCCCAAATTTTCAAACTTTTATAAGGTCTTTTATAAC
1 -TT-TCTC--TTGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* ** * * * * * * *
20235559 TTCGGTTCCTTAAAGTATTGTAGATGATCCATTCCTTTGAGCAA-TTTTTGAACATTCCATTCTT
62 TTCGATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTGAACATTCTATGCTA
** * * **
20235623 GGGAAATCGCATCATTCAGTCTAAATAGTTTTTCATTTTGTAAATAAGTTTTGGTCTTTAAAACA
127 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTA
* * * *
20235688 AAAACTTATTCACGTGAGAATTG-TTTCTCTTGGCTGTTGGAAGAACTTTCAAACTTTTCAAACT
192 AAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACT
*
20235752 TTTACGAGTTCTTTTATAACTT-GGTTCC-T----TA--C-AGATGATCCATTCCTTCGAGCAAT
257 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * * *
20235808 TTTCCAAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
322 TTT-TAAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAAC
* *
20235873 AATTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTG
386 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * *
20235916 TTTCTTTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCT
1 TTTCTCTTGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-
* * * * *
20235981 G-TTCCTTACAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAATATTATATGCTCGGG
65 GATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTGAACATTCTATGCTAGGG
* * * * *
20236045 AAATTGCATCATTT-TTCTAAATTGTATGTCATTTTATAAACAAGTTTTGGTCTTTAAATTAAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
*
20236109 ACTTATTTACGTGAGAATTGTTTCTGTCTCTTGGTTCTTGGACA-AACTTCCAAACTTTTCAAAG
195 ACTTATTTACGTGAGAATTG-TT-T-TCTCTTGGTTCTTGGA-AGAACTTCCAAACTTTTCAAAC
* * * * *
20236173 TTTTATGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATGATCCATTTCTTTGAGCAA
256 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * *
20236238 TTTTTGAACATTACATTCTCGGGAAATAGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAAC
321 TTTTTAAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAAC
* * *
20236303 AAGTTTTGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTG
386 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * *
20236346 TTTCTCTTGG-CTGTTAGACGAATTTCCGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTT
1 TTTCTCTTGGTC-CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * * *
20236410 G-TTCCTTACAA-TATTCAAGACGATCCATTCTTTCGAGCAA-TTTCCCGAACTTTCCATGCTCG
65 GATTCCTTA-AAGTATTCAAGACGATACATTCCTTCGAGCAACTTT-CTGAACATTCTATGCTAG
* * * * *
20236472 GGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAGAACTTTTGGTCCTTGAATTAA
128 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAA
* * * * * *
20236537 ATACTTATTTACGTGAGAATTGTTTTGCTTTTGGTTCTGGGAAAAACTTCCGAGCTTTTCAAACT
193 AAACTTATTTACGTGAGAATTGTTTT-CTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACT
* * * *
20236602 TTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGTAAT
257 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* ** * *
20236667 TTTTCAAACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-
322 TTTT-AAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAAC
* * *
20236731 AAGGTTTTGTTGTTTGAATTAAAAACTTATTTACTTGAGAATTG
386 AA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * *
20236775 TTTTCTCTCTTGGTTCTTGGACGAACTTTC-ATTCTAGTCAAACTTTTACGAGTTCTTTCATAAC
1 --TT-TCTCTTGGTCCTTGGACGAACTTCCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * * * *
20236839 TTCGGTTCCTTAAAGTATTCGAGATGATCCATTTCTTCGAGCAAGTTTCTGAACATTCTATTCTT
62 TTCGATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTGAACATTCTATGCTA
* * * * * * * *
20236904 GGGAAATTGCAGCATTTGGTCTAAATTGTTTTTCATTTTGGAAACAAGTTTTGGCCTTTGAATCA
127 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTA
* * * *** *
20236969 AAAACTTATTTACGTGAGAATT-ATTTCT-TTAGGTCCTTGGACGAACTTTTGAACTTGTCAAAC
192 AAAACTTATTTACGTGAGAATTGTTTTCTCTT-GGTTCTTGGAAGAACTTCCAAACTTTTCAAAC
* * *
20237032 TTTTACGAGTTCTTTTATAACTTCGATTCCTTACAA-TATTCAAGATGATACATT
256 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCATT
20237086 TGATGTGAGC
Statistics
Matches: 4066, Mismatches: 758, Indels: 576
0.75 0.14 0.11
Matches are distributed among these distances:
418 143 0.04
419 29 0.01
420 11 0.00
421 51 0.01
422 121 0.03
423 11 0.00
424 67 0.02
425 18 0.00
426 495 0.12
427 75 0.02
428 256 0.06
429 459 0.11
430 979 0.24
431 355 0.09
432 187 0.05
433 263 0.06
434 87 0.02
435 13 0.00
436 11 0.00
437 19 0.00
438 9 0.00
439 4 0.00
440 4 0.00
443 1 0.00
444 1 0.00
445 1 0.00
447 4 0.00
449 3 0.00
451 3 0.00
452 4 0.00
453 2 0.00
454 7 0.00
455 2 0.00
456 3 0.00
457 12 0.00
458 2 0.00
459 3 0.00
460 13 0.00
461 7 0.00
462 4 0.00
463 1 0.00
464 5 0.00
466 3 0.00
468 4 0.00
469 5 0.00
470 5 0.00
471 3 0.00
472 8 0.00
473 4 0.00
474 2 0.00
475 13 0.00
476 13 0.00
477 5 0.00
479 8 0.00
480 3 0.00
481 2 0.00
482 6 0.00
483 2 0.00
484 3 0.00
486 5 0.00
487 8 0.00
488 12 0.00
489 7 0.00
490 1 0.00
491 1 0.00
492 2 0.00
493 11 0.00
494 8 0.00
495 2 0.00
496 5 0.00
498 1 0.00
500 3 0.00
501 2 0.00
502 4 0.00
503 1 0.00
504 1 0.00
505 2 0.00
509 4 0.00
510 6 0.00
511 23 0.01
512 21 0.01
513 10 0.00
514 21 0.01
515 27 0.01
516 13 0.00
517 5 0.00
518 5 0.00
519 6 0.00
520 5 0.00
523 1 0.00
524 4 0.00
525 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (428 bp):
TTTCTCTTGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
ATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTGAACATTCTATGCTAGGGA
AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAA
CTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTA
CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
AAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTT
TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
Found at i:20233049 original size:643 final size:641
Alignment explanation
Indices: 20231545--20237085 Score: 4272
Period size: 643 Copynumber: 8.5 Consensus size: 641
20231535 CGAGTTCTTT
** * *
20231545 TCTCTTGGTTCTTGGACGAACTTTGGAACTTGTCAAACTTTTAC-ATGTTCTTTTATAACTTCGA
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGA-GTTCTTTTATAACTTCGG
* * * * * * ** * **
20231609 TTCCTTACAGTATTCAAGACGATACATTTCTTTGAGCAA-CTTTCTAAACA-TCCTATGATAGAA
65 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTGAACATTCC-ATTCTTGGG
* * * *
20231672 AAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
129 AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAATCAAAA
* * * * * *
20231736 ATTTATTTACGTCAGAATTGTTTCTCTCTCATTGTTCTTGGACGAACTTCCAAACTTTTCAAACT
194 ACTTATTTACGTGAGAATTG--T-T-TCTCATGGTCCTTGGACGAACTTCCGAACTTGTCAAACT
* * * * *
20231801 TTTATGAGTTCTTTTATAACCTC-AGTTCCTTAAAAGCATTCAAGACAATCCATTCCTTCGAGCA
255 TTTACGAGTTCTTTTATAACTTCGA-TTCCTT-AAAGTATTCAAGACGATACATTCCTTCGAGCA
* * * *
20231865 GTTTTCCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTGTAA
318 -ATTTCCAAACATTCTATGCT-GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
20231929 ACAACTTTTGGTCTTTGAATTATATATTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCCTGGA
381 ACAACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTT-TC-TTTGGTTCTTGGA
* * * * * * *
20231994 CGAACTTTCGAACCTGTCAAACTTTTACGAGTTCTTTTATAAT-TTCAGTTCCATAAAGTATTTA
444 AGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTAT-ATCTTCGGTTCCTTAAAGTATTCA
* * *
20232058 AGACGATCCATTCCTTGGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCTTCATTTGGTC
508 AGACGATCCATTCCTTCGAGCAATTTTT-AAACATTCCATGCTCGAGAAATCGCATCATTT-GTC
** * * * * *
20232123 TAAATAGTTTGTCATTTTGTAAA-AAGGTTTTTTTGTTTGAATTAAAAACCTATTTACTTGAGAG
571 TAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAA
20232187 TTGTTTC
635 TTGTTTC
* ** *
20232194 TCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * *
20232259 TCCTTAAAGTGTTCGAGACGATCCATTCCTTCGAGCAA-TTTTCTAAAAATTCTATTCTTGGGAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTGAACATTCCATTCTTGGGAA
* * * * * *
20232323 ATTGCAGCATTTGGTCTAAATTGTTTTTGATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAAC
131 ATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAATCAAAAAC
* * * *
20232388 TTATTTACGTGAGAATTGTTTCTCACGGTCCATGGACAAACTTCCGAACTTGTCAAACTTTTAAG
196 TTATTTACGTGAGAATTGTTTCTCATGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * *
20232453 AGTTCGTTTATAACTTCGATTCCTTACAGTATTCAAGATGATACATTCCTTCGAGCAACTTCCTA
261 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAATTTCC-A
* ** ** * *
20232518 AACATTCTACGCTAGAAAAATCGCATC-TTTTTTCTAAATTGTTTGTCATTTTGTAAACAAGTTT
325 AACATTCTATGCT-GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
** *
20232582 TGGTCTTAAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTCGGTTCTTGGAAGAACT
389 TGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTT-TCT-T-T-GGTTCTTGGAAGAACT
* * * * **
20232647 TCCAAACTTTTCAAACTTTTATGAGTTCTCTTATATCCTCGGTTCCTTAAAGTATTCAAGACTTT
450 TCCGAACTTTTCAAACTTTTACGAGTTCTTTTATATCTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * *
20232712 CCATTCCTTTGAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGT
515 CCATTCCTTCGAGCAATTTTTAAACATTCCATGCTCGAGAAATCGCATCATTT-GTCTAAATAGT
* ***
20232777 TTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACGAAAACTTATTTACGTGAGAATTG-TT-
579 TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * *
20232838 TCTCTTGGCTGTTGGACAAACTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-AGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * *
20232902 TCCTTATAGTATTCAAGACGATCTATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTTGGGAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTGAACATTCCATTCTTGGGAA
* * * * * *
20232966 ATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAATAC
131 ATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAATCAAAAAC
** *
20233031 TTATTTACGTGAGAATTGTTTCT-ATTGGTTTTTGGATGAACTTCCGAACTTGTCAAACTTTTAC
196 TTATTTACGTGAGAATTGTTTCTCA-TGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * *
20233095 GAGTTCTTTTATAAATTCGGTTCCTTATAGTATTCAAGACGATACATTCCTTTGAGCAACTTCCT
260 GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAATTTCC-
* ** * * *
20233160 AAACATTCTATGATGTAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTT
324 AAACATTCTATGCTG-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * *
20233224 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTGTTGGTTCTTGGACGAAC
388 TTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTG-TT-T-TCT-TTGGTTCTTGGAAGAAC
* * * *
20233289 TTCCAAACTTTTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAA
449 TTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATATCTTCGGTTCCTTAAAGTATTCAAGACGA
* * * * * *
20233354 TCCATTCTTTTGAGCAATTTTTGAACATTCCTTTCTCGGGAAATCGCATCATTTAGTCTAAATAG
514 TCCATTCCTTCGAGCAATTTTTAAACATTCCATGCTCGAGAAATCGCATCATTT-GTCTAAATAG
* * * * *
20233419 TTTTTCATTTTGTAAATGAA-TTTTAGTCTTTAAATCAAGAACTTATTTACGTGAGAATTG-TT-
578 TTTGTCATTTTGTAAA-CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * * *
20233481 TCTATTGGCTGTTGGATGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTGTATAACTT-GGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * *
20233545 TCCTTACAGTATTCAAGACGATCCAATT-TTTCTA--AATTGTTTTTCATTGTGGAAACAAGTTT
66 TCCTTAAAGTATTCAAGACGATCC-ATTCCTTCGAGCAA---TTTTTC----T-G-AAC-A-TTC
*** ** * ** * * * * * ** *
20233607 TGGTCTT--TCAATC-AAAAACTT-ATTTACATGATATTTGTTTCACTTAGTTCTTGGACGAACT
119 CATTCTTGGGAAATCGCATCATTTGGTCTA-A--ATAGTT-TTTCA-TT--TT-GTAAAC-AAGT
** ** ** ** * * * * * ** * *
20233668 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTA--T-AG-CTTCGGTTCCTTACAGT-ATTCAAG
175 TTTGGTCTT-T-AAA--TCAAAAACTT-ATTTACGTGAGAATT--GTTTCTCATGGTCCTT--GG
* ***** * * * *
20233728 ACGATACATTCTTTCGAGCAACTT-TCTAAACATTGTACGA--TAGAAAATCACATCATATTTC-
231 ACGA-AC-TTC---C--G-AACTTGTC-AAAC-TTTTACGAGTTCTTTTATAACTTC-GATTCCT
* **** * ** * * ** *
20233789 TAAATTGTTTGTCATTTTG-TAAATATGTTTTG-GTCTTGAAATTAAAAACTTATT-TACG-T-G
285 TAAA--GTAT-TCAAGACGATACAT-TCCTTCGAG-C---AATTTCCAAAC--ATTCTATGCTGG
* * * ** ** * * ****
20233849 AAAATAGTTTC-TCTCTCTTGGTTCTTGGATGAACTT-CCAAACTTTT-CAAAC-A-TTCCATTC
340 GAAATCG---CATC-AT-TTGG-TC-TAAAT-AGTTTGTC--A-TTTTGTAAACAACTTTTGGTC
* ** * * * * * * * **
20233909 -TCG--GGAAATCACATCATTTA-GTCTA-AATAG-TTT-TTT-ATT-TTGTAAACAAGTTTTTG
394 TTTGAATTAAAT-AC-TTATTTACGT-GAGAATTGTTTTCTTTGGTTCTTG-GAAGAA-CTTCCG
* ** * * * **
20233965 -TCTTTAAAAAGAAAACATATTTACGTGAGAATTGTTTCTCT-TGGCTGTTGGACCAACTTCTAA
454 AACTTT-----TCAAAC-T-TTTAC--GAG--TTCTTT-TATAT--CT-TCGGTTC--C-T-TAA
* * * * * * ** * *
20234028 ACTTTTCAAACTTTTACGAATTCTTTTATAACTTTCTTCCTTA-CAAAATTCAAGACGATCACTC
500 AGTATTC-AA----GACG-A-TC------CA-TTCCTT-C-GAGCAATTTTTAA-AC-AT-TC-C
* * * *
20234092 ATTCGAGCAATTTTTCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAGTAGTTTGTC
545 A-T---GC------TCGAG-A----A--ATC--G-CAT--CAT--TTG--TCTAAATAGTTTGTC
* * * * *
20234157 ATTTTGTAAACAACTTTTGGTCTTTGAATTATATATTTATTTACGTGAGAATTGTTTC
584 ATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTC
* ** * * * * *
20234215 TCTTTTAATTCTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTATATAATTTCAGT
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * * *
20234280 TCCATAAAGTGTTCAAGACGATCAATTCCTTCGAGCAA-TTTTCTGAACATTCTATGCTTGAGAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTGAACATTCCATTCTTGGGAA
* * * * * *
20234344 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTACAA-AGGTTTTGTTGTTTGAATTAAAAA
131 ATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTA-AACAAGTTTTGGTCTTTAAATCAAAAA
* * * * * * * *
20234408 CTTATTTACGTGAGAATTGTTTCTCTTTTAGTTCTAGGACAAACTTTCGAACTAGCCAAACTTTT
195 CTTATTTACGTGAGAATTGTTTCTC--ATGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTT
* * *
20234473 ACGAGTTCTTTCATAACTTC-AGTTCCTTAAAGTATTCGAGACGATCCATTCCTTCGAGCAATTT
258 ACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAA-TT
* * * * * * *
20234537 TCTAAACAATTC--T--TGGGAAATTGCAGCATTTGGTCTAAATTGTTTTTAATTTTGGAAACAA
321 TCCAAAC-ATTCTATGCTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * *
20234598 GTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG-TTTCTCTTGGTCCTTGGACA-AA
385 CTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTTCT-TTGGTTCTTGGA-AGAA
** * *
20234661 CTAACGAACTTGTCAAACTTTTACGAGTTCTTTTATAAT-TTCGATTCCTTACAA-TATTCAAGA
448 CTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTAT-ATCTTCGGTTCCTTA-AAGTATTCAAGA
* * * * * * * *
20234724 TGATACATTCCTTCGAGCAACTTTCTAAACATTCTACGCTAGAAAAATCGCATCATTTTTC-AAA
511 CGATCCATTCCTTCGAGCAA-TTTTTAAACATTCCATGCTCGAGAAATCGCATCATTTGTCTAAA
* *
20234788 TTGTTTGCCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTT
575 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG-T
20234853 TCTC
639 T-TC
* * *
20234857 TCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTATGAGGTT-TTTTATAACTTCGA
1 TCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGA-GTTCTTTTATAACTTCGG
* * * *
20234921 TTCCTTAAAATATTCAAGACGATCCATTCCTTTGACCAA-TTTT-TGAACATTCCATTCTCGGGA
65 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTGAACATTCCATTCTTGGGA
* * * *
20234984 AATCGCATCATTTAGTCTAAATAGTTTTTCAATTTGTAAATAAGTTTTGGTCTTTAAAACAAAAA
130 AATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAATCAAAAA
* * *** *
20235049 CTTATTTACGTGAGAATTGTTTCTCTTGG-CTTTTGGACGAACTTTAAAACTTTTCAAACTTTTA
195 CTTATTTACGTGAGAATTGTTTCTCATGGTC-CTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * *
20235113 CGAGTTCTTTTATAACTT-GGTTCCTTATAGTTTTCAAGACGAT-CTATTCCTTCGAGCAATTTT
259 CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATAC-ATTCCTTCGAGCAA-TTT
* *
20235176 CCAAACATTCAATGCTAGGGAAATCGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAC
322 CCAAACATTCTATGCT-GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* *
20235241 TTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTG-TTTCTCTTAGTTCTTGGATGAACT
386 TTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTTCT-TTGGTTCTTGGAAGAACT
* * * * *
20235305 TTCGAACTTGTT-AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTACAGTACTCAAGACGA
450 TCCGAACTT-TTCAAACTTTTACGAGTTCTTTTATATCTTCGGTTCCTTAAAGTATTCAAGACGA
* * * * * * * *
20235369 TACATTCCTTCCAGCAACTTTCTAAACATTCTATGCTAGAAAAATGGCATCAATTTG-CTAAATT
514 TCCATTCCTTCGAGCAA-TTTTTAAACATTCCATGCTCGAGAAATCGCATC-ATTTGTCTAAATA
* *
20235433 GTTTGTCATTTTGTGAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGACAATTGTTTC
577 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * ** *
20235498 TCTCTATTGGTTCTTGGACGAGCTTCCCAAATTTTCAAACTTTTATAAGGTCTTTTATAACTTCG
1 TCTC--TTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCG
** * *
20235563 GTTCCTTAAAGTATTGTAGATGATCCATTCCTTTGAGCAA-TTTT-TGAACATTCCATTCTTGGG
64 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTGAACATTCCATTCTTGGG
** * *
20235626 AAATCGCATCATTCAGTCTAAATAGTTTTTCATTTTGTAAATAAGTTTTGGTCTTTAAAACAAAA
129 AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAATCAAAA
* * * * * * *
20235691 ACTTATTCACGTGAGAATTGTTTCTCTTGG-CTGTTGGAAGAACTTTCAAACTTTTCAAACTTTT
194 ACTTATTTACGTGAGAATTGTTTCTCATGGTC-CTTGGACGAACTTCCGAACTTGTCAAACTTTT
* * *
20235755 ACGAGTTCTTTTATAACTT-GGTTCC-T----TA--C-AGATGATCCATTCCTTCGAGCAATTTT
258 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAA-TTT
* * * *
20235811 CCAAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAT
322 CCAAACATTCTATGCT-GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
20235876 TTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTG-TTTCTTTTGGTTCTTGGACA-AAC
386 TTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTTC-TTTGGTTCTTGGA-AGAAC
* * * * *
20235939 TTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCTGTTCCTTACAGTATTCAAGACGA
449 TTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATATCTTCGGTTCCTTAAAGTATTCAAGACGA
* * * ** * * * *
20236004 TACATTCCTTCGAGCAACTTTCTAAATATTATATGCTCGGGAAATTGCATCATTTTTCTAAATTG
514 TCCATTCCTTCGAGCAA-TTTTTAAACATTCCATGCTCGAGAAATCGCATCATTTGTCTAAATAG
* *
20236069 TATGTCATTTTATAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTC
578 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * *
20236133 TGTCTCTTGGTTCTTGGACAAACTTCCAAACTTTTCAAAGTTTTATGAGTTCTTTTATAACTTCA
1 --TCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * *
20236198 GTTCCTTAAAGTATTCAAGATGATCCATTTCTTTGAGCAA-TTTT-TGAACATTACATTCTCGGG
64 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTGAACATTCCATTCTTGGG
* * *
20236261 AAATAGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAT-GAA
129 AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTT-AAATCAAA
* * * * *
20236325 AACTTATTTACGTGAGAATTGTTTCTCTTGG-CTGTTAGACGAATTTCCGAACTTTTCAAACTTT
193 AACTTATTTACGTGAGAATTGTTTCTCATGGTC-CTTGGACGAACTTCCGAACTTGTCAAACTTT
* * * *
20236389 TACGATTTCTTTTATAACTTTG-TTCCTTACAA-TATTCAAGACGATCCATTCTTTCGAGCAATT
257 TACGAGTTCTTTTATAACTTCGATTCCTTA-AAGTATTCAAGACGATACATTCCTTCGAGCAATT
* * * * *
20236452 TCCCGAACTTTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAGA
321 T-CCAAACATTCTATGCT-GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * *
20236517 ACTTTTGGTCCTTGAATTAAATACTTATTTACGTGAGAATTGTTTTGCTTTTGGTTCTGGGAAAA
384 ACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTT-C-TTTGGTTCTTGGAAGA
* * *
20236582 ACTTCCGAGCTTTTCAAACTTTTACGAGTTCTTTTATAAT-TTCAGTTCCATAAAGTATTCAAGA
447 ACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTAT-ATCTTCGGTTCCTTAAAGTATTCAAGA
* *
20236646 CGATCCATTCCTTCGAGTAATTTTTCAAACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAA
511 CGATCCATTCCTTCGAGCAATTTTT-AAACATTCCATGCTCGAGAAATCGCATCATTT-GTCTAA
* * * *
20236711 ATAGTTTGTCATTTTGTAAA-AAGGTTTTGTTGTTTGAATTAAAAACTTATTTACTTGAGAATTG
574 ATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG
20236775 TTTTC
638 -TTTC
* * ** *
20236780 TCTCTTGGTTCTTGGACGAACTTTC-ATTCTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGG
1 TCTCTTGGTTCTTGGACGAACTTCCGA-ACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * * * *
20236844 TTCCTTAAAGTATTCGAGATGATCCATTTCTTCGAGCAA-GTTTCTGAACATTCTATTCTTGGGA
65 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTGAACATTCCATTCTTGGGA
* * * * * *
20236908 AATTGCAGCATTTGGTCTAAATTGTTTTTCATTTTGGAAACAAGTTTTGGCCTTTGAATCAAAAA
130 AATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAATCAAAAA
* * **
20236973 CTTATTTACGTGAGAATTATTTCT-TTAGGTCCTTGGACGAACTTTTGAACTTGTCAAACTTTTA
195 CTTATTTACGTGAGAATTGTTTCTCAT-GGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
*
20237037 CGAGTTCTTTTATAACTTCGATTCCTTACAA-TATTCAAGATGATACATT
259 CGAGTTCTTTTATAACTTCGATTCCTTA-AAGTATTCAAGACGATACATT
20237086 TGATGTGAGC
Statistics
Matches: 3982, Mismatches: 654, Indels: 514
0.77 0.13 0.10
Matches are distributed among these distances:
634 5 0.00
635 555 0.14
636 8 0.00
637 9 0.00
638 44 0.01
639 46 0.01
640 62 0.02
641 109 0.03
642 295 0.07
643 1035 0.26
644 109 0.03
645 326 0.08
646 346 0.09
647 121 0.03
648 2 0.00
649 119 0.03
650 73 0.02
651 7 0.00
652 7 0.00
653 9 0.00
654 2 0.00
656 3 0.00
657 6 0.00
658 9 0.00
659 3 0.00
660 6 0.00
661 8 0.00
662 11 0.00
663 8 0.00
664 3 0.00
667 2 0.00
668 1 0.00
669 18 0.00
670 27 0.01
671 27 0.01
672 18 0.00
673 1 0.00
674 8 0.00
675 14 0.00
676 9 0.00
677 12 0.00
678 11 0.00
679 12 0.00
680 5 0.00
681 10 0.00
682 6 0.00
683 2 0.00
684 6 0.00
685 6 0.00
686 4 0.00
687 2 0.00
688 8 0.00
689 5 0.00
690 1 0.00
691 2 0.00
692 5 0.00
693 3 0.00
694 4 0.00
695 6 0.00
696 10 0.00
697 4 0.00
698 11 0.00
699 11 0.00
700 15 0.00
701 7 0.00
702 9 0.00
703 14 0.00
704 13 0.00
705 7 0.00
706 7 0.00
707 1 0.00
708 9 0.00
709 15 0.00
710 11 0.00
711 14 0.00
713 1 0.00
715 4 0.00
716 8 0.00
717 12 0.00
718 9 0.00
719 6 0.00
720 7 0.00
721 1 0.00
722 4 0.00
724 4 0.00
725 10 0.00
726 7 0.00
727 9 0.00
728 6 0.00
729 7 0.00
731 4 0.00
732 56 0.01
733 7 0.00
734 53 0.01
735 26 0.01
737 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (641 bp):
TCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTGAACATTCCATTCTTGGGAA
ATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAATCAAAAAC
TTATTTACGTGAGAATTGTTTCTCATGGTCCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAATTTCCAA
ACATTCTATGCTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
GTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTTCTTTGGTTCTTGGAAGAACTTCCGAA
CTTTTCAAACTTTTACGAGTTCTTTTATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
CTTCGAGCAATTTTTAAACATTCCATGCTCGAGAAATCGCATCATTTGTCTAAATAGTTTGTCAT
TTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTC
Found at i:20233684 original size:165 final size:166
Alignment explanation
Indices: 20233410--20233732 Score: 445
Period size: 165 Copynumber: 2.0 Consensus size: 166
20233400 CATCATTTAG
* * * * *
20233410 TCTAAATAGTTTTTCATTTTGTAAATGAATTTTAGTCTTTAAATCAAGAACTTATTTACGTGAGA
1 TCTAAATAGTTTTTCATTGTGGAAATCAATTTTAGTCTTTAAATCAAAAACTTATTTACATGAGA
* * * *
20233475 ATTGTTTCTATTGGCTGTTGGATGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTGTATAAC
66 ATTGTTTCTATTAGCTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTGTATAAC
20233540 TT-GGTTCCTTACAGTATTCAAGACGATCCAATTTT
131 TTCGGTTCCTTACAGTATTCAAGACGATCCAATTTT
* * * *
20233575 TCTAAATTGTTTTTCATTGTGGAAA-CAAGTTTTGGTCTTTCAATCAAAAACTTATTTACATGAT
1 TCTAAATAGTTTTTCATTGTGGAAATCAA-TTTTAGTCTTTAAATCAAAAACTTATTTACATGAG
* * * *
20233639 ATTTGTTTC-ACTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
65 AATTGTTTCTA-TTAGCTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTGTATA
*
20233703 GCTTCGGTTCCTTACAGTATTCAAGACGAT
129 ACTTCGGTTCCTTACAGTATTCAAGACGAT
20233733 ACATTCTTTC
Statistics
Matches: 137, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
164 3 0.02
165 109 0.80
166 25 0.18
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (166 bp):
TCTAAATAGTTTTTCATTGTGGAAATCAATTTTAGTCTTTAAATCAAAAACTTATTTACATGAGA
ATTGTTTCTATTAGCTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTGTATAAC
TTCGGTTCCTTACAGTATTCAAGACGATCCAATTTT
Found at i:20235919 original size:635 final size:637
Alignment explanation
Indices: 20233891--20237064 Score: 3892
Period size: 635 Copynumber: 5.0 Consensus size: 637
20233881 ACTTCCAAAC
* * * * *
20233891 TTTT-CAAACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTTATTTTGTAAA
1 TTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * ** * * * * *
20233955 CAAGTTTTTGTCTTT-AAAAAGAAAACATATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACC
66 CAACTTTTGGTCTTTGAATTA-AATACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACA
** * * **
20234019 AACTTCTAAACTT-TTCAAACTTTTACGAATTCTTTTATAACTTTCTTCCTTACAAAATTCAAGA
130 AACTTCCGAACTTGTT-AAACTTTTACGAGTTCTTTTATAACTTTGTTCCTTACAGTATTCAAGA
* * * * * * **
20234083 CGAT-CACTCATTCGAGCAA-TTTTTCGAGCATTCCATGCTCGGGAAATCGCATC-ATTTGGTCT
194 CGATACATTCCTTCGAGCAACTTTCT-AAACATTCTATGCTCGAAAAATCGCATCAATTT-G-CT
* * * * * * *
20234145 AAGTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTATATATTTATTTACGTGAGAATT
256 AAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATT
** * * * * *
20234210 GTTTCTCT-T-TTAATTCTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTATATAA
321 GTTTCTCTCTCTTGGTTCTTGGACGAACTTCC-AAATTTTCAAACTTTTATGAGTTCTTTTATAA
* * * * * * * * *
20234273 TTTCAGTTCCATAAAGTGTTCAAGACGATCAATTCCTTCGAGCAATTTTCTGAACATTCTATGCT
385 CTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTT-TGAACATTCCATTCT
* * * * * * * *
20234338 TGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTACAA-AGGTTTTGTTGTTTGAAT
449 TGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTA-AACAAGTTTTGGTCTTTAAAA
* * * * * ***
20234402 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTAGTTCTAGGACAAACTTTCGAACTAGCCAA
513 CAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGCTCTTGGACGAACTTTCGAACTTTTCAA
* * *
20234467 ACTTTTACGAGTTCTTTCATAACTTCAGTTCCTTAAAGTATTCGAGACGATCCATTCCTTCGAGC
576 ACTTTTACGAGTTCTTTTATAACTT-GGTTCCTT--A-TA-TCAAGACGATCCATTCCTTCGAGC
20234532 AA
636 AA
* * * * * * *
20234534 TTTTCTAAACAATT-C-T--T-GGGAAATTGCAGCATTTGGTCTAAATTGTTTTTAATTTTGGAA
1 TTTTCCAAAC-ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * *
20234594 ACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTCCTTGGACA
65 ACAACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACA
** * *
20234659 AACTAACGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-TTTCGATTCCTTACAATATTCAAG
130 AACTTCCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTT-G-TTCCTTACAGTATTCAAG
* * * * *
20234723 ATGATACATTCCTTCGAGCAACTTTCTAAACATTCTACGCTAGAAAAATCGCATCATTTTTC-AA
193 ACGATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAAAAATCGCATCAATTTGCTAA
*
20234787 ATTGTTTGCCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGT
258 ATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGT
20234852 TTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTATGAGGTT-TTTTATAAC
323 TTCTCTCTCTTGGTTCTTGGACGAACTTCCAAA-TTTTCAAACTTTTATGA-GTTCTTTTATAAC
* * * * *
20234916 TTCGATTCCTTAAAATATTCAAGACGATCCATTCCTTTGACCAATTTTTGAACATTCCATTCTCG
386 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTTG
* *
20234981 GGAAATCGCATCATTTAGTCTAAATAGTTTTTCAATTTGTAAATAAGTTTTGGTCTTTAAAACAA
451 GGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAA
* **
20235046 AAACTTATTTACGTGAGAATTGTTTCTCTTGGCTTTTGGACGAACTTTAAAACTTTTCAAACTTT
516 AAACTTATTTACGTGAGAATTGTTTCTCTTGGCTCTTGGACGAACTTTCGAACTTTTCAAACTTT
*
20235111 TACGAGTTCTTTTATAACTTGGTTCCTTATAGTTTTCAAGACGATCTATTCCTTCGAGCAA
581 TACGAGTTCTTTTATAACTTGGTTCCTTATA----TCAAGACGATCCATTCCTTCGAGCAA
* * *
20235172 TTTTCCAAACATTCAATGCTAGGGAAATCGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAA
1 TTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* **
20235237 CAACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTAGTTCTTGGATGA
66 CAACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACAA
* *
20235302 ACTTTCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTACAGTACTCAAGAC
131 ACTTCCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTT-GTTCCTTACAGTATTCAAGAC
* * *
20235367 GATACATTCCTTCCAGCAACTTTCTAAACATTCTATGCTAGAAAAATGGCATCAATTTGCTAAAT
195 GATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAAAAATCGCATCAATTTGCTAAAT
* *
20235432 TGTTTGTCATTTTGTGAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGACAATTGTTT
260 TGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * *
20235497 CTCTCTATTGGTTCTTGGACGAGCTTCCCAAATTTTCAAACTTTTATAAGGTCTTTTATAACTTC
325 CTCTCTCTTGGTTCTTGGACGAACTT-CCAAATTTTCAAACTTTTATGAGTTCTTTTATAACTTC
**
20235562 GGTTCCTTAAAGTATTGTAGATGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTTGGGA
389 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTTGGGA
* *
20235627 AATCGCATCATTCAGTCTAAATAGTTTTTCATTTTGTAAATAAGTTTTGGTCTTTAAAACAAAAA
454 AATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAA
* * * *
20235692 CTTATTCACGTGAGAATTGTTTCTCTTGGCTGTTGGAAGAACTTTCAAACTTTTCAAACTTTTAC
519 CTTATTTACGTGAGAATTGTTTCTCTTGGCTCTTGGACGAACTTTCGAACTTTTCAAACTTTTAC
*
20235757 GAGTTCTTTTATAACTTGGTTCC-T-TA-C-AGATGATCCATTCCTTCGAGCAA
584 GAGTTCTTTTATAACTTGGTTCCTTATATCAAGACGATCCATTCCTTCGAGCAA
* *
20235807 TTTTCCAAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
1 TTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
20235872 CAATTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACAA
66 CAACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACAA
* *
20235937 ACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCTGTTCCTTACAGTATTCAAGAC
131 ACTTCCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTT-TGTTCCTTACAGTATTCAAGAC
* * ** * * *
20236002 GATACATTCCTTCGAGCAACTTTCTAAATATTATATGCTCGGGAAATTGCATCATTTTTCTAAAT
195 GATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAAAAATCGCATCAATTTGCTAAAT
* *
20236067 TGTATGTCATTTTATAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTT
260 TGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTT
* * *
20236132 CTGTCTCTTGGTTCTTGGACAAACTTCCAAACTTTTCAAAGTTTTATGAGTTCTTTTATAACTTC
325 CTCTCTCTTGGTTCTTGGACGAACTTCCAAA-TTTTCAAACTTTTATGAGTTCTTTTATAACTTC
* * * *
20236197 AGTTCCTTAAAGTATTCAAGATGATCCATTTCTTTGAGCAATTTTTGAACATTACATTCTCGGGA
389 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTTGGGA
* **
20236262 AATAGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAATGAAAA
454 AATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAA
* *
20236327 CTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTAGACGAA-TTTCCGAACTTTTCAAACTTTTA
519 CTTATTTACGTGAGAATTGTTTCTCTTGGCTCTTGGACGAACTTT-CGAACTTTTCAAACTTTTA
* * *
20236391 CGATTTCTTTTATAACTTTGTTCCTTACAATATTCAAGACGATCCATTCTTTCGAGCAA
583 CGAGTTCTTTTATAACTTGGTTCCTT---ATA-TCAAGACGATCCATTCCTTCGAGCAA
* * * *
20236450 TTTCCCGAACTTTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
1 TTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * *
20236515 GAACTTTTGGTCCTTGAATTAAATACTTATTTACGTGAGAATTGTTTTGCTTTTGGTTCTGGGAA
66 CAACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTG-TTT-CTCTTGGTTCTTGGAC
* * *
20236580 AAACTTCCGAGCTT-TTCAAACTTTTACGAGTTCTTTTATAA-TTTCAGTTCCATAAAGTATTCA
129 AAACTTCCGAACTTGTT-AAACTTTTACGAGTTCTTTTATAACTTT--GTTCCTTACAGTATTCA
* * * *
20236643 AGACGATCCATTCCTTCGAGTAA-TTTTTCAAACATTCCATGCTCGAAAAATCGCATC-ATTTGG
191 AGACGATACATTCCTTCGAGCAACTTTCT-AAACATTCTATGCTCGAAAAATCGCATCAATTT-G
* * * * *
20236706 TCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTTGTTGTTTGAATTAAAAACTTATTTACTTGAG
254 -CTAAATTGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAG
* *
20236770 AATTGTTT-TCTCTCTTGGTTCTTGGACGAACTTTC--ATTCTAGTCAAACTTTTACGAGTTCTT
317 AATTGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAATT-T--TCAAACTTTTATGAGTTCTT
* * * * *
20236832 TCATAACTTCGGTTCCTTAAAGTATTCGAGATGATCCATTTCTTCGAGCAAGTTTCTGAACATTC
379 TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAA-TTTTTGAACATTC
* * * * * * *
20236897 TATTCTTGGGAAATTGCAGCATTTGGTCTAAATTGTTTTTCATTTTGGAAACAAGTTTTGGCCTT
443 CATTCTTGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
20236962 TGAATCAAAAACTTATTTACGTGAGAATTATTTCT-TTAGG-TCCTTGGACGAACTTTTGAACTT
508 TAAAACAAAAACTTATTTACGTGAGAATTGTTTCTCTT-GGCT-CTTGGACGAACTTTCGAACTT
* *
20237025 GTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTA
571 TTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTA
20237065 CAATATTCAA
Statistics
Matches: 2221, Mismatches: 256, Indels: 107
0.86 0.10 0.04
Matches are distributed among these distances:
634 8 0.00
635 568 0.26
636 4 0.00
637 3 0.00
638 41 0.02
639 50 0.02
640 190 0.09
641 127 0.06
642 323 0.15
643 466 0.21
644 24 0.01
645 205 0.09
646 203 0.09
647 9 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (637 bp):
TTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACAA
ACTTCCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTTGTTCCTTACAGTATTCAAGACG
ATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAAAAATCGCATCAATTTGCTAAATT
GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTC
TCTCTCTTGGTTCTTGGACGAACTTCCAAATTTTCAAACTTTTATGAGTTCTTTTATAACTTCGG
TTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTTGGGAAA
TCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACT
TATTTACGTGAGAATTGTTTCTCTTGGCTCTTGGACGAACTTTCGAACTTTTCAAACTTTTACGA
GTTCTTTTATAACTTGGTTCCTTATATCAAGACGATCCATTCCTTCGAGCAA
Found at i:20237481 original size:20 final size:21
Alignment explanation
Indices: 20237445--20237486 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
20237435 AATTTATAGG
*
20237445 CCTGAATTGACCTTTCAAATT
1 CCTGAATTGACCCTTCAAATT
20237466 CCTGAA-TGACCCTTCAAATT
1 CCTGAATTGACCCTTCAAATT
20237486 C
1 C
20237487 GGTCATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.33
Consensus pattern (21 bp):
CCTGAATTGACCCTTCAAATT
Found at i:20237569 original size:50 final size:50
Alignment explanation
Indices: 20237491--20237598 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 50
20237481 AAATTCGGTC
* *
20237491 ATTTAACTAACATGGGAGTTACATAATGCATGAT-AGAATTTATGATGCAT
1 ATTTAACTAACATGGAAGTTACATAATGCATG-TCAGAATTTATGATGCAA
* **
20237541 ATTTAACTAACATGTAAGTTAC-TCAATGCATGTCATTATTTATGATGCAA
1 ATTTAACTAACATGGAAGTTACAT-AATGCATGTCAGAATTTATGATGCAA
*
20237591 ACTTAACT
1 ATTTAACT
20237599 GATCATGAGA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
49 2 0.04
50 48 0.96
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (50 bp):
ATTTAACTAACATGGAAGTTACATAATGCATGTCAGAATTTATGATGCAA
Found at i:20237838 original size:17 final size:17
Alignment explanation
Indices: 20237807--20237839 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
20237797 CAAACACTTA
20237807 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
20237824 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
20237840 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:20239254 original size:19 final size:19
Alignment explanation
Indices: 20239230--20239273 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
20239220 CACTCTTTCT
20239230 TTTCTTTCTTC-ATTCTCGA
1 TTTCTTTCTTCAATT-TCGA
20239249 TTTC-TTCTTCAATTTCGA
1 TTTCTTTCTTCAATTTCGA
*
20239267 TCTCTTT
1 TTTCTTT
20239274 TCTCACACCC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.11, C:0.25, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTCTTTCTTCAATTTCGA
Found at i:20240341 original size:20 final size:20
Alignment explanation
Indices: 20240290--20240346 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 20
20240280 GATTTTTTTA
*
20240290 TTTTTTTCAATATTTTG-AT
1 TTTTTTTCAATTTTTTGAAT
*
20240309 TTTTTTTC-TTTTTTTGAAT
1 TTTTTTTCAATTTTTTGAAT
*
20240328 TTTTTTTCACTTTTTTGAA
1 TTTTTTTCAATTTTTTGAA
20240347 ACACGAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 6 0.18
19 18 0.55
20 9 0.27
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.72
Consensus pattern (20 bp):
TTTTTTTCAATTTTTTGAAT
Found at i:20241587 original size:17 final size:17
Alignment explanation
Indices: 20241556--20241588 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
20241546 CAAACACTTA
20241556 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
20241573 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
20241589 TGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:20242196 original size:216 final size:216
Alignment explanation
Indices: 20241765--20248698 Score: 7488
Period size: 215 Copynumber: 32.3 Consensus size: 216
20241755 TGTTTTTATC
* * * *
20241765 TTAAATTAAAAACTTATTTACATGAGAAATGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAA
1 TTAAAATAAAAACTTATTTACGTGAGAATTG-TT-TCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * * *
20241830 CTTTTCAAACTTTTATGAGCTCTTTTATAACTTCGGTTCCTTAAAGTAGTCAAGACAATCAATTC
64 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * *
20241895 CTTTGAGCAATTTT-TGAACATTCCATTCTCGGGAAATCGCATCATTTAGTATAAATAGTTTTTT
129 CTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
20241959 ATTTTGTAAACAAGTTTTTGGTCT
194 ATTTTGTAAACAAG-TTTTGGTCT
** * * *
20241983 TTAAAACGAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACTTTCGAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * * * *
20242048 AGTCAAACTTTTATGAGTTCTTTCATAACTTCGGTTCTTTAAAGTATTCGAGACAATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * ** * * * *
20242113 TCGAGCAATTTTCTGAACATTCTATTCTTGGGAAATTACAGCATTTGGTCTAAATTGTTTTTAAT
131 TCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
*
20242178 TTTGGAAACAAGTTTTGGT-T
196 TTTGTAAACAAGTTTTGGTCT
** * *
20242198 TTTGAATCAAAAACTTATTTAAGTGAGAATTG-TT-TCTCTTGGTCCTTGGACGAACTTCCGAAC
1 TTAAAAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * * * *
20242261 TTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTGCTTACAGTATTCAAGACGGTACATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * * * * ** * *
20242326 TTCGAGCAACTTTCTAAACATTCTATGATAGAAAAATCGCATCATTT-TTCTAAATAGTTTTTCA
130 TTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
20242390 TTTTGTAAACAAGTTTTGTTCT
195 TTTTGTAAACAAGTTTTGGTCT
* *
20242412 TT-AAATAAAAAACTTATTTACGTGAGAATTGTATCTCTGTCTTGGTTCTTGGACGAACTTCCAA
1 TTAAAAT-AAAAACTTATTTACGTGAGAATTGT-T-TCTCTCTTGGTTCTTGGACGAACTTCCGA
* *
20242476 ACTTTTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
63 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * *
20242541 CCTTTGAGCAATTTT-TGAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTT
128 CCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
*
20242605 CATTTTGTAAATAAGTTTTGGTCT
193 CATTTTGTAAACAAGTTTTGGTCT
* * *
20242629 TTAAAACAAAAACTTATTTACGTGAGAATTG--T-TCTCTTGGCTGTTGGAC--A------AACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* *
20242683 T-CCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGACGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * *
20242746 TCGA-CAAATTTTTTGAACATTCCATTCACGGGAAATCGCAGCATTTGGTCTAAATAGTTTGTCA
131 TCGAGC-AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
20242810 TTTTGTAAACAACTTTTGATCT
195 TTTTGTAAACAAGTTTTGGTCT
* * * * * * * * *
20242832 TTGAATTATATA-TTAGTTTACGTGAGAATTGTTCCTCTTTTGGTTCTTGGTCGAACGTCCTAAC
1 TTAAAATAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * * * * *
20242896 ATATCAAACTTTTACGAATTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCCATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
*
20242961 TTCGAGCAATTTT-TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC
130 TTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* *
20243025 ATTTTGTAAA-AAGGTTTTGTTGT
194 ATTTTGTAAACAA-GTTTTGGTCT
* * *
20243048 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * *
20243113 AGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCGAGACGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * * * * *
20243178 TCGAGCAATTTT-TCGAACAGTCTAT-CTTGGGAAATTGCAGCATTTGGTCTAAATTGTTTTTAA
131 TCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
20243241 TTTTGGAAACAAGTTTTGGTCT
195 TTTTGTAAACAAGTTTTGGTCT
* * * * *
20243263 TT-GAATCAAAAACTTATTTACGTGTGAATTG-TT-TCTCTTGGTCCTTGGACAAACTTTCGAAC
1 TTAAAAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * * *
20243325 TTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTACAA-TATTCAAGATGATACATTC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCATTC
* * * * * * * * * *
20243389 CTTCGGGCAACTTTCTAAAAATTCTACGCT-AGAAAAGTCGCATTATGTT--TC-AAATTGTTTG
129 CTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAA-TCGCATCAT-TTGGTCTAAATAGTTTG
*
20243450 TCATTTTGCAAAACAAGTTTTGGTCT
192 TCATTTTG-TAAACAAGTTTTGGTCT
* * * * *
20243476 TTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTTGTTCATGGATGAACTTCCAAA
1 TTAAAATAAAAACTTATTTACGTGAGAATTG-TT-TCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * *
20243541 CTTTTCAAACTTTTATGAGTTCTCTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
64 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * *
20243606 CTTTGATCAATTTT-TGAACATTCCATTCTCGAGAAATCGCATCATTTAGTCTAAATAGTTTTTC
129 CTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* *
20243670 ATTTTGTAAATAAGATTTGGTCT
194 ATTTTGTAAACAAGTTTTGGTCT
* * * * * *
20243693 TTATAACAAAAACTTATTAACGTGAGAATTG-TT-TCTCTTGGCTGTTGGACGAACATCCGAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * *
20243756 TTTCAAAC-TTTATGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGATGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* ** * *
20243819 TCGAGTAATTTTCCAAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCAT
131 TCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
*
20243884 TTTGTAAACAACTTTTGGTCT
196 TTTGTAAACAAGTTTTGGTCT
* * *
20243905 TTGAATTAAATACTTATTTACGTGAGAATTG-TT-TCTC-TGGTTCTTGGACGAACTTCCGAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* *
20243967 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * ** * * *
20244032 TCGAGCAACTTTCTAAATATTATATGCTTGGGAAATCGCATCATTT--ACTAAATTGTTTGTCAT
131 TCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* *
20244095 TTTATAAACAAGTTTTGGTCC
196 TTTGTAAACAAGTTTTGGTCT
* * * *
20244116 TTAAATTAAAAACTTATTTATGTGAGAATTTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAAC
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTT-TCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * * * * * *
20244181 TTTTCAAACCTTTACGAGTTCTTATGTAACTTTGATTCCTTACAGTATTCAAGACGATCCATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* *
20244246 TTCGAGCAATTTT-TCAAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
130 TTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* * *
20244310 ATATTGTAAA-AAGGTTTTGTTGT
194 ATTTTGTAAACAA-GTTTTGGTCT
* * * *
20244333 TT-AAATTAAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGATGAAACTTTCGAAC
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTCCGAAC
* * * * *
20244397 TAGTGAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAATGTATTCAGGACGATCCATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * * * * * * *
20244462 TTCGAGCAATTCTCTAAACATTCTATTCT-TGGAAATAGCAGCATTTTGTCTAAATAGTTTGTCA
130 TTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
20244526 TTTTGGAAACAAGTTTTGGT-T
195 TTTTGTAAACAAGTTTTGGTCT
** * * * *
20244547 TTTGAATCAAAATCTTATTTATGTGAGAATT-TTT-TCTGTTGGTTCTTGGACAAACTTCCGAAC
1 TTAAAAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* *
20244610 TTGTCAAACTTTTACGAGTTCTTTTAAAACTTCGGTTCC-TAATAGTATTCAAGACGATACATTC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGACGATCCATTC
* * * * ** * * *
20244674 CTTCGAGCAACTTTCTAAAAATTCTATGCTCGAAAAATCACATCATTT-ATCTAAATTGTTTGTC
129 CTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
20244738 ATTTTGTAAACAAGTTTTGGTCT
194 ATTTTGTAAACAAGTTTTGGTCT
* * * * * * *
20244761 TTAAATTTAAAACTTTTTTACGTAAGAATTGTTTCTCTCTTCGTTCTTGGACGAACATCCAAACA
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC-
* * **
20244826 TT-TCAAACTTTTACGAGTTTTTTTATAACTCCTGG-AACTTAAAGTATTCAAGACGATCCATTC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * *
20244889 CTTTGAGCAATTTT-TGAACATTCCATTCTCGGGATATCGCATCATTTAGTCTAAATAGTTTTTC
129 CTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
*
20244953 ATTTTGAAAACAAGTTTTGGTCT
194 ATTTTGTAAACAAGTTTTGGTCT
* * * *
20244976 TTAAAACAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGCTGTTGGACAAACTTCCGAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* *
20245039 T-TCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGACGATCCATTCAT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * *
20245102 TCAAGCAATTTT-TCGAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
131 TCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
** *
20245166 TTTTGTAAACAACATTTGGTCC
195 TTTTGTAAACAAGTTTTGGTCT
* * * * * * * *
20245188 CT-GAATAAATACTTATTTATGTGAGAATTGTTTCGCTTTTGGTTCTGGGATGAACTTCCGAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * ** * *
20245252 TGTCAAACTTTTATGAGTTCTTTTATAATTTTAGTTCCATAAAGTATTCAAGACGATCCAATCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * *
20245317 TTGA-CTAGTTTTTTGAACATTCCATGGTCGGGAAATCGCATCATTTGCTCTAAATAGTTTGTCA
131 TCGAGC-AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
20245381 TTTTGTAAA-AAGTTATTGTTGT
195 TTTTGTAAACAAGTT-TTGGTCT
* * * * *
20245403 TTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCAAACA
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * * * *
20245466 AGTCAAAATTTTATGAGTTCTTTCATAACTTCGGTT-CGTAAATGTATTCAAGACGATCCATTTC
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA-GTATTCAAGACGATCCATTCC
* * * ** * *
20245530 TTCGAGCAATTGTCTAAACATTCTATTATCGGGAAAATAGCAGCATTTGGTCTAAATAGTTTGTC
130 TTCGAGCAATTTTCTGAACATTCCATGCTCGGG-AAATCGCATCATTTGGTCTAAATAGTTTGTC
* *
20245595 ATTTTGCAAACTAGTTTTGGTCT
194 ATTTTGTAAACAAGTTTTGGTCT
* *
20245618 TT-GAATCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGAAGAACTTCCGAAC
1 TTAAAAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * * * * *
20245680 TAGTCAACCTTTTACGAGTACTTTTATAACTTCGGTTCCTTATAGCATTCAAGACGATACATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * * * ** * * *
20245745 TAT-GAGCAACTTTCTAAACATTCTATGCTTGAAAAATGGCATCATTT-TTCTAAAT--TGTGTC
130 T-TCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
20245806 ATTTTGTAAACAAGTTTTGGTCT
194 ATTTTGTAAACAAGTTTTGGTCT
* * * * * **
20245829 TTAAATTAAAAACTTATTTACGTTAAAATTATTTCTCGCTTGGTTCTTGGACGAACTTCTAAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * * * * *
20245894 TTTC-AACTTTTATGAGCTCTTTAATAACTTCGGTTCTTTAAAGTATTCAAGATGACCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
** * * * * *
20245958 TTAAGCAATTTT-TGAAAAATTCCATTCTCGGGAAATCGCATCATATAGTCTAAATA-TTTTTCA
131 TCGAGCAATTTTCTG-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
20246021 TTTTGTAAATAAGTTTTTGTCT
195 TTTTGTAAACAAGTTTTGGTCT
* * * **
20246043 TTAAAACGAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGCTGTTGGACGAACTTCTAAAC
1 TTAAAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * * * * *
20246106 TTTTCAAAATTTTACAAGTTCTTCTATAACTT-GGTTCCTTACAGTATTCATGACGATCCATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * *
20246170 TTCGAGCAATTTTC-GAACATTCCATGGTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCA
130 TTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
20246234 TTTTGTAAACAACTTTTGGTGT
195 TTTTGTAAACAAGTTTTGGTCT
* * **
20246256 TTGAATTAAATGCTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * * *
20246319 TGTCAAACTTTTACGAGTTCTTTTTATAGCTTCAGTTCCTTACAGTATTCAAGACGTTACATTCC
66 TGTCAAACTTTTACGAGTTC-TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * * * * * ** * * *
20246384 TTCGAGCAACTTTCTAAACATTCTACGATAGAAAAAGCGCATCATTT-TTCTAAATTGTTTGTCA
130 TTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
20246448 TTTTGTAAACAAGTTTTTGTCT
195 TTTTGTAAACAAGTTTTGGTCT
* * * * *
20246470 TTAAATTAAAAACTTATTTATGTGAAAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAA
1 TTAAAATAAAAACTTATTTACGTGAGAATTG-TT-TCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * *
20246535 CTTTTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTATAGTATTCAAGATGATTCATTC
64 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
** * * * * * *
20246600 CTTTAAGCAATTTT-TGAACATTCCATTCTCGAGAAATCGGATCATGTAGTCTAAATAGTTTTTC
129 CTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* *
20246664 ATCTTGTAAATAAG-TTTGGTCT
194 ATTTTGTAAACAAGTTTTGGTCT
** * * * * * * *
20246686 TTAAAACGAAAACTTATCTACGTGAGAGTTG-TT-TCTCTTAGCTGTTGGATGAACTTCCAAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * * * * *
20246749 TTTTAAACTTTTTCGAGTTCTTTTATAACTT-GGCTCCTTATAGTATTCAAGATGATCCACTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
20246813 TCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
131 TCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* * *
20246878 TTTGTAAATAACTTTTGGTCC
196 TTTGTAAACAAGTTTTGGTCT
* * ** * * * * * * *
20246899 TTGAATTAAGTACTTATTTACATGGGAAACTGTTTCGCTTTTTGTTCTTGGACGAACTTTCGAAC
1 TTAAAATAAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * * *
20246964 TAGTCAAACTTTTATGAGTTCTTTCATAACTTCGGTTCCTTAATGTATTCAAGACGATCCATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * ** * * *
20247029 TTCGAGCAATTTTCTGAATATTCTATTATCGGGAAATAGCAACATTTGGTCTAAATAGTTTATCA
130 TTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
20247094 TTTTGCAAACAAGTTTTTGTCT
195 TTTTGTAAACAAGTTTTGGTCT
* *
20247116 TT-GAATCAAAAACTTATTTACGTGAGAATTG-TT-TCTC-TGGTTCTTGGAAGAACTTCCGAAC
1 TTAAAAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
*
20247177 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTATAGTATTCAAGACGATCCATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * * * *
20247242 -TCTGATCAATTTT-TGAACATTCCATTCTCGAGAAATCGCATCATTTAGTCTAAATAGTTTTTC
130 TTC-GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
*
20247305 ATTTTGTAAATAAG-TTTGGTCT
194 ATTTTGTAAACAAGTTTTGGTCT
* ** ** * *
20247327 CTAAAACCAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTTCGAACTAT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTC-T--C--TT-G--GTTC-TT-GGACGA-
* * * * * *
20247392 TCCTTCCAAACTTTTCAAACTTTTACGAGTTCTTTGATAACTT-TGTTCCTTACAGTATTCAAGA
55 -ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
** * * ** *
20247456 TTATCCATTCCTTCAAGCAATTCTCCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAA
119 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
*
20247521 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
184 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * *
20247554 TTGAATTAAATACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * *
20247617 TGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGTCGATACATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * ** * **
20247682 TCGAGCAATTTTTTAAATATTATATGCTCGGGAAATCGCATCATTT-TTCTAAATTTTTTGTCAT
131 TCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* *
20247746 TTTATAAACAAGTTTTGGTCC
196 TTTGTAAACAAGTTTTGGTCT
* * * *
20247767 TTAAATTAAAAACTTATTTATG-GAAAATTGTTCCTCTCTCTTGGTTCTTGGACGAACTTCCAAA
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTT--TCTCTCTTGGTTCTTGGACGAACTTCCGAA
* * *
20247831 CTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTCAAGACAATCCATTC
64 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
** *
20247896 CTTCGAGCAATTTTCCAAAGATTCCATGCAT-GGGAAATCGCATCATTTGGTCTAAATAGTTTGT
129 CTTCGAGCAATTTTCTGAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
*
20247960 CA-TTTGTAAACAACTTTTGGGTCT
193 CATTTTGTAAACAAGTTTT-GGTCT
* * * * * *
20247984 TTGAATTATATATTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * * *
20248049 TGTCAAACTATTACGAGTTC-TTTATAATTTCAGTTCCATAAAGTATTCAAGACAATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * *
20248113 TTGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTATCAT
131 TCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* * *
20248178 TTTGTAAA-AATGTATTGTTAT
196 TTTGTAAACAA-GTTTTGGTCT
** * * * * *
20248199 TGGAATTAAAAACTTATTTATGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * ** * * *
20248264 AGTCAAAATTTTTTGAGTTCTTTCATAACTTCGATTCC-TAAATGTATTCAAGACGATCCATTTC
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA-GTATTCAAGACGATCCATTCC
* * * * *
20248328 TTCGACCAA-TTTCTGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCA
130 TTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
20248392 TTATGCAAACAAGTTTTGGTCT
195 TTTTGTAAACAAGTTTTGGTCT
* * * * *
20248414 TT-GAATCAAAAACTTATTTACTTGAGAATTG-TT-TCTCTTGATTCTTGGAAGAACTTTCGAAC
1 TTAAAAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * *
20248476 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACTATACATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * * * * * * * *
20248541 TTCGAGAAACTTTCTAAAAATTCTATGCTAGGGAAATCGCATAATTT-TTCTAAAT--TCTTGTT
130 TTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT-TTGTC
*
20248603 ATTTTGTAAACAAGTTTCGGTCT
194 ATTTTGTAAACAAGTTTTGGTCT
* * * ** *
20248626 TTAAATTGAAAACTTATTTACGTGAAAATTGTTTCTCTCTTCATTCTTGGACGAACTTCCAAACT
1 TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
*
20248691 TTTCAAAC
66 TGTCAAAC
20248699 ATTCCATTCT
Statistics
Matches: 5626, Mismatches: 933, Indels: 318
0.82 0.14 0.05
Matches are distributed among these distances:
201 1 0.00
202 44 0.01
203 115 0.02
204 5 0.00
206 13 0.00
208 1 0.00
210 3 0.00
211 313 0.06
212 672 0.12
213 951 0.17
214 646 0.11
215 1032 0.18
216 936 0.17
217 611 0.11
218 102 0.02
219 2 0.00
220 3 0.00
222 3 0.00
223 2 0.00
224 4 0.00
225 37 0.01
226 97 0.02
227 33 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
TTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
TCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
TTTGTAAACAAGTTTTGGTCT
Found at i:20249524 original size:213 final size:214
Alignment explanation
Indices: 20248690--20257264 Score: 4826
Period size: 213 Copynumber: 40.1 Consensus size: 214
20248680 ACTTCCAAAC
* * * * * * * *
20248690 TTTTC-AAACATTCCATTCTCAGGAAGTCACATCATTTAGTTTAAATAGTTTTTCACTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
20248754 CAAGTTTTGGTCTTTAGAA-TGAAAATTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACC
66 CAAGTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACG
* * * *
20248818 AACTTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-TGTTCCTTACAATATTCAAGA
130 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
*
20248882 TGATCCATTCCTTCGAGCAA
195 CGATCCATTCCTTCGAGCAA
* *
20248902 TTTT-TAAATATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * ** * * * * * *
20248966 CAA-CTTTGGTCCTTGAATTAAGTACTTATTTACGTGGGAACTCTTTCGCTTTTGGTTCTGGGAT
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT--CTCTTGGTTCTTGGAC
* * * * * * * *
20249030 AAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCGAG
129 GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
20249095 ACGATCCATTCCTTCGAGCAAA
194 ACGATCCATTCCTTCGAGC-AA
* * * * *
20249117 TTTT-TGAACATTCCATGGTCGGGAAATCGCATCATTTGGTCTAAATAATTTGTTATTTTATAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20249181 AAAGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGAC
* * * * * *
20249246 GAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTCATAACTTCGATTCTTTA-ATGTATTCAA
129 GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACA-GTATTCAA
20249310 GACGATCCATTCCTTCGAGCAA
193 GACGATCCATTCCTTCGAGCAA
* * * ** * * * * *
20249332 TTTTCTGAATA-TCTATTATCGGGAAATAGCAGCTTTTGGTAGT-AATAGTTTGTCATTTTGCAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTAAATAGTTTGTCATTTTGTAA
* * * *
20249395 ACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTATTGGTTCTTTGAAG
65 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACG
* * *
20249460 AACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTAGAACTTCGGTTCCTTACAATATTCAAGA
130 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
* *
20249525 CGATCCATTCCTTTGATCAA
195 CGATCCATTCCTTCGAGCAA
* * * *
20249545 TTTT-TGAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * ** * *
20249609 TAAGTTTTGGTCTTTAAAACAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* * *
20249674 AC-T------TT-TCAAAGTTTTACGAGTTCTTTTATAACTT-TGTTCCTTACAGTATTCAAGAT
131 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
20249730 GATCCATTCCCTT-GAGCAA
196 GATCCATT-CCTTCGAGCAA
* * * * *
20249749 TTCTCCAAACATTTCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20249814 CAACTTTTGGTCTTTAAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* * *
20249879 ATTTCTGAACTTGTCAAACTGTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
131 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
* *
20249944 GATACATTCCTTCGAGCAC
196 GATCCATTCCTTCGAGCAA
* ** * * * *
20249963 TTTTCTAAATATTATATGCTCGGGAAATCGCCTCATTT-TTCTAAATTGTTTGTCATTTTATAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
20250027 CAAGTTTTGGTCCTTAAATTAAGAACTTATTTTCGTGAGAATTGTTCCTCTCTCTTGGTTCTTGG
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-T--T-TCTCTTGGTTCTTGG
* * ** *
20250092 ACGAACTTCCAAACTTTTCAAACTTTTATTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
127 ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCA
20250157 AGACGATCCATTCCTTCGAGCAA
192 AGACGATCCATTCCTTCGAGCAA
* * * *
20250180 TTTTCCAAAGATTCCATGCTTGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * * *
20250245 CAACTTTTGGTCTTTGAATTATATATTTATTTATGTGAGAATTGTTTCTCTTTTGGTTC-TGGAT
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGAC
* * * * * *
20250309 GAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCCAG
129 GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
*
20250374 AAGATCCATTCCTTCGAGCAA
194 ACGATCCATTCCTTCGAGCAA
* * * *
20250395 TTTT-TCGAACATTCTATTCTC-GGAAATCGCATCATTTAGTCTAAATAGTTT-TCATTTTGTAA
1 TTTTCT-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* ** * * * *
20250457 ACAAGTTTTGGTCTTTAAAACGAAAAA-TT-TTGTACGTGAGAATTGTTTCTCTTGGCTGTAGCA
65 ACAAGTTTTGGTCTTT-GAATTAAAAACTTATT-TACGTGAGAATTGTTTCTCTTGGTTCTTGGA
* * * * * *
20250520 TGAACTTCCAAACTTTTTAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTGCAGTATTCAT
128 CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAA
*
20250584 GACGATCCAATCCTTCGAGCAA
193 GACGATCCATTCCTTCGAGCAA
* * *
20250606 TTTTCTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* ** *
20250671 CAAACTTTTGGTCTTTGAATTAAATGCTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGGCG
66 C-AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACG
* *
20250736 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACAATATTCAAGA
130 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
* *
20250801 CGATACATTTCTTCGAGCAA
195 CGATCCATTCCTTCGAGCAA
* * * * ** * *
20250821 CTTTCTAAACATTCTATGATAGAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
20250885 CAAGTTTTGGTC-TTAAATTAAAAACTTATTTACGTGA-AATAGTTTCTCTCTCTTGTTATTGGA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCT-TGGTTCTTGGA
* * * * *
20250948 CGAACTTCCAAACTTTTCAAACTTTTACGAGTTCCTTTATAA-TTTGGTTCCTTATAGTATTCAA
128 CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAA
* **
20251012 GATGATCCATTCCTTTAAGCAA
193 GACGATCCATTCCTTCGAGCAA
* * * * * * *
20251034 ATTT-TGAACATTCCATTCTCGGGAAATCGCATCATGTAGTCTGAATAGTTTTTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *** * * * * *
20251098 TAAGTTTTGGTCTTTAAAACGAAAAGTTATCTACGTGAGAATTGTTTCTCCTGGCTGTTGGACGA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* * * *
20251163 ACTTTCGAACTTTTCAAACTTTT-CTGAGTTCTTTTATAACTT-GGTTCCTTATAGTATTGAAGA
131 ACTTCCGAACTTGTCAAACTTTTAC-GAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
* * *
20251226 TGATCTATTCTTTCGAGCAA
195 CGATCCATTCCTTCGAGCAA
* ** * *
20251246 GTTTCCGAACATTCCATGCTCGGGAAATCGTATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * * * *
20251311 CAACTTTTGGTCCTTGAATTAAATACTTATTTACGTGGGAACTCTTTCTCTTTTGGTTCTGGGAC
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGAC
* * * * * *
20251376 AAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAG
129 GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
*
20251441 ACGATCCATTCCTTCGATCAA
194 ACGATCCATTCCTTCGAGCAA
* * * * *
20251462 TTTTTTGAACATTCCATGGTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTTATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
** *
20251527 -AAGGTTTTATTGTTTGAATTAAAAA-TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
66 CAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGA
** * * * * **
20251590 CGAACTTTTGAACTAGTCAAACATTTATGAGTTCTTTCATAACTTCATTTCCTTA-ATGTATTCA
128 CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACA-GTATTCA
* *
20251654 AGACGATCCGTTCCTTCAAGCAA
192 AGACGATCCATTCCTTCGAGCAA
** * * * * *
20251677 TTTTCTAAACATTCTGTTCTCGGGAAATTGCAGCATTTGGTCTAAATAGTTTGGCATTTTGGAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * *
20251742 CTAGTTTTGATCTTTGAATCAAAAACTTATTTACGT--G-A--G-----CATGGTTCTTGGATGA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* *
20251797 ATTTCTGAACTTGTCAAACTTTT--GAG----------A-----GTT-CTTACAGTATTCAAGAC
131 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
*
20251844 GATACATTCCTTCGAGCAA
196 GATCCATTCCTTCGAGCAA
* * * * * * * * * *
20251863 CTTCCTAAAAATTCTATGCTAGGGAAATCTCATAATTT--TCTAAAT-TTTTTTCATTTTGGAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
20251925 CAAGTTTTGGTCATTGAATCAAAAACTTATTTACGTGATAATTGTTTCACTTGGTTCTTGGACGA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
** *
20251990 ACTTTTGAACTTGTCAAA-TTTTACGAGTTCATTTATAACTTCGGTTCCTTACAGTATTCAAGAC
131 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
* * *
20252054 TATACATTCCTTTGAGCAA
196 GATCCATTCCTTCGAGCAA
* * ** * * **
20252073 CTTTCTAAAAATTGTATGCTAGGGAAATCGCATAATTT--TCTAAATTCTTTGTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20252136 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTGGTTCTTGGACA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-TGGTTCTTGGACG
* * * * * *** * * * * *
20252201 AACTTCCAAACTTTTTAAAC-ATT-CCA-TTCTCGGGA-AA-TTAC--ATCATT-TAGT-CTAAA
130 AACTTCCGAACTTGTCAAACTTTTACGAGTTCT-TTTATAACTT-CGGTTCCTTACAGTATTCAA
* ** * *
20252257 TA-G-T-TTTTCACTTTGTAAACAA
193 GACGATCCATTC-CTTCG--AGCAA
* * * * * ** * *
20252279 GTTTTGGTCTTTAGAATGAAAATT-TAT-TTACGTGAGAATTGTTTC-TCTTGGCTGTTGGACCA
1 --TTT--TC--T---A--AACATTCCATGCT-CGGGA-AATCGCATCAT-TTGG-T-CT--A-AA
* * * * * * * *
20252341 -ACTTCTG-AACTTT-T---CAAGCTTTTACGAGT-TCTT---TT-ATAACTT-GTT-CCTTACA
47 TAGTT-TGTCATTTTGTAAACAAG-TTTT--G-GTCT-TTGAATTAAAAACTTATTTACGTGAGA
* * *** * * * * * * * * **
20252393 A-T-ATTCAAGACGATCCATTCCTTCGA-GCAATTTTCTGAACAT-TC-CA-TGCTCAGGAAATC
106 ATTGTTTC---TC--TTGGTT-CTTGGACG-AA-CTTCCGAACTTGTCAAACT-TTTACGAGTTC
** * * * * * ** * ** * * * *
20252452 --GCATCA-TTTGG-T-CTAAATAGTTTGTCATTATGTAAACA-ACTTTTG-GTC-C
162 TTTTATAACTTCGGTTCCT-TACAGTAT-TCAAGACG-ATCCATTCCTTCGAG-CAA
* * * * **
20252501 TTGAAT-TAAGTAC-TT--AT-TTACGAGGGAATTGTTTCACTTTTGGTTCTGGGACAAACTTCC
1 TT--TTCTAA--ACATTCCATGCT-CG-GGAAATCGCATCA--TTTGG-TCT-----AAA--T--
** * * ** * * * * * **
20252561 GAACTTGTCAAACTTT-T--ACGAGTTCTTTTTTAATTTCAGTTCCATAAA-GTA-TT-CAAGAC
48 -AGTTTGTC--ATTTTGTAAACAAG-T-TTTGGT-CTTTGAATT--AAAAACTTATTTACGTGA-
*** * * * * * * * *
20252620 G-ATCCATTC-CTTCGAGCAATTTTTCGAAC-ATTCCATGGTCGGAAAATCG-CATCATTTGGTC
104 GAATTGTTTCTCTT-G-G---TTCTT-GGACGA--AC-T--TCCG-AACTTGTCA-AACTT--T-
** * *** ** *** * * * * * *
20252681 TAAATAGTTTGTCATTTTGTAA-AAAGGTTTGTTGTTTGAATTAAAAAC--T-TATTTACGT-GA
153 T-ACGAG--T-TC-TTTTATAACTTCGGTTCCTT-ACAGTATTCAAGACGATCCA-TTCCTTCGA
20252741 G-AA
211 GCAA
** ** * * * * * *
20252744 TTGTTTCT-CTC-TT-GGTTCT-TGG--A-CG-AACTTTTGACAAGTC-AAACT--TTTATGAGT
1 -T-TTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTG----GTCTAAA-TAGTTTGTCA-T
* * * * * * * * * *
20252798 TCTT-T-CATAA-CTTCGGTTCCTTAATGTATTCAAGAC-GATCATTCCTTCGAGCAATT-TTTG
58 T-TTGTAAACAAGTTTTGG-T-CTT--TGAATTAAAAACTTAT--TTACGT-GAG-AATTGTTT-
* * * ** * * ** * * **
20252858 AATATT--TTATTATAGGGAAATAGC-AGCTTTTGGTCTAAA-TAGTTTGTC-A-TT-TTGCAAG
113 -CTCTTGGTTCTTGGA-CGAACTTCCGAAC--TT-GTC-AAACT--TTT-ACGAGTTCTT-TTA-
* * * * * * * * *
20252916 CAAGTTTTGG-T-CTT--TG-AATCAA-A--AACTTATTTAC-GCGAG-AA
167 TAA-CTTCGGTTCCTTACAGTATTCAAGACGATC-CA-TTCCTTCGAGCAA
* * * * * *
20252957 TTGTTTCT---C-TT-CTTTCTTGGAAGAACTTTCG-A--ACTT-GTC--AA-ACTTTG-CGAGT
1 -T-TTTCTAAACATTCCATGCTCGG--GAA--ATCGCATCATTTGGTCTAAATAGTTTGTC-A-T
* ** * * * * * * * *
20253009 TCTTTTATAAC---TTCGGGTCCTTACAGTATTCAAGACTATACATTCCTTCGAGCAA--CTTTC
58 T-TTGTA-AACAAGTTTTGGT-CTT--TGAATTAAAAACT-TA-TTTACGT-GAG-AATTGTTTC
***** * * * * * * *
20253069 TAAAAATTCTTTGCTAGGGAA-ATCGCATAATTTTTCTAAA-TTCTT-C--G-TCATTTTGTAAA
114 TCTTGGTTC-TTG-GA-CGAACTTC-C-GAACTTGTC-AAACTT-TTACGAGTTC-TTTTAT-AA
* * * * * * *
20253128 CAAGTTTTGG-TCTTTA-A--ATTAAAAAC--T-TATTTACGT-GAG-AA
170 C----TTCGGTTCCTTACAGTATTCAAGACGATCCA-TTCCTTCGAGCAA
** ** * * * * * * ** *
20253169 TGGTTTCT-CTC-TT-GGTTCTTGGACGAACT-TC-TAAACTT--T-TAAA-ACATT-CCATTCT
1 T--TTTCTAAACATTCCATGCTCGG--GAAATCGCAT-CATTTGGTCTAAATAGTTTGTCATT-T
* * * * * **** * * * **
20253224 CGAGAAATCAAATAATTTAGTC--T-AAAT-AGTTTTTCATTT-TGTAAACAAGTT-TTGGTCTT
60 TG-TAAA-CAAGT--TTTGGTCTTTGAATTAAAAACTT-ATTTACGT-GAGAA-TTGTTTCTCTT
*** * * * * ** * * * ** *
20253283 --TAAAATGAAAAC-ATATTTACGTGAGAATTGT--TTCTCTT--G-GCTGTTGGACCAACTTCT
118 GGT-TCTTG--GACGA-ACTT-C-CGA-ACTTGTCAAACTTTTACGAGTTCTTTTA-TAACTTC-
* * ***
20253340 GAACTTTTCAAACTTTTACGAGTTCATTTATA-AC--TTTGTTCCTT--A-CAA
174 G----GTTC---C--TTAC-AG-T-ATTCA-AGACGATCCATTCCTTCGAGCAA
* * * *** *
20253388 -TATCCAAGACGA-TCCATTCCTTCGAGTAGTTTTTCGAACATTCCATGCTCGAGAAATCGCATC
1 TTTTCTAA-AC-ATTCCA-TGC-TCG-G--G-AAATCG--CA-T-CAT--TTG-G---T--C-T-
* * * * * *
20253451 ATTTGGCCTAAACAGTTTGCCATTTTGTAAACAACTTTTGGTCTCTCAATTAAATACTTATTTAC
44 A--------AAT-AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * *
20253516 GTGAGAATTGTTTCTCTTGGTTCTTCGATGAACTTTCGAACTTCTCAAACTTTTTTACGAGTTCT
100 GTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC--TTTTACGAGTTCT
* * *
20253581 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAA
163 TTTATAACTTCGGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * *
20253633 TTTT-TGAACATTCCATTCTCGGGAAATCGCATTATTTAGTCTAAATA-TTTTTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *** * * *
20253696 CAAGTTTTGGTCTTTAAAACGAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACAA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* * * *
20253761 ACTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-GGTACCTTATAGTATTCAAGAC
131 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
* *
20253825 GATCCATTCATTTGAGCAA
196 GATCCATTCCTTCGAGCAA
* * * * *
20253844 TTTT-TCGAACATTTCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTCGTAA
1 TTTTCT-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * ** * * * *
20253908 AGAACTTTTGGTCCCTGAATTAAATACTTATTTATGTGAGAATTGTTTCGCATCTAGTT-TTGGG
65 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-T-TGGTTCTT-GG
* * * * *
20253972 ACGAACTTCCAAACTTGTCAAACTTTTATGAGTTCTTTTATAATTTCAGTT-CTATAAAGTATTC
127 ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT-TACAGTATTC
20254036 AAGACGATCCATTCCTTCGAGCAA
191 AAGACGATCCATTCCTTCGAGCAA
* * *
20254060 TTTTTTGAACATTCCTTGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTACA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-A
* * * * * *
20254125 A-AGGTATTGTTGC-TTGAATTAAAAACTTATATATGTGAGAATTGTTTCTCTCTTGGTTCTTCG
65 ACAAGTTTTGGT-CTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGG
* * * * * * * *
20254188 ATGAACTTTCGAACTAGTTAAAATTTTACGAGTTCTTTCATAGCTTCGGTTCC-TAAATGTATTC
127 ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACA-GTATTC
*
20254252 AAGACGATCCATTTCTTCGAGCAAA
191 AAGACGATCCATTCCTTCGAGC-AA
* * * * * * *
20254277 TTTT-TGAACATTCTATTCTCGGGAAATAGCAACATTTGGTCTAAATAGTTTGCCATTTTGCAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
** *
20254341 CAAGTTTTGGTCTTTGAATCGAAAACTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* * *
20254406 ACTTCCGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGAC
131 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
* *
20254471 GATACATTCCTACGAGCAA
196 GATCCATTCCTTCGAGCAA
* * * ** * * * *
20254490 CTTTCTAAATATTCTATGCTCGAAAAATGGTATCATTT-TTCTAAATTGTTTGTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20254554 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACATGAAAATTGTTTCTCGCTTGGTTCTTGGAC
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT--CTTGGTTCTTGGAC
** * * * * * * *
20254619 GAACTT-ATACACTTTTTAAACTTTAACGAGTTCTTTTATAACTTTGGCTCCTTAAAATATTCAA
129 GAACTTCCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAA
* **
20254683 GATGATCCATTCCTTTAAGCAA
193 GACGATCCATTCCTTCGAGCAA
* * * * * *
20254705 TTTT-TGAAA-ATTCCCTTCTCGGGAAATCACATCAATTAGTCTAAATAGTTTTTCATTTTGTAA
1 TTTTCT-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * ** * * * *
20254768 ATAAGTTTT-GTCCTTGAAGACAAAAACTTATCTATGTGAGAATTGTTTCTCTTGGCTGTTGGAC
65 ACAAGTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGAC
** * ** *
20254832 GAACTTCTAAACTTTTCATTCTTTTAAGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAG
129 GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
* *
20254896 ACAATCCATTCCTTCGAGTAA
194 ACGATCCATTCCTTCGAGCAA
* * *
20254917 TTTT-GAAACATTCCAGGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
** * * *
20254981 -AAGGTTTTATTGTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGA
66 CAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGA
* * * * *
20255045 CGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCGA
128 CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAA
*
20255110 GACGATCCATTCCTTCAAGCAA
193 GACGATCCATTCCTTCGAGCAA
* * * * * * * *
20255132 TTTTCTGAAA-ATTCTATTC-CTGGGAAATTGCAGCATTTAGTCTAAATTGTTTTTTCATTTTGG
1 TTTTCT-AAACATTCCATGCTC-GGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGT
* * * ** *
20255195 AAACAAATTTTGGTCTTTGAATCAAAAACTTATTTATGTGAGAATTGTTTCTCACGGTCCTTGGA
63 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGA
* * * *
20255260 CAAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTATAGTATTCAA
128 CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAA
** *
20255325 GATAATGCATTCCTTCGAGCAA
193 GACGATCCATTCCTTCGAGCAA
* * * * ** * * *
20255347 CTTTCTAAACATTCTACGCTAGAAAAATGGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20255411 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTCTCGATTCTTGG
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTT-TCTCT-T-GGTTCTTGG
* * * * * * *
20255476 ACGAACTTCCAAACTTTTGAAACTTTTATGAGTTCTCTTACAACTTCGGTTCCTTAAAGTATTCA
127 ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCA
*
20255541 AGACGATCCATTCCTTTGAGCAA
192 AGACGATCCATTCCTTCGAGCAA
* * * * * * *
20255564 TTTT-TGAACATTCAATTCTCGAGAAATCGCATCATTTAGTCTAACTAGTTTCTCA-TTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *** * * *
20255627 CAAGTTTTGGTCTTTAAAACGAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTGTTGGACGA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* * * * *
20255692 ACTTCTGAACTTTTCAAACTTTTA--ATGTTCTTTTATAACTT-AGTTCTTTATAGTATTCAAGA
131 ACTTCCGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
* *
20255754 CGATCTATTCCTTCGAGCTA
195 CGATCCATTCCTTCGAGCAA
* * * *
20255774 TTTTCCAAACATTCCATTCTCGGGAAATCGCATCATTT-ATCTAAATTGTTTGTCATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * *
20255838 CAAGTTCTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGGTATTGGACAA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* * * * * * *
20255903 ACTTTCGAACTTTTCAAACTTTTATGGGTTCTTTCAGAACTTCGGTTCCTTA-ATGTATTCAAAA
131 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACA-GTATTCAAGA
* **
20255967 CAATCCATTTTTTCGAGCAA
195 CGATCCATTCCTTCGAGCAA
* * * * * * *
20255987 TTTTTTGAACATTCTATTCTC-GGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGAAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
20256051 CAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* *
20256116 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAATATTCTAGAC
131 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
*
20256181 GATACATTCCTTCGAGCAA
196 GATCCATTCCTTCGAGCAA
* * ** * * **
20256200 CTTTCTAAATATTATATGCTCAGGAAATCGCATCATTT--TCTAAATTGTTTGTCATTTAATAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20256263 CAAGTTTTGGTC-CTGAAATTTAAAACTTATTTACATGAGAATTGTTTCTCTCTCTTGGTTCTTG
66 CAAGTTTTGGTCTTTG-AATTAAAAACTTATTTACGTGAGAATTG--T-T-TCTCTTGGTTCTTG
* * * * * *
20256327 GACGTACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTTCTTAAAGTATTC
126 GACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTC
*
20256392 AAGACGATCCATTCCTTCGATCAA
191 AAGACGATCCATTCCTTCGAGCAA
* *
20256416 TTTT-TCAAACATTCAATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
1 TTTTCT-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * *
20256480 A-AGGTTTTGTTGTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
65 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGA
* * * *
20256544 TGAACTTTCGAACTAGTCAAAC-TTTACGAGTTCTTTCATAACTTCGGTTCCTTA-ATGTATTCA
128 CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACA-GTATTCA
*
20256607 AGACGATCCATTCCATCGAGCAA
192 AGACGATCCATTCCTTCGAGCAA
* * * * * * * *
20256630 TTTTCTGAACATTCTATTCTTGGGAAATAGTAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20256695 CAAGTTTTGGT-TTTCTAATCAAAAACTTATTTAC---------G-TTCTGTTGGTTCTTGGACG
66 CAAGTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACG
* * * **
20256749 AACTTCCGAACTTATCAAACTTTTACAAGTTCTTTTAAAACTTTTGTTCC-T--A--A--C---A
130 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
20256804 -G-T--ATTCCTTCGAGCAA
195 CGATCCATTCCTTCGAGCAA
* * * ** * *
20256820 CTTTCTAAAAATTCTATGCTCGAAAAATCGCATCATTT-ATCTAAATTGTTTGTCATTTTCG-AA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-GTAA
* *
20256883 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGTTCTTGGACG
65 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACG
* * * * *
20256948 AACTTCCAAACTTCTCAAACTTTTCCGAGTTCTTTTATAACTTCAGTTCCTTAAAAGTATTCAAG
130 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-ACAGTATTCAAG
*
20257013 ACGATCCATTCCTTTGAGCAA
194 ACGATCCATTCCTTCGAGCAA
* ** * * *
20257034 TTTT-TGAACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTAATTTTGTAAA
1 TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* ** * * * *
20257098 -AAGTTTTGGTCTTTAAAACAAAAACTTATATACGTGAGAATTGTTTCTCTTGGCTGTAGGACGA
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* * *
20257162 ACTTCCAAACTTTTCAAAATTTTACGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGAC
131 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
20257226 GATCCATTCCTTCGAGCAA
196 GATCCATTCCTTCGAGCAA
*
20257245 TTTTAC-GAACATTCCATGCT
1 TTTT-CTAAACATTCCATGCT
20257265 TTGAATTAAA
Statistics
Matches: 6543, Mismatches: 1305, Indels: 1030
0.74 0.15 0.12
Matches are distributed among these distances:
183 47 0.01
184 7 0.00
186 60 0.01
187 3 0.00
188 1 0.00
189 50 0.01
190 45 0.01
192 6 0.00
193 31 0.00
194 4 0.00
197 1 0.00
198 1 0.00
199 61 0.01
200 1 0.00
202 4 0.00
203 40 0.01
204 101 0.02
205 143 0.02
206 11 0.00
207 13 0.00
208 15 0.00
209 17 0.00
210 156 0.02
211 416 0.06
212 691 0.11
213 1201 0.18
214 813 0.12
215 969 0.15
216 780 0.12
217 353 0.05
218 96 0.01
219 24 0.00
220 38 0.01
221 21 0.00
222 11 0.00
223 33 0.01
224 22 0.00
225 18 0.00
226 11 0.00
227 3 0.00
228 12 0.00
229 11 0.00
230 8 0.00
231 5 0.00
232 6 0.00
233 3 0.00
234 6 0.00
235 3 0.00
236 4 0.00
237 5 0.00
238 5 0.00
239 4 0.00
240 8 0.00
241 6 0.00
242 17 0.00
243 9 0.00
244 11 0.00
245 9 0.00
246 6 0.00
247 8 0.00
248 11 0.00
249 1 0.00
250 13 0.00
251 23 0.00
252 13 0.00
253 13 0.00
254 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (214 bp):
TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
GATCCATTCCTTCGAGCAA
Found at i:20250715 original size:427 final size:428
Alignment explanation
Indices: 20248690--20257258 Score: 5184
Period size: 427 Copynumber: 20.0 Consensus size: 428
20248680 ACTTCCAAAC
* * * * * * * *
20248690 TTTTCAAACATTCCATTCTCAGGAAGTCACATCATTTAGTTTAAATAGTTTTTCACTTTGTAAAC
1 TTTTCGAACATTCTATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * *
20248755 AAGTTTTGGTCTTTAGAA-TGAAAATTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACCA
65 AAGTTTTGGTCTTTA-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACGA
* *
20248819 ACTTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-TGTTCCTTACAA-TATTCAAGA
129 ACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGA
* * * *
20248882 TGATCCATTCCTTCGAGCAATTTT-TAAATATTCCATGCTCGGGAAATCGTATCATTTGGTCTAA
193 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * ** * * *
20248946 ATAGTTTGTCATTTTGTAAACAA-CTTTGGTCCTTGAATTAAGTACTTATTTACGTGGGAACTCT
258 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * ** * *
20249010 TTCGCTTTTGGTTCTGGGATAAACTT-TCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTT
323 TTCTC-TTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * *
20249074 CAGTTCCATAAAGTATTCGAGACGATCCATTCCTTCGAGCAAAT
386 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AAT
* ** * * * *
20249118 TTTT-GAACATTCCATGGTCGGGAAATCGCATCATTTGGTCTAAATAATTTGTTATTTTATAAAA
1 TTTTCGAACATTCTATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * *
20249182 AAGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
65 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTGTTGGACG
* ** * * * * *
20249247 AACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTCATAACTTCGATTCTTTAATGTATTCAAGA
128 AACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * ** * * * *
20249312 CGATCCATTCCTTCGAGCAATTTTCTGAATA-TCTATTATCGGGAAATAGCAGCTTTTGGTAGT-
193 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTA
* *
20249375 AATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG
257 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * * *
20249440 TTTCT-ATTGGTTCTTTGAAGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTAGAACTTC
322 TTTCTCTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* *
20249504 GGTTCCTTACAA-TATTCAAGACGATCCATTCCTTTGATCAAT
387 GGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * *
20249546 TTTT-GAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAAT
1 TTTTCGAACATTCTATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
** *
20249610 AAGTTTTGGTCTTTAAAACAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTT-G--G-A
65 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACGAA
* * * *
20249671 ----CGAACTTTTCAAAGTTTTACGAGTTCTTTTATAACTT-TGTTCCTTACAGTATTCAAGATG
130 CTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* ** * * *
20249731 ATCCATTCCCTT-GAGCAATTCTCCAAACATTTCATGCTCGAGAAATCGCATAATTTGGTCTAAA
195 ATCCATT-CCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * *
20249795 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAATACTTATTTACGTGAGAATTGTT
259 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* *
20249860 TCTC-TTGGTTCTTGGACGAATTTCTGAACTTGTCAAACTGTTACGAGTTCTTTTATAACTTCGG
324 TCTCTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * *
20249924 TTCCTTACAGTATTCAAGACGATACATTCCTTCGAGC-AC
389 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * * * * *
20249963 TTTTCTAAATATTATATGCTCGGGAAATCGCCTCATTT-TTCTAAATTGTTTGTCATTTTATAAA
1 TTTTC-GAACATTCTATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
20250027 CAAGTTTTGGTCCTTAAATTAAGAACTTATTTTCGTGAGAATTGTTCCTCTCTCTTGGTTCTTGG
64 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG-T--T-TCTCTTGGTTGTTGG
* **
20250092 ACGAACTTCCAAACTTTTCAAACTTTTATTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
125 ACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
** * * *
20250157 AGACGATCCATTCCTTCGAGCAATTTTCCAAAGATTCCATGCTTGGGAAATCTCATCATTTGGTC
190 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * * * *
20250222 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTATATATTTATTTATGTGAGAAT
255 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* *
20250287 TGTTTCTCTTTTGGTTC-TGGATGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAT
320 TGTTTCTC-TTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * *
20250351 TTCAGTTCCATAAAGTATTCCAGAAGATCCATTCCTTCGAGCAAT
384 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
*
20250396 TTTTCGAACATTCTATTCTCGGAAATCGCATCATTTAGTCTAAATAGTTT-TCATTTTGTAAACA
1 TTTTCGAACATTCTATTCTCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
** * * * *
20250460 AGTTTTGGTCTTTAAAACGAAAAA-TT-TTGTACGTGAGAATTGTTTCTCTTGGCTGTAGCATGA
66 AGTTTTGGTCTTT-AAATTAAAAACTTATT-TACGTGAGAATTGTTTCTCTTGGTTGTTGGACGA
* * ** *
20250523 ACTTCCAAACTTTTTAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTGCAGTATTCATGAC
129 ACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* * *
20250587 GATCCAATCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAA
194 GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* **
20250652 TAGTTTGTCATTTTGTAAACAAACTTTTGGTCTTTGAATTAAATGCTTATTTACGTGAGAATTGT
259 TAGTTTGTCATTTTGTAAAC-AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * *
20250717 TTCTC-TTGGTTCTTGGGCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCG
323 TTCTCTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* *
20250781 GTTCCTTACAA-TATTCAAGACGATACATTTCTTCGAGCAA-
388 GTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * ** * * * *
20250821 CTTTCTAAACATTCTATGATAGAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAA
1 TTTTC-GAACATTCTATTCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20250885 CAAGTTTTGGTC-TTAAATTAAAAACTTATTTACGTGA-AATAGTTTCTCTCTCTTGTTATTGGA
64 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCT-TGGTTGTTGGA
* * * *
20250948 CGAACTTCCAAACTTTTCAAACTTTTACGAGTTCCTTTATAA-TTTGGTTCCTTATAGTATTCAA
126 CGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* ** * * * *
20251012 GATGATCCATTCCTTTAAGCAAATTT-TGAACATTCCATTCTCGGGAAATCGCATCATGTAGTCT
191 GACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT
* * * * *** * *
20251076 GAATAGTTTTTCATTTTGTAAATAAGTTTTGGTCTTTAAAACGAAAAGTTATCTACGTGAGAATT
256 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * *
20251141 GTTTCTC-CTGGCTGTTGGACGAACTT-TCGAACTTTTCAAACTTTT-CTGAGTTCTTTTATAAC
321 GTTTCTCTTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTAC-GAGTTCTTTTATAAC
* * * * * *
20251203 TT-GGTTCCTTATAGTATTGAAGATGATCTATTCTTTCGAGCAAG
384 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * *
20251247 TTTCCGAACATTCCATGCTCGGGAAATCGTATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
1 TTTTCGAACATTCTATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * * * * * * *
20251312 AACTTTTGGTCCTTGAATTAAATACTTATTTACGTGGGAACTCTTTCTCTTTTGGTTCTGGGACA
65 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTGTTGGACG
* * * * *
20251377 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGA
128 AACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * *
20251442 CGATCCATTCCTTCGATCAATTTTTTGAACATTCCATGGTCGGGAAATCACATCATTTGGTCTAA
193 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* ** *
20251507 ATAGTTTGTTATTTTGTAAA-AAGGTTTTATTGTTTGAATTAAAAA-TTATTTACGTGAGAATTG
258 ATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * * *
20251570 TTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTAGTCAAACATTTATGAGTTCTTTCATAACTT
322 TTTCTCT-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
** * * *
20251635 CATTTCCTTAATGTATTCAAGACGATCCGTTCCTTCAAGCAA-
386 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * * *
20251677 TTTTCTAAACATTCTGTTCTCGGGAAATTGCAGCATTTGGTCTAAATAGTTTGGCATTTTGGAAA
1 TTTTC-GAACATTCTATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * * * *
20251742 CTAGTTTTGATCTTTGAATCAAAAACTTATTTACGT--G-A--G-----CATGGTTCTTGGATGA
64 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACGA
* * * *
20251797 ATTTCTGAACTTGTCAAACTTTT--GAG----------A-----GTT-CTTACAGTATTCAAGAC
129 ACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* * * * * * * * *
20251844 GATACATTCCTTCGAGCAACTTCCTAAAAATTCTATGCTAGGGAAATCTCATAATTT--TCTAAA
194 GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * * * *
20251907 T-TTTTTTCATTTTGGAAACAAGTTTTGGTCATTGAATCAAAAACTTATTTACGTGATAATTGTT
259 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * *
20251971 TCAC-TTGGTTCTTGGACGAACTTTTGAACTTGTCAAA-TTTTACGAGTTCATTTATAACTTCGG
324 TCTCTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * * *
20252034 TTCCTTACAGTATTCAAGACTATACATTCCTTTGAGCAA-
389 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * * * * **
20252073 CTTTCTAAAAATTGTATGCTAGGGAAATCGCATAATTT--TCTAAATTCTTTGTCATTTTGTAAA
1 TTTTC-GAACATTCTATTCT-CGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20252136 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTGGTTCTTGGACA
64 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-TGGTTGTTGGACG
* * * * *** * * ** * * *
20252201 AACTTCCAAACTTTTTAAAC-ATT-CCA-TTCTCGGGAAATTACATCATTTAGTCTAAATAGTTT
128 AACTTCCGAACTTTTCAAACTTTTACGAGTTCT---TTTATAACTTCGGTT--CCTTAA-AG-TA
**** * * ** * * * * *
20252263 TTCACTTTGTAAACAAGTT--TT-G-GTC--TTTAGAATGAAAATT-TAT-TTACGTGAGAATTG
186 TTCAAGACG--ATCCA-TTCCTTCGAG-CAATTT--TCTGAACATTCCATGCT-CGGGA-AATCG
** * * * * * *
20252320 TTTC-TCTTGGCTGTTGGACCA-ACTTCTG-AACTTT-T---CAAGCTTTTACGAGTTCTTTTAT
243 CATCAT-TTGG-T-CT--A-AATAGTT-TGTCATTTTGTAAACAAG-TTTT--G-G-TC-TTT-G
**** ** *** * * * *
20252378 AACTT-GTTCCTTACAATATT-CAAGACG-ATCCATTC-CTTCGAGCAATTTTCTGAAC-ATTCC
294 AA-TTAAAAACTT---AT-TTACGTGA-GAATTGTTTCTCTTTG-G---TTCT-TGGACGA--AC
* * * * * ** * *
20252438 ATGCTCAGGAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTATGTAAACAACTTTTGG-TCC
346 -T--TC-TGAACTTGTCA-AACTT--T-T-ACGAG--T-TC-TT-T-T--ATAAC-TTCGGTTCC
* * * *
20252501 TT---GAATT-AAGTAC--T-TATT--TACGAGGGAAT
393 TTAAAGTATTCAAG-ACGATCCATTCCTTCGA-GCAAT
* * * * * *** * *
20252530 TGTTTC--AC-TTTTGGTTCTGGGACAAACTTCCGAACTT-GTC-AAACT--TTT-ACGAGTTCT
1 T-TTTCGAACATTCT-ATTCTCGGA-AATC-GCATCATTTGGTCTAAA-TAGTTTGTC-A-TT-T
*** * * * * * * * * *
20252587 T-T-TTTAA-TTTCAGTTCCATAAAGTATTCAAGAC-GATCCATTCCTTCGAGCAATT-TTTCGA
58 TGTAAACAAGTTT-TGGT-CTTTAA--ATTAAAAACTTAT---TTACGT-GAG-AATTGTTTC--
* ** * * * * * * *
20252647 ACATTCCATGGTCGGA--AA-AT-CGCATCATTTGGTCTAAA-TAGTTTGTC-A-TT-TTGTAAA
112 TC-TT-GGTTGTTGGACGAACTTCCG-AAC-TTT--TC-AAACT--TTT-ACGAGTTCTT-TTAT
* * * * * * * * * * **
20252704 AAGGTT-TGTT-GTT--TGAATTAAAAAC--T-TATTTACGT-GAG-AATTGTTTCT-CTC-TT-
166 AA-CTTCGGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAA-T-TTTCTGAACATTC
** * * * * * * * * *
20252757 GGTTCT-TGG--A-CG-AACTTTTGACAAGTC-AAACT--TTTATGAGTTCTT-T-CATAA-CTT
227 CATGCTCGGGAAATCGCATCATTTG----GTCTAAA-TAGTTTGTCA-TT-TTGTAAACAAGTTT
* * * * * * * * * ** * *
20252811 CGGTTCCTTAATGTATTCAAGAC-GATCATTCCTTCGAGCAATT-TTTGAATATTTTATTATAGG
285 TGG-T-CTT--TGAATTAAAAACTTAT--TTACGT-GAG-AATTGTTT--CTCTTTGGTTCTTGG
* * * *** * ** * * *
20252874 --GAAATAGCAGCTTTTGGTCTAAA-TAGTTTGTC-A-TT-TTGCAAGCAAGTTTTGG-T-CTT-
340 ACGAACT-TCTGAACTT-GTC-AAACT--TTT-ACGAGTTCTT-TTA-TAA-CTTCGGTTCCTTA
* * * * * *
20252930 -TG-AATCAA-A--AACTTATTTAC-GCGAG-AAT
396 AAGTATTCAAGACGATC-CA-TTCCTTCGAGCAAT
* * * ** * *
20252958 TGTTTC--TC-TTCT-TTCTTGGAAGAAC-TTTCGAACTT-GTC--AA-ACTTTG-CGAGTTCTT
1 T-TTTCGAACATTCTATTCTCGGAA-ATCGCATC--ATTTGGTCTAAATAGTTTGTC-A-TT-TT
* ** * * * * * * *
20253013 TTATAAC---TTCGGGTCCTTACAGTATTCAAGACTATACATTCCTTCGAGCAA--CTTTCTAAA
59 GTA-AACAAGTTTTGGTCTTTA-A--ATTAAAAACT-TA-TTTACGT-GAG-AATTGTTTCT---
* ** * * * * *
20253073 AATTCTTTGCTAGG--GAA-ATCGCATAATTTTTCTAAA-TTCTT-C--G-TCATTTTGTAAACA
113 -CTTGGTTG-TTGGACGAACTTC-C-GAACTTTTC-AAACTT-TTACGAGTTC-TTTTAT-AAC-
* * * * * * * ** *
20253130 AGTTTTGG-T-CTTTAA--ATTAAAAAC--T-TATTTACGT-GAG-AATGGTTTCT-CTC-TT-G
169 ---TTCGGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAAT--TTTCTGAACATTCC
* * * * ** * **
20253183 GTTCTTGGACGAACTTCTAAAC-TTT--TAAAACATTCCA-TTCTCGAGAAATCAAATAATTTAG
228 ATGCTCGG--GAA-ATCGCATCATTTGGTCTAA-A-T--AGTT-T---G---TC--AT--TTT-G
* ** **** * ** * * *
20253244 TCTAAA-TAGTTTT--TCATTTTGTAAACAAGTTTTGGTCTTTAAAATGAAAACATATTTACGTG
274 --TAAACAAGTTTTGGTC--TTTG-AATTAAAAACT--TATTT-ACGTGAGAA-TTGTTT-C-T-
** * ***** * * * *
20253306 AGAATTGTTTCTCTTGG-CTGTTGGAC-CAACTTCT-GAACTTTTCAAACTTTTACGAGTTCATT
327 --CTTTG-GT-TCTTGGAC-GAACTTCTGAACTTGTCAAAC-TTT--------TACGAGTTCTTT
* * * *
20253368 TATAACTT-TGTTCCTTACAA-TATCCAAGACGATCCATTCCTTCGAGTAGT
378 TATAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * *
20253418 TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAACAGTTTGCCATTTTGTAAAC
1 TTTTCGAACATTCTATTCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * * * *
20253483 AACTTTTGGTCTCTCAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTCGATGAA
65 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACGAA
* *
20253548 CTTTCGAACTTCTCAAACTTTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
130 CTTCCGAACTTTTCAAAC--TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * *
20253613 CGATCCATTCCTTTGAGTAATTTT-TGAACATTCCATTCTCGGGAAATCGCATTATTTAGTCTAA
193 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * ***
20253677 ATA-TTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACGAAAACTTATTTACGTGAGAATTGT
258 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * *
20253741 TTCTC-TTGGCTGTTGGACAAACTT-TCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-
323 TTCTCTTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * *
20253803 GGTACCTTATAGTATTCAAGACGATCCATTCATTTGAGCAAT
387 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * *
20253845 TTTTCGAACATT-TCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTCGTAAA
1 TTTTCGAACATTCT-ATTCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * ** * * * * *
20253909 GAACTTTTGGTCCCTGAATTAAATACTTATTTATGTGAGAATTGTTTCGCATCTAGTT-TTGGGA
64 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-T-TGGTTGTT-GGA
* * * * *
20253973 CGAACTTCCAAACTTGTCAAACTTTTATGAGTTCTTTTATAATTTCAGTT-CTATAAAGTATTCA
126 CGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCA
* *
20254037 AGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCTTGCTCGGGAAATCGCATCATTTGGTC
190 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * * * *
20254102 TAAATAGTTTGTCATTTTGTACAA-AGGTATTGTTGC-TTGAATTAAAAACTTATATATGTGAGA
255 TAAATAGTTTGTCATTTTGTA-AACAAGTTTTGGT-CTTTGAATTAAAAACTTATTTACGTGAGA
* * * * * *
20254165 ATTGTTTCTCTCTTGGTTCTTCGATGAACTT-TCGAACTAGTTAAAATTTTACGAGTTCTTTCAT
318 ATTGTTTCTCT-TTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTAT
* *
20254229 AGCTTCGGTTCC-TAAATGTATTCAAGACGATCCATTTCTTCGAGCAAAT
381 AACTTCGGTTCCTTAAA-GTATTCAAGACGATCCATTCCTTCGAGC-AAT
* * * *
20254278 TTTT-GAACATTCTATTCTCGGGAAATAGCAACATTTGGTCTAAATAGTTTGCCATTTTGCAAAC
1 TTTTCGAACATTCTATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* ** * *
20254342 AAGTTTTGGTCTTTGAATCGAAAACTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGACGAA
65 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACGAA
* * * *
20254407 CTTCCGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACG
130 CTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * * * ** * * *
20254472 ATACATTCCTACGAGCAACTTTCTAAATATTCTATGCTCGAAAAATGGTATCATTT-TTCTAAAT
195 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * *
20254536 TGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACATGAAAATTGTTT
260 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * * *
20254601 CTCGCTTGGTTCTTGGACGAACTTAT-ACACTTTTTAAACTTTAACGAGTTCTTTTATAACTTTG
325 CTC-TTTGGTTCTTGGACGAACTTCTGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * **
20254665 GCTCCTTAAAATATTCAAGATGATCCATTCCTTTAAGCAAT
388 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* ** * * * * *
20254706 TTTT-GAAAATTCCCTTCTCGGGAAATCACATCAATTAGTCTAAATAGTTTTTCATTTTGTAAAT
1 TTTTCGAACATTCTATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * *
20254770 AAGTTTT-GTCCTTGAAGA-CAAAAACTTATCTATGTGAGAATTGTTTCTCTTGGCTGTTGGACG
65 AAGTTTTGGT-CTTTAA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACG
** ** * *
20254833 AACTTCTAAACTTTTCATTCTTTTAAGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA
128 AACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * *
20254897 CAATCCATTCCTTCGAGTAA-TTT-TGAAACATTCCAGGCTCGAGAAATCGCATCATTTGGTCTA
193 CGATCCATTCCTTCGAGCAATTTTCTG-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
** * *
20254960 AATAGTTTGTCATTTTGTAAA-AAGGTTTTATTGTTTGAAATAAAAACTTATTTACGTGAGAATT
257 AATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * *
20255024 GTTTCTCTCTTGGTTCTTCGACGAACTT-TCGAACTAGTCAAACTTTTACGAGTTCTTTCATAAC
321 GTTTCTCT-TTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* *
20255088 TTCGGTTCCTTAAAGTATTCGAGACGATCCATTCCTTCAAGCAA-
384 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * * * * *
20255132 TTTTCTGAAAATTCTATTCCTGGGAAATTGCAGCATTTAGTCTAAATTGTTTTTTCATTTTGGAA
1 TTTTC-GAACATTCTATT-CTCGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAA
* * * * ** ** *
20255197 ACAAATTTTGGTCTTTGAATCAAAAACTTATTTATGTGAGAATTGTTTCTCACGGTCCTTGGACA
63 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACG
** * *
20255262 AACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGA
128 AACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
** * * * * * * ** * *
20255327 TAATGCATTCCTTCGAGCAACTTTCTAAACATTCTACGCTAGAAAAATGGCATCATTT-TTCTAA
193 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * *
20255391 ATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTAT
258 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* ** * * * * *
20255456 TTCTCTCTCTCGATTCTTGGACGAACTTCCAAACTTTTGAAACTTTTATGAGTTCTCTTACAACT
323 TTCTCT-T-T-GGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
*
20255521 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAT
385 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * *
20255565 TTTT-GAACATTCAATTCTCGAGAAATCGCATCATTTAGTCTAACTAGTTTCTCA-TTTGTAAAC
1 TTTTCGAACATTCTATTCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
*** * *
20255628 AAGTTTTGGTCTTTAAAACGAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTGTTGGACGAA
65 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACGAA
* * * *
20255693 CTTCTGAACTTTTCAAACTTTTA--ATGTTCTTTTATAACTT-AGTTCTTTATAGTATTCAAGAC
130 CTTCCGAACTTTTCAAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* * ** * *
20255755 GATCTATTCCTTCGAGCTATTTTCCAAACATTCCATTCTCGGGAAATCGCATCATTT-ATCTAAA
194 GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * *
20255819 TTGTTTGTCATTTTGTAAACAAGTTCTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTT
259 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * * * * * *
20255884 TCTC-TTGGGTATTGGACAAACTT-TCGAACTTTTCAAACTTTTATGGGTTCTTTCAGAACTTCG
324 TCTCTTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * **
20255947 GTTCCTTAATGTATTCAAAACAATCCATTTTTTCGAGCAAT
388 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * *
20255988 TTTTTGAACATTCTATTCTCGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGAAAACA
1 TTTTCGAACATTCTATTCTCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * *
20256053 AGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
66 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACGAAC
* *
20256118 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAA-TATTCTAGACG
131 TTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACG
* * * * ** *
20256182 ATACATTCCTTCGAGCAACTTTCTAAATATTATATGCTCAGGAAATCGCATCATTT--TCTAAAT
195 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* ** * * *
20256245 TGTTTGTCATTTAATAAACAAGTTTTGGTC-CTGAAATTTAAAACTTATTTACATGAGAATTGTT
260 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG-AATTAAAAACTTATTTACGTGAGAATTG-T
* ** *
20256309 TCTCTCTCTTGGTTCTTGGACGTACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT
323 T-TCTCT-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * *
20256374 AGGTTTCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAAT
386 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * *
20256417 TTTTCAAACATTCAATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-
1 TTTTCGAACATTCTATTC-TCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * *
20256481 AGGTTTTGTTGTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
65 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTGTTGGACG
* ** * *
20256546 AACTTTCGAACTAGTCAAAC-TTTACGAGTTCTTTCATAACTTCGGTTCCTTAATGTATTCAAGA
128 AACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * * *
20256610 CGATCCATTCCATCGAGCAATTTTCTGAACATTCTATTCTTGGGAAATAGTAGCATTTGGTCTAA
193 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * *
20256675 ATAGTTTGTCATTTTGGAAACAAGTTTTGGT-TTTCTAATCAAAAACTTATTTAC---------G
258 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTG
* * * * * *
20256730 -TTCT-GTTGGTTCTTGGACGAACTTCCGAACTTATCAAACTTTTACAAGTTCTTTTAAAACTTT
322 TTTCTCTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
*
20256793 TGTTCC-T--A--A--C---A-G-T--ATTCCTTCGAGCAA-
387 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * * * *
20256820 CTTTCTAAAAATTCTATGCTCGAAAAATCGCATCATTT-ATCTAAATTGTTTGTCATTTTCG-AA
1 TTTTC-GAACATTCTATTCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-GTAA
* *
20256883 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGTTCTTGGACG
63 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACG
* * * *
20256948 AACTTCCAAACTTCTCAAACTTTTCCGAGTTCTTTTATAACTTCAGTTCCTTAAAAGTATTCAAG
128 AACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAG
* ** *
20257013 ACGATCCATTCCTTTGAGCAATTTT-TGAACATTCCATTATCGGGAAATCGCATCATTTAGTCTA
192 ACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
* * * ** *
20257077 AATAGTTTTTAATTTTGTAAA-AAGTTTTGGTCTTTAAAACAAAAACTTATATACGTGAGAATTG
257 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* * * ** * *
20257141 TTTCTC-TTGGCTGTAGGACGAACTTCCAAACTTTTCAAAATTTTACGAGTTCTTTTATAACTT-
322 TTTCTCTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
*
20257204 GGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAAT
387 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
*
20257246 TTTACGAACATTC
1 TTTTCGAACATTC
20257259 CATGCTTTGA
Statistics
Matches: 6397, Mismatches: 1237, Indels: 1017
0.74 0.14 0.12
Matches are distributed among these distances:
394 53 0.01
396 80 0.01
397 33 0.01
398 30 0.00
399 32 0.01
401 60 0.01
402 61 0.01
403 111 0.02
404 116 0.02
405 27 0.00
406 1 0.00
407 2 0.00
408 1 0.00
411 7 0.00
412 54 0.01
413 1 0.00
414 1 0.00
415 1 0.00
416 1 0.00
417 49 0.01
418 322 0.05
419 58 0.01
420 4 0.00
421 6 0.00
422 20 0.00
423 118 0.02
424 124 0.02
425 281 0.04
426 497 0.08
427 923 0.14
428 525 0.08
429 732 0.11
430 548 0.09
431 504 0.08
432 367 0.06
433 32 0.01
434 13 0.00
435 13 0.00
436 9 0.00
437 8 0.00
438 6 0.00
439 5 0.00
440 18 0.00
441 8 0.00
442 12 0.00
443 18 0.00
444 20 0.00
445 20 0.00
446 25 0.00
447 16 0.00
448 15 0.00
449 16 0.00
450 10 0.00
451 6 0.00
452 2 0.00
453 11 0.00
454 22 0.00
455 27 0.00
456 30 0.00
457 27 0.00
458 34 0.01
459 21 0.00
460 33 0.01
461 30 0.00
462 36 0.01
463 37 0.01
464 32 0.01
465 13 0.00
466 14 0.00
467 4 0.00
468 3 0.00
469 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (428 bp):
TTTTCGAACATTCTATTCTCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
AGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACGAAC
TTCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
TCTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
Found at i:20251958 original size:183 final size:190
Alignment explanation
Indices: 20251638--20252173 Score: 516
Period size: 210 Copynumber: 2.7 Consensus size: 190
20251628 ATAACTTCAT
* * * * * * * * *
20251638 TTCCTTA-ATGTATTCAAGACGATCCGTTCCTTCAAGCAATTTTCTAAACATTCTGTTCTCGGGA
1 TTCCTTACA-GTATTCAAGACGATACATTCCTTCGAGCAACTTCCTAAAAATTCTATGCTAGGGA
* ** ** * * *
20251702 AATTGCAGCATTTGGTCTAAATAGTTTGGCATTTTGGAAACTAGTTTTGATCTTTGAATCAAAAA
65 AATCGCATAATTT--TCTAAATTCTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAA
*
20251767 CTTATTTACGTGA-G-CA-TGGTTCTTGGATGAA-TTTCTGAACTTGTCAAACTTTT-GAG-A-G
128 CTTATTTACGTGATGTCACTGGTTCTTGGACGAACTTT-TGAACTTGTCAAA-TTTTAGAGTACG
20251825 TT-CTTACAGTATTCAAGACGATACATTCCTTCGAGCAACTTCCTAAAAATTCTATGCTAGGGAA
1 TTCCTTACAGTATTCAAGACGATACATTCCTTCGAGCAACTTCCTAAAAATTCTATGCTAGGGAA
* * *
20251889 ATCTCATAATTTTCTAAATT-TTTTTCATTTTGGAAACAAGTTTTGGTCATTGAATCAAAAACTT
66 ATCGCATAATTTTCTAAATTCTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTT
20251953 ATTTACGTGATAATTGTTTCACTTGGTTCTTGGACGAACTTTTGAACTTGTCAAATTTTACGAGT
131 ATTTACGTG---A-TG--TCAC-TGGTTCTTGGACGAACTTTTGAACTTGTCAAATTTTA-GAG-
20252018 TCATTTATAACTTCGG
187 -------T-A---C-G
* * * *
20252034 TTCCTTACAGTATTCAAGACTATACATTCCTTTGAGCAACTTTCTAAAAATTGTATGCTAGGGAA
1 TTCCTTACAGTATTCAAGACGATACATTCCTTCGAGCAACTTCCTAAAAATTCTATGCTAGGGAA
* * *
20252099 ATCGCATAATTTTCTAAATTCTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTT
66 ATCGCATAATTTTCTAAATTCTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTT
20252164 ATTTACGTGA
131 ATTTACGTGA
20252174 AAATTGTTTC
Statistics
Matches: 288, Mismatches: 30, Indels: 41
0.80 0.08 0.11
Matches are distributed among these distances:
183 48 0.17
184 7 0.02
186 60 0.21
187 3 0.01
188 1 0.00
191 2 0.01
192 4 0.01
193 27 0.09
194 6 0.02
204 1 0.00
208 1 0.00
209 3 0.01
210 77 0.27
211 48 0.17
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (190 bp):
TTCCTTACAGTATTCAAGACGATACATTCCTTCGAGCAACTTCCTAAAAATTCTATGCTAGGGAA
ATCGCATAATTTTCTAAATTCTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTT
ATTTACGTGATGTCACTGGTTCTTGGACGAACTTTTGAACTTGTCAAATTTTAGAGTACG
Found at i:20253002 original size:212 final size:214
Alignment explanation
Indices: 20252212--20253198 Score: 1070
Period size: 212 Copynumber: 4.6 Consensus size: 214
20252202 ACTTCCAAAC
* * * ** * * *
20252212 TTTTTAAACATTCCATTCTCGGGAAATTACATCATTTAGTCTAAATAGTTTTTCACTTTGTAAAC
1 TTTTTGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * * **
20252277 AAGTTTTGGTCTTTAGAA-TGAAAATTTATTTACGTGAGAATTGTTTCTCTT-GGCTGTTGGACC
66 AAGTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTCTGTTCTTGGAAG
* * *
20252340 AAC-TTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATAACTT--GTTCCTTACAATATTCAAG
130 AACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
20252402 ACGATCCATTCCTTCGAGCAA
194 ACGATCCATTCCTTCGAGCAA
*
20252423 TTTTCTGAACATTCCATGCTCA-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTATGTAA
1 TTTT-TGAACATTCCATGCT-AGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * ** * * * * *
20252487 ACAACTTTTGGTCCTTGAATTAAGTACTTATTTACGAGGGAATTGTTTCACTTTTGGTTCTGGGA
64 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTCT-GTTCTTGGA
* * * * * *
20252552 CA-AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAATTTCAGTTCCATAAAGTATTCA
128 -AGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCA
20252616 AGACGATCCATTCCTTCGAGCAA
192 AGACGATCCATTCCTTCGAGCAA
* * *
20252639 TTTTTCGAACATTCCATGGTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
1 TTTTT-GAACATTCCATGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20252704 -AAGGTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-TCTTGGTTCTTGGA
65 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTC-T-GTTCTTGGA
* * ** * *
20252767 CGAACTTTTG-ACAAGTCAAACTTTTATGAGTTCTTTCATAACTTCGGTTCCTTA-ATGTATTCA
128 AGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACA-GTATTCA
20252830 AGACGAT-CATTCCTTCGAGCAA
192 AGACGATCCATTCCTTCGAGCAA
* ** ** * * * * *
20252852 TTTTTGAATATTTTATTATAGGGAAATAGCAGCTTTTGGTCTAAATAGTTTGTCATTTTGCAAGC
1 TTTTTGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* *
20252917 AAGTTTTGGTCTTTGAATCAAAAACTTATTTACGCGAGAATTGTTTCTCTTCT-TTCTTGGAAGA
66 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTCTGTTCTTGGAAGA
* *
20252981 ACTTTCGAACTTGTCAAAC-TTTGCGAGTTCTTTTATAACTTCGGGTCCTTACAGTATTCAAGAC
131 ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
* *
20253045 TATACATTCCTTCGAGCAA
196 GATCCATTCCTTCGAGCAA
* * * ** * * ** *
20253064 CTTTCTAAAAATTCTTTGCTAGGGAAATCGCATAATTT-TTCTAAATTCTTCGTCATTTTGTAAA
1 -TTTTTGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
20253128 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATGGTTTCTC-TCTTGGTTCTTGGA
65 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTC-T-GTTCTTGGA
*
20253192 CGAACTT
128 AGAACTT
20253199 CTAAACTTTT
Statistics
Matches: 647, Mismatches: 106, Indels: 43
0.81 0.13 0.05
Matches are distributed among these distances:
211 66 0.10
212 228 0.35
213 92 0.14
214 108 0.17
215 58 0.09
216 95 0.15
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.41
Consensus pattern (214 bp):
TTTTTGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTCTGTTCTTGGAAGA
ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
GATCCATTCCTTCGAGCAA
Found at i:20253164 original size:425 final size:429
Alignment explanation
Indices: 20252245--20253200 Score: 1139
Period size: 428 Copynumber: 2.2 Consensus size: 429
20252235 AAATTACATC
* * ** * * *
20252245 ATTTAGTCTAAATAGTTTTTCACTTTGTAAACAAGTTTTGGTCTTTAGAA-TGAAAATTTATTTA
1 ATTTGGTCTAAATACTTCGTCATTTTGTAAACAAGTTTTGGTCTTTA-AATTAAAAACTTATTTA
* * * *** *
20252309 CGTGAGAATTG-TT-TCTCTTGGCTGTTGGACCAACTTCTGAACTTTTCAAGCTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACAAGTCAAACTTTTACGAGTTC
*
20252372 TTTTATAACTTGTTCCTTACAATATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTC
130 TTTCATAACTTGTTCCTTACAATATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTC
* * * *
20252437 CATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTATGTAAACAACTTTTGGTCCT
195 CATGATCAGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTATGCAAACAACTTTTGGTCCT
* ** * *
20252502 TGAATTAAGTACTTATTTACGAGGGAATTGTTTCACTTTTGGTTCTGGGACAAACTTCCGAACTT
260 TGAATCAAAAACTTATTTACGAGAGAATTGTTTCACTTCT-GTTCTGGGACAAACTTCCGAACTT
* * * *
20252567 GTCAAACTTTTACGAGTTCTTTTTTAATTTCAGTTCCATAAAGTATTCAAGACGATCCATTCCTT
324 GTCAAACTTTTACGAGTTCTTTTATAACTTCAGGTCCATAAAGTATTCAAGACGATACATTCCTT
* * * * * *
20252632 CGAGCAATTTTTCGAACATTCCATGGTCGGAAAATCGCATC
389 CGAGCAATTTCTCAAAAATTCCATGCTAGGAAAATCGCATA
* * * * * *
20252673 ATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTGTTGTTTGAATTAAAAACTTATTTAC
1 ATTTGGTCTAAATACTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTAC
* *
20252737 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTG-ACAAGTCAAACTTTTATGAGTTCT
66 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACAAGTCAAACTTTTACGAGTTCT
* *
20252801 TTCATAACTTCGGTTCCTTA-ATGTATTCAAGACGAT-CATTCCTTCGAGCAATTTT-TGAATAT
131 TTCATAACTT--GTTCCTTACA-ATATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACAT
** * * * * *
20252863 TTTATTAT-AGGGAAATAGCAGCTTTTGGTCTAAATAGTTTGTCATTTTGCAAGCAAGTTTTGGT
193 TCCATGATCA-GGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTATGCAAACAACTTTTGGT
* * * * *
20252927 CTTTGAATCAAAAACTTATTTACGCGAGAATTGTTTCTCTTCT-TTCTTGGA-AGAACTTTCGAA
257 CCTTGAATCAAAAACTTATTTACGAGAGAATTGTTTCACTTCTGTTCTGGGACA-AACTTCCGAA
* * * * *
20252990 CTTGTCAAAC-TTTGCGAGTTCTTTTATAACTTCGGGTCCTTACAGTATTCAAGACTATACATTC
321 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGGTCCATAAAGTATTCAAGACGATACATTC
** *
20253054 CTTCGAGCAACTTTCT-AAAAATTCTTTGCTAGGGAAATCGCATA
386 CTTCGAGCAA-TTTCTCAAAAATTCCATGCTAGGAAAATCGCATA
* *
20253098 ATTT-TTCTAAATTCTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTAC
1 ATTTGGTCTAAATACTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTAC
*
20253162 GTGAGAATGGTTTCTCTCTTGGTTCTTGGACGAACTTCT
66 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT
20253201 AAACTTTTAA
Statistics
Matches: 448, Mismatches: 70, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
424 22 0.05
425 146 0.33
426 32 0.07
427 35 0.08
428 150 0.33
429 42 0.09
430 21 0.05
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.41
Consensus pattern (429 bp):
ATTTGGTCTAAATACTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTAC
GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACAAGTCAAACTTTTACGAGTTCT
TTCATAACTTGTTCCTTACAATATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
ATGATCAGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTATGCAAACAACTTTTGGTCCTT
GAATCAAAAACTTATTTACGAGAGAATTGTTTCACTTCTGTTCTGGGACAAACTTCCGAACTTGT
CAAACTTTTACGAGTTCTTTTATAACTTCAGGTCCATAAAGTATTCAAGACGATACATTCCTTCG
AGCAATTTCTCAAAAATTCCATGCTAGGAAAATCGCATA
Found at i:20255292 original size:857 final size:852
Alignment explanation
Indices: 20248719--20257248 Score: 5447
Period size: 857 Copynumber: 10.0 Consensus size: 852
20248709 CAGGAAGTCA
* * * * ** *
20248719 CATCATTTAGTTTAAATAGTTTTTCACTTTGTAAACAAGTTTTGGT-CTTTAGAATGAAAATTTA
1 CATCATTTAGTCTAAATAGTTTGTCATTTTGTAAA-AAGTTTTGGTCCTTGA-AACAAAAACTTA
* * * * *
20248783 TTTACGTGAGAATTGTTTCTCTTGGTTGTTGGACCAACTTCTGAACTTTTCAAACTTTTACGAGT
64 TTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCTAAACTTGTCAAACTTTTAAGAGT
* * * *
20248848 TCTTTTATAACTT-TGTTCCTTACAATATTCAAGATGATCCATTCCTTCGAGCAATTTTT-AAAT
129 TCTTTTATAACTTCAGTTCCTTA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAAAC
* * *
20248911 ATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTGG
193 ATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * ** * * * * * ** *
20248975 TCCTTGAATTAAGTACTTATTTACGTGGGAACTCTTTCGCTTTTGGTTCTGGGATAAACTTTCAA
258 TCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTT--CTCTTGGTTCTTGGACGAACTTTCGA
* * * * * *
20249040 ACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCGAGACGATCCATT
321 ACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* ** * * *
20249105 CCTTCGAGCAAATTTTTGAACATTCCATGGTCGGGAAATCGCATCATTTGGTCTAAATAATTTGT
386 CCTTCGAGC-AATTTTTGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGT
* ** * * * *
20249170 TATTTTATAAAAAAGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
450 CATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTT
* * * * *
20249235 GGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTCATAACTTCGATTCTTTA
513 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTA
* * * * * ** * * *
20249300 ATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAATA-TCTATTATCGGGAAATAGCAG
578 AAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAGAAATCGCAT
** * * * *
20249364 C-TTTTGGTAGTAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTT
643 CATTTTTCTA--AATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTT
* * * * **
20249428 ACGTGAGAATTGTTTCT-ATTGGTTCTTTGAAGAACTTCCGAACTAGTCAAACTTTTACGAGTTC
706 ACGTGAGAATTGTTTCTCCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTC
* * * *
20249492 TTTTAGAACTTCGGTTCCTTACAA-TATTCAAGACGATCCATTCCTTTGATCAATTTTTGAACAT
771 TTTTATAACTTTGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAAAAT
* * *
20249556 TCCATTCTCGGGAAATCG
835 TCAATGCTCGAGAAATCG
* * *
20249574 CATCATTTAGTCTAAATAGTTTTTCATTTTGTAAATAAGTTTTGGTCTTTAAAACAAAAACTTAT
1 CATCATTTAGTCTAAATAGTTTGTCATTTTGTAAA-AAGTTTTGGTCCTTGAAACAAAAACTTAT
* *
20249639 TTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAA---CT----TT-TCAAAGTTTTACGAGTT
65 TTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCTAAACTTGTCAAACTTTTAAGAGTT
* * * **
20249696 CTTTTATAACTT-TGTTCCTTACAGTATTCAAGATGATCCATTCCCTT-GAGCAATTCTCCAAAC
130 CTTTTATAACTTCAGTTCCTTA-AGTATTCAAGACGATCCATT-CCTTCGAGCAATTTTTGAAAC
* * * * *
20249759 ATTTCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
193 ATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
*
20249824 TCTTT-AAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAA-TTTCTGA
258 TCTTTGAAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTC-GA
* * * * *
20249887 ACTTGTCAAACTGTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATT
321 ACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * * * * ** * *
20249952 CCTTCGAGCACTTTTCTAAATATTATATGCTCGGGAAATCGCCTCATTT-TTCTAAATTGTTTGT
386 CCTTCGAGCAATTTT-TGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGT
** * * * * *
20250016 CATTTTATAAACAAGTTTTGGTCCTTAAATTAAGAACTTATTTTCGTGAGAATTGTTCCTCTCTC
450 CATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG-T--T-TCTC
* * ** *
20250081 TTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTATTAGTTCTTTTATAACTTCGGTTCCT
511 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCT
* * * * * * * *
20250146 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCAAAGATTCCATGCTTGGGAAATCTC
576 TAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAGAAATCGC
* * * * * * *
20250211 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTATATATTTATT
641 ATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATT
* * * ** *
20250276 TATGTGAGAATTGTTTCTCTTTTGGTTC-TGGATGAACTTCTGAACTTGTCAAACTTTTACGAGT
705 TACGTGAGAATTGTTTCTC-CTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGT
* * * * *
20250340 TCTTTTATAA-TTTCAGTTCCATAAAGTATTCCAGAAGATCCATTCCTTCGAGCAATTTTTCGAA
769 TCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTT-GAA
* * *
20250404 CATTCTATTCTCG-GAAATCG
832 AATTCAATGCTCGAGAAATCG
* *
20250424 CATCATTTAGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGGTCTTTAAAACGAAAAA-TT-
1 CATCATTTAGTCTAAATAGTTTGTCATTTTGTAAA-AAGTTTTGGTCCTTGAAAC-AAAAACTTA
* * * * * * *
20250486 TTGTACGTGAGAATTGTTTCTCTTGGCTGTAGCATGAACTTCCAAACTTTTTAAACTTTTACGAG
64 TT-TACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCTAAACTTGTCAAACTTTTAAGAG
* * * *
20250551 TTCTTTTATAACTT-GGTTCCTTGCAGTATTCATGACGATCCAATCCTTCGAGCAATTTTCTG-A
128 TTCTTTTATAACTTCAGTTCCTT-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAA
* * * *
20250614 ACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAACTTT
191 ACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC-AAGTTT
* ** * *
20250679 TGGTCTTTGAATTAAATGCTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGGCGAACTTCCG
255 TGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCG
* * * *
20250744 AACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACAA-TATTCAAGACGATACA
320 AACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCA
* * * ** * ** * * * *
20250808 TTTCTTCGAGCAACTTTCTAAACATTCTATGATAGAAAAATCGCATCATTT-TTCTAAATTGTTT
384 TTCCTTCGAGCAA-TTTTTGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTT
* * * *
20250872 GTCATTTTGTAAACAAGTTTTGGTC-TTAAATTAAAAACTTATTTACGTGA-AATAGTTTCTCTC
448 GTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG-TT-TCTC
* * * * * * *
20250935 TCTTGTTATTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCCTTTATAA-TTTGGTTCC
511 T-TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCC
* * * ** * * * * *
20250999 TTATAGTATTCAAGATGATCCATTCCTTTAAGCAAATTT-TGAACATTCCATTCTCGGGAAATCG
575 TTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAGAAATCG
** * * * * *** *
20251063 CATCATGTAGTCTGAATAGTTTTTCATTTTGTAAATAAGTTTTGGTCTTTAAAACGAAAAGTTAT
640 CATCAT-TTTTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTAT
* * * * *
20251128 CTACGTGAGAATTGTTTCTCC-TGGCTGTTGGACGAACTTTCGAACTTTTCAAACTTTT-CTGAG
704 TTACGTGAGAATTGTTTCTCCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTAC-GAG
* * * * **
20251191 TTCTTTTATAAC-TTGGTTCCTTATAGTATTGAAGATGATCTATT-CTTTCGAGCAAGTTTCCGA
768 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GAGCAA-TTTTTGA
* * *
20251254 ACATTCCATGCTCGGGAAATCG
831 AAATTCAATGCTCGAGAAATCG
* * * * ** *
20251276 TATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCCTTGAATTAAATACTTAT
1 CATCATTTAGTCTAAATAGTTTGTCATTTTGTAAA-AAGTTTTGGTCCTTGAAACAAAAACTTAT
* * * * * * * * *
20251341 TTACGTGGGAACTCTTTCTCTTTTGGTTCTGGGACAAACTT-TCGAACTTGTCAAACTTTTACGA
65 TTACGTGAGAATTGTTTCTC--TTGGCTGTTGGACGAACTTCT-AAACTTGTCAAACTTTTAAGA
* * *
20251405 GTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTTG-
127 GTTCTTTTATAACTTCAGTTCC-TTAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGA
** * *
20251469 AACATTCCATGGTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTTATTTTGTAAA-AAGGTT
190 AACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTT
** * *
20251533 TTATTGTTTGAATTAAAAA-TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
254 TTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTT
* * * ** *
20251597 TTGAACTAGTCAAACATTTATGAGTTCTTTCATAACTTCATTTCCTTAATGTATTCAAGACGATC
317 TCGAACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
* * * * *
20251662 CGTTCCTTCAAGCAATTTTCTAAACATTCTGTTCTCGGGAAATTGCAGCATTTGGTCTAAATAGT
382 CATTCCTTCGAGCAATTTT-TGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGT
* * *
20251727 TTGGCATTTTGGAAACTAGTTTTGATCTTTGAATCAAAAACTTATTTACGT--G-A--G-----C
446 TTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * *
20251782 ATGGTTCTTGGATGAATTTCTGAACTTGTCAAACTTTT--GAG----------A----G-TT-CT
511 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCT
* * * * * *
20251829 TACAGTATTCAAGACGATACATTCCTTCGAGCAACTTCCTAAAAATTCTATGCTAGGGAAATCTC
576 TAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAGAAATCGC
* * * * * *
20251894 AT-AATTTTCTAAATT-TTTTTCATTTTGGAAACAAGTTTTGGTCATTGAATCAAAAACTTATTT
641 ATCATTTTTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTT
* * *** *
20251957 ACGTGATAATTGTTTC-ACTTGGTTCTTGGACGAACTTTTGAACTTGTCAAA-TTTTACGAGTTC
706 ACGTGAGAATTGTTTCTCCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTC
* * * * * * *
20252020 ATTTATAACTTCGGTTCCTTACAGTATTCAAGACTATACATTCCTTTGAGCAACTTTCTAAAAAT
771 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA-TTTTTGAAAAT
** * *
20252085 TGTATGCTAGGGAAATCG
835 TCAATGCTCGAGAAATCG
* ** * *
20252103 CATAATTT--TCTAAATTCTTTGTCATTTTGTAAACAAGTTTTGGT-CTTTAAATTAAAAACTTA
1 CATCATTTAGTCTAAATAGTTTGTCATTTTGTAAA-AAGTTTTGGTCCTTGAAA-CAAAAACTTA
* * * * * * *
20252165 TTTACGTGAAAATTGTTTCTCTCTGGTTCTTGGACAAACTTCCAAACTTTTTAAACATTCCATTC
64 TTTACGTGAGAATTGTTTCTCT-TGGCTGTTGGACGAACTTCTAAACTTGTCAAAC--T---TT-
** * * * * * * * * * * **** * *
20252230 TCGGGAAATTACATCATTTAGTCTAA-AT-AGTT-TTTCACTTTGTAAACAAGTTTTGGTCTTTA
122 T-AAG-AGTT-C-T--TTTA---TAACTTCAGTTCCTTAAGTAT-TCAAGACGATCCATTCCTTC
* * ** * *** * * * ** **
20252292 GAATGAAAATTTATTTACGTGAGA-ATT-GTTTCTCTTGGCTGTTGGACCAACTTCTGAACT-TT
177 G-A-G-CAA--T-TTT---TGAAACATTCCATTCTC-GGGAAATCGCATC-A-TT-TGGTCTAAA
* * * * *
20252354 TCAAGCTTT-TACGAGTTCTTTTATAAC-----TTGTTCCTT-ACAATATTCAAGAC-GATCCAT
229 T--AG-TTTGT-C-A-TT-TTGTA-AACAAGTTTTGGTCTTTGA-AATA---AAAACTTAT---T
* * ** * * * **
20252411 TCCTTCGAGCAA-T-TTTCTGAACATTCCATGCTCAGGAAATCGCATCATTT-GGTCTA---AAT
279 TACGT-GAG-AATTGTTTCT---C-TT-GGTTCT-TGG--A-CG-AAC-TTTCGAACTAGTCAA-
* * ** * * * * *
20252470 AGTTTGT-C-A-TTATGTAAACAACTTTTGG-TCCTT---GAATT-AAGTAC--T-TATT--TAC
330 ACTTT-TACGAGTTCT-TTCATAAC-TTCGGTTCCTTAAAGTATTCAAG-ACGATCCATTCCTTC
* * * * * * * *
20252522 GAGGGAATTGTTT-CAC-TTTTGGTTCT-GGGACAA-ACTTCCGAACTT-GTC-AAACT--TTT-
391 GA-GCAATT-TTTGAACATTCT-ATTCTCGGGA-AATA--GCAGCATTTGGTCTAAA-TAGTTTG
* **** * * ** * * * * *
20252578 ACGAGTTCTT--TTTTAA-TTTCAGTTCCATAAAGT-ATTCAAGAC-GATCCATTCCTTCGAGCA
449 TC-A-TT-TTGGAAACAAGTTT-TGGTCTTTGAA-TCA---AAAACTTAT---TTACGT-GAG-A
* * * * * ** * *
20252638 ATT-TTTCGAACAT--TCCATGGTCGGAAAAT-CGCATCATTTGGTCTAAA-TAGTTTGTC-A-T
501 ATTGTTTC--TCTTGGTTCTTGGAC-GAACTTCCG-A--ACTT-GTC-AAACT--TTT-ACGAGT
* * * * * * * * * * * * *
20252696 T-TTGTAAAAAGGTTTG-TT-GTT--TGAATTAAAAAC-TTA-TTTACGT-GAG-AA-TTGT-T-
555 TCTT-TTATAA-CTTCGATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTT-TCTA
* * ** * * * * * * *
20252749 -TC-TCTCT-TGGTTCTTG-GA-CG-AAC-TTTTGACAAGTCAAACT-TTTATGAGTTCTT-T-C
617 AACAT-TCTAT-GCTCGAGAAATCGCATCATTTT-TC---T-AAATTGTTTGTCA-TT-TTGTAA
* * * * * * * * * * ** *
20252804 ATAA-CTTCGGTTCCTTAATGTATTCAAGAC-GATCATTCCTTCGAGCAATT-TTTGAATATTTT
673 ACAAGTTTTGG-TCTTTAA---ATTAAAAACTTAT--TTACGT-GAG-AATTGTTT--CTCCTTG
* * * * ** * * ** * *
20252866 ATTATAGG--GAAATAGC-AGCTTTTGGTCTAAA-TAGTTTGTC-A-TT-TTGCAAGCAAGTTTT
728 GTTCTTGGACGAACTTCCAAAC-TTT--TC-AAACT--TTT-ACGAGTTCTT-TTA-TAA-CTTT
* * * * * ** *** * * *
20252924 GG-T-CTT--TG-AATCAA-A--AACTTATTTAC-GCGAG-AATTGTTT--CTCTTC-TTTCTTG
783 GGTTCCTTAAAGTATTCAAGACGATC-CA-TTCCTTTGAGCAATT-TTTGAAAATTCAATGC-TC
*
20252976 GAAGAACTTTCG
844 G-AGAA--ATCG
* * * * * **
20252988 -A--ACTT-GTC--AA-ACTTTG-CGAGTTCTT-TTATAACTTCGGGTCCTT-ACAGTATTC-AA
1 CATCATTTAGTCTAAATAGTTTGTC-A-TT-TTGTAAAAAGTTTTGGTCCTTGA-A--A--CAAA
* * * * * *
20253042 GACTATACATTCCTTCGAGCAACTT-TCTAAAAAT-TCTTTGCTAG--GGAAATCGCATAATTTT
58 AACT-TA-TTTACGT-GAG-AA-TTGT-T-----TCTCTTGGCT-GTTGG--A-CG---AA--CT
* * * * * * ** *
20253103 TCTAAATTCTTCGTC--ATTTTGTAAACAAGTT-TTGGTCTTTAAATTAAAAACTTATTTACGTG
103 TCTAAA--CTT-GTCAAACTTT-T-AA-GAGTTCTT--T-TATAACTT---CAGTTCCTTAAGT-
* **** * * * * * *
20253165 A--GAATGGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTTTAAAACATTCCATTCTCGAG
155 ATTCAA--GACGATC-CAT--TCCTT---CG-A--GC--AATTTTTGAAACATTCCATTCTCGGG
** * * * * *
20253228 AAATCAAATAATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAATGAAA
207 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAATAAAA
* * * * **
20253293 ACATATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACCAAC-TTCTGAACTTTTCAAACTTTT
272 ACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTC-GAACTAGTCAAACTTTT
* * * *
20253357 ACGAGTTCATTT-ATAACTT-TGTTCCTTACAA-TATCCAAGACGATCCATTCCTTCGAGTAGTT
336 ACGAGTTC-TTTCATAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * * * * *
20253419 TTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAACAGTTTGCCATTTTGTAAACA
399 TTT-GAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACA
* * * * * * *
20253484 ACTTTTGGTCTCTCAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTCGATGAAC
463 AGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
* * *
20253549 TTTCGAACTTCTCAAACTTTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
528 TTCCGAACTTGTCAAAC--TTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC
* * * * * * * * * *
20253614 GATCCATTCCTTTGAGTAA-TTTTTGAACATTCCATTCTCGGGAAATCGCATTATTTAGTCTAAA
591 GATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAGAAATCGCATCATTT-TTCTAAA
***
20253678 TAT-TTT-TCATTTTGTAAACAAGTTTTGGTCTTTAAAACGAAAACTTATTTACGTGAGAATTGT
655 T-TGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGT
* * * * *
20253741 TTCT-CTTGGCTGTTGGACAAACTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTATAAC-TTG
719 TTCTCCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTTG
* * * *
20253804 GTACCTTATAGTATTCAAGACGATCCATTCATTTGAGCAATTTTTCGAACATTTC-ATGCTCGAG
784 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTT-GAA-AATTCAATGCTCGAG
*
20253868 AAATTG
847 AAATCG
* * * * ** *
20253874 CATCATTTGGTCTAAATAGTTTGTCATTTCGTAAAGAACTTTTGGTCCCTGAATTAAATACTTAT
1 CATCATTTAGTCTAAATAGTTTGTCATTTTGTAAA-AAGTTTTGGTCCTTGAAACAAAAACTTAT
* * * * * *
20253939 TTATGTGAGAATTGTTTCGCATCTAG-TTTTGGGACGAACTTCCAAACTTGTCAAACTTTTATGA
65 TTACGTGAGAATTGTTTCTC-T-TGGCTGTT-GGACGAACTTCTAAACTTGTCAAACTTTTAAGA
*
20254003 GTTCTTTTATAATTTCAGTT-CTATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTG
127 GTTCTTTTATAACTTCAGTTCCT-T-AAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTG
*
20254067 -AACATTCC-TTGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTACAA-AGG
189 AAACATTCCATT-CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAAG
* * * * * * *
20254129 TATTGTTGC-TTGAATTAAAAACTTATATATGTGAGAATTGTTTCTCTCTTGGTTCTTCGATGAA
252 TTTTGGT-CTTTGAAATAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAA
* * *
20254193 CTTTCGAACTAGTTAAAATTTTACGAGTTCTTTCATAGCTTCGGTTCC-TAAATGTATTCAAGAC
314 CTTTCGAACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAA-GTATTCAAGAC
* *
20254257 GATCCATTTCTTCGAGCAAATTTTTGAACATTCTATTCTCGGGAAATAGCAACATTTGGTCTAAA
378 GATCCATTCCTTCGAGC-AATTTTTGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAA
* * * *
20254322 TAGTTTGCCATTTTGCAAACAAGTTTTGGTCTTTGAATCGAAAACTTATTTATGTGAGAATTGTT
442 TAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTT
*
20254387 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGAT
507 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAT
* * * *
20254452 TCCTTATAGTATTCAAGACGATACATTCCTACGAGCAACTTTCTAAATATTCTATGCTCGAAAAA
572 TCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAGAAA
* *
20254517 TGGTATCATTTTTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTT
637 TCGCATCATTTTTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTT
* * ** * * *
20254582 ATTTACATGAAAATTGTTTCTCGCTTGGTTCTTGGACGAACTTATACACTTTTTAAACTTTAACG
702 ATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACG
* * * *
20254647 AGTTCTTTTATAACTTTGGCTCCTTAAAATATTCAAGATGATCCATTCCTTTAAGCAATTTTTGA
766 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTGA
** * * *
20254712 AAATTCCCTTCTCGGGAAATCA
831 AAATTCAATGCTCGAGAAATCG
* *
20254734 CATCAATTAGTCTAAATAGTTTTTCATTTTGTAAATAAGTTTT-GTCCTTGAAGACAAAAACTTA
1 CATCATTTAGTCTAAATAGTTTGTCATTTTGTAAA-AAGTTTTGGTCCTTGAA-ACAAAAACTTA
* * * **
20254798 TCTATGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCTAAACTTTTCATTCTTTTAAGAGT
64 TTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCTAAACTTGTCAAACTTTTAAGAGT
* * *
20254863 TCTTTTATAACTT-GGTTCCTTACAGTATTCAAGACAATCCATTCCTTCGAGTAA-TTTTGAAAC
129 TCTTTTATAACTTCAGTTCCTTA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAAAC
** * *
20254926 ATTCCAGGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTTA
193 ATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTG
* * *
20254990 TTGTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACTTTCG
257 GTCTTTGAAATAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCG
*
20255055 AACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCGAGACGATCCAT
320 AACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * *
20255120 TCCTTCAAGCAATTTTCTGAAAATTCTATTC-CTGGGAAATTGCAGCATTTAGTCTAAATTGTTT
385 TCCTTCGAGCAATTTT-TGAACATTCTATTCTC-GGGAAATAGCAGCATTTGGTCTAAATAG-TT
* * * *
20255184 TTTCATTTTGGAAACAAATTTTGGTCTTTGAATCAAAAACTTATTTATGTGAGAATTGTTTCTCA
447 TGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * *
20255249 CGGTCCTTGGACAAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTT
512 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTT
* ** * * * * *
20255314 ATAGTATTCAAGATAATGCATTCCTTCGAGCAACTTTCTAAACATTCTACGCTAGAAAAATGGCA
577 AAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAGAAATCGCA
20255379 TCATTTTTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTA
642 TCATTTTTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTA
* * * *
20255444 CGTGAGAATTATTTCTCTCTCTCGATTCTTGGACGAACTTCCAAACTTTTGAAACTTTTATGAGT
707 CGTGAGAATTGTTTCTC-CT-T-GGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGT
* * * *
20255509 TCTCTTACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAACA
769 TCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAAAA
*
20255574 TTCAATTCTCGAGAAATCG
834 TTCAATGCTCGAGAAATCG
* * * * *
20255593 CATCATTTAGTCTAACTAGTTTCTCA-TTTGTAAACAAGTTTTGGTCTTTAAAACGAAAACTTAT
1 CATCATTTAGTCTAAATAGTTTGTCATTTTGTAAA-AAGTTTTGGTCCTTGAAACAAAAACTTAT
* * * *
20255657 TTACATGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCTGAACTTTTCAAACTTTTAA-TGTT
65 TTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCTAAACTTGTCAAACTTTTAAGAGTT
* * * **
20255721 CTTTTATAACTT-AGTTCTTTATAGTATTCAAGACGATCTATTCCTTCGAGCTATTTTCCAAACA
130 CTTTTATAACTTCAGTTCCTTA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAAACA
* * *
20255785 TTCCATTCTCGGGAAATCGCATCATTT-ATCTAAATTGTTTGTCATTTTGTAAACAAGTTCTGGT
194 TTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * *
20255849 CTTT-AAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGGTATTGGACAAACTTTCGAAC
259 CTTTGAAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCGAAC
** * * * * * * **
20255913 TTTTCAAACTTTTATGGGTTCTTTCAGAACTTCGGTTCCTTAATGTATTCAAAACAATCCATTTT
323 TAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
20255978 TTCGAGCAATTTTTTGAACATTCTATTCTC-GGAAATAGCAGCATTTGGTCTAAATAGTTTGTCA
388 TTCGAGCAA-TTTTTGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCA
*
20256042 TTTTGAAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTT
452 TTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTT
*
20256107 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAA-
517 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTA-AAG
* * *
20256171 TATTCTAGACGATACATTCCTTCGAGCAACTTTCTAAATATTATATGCTC-AGGAAATCGCATCA
581 TATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGA-GAAATCGCATCA
** * * * *
20256235 -TTTTCTAAATTGTTTGTCATTTAATAAACAAGTTTTGGTCCTGAAATTTAAAACTTATTTACAT
645 TTTTTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGT
*
20256299 GAGAATTGTTTCTCTCTCTTGGTTCTTGGACGTACTTCCAAACTTTTCAAACTTTTACGAGTTCT
710 GAGAATTG-TT-TCTC-CTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCT
* * * * *
20256364 TTTATAACTTAGGTTTCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCAAACATT
772 TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAAA-ATT
* *
20256429 CAATGCTTGGGAAATCG
836 CAATGCTCGAGAAATCG
* * ** * *
20256446 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAGGTTTT-GTTGTTTAAATTAAAAACTTAT
1 CATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAAAGTTTTGGTCCTTGAAA-CAAAAACTTAT
* * * * * *
20256510 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT-TCGAACTAGTCAAAC-TTTACGA
65 TTACGTGAGAATTG-TT-TCTCTTGGCTGTTGGACGAACTTCT-AAACTTGTCAAACTTTTAAGA
* * *
20256573 GTTCTTTCATAACTTCGGTTCCTTAATGTATTCAAGACGATCCATTCCATCGAGCAATTTTCTG-
127 GTTCTTTTATAACTTCAGTTCCTTAA-GTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGA
* * * * * *
20256637 AACATTCTATTCTTGGGAAATAGTAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTT
190 AACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
** * *
20256702 TGGT-TTTCTAATCAAAAACTTATTTAC---------G-TTCTGTTGGTTCTTGGACGAACTTCC
255 TGGTCTTTGAAAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTC
* * * **
20256756 GAACTTA-TCAAACTTTTACAAGTTCTTTTAAAACTTTTGTTCC-T--A--A--C---A-G-T--
319 GAAC-TAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * ** * * * *
20256806 ATTCCTTCGAGCAACTTTCTAAAAATTCTATGCTCGAAAAATCGCATCATTT-ATCTAAATTGTT
383 ATTCCTTCGAGCAA-TTTTTGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTT
* * *
20256870 TGTCATTTTCGAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
447 TGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * *
20256935 TTGTTCTTGGACGAACTTCCAAACTTCTCAAACTTTTCCGAGTTCTTTTATAACTTC-AGTTCCT
512 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCT
* * * * * ** *
20256999 TAAAAGTATTCAAGACGATCCATTCCTTTGAGCAA-TTTTTGAACATTCCATTATCGGGAAATCG
576 T-AAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAGAAATCG
* * * * **
20257063 CATCATTTAGTCTAAATAGTTTTTAATTTTGTAAA-AAGTTTTGGTCTTTAAAACAAAAACTTAT
640 CATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTAT
* * * * *
20257127 ATACGTGAGAATTGTTTCT-CTTGGCTGTAGGACGAACTTCCAAACTTTTCAAAATTTTACGAGT
704 TTACGTGAGAATTGTTTCTCCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGT
* *
20257191 TCTTTTATAAC-TTGGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
769 TCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTT
20257249 ACGAACATTC
Statistics
Matches: 6061, Mismatches: 1138, Indels: 978
0.74 0.14 0.12
Matches are distributed among these distances:
823 1 0.00
824 32 0.01
825 59 0.01
826 20 0.00
827 145 0.02
828 11 0.00
829 79 0.01
830 76 0.01
831 2 0.00
832 6 0.00
833 188 0.03
834 79 0.01
835 25 0.00
836 15 0.00
837 6 0.00
838 1 0.00
839 5 0.00
840 3 0.00
841 3 0.00
842 1 0.00
843 3 0.00
844 13 0.00
845 2 0.00
846 104 0.02
847 236 0.04
848 189 0.03
849 195 0.03
850 132 0.02
851 99 0.02
852 267 0.04
853 387 0.06
854 129 0.02
855 373 0.06
856 602 0.10
857 716 0.12
858 509 0.08
859 331 0.05
860 137 0.02
861 46 0.01
862 6 0.00
863 3 0.00
864 4 0.00
865 6 0.00
866 8 0.00
867 11 0.00
868 6 0.00
869 6 0.00
870 9 0.00
871 4 0.00
872 4 0.00
873 7 0.00
874 4 0.00
875 8 0.00
876 8 0.00
877 5 0.00
878 8 0.00
879 15 0.00
880 43 0.01
881 50 0.01
882 44 0.01
883 49 0.01
884 38 0.01
885 69 0.01
886 43 0.01
887 39 0.01
888 46 0.01
889 54 0.01
890 40 0.01
891 52 0.01
892 35 0.01
893 28 0.00
894 25 0.00
895 13 0.00
896 5 0.00
897 5 0.00
898 15 0.00
899 6 0.00
900 6 0.00
901 4 0.00
902 1 0.00
903 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (852 bp):
CATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAAAGTTTTGGTCCTTGAAACAAAAACTTATT
TACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCTAAACTTGTCAAACTTTTAAGAGTTC
TTTTATAACTTCAGTTCCTTAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAAACATT
CCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
TTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCGAACTAG
TCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
GAGCAATTTTTGAACATTCTATTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTT
GGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTG
GACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTC
AAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCTATGCTCGAGAAATCGCATCATTTTTC
TAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAAT
TGTTTCTCCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACT
TTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAAAATTCAATGCTCGA
GAAATCG
Found at i:20257798 original size:216 final size:214
Alignment explanation
Indices: 20257263--20259680 Score: 2295
Period size: 212 Copynumber: 11.3 Consensus size: 214
20257253 ACATTCCATG
* * *
20257263 CTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACTTTCGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * *
20257328 CTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCTTTAAAGTATTCGAGACAATCCATTC
65 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAGTATTCAAGACGATCCATTC
* * ** * ** * * *
20257393 CTTCGAGCAATTTTCTGAACATTCTATTCTTGGGAAATTACAGCATTTGGTCTAAATTGTTT-TA
129 CTTCGAGCAAATTTCTAAACATTCTACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
*
20257457 ATTTTGGAAACAAGTTTT-GT
194 ATTTTGTAAACAAGTTTTGGT
* * * * *
20257477 TTTTGAATCAAAAACTTATTTAAGTGAGAATTG-TTTCTCTTGGTCCTTGGACAAACTTCCGAAC
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * * * * *
20257541 TTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTACAATAGTCAAGATGATACATTCC
66 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATCCATTCC
* ** * * ** * * *
20257606 TTCGAGTAGCTTTCTAAACATTTTACGGTAGAAAAATTGCATCATTT-TTC-AAATTGTTTGTCA
130 TTCGAGCAAATTTCTAAACATTCTACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
20257669 TTTTGCAAACAAGTTTTGGT
195 TTTTGTAAACAAGTTTTGGT
* *
20257689 CTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-T-TCTCTTGGTTCTTGGACGAACTTCCG
* * * * *
20257754 AACTTTTCAAACTTTTATGAGTTTTTTTATAACTTCGGTTCCTTAAAGTATTCAAAATGATCCAT
63 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAGTATTCAAGACGATCCAT
** * * * * ** * * * * *
20257819 TCCTTTAAAC-AATTTTTGAA-ATTCCATTCTCGGGAAATTGCATCAATTAGTCTAAATAGTTTT
127 TCCTTCGAGCAAATTTCTAAACATTCTACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
20257882 TCATTTTGAAAATAAGTTTTGGT
192 TCATTTTGTAAACAAGTTTTGGT
* *** * ** * * **
20257905 CTTTAAAACGATAACTTATTTATTTGAGAATTG-TTTCTCTTGGCTGTTGGACGAACTTCTAAAC
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * * **
20257969 TTTTCAAACTTTTATGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGATGATCTGTTCC
66 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATCCATTCC
* ** * * * *
20258033 TTCGAGCAATTTTCCGAATATT-TCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC
130 TTCGAGCAAATTTCTAAACATTCT-ACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
*
20258097 ATTTTGTAAACAACTTTTGGT
194 ATTTTGTAAACAAGTTTTGGT
** *
20258118 CTTTGAATTAAATGCTTATTTACGTGAGAATTG-TTTCTCTTGGTTCTTGGACAAACTTCCGAAC
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * *
20258182 TTGTCAAACTTTTACGAGTTTTTTTATAGCTTCGGTTCCTTACAGTATTCAAGACGATACATTCC
66 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATCCATTCC
* * ** * * * *
20258247 TTCGAGCAACTTTCTAAACATTCTACGATAGAAAAATCGCACCATTT-TTCTAAATTGTTTGCCA
130 TTCGAGCAAATTTCTAAACATTCTACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* ** *
20258311 TTTTGTATACATTTTTTAGT
195 TTTTGTAAACAAGTTTTGGT
* * *
20258331 CTTTAAATTAAAAACTTATTTACGTGAAAATAGTTTCTCTCTCTTGGTTCTT-G--G-A----CG
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-T-TCTCTTGGTTCTTGGACGAACTTCCG
*
20258388 AACTT-TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAT
63 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAGTATTCAAGACGATCCAT
** * * * * * ** * * *
20258452 TCCTTTAAGC-AATTTTTGAGCAATCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTT
127 TCCTTCGAGCAAATTTCTAAACATTCTACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
20258516 TCATTTTGTAAATAAG-TTTAGT
192 TCATTTTGTAAACAAGTTTTGGT
* *** * * *
20258538 CTTTAAAACGAAAACTTATGTACGTGAGAATTG-TTTCTCTTGGCTGTTGGACGAACTTCC-AAG
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTCCGAA-
* *
20258601 CTTTTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTATAGTATTCAAGACAATCCATTC
65 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATCCATTC
* * * * * *
20258665 CTTCGAG-TAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
129 CTTCGAGCAAATTTCT-AAACATTCTACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
*
20258729 CATTTTGTAAACAACTTTTGGT
193 CATTTTGTAAACAAGTTTTGGT
* ** * * * * * * *
20258751 CCTTGAATTAAGTACTTATTTACGTGGGAATTATTTCGCTTTTGCTTCTGGGACGAACTTTCGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * *
20258816 CTTGTCAAAATTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCCCTTC
65 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TTAAGTATTCAAGACGATCCATTC
* * * * * * *
20258881 ATTCGAGC-AATTTTTCAAACATTCCATGGTCGGGAAATCACATCATTTGGTCTAAATAGTTTGT
129 CTTCGAGCAAATTTCT-AAACATTCTACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* *
20258945 TATTTTGTAAA-AAGGTTTTGTT
193 CATTTTGTAAACAA-GTTTTGGT
* *
20258967 GTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAACTTCCGAA
* * * * *
20259032 CTAGTCAAACTTTTATGAGTTCTTTCAAAACTTCGGTTCCTTAATGTATTCAAGGCGATCCATTC
65 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-GTATTCAAGACGATCCATTC
* * * * ** * * * *
20259097 CTTCAAGCAATTTTTTGAACATTCT-TTCTCGGGAAATAGCAGCATTTGGTCTGAATAGTTTGTC
129 CTTCGAGCAAATTTCTAAACATTCTACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* *
20259161 A-TTTGGAAACTAGTTTTGGT
194 ATTTTGTAAACAAGTTTTGGT
* * * **
20259181 CTTTGAA-TCAAAACATATTTACGTGAGAATTG-TTTCACTTGGTTCTTGGACGAACTTCTAAAC
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTCCGAAC
* *
20259244 TTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATTCC
66 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATCCATTCC
* * * * * * * * *
20259309 TTCGAGCAACTTCCTAAAAATTCTATGCTAGGGAAATAGTAT-ATTT-TTCTAAATTGTTTTTCA
130 TTCGAGCAAATTTCTAAACATTCTACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
20259372 TTGTGGAAACAAGTTTTGGT
195 TTTTGTAAACAAGTTTTGGT
* * * * * * * * *
20259392 CTTTCAATCAAAAACTTATTTACATGATATTTG-TTTCACTTAGTTGTTGGACGAACCTCCGAAC
1 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTCCGAAC
* *
20259456 TTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACAGTATTCAAGACGATACATTCC
66 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATCCATTCC
* * * * * *
20259521 TTCGAGCAACTTTCTAAACATTGTACGATA-GAAAATCGCATCATTT-TTCTAAATTGTTTGTCA
130 TTCGAGCAAATTTCTAAACATTCTACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
20259584 TTTTGTAAACATGTTTTGGC
195 TTTTGTAAACAAGTTTTGGT
* *
20259604 CTTTAAATTAAAAACTTATTTACGTGA-AAGTAGTTTCTCTTTCTTGGTTCTTGGACGAACTTCC
1 CTTTGAATTAAAAACTTATTTACGTGAGAA-TTGTTT-TC--TCTTGGTTCTTGGACGAACTTCC
* *
20259668 AAACTTTTCAAAC
62 GAACTTGTCAAAC
20259681 ATTCCATTCT
Statistics
Matches: 1822, Mismatches: 326, Indels: 110
0.81 0.14 0.05
Matches are distributed among these distances:
203 11 0.01
204 2 0.00
205 1 0.00
206 1 0.00
207 60 0.03
208 83 0.05
209 8 0.00
210 26 0.01
211 231 0.13
212 502 0.28
213 248 0.14
214 138 0.08
215 98 0.05
216 391 0.21
217 22 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (214 bp):
CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTCCGAAC
TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAGTATTCAAGACGATCCATTCCT
TCGAGCAAATTTCTAAACATTCTACGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
TTTGTAAACAAGTTTTGGT
Found at i:20258695 original size:633 final size:635
Alignment explanation
Indices: 20257273--20259675 Score: 2922
Period size: 633 Copynumber: 3.8 Consensus size: 635
20257263 CTTTGAATTA
* * * * *
20257273 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACTT-TCGAACTAGTCAAA
1 AAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGCTCTTGGACGAACTTCT-AAACTTGTCAAA
* * * *
20257337 CTTTTACGAGTTCTTTCATAACTTCGGTTCTTTAAAGTATTCGAGACAATCCATTCCTTCGAGCA
63 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATCCATTCCTTCGAGCA
* * * * ** * * *
20257402 ATTTTCTGAACATTCTATTCTTGGGAAATTACAGCATTTGGTCTAAATTGTTT-TAATTTTGGAA
128 ATTTCCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGAA
* * * *
20257466 ACAAGTTTT-GTTTTTGAATCAAAAACTTATTTAAGTGAGAATTGTTTCTCTTGGTCCTTGGACA
193 ACAACTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACA
* * * *
20257530 AACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTACAATAGTCAAGA
258 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
* * * * * *
20257595 TGATACATTCCTTCGAGTAGCTTTCTAAACATTTTACGGTAGAAAAATTGCATCATTTTTC-AAA
323 CGATACATTCCTTCGAGCAACTTTCTAAACATTCTACGATAGAAAAATCGCATCATTTTTCTAAA
* * * *
20257659 TTGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTT
388 TTGTTTGTCATTTTGTAAACATGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAATAGTT
*
20257724 TCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTATGAGTTTTTTTATAACTT
453 TCTCTCTCTTGGTTCTTGGACG--------AACTTTTCAAACTTTTATGAGTTCTTTTATAACTT
* *
20257789 CGGTTCCTTAAAGTATTCAAAATGATCCATTCCTTTAAACAATTTTTGA-AATTCCATTCTCGGG
510 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGACAA-TCCATTCTCGGG
* *
20257853 AAATTGCATCAATTAGTCTAAATAGTTTTTCATTTTGAAAATAAGTTTTGGTCTTTAAAACG
574 AAATAGCATCATTTAGTCTAAATAGTTTTTCATTTTGAAAATAAGTTTTGGTCTTTAAAACG
* ** * *
20257915 ATAACTTATTTATTTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCTAAACTTTTCAAACTT
1 AAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTCTTGGACGAACTTCTAAACTTGTCAAACTT
* ** **
20257980 TTATGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGATGATCTGTTCCTTCGAGCAATT
66 TTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATCCATTCCTTCGAGCAA-T
* * * *
20258044 TTCC-GAATATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
130 TTCCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGAAAC
* **
20258108 AACTTTTGGTCTTTGAATTAAATGCTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACAAA
195 AACTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACAAA
* *
20258173 CTTCCGAACTTGTCAAACTTTTACGAGTTTTTTTATAGCTTCGGTTCCTTACAGTATTCAAGACG
260 CTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACG
*
20258238 ATACATTCCTTCGAGCAACTTTCTAAACATTCTACGATAGAAAAATCGCACCATTTTTCTAAATT
325 ATACATTCCTTCGAGCAACTTTCTAAACATTCTACGATAGAAAAATCGCATCATTTTTCTAAATT
* * * *
20258303 GTTTGCCATTTTGTATACATTTTTTAGTCTTTAAATTAAAAACTTATTTACGTGAAAATAGTTTC
390 GTTTGTCATTTTGTAAACATGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAATAGTTTC
*
20258368 TCTCTCTTGGTTCTTGGACGAAC-TTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
455 TCTCTCTTGGTTCTTGGACGAACTTTTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTA
*
20258432 AAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAGCAATCCATTCTCGGGAAATCGCATC
520 AAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGA-CAATCCATTCTCGGGAAATAGCATC
* *
20258497 ATTTAGTCTAAATAGTTTTTCATTTTGTAAATAAG-TTTAGTCTTTAAAACG
584 ATTTAGTCTAAATAGTTTTTCATTTTGAAAATAAGTTTTGGTCTTTAAAACG
* * * * *
20258548 AAAACTTATGTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCCAAGCTTTTCAAACTT
1 AAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTCTTGGACGAACTTCTAAACTTGTCAAACTT
* *
20258613 TTACGAGTTCTTTTATAACTT-GGTTCCTTATAGTATTCAAGACAATCCATTCCTTCGAGTAATT
66 TTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATCCATTCCTTCGAGCAATT
* *
20258677 T-TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
131 TCCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGAAAC
* * ** * * * * * *
20258741 AACTTTTGGTCCTTGAATTAAGTACTTATTTACGTGGGAATTATTTCGCTTTTGCTTCTGGGACG
195 AACTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTT--CTCTTGGTTCTTGGACA
* * * * * *
20258806 AACTTTCGAACTTGTCAAAATTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGA
258 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
* * * * * * * * ** * *
20258871 CGATCCCTTCATTCGAGCAA-TTTTTCAAACATTCCATGGTCGGGAAATCACATCATTTGGTCTA
323 CGATACATTCCTTCGAGCAACTTTCT-AAACATTCTACGATAGAAAAATCGCATCATTT-TTCTA
* * * * * * * * *
20258935 AATAGTTTGTTATTTTGTAAAAAGGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTG
386 AATTGTTTGTCATTTTGTAAACATGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAATAG
* *
20259000 -TT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTCAAAAC
451 TTTCTCTCTCTTGGTTCTTGGACGAAC-TT-----T--TCAAACTTTTATGAGTTCTTTTATAAC
* ** * * *
20259063 TTCGGTTCCTTAATGTATTCAAGGCGATCCATTCCTTCAAGCAATTTTTTGA-ACATTCTTTCTC
508 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAA-TTTTTGACA-ATCCATTCTC
* * * * * * * *
20259127 GGGAAATAGCAGCATTTGGTCTGAATAGTTTGTCATTTGGAAACT-AGTTTTGGTCTTTGAATC-
571 GGGAAATAGCATCATTTAGTCTAAATAGTTTTTCATTTTGAAAATAAGTTTTGGTCTTTAAAACG
* * *
20259190 AAAACATATTTACGTGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTT
1 AAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTCTTGGACGAACTTCTAAACTTGTCAAACTT
* * * *
20259255 TTAAGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCGAGCAACT
66 TTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATCCATTCCTTCGAGCAATT
* * * * * * * * * *
20259320 TCCTAAAAATTCTATGCTAGGGAAATAGTAT-ATTT-TTCTAAATTGTTTTTCATTGTGGAAACA
131 TCCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGAAACA
* * * * * * * * *
20259383 AGTTTTGGTCTTTCAATCAAAAACTTATTTACATGATATTTGTTTCACTTAGTTGTTGGACGAAC
196 ACTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACAAAC
* *
20259448 CTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACAGTATTCAAGACGA
261 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGA
*
20259513 TACATTCCTTCGAGCAACTTTCTAAACATTGTACGATAG-AAAATCGCATCATTTTTCTAAATTG
326 TACATTCCTTCGAGCAACTTTCTAAACATTCTACGATAGAAAAATCGCATCATTTTTCTAAATTG
* *
20259577 TTTGTCATTTTGTAAACATGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAAAGTAGTTTCT
391 TTTGTCATTTTGTAAACATGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAATAGTTTCT
* *
20259642 CTTTCTTGGTTCTTGGACGAAC-TTCCAAACTTTT
456 CTCTCTTGGTTCTTGGACGAACTTTTCAAACTTTT
20259676 CAAACATTCC
Statistics
Matches: 1508, Mismatches: 223, Indels: 72
0.84 0.12 0.04
Matches are distributed among these distances:
630 9 0.01
632 4 0.00
633 303 0.20
634 84 0.06
635 115 0.08
636 57 0.04
637 59 0.04
638 15 0.01
639 188 0.12
640 76 0.05
641 223 0.15
642 186 0.12
643 181 0.12
644 8 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (635 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTCTTGGACGAACTTCTAAACTTGTCAAACTT
TTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATCCATTCCTTCGAGCAATT
TCCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGAAACA
ACTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACAAAC
TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGA
TACATTCCTTCGAGCAACTTTCTAAACATTCTACGATAGAAAAATCGCATCATTTTTCTAAATTG
TTTGTCATTTTGTAAACATGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAATAGTTTCT
CTCTCTTGGTTCTTGGACGAACTTTTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAA
AGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGACAATCCATTCTCGGGAAATAGCATCAT
TTAGTCTAAATAGTTTTTCATTTTGAAAATAAGTTTTGGTCTTTAAAACG
Found at i:20259735 original size:19 final size:21
Alignment explanation
Indices: 20259703--20259743 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
20259693 AGAAATCACA
20259703 TCATTTTGTCTAAAT-AGTTTT
1 TCATTTTG-CTAAATAAGTTTT
20259724 TCATTTTG-TAAATAAGTTTT
1 TCATTTTGCTAAATAAGTTTT
20259744 GGTCTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 6 0.32
21 8 0.42
ACGTcount: A:0.27, C:0.07, G:0.10, T:0.56
Consensus pattern (21 bp):
TCATTTTGCTAAATAAGTTTT
Found at i:20260051 original size:213 final size:213
Alignment explanation
Indices: 20259678--20263654 Score: 4183
Period size: 213 Copynumber: 18.7 Consensus size: 213
20259668 AAACTTTTCA
* * * * * *
20259678 AACATTCCATTCTCGAGAAATCACATCATTTTGTCTAAATAGTTTTTCATTTTGTAAATAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * * * *
20259743 TGGTCTTTAAAATGAAAATTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACCAACTTCTG
66 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCG
* * * *
20259808 AACTTTTCAAACTTTTACGAGTTGTTTTATAACTT-TGTTCCTTACAATATTCAAGACAATCCAT
131 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AATATTCAAGACGATCCAT
*
20259872 TCTTTCGAGCAATTTTCTG
195 TCCTTCGAGCAATTTTCTG
* *
20259891 AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
20259956 TGGTATTTGAATCAAAAACTTATTTACTTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCG
66 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCG
* *
20260021 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAATATTCTAGACGATACAT
131 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AATATTCAAGACGATCCAT
* *
20260086 TCCTTCGAGCAACTTTCTA
195 TCCTTCGAGCAATTTTCTG
* ** ** * * ***
20260105 AATATTATATGCTTAGGAAATCGCATCATTT-TTCTAAATTGTTTGTCATTAAATAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
20260169 TGGTCCTGAAATTTAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGACGTACT
66 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG--T-T-TCTCTTGGTTCTTGGACGAACT
* * * *
20260234 TTCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGAT
127 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA-TATTCAAGACGAT
*
20260299 CCATTCCTTCGAGCAATTTT-TCA
191 CCATTCCTTCGAGCAATTTTCT-G
*
20260322 AACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTT
* * *
20260386 TTGTTGTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
65 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTT
* * * * * *
20260451 TCGATCTAGTCAAACTTTTGCGAGTTCTTTCATAACTTCGGTTCCTTAATGTATTCAAGACGATC
128 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-ATATTCAAGACGATC
20260516 CATTCCTTCGAGCAATTTTCTG
192 CATTCCTTCGAGCAATTTTCTG
* * * * * *
20260538 AACATTCTATTCTCGGGAAATAGTAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
20260603 TGGTTTTTTTAATCAAAAACTTATTTAC---------G-TTCTGTTGGTTCTTGGACGAACTTCC
66 TGG-TCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCC
* * * **
20260658 GAACTTATCAAACTTTTACAAGTTCTTTTAAAACTTTTGTTCC-T--A-A--C---A-G-T--AT
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATATTCAAGACGATCCAT
* *
20260710 TCCTTCGAGCAACTTTCTA
195 TCCTTCGAGCAATTTTCTG
* * ** * *
20260729 AAAATTCTATGCTCGAAAAATCGCATCATTT-ATCTAAATTGTTTGTCATTTTCG-AAACAAGTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTT
*
20260792 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGTTCTTGGACGAACTTCC
65 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCC
* * * *
20260857 AAACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTCAGTTCCTTAAAAGTATTCAAGACGATCC
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAA-TATTCAAGACGATCC
*
20260922 ATTCCTTTGAGCAATTTT-TG
193 ATTCCTTCGAGCAATTTTCTG
** * * * *
20260942 AACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTAATTTTGTAAA-AAGTTC
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
** * * * *
20261006 TGGTCTTTAAAACAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTAGGACGAACTTCCA
66 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCG
* * *
20261071 AACTTTTCAAAATTTTACGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGACGATCCAT
131 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AATATTCAAGACGATCCAT
20261135 TCCTTCGAGCAATTTTAC-G
195 TCCTTCGAGCAATTTT-CTG
** * *
20261154 AACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA-AAGGTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * * *
20261218 TGTTGTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACTTT
66 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTC
* * * * *
20261283 CGAACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCTTTAAAGTATTCGAGACAATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA-TATTCAAGACGATCC
20261348 ATTCCTTCGAGCAATTTTCTG
193 ATTCCTTCGAGCAATTTTCTG
* * ** * * * *
20261369 AACATTCTATTC-CTGGGAAATTACAGCATTTGGTCTAAATTGTTT-TAATTTTGGAAACAAGTT
1 AACATTCCATGCTC-GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * * * *
20261432 TTGGTTTTTGAATCAAAAACTTATTTAAGTGAGAATTGTTTCTCTTGGTCCTTGGACGAACTTCC
65 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCC
* * * * *
20261497 GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTTACAATAGTCAAGATGATACA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AATATTCAAGACGATCCA
* *
20261562 TTCCTTCGAGCAACTTTCTA
194 TTCCTTCGAGCAATTTTCTG
** * * ** * * * *
20261582 AACATT-TTTCGGTAGAAAAATCGCATCATTT-TTC-AAATTGTTAGTCATTTTGCAAACAAGTT
1 AACATTCCAT-GCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
*
20261644 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGACAAAC
65 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG--T-T-TCTCTTGGTTCTTGGACGAAC
* * * * *
20261709 TTCCAAACTTTTCAAACTTTTATGAGTTTTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
126 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA-TATTCAAGACGA
** *
20261774 TCCATTCCTTTAAACAATTTT-TG
190 TCCATTCCTTCGAGCAATTTTCTG
* * * * * * *
20261797 AAAATTCCATTCTCGGGAAATCGCATCAATTAGTTTAAATAGTTTTTCATTTTGTAAATAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
*** * * * * *
20261862 TGGTCTTTAAAACGATAACTAATTTATC-TGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCT
66 TGGTCTTTAAATTAAAAACTTATTTA-CGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCC
* * * * * * * *
20261926 AAAGTTTTCAAACTTTTATGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGATGATTCG
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AATATTCAAGACGATCCA
20261990 TTCCTTCGAGCAATTTT-TCG
194 TTCCTTCGAGCAATTTTCT-G
* * *
20262010 AACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* ** *
20262075 TGGTCTTTGAATTAAATGCTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACAAACTTCCG
66 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCG
* * ** * * * *
20262140 AACTTGTCAAACTTTTACGAGTTTTTTTATAGCTTCGACTCAC-TACAGTATTGAAGATGATACA
131 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC-CTTA-AATATTCAAGACGATCCA
* *
20262204 TTCCTTCGAGCAACTTTCTA
194 TTCCTTCGAGCAATTTTCTG
* * * * ** * * * *
20262224 AACATTCTACGATAGAAAAATCGCACCATTT-TTCTAAATTGTTTGTCATTTTGTAAACATGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * *
20262288 TAGTCTTTAAATTAAAAACATATTTACGTGAAAATAGTTTCTTTCTCTTTGTTCTTGGACGAACT
66 TGGTCTTTAAATTAAAAACTTATTTACGTG-AGA-A--TTGTTTCTCTTGGTTCTTGGACGAACT
* * * *
20262353 TCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGTT
127 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA-TATTCAAGACGAT
**
20262418 CCATTCCTTTAAGCAATTTT-TG
191 CCATTCCTTCGAGCAATTTTCTG
* * * * *
20262440 AGCATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAATAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* **** * * *
20262505 TAGTCTTTAAAACGTAAACTTATCTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTCC-
66 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCG
* *
20262569 AAGCTTTTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTATAGTATTCAAGACGATCCA
131 AA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AATATTCAAGACGATCCA
* *
20262633 TTCCTTCGAGTAATTTTCCG
194 TTCCTTCGAGCAATTTTCTG
* * * *
20262653 AACATTCCATGCCCGGGAAATAGCATCATTTGGTCTAAATAGTTGGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * * * * *
20262718 TGGTCCTTGAATTAAATACTTATTTACGTGGGAATTATTTCGTTTTTGGTTCTGGGACGAACTTT
66 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTC--TCTTGGTTCTTGGACGAACTTC
* * * *
20262783 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGCTCCATAAAGTATTCAAGACGATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA-TATTCAAGACGATCC
* *
20262848 ATTTCTTCGAGCAATTTTTTG
193 ATTCCTTCGAGCAATTTTCTG
* * *
20262869 AACATTCCATGGTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTTATTTTGTAAA-AAGGTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTT
* * *
20262933 TTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
65 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTT
* * * * * * *
20262998 TCGAACTAGTCAAACTTTTATGAGTTCTTTCAAAACTTCGGTTCCTTAATGTATTCAAGGCGATC
128 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-ATATTCAAGACGATC
* *
20263063 CATTCCTTCAAGCAATTTTTTG
192 CATTCCTTCGAGCAATTTTCTG
* * * * * * *
20263085 AACATT-CTTTCTCGGGAAATAGCAGCATTTGGTCTGAATAGTTTGTCATTTTGGAAACTAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * **
20263149 TGGTCTTTGAATCAAAAACATATTTACGTGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCTA
66 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCG
* * *
20263214 AACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACAT
131 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AATATTCAAGACGATCCAT
* * *
20263279 TCCTTCGAGCAACTTCCTA
195 TCCTTCGAGCAATTTTCTG
* * * * * * * * * * *
20263298 AAAATTCTATGCTAGGGAAATAGTATAATTT-TTCTAAATTGTTTTTCATTGTGGAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * * * *
20263362 TGGTCTTTCAATCAAAAACTTATTTACATGATATTTGTTTCACTTAGTTCTTGGACGAACTTCCG
66 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCG
* * *
20263427 AACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACAGTATTCAAGACGATACAT
131 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AATATTCAAGACGATCCAT
* *
20263492 TCCTTCGAGCAACTTTCTT
195 TCCTTCGAGCAATTTTCTG
** * * * * * * * *
20263511 AACATTGTACGAT-AGAAAATCACATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACATGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* *
20263574 TGGCCTTTAAATTAAAAACTTATTTACGTGA-AAGTAGTTTCTCTCTCTTGGTTCTTGGACGAAC
66 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAA-T--TGT-T-TCTCTTGGTTCTTGGACGAAC
* *
20263638 TTCCAAACTTTTCAAAC
126 TTCCGAACTTGTCAAAC
20263655 ACTCCATTCT
Statistics
Matches: 3151, Mismatches: 516, Indels: 191
0.82 0.13 0.05
Matches are distributed among these distances:
189 21 0.01
190 32 0.01
191 44 0.01
193 1 0.00
194 1 0.00
195 1 0.00
198 2 0.00
199 60 0.02
200 2 0.00
203 1 0.00
204 1 0.00
205 57 0.02
206 1 0.00
207 1 0.00
208 1 0.00
210 1 0.00
211 43 0.01
212 297 0.09
213 1103 0.35
214 257 0.08
215 274 0.09
216 538 0.17
217 352 0.11
218 60 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (213 bp):
AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCG
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATATTCAAGACGATCCATT
CCTTCGAGCAATTTTCTG
Found at i:20262458 original size:643 final size:644
Alignment explanation
Indices: 20259695--20263654 Score: 4327
Period size: 643 Copynumber: 6.2 Consensus size: 644
20259685 CATTCTCGAG
* * * * *
20259695 AAATCACATCATTTTGTCTAAATAGTTTTTCATTTTGTAAATAAGTTTTGGTCTTTAAAATGAAA
1 AAATCGCATCATTTT-TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
* * * * * * **
20259760 ATTTATTTACGTG-AGA-A--TTGTTTCTCTTGGCTGTTGGACCAACTTCTGAACTTTTCAAACT
65 ACTTATTTACGTGAAAATAGTTTCTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACT
* * * * *
20259821 TTTACGAGTTGTTTTATAACTT-TGTTCCTTACAA-TATTCAAGACAATCCATTCTTTCGAGCAA
130 TTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCAAGCAA
* * *
20259884 TTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAA
194 TTTTCTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
20259949 CAAGTTTTGGTATTTGAATCAAAAACTTATTTACTTGAGAATTGTTTCTCTTGGTTCTTGGACGA
259 TAAGTTTTGGTCTTTGAATCAAAAACTAATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* * *
20260014 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAATATTCTAGAC
324 ACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
* * * *
20260079 GATACATTCCTTCGAGCAACTTTCTAA-ATATTATATGCT-TAGGAAATCGCATCATTTTTCTAA
389 GATACATTCCTTCGAGCAACTTTCGAACAT-TTCTATGCTCGA-GAAATCGCATCATTTGTCTAA
*** * *
20260142 ATTGTTTGTCATTAAATAAACAAGTTTTGGTC-CTGAAATTTAAAACTTATTTACGTGAGAATTG
452 ATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG-AATTAAAAACTTATTTACGTGAGAATTG
* * * *
20260206 TTTCTCTCTCTTGGTTCTTGGACGTACTTTCAAACTTTTCAAACTTTTACGAGTTCTTTTATAAC
516 --T-T-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * *
20260271 TTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTCAAACATTCCATGCT
577 TTCGATTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCT-AAACATTCCACGAT
* *
20260335 TGGG
641 AGGA
* * *
20260339 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTTGTTGTTTAAATTAAA
1 AAATCGCATCATTT-TTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTAAATTAAA
* * * * * * **
20260403 AACTTATTTACGTGAGAATTGTTTC--TCTCTTGGTTCTTGGATGAACTTTCGATCTAGTCAAAC
64 AACTTATTTACGTGAAAATAGTTTCTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAAC
* * * *
20260466 TTTTGCGAGTTCTTTCATAACTTCGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGCAA
129 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA
* * * * *
20260531 TTTTCTGAACATTCTATTCTCGGGAAATAGTAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAA
194 TTTTCTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * *
20260596 CAAGTTTTGGTTTTTTTAATCAAAAACTTATTTAC---------G-TTCTGTTGGTTCTTGGACG
259 TAAGTTTTGG-TCTTTGAATCAAAAACTAATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACG
* * * * **
20260651 AACTTCCGAACTTATCAAACTTTTACAAGTTCTTTTAAAACTTTTGTTCC-T--A--A--C---A
323 AACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
* * * * *
20260706 -G-T--ATTCCTTCGAGCAACTTTCTAAAAATTCTATGCTCGAAAAATCGCATCATTTATCTAAA
388 CGATACATTCCTTCGAGCAACTTTCGAACATTTCTATGCTCGAGAAATCGCATCATTTGTCTAAA
*
20260767 TTGTTTGTCATTTTCG-AAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGT
453 TTGTTTGTCATTTT-GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * *
20260831 TTCTCTTTGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTC-A
517 TTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA
* * * * ** * *
20260895 GTTCCTTAAAAGTATTCAAGACGATCCATTCCTTTGAGCAA-TTTTTGAACATTCCATTATCGGG
582 -TTCCTT-AAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCCACGATAGGA
* * * * **
20260959 AAATCGCATCATTTAGTCTAAATAGTTTTTAATTTTGTAAA-AAGTTCTGGTCTTTAAAACAAAA
1 AAATCGCATCATTT-TTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
* * * * * *
20261023 ACTTATTTACGTG-AGA-A--TTGTTTCTCTTGGCTGTAGGACGAACTTCCAAACTTTTCAAAAT
65 ACTTATTTACGTGAAAATAGTTTCTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACT
* *
20261084 TTTACGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAAT
130 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAAT
* ** *
20261148 TTTAC-GAACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA
195 TTT-CTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * * * *
20261212 -AAGGTTTGTTGTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTCGAC
259 TAAGTTTTGGTCTTTGAATCAAAAACTAATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGAC
* * * * *
20261276 GAACTT-TCGAACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCTTTAAAGTATTCGA
322 GAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAA
* * * * * ** *
20261340 GACAATCCATTCCTTCGAGCAATTTTCTGAACA-TTCTATTC-CTGGGAAATTACAGCATTTGGT
386 GACGATACATTCCTTCGAGCAACTTTC-GAACATTTCTATGCTC-GAGAAATCGCATCATTT-GT
* * * * *
20261403 CTAAATTGTTT-TAATTTTGGAAACAAGTTTTGGTTTTTGAATCAAAAACTTATTTAAGTGAGAA
448 CTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* *
20261467 TTGTTTCTCTTGGTCCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACT
513 TTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * *** *
20261532 TCGATTCCTTACAA-TAGTCAAGATGATACATTCCTTCGAGCAACTTTCTAAACATTTTTCGGTA
578 TCGATTCCTTA-AAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCCACGATA
*
20261596 GAA
642 GGA
* * *
20261599 AAATCGCATCATTTTTC-AAATTGTTAGTCATTTTGCAAACAAGTTTTGGTCTTTAAATTAAAAA
1 AAATCGCATCATTTTTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAA
* * * *
20261663 CTTATTTACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTTTCAAACTT
66 CTTATTTACGTGAAAATAGTTTCTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTT
* * * * *
20261728 TTATGAGTTTTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAACAATT
131 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATT
* * * * *
20261793 TT-TGAAAATTCCATTCTCGGGAAATCGCATCAATTAGTTTAAATAGTTTTTCATTTTGTAAATA
196 TTCTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATA
* * * * * *
20261857 AGTTTTGGTCTTTAAAACGATAACTAATTTATC-TGAGAATTGTTTCTCTTGGCTGTTGGACGAA
261 AGTTTTGGTCTTTGAATCAAAAACTAATTTA-CGTGAGAATTGTTTCTCTTGGTTCTTGGACGAA
* * * * *
20261921 CTTCTAAAGTTTTCAAACTTTTATGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGATG
325 CTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACG
* * *
20261985 ATTCGTTCCTTCGAGCAATTTTTCGAACATTTC-ATGCTCGAGAAATCGCATCATTTGGTCTAAA
390 ATACATTCCTTCGAGCAA-CTTTCGAACATTTCTATGCTCGAGAAATCGCATCATTT-GTCTAAA
* * **
20262049 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAATGCTTATTTACGTGAGAATTGTT
453 TTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * *
20262114 TCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTTTTTTATAGCTTCGAC
518 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAT
* * * * *
20262179 TCAC-TACAGTATTGAAGATGATACATTCCTTCGAGCAACTTTCTAAACATTCTACGATAGAA
583 TC-CTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCCACGATAGGA
* * * *
20262241 AAATCGCACCATTTTTCTAAATTGTTTGTCATTTTGTAAACATGTTTTAGTCTTTAAATTAAAAA
1 AAATCGCATCATTTTTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAA
* *
20262306 CATATTTACGTGAAAATAGTTTCTTTCTCTTTGTTCTTGGACGAACTTCCAAACTTTTCAAACTT
66 CTTATTTACGTGAAAATAGTTTCTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTT
* * *
20262371 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGTTCCATTCCTTTAAGCAATT
131 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATT
* * *
20262436 TT-TGAGCATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAATA
196 TTCTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATA
* * * ** * * * *
20262500 AGTTTTAGTCTTTAAAACGTAAACTTATCTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAAC
261 AGTTTTGGTCTTTGAATCAAAAACTAATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
* * *
20262565 TTC-CAAGCTTTTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTATAGTATTCAAGACG
326 TTCTGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACG
* * * * * * *
20262628 ATCCATTCCTTCGAGTAATTTTCCGAACA-TTCCATGCCCGGGAAATAGCATCATTTGGTCTAAA
390 ATACATTCCTTCGAGCAACTTT-CGAACATTTCTATGCTCGAGAAATCGCATCATTT-GTCTAAA
* * * * * * *
20262692 TAGTTGGTCATTTTGTAAACAACTTTTGGTCCTTGAATTAAATACTTATTTACGTGGGAATTATT
453 TTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * *
20262757 TCGTTTTTGGTTCTGGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTC-
518 TC--TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * * * * * * *
20262821 AGCTCCATAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTTGAACATTCCATGGTCGGG
581 A-TTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCCACGATAGGA
* * * * * *
20262886 AAATCACATCATTTGGTCTAAATAGTTTGTTATTTTGTAAA-AAGGTTTTGTTGTTTGAATTAAA
1 AAATCGCATCATTT-TTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTAAATTAAA
* * * * **
20262950 AACTTATTTACGTGAGAATTGTTTC--TCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAAC
64 AACTTATTTACGTGAAAATAGTTTCTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAAC
* * * * *
20263013 TTTTATGAGTTCTTTCAAAACTTCGGTTCCTTAATGTATTCAAGGCGATCCATTCCTTCAAGCAA
129 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA
* * * * * *
20263078 TTTTTTGAACATT-CTTTCTCGGGAAATAGCAGCATTTGGTCTGAATAGTTTGTCATTTTGGAAA
194 TTTTCTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
20263142 CT-AGTTTTGGTCTTTGAATCAAAAAC-ATATTTACGTGAGAATTGTTTCACTTGGTTCTTGGAC
259 -TAAGTTTTGGTCTTTGAATCAAAAACTA-ATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGAC
* *
20263205 GAACTTCTAAACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
322 GAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
* * * * * * * * * *
20263270 ACGATACATTCCTTCGAGCAACTTCCTAAAAATTCTATGCTAGGGAAATAGTATAATTTTTCTAA
387 ACGATACATTCCTTCGAGCAACTTTCGAACATTTCTATGCTCGAGAAATCGCATCATTTGTCTAA
* * * * * * * *
20263335 ATTGTTTTTCATTGTGGAAACAAGTTTTGGTCTTTCAATCAAAAACTTATTTACATGATATTTGT
452 ATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * *
20263400 TTCACTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGG
517 TTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA
* * **
20263465 TTCCTTACAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTTAACATTGTACGATA-GA
582 TTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCCACGATAGGA
* * * *
20263527 AAATCACATCATTTTTCTAAATTGTTTGTCATTTTGTAAACATGTTTTGGCCTTTAAATTAAAAA
1 AAATCGCATCATTTTTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAA
* *
20263592 CTTATTTACGTGAAAGTAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAAC
66 CTTATTTACGTGAAAATAGTTTCTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAAC
20263655 ACTCCATTCT
Statistics
Matches: 2817, Mismatches: 410, Indels: 180
0.83 0.12 0.05
Matches are distributed among these distances:
614 21 0.01
615 9 0.00
616 93 0.03
617 50 0.02
618 1 0.00
619 29 0.01
620 117 0.04
621 38 0.01
622 1 0.00
623 1 0.00
624 104 0.04
625 4 0.00
626 57 0.02
627 2 0.00
628 1 0.00
629 1 0.00
631 2 0.00
633 2 0.00
635 1 0.00
636 1 0.00
637 1 0.00
638 81 0.03
639 64 0.02
640 240 0.09
641 101 0.04
642 380 0.13
643 562 0.20
644 428 0.15
645 187 0.07
646 111 0.04
647 103 0.04
648 24 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (644 bp):
AAATCGCATCATTTTTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAA
CTTATTTACGTGAAAATAGTTTCTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTT
TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATT
TTCTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATA
AGTTTTGGTCTTTGAATCAAAAACTAATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGA
TACATTCCTTCGAGCAACTTTCGAACATTTCTATGCTCGAGAAATCGCATCATTTGTCTAAATTG
TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCC
TTAAAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCCACGATAGGA
Found at i:20264105 original size:216 final size:213
Alignment explanation
Indices: 20263663--20264863 Score: 1169
Period size: 212 Copynumber: 5.6 Consensus size: 213
20263653 ACACTCCATT
* * * **
20263663 CTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAAGGAGTTTTGGTCTTTAAA
1 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT-AA
* * * * * * *
20263728 AT-GAAAATTTATTTACGTGACAATTGTTTCTC-TTGGCTGTTGGACCG-AC-TTCTGAACTTTT
65 ATCAAAAACTTATTTACGTGAGAATTGTTTCACTTTGGTTCTTGGA-CGAACTTTC-GAACTTGT
* * * * * *
20263789 CAAACTTTTACGAGTTGTTCTATAACTT-TGTTCTTTACAA-TATTCAAGACAATCCATTCTTTC
128 CAAACTTTTACGAGTTCTTTTATAA-TTCGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTC
*
20263852 GAGCAATTTTCCGAACATTCCATG
191 GAGCAATTTTCTGAACATT-CATG
* ** * *
20263876 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTATTCCTTGAA
1 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAA
* * * * *
20263941 TTAAATACTTATTTACGTGGGAATTGTTTCGCTTTTGGTTCTGGGACGAACTTTCGAACTTGTCA
66 TCAAAAACTTATTTACGTGAGAATTGTTTCAC-TTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * *
20264006 AACTTTTACGAGTTCTTTTATAATATCAGTTACATAAAGTATTCAAGACGATCCATTCCTTCGAG
130 AACTTTTACGAGTTCTTTTATAAT-TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* *
20264071 CAATTTTTTGAACATTCCGTG
194 CAATTTTCTGAACATT-CATG
* * * * *
20264092 GTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAAA-AAGGTTTTGTTGTTTGA
1 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTAA
* * * *
20264156 ATTAAAAACTTATTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTC
65 ATCAAAAACTTATTTACGTGAGAATTGTTTCACT-TTGGTTCTTGGACGAACTTTCGAACTTGTC
** * * * *
20264221 AAACTTTTTTGAGTTCTTTCATAACTTCGGTTCCTTAATGTATTCAAGATGATCCATTCCTTCAA
129 AAACTTTTACGAGTTCTTTTATAA-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * *
20264286 ACAATTTTTTGAACATTCTTT
193 GCAATTTTCTGAACATTCATG
* * *
20264307 CTCGGGAAATGGCAGT-ATTTGGTCTAAATAGTTTGTCATTTTGGAAACTAGTTTTGGTCTTTAA
1 CTCGGGAAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAA
* * * *
20264371 ATC-AAAACTTGTTTACGTGAGAATTATTTCAC-TTGGTTCTTGGAAGAAC-TTCTAAACTTGTC
65 ATCAAAAACTTATTTACGTGAGAATTGTTTCACTTTGGTTCTTGGACGAACTTTC-GAACTTGTC
* * * *
20264433 AAACTTTTAAGAGTTCTTTTATGACTTCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCGA
129 AAACTTTTACGAGTTCTTTTAT-AATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * *
20264498 GCAACTTCCTAAAAATTTATG
193 GCAATTTTCTGAACATTCATG
* * * * * * * * *
20264519 CTAGGGAAATCGTATAATTT-TTATAAATTGTTTTTCATTTTGGAAACAAGTTTTGGTCTTTGAA
1 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAA
* * * *
20264583 TCAAAAACTTATTTACATGATATTTGTTTCAC-TTGGTTCTTGGACGAACTTCCGAACTTGTCAA
66 TCAAAAACTTATTTACGTGAGAATTGTTTCACTTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * *
20264647 ACTTTTACGAGTTCTTTTATAGCA-TCGGTTCCTTACAGTATTCAAGAGGATACATTCCTTCGAG
131 ACTTTTACGAGTTCTTTTATA--ATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
20264711 CAACTTTCTAAACATTGTACG
194 CAATTTTCTGAACATT-CATG
* * * * *
20264732 AT-AGAAAATCGCATCATTT-TTCTAAATTA-TTTGTCATTTTGTAAACATG-TTTGGTCTTTAA
1 CTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAA
* * * * * * *
20264793 ATGAAAAACTTATTTACGTGAAAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTT
65 ATCAAAAACTTATTTACGTGAGAATTG-TT-TCACT-TTGGTTCTTGGACGAACTTTCGAACTTG
20264858 TCAAAC
127 TCAAAC
20264864 ATTCCATTCT
Statistics
Matches: 833, Mismatches: 129, Indels: 50
0.82 0.13 0.05
Matches are distributed among these distances:
211 78 0.09
212 267 0.32
213 88 0.11
214 28 0.03
215 135 0.16
216 236 0.28
217 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (213 bp):
CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAA
TCAAAAACTTATTTACGTGAGAATTGTTTCACTTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
ACTTTTACGAGTTCTTTTATAATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
ATTTTCTGAACATTCATG
Found at i:20264867 original size:996 final size:994
Alignment explanation
Indices: 20263865--20265857 Score: 2555
Period size: 996 Copynumber: 2.0 Consensus size: 994
20263855 CAATTTTCCG
*
20263865 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * * *
20263930 TATTCCTT-GAATTAAATACTTATTTACGTGGGAATTGTTTCGCTTTTGGTTCTGGGACGAACTT
66 TAGTCCTTAAAATGAAA-ACTTATTTACGTGAGAATTGTTT--CTCTTGGCTCTGGGACCAACTT
*
20263994 -TCGAACTTGTCAAACTTTTACGAGTTCTTTTAT-AATATCAGTTACATA-AAGTATTCAAGACG
128 CT-GAACTTGTCAAACTTTTACGAGTGCTTTTATGAAT-T-AGTTACATACAA-TATTCAAGACG
* * * * ** *
20264056 ATCCATTCCTTCGAGCAATTTTTTGAACATTCCGTGGTCGGGAAATCGCATCATTTGGTCTAAAT
189 ATCCATTCCTTCGAGCAATTTCTTGAACATTCCATGCTCCGGAAATCAAATAATTTGGTCTAAAT
* * * ** *
20264121 AGTTTGTTATTTTGTAAA-AAGGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGGGAATTGTT
254 AGTTTGTCATTTTGTAAACAA-CTTTTGGTCCTTGAATTAAAAACTTATTTACATGGGAATTGTT
* * * ** *
20264185 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTTTGAGTTC-TTTCATAACTTC
318 TCACTCTTAGTTCTGGGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTTCATAACTTA
* * * * * *
20264249 GGTTCCTTAATGTATTCAAGATGATCCATTCCTTCAAACAATTTTTTGAACATT-CTTTCTCGGG
383 AGTTCCATAAAGTATTCAAGATGATCCATTCCTTCAAACAATTTTTCGAACATTCCATGCTCGGG
* * *
20264313 AAATGGCAGT-ATTTGGTCTAAATAGTTTGTCATTTTGGAAACTA-GTTTTGGTCTTT-AAATCA
448 AAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTTGGAAA-AAGGTTTTGGTCTTTGAAATAA
* *
20264375 AAACTTGTTTACGTGAGAATTA-TT-TCACTTGGTTCTTGGAAGAAC-TTCTAAACTTGTCAAAC
511 AAACTTATTTACGTGAGAATTATTTCTCACTTGGTTCTTGGAAGAACTTTC-AAACTAGTCAAAC
* * * *
20264437 TTTTAAGAGTTCTTTTATGACTTCGGTTCCTTACA-GTATTCAAGACGATACATTCCTTCGAGCA
575 TTTTAAGAGTTCTTTCATAACTTCGGTTCCTTA-ATGCATTCAAGACGATACATTCCTTCAAGCA
* * * * * * *
20264501 ACTTCCTAAAAATT-TATGCTAGGGAAATCGTATAATTT-TTATAAATTGTTTTTCATTTTGGAA
639 ACTTCCTAAAAATTCTATGATAGGGAAATAGCAGAATTTGGTATAAATAGTTTGTCATTTT---A
* *
20264564 ACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACATGATATTTGTTTCACTTGGTTCTTGGACG
701 ACAAGTTTTGGTCTTTGAATC-AAAACTTATTTACATGAGAATTGTTTCACTTGGTTCTTGGACG
* * *
20264629 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCATCGGTTCCTTACAGTATTCAAGA
765 AACTTCCAAACTTGTCAAACTTTTAAGAGTTCTTTTATAACATCGGTTCCTTACAGTATTCAAGA
* * * *
20264694 GGATACATTCCTTCGAGCAACTTTCTAAACATTGTACGATA-GAAAATCGCATCATTTTTCTAAA
830 CGATACATTCCTTCGAGCAACTTTCTAAAAATTCTACGATAGGAAAATCGCATAATTTTTCTAAA
* * *
20264758 TTATTTGTCATTTTGTAAACATG-TTTGGTCTTTAAATGAAAAACTTATTTACGTGAAAATAGTT
895 TTATTTGTCATTTTGGAAACAAGTTTTGGTCTTTAAATCAAAAACTTATTTACGTGAAAATAG-T
*
20264822 TCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCA
959 T-TC-C-CTTGGTTCTTGGACGAACTTCCAAACTTGTCA
* * *
20264861 AACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * *
20264926 TGGTCTTTAAAATGAAAATTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACCAACTTCTG
66 TAGTCCTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTCTGGGACCAACTTCTG
* * ** * *
20264991 CACTTTTCAAACTTTTACGAGTGCTTTTATGCCTTTGTTCCATACAATATTCAAGACGATCCATT
131 AACTTGTCAAACTTTTACGAGTGCTTTTATGAATTAGTTACATACAATATTCAAGACGATCCATT
*
20265056 CTTTCGAGCAATTTCTTGAACATTCCATGCTCCGGAAATCAAATAATTTGGTCTAAATAGTTTGT
196 CCTTCGAGCAATTTCTTGAACATTCCATGCTCCGGAAATCAAATAATTTGGTCTAAATAGTTTGT
* * *
20265121 CATTTTGTAAACAACTTTTGGTCCTTGAATTAAATAGTTATTTACATGGGAATTGTTTCACTTTT
261 CATTTTGTAAACAACTTTTGGTCCTTGAATTAAAAACTTATTTACATGGGAATTGTTTCACTCTT
* * * * *
20265186 AGTTCTGGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTTATAATTTAAGTTTCAT
326 AGTTCTGGGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTTCATAACTTAAGTTCCAT
*** *
20265251 AAAGTATTCAAGATGATCCATTCCTTCGCGCAATTTTTCGAACATTCCATGGTCGGGAAATCGCA
391 AAAGTATTCAAGATGATCCATTCCTTCAAACAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* * * * *
20265316 TCATTTGGTCTAAATAGTTTGTTATTTTGTAAAAAGGTTTTGTTTTTTGAATTAAAAACTTATTT
456 TCATTTGGTCTAAATAGTTTGTCATTTTGGAAAAAGGTTTTGGTCTTTGAAATAAAAACTTATTT
* * * *
20265381 ACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTATGAGTT
521 ACGTGAGAATTATTTCTCACTTGGTTCTTGGAAGAACTTTCAAACTAGTCAAACTTTTAAGAGTT
* * ** * *
20265446 CTTTCATAACTTCGGTTCCTTAATGCATTCAAGACGATCCATTCCTTCAAGCAATTTTTTGAATA
586 CTTTCATAACTTCGGTTCCTTAATGCATTCAAGACGATACATTCCTTCAAGCAACTTCCTAAAAA
* * * *
20265511 TTCTATTATCGGGAAATAGCAGCATTTGGTGTAAATAGTTTGTCATTTTAACAAGTTTTGGTCTT
651 TTCTATGATAGGGAAATAGCAGAATTTGGTATAAATAGTTTGTCATTTTAACAAGTTTTGGTCTT
*
20265576 TGAATCAAAACTTATTTACGTGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCCAAACTTGTC
716 TGAATCAAAACTTATTTACATGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
20265641 AAACTTTTAAGGGTTCTTTTATAACTTCGGTTCCTTACGGTATTCGAGACGATACATTCCTTCGA
781 AAACTTTTAAGAGTTCTTTTATAACATCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCGA
*** * * *
20265706 GCAACTTTCTAAAAATTCTATTCTAGGGAAATCGCATAATTTTTCTAAATTGTTTTTCATTTTGG
846 GCAACTTTCTAAAAATTCTACGATAGGAAAATCGCATAATTTTTCTAAATTATTTGTCATTTTGG
* * *
20265771 AAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGATAATTGTTTCCCTTGGTTCTTGGA
911 AAACAAGTTTTGGTCTTTAAATCAAAAACTTATTTACGTGAAAATAGTTTCCCTTGGTTCTTGGA
* *
20265836 GGAACTTCCGAACTTGTCA
976 CGAACTTCCAAACTTGTCA
20265855 AAC
1 AAC
20265858 TTTTACGAGT
Statistics
Matches: 854, Mismatches: 125, Indels: 38
0.84 0.12 0.04
Matches are distributed among these distances:
993 172 0.20
994 139 0.16
995 56 0.07
996 247 0.29
997 73 0.09
998 130 0.15
999 20 0.02
1000 17 0.02
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (994 bp):
AACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
TAGTCCTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTCTGGGACCAACTTCTG
AACTTGTCAAACTTTTACGAGTGCTTTTATGAATTAGTTACATACAATATTCAAGACGATCCATT
CCTTCGAGCAATTTCTTGAACATTCCATGCTCCGGAAATCAAATAATTTGGTCTAAATAGTTTGT
CATTTTGTAAACAACTTTTGGTCCTTGAATTAAAAACTTATTTACATGGGAATTGTTTCACTCTT
AGTTCTGGGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTTCATAACTTAAGTTCCAT
AAAGTATTCAAGATGATCCATTCCTTCAAACAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
TCATTTGGTCTAAATAGTTTGTCATTTTGGAAAAAGGTTTTGGTCTTTGAAATAAAAACTTATTT
ACGTGAGAATTATTTCTCACTTGGTTCTTGGAAGAACTTTCAAACTAGTCAAACTTTTAAGAGTT
CTTTCATAACTTCGGTTCCTTAATGCATTCAAGACGATACATTCCTTCAAGCAACTTCCTAAAAA
TTCTATGATAGGGAAATAGCAGAATTTGGTATAAATAGTTTGTCATTTTAACAAGTTTTGGTCTT
TGAATCAAAACTTATTTACATGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCCAAACTTGTC
AAACTTTTAAGAGTTCTTTTATAACATCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCGA
GCAACTTTCTAAAAATTCTACGATAGGAAAATCGCATAATTTTTCTAAATTATTTGTCATTTTGG
AAACAAGTTTTGGTCTTTAAATCAAAAACTTATTTACGTGAAAATAGTTTCCCTTGGTTCTTGGA
CGAACTTCCAAACTTGTCA
Found at i:20264999 original size:139 final size:140
Alignment explanation
Indices: 20264737--20265002 Score: 344
Period size: 139 Copynumber: 1.9 Consensus size: 140
20264727 GTACGATAGA
* *
20264737 AAATCGCATCATTTTTCTAAATTATTTGTCATTTTGTAAACATGTTTGGTCTTTAAATGAAAAAC
1 AAATCGCATCATTTGTCTAAATTATTTGTCATTTTGTAAACAAGTTTGGTCTTTAAATGAAAAAC
* * *
20264802 TTATTTACGTGAAAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACATT
66 TTATTTACGTGAAAATA-TGTCTCTCTCTTGGCTCTTGGACCAACTTCCAAACTTTTCAAACATT
20264867 CCATTCTCGGG
130 CCATTCTCGGG
*
20264878 AAATCGCATCATTTAGTCTAAA-TAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAATG-A
1 AAATCGCATCATTT-GTCTAAATTA-TTTGTCATTTTGTAAACAAG-TTTGGTCTTT-AAATGAA
* * * ***
20264941 AAATTTATTTACGTGAGAAT-TGT-T-TCTCTTGGCTGTTGGACCAACTTCTGCACTTTTCAAAC
62 AAACTTATTTACGTGAAAATATGTCTCTCTCTTGGCTCTTGGACCAACTTCCAAACTTTTCAAAC
20265003 TTTTACGAGT
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
139 32 0.29
140 1 0.01
141 18 0.17
142 24 0.22
143 29 0.27
144 5 0.05
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (140 bp):
AAATCGCATCATTTGTCTAAATTATTTGTCATTTTGTAAACAAGTTTGGTCTTTAAATGAAAAAC
TTATTTACGTGAAAATATGTCTCTCTCTTGGCTCTTGGACCAACTTCCAAACTTTTCAAACATTC
CATTCTCGGG
Found at i:20265859 original size:213 final size:215
Alignment explanation
Indices: 20264856--20266065 Score: 1300
Period size: 213 Copynumber: 5.7 Consensus size: 215
20264846 CTTCCAAACT
* * * *
20264856 TTTC-AAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAAC
1 TTTCTAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * * * *
20264920 AAGTTTTGGTCTTTAAAATGAAAATTTATTTACGTGAGAATTG-TT-TCTCTTGGCTGTTGGACC
66 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * * ** * * *
20264983 AACTTCTGCACTTTTCAAACTTTTACGAGTGCTTTTATGCCTT-TGTTCCATACAATATTCAAGA
131 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
*
20265047 CGATCCATTCTTTCGAGCAA
196 CGATCCATTCCTTCGAGCAA
* * **
20265067 TTTCTTGAACATTCCATGCTCCGGAAATCAAATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
1 TTTC-TAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * * * * * * * *
20265132 CAACTTTTGGTCCTTGAATTAAATAGTTATTTACATGGGAATTGTTTCACTTTTAGTTCTGGGAT
65 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * ** * * *
20265197 GAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTTATAATTTAAGTTTCATAAAGTATTCAA
130 GAACTTCCGAACTTGTCAAACTTTTACGAGTTC-TTTTATAACTTCGGTTCCTTACAGTATTCAA
* *
20265262 GATGATCCATTCCTTCGCGCAA
194 GACGATCCATTCCTTCGAGCAA
* * * * *
20265284 TTTTTCGAACATTCCATGGTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAAA
1 TTTCT-AAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20265349 -AAGGTTTTGTTTTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGA
65 CAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * * *
20265413 CGAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTCATAACTTCGGTTCCTTA-ATGCATTCA
129 CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACA-GTATTCA
*
20265477 AGACGATCCATTCCTTCAAGCAA
193 AGACGATCCATTCCTTCGAGCAA
* * * * ** * ** *
20265500 TTTTTTGAATATTCTATTATCGGGAAATAGCAGCATTTGGTGTAAATAGTTTGTCA-TTT-T-AA
1 -TTTCTAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
20265562 CAAGTTTTGGTCTTTGAA-TCAAAACTTATTTACGTGAGAATTG-TT-TCACTTGGTTCTTGGAC
65 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * * * *
20265624 GAACTTCCAAACTTGTCAAACTTTTAAGGGTTCTTTTATAACTTCGGTTCCTTACGGTATTCGAG
130 GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
*
20265689 ACGATACATTCCTTCGAGCAA
195 ACGATCCATTCCTTCGAGCAA
* * * * * * * *
20265710 CTTTCTAAAAATTCTATTCTAGGGAAATCGCATAATTT-TTCTAAATTGTTTTTCATTTTGGAAA
1 -TTTCTAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20265774 CAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGATAATTGTTTC-C-CTTGGTTCTTGGAG
65 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
*
20265837 GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTACAGTATTCAAG
130 GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
* *
20265902 ACAATACATTCCTTCGAGCAA
195 ACGATCCATTCCTTCGAGCAA
* * * * ** *
20265923 CTTTCTAAAAATTCTATGCTAGGGAAATCGCATAATTT-TTCTAAATTCTTCGTCATTTTGTAAA
1 -TTTCTAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * *
20265987 CAAGTTTTGATCTTTAAATTAAAAACTTATTTACGTGAGCAGTGTTTCTCTCTTGGTTCTTGGAT
65 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
*
20266052 GAACTTCCAAACTT
130 GAACTTCCGAACTT
20266066 TTAAAACATT
Statistics
Matches: 844, Mismatches: 135, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
209 13 0.02
210 122 0.14
211 6 0.01
212 43 0.05
213 316 0.37
214 9 0.01
215 67 0.08
216 94 0.11
217 174 0.21
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (215 bp):
TTTCTAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
CGATCCATTCCTTCGAGCAA
Found at i:20266594 original size:214 final size:214
Alignment explanation
Indices: 20266070--20269857 Score: 4106
Period size: 214 Copynumber: 17.7 Consensus size: 214
20266060 AAACTTTTAA
* * * * *
20266070 AACATTCCATTCTCGGTAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * * * *
20266135 TGGTCTTTTAA-AAGAAAACATATTTACGTGACAATTGTTTCTCTTTTGTTGTTGGACCAAC-TT
66 TGGTCTTTGAATTA-AAAACTTATTTACGTGAGAATTGTTTCTC-TTGGTTCTTGGACGAACTTT
* *
20266198 CTGAACTTTTCAAACTTTTACGAATTCTTTTATAACATT--GTTCCTTACAA-TATTCAAGACGA
129 C-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTA-AAGTATTCAAGACGA
*
20266260 TGCATTCCTTCGAGCAATTTT-TCG
191 TCCATTCCTTCGAGCAATTTTCT-G
* * * *
20266284 AACATTTCATG--CGGGAAATCGCATCATTTGGTCTAAATAGTTTGCCATTTTGTAAAAAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
20266347 TGGTCTTTCAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTGGTTTTTGGACGAACTTTCA
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCG
*
20266412 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAATGTATTCAAGACGATCCAT
131 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* *
20266477 TCTTTCGAGCAATTTTTTG
196 TCCTTCGAGCAATTTTCTG
* * *
20266496 AACATTCCATGCTCGGGAAAT-GAAATCATTTGGTCTAAATAGTTTGTCATTTCGTAAACAACTT
1 AACATTCCATGCTCGGGAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
** * * *
20266560 TTGGTCCCTGAATTAAAACCTTATTTATGTGAGAATTGTTTCTCTTTTGGTTCTGGGACGAACTT
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAACTT
* * * * * * * *
20266625 CCGAACTTGTCAAACTTTTATGAGTT-TTTTATAATTTCAGTTCCATAAGGTATTCCAGATGATC
128 TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
*
20266689 CATTCCTTTGAGCAATTTTC-G
193 CATTCCTTCGAGCAATTTTCTG
** * * *
20266710 AACATTCCATTATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCTTTTTATAAA-AAGGTA
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTT
* *
20266774 TTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTT
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG--TTTCTCTTGGTTCTTGGACGAACTT
* * * * ** * * *
20266839 TCGAACTAGTCAAAATTTTACAAGTTCTTTCATAACTTCTATTGCTTAATGTATTGC-AGATGAT
128 TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-CAAGACGAT
* *
20266903 CCATTTCTTCGAGCAATATTCTG
192 CCATTCCTTCGAGCAATTTTCTG
* ** * * * * *
20266926 AACATTCTATTATCGGGAAATAGCAGCATTTGGTCAAAATTGTTTGTCATTTTGCAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-TT
**
20266991 TTGGTCTTTGAATTAAATGCTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTC
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTC
* * * * *
20267056 GAGCTTGTCAAACTTTTACGAGTTATTCTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
**
20267121 TTTCCTTTAAGCAATTTT-TG
195 -TTCCTTCGAGCAATTTTCTG
* * ** * *
20267141 AACATTCCATTCTCGGGAAATCGCATCATTTAGTGAAAATAGTTTTTCATTTTGTAAATAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* *** * *
20267206 TGGTCTTTAAAACGAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGC-TGGATGAAC-TTC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGG-TTCTTGGACGAACTTTC
* * ** * *
20267269 TAAACTTTTCAAACTTTTTTGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGACTATCC
130 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
20267333 ATTCCTTCGAGCAATTTTCTG
194 ATTCCTTCGAGCAATTTTCTG
* *
20267354 AACATTCCATGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTT
**
20267419 TTGGTCTTTGAATTAAATGCTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTC
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTC
* * * *
20267484 GAGCTTGTCAAACTTTTAC--GTTCTTTTATAGCTTCGGTTCCTTACAGTATTCAAGACGATACA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* *
20267547 TTCCTTCGAGCAACTTTCTA
195 TTCCTTCGAGCAATTTTCTG
* * * * ** * * * *
20267567 AACATTCTACGATAGAAAAAACACATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * *
20267631 TGGTCTTTAAATTAAAAACTTATTTACGTGAAAATACTTTCTCTCTCTTGGTTCTTGGACGAACT
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT--TGT-T-TCTCTTGGTTCTTGGACGAACT
* * * * *
20267696 TCCAAACTTTTCAAACTTTTGCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
127 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* *
20267761 CCATTCC-TCTAACCAATTTT-TG
192 CCATTCCTTC-GAGCAATTTTCTG
* * * * * *
20267783 AACATTCCATTCTTGGGAAATCGCATCATTTAGTATAAATAGTTTTTCATTTTGTAAATAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* ** * * * *
20267848 TGGTCTTTAAAACAAAAACTTATCTACGTGAGAATTGTTTCTCTTGGTTGTTGGATGAACTTTCA
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCG
* * * * *
20267913 AACTTTTCAAACATTTACGAGTTCTTTTATAGCTT-TGTTCCTTATAGTATTCAAGACGATCCAT
131 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * *
20267977 TCCTTCAAGCCATTTT-TCA
196 TCCTTCGAGCAATTTTCT-G
*
20267996 AACATTCCATGCT-GGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
1 AACATTCCATGCTCGG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * * * *
20268060 TTGGTCTTTGAATTATATATTTATTTATGTGAGAATTGTTCCTCTTTTGGTTCTTGGACGAACTT
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT--TCTCTTGGTTCTTGGACGAACTT
* * * * * *
20268125 CCGAACTTGTTAAACTTTTACGAGTTC-TTTATAATTTCAGTTCCATAAAGTATTCAAGACAATC
128 TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
**
20268189 CATTCCTTCGAGCAATTTTCCA
193 CATTCCTTCGAGCAATTTTCTG
* * * *
20268211 AACATTCCATGCTCGAGAAATTGCATCATTCGGTCTAAATAGTTTGTCGTTTTGTAAA-AAGGTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTT
* * *
20268275 TTGTTGTTTGAATTAAAATCTTATTTACGTGAGAATTTGTTTCTCTCTTGGTTCTTGGACGAACT
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TTG-TT-TCTCTTGGTTCTTGGACGAACT
* ** * *
20268340 TTCGAACTAGTCAAACTTTTACGAGTTCTTACAAAACTTCGGTTCCTTAAAGTATTCAAAACGAT
127 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
*
20268405 CCATTCCTTCGAGCAATTTTCTA
192 CCATTCCTTCGAGCAATTTTCTG
* * * * * * * * *
20268428 AACATTCTATTCTAGGGAAATAGCAACTTTTGGTCTAAATTGTTTGTCTTTTTGGAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
** * * * * *
20268493 TGAACTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTAGTCCTTGGATGAACTTCCG
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCG
* * * * * * *
20268558 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCATACAGTATTTAAGATGATACAT
131 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * *
20268623 TCATTCGAGTAACTTTCTA
196 TCCTTCGAGCAATTTTCTG
* * ** * * *
20268642 AACATTCTATGCTAGAAAAATCGTATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * *
20268706 TGGT-TTTAAATTAAAAACTTATTAACGTGAGAATTGTTTATCTTTCTTGGTTCTTGGACGAGCT
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TC--TCTTGGTTCTTGGACGAACT
* * * * *
20268770 TCCAAAGTTTTCAAACTTTTATGAGTTCTTTTATAA-TTACGGTTCCTTAAAGTATTCAAGACGA
127 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-CGGTTCCTTAAAGTATTCAAGACGA
* *
20268834 TCAATTCCTTTGAGCAATTTT-TG
191 TCCATTCCTTCGAGCAATTTTCTG
* * ** * * *
20268857 AACATTCGATTCTCGGGAAATTACATTATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *** * * * *
20268922 AGCTCTTTAAAACGAAAACTTATCTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTTTG
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCG
* * * * *
20268987 GACATT-TTAAACTTTTACGAGTTCTTTTATAACTT-GGTTACTTATAGTATTCAAGACGATCGA
131 AAC-TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* *
20269050 TTCCTTCGATCAATTTTCCG
195 TTCCTTCGAGCAATTTTCTG
* *
20269070 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAG--TGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
** * * * * * * *
20269133 TGGTCCATGAATTAAATACTTATTTATGTGGGAATTGTTTCACTTTTAGTTCTGGGACGAACTTC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT--CTCTTGGTTCTTGGACGAACTTT
* * * *
20269198 CGAACTTGTCAAACTTTTACAAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
20269263 ATTCCTTCGAGCAATTTT-TCG
194 ATTCCTTCGAGCAATTTTCT-G
* * *
20269284 AACATTCCATGGTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTAATTTTGTAAA-AAGGTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTT
* * * *
20269348 TTGTTGTTTGAATTAAAAACTCATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTT
*** * * * * * *
20269413 TCGAACAACTAAAACTATTATGAGTTCTTTCATAACTTTGGTTCCTTAATGTATTCAAGACGATC
128 TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
20269478 CATTCCTTCGAGCAATTTTCTG
193 CATTCCTTCGAGCAATTTTCTG
* * * * * * * *
20269500 AACATTCTATTCTCGTGAAATAGCAACATTTGGTCTAAATAGTTTGTCGTTTTGGAATCAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * * *
20269565 TAGTCTTTGACTCAAAAACTTATTTACGTGATTAATTGTTTCACTTGGTTCTTGGACGAACTTCC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTTGGTTCTTGGACGAACTTTC
* * ** *
20269630 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACTTTACA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* *
20269695 TTCCTTCGAGCAACTTTCTA
195 TTCCTTCGAGCAATTTTCTG
* ** * * * ** *
20269715 AAAATTCTTTGCTAGGGAAATCGCATAATTT-TTCTAAATTCTTTGTCATTTAGTAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * *
20269779 TGGTCTTTAAATTAAAAATTTATTTAAGTGAGAATTGTTTCTATCTTGGTTCTTGGATGAACTTC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC--TCTTGGTTCTTGGACGAACTTT
* *
20269844 CAAACTTTTCAAAC
129 CGAACTTGTCAAAC
20269858 ATTCCATTCT
Statistics
Matches: 2985, Mismatches: 514, Indels: 149
0.82 0.14 0.04
Matches are distributed among these distances:
210 2 0.00
211 127 0.04
212 301 0.10
213 474 0.16
214 628 0.21
215 615 0.21
216 519 0.17
217 316 0.11
218 3 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (214 bp):
AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCG
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCGAGCAATTTTCTG
Found at i:20266931 original size:430 final size:427
Alignment explanation
Indices: 20266070--20269857 Score: 3981
Period size: 430 Copynumber: 8.8 Consensus size: 427
20266060 AAACTTTTAA
* * * * *
20266070 AACATTCCATTCTCGGTAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * * * *
20266135 TGGTCTTTTAA-AAGAAAACATATTTACGTGACAATTGTTTCTCTTTTGTTGTTGGACCAACTTC
65 TGGTCTTTGAATTA-AAAACTTATTTACGTGAGAATTGTTTCTCTTTGGTTCTTGGACGAACTTC
* * * * *
20266199 TGAACTTTTCAAACTTTTACGAATTCTTTTATAACATT--GTTCCTTACAATATTCAAGACGATG
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTA-AGTATTCAAGACGATC
* *
20266262 CATTCCTTCGAGCAATTTTTCGAACATTTCA-T-GCGGGAAATCGCATCATTTGGTCTAAATAGT
192 CATTCCTTCGAGCAA-TTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * * *
20266325 TTGCCATTTTGTAAAAAACTTTTGGTCTTTCAATTAAATACTTATTTACGTGAGAATTG--TTTC
256 TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTTTC
* *
20266388 TCTTGGTTTTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
321 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTC
* *
20266453 CTTAATGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTTG
385 CTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG
* * *
20266496 AACATTCCATGCTCGGGAAATGAAATCATTTGGTCTAAATAGTTTGTCATTTCGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
** * * *
20266561 TGGTCCCTGAATTAAAACCTTATTTATGTGAGAATTGTTTCTCTTTTGGTTCTGGGACGAACTTC
65 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-TTTGGTTCTTGGACGAACTTC
* * * * * *
20266626 CGAACTTGTCAAACTTTTATGAGTT-TTTTATAATTTCAGTTCCATAAGGTATTCCAGATGATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-GTATTCAAGACGATCC
* *
20266690 ATTCCTTTGAGCAATTTTCGAACATTCCATTATCGGGAAATCGCATCATTTGGTCTAAATAGTTT
193 ATTCCTTCGAGCAATTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * *
20266755 GTCTTTTTATAAA-AAGGTATTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTTTCT
258 GTCATTTTGTAAACAA-GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTTTCT
* * * * ** *
20266819 CTTGGTTCTTGGACGAACTTTCGAACTAGTCAAAATTTTACAAGTTCTTTCATAACTTCTATTGC
322 CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCC
* * *
20266884 TTAATGTATTGC-AGATGATCCATTTCTTCGAGCAATATTCTG
386 TTAATGTATT-CAAGACGATCCATTCCTTCGAGCAATTTTCTG
* ** * * * *
20266926 AACATTCTATTATCGGGAAATAGCAGCATTTGGTCAAAATTGTTTGTCATTTTGCAAACAAGTTT
1 AACATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-TT
** *
20266991 TTGGTCTTTGAATTAAATGCTTATTTACGTGAGAATTGTTTCTC-TTGGTTCTTGGACGAACTTT
64 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGGTTCTTGGACGAACTTC
* * * * *
20267055 CGAGCTTGTCAAACTTTTACGAGTTATTCTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCG
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAGTATTCAAGACGATCC
** * * **
20267120 ATTTCCTTTAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATCATTTAGTGAAAATAGTT
193 A-TTCCTTCGAGCAATTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * ***
20267185 TTTCATTTTGTAAATAAGTTTTGGTCTTTAAAACGAAAACTTATTTACGTGAGAATTG--TTTCT
257 TGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTTTCT
* * * * **
20267248 CTTGGCTGC-TGGATGAAC-TTCTAAACTTTTCAAACTTTTTTGAGTTCTTTTATAACTTGGTTC
322 CTTGG-TTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGTTC
*
20267311 CTTACA-GTATTCAAGACTATCCATTCCTTCGAGCAATTTTCTG
385 CTTA-ATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG
* *
20267354 AACATTCCATGCTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTT
** *
20267419 TTGGTCTTTGAATTAAATGCTTATTTACGTGAGAATTGTTTCTC-TTGGTTCTTGGACGAACTTT
64 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGGTTCTTGGACGAACTTC
* * *
20267483 CGAGCTTGTCAAACTTTTAC--GTTCTTTTATAGCTTCGGTTCCTTACAGTATTCAAGACGATAC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATCC
* * * *** * ** * * * *
20267546 ATTCCTTCGAGCAACTTTCTAAACATTCTACGATAGAAAAAACACATCATTT-TTCTAAATTGTT
193 ATTCCTTCGAGCAATTTTC-GAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* **
20267610 TGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAATACTTTCTCT
257 TGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTT-T-T
* * * *
20267675 CTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTGCGAGTTCTTTTATAACTTCGGTT
320 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTT
* * * *
20267740 CCTTAAAGTATTCAAGATGATCCATTCC-TCTAACCAATTTT-TG
384 CCTTAATGTATTCAAGACGATCCATTCCTTC-GAGCAATTTTCTG
* * * * * *
20267783 AACATTCCATTCTTGGGAAATCGCATCATTTAGTATAAATAGTTTTTCATTTTGTAAATAAGTTT
1 AACATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* ** * * * *
20267848 TGGTCTTTAAAACAAAAACTTATCTACGTGAGAATTGTTTCTC-TTGGTTGTTGGATGAACTTTC
65 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGGTTCTTGGACGAACTTCC
* * * * *
20267912 AAACTTTTCAAACATTTACGAGTTCTTTTATAGCTT-TGTTCCTTATAGTATTCAAGACGATCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATCCA
* * * *
20267976 TTCCTTCAAGCCATTTTTCAAACATTCCATGCT-GGAGAAATCGCATCATTTGGTCTAAATAGTT
194 TTCCTTCGAG-CAATTTTCGAACATTCCATTCTCGG-GAAATCGCATCATTTGGTCTAAATAGTT
* * * * * * **
20268040 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTATATATTTATTTATGTGAGAATTGTTCCTCT
257 TGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTTTCT
* * * * *
20268105 TTTGGTTCTTGGACGAACTTCCGAACTTGTTAAACTTTTACGAGTTC-TTTATAATTTCAGTTCC
322 CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCC
* * * **
20268169 ATAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCCA
386 TTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG
* * *
20268211 AACATTCCATGCTCGAGAAATTGCATCATTCGGTCTAAATAGTTTGTCGTTTTGTAAA-AAGGTT
1 AACATTCCATGCTCGGGAAA-TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTT
* * *
20268275 TTGTTGTTTGAATTAAAATCTTATTTACGTGAGAATTTGTTTCTCTCTTGGTTCTTGGACGAACT
64 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TTGTTTCTCT-TTGGTTCTTGGACGAACT
* * ** * *
20268340 TTCGAACTAGTCAAACTTTTACGAGTTCTTACAAAACTTCGGTTCCTTAAAGTATTCAAAACGAT
127 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAGTATTCAAGACGAT
* * * * * * *
20268405 CCATTCCTTCGAGCAATTTTCTAAACATTCTATTCTAGGGAAATAGCAACTTTTGGTCTAAATTG
191 CCATTCCTTCGAGCAATTTTC-GAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAG
* * ** * *
20268470 TTTGTCTTTTTGGAAACAAGTTTTGAACTTTGAATCAAAAACTTATTTACGTGAGAATTG--TTT
255 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTTT
* * * * *
20268533 CTCTTAGTCCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATT
320 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTT
* * * * * * * *
20268598 CCATACA-GTATTTAAGATGATACATTCATTCGAGTAACTTTCTA
384 CCTTA-ATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG
* * ** * * *
20268642 AACATTCTATGCTAGAAAAATCGTATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
20268706 TGGT-TTTAAATTAAAAACTTATTAACGTGAGAATTGTTTATCTTTCTTGGTTCTTGGACGAGCT
65 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCT-TTGGTTCTTGGACGAACT
* * * *
20268770 TCCAAAGTTTTCAAACTTTTATGAGTTCTTTTATAA-TTACGGTTCCTTAAAGTATTCAAGACGA
127 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-CGGTTCCTT-AAGTATTCAAGACGA
* * * * ** * *
20268834 TCAATTCCTTTGAGCAATTTTTGAACATTCGATTCTCGGGAAATTACATTATTTAGTCTAAATAG
190 TCCATTCCTTCGAGCAATTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAG
* * * *** *
20268899 TTTTTCATTTTGTAAACAAGTTTAGCTCTTTAAAACGAAAACTTATCTACGTGAGAATTG--TTT
255 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTTT
* * * * *
20268962 CTCTTGGCTGTTGGACGAACTTTTGGACATT-TTAAACTTTTACGAGTTCTTTTATAACTTGGTT
320 CTCTTGGTTCTTGGACGAACTTTCGAAC-TTGTCAAACTTTTACGAGTTCTTTTATAACTTGGTT
* * * *
20269026 ACTT-ATAGTATTCAAGACGATCGATTCCTTCGATCAATTTTCCG
384 CCTTAAT-GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG
* *
20269070 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAG--TGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
** * * * * * *
20269133 TGGTCCATGAATTAAATACTTATTTATGTGGGAATTGTTTCACTTTTAGTTCTGGGACGAACTTC
65 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-TTTGGTTCTTGGACGAACTTC
* * * *
20269198 CGAACTTGTCAAACTTTTACAAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TTAAGTATTCAAGACGATCC
** *
20269263 ATTCCTTCGAGCAATTTTTCGAACATTCCATGGTCGGGAAATCACATCATTTGGTCTAAATAGTT
193 ATTCCTTCGAGCAA-TTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * *
20269328 TGTAATTTTGTAAA-AAGGTTTTGTTGTTTGAATTAAAAACTCATTTACGTGAGAATTGTTTCTC
257 TGTCATTTTGTAAACAA-GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTTTC
* *** * * * *
20269392 TCTTGGTTCTTGGATGAACTTTCGAACAACTAAAACTATTATGAGTTCTTTCATAACTTTGGTTC
321 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTC
20269457 CTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG
385 CTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG
* * * * * * *
20269500 AACATTCTATTCTCGTGAAATAGCAACATTTGGTCTAAATAGTTTGTCGTTTTGGAATCAAGTTT
1 AACATTCCATGCTCGGGAAAT-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * *
20269565 TAGTCTTTGACTCAAAAACTTATTTACGTGATTAATTGTTTCAC-TTGGTTCTTGGACGAACTTC
65 TGGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTTTGGTTCTTGGACGAACTTC
* ** *
20269629 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACTTTAC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATCC
* * * * * * * **
20269694 ATTCCTTCGAGCAACTTTCTAAAAATT-CTTTGCTAGGGAAATCGCATAATTT-TTCTAAATTCT
193 ATTCCTTCGAGCAATTTTC-GAACATTCCATT-CTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * * *
20269757 TTGTCATTTAGTAAACAAGTTTTGGTCTTTAAATTAAAAATTTATTTAAGTGAGAATTGTTTCTA
256 TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTTTC
* * * *
20269822 TCTTGGTTCTTGGATGAACTTCCAAACTTTTCAAAC
321 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
20269858 ATTCCATTCT
Statistics
Matches: 2806, Mismatches: 476, Indels: 156
0.82 0.14 0.05
Matches are distributed among these distances:
425 75 0.03
426 257 0.09
427 241 0.09
428 546 0.19
429 483 0.17
430 647 0.23
431 381 0.14
432 162 0.06
433 14 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (427 bp):
AACATTCCATGCTCGGGAAATGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGGTTCTTGGACGAACTTCCG
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAGTATTCAAGACGATCCATT
CCTTCGAGCAATTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
ATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTTTCTCTTG
GTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGTTCCTTAAT
GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG
Found at i:20269928 original size:141 final size:138
Alignment explanation
Indices: 20269729--20269996 Score: 356
Period size: 141 Copynumber: 1.9 Consensus size: 138
20269719 TTCTTTGCTA
* * * *
20269729 GGGAAATCGCATAATTTTTCTAAATTCTTTGTCATTTAGTAAACAAGTTTTGGTCTTTAAATTAA
1 GGGAAATCACATAATTTGTCTAAATACTTTGTCATTTAGTAAACAAGTTTTGGTCTTTAAAATAA
* * **
20269794 AAATTTATTTAAGTGAGAATTGTTTCTATCTTGGTTCTTGGATGAACTTCCAAACTTTTCAAACA
66 AAACTTATTTAAGTGAGAATTGTTTC--TCTTGGCTCTTGGACCAACTTCCAAACTTTTCAAACA
20269859 TTCCATTCTT
129 TTCCATTCTT
* * * * *
20269869 GGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAATG
1 GGGAAATCACATAATTT-GTCTAAATACTTTGTCATTTAGTAAACAAGTTTTGGTCTTTAAAATA
* * **
20269934 AAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACCAACTTCTGAACTTTTCAAAC
65 AAAACTTATTTAAGTGAGAATTGTTTCTCTTGGCTCTTGGACCAACTTCCAAACTTTTCAAAC
20269997 TTTTACGAGT
Statistics
Matches: 110, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
139 30 0.27
140 15 0.14
141 65 0.59
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (138 bp):
GGGAAATCACATAATTTGTCTAAATACTTTGTCATTTAGTAAACAAGTTTTGGTCTTTAAAATAA
AAACTTATTTAAGTGAGAATTGTTTCTCTTGGCTCTTGGACCAACTTCCAAACTTTTCAAACATT
CCATTCTT
Found at i:20270532 original size:216 final size:213
Alignment explanation
Indices: 20269855--20270624 Score: 867
Period size: 215 Copynumber: 3.6 Consensus size: 213
20269845 AAACTTTTCA
* * * * *
20269855 AACATTCCATTCTTGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
1 AACATTCCATTATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * *
20269920 TGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACCAAC-TTCT
66 TGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTC-
** * * *
20269984 GAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-TTTCCTTACA-ATATTCGAGACGATCCA
130 GAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCCTTCCTTA-ATGTATTCAAGACGATCCA
20270047 TTCCTTCGAGCAATTTTCTG
194 TTCCTTCGAGCAATTTTCTG
** * * * *
20270067 AACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAGAACTTT
1 AACATTCCATTATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
** * * * *
20270132 TGGTCCCTGAATTAAATACTTATTTATGTGAGAATTGTTTCGCGTTTGGTT-TTGGGACGAACTT
66 TGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTT-GGACGAACTT
* * *
20270196 CCGAAC-ATGTCAAACTTTTACGAGTTCTTTTATAATTTCACTT-CAT-ATAGTATTCAAGACGA
128 TCGAACTA-GTCAAACTTTTACGAGTTCTTTTATAACTTC-CTTCCTTAAT-GTATTCAAGACGA
* *
20270258 TCCATTCCTTTGAGCAATTTTTTG
190 TCCATTCCTTCGAGCAATTTTCTG
* * * *
20270282 AACATTCCATTATCGGCAAACCGCATCATTTGGTCTGAATAGTTTGTCTTTTTGTAAA-AAGTTT
1 AACATTCCATTATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
20270346 TAGTTGTTTGAAATAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
66 T-GGTCTTTGAAATAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTT
* * * * * *
20270411 TCGAACTAGTCAATCTTTTATGAGTTCTTTCAGAACTTCGGTTCCTTAATGTATTCAAGATGATC
128 TCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTC-CTTCCTTAATGTATTCAAGACGATC
20270476 CATTCCTTCGAGCAATTTTCTG
192 CATTCCTTCGAGCAATTTTCTG
** * *
20270498 AACATTATATTATCGGGAAATAGCAGT-ATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTT
1 AACATTCCATTATCGGGAAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * *
20270562 TTGGTGTTTG-AATCAAAAATTTATTTACGTGAGAATTGTTTCACTTGGTTCTTGGACGAACTT
65 TTGGTCTTTGAAAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTT
20270625 CCAAACTTTT
Statistics
Matches: 468, Mismatches: 71, Indels: 36
0.81 0.12 0.06
Matches are distributed among these distances:
212 93 0.20
213 3 0.01
214 71 0.15
215 168 0.36
216 120 0.26
217 13 0.03
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (213 bp):
AACATTCCATTATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
TGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCG
AACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCCTTCCTTAATGTATTCAAGACGATCCATT
CCTTCGAGCAATTTTCTG
Found at i:20270756 original size:139 final size:139
Alignment explanation
Indices: 20270525--20270778 Score: 366
Period size: 139 Copynumber: 1.8 Consensus size: 139
20270515 AAATAGCAGT
* * * *
20270525 ATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGTGTTTGAATCAAAAATTTATTTAC
1 ATTTAGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTTAAATCAAAAACTTATTTAC
* *
20270590 GTGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACATTCCATTCTCGGGA
66 GTGAGAATTGTTTCACTTAGCTCTTGGACGAACTTCCAAACTTTTCAAACATTCCATTCTCGGGA
20270655 AATCACGTC
131 AATCACGTC
* * *
20270664 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAT-GAAAACTTATTTA
1 ATTTAGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTT-AAATCAAAAACTTATTTA
* * * **
20270728 CGTGAGAATTGTTTCTCTTAGCTGTTGGATGAACTTCTGAACTTTTCAAAC
65 CGTGAGAATTGTTTCACTTAGCTCTTGGACGAACTTCCAAACTTTTCAAAC
20270779 TTTTAAGAGT
Statistics
Matches: 100, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
139 97 0.97
140 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (139 bp):
ATTTAGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTTAAATCAAAAACTTATTTAC
GTGAGAATTGTTTCACTTAGCTCTTGGACGAACTTCCAAACTTTTCAAACATTCCATTCTCGGGA
AATCACGTC
Found at i:20270765 original size:782 final size:775
Alignment explanation
Indices: 20269070--20274678 Score: 3557
Period size: 782 Copynumber: 7.0 Consensus size: 775
20269060 CAATTTTCCG
* * * *
20269070 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAG--TGTCATTTTGTAAACAACTTT
1 AACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
** * * * * * * * *
20269133 TGGTCCAT-GAATTAAATACTTATTTATGTGGGAATTGTTTCACTTTTAGTTCTGGGACGAACTT
66 TGGTCTTTAAAATGAAA-ACTTATTTACGTGAGAATTGTTT--CTCTTAGCTGTTGGACGAACTT
* * * *
20269197 CCGAACTTGTCAAACTTTTACAAGTTCTTTTATAA-TTTCAGTTCCATA-AAGTATTCAAGACGA
128 CTGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTT--GTTCCTTACAA-TATTCAAGACGA
*
20269260 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGGTCGGGAAATCACATCATTTGGTCTAAATA
190 TCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTC-GGAAATCACATCATTTGGTCTAAATA
* * * * *
20269325 GTTTGTAATTTTGTAAAAAGGTTTTGTTGTTTGAATTAAAAACTCATTTACGTGAGAATTGTTTC
253 GTTTGTCATTTTGTAAAAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
** * * * * *
20269390 TCTCTTGGTTCTTGGATGAACTTTCGAACAACTAAAACTATTATGAGTTCTTTCATAACTTTGGT
317 TCT-TTGGTTCTTGGATGAACTTTCGAACATGTCAAACTTTTACGAGTTCTTTTATAACTTT-AT
* *
20269455 TCCT-TAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCTATTCTCGTGAA
380 TCATAT-A-GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTC-ATTATCG-GAA
* * * * *
20269519 ATAGCAACATTTGGTCTAAATAGTTTGTCGTTTTGGAATCAAGTTTTAGTCTTTG-ACTCAAAAA
441 ATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-AAAGTTTTAGTCTTTGAAAT-AAAAA
* * *
20269583 CTTATTTACGTGATTAATTG-TT-TCACTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTT
504 CTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTT
* * * * *
20269646 TACGAGTTCTTTTATAACTTCGATTCCTT-ATAGTATTCAAGACT-TTACATTCCTTCGAGCAAC
568 TATGAGTTCTTTTATAACTTCGGTTCCTTAAT-GTATTCAAGA-TGATCCATTCCTTCGAGCAAT
* * ** *
20269709 TTTCTAAAAATTCT-TTGCTAGGGAAATCGCATAATTT-TTCTAAATTCTTTGTCATTTAGTAAA
631 TTTCTAAAAATTCTATT-CTAGGGAAATAGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
20269772 CAAGTTTTGGTCTTTAAATTAAAAATTTATTTAAGTGAGAATTGTTTCTATCTTGGTTCTTGGAT
695 CAAGTTTTGGTCTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTC-A-CTTGGTTCTTGGAC
20269837 GAACTTCCAAACTTTTCA
758 GAACTTCCAAACTTTTCA
*
20269855 AACATTCCATTCTTGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
1 AACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* *
20269920 TGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACCAACTTCTG
66 TGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTAGCTGTTGGACGAACTTCTG
*
20269985 AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTT-TTCCTTACAATATTCGAGACGATCCATT
131 AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTTGTTCCTTACAATATTCAAGACGATCCATT
* *
20270049 CCTTCGAGCAATTTTCTGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGT
196 CCTTCGAGCAATTTT-TGAACATTCCATGCTCG-GAAATCACATCATTTGGTCTAAATAGTTTGT
** * * *
20270114 CATTTTGTAAAGAACTTTTGGTCCCTGAATTAAATACTTATTTATGTGAGAATTGTTTCGCGTTT
259 CATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-TTT
* *
20270179 GGTT-TTGGGACGAACTTCCGAACATGTCAAACTTTTACGAGTTCTTTTATAA-TTTCACTTCAT
322 GGTTCTT-GGATGAACTTTCGAACATGTCAAACTTTTACGAGTTCTTTTATAACTTT-A-TTCAT
* * **
20270242 ATAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTTGAACATTCCATTATCGGCAAACCGCA
384 ATAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATT-CATTATCGG-AAATAGCA
* * * *
20270307 TCATTTGGTCTGAATAGTTTGTCTTTTTGTAAAAAGTTTTAGTTGTTTGAAATAAAAACTTACTT
447 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGTTTTAG-TCTTTGAAATAAAAACTTATTT
* * *
20270372 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTCAATCTTTTATGAGTT
511 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTATGAGTT
* * * *
20270437 CTTTCAGAACTTCGGTTCCTTAATGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACA
576 CTTTTATAACTTCGGTTCCTTAATGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAAAA
* * * *
20270502 TTATATTATCGGGAAATAGCAGT-ATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGG
641 TTCTATTCTAGGGAAATAGCA-TAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* *
20270566 TGTTTGAATCAAAAATTTATTTACGTGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCCAAAC
705 TCTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCCAAAC
20270631 TTTTCA
770 TTTTCA
*
20270637 AACATTCCATTCTCGGGAAATCACGTCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
1 AACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
*
20270702 TGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTAGCTGTTGGATGAACTTCTG
66 TGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTAGCTGTTGGACGAACTTCTG
* *
20270767 AACTTTTCAAACTTTTAAGAGTTCTTTTATAACTTTGTTCCTTACAATATTTAAGACGATCCATT
131 AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTTGTTCCTTACAATATTCAAGACGATCCATT
* *
20270832 CCTTTGAGCAAGTTTTTAAACATTCCATGCTCCGGAAAT-ATCATCATTTGGTCTAAATAGTTTG
196 CCTTCGAGCAA-TTTTTGAACATTCCATGCT-CGGAAATCA-CATCATTTGGTCTAAATAGTTTG
*
20270896 TCATTTTGTAAACACCTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-TT
258 TCATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTT
* * * *
20270960 GGTTCTTGGATGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGATCCTTA
322 GGTTCTTGGATGAACTTTCGAACATGTCAAACTTTTACGAGTTCTTTTATAACTTT--ATTCATA
* * * * * * *
20271025 CAGTATTCAAGATGATACATTCCTTCGAGCAACTTTCTAAATATT-A-TAGCTCGGGAAATTGCA
385 TAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCATTA--TC-GGAAATAGCA
* * * * * * * *
20271088 TCATTT-TTCTAAATTGTTTGTCATTTTATAAACAAGTTTTGGTCCTTCAATTAAATACTTATTT
447 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGTTTTAGTCTTTGAAATAAAAACTTATTT
* *
20271152 ACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTTTCAAACTTTTACT-A
511 ACGTGAGAATTG-TT-TCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTA-TGA
* * * *
20271216 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCCAA
573 GTTCTTTTATAACTTCGGTTCCTTAATGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAA
* * * * * *
20271281 AGATTCGATGCTTGGGAAATCA-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATTTT
638 AAATTCTATTCTAGGGAAAT-AGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * * *
20271345 TGGTCCTTGAATTAAATAGTTATTTACGTGGGAATTG-TTCACTTTTGGTTCTGGGACGAACTTT
702 TGGTCTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTCAC--TTGGTTCTTGGACGAACTTC
* *
20271409 CGAACTTGTCA
765 CAAACTTTTCA
* * *** ** * * * * * *
20271420 AACTTTTACAAGTTCT-TTTATAATTTCAGTTC-TATA-ACTCAAGACG--ATCCATTCCTTCG-
1 AAC-ATT-CCA-TTCTCGGGA-AA--TCACATCATTTAGTCTAAATA-GTTTTTCATT--TT-GT
* * ** * *** * * * *
20271479 -AGCAATTTTTCGAACATTCCATGGTCGGGAAATCACGTCATTT-GGTCTAAATAGTTTGTTAT-
56 AAACAAGTTTT-GGTC-TT-TAAAAT---GAAA--AC-TTATTTACGT-GAGA-A--TTGTT-TC
* * *** *** * * *
20271541 TTTATCAAAAGGTTTTGTTGTTTGAA-TTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTG-
107 TCT-T----A-G--CTGTTGGACGAACTTCTGAA-CT-TTT-C---A-AA--CTTT-T-AC--GA
** * ** * * * **
20271604 GTTCTTGGACGAACTTTCG-AAC-TAGTCAA-ACTTTTATGA-GTTCTTTCATAACTTCG-GTTC
151 GTTCTTTTA-TAACTTT-GTTCCTTA--CAATA--TTCAAGACGATC---CATTCCTTCGAG---
** * * *
20271664 CTTAATGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTATGAACATTCTTTCTCGAGAAATA
204 C--AAT-T-TTTGA-AC-ATTCCA-TGC-TCG-G-AA----AT-CACA-TCATT-T-G-G---T-
* * * * * *
20271728 GCAGCATTTGGTCTAAATAGTTTATCATTTTCG-AAACTAGTTTTCGTCTTTGAATCAAAAATTT
246 ----C--------TAAATAGTTTGTCATTTT-GTAAA-AACTTTTGGTCTTTGAATTAAAAACTT
* * * * *
20271792 ATTTATGTGAGAATTGTTTCAC-TTGGTTCTTGGACGAAC-TTCTGAACTTTTCAAACAAGTTTT
297 ATTTACGTGAGAATTGTTTCTCTTTGGTTCTTGGATGAACTTTC-GAACATGTCAAAC---TTTT
** * * * * *
20271855 --G-GTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCGAGCAACTTC
358 ACGAGTTCTTTTATAACTT-TATT-CATATAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * * * *
20271917 CTAAAAATT--TTATGCTAAGGAAATCGTATAATTT-TTCTAAATTGTTTTTCATTTTGGAAACA
421 CTGAACATTCATTAT-C---GGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-A
* * * * *
20271979 AGTTTTGGTCTTTG-AATCAAAAACTTATTTACGTGATATTTG-TT-TCACTTGGTTCTTGGAAG
481 AGTTTTAGTCTTTGAAAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
* * * *
20272041 AACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACA-GTAATCAAG
545 AACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTA-ATGTATTCAAG
* * * * *** ** * *
20272105 ACT-ATACATTCCTTCGAGCAACTTTCTAAACATTGTACGATAGAAAAATCGCATCATATT--TC
609 A-TGATCCATTCCTTCGAGCAATTTTCTAAAAATTCTATTCTAGGGAAATAGCATAAT-TTGGTC
* * * * * *
20272167 TAAATTGTTTGTCATTTTGTAAACATGTTTTGGTCTTTAAATGAAAAACTTATTTACGTGAAAAT
672 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAATTTATTTACGTGAGAAT
* *
20272232 AGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCA
737 --TGT-T-TCACTTGGTTCTTGGACGAACTTCCAAACTTTTCA
*
20272275 AACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTTATTTTGTAAACAAGTTT
1 AACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* * * * * *
20272340 TGGTCTTTAAAAAGAAAACATATTTACGTGAGAATTGTTTCTCTTGGCCGTTGGACCAACTTCTA
66 TGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTAGCTGTTGGACGAACTTCTG
* * * *
20272405 AACTATTCAAACTTTTACGAATTCTTTTATAACTTTGTTCCCTACAAAATTCAAGACGATCCATT
131 AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTTGTTCCTTACAATATTCAAGACGATCCATT
* *
20272470 CCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGC
196 CCTTCGAGCAATTTTT-GAACATTCCATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTGT
* * * *
20272535 CATTATGTAAACAACTTTTGGTCATTCAATTAAATACTTATTTACGTGAGAATTGTTTCTC-TTG
259 CATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTG
* * * * * * * * *
20272599 GTTCTTGGACGAACTTTCAAACTTGTAAAACTTTTACGAGTTCTATTATAACTTCGGATCCTTAC
323 GTTCTTGGATGAACTTTCGAACATGTCAAACTTTTACGAGTTCTTTTATAACTT--TATTCATAT
* * * * * * * *
20272664 AGTATTCAAGACGATACATTCCTTCGAGCAACTTTATAAATATT-ATATGCTCGGGAAATTGCTT
386 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCAT-T-ATC-GGAAATAGCAT
* * * * * * *
20272728 CATTT-TTCTAAATTGTTTATCATTTTATAAACAAGTTTTGGTCCTT-AAATTAAATACTTATTT
448 CATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGTTTTAGTCTTTGAAA-TAAAAACTTATTT
* * *
20272791 ACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTTTCAAACTTTTACGAG
511 ACGTGAGAATTG-TT-TCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTATGAG
* * * *
20272856 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCGTCGAGCAATTTTCCAAA
574 TTCTTTTATAACTTCGGTTCCTTAATGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAA
* * * * * * * *
20272921 GACTCGATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
639 AATTCTATTCTAGGGAAATAGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * * * * *
20272986 GTCCTTGAATTAAATAGTTATTTACGTGGGAATTGTTTCGCTTTTGGTTCTGGGACGAACTTTCG
704 GTCTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTCAC--TTGGTTCTTGGACGAACTTCCA
*
20273051 AACTTGTCA
767 AACTTTTCA
* * *** ** * * * *
20273060 AACTTTTACAAGTTCT-TTTATAATTTCAGTTC-TATAACTCAAGACGATCCA-TTCCTTCGAGC
1 AAC-ATT-CCA-TTCTCGGGA-AA--TCACATCAT-TTAGTCTA-A--AT--AGTT--TT---TC
* * * * * * * *
20273122 AATTTT-TCAAAC-A-TTCCATGGTC--GAGAAAT--CACCTCATTT-GGTCTAAATAGTTTGTT
49 -ATTTTGT-AAACAAGTT--TTGGTCTTTA-AAATGAAAACTTATTTACGT-GAGA-A--TTGTT
* **** ** *** ** * *
20273179 AT-T-TTATCAAAAGGTTTTGTTGTT-TGAA--TTAAAAACTTATTTACGTGAGAATTGTTTCTC
105 -TCTCTTAGCTGTTGG--ACGAACTTCTGAACTTTTCAAAC-T-TTTAC--GAG--TTCTTT-TA
**
20273239 T--CTTTGTT-CTTGGACGAACT-TTCGAACTAGTCAAACTTTTATGAGTTCTTTCATAACTTCG
160 TAACTTTGTTCCTT--AC-AA-TATTC--A--AG----AC------GA--TC---CATTCCTTCG
** * * *
20273300 -GTTCCTTAATGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTCTGAACATTC-TTT-CTCG
202 AG---C--AAT-T-TTTGA-AC-ATTCCA-TGC-TCG-G-AA--ATC---ACA-TCATTTGGTC-
* * *
20273361 GGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTAAAAACACGTTTTGGTCTTTTAATCAA
247 -TAAAT---AG--TTT-GTC---AT--TTTG------T-AAAA-AC-TTTTGGTCTTTGAATTAA
* * * * *
20273426 AAACTTATTTATGTGAGAATTGTTTCAC-TTGGTTCTTGGACGAAC-TTCTGAACTTTTCAAAAA
291 AAACTTATTTACGTGAGAATTGTTTCTCTTTGGTTCTTGGATGAACTTTC-GAACATGTC---AA
* * ** * * *
20273489 AGTTTT--G-GCTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCGAGC
352 ACTTTTACGAGTTCTTTTATAACTT-TATT-CATATAGTATTCAAGACGATCCATTCCTTCGAGC
* * ** * * * * * * * * *
20273551 AACTTCCAAAAAATTTGATGCTA-GGGAAATCGTATAATTT--TCTAAATTGTTTTTCATTTTGG
415 AATTTTCTGAACA-TTCAT--TATCGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
20273613 AAACAAGTTTTGGTCTTTG-AATCAAAAACTTATTTACGTGATATTTG-TT-TCACTTGGTTCTT
477 AAA-AAGTTTTAGTCTTTGAAAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * *
20273675 GGAAGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACA-GTAA
540 GGATGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTA-ATGTAT
* * * * * *** ** * *
20273739 TCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTGTACGATAGAAAAATCGCATCATATT
604 TCAAGATGATCCATTCCTTCGAGCAATTTTCTAAAAATTCTATTCTAGGGAAATAGCATAAT-TT
* * *
20273804 --TCTAAATTGTTTGTCATTTTGTAAACATGTTTTGGTCTTTAAATTAAAAACTTT-TTTACGTG
668 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA-TTTATTTACGTG
* * *
20273866 AAAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCA
732 AGAAT--TGT-T-TCACTTGGTTCTTGGACGAACTTCCAAACTTTTCA
*
20273914 AACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTTATTTTGTAAACAAGTTT
1 AACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* ** * * *
20273979 TGGTCTTTAAAAAGAAAACACATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACCAACTTCTA
66 TGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTAGCTGTTGGACGAACTTCTG
* * * *
20274044 AACTATTCAAACTTTTACGAATTCTTTTATAACTTTGTTCCTTACAAAATTCAAGACGATCCACT
131 AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTTGTTCCTTACAATATTCAAGACGATCCATT
* * *
20274109 CCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGC
196 CCTTCGAGCAATTTT-TGAACATTCCATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTGT
* * * **
20274174 CATTATGTAAACAACTTTTGGTCATTCAATTAAATGCTTATTTACGTGAGAATTGTTTCTC-TTG
259 CATTTTGTAAA-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTG
* * * ** * *
20274238 GTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAC
323 GTTCTTGGATGAACTTTCGAACATGTCAAACTTTTACGAGTTCTTTTATAACTT-TATT-CATAT
* * * * * *
20274303 AGTATTCAAGACGATACATTCCTTCGAGCAACTTTATAAATATT-A-TATGCTTGGGAAATTGCA
386 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCATTAT-C---GGAAATAGCA
* * * * * *
20274366 TCATTT-TTCTAAATTGTTCGTCATTTTATAAACAAGTTTTGGTCCTT-AAATTAAAAACTTATT
447 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGTTTTAGTCTTTGAAA-TAAAAACTTATT
* * *
20274429 TACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTTTCAAACTTTTACGA
510 TACGTGAGAATTG-TT-TCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTATGA
*** * * *
20274494 GTTCTTTTATAACTTCGG-TAAATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCAA
573 GTTCTTTTATAACTTCGGTTCCTTAATGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAA
* * * * * * *
20274558 AGATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
638 AAATTCTATTCTAGGGAAATAGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * *
20274623 GGTCTTTGAATTATATATTTATTTTCGTGAGAATTGTTTCTCTTTTGGTTCTTGGA
703 GGTCTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTCAC--TTGGTTCTTGGA
20274679 TTAACTTCTG
Statistics
Matches: 3824, Mismatches: 638, Indels: 725
0.74 0.12 0.14
Matches are distributed among these distances:
776 2 0.00
778 7 0.00
779 7 0.00
780 53 0.01
781 233 0.06
782 821 0.21
783 474 0.12
784 106 0.03
785 193 0.05
786 256 0.07
787 114 0.03
788 20 0.01
789 6 0.00
790 11 0.00
791 3 0.00
792 4 0.00
793 2 0.00
794 8 0.00
795 12 0.00
796 5 0.00
797 10 0.00
798 17 0.00
799 14 0.00
800 35 0.01
801 12 0.00
802 8 0.00
803 10 0.00
804 10 0.00
805 11 0.00
806 12 0.00
807 9 0.00
808 8 0.00
809 14 0.00
810 11 0.00
811 6 0.00
812 5 0.00
813 3 0.00
814 4 0.00
815 8 0.00
816 9 0.00
817 10 0.00
818 16 0.00
819 16 0.00
820 17 0.00
821 11 0.00
822 8 0.00
823 2 0.00
824 12 0.00
825 1 0.00
826 8 0.00
827 5 0.00
828 9 0.00
829 7 0.00
830 13 0.00
831 8 0.00
832 11 0.00
833 7 0.00
834 8 0.00
835 11 0.00
836 9 0.00
837 12 0.00
838 9 0.00
839 37 0.01
840 19 0.00
841 9 0.00
842 12 0.00
843 11 0.00
844 8 0.00
845 4 0.00
846 6 0.00
848 4 0.00
849 11 0.00
850 12 0.00
851 14 0.00
852 134 0.04
853 244 0.06
854 44 0.01
855 38 0.01
856 161 0.04
857 145 0.04
858 131 0.03
859 7 0.00
860 2 0.00
861 8 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (775 bp):
AACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
TGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTAGCTGTTGGACGAACTTCTG
AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTTGTTCCTTACAATATTCAAGACGATCCATT
CCTTCGAGCAATTTTTGAACATTCCATGCTCGGAAATCACATCATTTGGTCTAAATAGTTTGTCA
TTTTGTAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGGTT
CTTGGATGAACTTTCGAACATGTCAAACTTTTACGAGTTCTTTTATAACTTTATTCATATAGTAT
TCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCATTATCGGAAATAGCATCATTTGGT
CTAAATAGTTTGTCATTTTGTAAAAAGTTTTAGTCTTTGAAATAAAAACTTATTTACGTGAGAAT
TGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAAC
TTCGGTTCCTTAATGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAAAATTCTATTCTA
GGGAAATAGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
AAAATTTATTTACGTGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCCAAACTTTTCA
Found at i:20271004 original size:213 final size:215
Alignment explanation
Indices: 20270631--20272277 Score: 1686
Period size: 213 Copynumber: 7.7 Consensus size: 215
20270621 ACTTCCAAAC
* * * * *
20270631 TTTTCAAACATTCCATTCTCGGGAAATCA-CGTCATTTAGTCTAAATAGTTTTTCATTTTGTAAA
1 TTTTTAAACATTCCATGCTCGGGAAATCATCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * * * *
20270695 CAAGTTTTGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTT-TCTCTTAGCTGTTGGATG
66 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACG
* * * * * *
20270759 AAC-TTCTGAACTTTTCAAACTTTTAAGAGTTCTTTTATAACTT-TGTTCCTTACAATATTTAAG
131 AACTTTC-AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
*
20270822 ACGATCCATTCCTTTGAGCAA
195 ACGATCCATTCCTTCGAGCAA
*
20270843 GTTTTTAAACATTCCATGCTCCGGAAAT-ATCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
1 -TTTTTAAACATTCCATGCTCGGGAAATCATCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
** *
20270907 ACACCTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT-TCTCTTGGTTCTTGGAT
65 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGAC
* *
20270971 GAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGATCCTTACAGTATTCAAG
130 GAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
* *
20271036 ATGATACATTCCTTCGAGCAA
195 ACGATCCATTCCTTCGAGCAA
* * * * *
20271057 CTTTCTAAATATT--ATAGCTCGGGAAAT--TGCATCATTT-TTCTAAATTGTTTGTCATTTTAT
1 -TTTTTAAACATTCCAT-GCTCGGGAAATCAT-CATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
20271117 AAACAAGTTTTGGTCCTTCAATTAAATACTTATTTACGTGAGAATTGTTTCTCTCTCTTGGTTCT
63 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG--T-TCTCTCTTGGTTCT
* * * * *
20271182 TGGATGAACTTCCAAACTTTTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
125 TGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTAT
*
20271247 TCAAGACGATCCATTCCTTTGAGCAA
190 TCAAGACGATCCATTCCTTCGAGCAA
* * * *
20271273 TTTTCCAAAGATTCGATGCTTGGGAAATCA-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
1 TTTT-TAAACATTCCATGCTCGGGAAATCATCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * * * *
20271337 ACAATTTTTGGTCCTTGAATTAAATAGTTATTTACGTGGGAATTGTTCACTTTTGGTTCTGGGAC
65 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGAC
* * * * * *
20271402 GAACTTTCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATTTCAGTT-C-TATA--ACTCAAG
130 GAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
20271463 ACGATCCATTCCTTCGAGCAA
195 ACGATCCATTCCTTCGAGCAA
* * * * *
20271484 TTTTTCGAACATTCCATGGTCGGGAAATCA-CGTCATTTGGTCTAAATAGTTTGTTATTTTATCA
1 TTTTT-AAACATTCCATGCTCGGGAAATCATCATCATTTGGTCTAAATAGTTTGTCATTTTGT-A
* * * *
20271548 AA-AGGTTTTGTTGTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
64 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGG
* * * *
20271612 ACGAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTCATAACTTCGGTTCCTTA-ATGTATTC
128 ACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACA-GTATTC
20271676 AAGACGATCCATTCCTTCGAGCAA
192 AAGACGATCCATTCCTTCGAGCAA
* * * * * * *
20271700 TTTTATGAACATT-CTTTCTCGAGAAAT-AGCAGCATTTGGTCTAAATAGTTTATCATTTTCG-A
1 TTTT-TAAACATTCCATGCTCGGGAAATCATCATCATTTGGTCTAAATAGTTTGTCATTTT-GTA
* * * * * *
20271762 AACTAGTTTTCGTCTTTGAATCAAAAATTTATTTATGTGAGAATTGTT-TCACTTGGTTCTTGGA
64 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGA
* *
20271826 CGAAC-TTCTGAACTTTTCAAACAAGTTTT--G-GTTCTTTTATAACTTCGGTTCCTTACAGTAT
129 CGAACTTTC-AAACTTGTCAAAC---TTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTAT
*
20271887 TCAAGACGATACATTCCTTCGAGCAA
190 TCAAGACGATCCATTCCTTCGAGCAA
** * ** ** * * * * * *
20271913 CTTCCTAAAAATTTTATGCTAAGGAAATCGT-ATAATTT-TTCTAAATTGTTTTTCATTTTGGAA
1 -TTTTTAAACATTCCATGCTCGGGAAATCATCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * *
20271976 ACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGATATTTGTT-TCACTTGGTTCTTGGAA
65 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGAC
* * *
20272040 GAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACAGTAATCAAG
130 GAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAG
* *
20272105 ACTATACATTCCTTCGAGCAA
195 ACGATCCATTCCTTCGAGCAA
* ** * * * ** * *
20272126 CTTTCTAAACATTGTACGATAGAAAAATC-GCATCATATT--TCTAAATTGTTTGTCATTTTGTA
1 -TTTTTAAACATTCCATGCTCGGGAAATCATCATCAT-TTGGTCTAAATAGTTTGTCATTTTGTA
* * * * *
20272188 AACATGTTTTGGTCTTTAAATGAAAAACTTATTTACGTGAAAATAGTTTCTCTCTCTTGGTTCTT
64 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT--TGT-TCTCTCTTGGTTCTT
* *
20272253 GGACGAACTTCCAAACTTTTCAAAC
126 GGACGAACTTTCAAACTTGTCAAAC
20272278 ATTCCATTCT
Statistics
Matches: 1220, Mismatches: 168, Indels: 88
0.83 0.11 0.06
Matches are distributed among these distances:
210 4 0.00
211 113 0.09
212 134 0.11
213 492 0.40
214 78 0.06
215 136 0.11
216 144 0.12
217 54 0.04
218 65 0.05
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
TTTTTAAACATTCCATGCTCGGGAAATCATCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACG
AACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
CGATCCATTCCTTCGAGCAA
Found at i:20271248 original size:998 final size:995
Alignment explanation
Indices: 20268674--20271635 Score: 3178
Period size: 998 Copynumber: 3.0 Consensus size: 995
20268664 GTATCATTTT
* * * * *
20268674 TCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGT-TTTAAATTAAAAACTTATTAACGTGAGA
1 TCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAATGAAAACTTATTTACGTGAGA
* * * ** * *
20268738 ATTGTTTATCTTTCTTGGTTCTTGGACGAGCTTCCAAAGTTTTCAAACTTTTATGAGTTCTTTTA
66 ATTG-TT-TC--TCTTAG-T-TTGGATGAACTTCTGAACTTTTCAAACTTTTAAGAGTTCTTTTA
* * * * *
20268803 TAATTACGGTTCCTTA-AAGTATTCAAGACGATCAATTCCTTTGAGCAATTTTTGAACATTCGAT
125 TAATT--TGTTCCTTACAA-TATTTAAGACGATCCATTCCTTTGAGCAATTTTTAAACATTCCAT
* * *
20268867 TCTCGGGAAAT-TACATTATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTAGCTCTTTA
187 TCTCGGGAAATAT-CATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTA
* * * * *
20268931 AAACGAAAACTTATCTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTTTGGACATTTTA
251 AAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTTCGAAC-TTTCA
* * *
20268996 AACTTTTACGAGTTCTTTTATAAC-TTGGTTACTTATAGTATTCAAGACGATCGATTCCTTCGAT
315 AACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTACAGTATTCAAGACGATC-ATTCCTTCGAG
* *
20269060 CAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAG--TGTCATTTTGT
379 CAATTTTCTGAACATT-CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
20269123 AAACAACTTTTGGTCCATGAATTAAATACTTATTTATGTGGGAATTGTTTCACTTTTAGTTCTGG
443 AAACAACTTTTGGTCCATGAATTAAATACTTATTTATGTGAGAATTGTTTCACTTTTGGTTCTTG
20269188 GACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATTTCAGTTCCATAAAGTATTC
508 GACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATTTCAGTTCCATAAAGTATTC
* *
20269253 AAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGGTCGGGAAATCACATCATTTGGT
573 AAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGATCGGGAAATCACATCATTTGGT
* *
20269318 CTAAATAGTTTGTAATTTTGTAAAAAGGTTTTGTTGTTTGAATTAAAAACTCATTTACGTGAGAA
638 CTAAATAGTTTGTCATTTTGTAAAAA-GTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAA
* * * *
20269383 TTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACAACTAAAACTATTATGAGTTCTTTCATAA
702 TTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTCATAA
* *
20269448 CTTTGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCTATTCT
767 CTTCGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCTATTAT
* ** * * * * * *
20269513 CGTGAAATAGCAACATTTGGTCTAAATAGTTTGTCGTTTTGGAATCAAGTTTTAGTCTTTGACTC
832 CGGGAAATAGCAGTATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGTGTTTGAATC
* * *
20269578 AAAAACTTATTTACGTGATTAATTGTTTCACTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
897 AAAAATTTATTTACGTGA-GAATTGTTTCACTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
* * *** * *
20269643 TTTTACGAGTTCTTTTATAACTTCGATTCCTTATAG
961 TATTACCAGTTCTGGGATAAC-TCGAGTCATTATAG
* * * * * * *** *
20269679 TATTCAAGACTTTACATTCCTTCGAGCAACTTTCTAAA-AA-TTCTTTG-CTAGGGAAATCGCAT
1 T-CT-AA-A---TA-GTT--TT---TC-ATTTTGTAAACAAGTT-TTGGTCT-TTAAAAT-G-AA
* * * * * **
20269741 AA-TT-TTT-C-T-A-AATTCTTTGTC--A-TTTAG-TAAACAAGTTTTGGTC-TTT-AAA--TT
49 AACTTATTTACGTGAGAATTGTTTCTCTTAGTTTGGATGAAC---TTCTGAACTTTTCAAACTTT
* * * * * * * * * ** * *
20269792 AAAAATTTATTTAAGTGAGAATTGTTTC-TATC-TTGGTTCTTGGATGA-AC-TTCC----A--A
111 TAAGAGTTCTTTTA-T-A-ATTTGTTCCTTA-CAAT-ATT-TAAGACGATCCATTCCTTTGAGCA
* *
20269847 ACTTTTCAAACATTCCATTCTTGGGAAATCA-CATCATTTAGTCTAAATAGTTTTTCATTTTGTA
170 A-TTTTTAAACATTCCATTCTCGGGAAAT-ATCATCATTTAGTCTAAATAGTTTTTCATTTTGTA
20269911 AACAAGTTTTGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGAC
233 AACAAGTTTTGGTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGAC
* * *
20269976 CAAC-TTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTT--TTCCTTACAATATTCGA
298 GAACTTTC-GAAC-TTTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTACAGTATTCAA
* *
20270038 GACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCT
361 GACGAT-CATTCCTTCGAGCAATTTTCTGAACATT-CATGCTCGGGAAATCGCATCATTTGGTCT
* *
20270103 AAATAGTTTGTCATTTTGTAAAGAACTTTTGGTCCCTGAATTAAATACTTATTTATGTGAGAATT
424 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCCATGAATTAAATACTTATTTATGTGAGAATT
* * * *
20270168 GTTTCGCGTTTGGTT-TTGGGACGAACTTCCGAACATGTCAAACTTTTACGAGTTCTTTTATAAT
489 GTTTCACTTTTGGTTCTT-GGACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAAT
* * * *
20270232 TTCACTT-CATATAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTTGAACATTCCATTATC
553 TTCAGTTCCATAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGATC
* * * * * *
20270296 GGCAAACCGCATCATTTGGTCTGAATAGTTTGTCTTTTTGTAAAAAGTTTTAGTTGTTTGAAATA
618 GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGTTTT-GTTGTTTGAATTA
* *
20270361 AAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTCAATC
682 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTCAAAC
* *
20270426 TTTTATGAGTTCTTTCAGAACTTCGGTTCCTTAATGTATTCAAGATGATCCATTCCTTCGAGCAA
747 TTTTATGAGTTCTTTCATAACTTCGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGCAA
*
20270491 TTTTCTGAACATTATATTATCGGGAAATAGCAGTATTTGGTCTAAATAGTTTGTCATTTTGAAAA
812 TTTTCTGAACATTCTATTATCGGGAAATAGCAGTATTTGGTCTAAATAGTTTGTCATTTTGAAAA
20270556 CAAGTTTTGGTGTTTGAATCAAAAATTTATTTACGTGAGAATTGTTTCACTTGGTTCTTGGACGA
877 CAAGTTTTGGTGTTTGAATCAAAAATTTATTTACGTGAGAATTGTTTCACTTGGTTCTTGGACGA
*
20270621 ACTTCCAAACTTTTCAAAC-ATT-CCA-TTCTCGGGA-AA-TC-ACGTCATT-TAG
942 ACTTCCAAACTTGTCAAACTATTACCAGTTCT-GGGATAACTCGA-GTCATTATAG
20270670 TCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAATGAAAACTTATTTACGTGAGA
1 TCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAATGAAAACTTATTTACGTGAGA
20270735 ATTGTTTCTCTTAGCTGTTGGATGAACTTCTGAACTTTTCAAACTTTTAAGAGTTCTTTTATAAC
66 ATTGTTTCTCTTAG-T-TTGGATGAACTTCTGAACTTTTCAAACTTTTAAGAGTTCTTTTATAA-
* *
20270800 TTTGTTCCTTACAATATTTAAGACGATCCATTCCTTTGAGCAAGTTTTTAAACATTCCATGCTCC
128 TTTGTTCCTTACAATATTTAAGACGATCCATTCCTTTGAGCAA-TTTTTAAACATTCCATTCTCG
* * ** * * *
20270865 GGAAATATCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACACCTTTTGGTCTTTGAATTAA
192 GGAAATATCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAATGA
* * * *
20270930 AAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGATGAACTTTCAAACTTGTCAAACTTT
257 AAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTTCGAACTT-TCAAACTTT
* * *
20270995 TACGAGTTCTTTTATAACTTTGGATCCTTACAGTATTCAAGATGATACATTCCTTCGAGCAACTT
321 TACGAGTTCTTTTATAACTTTGGTTCCTTACAGTATTCAAGACGAT-CATTCCTTCGAGCAATTT
* * * * * *
20271060 TCTAAATATT-ATAGCTCGGGAAATTGCATCATTT-TTCTAAATTGTTTGTCATTTTATAAACAA
385 TCTGAACATTCAT-GCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * *
20271123 GTTTTGGTCCTTCAATTAAATACTTATTTACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGATG
449 CTTTTGGTCCATGAATTAAATACTTATTTATGTGAGAATTGTTTCACT-T-TTGGTTCTTGGACG
* * * * * *
20271188 AACTTCCAAACTTTTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
512 AACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGA
* * * * * *
20271253 CGATCCATTCCTTTGAGCAATTTTCCAAAGATTCGATGCTTGGGAAATCACATCATTTGGTCTAA
577 CGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGATCGGGAAATCACATCATTTGGTCTAA
* * ** * * *
20271318 ATAGTTTGTCATTTTGTAAACAATTTTTGGTCCTTGAATTAAATAGTTATTTACGTGGGAATTG-
642 ATAGTTTGTCATTTTGTAAA-AAGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * ** * *
20271382 TTCACTTTTGGTTCTGGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATTTC
706 TTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTCATAACTTC
* * * * **
20271447 AGTT-C-T-AT-AACTCAAGACGATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGGTCGG
771 GGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCTATTATCGG
* * *
20271507 GAAAT--CACGTCATTTGGTCTAAATAGTTTGTTATTTT-ATCAAA-AGGTTTTGTTGTTTGAAT
835 GAAATAGCA-GT-ATTTGGTCTAAATAGTTTGTCATTTTGA--AAACAAGTTTTGGTGTTTGAAT
* * * * *
20271568 TAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAA
896 CAAAAATTTATTTACGTGAGAATTG-TT-TCACTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
20271633 ACT
959 ACT
20271636 TTTATGAGTT
Statistics
Matches: 1618, Mismatches: 250, Indels: 187
0.79 0.12 0.09
Matches are distributed among these distances:
977 3 0.00
978 11 0.01
979 13 0.01
980 5 0.00
981 1 0.00
982 3 0.00
983 9 0.01
984 2 0.00
985 3 0.00
986 5 0.00
987 10 0.01
988 18 0.01
989 14 0.01
990 12 0.01
991 7 0.00
992 10 0.01
993 114 0.07
994 16 0.01
995 255 0.16
996 25 0.02
997 281 0.17
998 583 0.36
999 125 0.08
1003 17 0.01
1004 9 0.01
1005 12 0.01
1006 7 0.00
1007 4 0.00
1008 1 0.00
1010 2 0.00
1011 1 0.00
1012 3 0.00
1013 2 0.00
1014 5 0.00
1015 1 0.00
1016 3 0.00
1017 8 0.00
1018 13 0.01
1019 2 0.00
1020 3 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (995 bp):
TCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAATGAAAACTTATTTACGTGAGA
ATTGTTTCTCTTAGTTTGGATGAACTTCTGAACTTTTCAAACTTTTAAGAGTTCTTTTATAATTT
GTTCCTTACAATATTTAAGACGATCCATTCCTTTGAGCAATTTTTAAACATTCCATTCTCGGGAA
ATATCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAATGAAAAC
TTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACGAACTTTCGAACTTTCAAACTTTTACGA
GTTCTTTTATAACTTTGGTTCCTTACAGTATTCAAGACGATCATTCCTTCGAGCAATTTTCTGAA
CATTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
TCCATGAATTAAATACTTATTTATGTGAGAATTGTTTCACTTTTGGTTCTTGGACGAACTTCCGA
ACTTGTCAAACTTTTACAAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCCATT
CCTTTGAGCAATTTTTCGAACATTCCATGATCGGGAAATCACATCATTTGGTCTAAATAGTTTGT
CATTTTGTAAAAAGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
GTTCTTGGATGAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTCATAACTTCGGTTCCTTAA
TGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCTATTATCGGGAAATAGCAGT
ATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGTGTTTGAATCAAAAATTTATTTAC
GTGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTATTACCAGTTCTGG
GATAACTCGAGTCATTATAG
Found at i:20272595 original size:356 final size:352
Alignment explanation
Indices: 20271952--20272622 Score: 825
Period size: 356 Copynumber: 1.9 Consensus size: 352
20271942 GTATAATTTT
* ** * *
20271952 TCTAAATTGTTTTTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGATA
1 TCTAAATAGTTTTTCATTTTGGAAACAAGTTTTGGTCTTTGAAAAAAAAACATATTTACGTGAGA
* * * * *
20272017 TTTGTTTCACTTGGTTCTTGGAAGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAGC
66 ATTGTTTCACTTGGTCCTTGGAACAACTTCCAAACTTGTCAAACTTTTACGAATTCTTTTATAAC
* * * **
20272082 TTCGGTTCCTTACAGTAATCAAGACTATACATTCCTTCGAGCAACTTTCTAAACATTGTACGATA
131 TTCGGTTCCCTACAGAAATCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCCACGATA
* * * ** *
20272147 GAAAAATCGCATCATATTTCTAAATTGTTTGTCATTTTGTAAACATGTTTTGGTCTTTAAATGAA
196 GAAAAATCGCATCATATTTCTAAATAGTTTGCCATTATGTAAACAACTTTTGGTCATTAAATGAA
20272212 AAACTTATTTACGTGAAAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAA
261 AAACTTATTTACGTGAAAATAG--T-T-TCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAA
20272277 CATTCCATTCTCGGGAAATCACATCATTTAG
322 CATTCCATTCTCGGGAAATCACATCATTTAG
* *
20272308 TCTAAATAGTTTTTTATTTTGTAAACAAGTTTTGGTCTTT-AAAAAGAAAACATATTTACGTGAG
1 TCTAAATAGTTTTTCATTTTGGAAACAAGTTTTGGTCTTTGAAAAA-AAAACATATTTACGTGAG
* * *
20272372 AATTGTTTCTCTTGG-CCGTTGGACCAACTTCTAAACTAT-TCAAACTTTTACGAATTCTTTTAT
65 AATTGTTTCACTTGGTCC-TTGGAACAACTTCCAAACT-TGTCAAACTTTTACGAATTCTTTTAT
* * * *
20272435 AACTT-TGTTCCCTACA-AAATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTCGAACATTCCA
128 AACTTCGGTTCCCTACAGAAA-TCAAGACGATACATTCCTTCGAGCAACTTTCT-AAACATTCCA
* * * **
20272497 TGCTCGGGAAATCGCATCAT-TTGGTCTAAATAGTTTGCCATTATGTAAACAACTTTTGGTCATT
191 CGATAGAAAAATCGCATCATATT--TCTAAATAGTTTGCCATTATGTAAACAACTTTTGGTCATT
* * * * * *
20272561 CAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAAACTT
254 AAATGAAAAACTTATTTACGTGAAAATAGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTT
20272623 GTAAAACTTT
Statistics
Matches: 267, Mismatches: 41, Indels: 18
0.82 0.13 0.06
Matches are distributed among these distances:
352 30 0.11
353 1 0.00
354 9 0.03
355 59 0.22
356 167 0.63
357 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (352 bp):
TCTAAATAGTTTTTCATTTTGGAAACAAGTTTTGGTCTTTGAAAAAAAAACATATTTACGTGAGA
ATTGTTTCACTTGGTCCTTGGAACAACTTCCAAACTTGTCAAACTTTTACGAATTCTTTTATAAC
TTCGGTTCCCTACAGAAATCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTCCACGATA
GAAAAATCGCATCATATTTCTAAATAGTTTGCCATTATGTAAACAACTTTTGGTCATTAAATGAA
AAACTTATTTACGTGAAAATAGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACATT
CCATTCTCGGGAAATCACATCATTTAG
Found at i:20272650 original size:213 final size:214
Alignment explanation
Indices: 20272269--20273916 Score: 1717
Period size: 213 Copynumber: 7.7 Consensus size: 214
20272259 ACTTCCAAAC
* * * * *
20272269 TTTTCAAACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTTATTTTGTAAAC
1 TTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
** * * *
20272334 AAGTTTTGGTCTTT-AAAAAGAAAACATATTTACGTGAGAATTGTTTCTCTTGG-CCGTTGGACC
66 AAGTTTTGGTCTTTGAATTA-AAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTC-TTGGACG
* * * **
20272397 AAC-TTCTAAACTAT-TCAAACTTTTACGAATTCTTTTATAACTT-TGTTCCCTACAAAATTCAA
129 AACTTTC-AAACT-TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAA
20272459 GACGATCCATTCCTTCGAGCAAT
192 GACGATCCATTCCTTCGAGCAAT
* * *
20272482 TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGCCATTATGTAAAC
1 TTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * *
20272547 AACTTTTGGTCATTCAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAA
66 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAA
* * *
20272612 CTTTCAAACTTGTAAAACTTTTACGAGTTCTATTATAACTTCGGATCCTTACAGTATTCAAGACG
131 CTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACG
*
20272677 ATACATTCCTTCGAGCAACT
196 ATCCATTCCTTCGAGCAA-T
* * ** * * * * * *
20272697 TTAT-AAATATTATATGCTCGGGAAATTGCTTCATTT-TTCTAAATTGTTTATCATTTTATAAAC
1 TTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * *
20272760 AAGTTTTGGTCCTTAAATTAAATACTTATTTACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGA
66 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG--T-T-TCTCTTGGTTCTTGGA
* * * *
20272825 TGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
127 CGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAA
*
20272890 GACGATCCATTCCGTCGAGCAAT
192 GACGATCCATTCCTTCGAGCAAT
* * * * *
20272913 TTTCCAAAGACTCGATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
1 TTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * * * *
20272978 AACTTTTGGTCCTTGAATTAAATAGTTATTTACGTGGGAATTGTTTCGCTTTTGGTTCTGGGACG
66 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT--CTCTTGGTTCTTGGACG
* * * * * *
20273043 AACTTTCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATTTCAGTT-C-TATA--ACTCAAGA
129 AACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
20273104 CGATCCATTCCTTCGAGCAAT
194 CGATCCATTCCTTCGAGCAAT
* * * * * *
20273125 TTTTCAAACATTCCATGGTCGAGAAATCACCTCATTTGGTCTAAATAGTTTGTTATTTTATCAAA
1 TTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAA
* * * *
20273190 -AGGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGAC
65 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGAC
* * * *
20273254 GAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTCATAACTTCGGTTCCTTA-ATGTATTCAA
128 GAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACA-GTATTCAA
20273318 GACGATCCATTCCTTCGAGCAA-
192 GACGATCCATTCCTTCGAGCAAT
* * * * * **
20273340 TTTTCTGAACATT-CTTTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTAAAAA
1 TTTTC-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * *
20273404 CACGTTTTGGTCTTTTAATCAAAAACTTATTTATGTGAGAATTGTTTCACTTGGTTCTTGGACGA
65 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* * * *
20273469 AC-TTCTGAACTTTTCAAAAAAGTTTT--G-GCTCTTTTATAACTTCGGTTCCTTACAGTATTCA
130 ACTTTC-AAACTTGTC---AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCA
*
20273530 AGACGATACATTCCTTCGAGCAA-
191 AGACGATCCATTCCTTCGAGCAAT
* * * ** * * * * * *
20273553 CTTCCAAAAAATTTGATGCTAGGGAAATCGTATAATTT--TCTAAATTGTTTTTCATTTTGGAAA
1 TTTTC-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * *
20273616 CAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGATATTTGTTTCACTTGGTTCTTGGAAGA
65 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGA
* * *
20273681 ACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACAGTAATCAAGAC
130 ACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
*
20273746 GATACATTCCTTCGAGCAA-
195 GATCCATTCCTTCGAGCAAT
* ** * * * ** *
20273765 CTTTCTAAACATTGTACGATAGAAAAATCGCATCATATT--TCTAAATTGTTTGTCATTTTGTAA
1 TTTTC-AAACATTCCATGCTCGGGAAATCGCATCAT-TTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * *
20273828 ACATGTTTTGGTCTTTAAATTAAAAACTTTTTTACGTGAAAATAGTTTCTCTCTCTTGGTTCTTG
64 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT--TGT-T-TCTCTTGGTTCTTG
* *
20273893 GACGAACTTCCAAACTTTTCAAAC
125 GACGAACTTTCAAACTTGTCAAAC
20273917 ATTCCATTCT
Statistics
Matches: 1210, Mismatches: 186, Indels: 74
0.82 0.13 0.05
Matches are distributed among these distances:
209 7 0.01
211 1 0.00
212 340 0.28
213 357 0.30
214 98 0.08
215 89 0.07
216 102 0.08
217 154 0.13
218 62 0.05
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (214 bp):
TTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAA
CTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACG
ATCCATTCCTTCGAGCAAT
Found at i:20272816 original size:569 final size:566
Alignment explanation
Indices: 20271707--20272846 Score: 1439
Period size: 569 Copynumber: 2.0 Consensus size: 566
20271697 CAATTTTATG
* * *
20271707 AACATTCTTTCTCGAGAAATAGCAGCATTTGGTCTAAATAGTTTATCATTTTCGAAACTAGTTTT
1 AACATTCATTCTCGAGAAATAGCAGCATTTAGTCTAAATAGTTTATCATTTTCGAAACAAGTTTT
** ** * * * *
20271772 CGTCTTTGAATCAAAAATTTATTTATGTGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCTGA
66 CGTCTTTGAAAAAAAAACATATTTACGTGAGAATTGTTTCACTTGGTCCTTGGACCAACTTCTAA
* * * **
20271837 ACTTTTCAAACAAGTTTTGGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATT
131 ACTATTCAAAC-A-TTTTGATTCTTTTATAACTTCGGTTCCCTACAAAATTCAAGACGATACATT
** * * * **
20271902 CCTTCGAGCAACTTCCTAAAAATTTTATGCTAAGGAAATCGTATAATTTTTCTAAATTGTTTTTC
194 CCTTCGAGCAACTTCCTAAAAATTCCATGCTAAGGAAATCGCATAATTTGTCTAAATAGTTTGCC
* * * * * *
20271967 ATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGATATTTGTTTCACTTGGT
259 ATTATGGAAACAACTTTTGGTCATTCAATCAAAAACTTATTTACGTGAGAATTGTTTCACTTGGT
* * * *
20272032 TCTTGGAAGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACAG
324 TCTTGGAAGAACTTCCAAACTTGTAAAACTTTTACGAGTTCTATTATAACTTCGGATCCTTACAG
* * *
20272097 TAATCAAGACTATACATTCCTTCGAGCAACTTTCTAAACATTGTACGATAGAAAAATCGCATCAT
389 TAATCAAGACGATACATTCCTTCGAGCAACTTTATAAACATTATACGATAGAAAAATCGCATCAT
* * * *
20272162 ATTTCTAAATTGTTTGTCATTTTGTAAACATGTTTTGGTCTTTAAATGAAAAACTTATTTACGTG
454 ATTTCTAAATTGTTTATCATTTTATAAACAAGTTTTGGTCCTTAAATGAAAAACTTATTTACGTG
20272227 AAAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCA
519 AAAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCA
* * * *
20272275 AACATTCCATTCTCGGGAAATCA-CATCATTTAGTCTAAATAGTTTTTTATTTT-GTAAACAAGT
1 AACATT-CATTCTCGAGAAAT-AGCAGCATTTAGTCTAAATAGTTTATCATTTTCG-AAACAAGT
* *
20272338 TTTGGTCTTT-AAAAAGAAAACATATTTACGTGAGAATTGTTTCTCTTGG-CCGTTGGACCAACT
63 TTTCGTCTTTGAAAAA-AAAACATATTTACGTGAGAATTGTTTCACTTGGTCC-TTGGACCAACT
*
20272401 TCTAAACTATTCAAAC-TTTTACGAATTCTTTTATAACTT-TGTTCCCTACAAAATTCAAGACGA
126 TCTAAACTATTCAAACATTTT--G-ATTCTTTTATAACTTCGGTTCCCTACAAAATTCAAGACGA
* ** * * ** *
20272464 TCCATTCCTTCGAGCAA-TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
188 TACATTCCTTCGAGCAACTTCCT-AAAAATTCCATGCTAAGGAAATCGCATAATTT-GTCTAAAT
* * *
20272528 AGTTTGCCATTATGTAAACAACTTTTGGTCATTCAATTAAATACTTATTTACGTGAGAATTGTTT
251 AGTTTGCCATTATGGAAACAACTTTTGGTCATTCAATCAAAAACTTATTTACGTGAGAATTGTTT
* * *
20272593 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTAAAACTTTTACGAGTTCTATTATAACTTCGGAT
316 CACTTGGTTCTTGGAAGAACTTCCAAACTTGTAAAACTTTTACGAGTTCTATTATAACTTCGGAT
* * * * * **
20272658 CCTTACAGTATTCAAGACGATACATTCCTTCGAGCAACTTTATAAATATTATATGCTCGGGAAAT
381 CCTTACAGTAATCAAGACGATACATTCCTTCGAGCAACTTTATAAACATTATACGATAGAAAAAT
* * * * *
20272723 TGCTTCATTTTTCTAAATTGTTTATCATTTTATAAACAAGTTTTGGTCCTTAAATTAAATACTTA
446 CGCATCATATTTCTAAATTGTTTATCATTTTATAAACAAGTTTTGGTCCTTAAATGAAAAACTTA
* * *
20272788 TTTACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTTTCA
511 TTTACGTGAAAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCA
20272844 AAC
1 AAC
20272847 TTTTACGAGT
Statistics
Matches: 486, Mismatches: 76, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
566 4 0.01
567 3 0.01
568 72 0.15
569 406 0.84
570 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (566 bp):
AACATTCATTCTCGAGAAATAGCAGCATTTAGTCTAAATAGTTTATCATTTTCGAAACAAGTTTT
CGTCTTTGAAAAAAAAACATATTTACGTGAGAATTGTTTCACTTGGTCCTTGGACCAACTTCTAA
ACTATTCAAACATTTTGATTCTTTTATAACTTCGGTTCCCTACAAAATTCAAGACGATACATTCC
TTCGAGCAACTTCCTAAAAATTCCATGCTAAGGAAATCGCATAATTTGTCTAAATAGTTTGCCAT
TATGGAAACAACTTTTGGTCATTCAATCAAAAACTTATTTACGTGAGAATTGTTTCACTTGGTTC
TTGGAAGAACTTCCAAACTTGTAAAACTTTTACGAGTTCTATTATAACTTCGGATCCTTACAGTA
ATCAAGACGATACATTCCTTCGAGCAACTTTATAAACATTATACGATAGAAAAATCGCATCATAT
TTCTAAATTGTTTATCATTTTATAAACAAGTTTTGGTCCTTAAATGAAAAACTTATTTACGTGAA
AATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCA
Found at i:20274433 original size:569 final size:565
Alignment explanation
Indices: 20273347--20274485 Score: 1505
Period size: 569 Copynumber: 2.0 Consensus size: 565
20273337 CAATTTTCTG
* * *
20273347 AACATTCTTTCTCGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTAAAAACACGTTTT
1 AACATTCATTCTCGGGAAATAGCAGCATTTAGTCTAAATAGTTTGTCATTTTAAAAACAAGTTTT
** ** * * * *
20273412 GGTCTTTTAATCAAAAACTTATTTATGTGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCTGA
66 GGTCTTTTAAAAAAAAACACATTTACGTGAGAATTGTTTCACTTGGCTCTTGGACCAACTTCTAA
* * * ** *
20273477 ACTTTTCAAAAAAGTTTTGGCTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATT
131 ACTATTC--AAAACTTTTGACTCTTTTATAACTTCGGTTCCTTACAAAATTCAAGACGATACACT
** * * **
20273542 CCTTCGAGCAACTTCCAAAAAATTTGATGCTAGGGAAATCGTATAATTTTCTAAATTGTTTTTCA
194 CCTTCGAGCAACTTCCAAAAAATTCCATGCTAGGGAAATCGCATAATTTTCTAAATAGTTTGCCA
* * * * * *
20273607 TTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGATATTTGTTTCACTTGGTT
259 TTATGGAAACAACTTTTGGTCATTCAATCAAAAACTTATTTACGTGAGAATTGTTTCACTTGGTT
*
20273672 CTTGGAAGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACAGT
324 CTTGGAAGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGT
* *
20273737 AATCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATTGTACGATAGAAAAATCGCATCATA
389 AATCAAGACGATACATTCCTTCGAGCAACTTTATAAACATTATACGATAGAAAAATCGCATCATA
* * * * *
20273802 TTTCTAAATTGTTTGTCATTTTGTAAACATGTTTTGGTCTTTAAATTAAAAACTTTTTTACGTGA
454 TTTCTAAATTGTTCGTCATTTTATAAACAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGA
20273867 AAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCA
519 AAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCA
* * * **
20273914 AACATTCCATTCTCGGGAAATCA-CATCATTTAGTCTAAATAGTTTTTTATTTTGTAAACAAGTT
1 AACATT-CATTCTCGGGAAAT-AGCAGCATTTAGTCTAAATAGTTTGTCATTTTAAAAACAAGTT
* *
20273978 TTGGTC-TTTAAAAAGAAAACACATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACCAACTTC
64 TTGGTCTTTTAAAAA-AAAACACATTTACGTGAGAATTGTTTCACTTGGCTCTTGGACCAACTTC
* * *
20274042 TAAACTATTC-AAACTTTTACGAATTCTTTTATAACTT-TGTTCCTTACAAAATTCAAGACGATC
128 TAAACTATTCAAAACTTTT--G-ACTCTTTTATAACTTCGGTTCCTTACAAAATTCAAGACGATA
* * * * *
20274105 CACTCCTTCGAGCAATTTTCC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
190 CACTCCTTCGAGCAA-CTTCCAAAAAATTCCATGCTAGGGAAATCGCATAATTT--TCTAAATAG
* * ** *
20274169 TTTGCCATTATGTAAACAACTTTTGGTCATTCAATTAAATGCTTATTTACGTGAGAATTGTTTCT
252 TTTGCCATTATGGAAACAACTTTTGGTCATTCAATCAAAAACTTATTTACGTGAGAATTGTTTCA
* *
20274234 CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
317 CTTGGTTCTTGGAAGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * ** *
20274299 TTACAGTATTCAAGACGATACATTCCTTCGAGCAACTTTATAAATATTATATGCTTGGGAAATTG
382 TTACAGTAATCAAGACGATACATTCCTTCGAGCAACTTTATAAACATTATACGATAGAAAAATCG
*
20274364 CATCATTTTTCTAAATTGTTCGTCATTTTATAAACAAGTTTTGGTCCTTAAATTAAAAACTTATT
447 CATCATATTTCTAAATTGTTCGTCATTTTATAAACAAGTTTTGGTCCTTAAATTAAAAACTTATT
* * *
20274429 TACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTTTCA
512 TACGTGAAAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCA
20274483 AAC
1 AAC
20274486 TTTTACGAGT
Statistics
Matches: 492, Mismatches: 71, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
565 7 0.01
567 74 0.15
568 120 0.24
569 291 0.59
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (565 bp):
AACATTCATTCTCGGGAAATAGCAGCATTTAGTCTAAATAGTTTGTCATTTTAAAAACAAGTTTT
GGTCTTTTAAAAAAAAACACATTTACGTGAGAATTGTTTCACTTGGCTCTTGGACCAACTTCTAA
ACTATTCAAAACTTTTGACTCTTTTATAACTTCGGTTCCTTACAAAATTCAAGACGATACACTCC
TTCGAGCAACTTCCAAAAAATTCCATGCTAGGGAAATCGCATAATTTTCTAAATAGTTTGCCATT
ATGGAAACAACTTTTGGTCATTCAATCAAAAACTTATTTACGTGAGAATTGTTTCACTTGGTTCT
TGGAAGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTAA
TCAAGACGATACATTCCTTCGAGCAACTTTATAAACATTATACGATAGAAAAATCGCATCATATT
TCTAAATTGTTCGTCATTTTATAAACAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAAA
ATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCA
Found at i:20274511 original size:217 final size:214
Alignment explanation
Indices: 20273914--20275189 Score: 1440
Period size: 216 Copynumber: 5.9 Consensus size: 214
20273904 AAACTTTTCA
* * * * *
20273914 AACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTTATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
** ** * * * *
20273979 TGGTCTTT-AAAAAGAAAACACATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGACCAACTTCT
66 TGGTCTTTGAATTA-AAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCC
* * *
20274043 AAACTAT-TCAAACTTTTACGAATTCTTTTATAACTT-TGTTCCTTACAA-AATTCAAGACGATC
130 AAACT-TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACGATC
* *
20274105 CACTCCTTCGAGCAATTTTCCG
193 CATTCCTTCGAGCAATTTTCTG
* * *
20274127 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGCCATTATGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * ** *
20274192 TGGTCATTCAATTAAATGCTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCA
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCA
* *
20274257 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACAT
131 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* * *
20274322 TCCTTCGAGCAACTTTATA
196 TCCTTCGAGCAATTTTCTG
* ** * * * * * *
20274341 AATATTATATGCTTGGGAAATTGCATCATTT-TTCTAAATTGTTCGTCATTTTATAAACAAGTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * *
20274405 TGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGATGAACT
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG--T-T-TCTCTTGGTTCTTGGACGAACT
* ***
20274470 TCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGG-TAAATAAAGTATTCAAGACGAT
127 TCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
**
20274534 CCATTCCTTCGAGCAATTTTCCA
192 CCATTCCTTCGAGCAATTTTCTG
* * *
20274557 AAGATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * **
20274622 TGGTCTTTGAATTATATATTTATTTTCGTGAGAATTGTTTCTCTTTTGGTTCTTGGATTAACTTC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAACTTC
** * * * * * ** *
20274687 TGAACTTGTCAAACTTTTACAAGTTCTTTTATAATTTCAGTTCCATAAAGAATTCAAGATAATCA
129 CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
20274752 ATTCCTTCGAGCAATTTT-TCG
194 ATTCCTTCGAGCAATTTTCT-G
* * *
20274773 AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AATGTA
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTT
* * * *
20274837 TTGTTGTTTGAATTAAAAACTTATGTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTT
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTT
* * * * *
20274902 TCGAACTAGTCACAA-TTTTATGAGTTCTTTCATAACTTCGGTTCC-TAAATGTATTCAAGACGA
128 CCAAACTTGTCA-AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA-GTATTCAAGACGA
* *
20274965 TCCATTTCTTTCAAGCAATTTTCTG
191 TCCA-TTCCTTCGAGCAATTTTCTG
* * ** ** * *
20274990 AACATTCTATTCTCGAAAAATAACAGCATTTGGT-TGAAATAGTTTGTCATTTTGCAAACAAGTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTT
* *
20275054 TTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGAAGAACTTCC
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCC
* * * ** *
20275119 GAACTTGCCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTATTGTATTCAAGATGATCCA
130 AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
20275184 TTCCTT
195 TTCCTT
20275190 TAAGCAGTTT
Statistics
Matches: 899, Mismatches: 140, Indels: 47
0.83 0.13 0.04
Matches are distributed among these distances:
212 1 0.00
213 202 0.22
214 74 0.08
215 135 0.15
216 255 0.28
217 225 0.25
218 7 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (214 bp):
AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCA
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCGAGCAATTTTCTG
Found at i:20275648 original size:213 final size:213
Alignment explanation
Indices: 20275203--20276277 Score: 1266
Period size: 213 Copynumber: 5.0 Consensus size: 213
20275193 GCAGTTTTTG
* *
20275203 ATAAGTTTTTAATTTAAAGTCCAAAACTTGTTTACAAAATGACAAACAATTTAGA-AAAATGATG
1 ATAAG-TTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATG
* * * * * * * * *
20275267 CGATTTTTCTATCGTAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATTGCCTTGAATACTGTAA
65 CGATTTCTCGAGCATAGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAA
* * * *
20275332 GGAACCGAAGCTATAAAAGAA--CGTAAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAG
130 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAG
20275395 AGAAACAATTCTCACGTAA
195 AGAAACAATTCTCACGTAA
* * * * *
20275414 ATAAGCATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACCAACTATTTAGACCAAATGATG
1 ATAAG-TTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATG
* * * * * *
20275479 CGATTACCCGAGCATAGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTCAATTCTCTAA
65 CGATTTCTCGAGCATAGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAA
* *
20275544 GGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAACAGCCAAG
130 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAG
*
20275608 AGAAACAATTCTCACGTAG
195 AGAAACAATTCTCACGTAA
** * * * *
20275627 ATAAGTTTTCGTTTTAAAGACCAAAACTTATTTACCAAATGAAAAACTATTTAGACTAAATGATG
1 ATAAGTTTT-AATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATG
* * * * ** *
20275692 CGATTTCCCGAGAATGGAATGTTCA-AAAATTACTTAAAGGAATGGATCATCTTGAATACT-TCA
65 CGATTTCTCGAGCATAGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGT-A
* * * * *
20275755 AGGAACCGAAGTTATAAAAGAAGTTGTAAAAGTATGAAAAGTTTGGAAGTTCGTCCAAGAACGAA
129 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAAC-CA
* *
20275820 GAGAGAGAACTATTTTCACGTAA
193 -AGAGA-AACAATTCTCACGTAA
*
20275843 ATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGA-AAAATGATG
1 ATAAG-TTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATG
* * * * * * * * *
20275907 CCATTTTTCTATCGTAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCATCTTGAATACTGTAA
65 CGATTTCTCGAGCATAGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAA
** * * *
20275972 GGAACCGAAACTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAGTTCGTTCAAGAACCAAG
130 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAG
20276037 AGAAACAATTCTCACGTAA
195 AGAAACAATTCTCACGTAA
* * * * * * *
20276056 ATAAGCATTTAATTGAAAGACCAATAGTTGTTTACAAAATGATAAACTATTTAGACCAAATTATG
1 ATAAG-TTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATG
* * *
20276121 CGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGCAGGAATGGATCGTTTTGAATACTGTAA
65 CGATTTCTCGAGCATAGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAA
* * * ** * *
20276186 GGAACC-AAGTTACATAAGAACTCGTAAAAGTTTGAACAGTTTAGAAGTTCGTCCAACAGCCAAG
130 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAG
* *
20276250 AGAAACAATTCCCGCGTAA
195 AGAAACAATTCTCACGTAA
20276269 ATAAGTTTT
1 ATAAGTTTT
20276278 CGTTGTAAAC
Statistics
Matches: 725, Mismatches: 126, Indels: 25
0.83 0.14 0.03
Matches are distributed among these distances:
211 62 0.09
212 107 0.15
213 306 0.42
214 72 0.10
215 30 0.04
216 143 0.20
217 5 0.01
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (213 bp):
ATAAGTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGC
GATTTCTCGAGCATAGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTGTAAG
GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGA
GAAACAATTCTCACGTAA
Found at i:20276002 original size:429 final size:426
Alignment explanation
Indices: 20275210--20276273 Score: 1206
Period size: 429 Copynumber: 2.5 Consensus size: 426
20275200 TTGATAAGTT
* * * * * * *
20275210 TTTAATTTAAAGTCCAAAACTTGTTTACAAAATGACAAACAATTTAGA-AAAATGATGCGATTTT
1 TTTAATTGAAAGACCAAAACTTATTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTC
* * *** * * * * * * ***
20275274 TCTATCGTAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATTGCCTTGAATACTGTAAGGAACCG
66 CCGAGAATGGAATGTTCAGAAAATTACTCAAAGGAATGGATCATCTTGAATACTGTAAGGAACCG
* * * * * *
20275339 AAGCTATAAAAGAA-CGTAAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAAACAA
131 AAGTTATAAAAGAATCGTAAAAGTTTGAAAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAAACAA
* * *
20275403 TTCTCACGTAAATAAGCATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACCAACTATTTAG
196 TTCTCACGTAAATAAGCATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAG
* * *
20275468 ACCAAATGATGCGATTACCCGAGCATAGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTT
261 ACAAAATGATGCCATTACCCGAGCATAGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTT
* **
20275533 CAATTCTCTAAGGAACCAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCC
326 CAATACTCTAAGGAACCAAACTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCC
* * *
20275598 AACAGCCAAGAGAAACAATTCTCACGTAGATAAG-T
391 AACAACCAAGAGAAACAATTCTCACGTAAATAAGCA
** * * *
20275633 TTTCGTTTTAAAGACCAAAACTTATTTACCAAATGAAAAACTATTTAGACTAAATGATGCGATTT
1 TTT-AATTGAAAGACCAAAACTTATTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTT
*
20275698 CCCGAGAATGGAATGTTCA-AAAATTACTTAAAGGAATGGATCATCTTGAATACT-TCAAGGAAC
65 CCCGAGAATGGAATGTTCAGAAAATTACTCAAAGGAATGGATCATCTTGAATACTGT-AAGGAAC
* *
20275761 CGAAGTTATAAAAGAAGTTGTAAAAGTATGAAAAGTTTGGAAGTTCGTCCAAGAACGAAGAGAGA
129 CGAAGTTATAAAAGAA-TCGTAAAAGTTTGAAAAGTTTGGAAGTTCGTCCAAGAAC-AA-AGAGA
* * ** *
20275826 GAACTATTTTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACA
191 -AACAATTCTCACGTAAATAAGCATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACA
*** * * * * * * *
20275891 ATTTAGA-AAAATGATGCCATTTTTCTATCGTAGAATGTTTAGAAAGTTGCTCGAAGGAATGTAT
255 ATTTAGACAAAATGATGCCATTACCCGAGCATAGAATGTTCAAAAAATTGCTCGAAGGAATGGAT
* * * *
20275955 CATCTTGAATACTGTAAGGAACCGAAACTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAG
320 CATCTTCAATACTCTAAGGAACC-AAACTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGGAAG
* *
20276020 TTCGTTCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGCA
384 TTCGTCCAACAACCAAGAGAAACAATTCTCACGTAAATAAGCA
* * * * *
20276063 TTTAATTGAAAGACCAATAGTTGTTTACAAAATGATAAACTATTTAGACCAAATTATGCGATTTC
1 TTTAATTGAAAGACCAAAACTTATTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTC
* * * ** * *
20276128 TCGAGCATGGAATGTTCAGAAAATTGCTCGCAGGAATGGATCGTTTTGAATACTGTAAGGAACC-
66 CCGAGAATGGAATGTTCAGAAAATTACTCAAAGGAATGGATCATCTTGAATACTGTAAGGAACCG
* * * * * * *
20276192 AAGTTACATAAGAACTCGTAAAAGTTTGAACAGTTTAGAAGTTCGTCCAACAGCCAAGAGAAACA
131 AAGTTATAAAAGAA-TCGTAAAAGTTTGAAAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAAACA
* *
20276257 ATTCCCGCGTAAATAAG
195 ATTCTCACGTAAATAAG
20276274 TTTTCGTTGT
Statistics
Matches: 532, Mismatches: 97, Indels: 21
0.82 0.15 0.03
Matches are distributed among these distances:
423 4 0.01
424 87 0.16
425 25 0.05
426 49 0.09
427 6 0.01
428 70 0.13
429 250 0.47
430 40 0.08
431 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (426 bp):
TTTAATTGAAAGACCAAAACTTATTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTC
CCGAGAATGGAATGTTCAGAAAATTACTCAAAGGAATGGATCATCTTGAATACTGTAAGGAACCG
AAGTTATAAAAGAATCGTAAAAGTTTGAAAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAAACAA
TTCTCACGTAAATAAGCATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAG
ACAAAATGATGCCATTACCCGAGCATAGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTT
CAATACTCTAAGGAACCAAACTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCC
AACAACCAAGAGAAACAATTCTCACGTAAATAAGCA
Found at i:20277073 original size:139 final size:139
Alignment explanation
Indices: 20276849--20277103 Score: 393
Period size: 139 Copynumber: 1.8 Consensus size: 139
20276839 AAAATAGCAG
* * * *
20276849 CATTTGGTCAAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTGTTTGAATCAAAAACTTATTTA
1 CATTTAGTCAAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTTA
*
20276914 CGTGAGAATTGTTTCACTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACATTCCATTCTCGGG
66 CGTGAGAATTGTTTCACTTGGCTCTTGGACGAACTTCCAAACTTTTCAAACATTCCATTCTCGGG
20276979 AAATCACAT
131 AAATCACAT
* * * *
20276988 CATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACGAAAACTTATTTA
1 CATTTAGTCAAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTTA
* * * *
20277053 CGTGAGAATTGTTTCTCTTGGCTGTTGGATGAACTTCCGAACTTTTCAAAC
66 CGTGAGAATTGTTTCACTTGGCTCTTGGACGAACTTCCAAACTTTTCAAAC
20277104 TTTTACAGCT
Statistics
Matches: 103, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
139 103 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (139 bp):
CATTTAGTCAAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTTA
CGTGAGAATTGTTTCACTTGGCTCTTGGACGAACTTCCAAACTTTTCAAACATTCCATTCTCGGG
AAATCACAT
Found at i:20277311 original size:352 final size:355
Alignment explanation
Indices: 20276625--20277316 Score: 912
Period size: 352 Copynumber: 2.0 Consensus size: 355
20276615 ATGGTCGACT
* * * * * * *
20276625 AATCGCATCATTTGGTCAGAATAGTTTGTCTTTTTGTAAAAAGTTTTTGTTTTTTGAAATAAAAA
1 AATCACATCATTTAGTCAGAATAGTTTGTCATTTTGTAAAAAGTTTTTGGTCTTTAAAACAAAAA
* *
20276690 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTCAAACTTTT
66 CTTATTTACATGAGAATTGTTTCTCTCTTGGCTCTTGGATGAACTTCCGAACTAGTCAAACTTTT
* *
20276755 ATGAGTTCTTTCAAAACTTCGTTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT
131 ATCAGTTCTTTCAAAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT
* * *
20276820 CTGAACATTATATTATCGAAAAATAGCAGCATTTGGTCAAAATAGTTTGTCATTTTGGAAACAAG
196 CTGAACATTACATTATCGAAAAATAGCAGCATTTAGTCAAAATAGTTTGTCATTTTGGAAACAAA
* * * * * *
20276885 TTTTGGTGTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCACTTGGTTCTTGGACGAACTT
261 TTTTGGTCTTTAAAACAAAAACTTATTTACATGAGAATTGTCTCACTTGGCTCTTGGACGAACTT
20276950 CCAAACTTTTCAAACATTCCATTCTCGGGA
326 CCAAACTTTTCAAACATTCCATTCTCGGGA
* *
20276980 AATCACATCATTTAGTCTA-AATAGTTTTTCATTTTGTAAACAAG-TTTTGGTCTTTAAAACGAA
1 AATCACATCATTTAGTC-AGAATAGTTTGTCATTTTGTAAA-AAGTTTTTGGTCTTTAAAACAAA
* * **
20277043 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGCTGTTGGATGAACTTCCGAACTTTTCAAACTT
64 AACTTATTTACATGAGAATTGTTTCTCTCTTGGCTCTTGGATGAACTTCCGAACTAGTCAAACTT
* * * * *
20277106 TTA-CAGCTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCTATTCCTTTAAGCAAT
129 TTATCAG-TTCTTTCAAAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAAT
* * * * * * * *
20277170 TTT-TGAACATTCCATTCTC-AGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAA
193 TTTCTGAACATTACATTATCGA-AAAATAGCAGCATTTAGTCAAAATAGTTTGTCATTTTGGAAA
* * *
20277233 CAAATTTTGGTCTTTAAAACGAAAACTTATTTACATGAGAATTGTCTCTCTTGGCTGTTGGACGA
257 CAAATTTTGGTCTTTAAAACAAAAACTTATTTACATGAGAATTGTCTCACTTGGCTCTTGGACGA
*
20277298 ACTTCCCAACTTTTCAAAC
322 ACTTCCAAACTTTTCAAAC
20277317 TTTTACAAGT
Statistics
Matches: 290, Mismatches: 43, Indels: 11
0.84 0.12 0.03
Matches are distributed among these distances:
351 1 0.00
352 123 0.42
353 92 0.32
354 2 0.01
355 68 0.23
356 4 0.01
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (355 bp):
AATCACATCATTTAGTCAGAATAGTTTGTCATTTTGTAAAAAGTTTTTGGTCTTTAAAACAAAAA
CTTATTTACATGAGAATTGTTTCTCTCTTGGCTCTTGGATGAACTTCCGAACTAGTCAAACTTTT
ATCAGTTCTTTCAAAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT
CTGAACATTACATTATCGAAAAATAGCAGCATTTAGTCAAAATAGTTTGTCATTTTGGAAACAAA
TTTTGGTCTTTAAAACAAAAACTTATTTACATGAGAATTGTCTCACTTGGCTCTTGGACGAACTT
CCAAACTTTTCAAACATTCCATTCTCGGGA
Found at i:20277634 original size:216 final size:216
Alignment explanation
Indices: 20276956--20277717 Score: 930
Period size: 213 Copynumber: 3.6 Consensus size: 216
20276946 ACTTCCAAAC
* * *
20276956 TTTTCAAACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAAAC
1 TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAC
* *
20277021 AAGTTTTGGTCTTTAAAACGAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGCTGTTGGATG
66 AAGTTTTGGTCTTTAAAACGAAAACTTATTTACATGAGAATTGTTTCTCTTTTGGCTGTTGGACG
*
20277084 AACTTCCGAACTTTTCAAACTTTTAC-AGCTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
131 AACTTCCGAACTTTTCAAACTTTTACAAG-TTCTTTTATAACTTCGGTTCCATAAAGTATTCAAG
* * **
20277148 ATGATCTATTCCTTTAAGCAAT
195 ACGATCCATTCCTTCGAGCAAT
* * * *
20277170 TTTT-GAACATTCCATTCTCAGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAAC
1 TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAC
* *
20277234 AAATTTTGGTCTTTAAAACGAAAACTTATTTACATGAGAATTG--TCTCTCTTGGCTGTTGGACG
66 AAGTTTTGGTCTTTAAAACGAAAACTTATTTACATGAGAATTGTTTCTCTTTTGGCTGTTGGACG
* * * * *
20277297 AACTTCCCAACTTTTCAAACTTTTACAAGTTTTTTTATAACTT-GGTTCCATATAGTTTTCAAAA
131 AACTTCCGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCATAAAGTATTCAAGA
*
20277361 CAATCCATTCCTTCGAGCAAT
196 CGATCCATTCCTTCGAGCAAT
* * *** * *
20277382 TTTTCTAACATTCCATGCTCGAGAAATTGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAG
1 TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * ** * * * * *
20277447 AACTTTTTGTCCTT-GAATTAAATACTTATTTACGTGGGAATTGTTTCTCTTTTGGTTCTGGGAC
66 AAGTTTTGGTCTTTAAAACGAAA-ACTTATTTACATGAGAATTGTTTCTCTTTTGGCTGTTGGAC
* * * *
20277511 CAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAG
130 GAACTTCCGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCATAAAGTATTCAAG
*
20277576 ACGATCCATTCATTCGAGCAAT
195 ACGATCCATTCCTTCGAGCAAT
* * *
20277598 TTTTCGAACATTCCATGCTTGGGAAATCACATCATTTGGTCTAACTAGTTTGTCATTTTGTAAA-
1 TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAC
* * * *** *
20277662 AAGGTTTTGTTTTTTGAATTAAAAACTTATTTAAATGAGAATTGTTTCTCTCTTTG
66 AA-GTTTTGGTCTTTAAAACGAAAACTTATTTACATGAGAATTGTTTCTCT-TTTG
20277718 ATACGAGTTA
Statistics
Matches: 470, Mismatches: 67, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
211 4 0.01
212 42 0.09
213 229 0.49
214 6 0.01
215 56 0.12
216 124 0.26
217 9 0.02
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.41
Consensus pattern (216 bp):
TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGTCTTTAAAACGAAAACTTATTTACATGAGAATTGTTTCTCTTTTGGCTGTTGGACG
AACTTCCGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCATAAAGTATTCAAGA
CGATCCATTCCTTCGAGCAAT
Found at i:20279645 original size:195 final size:196
Alignment explanation
Indices: 20279311--20280550 Score: 557
Period size: 216 Copynumber: 6.0 Consensus size: 196
20279301 TTCATTAATG
* *
20279311 TATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCTATTCTCGGGAAATAGCAGCAT
1 TATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATTCTATTATCGGGAAATAGCAGCAT
* * * * * *
20279376 TTGGTGTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTCTTTGAATCAAAAAGTTATTTACGT
66 TTAGTCTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTCTTTAAAACAAAAACTTATTTACAT
* * *
20279441 GACAATTGTTTCTCTTAGTTCTTGGACAAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTA
131 GACAATTGTTTCTCTTAGCTATTGGACAAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTA
20279506 T
196 T
* * * * *
20279507 TATTCAAGACGATCCATTCCTTTGACCAATTTTC-GAACATTCCT-TTATCTGGAAATTGTATCA
1 TATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATT-CTATTATCGGGAAATAGCAGCA
* * * **
20279570 TTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAGGAAAACTTATTTACA
65 TTTAGTCTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTCTTTAAAACAAAAACTTATTTACA
* * * *
20279635 TGAGAATTGTTTCTCTTGGCTATTGGACAAACTTCCGAATTTTTCAAACTTTTACAAGTTCTTTT
130 TGACAATTGTTTCTCTTAGCTATTGGACAAACTTCCGAACTTGTCAAACTTTTACAAGTTC-TTT
20279700 ATAACTTGGTTCCTT
194 -T-A----------T
* * ** * * *
20279715 ACAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCCT-AACATT-TCATGCTTGAGAAATCG
1 ----TATTCAAGACGATCCATTCCTTCGACCAATTTT-CTGAACATTCT-ATTATCGGGAAATAG
** * * * * * ** * ** *
20279778 CATTATTTGGTCTAAATAGTTTGTCATTTTGTAAAGAACTTCTGGTCCCTCAATTAAATACTTAT
60 CAGCATTTAGTCTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTCTTTAAAACAAAAACTTAT
** * * * * * * * ** *
20279843 TTATGTGAGAATTGTTTCGCTTTGCTGTTGGACGAACTTCCAAACTTTTTCGAGTTCTTTTATAA
125 TTACATGACAATTGTTTCTCTTAGCTATTGGACAAACTTCCGAAC-TTGTC-A-AACTTTTACAA
* * *
20279908 CTTGGATCCTTATAG
187 ----G-TTCTTTTAT
* * * * * * * ** * *
20279923 CATTCAAGATGATCCATTCCATCAAGCAATTTT-TCAAACATTCCATGCTCGGGAAATCGCATCA
1 TATTCAAGACGATCCATTCCTTCGACCAATTTTCT-GAACATTCTATTATCGGGAAATAGCAGCA
* * ** * * * * ** * *
20279987 TTTGGTCTATATAGTTTGTCATTTTATAAACAACTTTTTGTCTTTGAATTAAATACTTATTTACG
65 TTTAGTCTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTCTTTAAAACAAAAACTTATTTACA
* * * * * * * *
20280052 TGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTCCCAAACTTGTCAAACTTTAACGAGTTCTA
130 TGACAATTGTTTCTC-TTAGC-TATTGGACAAACTTCCGAACTTGTCAAACTTTTACAAGTTCT-
20280117 TTATAATT
192 TT-T-A-T
* * * * * ***
20280125 TCAGTTCCATAAAGTAGTCAAGATGATACATTCCTTCGAGCAATTTGCCGAACATTCCAAGCTCG
1 T-A-TT-C---AAG-A--C-----GATCCATTCCTTCGACCAATTTTCTGAACATTCTATTATCG
* * * * * * * * * **
20280190 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTATAAAGGTTTTGTTGTTTGAATTAA
52 GGAAATAGCAGCATTTAGTCTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTCTTTAAAACAA
* * * * * * * *
20280255 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACTTTCGAACTAGTCAAACT
117 AAACTTATTTACATGACAATTG-TT-TCTCTTAGCTATTGGACAAACTTCCGAACTTGTCAAACT
*
20280320 TTTACGAGTTCTTTCATAACTTCGGTTCCGT
180 TTTACAAGTTCTTT--T-A-----------T
* * * ** * *
20280351 AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCTATTCTCTAGAATTACCA
1 ----TATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATTCTATTATCGGGAAATAGCA
* * * *
20280416 GCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTT
62 GCATTTAGTCTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTCTTTAAAACAAAAACTTATTT
* * * * ** * **
20280481 ACGTGAGAATTGTTTCTCTTCA-TTCTTGGATGAACTTTCGAACTTGTCAAACTTTTATGAGTTC
127 ACATGACAATTGTTTCTCTT-AGCTATTGGACAAACTTCCGAACTTGTCAAACTTTTACAAGTTC
20280545 TTTTAT
191 TTTTAT
20280551 AACATCGGTT
Statistics
Matches: 824, Mismatches: 148, Indels: 140
0.74 0.13 0.13
Matches are distributed among these distances:
195 129 0.16
196 37 0.04
197 1 0.00
198 4 0.00
199 2 0.00
200 2 0.00
201 1 0.00
202 1 0.00
203 7 0.01
204 123 0.15
205 10 0.01
206 17 0.02
208 4 0.00
209 1 0.00
211 2 0.00
212 31 0.04
213 103 0.12
214 52 0.06
215 5 0.01
216 265 0.32
217 5 0.01
218 5 0.01
219 1 0.00
220 3 0.00
221 3 0.00
223 1 0.00
224 3 0.00
226 1 0.00
227 1 0.00
228 2 0.00
229 1 0.00
230 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (196 bp):
TATTCAAGACGATCCATTCCTTCGACCAATTTTCTGAACATTCTATTATCGGGAAATAGCAGCAT
TTAGTCTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTCTTTAAAACAAAAACTTATTTACAT
GACAATTGTTTCTCTTAGCTATTGGACAAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTA
T
Found at i:20280318 original size:216 final size:216
Alignment explanation
Indices: 20279507--20281649 Score: 2224
Period size: 216 Copynumber: 10.0 Consensus size: 216
20279497 GTTCTTTTAT
** * * ** * * *
20279507 TATTCAAGACGATCCATTCCTTTGACCAA-TTTTCGAACATTCCTTTATCTGGAAATTGTATCAT
1 TATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
* * * *** *
20279571 TTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAGGAAAACTTATTTACAT
66 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * * *
20279636 GAGAATTG-TT-TCTCTTGGCTATTGGACAAACTTCCGAATTTTTCAAACTTTTACAAGTTCTTT
131 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
*
20279699 TATAACTT-GGTTCCTTACAG
196 TATAACTTCGGTTCCTTAAAG
* * * * * * * *
20279719 TATTCAAGACAATCCATTCCTTCGAGCAATTTTCCTAACATTTCATGCTTGAGAAATCGCATTAT
1 TATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
* * * ** * * *
20279784 TTGGTCTAAATAGTTTGTCATTTTGTAAAGAACTTCTGGTCCCTCAATTAAATACTTATTTATGT
66 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * *
20279849 GAGAATTGTTTCGCT-TT-GCTGTTGGACGAACTT-----C----CAAACTTTTTCGAGTTCTTT
131 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
* *
20279903 TATAACTT-GGATCCTTATAG
196 TATAACTTCGGTTCCTTAAAG
* * * *
20279923 CATTCAAGATGATCCATTCCATCAAGCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATCAT
1 TATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
* * * * *
20279988 TTGGTCTATATAGTTTGTCATTTTATAAACAACTTTTTGTCTTTGAATTAAATACTTATTTACGT
66 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * * * * *
20280053 GAGAATTATTTCTCTTTTGCTTCTTGGACAAACTCCCAAACTTGTCAAACTTTAACGAGTTCTAT
131 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
* * *
20280118 TATAATTTCAGTTCCATAAAG
196 TATAACTTCGGTTCCTTAAAG
* * * * ** *
20280139 TAGTCAAGATGATACATTCCTTCGAGCAATTTGCCGAACATTCCAAGCTCGGGAAATCGCATCAT
1 TATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
* * *
20280204 TTGGTCTAAATAGTTTGTCATTTTGTATAA-AGGTTTTGTTGTTTGAATTAAAAACTTATTTACG
66 TTGGTCTAAATAGTTTGTCATTTTGTA-AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
** * *
20280268 TGAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACTTTCGAACTAGTCAAACTTTTACGAGTTCTT
130 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* *
20280333 TCATAACTTCGGTTCCGTAAAG
195 TTATAACTTCGGTTCCTTAAAG
* * * * ** * *
20280355 TATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCTATTCTCTAGAATTAC-CAGCA
1 TATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAAT-CGCATCA
* *
20280419 TTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACG
65 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
** * * *
20280484 TGAGAATTG-TT-TCTCTTCATTCTTGGATGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTT
130 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* *
20280547 TTATAACATCGGTTCCTTATAG
195 TTATAACTTCGGTTCCTTAAAG
* * * * * * **
20280569 TATTCAAGACGATACATTCCTTCCAGCAA-CTTTCTAAACATTCTATGCTTGAAAAATCGCATCA
1 TATTCAAGACGATCCATTCCTTCAAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCA
* * * * * *
20280633 TTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTATTTAAATTGAAAACTTATTTATG
65 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * *
20280697 TGAGAATTGTTTCTCTCTCTTGGTTCTTGGACGAATTTCCAAAATTTTTAAACTTTTACGAGTTC
130 TGAGAATTG-TT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
***
20280762 TTTTATAACTTAAATTCCTTAAAG
193 TTTTATAACTTCGGTTCCTTAAAG
* * *
20280786 TATTCAAGACGATCGATTCCTTTAAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATCAT
1 TATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
* * * *** * **
20280850 TTAGTCTAAATAGATTT-TCATTTTGTAAACAAGTTTTGGTGTTTAAAACGAAAATTTATTTATA
66 TTGGTCTAAATAG-TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * * * **
20280914 TGAGAATTG-TT-TCTCTTGGCTGTTGGATGATCTTCCAAACTTTTCAAACTTTTACAAGACCTT
130 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* *
20280977 TTATAACTT-GGATCCTTACAG
195 TTATAACTTCGGTTCCTTAAAG
* * *
20280998 TATTCAAGA-GATTACATTCCATT-AAGAAATTTTTCGAACATTCCATGCTCCGGAAATCGCATC
1 TATTCAAGACGA-TCCATTCC-TTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * *
20281061 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTCTGGTCTTAGAATTAAACACTTATTTAA
64 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * * *
20281126 GTTAGAATTGTTTCTCTATTGGTTCTTGGATGAACTTCCAAATTTGTCAAACTTTTACGAGTTCT
129 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* * * *
20281191 TTTATTATTTCAGTTCCATAAAG
194 TTTATAACTTCGGTTCCTTAAAG
* * * * ***
20281214 TATTCAAGACGGTCCATTCTTTCGAGCAA-TTTTCTGAACATTCTATGCTCAAAAAATCGCATCA
1 TATTCAAGACGATCCATTCCTTCAAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCA
* * ** * * *
20281278 TTT-TTCTAAATTGTTTGTCATTTTGTAATTAAATTTTTGTCTTTGAATTAAATACTTATTTACG
65 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * *
20281342 TGAGAATTATTTCTCTTTTGCTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGATTTCTT
130 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * * *
20281407 TTATAATTTCAGTTCCATACAG
195 TTATAACTTCGGTTCCTTAAAG
*
20281429 TATTCAAGACGATCGATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
1 TATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
* * * * * *
20281494 TTCGTCGAAATAGTTTTTCATTTTGTAAAAAAGGTTTTGTTGTTTGAATTAAAAACTTATTTACG
66 TTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
20281559 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTAGGAGTTCTT
130 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* *
20281624 TCATAACTTTGGTTCCTTAAAG
195 TTATAACTTCGGTTCCTTAAAG
20281646 TATT
1 TATT
20281650 TCGTCTAAAT
Statistics
Matches: 1598, Mismatches: 293, Indels: 75
0.81 0.15 0.04
Matches are distributed among these distances:
204 159 0.10
205 2 0.00
206 11 0.01
211 3 0.00
212 62 0.04
213 298 0.19
214 121 0.08
215 270 0.17
216 415 0.26
217 251 0.16
218 6 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
TATAACTTCGGTTCCTTAAAG
Found at i:20280859 original size:430 final size:424
Alignment explanation
Indices: 20279507--20281649 Score: 2158
Period size: 430 Copynumber: 5.0 Consensus size: 424
20279497 GTTCTTTTAT
* * * * * * *
20279507 TATTCAAGACGATCCATTCCTTTGACCAATTTTCGAACATTCCTTTATCTGGAAATTGTATCATT
1 TATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATCATT
* * *** *
20279572 TAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAGGAAAACTTATTTACATG
66 TAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTG
* * * * *
20279637 AGAATTGTTTCTCTTGGC-TATTGGACAAACTTCCGAATTTTTCAAACTTTTACAAGTTCTTTTA
131 AGAATTGTTTCTCTT--CTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
* * * * *
20279701 TAACTTGGTTCCTTACAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCCT-AACATTTCAT
194 TAACTCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCAAGCAA-TTT-CTGAACATTCCAT
* * * * * *** *
20279765 GCTTGAGAAATCGCATTATTTGGTCTAAATAGTTTGTCATTTTGTAAAGAACTTCTGGTCCCTCA
257 GCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTAA
* * * * *
20279830 ATTAAATACTTATTTATGTGAGAATTGTTTCGCT-TT-GCTGTTGGACGAACTT-C-------CA
322 ATTAAA-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATTTCCAAATAGTCA
* * *
20279885 AACTTTTTCGAGTTCTTTTATAACTT-GGATCCTTATAG
386 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * * ** * *
20279923 CATTCAAGATGATCCATTCCATCAAGCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATCAT
1 TATTCAAGACGATCCATTCCTTTGAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATCAT
* * * * * * *
20279988 TTGGTCTATATAGTTTGTCATTTTATAAACAACTTTTTGTCTTTGAATTAAATACTTATTTACGT
65 TTAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGT
* * * * * *
20280053 GAGAATTATTTCTCTTTTGCTTCTTGGACAAACTCCCAAACTTGTCAAACTTTAACGAGTTCTAT
130 GAGAATTGTTTCTC--TT-CTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
* * * * * * * *
20280118 TATAATTTCAGTTCCATAAAGTAGTCAAGATGATACATTCCTTCGAGCAATTTGCCGAACATTCC
192 TATAA-CTCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCAAGCAATTT-CTGAACATTCC
* * * *
20280183 AAGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTATAA-AGGTTTTGTTGTT
255 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAAGTTTTGGTGTT
* ** * *
20280247 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACTTTCGAACTA
319 TAAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TTTCCAAATA
* *
20280312 GTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCGTAAAG
382 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * ** * *
20280355 TATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCTATTCTCTAGAATTAC-CAGCA
1 TATTCAAGACGATCCATTCCTTTGAGCAA-TTTTTGAACATTCCATTCTCGGGAAAT-CGCATCA
* *
20280419 TTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACG
64 TTTAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACG
* * *
20280484 TGAGAATTGTTTCTCTTCATTCTTGGATGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTT
129 TGAGAATTGTTTCTCTTC-TTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * *
20280549 ATAACATCGGTTCCTTATAGTATTCAAGACGATACATTCCTTCCAGCAACTTTCTAAACATTCTA
193 ATAAC-TCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCAAGCAA-TTTCTGAACATTCCA
* * * * *
20280614 TGCTTGAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTATTTA
256 TGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTA
* *
20280678 AATTGAAAACTTATTTATGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGACGAATTTCCAAAATT
321 AATT-AAAACTTATTTACGTGAGAATTG-TT-TCTCTCTTGGTTCTTGGACGAATTTCC-AAATA
* * ***
20280743 TTTAAACTTTTACGAGTTCTTTTATAACTTAAATTCCTTAAAG
382 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* *
20280786 TATTCAAGACGATCGATTCCTTTAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATCATT
1 TATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATCATT
* * * * * **
20280851 TAGTCTAAATAGATTT-TCATTTTGTAAACAAGTTTTGGTGTTTAAAACGAAAATTTATTTATAT
66 TAGTCTAAATAG-TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGT
* * * * * * **
20280915 GAGAATTGTTTCTCTTGGC-TGTTGGATGATCTTCCAAACTTTTCAAACTTTTACAAGACCTTTT
130 GAGAATTGTTTCTCTT--CTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * *
20280979 ATAACTTGGATCCTTACAGTATTCAAGA-GATTACATTCCATT-AAGAAATTTTTCGAACATTCC
193 ATAACTCGGTTCCTTACAGTATTCAAGACGA-TACATTCC-TTCAAGCAATTTCT-GAACATTCC
* * *
20281042 ATGCTCCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTCTGGT-CT
255 ATGCT-CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTT
* * * * *
20281105 TAGAATTAAACACTTATTTAAGTTAGAATTGTTTCTCTATTGGTTCTTGGATGAACTTCCAAATT
319 TA-AATTAAA-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATTTCCAAA-T
* * * * *
20281170 TGTCAAACTTTTACGAGTTCTTTTATTATTTCAGTTCCATAAAG
381 AGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * * ***
20281214 TATTCAAGACGGTCCATT-CTTTCGAGCAATTTTCTGAACATTCTATGCTCAAAAAATCGCATCA
1 TATTCAAGACGATCCATTCCTTT-GAGCAATTTT-TGAACATTCCATTCTCGGGAAATCGCATCA
* * ** * * * *
20281278 TTT-TTCTAAATTGTTTGTCATTTTGTAATTAAATTTTTGTCTTTGAATTAAATACTTATTTACG
64 TTTAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACG
* * *
20281342 TGAGAATTATTTCTCTTTTGCTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGATTTCTT
129 TGAGAATTGTTTCTC--TT-CTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * * *
20281407 TTATAATTTCAGTTCCATACAGTATTCAAGACGAT-CGATTCCTTCAAGCAATTTTTCGAACATT
191 TTATAA-CTCGGTTCCTTACAGTATTCAAGACGATAC-ATTCCTTCAAGCAATTTCT-GAACATT
* * * * * *
20281471 CCATGCTCGGGAAATCGCATCATTTCGTCGAAATAGTTTTTCATTTTGTAAAAAAGGTTTTGTTG
253 CCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTG
* * *
20281536 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC
317 TTTAAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TTTCCAAA
* * *
20281601 TAGTCAAACTTTTAGGAGTTCTTTCATAACTTTGGTTCCTTAAAG
380 TAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
20281646 TATT
1 TATT
20281650 TCGTCTAAAT
Statistics
Matches: 1422, Mismatches: 249, Indels: 96
0.80 0.14 0.05
Matches are distributed among these distances:
416 27 0.02
417 89 0.06
418 2 0.00
419 47 0.03
420 122 0.09
421 7 0.00
422 9 0.01
423 2 0.00
427 10 0.01
428 151 0.11
429 157 0.11
430 356 0.25
431 208 0.15
432 219 0.15
433 16 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (424 bp):
TATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATCATT
TAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTG
AGAATTGTTTCTCTTCTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
ACTCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCAAGCAATTTCTGAACATTCCATGCTC
GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTAAATTA
AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATTTCCAAATAGTCAAACTT
TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
Found at i:20281223 original size:645 final size:641
Alignment explanation
Indices: 20279241--20298195 Score: 12530
Period size: 621 Copynumber: 30.1 Consensus size: 641
20279231 CGTATCACTC
* *
20279241 TTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCAGTT-CA
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCA
* * * ** *
20279305 TTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCTATTCTCGGGAAATAG
66 -TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATCG
* * * * * * *
20279370 CAGCATTTGGTGTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTCTTTGAATCAAAAAGTTAT
130 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTAT
* * * * *
20279435 TTACGTGACAATTGTTTCTC-TTAG-TTCTTGGACAAACTTCCGAACTTGTCAAACTTTTACTAG
195 TTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGAG
* ** *
20279498 TTC---------TT---TT--AT----TATTCAAGACGATCCATTCCTTTGACCAATTTTCGAAC
260 TTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGAAC
* ** * * *
20279545 ATTCCTTTATCTGGAAATTGTATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
325 ATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* ** * *
20279610 TCTTTAAAAGGAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTATTGGACAAACTTCCGAAT
390 TGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTATTGGAAAAACTTCCGAAC
*
20279675 TTTTCAAACTTTTACAAGTTCTTTTATAACTTGGTTCCTTACAGTATTCAAGACAATCCATTCCT
455 TTTTCAAACTTTTACAAGTTCTTTTATAACTTGGTTCCTTACAGTATTCAAGA-GATCCATTCCT
* * * *
20279740 TCGAGCAATTTTCCTAACATTTCATGCT-TGAGAAATCGCATTATTTGGTCTAAATAGTTTGTCA
519 TCGAGCAATTTTTCGAACATTCCATGCTCTG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* * * * * *
20279804 TTTTGTAAAGAACTTCTGGTCCCTCAATTAAATACTTATTTATGTGAGAATTGTTTCGCT
583 TTTTGTAAACAACTTCTGGT-CTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCT
* * * * * *
20279864 TT-GCTGTTGGACGAAC-TT----C----CAAACTTTTTCGAGTTCTTTTATAACTT-GGATCCT
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCA
* * * * * * **
20279918 TATAGCATTCAAGATGATCCATTCCATCAAGCAATTTT-TCAAACATTCCATGCTCGGGAAATCG
66 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-AAACATTCTATGCTCGAAAAATCG
* * * *
20279982 CATCATTTGGTCTATATAGTTTGTCATTTTATAAACAACTTTTTGTCTTTGAATTAAATACTTAT
130 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTAT
* *
20280047 TTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTCCCAAACTTGTCAAACTTTAACGAG
195 TTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGAG
* * * * * *
20280112 TTCTATTATAATTTCAGTTCCATAAAGTAGTCAAGATGATAC-ATTCCTTCGAGCAATTTGCCGA
260 TTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGAT-CGATTCCTTCAAGCAATTT-TCGA
* * * *
20280176 ACATTCCAAGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTATAA-AGGTTT
323 ACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTA-AACAAGTTT
* * * * * * *
20280240 TGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACTTT
387 TGGTGTTTAAAATAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGCTATTGGAAAAACTTC
** * * * *
20280305 CGAACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCGTAAAGTATTCAAGACGATCC
450 CGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GATCC
* * * * * *
20280370 ATTCCTTCGAGCAATTTTTTGAACATTCTATTCTCTAGAATTAC-CAGCATTTGGTCTAAATAGT
513 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAAT-CGCATCATTTGGTCTAAATAGT
* * * * *
20280434 TTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTC
577 TTGTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC
20280499 -
641 T
** * * * * *
20280499 TTCATTCTTGGATGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACATCGGTTCCT
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCA
* * * * *
20280564 TATAGTATTCAAGACGATACATTCCTTCCAGCAACTTTCTAAACATTCTATGCTTGAAAAATCGC
66 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATCGC
* * * *
20280629 ATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTATTTAAATTGAAA-ACTTAT
131 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAATACTTAT
* * * * * * * *
20280692 TTATGTGAGAATTGTTTCTCTCTCTTGGTTCTTGGACGAATTTCCAAAATTTTTAAACTTTTACG
195 TTACGTGAGAATTATTTCTCT-T-TTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACG
* * * * *
20280757 AGTTCTTTTATAACTTAAATTCCTTAAAGTATTCAAGACGATCGATTCCTTTAAGCAATTTTTGA
258 AGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGA
* *
20280822 ACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGATTTTCATTTTGTAAACAAGTTTT
323 ACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
** * * * ** * *
20280887 GGTGTTTAAAACGAAAATTTATTTATATGAGAATTGTTTCTCTTGGCTGTTGGATGATCTTCCAA
388 GGTGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTATTGGAAAAACTTCCGA
** * *
20280952 ACTTTTCAAACTTTTACAAGACCTTTTATAACTTGGATCCTTACAGTATTCAAGAGATTACATTC
453 ACTTTTCAAACTTTTACAAGTTCTTTTATAACTTGGTTCCTTACAGTATTCAAGAGA-TCCATTC
* * *
20281017 CATT-AAGAAATTTTTCGAACATTCCATGCTCCGGAAATCGCATCATTTGGTCTAAATAGTTTGT
517 C-TTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* *
20281081 CATTTTGTAAACAACTTCTGGTCTTAGAATTAAACACTTATTTAAGTTAGAATTGTTTCTCT
581 CATTTTGTAAACAACTTCTGGTCTT-GAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCT
* * * * * *
20281143 ATTGGTTCTTGGATGAACTTCCAAATTTGTCAAACTTTTACGAGTTCTTTTATTATTTCAGTTCC
1 -TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCC
* * * *
20281208 ATAAAGTATTCAAGACGGTCCATTCTTTCGAGCAATTTTCTGAACATTCTATGCTCAAAAAATCG
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATCG
* * ** * *
20281273 CATCATTT-TTCTAAATTGTTTGTCATTTTGTAATTAAATTTTTGTCTTTGAATTAAATACTTAT
130 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTAT
*
20281337 TTACGTGAGAATTATTTCTCTTTTGCTTCTTGGA-AGAACTTCCGAACTTGTCAAACTTTTACGA
195 TTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACA-AACTTCCAAACTTGTCAAACTTTTACGA
* * *
20281401 TTTCTTTTATAATTTCAGTTCCATACAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTTCGA
259 GTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAA-TTTTCGA
* * *
20281466 ACATTCCATGCTCGGGAAATCGCATCATTTCGTCGAAATAGTTTTTCATTTTGTAAAAAAGGTTT
323 ACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAA-GTTT
* * * * * * ** *
20281531 TGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT
387 TGGTGTTTAAAATAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGCTATTGGAAAAACTTC
** ** * * *
20281596 CGAACTAGTCAAACTTTTAGGAGTTCTTTCATAACTTTGGTTCCTTAAAGTATTTCGTCTAAATA
450 CGAACTTTTCAAACTTTTACAAGTTCTTTTATAAC-TTGGTTCCTTACAGTA--T--TC--AAGA
* * * * ** * * ** * *
20281661 GTTCGTCATT--TTGGAAACAAGTTTT-GGTC-TT---TGAT-T-TAAA-AAC-TTATTTACGT-
508 GATC--CATTCCTTCG-AGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTT-GGTC
* * * * * ** * ** * *
20281714 GAGAATTGTTTCTC-TTGGTTCTTGGATGAACTTCCGAACTTG---T-CAAAC-T-TTT-A-CGA
569 TA-AATAGTTTGTCATT--TT-GT-AAACAACTTCTGGTCTTGAATTAAAAACTTATTTAAGTGA
* *
20281770 G--TTCTTTTATAACT
629 GAATT-GTTTCT--CT
* * * * * **
20281784 TCGGTTCCTT--AC--AGTATTC-AA---GACAATACATTCCTT-TGGGCAACTTTCTA-AACAT
1 TTGGTT-CTTGGACGAACT-TTCGAACTTGTCAA-AC-TT--TTACGAG-TTCTTT-TATAAC-T
* * * * *
20281839 TCTA-TGCTCA-AAA--AATC---AC-AT-CATT-TTTCTA--AATAGTTTGT---CATT-T-TG
57 TC-AGTTC-CATAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT--TTTCTAAACATTCTATG
* ** **
20281887 -T--AAACAA--G--T--TTTGGTCTTTAA-A--TT-T-A------AAAC---TTATT-AAC-AA
118 CTCGAAA-AATCGCATCATTTGGTC-TAAATAGTTTGTCATTTTGTAAACAAGTT-TTGGTCTTT
* * *
20281927 G-A--------------------GAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCAAACTT
180 GAATTAAATACTTATTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACA-AACTTCCAAACTT
* * * ** * * *
20281970 TTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTT
244 GTCAAACTTTTACGAGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTT
* * **
20282035 TAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTT
309 CAAGCAATTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTT
* * * * * *
20282100 TGTAAACAAGTTTCGATCTCTAAAACGAAAAA-TTATTTACATGAGAATTGTTTCTCGTT-GCTG
374 TGTAAACAAGTTTTGGTGTTTAAAA-TAAAAACTTATTTACATGAGAATTGTTTCTC-TTGGCTA
** * * * * *
20282163 TTGGACGAACTTCC-ACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGATCCTTATAGCA
437 TTGGAAAAACTTCCGA-ACTTTTCAAACTTTTACAAGTTCTTTTATAACTTGGTTCCTTACAGTA
* *
20282227 TTCAAGACGATCCATTCCATCAAGCAATTTTTCGAACATTCCATGCTC-GGAAAATCGCATCATT
501 TTCAAGA-GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGG-AAATCGCATCATT
* * * * *
20282291 TGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTACGTG
564 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAAGTG
20282356 AGAATTGTTTCTCTT
628 AGAATTGTTTCTC-T
* ** * * * * * *
20282371 TTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATCTATTGTAATTTCTA-TTCC
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-AGTTCC
* * ** *
20282435 ATAAAGTATTC-A-A-GAT-GA-----T--A-C-A--TTC---A-A----A-GCTGGGGAAATCA
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATCG
* * * * * *
20282476 CATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTTGTTGTTTGAACTAAAAACTTA
130 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAATACTTA
* * * * * * * * *
20282540 TTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGA
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
* * * * * * * *
20282605 GTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGA
259 GTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCA-ATTTTCGA
* * ** * * * * * *
20282670 ACATTCTATTCTCCAGAAATAGCAGCATTTGGTGTAAATAGTTTGTCATTTTGGAAACAAGTTTT
323 ACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
* * * * ** * * **
20282735 GGTCTTT-GATTCAAAAACTTATTTACGTGAGAATTAATTCTCTTGGTTCTTGGACGAACTTCCG
388 GGTGTTTAAAAT-AAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTATTGGAAAAACTTCCG
* * * * *
20282799 AACTTGTT-AAACTGTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTACTCAAGACGATCCA
452 AACTT-TTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GATCCA
** ** * * * *
20282863 TTTATTTTAGCAATTTTT-AAACATTCCAAT-TTC-GGAAAACTGCATCATTTAGTCTAAATAGT
514 TTCCTTCGAGCAATTTTTCGAACATTCC-ATGCTCTGGAAATC-GCATCATTTGGTCTAAATAGT
* * * * **
20282925 TTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTA-TTAACGTGAGAATTGTTTCT
577 TTGTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAA-GTGAGAATTGTTTCT
20282989 CT
640 CT
* * * * *
20282991 CTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAAGTTTTACGAGTTCTTTTATAACTTC-GATTC
1 -TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTC
* * ** * * ** **
20283055 CTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTT-TGAACATTCCATTATCGGGAAATC
64 CATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATC
* * * * ** ** *
20283119 GCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAA-AATT
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TTGAATTAAATACTT
* * * * * * *
20283183 ATTTACGTGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCCACACTTTTCAAACTTTTTCG
193 ATTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACG
* ** * * * * * *
20283246 AGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCA
258 AGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAA-TTTTCG
* * * * *
20283310 AACATTCCATGCTCGGAAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTT
322 AACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* * * * * * * * * *
20283375 TCGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCC
387 TGGTGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTC-TTGGC-TATTGGAAAAACTTC
* * * * * * * * ** * * *
20283440 CGAACTTGTCAATCTTTAACGAGATCTATTGTAATTTCTATTCCATAAAGTATTC-A-AGAT-GA
450 CGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGAGATCCA
** *
20283502 -----T--A-C-A---TTC--A-A----A-GCTGGGGAAATCACATCATTTGGTCTAAATAGTTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTT
* ** * * * *
20283547 GTCAATTTGTAAA-ATGGTTTTGTTGT-TTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTC
579 GTCATTTTGTAAACA-ACTTCTG--GTCTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC
20283610 T
641 T
* * * * *
20283611 CTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTCTTTCATAACTTC-GATTC
1 -TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTC
* * * * * * *
20283675 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTAAACATTCTATTCTCCAGAAATA
64 CATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATC
* * * *
20283740 GCAGCATTTGGTGTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTG-ATTCAAAAACTT
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAATACTT
* * * * * *
20283804 ATTTACGTGAGAATTAATTCTC--TTGGTTCTTGGACGAACTTCCGAACTTGTTAAACTGTTACG
193 ATTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACG
* * * ** *
20283867 AGTTCTTTTAT-ATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTG
258 AGTTCTTTTATAAT-TTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCG
* *
20283931 AACATTCCAAT-TTC-GGAAAACTGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGT
322 AACATTCC-ATGCTCGGGAAATC-GCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGT
* * * * * * *
20283994 TTTGGTCTTTAAAACAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACT
385 TTTGGTGTTTAAAATAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGCTATTGGAAAAACT
* * * * *
20284059 TCCAAACTTTTCAAAGTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGAT
448 TCCGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GAT
** ** * *
20284124 CCATTCCTTTAAGCAATTTTT-GAACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAG
511 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAG
* * * * * * ** *
20284188 TTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAA-TTATTTACGTGAGAATTGTTTC
576 TTTGTCATTTTGTAAACAACTTCTGGTCT-T-GAATTAAAAACTTATTTAAGTGAGAATTGTTTC
*
20284252 TCG
639 TCT
* * * * * * *
20284255 TT-GCTGTTGGACGAAC-TTCCACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTT-GGATCC
1 TTGGTTCTTGGACGAACTTTCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCC
* * * * * * *
20284317 TTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTT-TCAAACATTCCATGCTCGGAAAATC
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-AAACATTCTATGCTCGAAAAATC
* * *
20284381 GCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTA
* * * * *
20284446 TTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGA
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
* * * *
20284511 GATCTATTGTAATTTCTATTCCATAAAGTATTC-A-A-GAT-GA-----T--A-C-A--TTC--A
259 GTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGAA
* * * * * *
20284559 -A----A-GCTGGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTT
324 CATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACA-AGTTTT
* * * * * * * ** *
20284617 GTTGTTTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTC
388 GGTGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTCT-TGGC-TATTGGAAAAACTTCC
* ** * * * * *
20284682 GATCTAGTCAAACTTTAACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCA
451 GAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GATCCA
* * * * ** * * *
20284747 TTCCTTCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATAGCAGCATTTGGTGTAAATAGTTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * **
20284812 GTCATTTTGGAAACAAGTTTTGGTCTTTG-ATTCAAAAACTTATTTACGTGAGAATTAATTCTC-
579 GTCATTTTGTAAACAACTTCTGGTC-TTGAATT-AAAAACTTATTTAAGTGAGAATTGTTTCTCT
* * * * *
20284875 TTGGTTCTTGGACGAACTTCCGAACTTGTTAAACTGTTACGAGTTCTTTTATATCTTCAGTTCCT
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCA
** * * * *
20284940 TAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTT-TGAACATTCCAAT-TTCGGAAAA-CT
66 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATT-CTATGCTCGAAAAATC-
* * * ** *
20285002 GCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTA
* * * * * *
20285067 TTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCAAACTTTTCAAAGTTTTACG
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACA-AACTTCCAAACTTGTCAAACTTTTACG
* * * * * * *
20285131 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGA
258 AGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGA
** *
20285196 ACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTT
323 ACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
* * * * * * **
20285261 GATCTCTAAAACGAAAAA-TTATTTACGTGAGAATTGTTTCTCGTT-GCTGTTGGACGAACTTCC
388 GGTGTTTAAAA-TAAAAACTTATTTACATGAGAATTGTTTCTC-TTGGCTATTGGAAAAACTTCC
* * * * *
20285324 -ACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGATCCTTATAGCATTCAAGACGATCCA
451 GA-ACTTTTCAAACTTTTACAAGTTCTTTTATAACTTGGTTCCTTACAGTATTCAAGA-GATCCA
* * * *
20285388 TTCCATCAAGCAATTTTTCAAACATTCCATGCTC-GGAAAATCGCATCATTTGGTCTATATAGTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGG-AAATCGCATCATTTGGTCTAAATAGTT
* * * *
20285452 TGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCT
578 TGTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC-
20285517 T
641 T
* * ** * * * * * *
20285518 TTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATCTATTGTAATTTCTA-TTCC
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-AGTTCC
* * ** *
20285582 ATAAAGTATTC-A-A-GAT-GA-----T--A-C-A--TTC--AA-A--GT-TG---GGGAAATCA
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATCG
* * * * *
20285623 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTTGTTGTTTGAACTAAAAACTTA
130 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAATACTTA
* * * ** * * * * *
20285687 TTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGATGAACTTTCGATCTAGTCAAACTTTAACGA
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
* * ** * * * *
20285752 GTTCTTTCATAACTTT-GATTCTTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTG
259 GTTCTTTTATAA-TTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCA-ATTTTCG
* * * ** * * * * *
20285816 AATATTCTATTCTCCAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTT
322 AACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* * * * ** * * **
20285881 TGGTCTTT-GATTCAAAAACTTATTTACGTGAGAATTAATTCTCTTGGTTCTTGGACGAACTTCC
387 TGGTGTTTAAAAT-AAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTATTGGAAAAACTTCC
* * * * *
20285945 GAACTTGTT-AAACTGTTACGAGTTCTTTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCC
451 GAACTT-TTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GATCC
** * * *
20286009 ATTCCTTTTAGCAATTTTT-GAACATTCCAAT-TTC-GGAAAACTGCATCATTTAGTCTAAATAG
513 ATTCCTTCGAGCAATTTTTCGAACATTCC-ATGCTCTGGAAATC-GCATCATTTGGTCTAAATAG
* * * * **
20286071 TTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTA-TTAACGTGAGAATTGTTTC
576 TTTGTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAA-GTGAGAATTGTTTC
20286135 TCT
639 TCT
* * * *
20286138 CTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTC
1 -TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTC
* * ** * * ** **
20286202 CTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTT-TGAACATTCCATTATCGGGAAATC
64 CATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATC
* * * * ** ** *
20286266 GCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAA-AATT
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TTGAATTAAATACTT
* * * * * * *
20286330 ATTTACGTGAGAATTTTTTCTC-GTTGC-TGTTGGACGAACTTCCACACTTTTCAAACTTTTTCG
193 ATTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACG
* ** * * * * * *
20286393 AGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCA
258 AGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAA-TTTTCG
* * * * * *
20286457 AACATTCCATGCTCGGAAAATCGTATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTT
322 AACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* * * * * * * * ** *
20286522 TCGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCC
387 TGGTGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTC-TTGGC-TATTGGAAAAACTTC
* * * * * * * * ** * * *
20286587 CGAACTTGTCAATCTTTAACGAGATCTATTGTAATTTCTATTCCATAAAGTATTC-A-AGAT-GA
450 CGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGAGATCCA
** *
20286649 -----T--A-C-A---TTC--A-A----A-GCTGGGGAAATCACATCATTTGGTCTAAATAGTTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTT
* ** * * * *
20286694 GTCAATTTGTAAA-ATGGTTTTGTTGT-TTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTC
579 GTCATTTTGTAAACA-ACTTCTG--GTCTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC
20286757 T
641 T
* * * * *
20286758 CTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTCTTTCATAACTTC-GATTC
1 -TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTC
** * * * * * * *
20286822 TTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATA
64 CATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATC
* * * * *
20286887 GCAGCATTTGGTGTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTCTTTG-ATTCAAAAACTT
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAATACTT
* * * * * *
20286951 ATTTACGTGAGAATTAATTCTC--TTGGTTCTTGGACGAACTTCCGAACTTGTTAAACTGTTACG
193 ATTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACG
* * * * * ** ** *
20287014 AGTTCTTTTATAACTTCAGTTCCTTAAAGTACTCAAGACGATCCATTTATTTTAGCAATTTTTGA
258 AGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGA
* *
20287079 ACATTCCAAT-TTC-GGAAAACTGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTT
323 ACATTCC-ATGCTCGGGAAATC-GCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTT
* * * * * * *
20287142 TTGGTCTTTAAAACAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTT
386 TTGGTGTTTAAAATAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGCTATTGGAAAAACTT
* * * * *
20287207 CCAAACTTTTCAAAGTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATC
449 CCGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GATC
** ** * *
20287272 CATTCCTTTAAGCAATTTTT-GAACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGT
512 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGT
* * * * * * **
20287336 TTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAA-TTATTTACA-TGAGAATTGTTTC
577 TTGTCATTTTGTAAACAACTTCTGGTCT-T-GAATTAAAAACTTATTTA-AGTGAGAATTGTTTC
*
20287399 TCG
639 TCT
* * * * * * *
20287402 TT-GCTGTTGGACGAAC-TTCCACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTT-GGATCC
1 TTGGTTCTTGGACGAACTTTCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCC
* * * * * * *
20287464 TTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTT-TCAAACATTCCATGCTCGGAAAATC
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-AAACATTCTATGCTCGAAAAATC
* * *
20287528 GCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTA
* * * * * *
20287593 TTTACGTGAGAATTGTTTCCCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGA
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
* * * *
20287658 GATCTATTGTAATTTCTATTCCATAAAGTATTC-A-A-GAT-GA-----T--A-C-A--TTC--A
259 GTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGAA
* * * * *
20287706 -A----A-GCTGGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT
324 CATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACA-AGTTTT
* * * * * * * ** *
20287764 GTTGTTTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTC
388 GGTGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTCT-TGGC-TATTGGAAAAACTTCC
* ** * * * * * *
20287829 GATCTAGTCAAACTTTAACGAGTTCTTTCATAACTTCGATTCTTTAAAGTATTCAAGACGATCCA
451 GAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GATCCA
* * * * ** * *
20287894 TTCCTTCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATAGCAGCATTTGGTCTAAATAGTTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * **
20287959 GTCATTTTGGAAACAAGTTTTGGTCTTTG-ATTCAAAAACTTATTTACGTGAGAATTAATTCTC-
579 GTCATTTTGTAAACAACTTCTGGTC-TTGAATT-AAAAACTTATTTAAGTGAGAATTGTTTCTCT
* * * *
20288022 TTGGTTCTTGGACGAACTTCCGAACTTGTTAAACTGTTACGAGTTCTTTTATAACTTCAGTTCCT
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCA
* ** ** * * * *
20288087 TAAAGTACTCAAGACGATCCATTTATTTTAGCAATTTT-TGAACATTCCAAT-TTCGGAAAA-CT
66 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATT-CTATGCTCGAAAAATC-
* * * ** *
20288149 GCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTA
* * * * *
20288214 TTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCAAACTTTTCAAACTTTTACG
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACA-AACTTCCAAACTTGTCAAACTTTTACG
* * * * * * *
20288278 AGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGA
258 AGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGA
** *
20288342 ACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTC
323 ACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
* * * * * **
20288407 GATCTCTAAAACGAAAAA-TTATTTACATGAGAATTGTTTCTCGTT-GCTGTTGGACGAACTTCC
388 GGTGTTTAAAA-TAAAAACTTATTTACATGAGAATTGTTTCTC-TTGGCTATTGGAAAAACTTCC
* * * * *
20288470 -ACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGATCCTTATAGCATTCAAGACGATCCA
451 GA-ACTTTTCAAACTTTTACAAGTTCTTTTATAACTTGGTTCCTTACAGTATTCAAGA-GATCCA
* * * * * *
20288534 TTCCATCAAGCAATTTTTCGACCATTCCATGCTCGGGAAATCGCATCATTTGGTATATATAGTTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
20288599 GTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCT
579 GTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCT
* ** * * * * * * **
20288663 TCTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATCTATTGTAATTTTTGTTCC
1 T-TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCC
* * ** *
20288728 ATAAAGTATTC-A-A-GAT-GA-----T--A-C-A--TTC---A-A----A-GCTGGGGAAATCA
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATCG
* * * *
20288769 CATCATTTGGTCTAAATAGTTTGTCATTTTG-AAA-AATGGTTTTGTTGTTTGAACTAAAAACTT
130 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA--GTTTTGGTCTTTGAATTAAATACTT
* * * * * * * * *
20288832 ATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACG
193 ATTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACG
* * * * * * * **
20288897 AGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTGTTTTA
258 AGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAAT-TTTCG
* * ** * * * * *
20288962 AACATTCTATTCTCCAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTT
322 AACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* * * * ** * * **
20289027 TGGTCTTT-GATTCAAAAACTTATTTACGTGAGAATTAATTCTCTTGGTTCTTGGACGAACTTCC
387 TGGTGTTTAAAAT-AAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTATTGGAAAAACTTCC
* * * * *
20289091 GAACTTGTT-AAACTGTTACGAGTTCTTTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCC
451 GAACTT-TTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GATCC
** * * *
20289155 ATTCCTTTTAGCAATTTTT-GAACATTCCAAT-TTC-GGAAAACTGCATCATTTAGTCTAAATAG
513 ATTCCTTCGAGCAATTTTTCGAACATTCC-ATGCTCTGGAAATC-GCATCATTTGGTCTAAATAG
* * * * **
20289217 TTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTA-TTAACGTGAGAATTGTTTC
576 TTTGTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAA-GTGAGAATTGTTTC
20289281 TCT
639 TCT
* * * *
20289284 CTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTC
1 -TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTC
* * ** * * ** **
20289348 CTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTT-TGAACATTCCATTATCGGGAAATC
64 CATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATC
* * * * ** ** *
20289412 GCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAA-AATT
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TTGAATTAAATACTT
* * * * * * * *
20289476 ATTTACATGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCCACACTTTTCAAACTTTTTCG
193 ATTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACG
* ** * * * * *
20289539 AGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCG
258 AGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAA-TTTTCG
* * * * * *
20289603 AACATTCCATGCTTGGAAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTT
322 AACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* * * * * * * * * *
20289668 TCGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCC
387 TGGTGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTC-TTGGC-TATTGGAAAAACTTC
* * * * * * * * ** * * *
20289733 CGAACTTGTCAATCTTTAACGAGATCTATTGTAATTTCTATTCCATAAAGTATTC-A-AGAT-GA
450 CGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGAGATCCA
** *
20289795 -----T--A-C-A---TTC--A-A----A-GCTGGGGAAATCACATCATTTGGTCTAAATAGTTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTT
** * * * *
20289840 GTCATTTTGTAAA-ATGGTTTTGTTGT-TTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTC
579 GTCATTTTGTAAACA-ACTTCTG--GTCTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC
20289903 T
641 T
* * * * *
20289904 CTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTCTTTCATAACTTC-GATTC
1 -TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTC
* * * * * * * * *
20289968 CTTAAAGTATTCAAGACGATCCATCCCTTCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATA
64 CATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATC
* *
20290033 GCAGCATTTGGTCTAAATAGTTTGTCATTTTAG-AAACAAGTTTTGGTCTTTG-ATTCAAAAACT
129 GCATCATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTTTTGGTCTTTGAATT-AAATACT
* * * * * * *
20290096 TATTTACGTGAGAATTAATTCTC--TTGGTTCTTGGACGAACTCCCGAACTAGTTAAACTTTTAC
192 TATTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTAC
* ** * * * ** * *
20290159 GAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATAC-ATTCCTTCTGGGAACTTTC
257 GAGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGAT-CGATTCCTTCAAGCAATTTTC
* * ** * *
20290223 TAAACATTCTATGCTCGAAAAATCGCATCATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGT
321 -GAACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGT
* * * * * * * *
20290287 TTTGGTCTTTAAATTTAAAACTTATTT-CGTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAA
385 TTTGGTGTTTAAAATAAAAACTTATTTACATGAGAA-TTGTT-T--CTCTTGGCTATTGGAAAAA
* * * *
20290351 CTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATG
446 CTTCCGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-G
** ** * *
20290416 ATCCATTCCTTTAAGCAATTTTT-GAACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAAT
509 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAAT
* * * * * * ** *
20290480 AGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAA-TTATTTACGTGAGAATTGTT
574 AGTTTGTCATTTTGTAAACAACTTCTGGTCT-T-GAATTAAAAACTTATTTAAGTGAGAATTGTT
*
20290544 TCTCG
637 TCTCT
* * * * * * *
20290549 TT-GCTGTTGGACGAAC-TTCCACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTT-GGATCC
1 TTGGTTCTTGGACGAACTTTCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCC
* * * * * * *
20290611 TTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTT-TCAAACATTCCATGCTCGGAAAATC
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-AAACATTCTATGCTCGAAAAATC
* * *
20290675 GCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTA
* * * * *
20290740 TTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGA
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
* * * *
20290805 GATCTATTGTAATTTCTATTCCATAAAGTATTC-A-A-GAT-GA-----T--A-C-A--TTC--A
259 GTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGAA
* * * * *
20290853 -A----A-GCTGGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT
324 CATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACA-AGTTTT
* * * * * * * ** *
20290911 GTTGTTTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTC
388 GGTGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTCT-TGGC-TATTGGAAAAACTTCC
* ** * * * * * *
20290976 GATCTAGTCAAACTTTAACGAGTTCTTTCATAACTTTGATTCTTTAAAGTATTCAAGACGATCCA
451 GAACTTTTCAAACTTTTACAAGTTCTTTTATAAC-TTGGTTCCTTACAGTATTCAAGA-GATCCA
* * * * ** * *
20291041 TTCCTTCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATAGCAGCATTTGGTCTAAATAGTTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * **
20291106 GTCATTTTGGAAACAAGTTTTGGTCTTTG-ATTCAAAAACTTATTTACGTGAGAATTAATTCTC-
579 GTCATTTTGTAAACAACTTCTGGTC-TTGAATT-AAAAACTTATTTAAGTGAGAATTGTTTCTCT
* * * * *
20291169 TTGGTTCTTGGACGAACTTCCGAACTTGTTAAACTGTTACGAGTTCTTTTATATCTTCAGTTCCT
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCA
** * * * *
20291234 TAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTT-TGAACATTCCAAT-TTCGGAAAA-CT
66 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATT-CTATGCTCGAAAAATC-
* * * ** *
20291296 GCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTA
* * * * *
20291361 TTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCAAACTTTTCAAACTTTTACG
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACA-AACTTCCAAACTTGTCAAACTTTTACG
* * * * * * *
20291425 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGA
258 AGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGA
** *
20291490 ACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTT
323 ACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
* * * * * * **
20291555 GATCTCTAAAACGAAAAA-TTATTTACGTGAGAATTGTTTCTCGTT-GCTGTTGGACGAACTTCC
388 GGTGTTTAAAA-TAAAAACTTATTTACATGAGAATTGTTTCTC-TTGGCTATTGGAAAAACTTCC
* * * * *
20291618 -ACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGATCCTTATAGCATTCAAGACGATCCA
451 GA-ACTTTTCAAACTTTTACAAGTTCTTTTATAACTTGGTTCCTTACAGTATTCAAGA-GATCCA
* * * *
20291682 TTCCATCAAGCAATTTTTCAAACATTCCATGCTC-GGAAAATCGCATCATTTGGTCTATATAGTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGG-AAATCGCATCATTTGGTCTAAATAGTT
* * * *
20291746 TGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCT
578 TGTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC-
20291811 T
641 T
* ** * * * * * *
20291812 TTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATCTATTGTAATTTCTA-TTCC
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-AGTTCC
* * ** *
20291876 ATAAAGTATTC-A-A-GAT-GA-----T--A-C-A--TTC---A-A----A-GCTGGGGAAATCA
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATCG
* * * * * *
20291917 CATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTTGTTGTTTGAACTAAAAACTTA
130 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAATACTTA
* * * * * * * * *
20291981 TTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGA
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
* * * * * * * *
20292046 GTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGA
259 GTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCA-ATTTTCGA
* * ** * * * * *
20292111 ACATTCTATTCTCCAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTT
323 ACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
* * * * ** * * **
20292176 GGTCTTT-GATTCAAAAACTTATTTACGTGAGAATTAATTCTCTTGGTTCTTGGACGAACTTCCG
388 GGTGTTTAAAAT-AAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTATTGGAAAAACTTCCG
* * * * *
20292240 AACTTGTT-AAACTGTTACGAGTTCTTTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCCA
452 AACTT-TTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GATCCA
** * * *
20292304 TTCCTTTTAGCAATTTTT-GAACATTCCAAT-TTC-GGAAAACTGCATCATTTAGTCTAAATAGT
514 TTCCTTCGAGCAATTTTTCGAACATTCC-ATGCTCTGGAAATC-GCATCATTTGGTCTAAATAGT
* * * * **
20292366 TTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTA-TTAACGTGAGAATTGTTTCT
577 TTGTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAA-GTGAGAATTGTTTCT
20292430 CT
640 CT
* * * *
20292432 CTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTC
1 -TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTC
* * ** * * ** **
20292496 CTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTT-TGAACATTCCATTATCGGGAAATC
64 CATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATC
* * * * ** ** *
20292560 GCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAA-AATT
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TTGAATTAAATACTT
* * * * * * *
20292624 ATTTACGTGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCCACACTTTTCAAACTTTTTCG
193 ATTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACG
* ** * * * * *
20292687 AGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCG
258 AGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAA-TTTTCG
* * * * * * *
20292751 ACCATTCCATGCTCGGAAAATCGCATCATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTT
322 AACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* * * * * * * * ** *
20292816 TCGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTGCTTCTTGGACGAACTCCC
387 TGGTGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTCTTGGC-TATTGGAAAAACTTCC
* * * * * * * * * * * *
20292881 GAACTTGTCAATCTTTAACGAGATCTATTGTAATTTTTGTTCCATAAAGTATTC-A-AGAT-GA-
451 GAACTTTTCAAACTTTTACAAGTTCTTTTATAA-CTTGGTTCCTTACAGTATTCAAGAGATCCAT
** *
20292942 ----T--A-C-A---TTC--A-A----A-GCTGGGGAAATCACATCATTTGGTCTAAATAGTTTG
515 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * * *
20292988 TCATTTTG-AAA-AATGGTTTTGTTGT-TTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTC
580 TCATTTTGTAAACAA--CTTCTG--GTCTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC
20293050 T
641 T
* * * * *
20293051 CTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTCTTTCATAACTTC-GATTC
1 -TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTC
* * * * * * *
20293115 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTAAACATTCTATTCTCCAGAAATA
64 CATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATC
* * *
20293180 GCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTG-ATTCAAAAACTT
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAATACTT
* * * * * *
20293244 ATTTACGTGAGAATTAATTCTC--TTGGTTCTTGGACGAACTTCCGAACTTGTTAAACTGTTACG
193 ATTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACG
* * * ** *
20293307 AGTTCTTTTAT-ATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTG
258 AGTTCTTTTATAAT-TTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCG
* *
20293371 AACATTCCAAT-TTC-GGAAAACTGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGT
322 AACATTCC-ATGCTCGGGAAATC-GCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGT
* * * * * * *
20293434 TTTGGTCTTTAAAACAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACT
385 TTTGGTGTTTAAAATAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGCTATTGGAAAAACT
* * * *
20293499 TCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGAT
448 TCCGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GAT
** ** * *
20293564 CCATTCCTTTAAGCAATTTTT-GAACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAG
511 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAG
* * * * * * **
20293628 TTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAA-TTATTTACA-TGAGAATTGTTT
576 TTTGTCATTTTGTAAACAACTTCTGGTCT-T-GAATTAAAAACTTATTTA-AGTGAGAATTGTTT
*
20293691 CTCG
638 CTCT
* * * * * * *
20293695 TT-GCTGTTGGACGAAC-TTCCACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTT-GGATCC
1 TTGGTTCTTGGACGAACTTTCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCC
* * * * * * * *
20293757 TTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTT-TCGAACATTCCATGCTCGGAAAATC
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-AAACATTCTATGCTCGAAAAATC
* * *
20293821 GCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTA
* * * * *
20293886 TTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGA
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
* * * *
20293951 GATCTATTGTAATTTCTATTCCATAAAGTATTC-A-A-GAT-GA-----T--A-C-A--TTC--A
259 GTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGAA
* * * * *
20293999 -A----A-GCTGGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT
324 CATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACA-AGTTTT
* * * * * * * ** *
20294057 GTTGTTTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTC
388 GGTGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTCT-TGGC-TATTGGAAAAACTTCC
* ** * * * * *
20294122 GATCTAGTCAAACTTTAACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCA
451 GAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GATCCA
* * * * * ** * *
20294187 TCCCTTCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATAGCAGCATTTGGTCTAAATAGTTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * **
20294252 GTCATTTTGGAAACAAGTTTTGGTCTTTG-ATTCAAAAACTTATTTACGTGAGAATTAATTCTC-
579 GTCATTTTGTAAACAACTTCTGGTC-TTGAATT-AAAAACTTATTTAAGTGAGAATTGTTTCTCT
* * * * *
20294315 TTGGTTCTTGGACGAACTCTCGAACTAGTTAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCA
* * * * *
20294380 TACAGTATTCAAGACAATACATTCCTTCTG-GGAACTTTCTAAACATTCTATGCTCGAAAAATCG
66 TAAAGTATTCAAGACGATCCATTCCTTC-GAGCAATTTTCTAAACATTCTATGCTCGAAAAATCG
* * *
20294444 CATCATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTAAATTTAAA-ACTTA
130 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-TTAAATACTTA
* * * *
20294507 TTT-CGTGAGAATTTTTTCTCCCTCTTGGTTCTTGGA-AGAACTTCCAAACTTTTCAAACTTTTA
194 TTTACGTGAGAATTATTTCT--CTTTTGCTTCTTGGACA-AACTTCCAAACTTGTCAAACTTTTA
* ** * * * * *
20294570 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTT
256 CGAGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTC
**
20294635 GAACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTT
321 GAACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTT
* * * * * * **
20294700 TCGATCTCTAAAACGAAAAA-TTATTTACATGAGAATTGTTTCTCGTT-GCTGTTGGACGAACTT
386 TTGGTGTTTAAAA-TAAAAACTTATTTACATGAGAATTGTTTCTC-TTGGCTATTGGAAAAACTT
* * * * *
20294763 CC-ACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGATCCTTATAGCATTCAAGACGATC
449 CCGA-ACTTTTCAAACTTTTACAAGTTCTTTTATAACTTGGTTCCTTACAGTATTCAAGA-GATC
* * * * * *
20294827 CATTCCATCAAGCAATTTTTCGACCATTCCATGCTCGGGAAATCGCATCATTTGGTATATATAGT
512 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGT
* * * *
20294892 TTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTC
577 TTGTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC
20294957 T
641 T
* ** * * * * * * **
20294958 TCTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATCTATTGTAATTTTTGTTCC
1 T-TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCC
* * ** *
20295023 ATAAAGTATTC-A-A-GAT-GA-----T--A-C-A--TTC---A-A----A-GCTGGGGAAATCA
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATCG
** * * * *
20295064 CATCATTTGGTCTAAATAGTTTGTCATTTTGATAAA-TGGTTTTGTTGTTTGAACTAAAAACTTA
130 CATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTTTGAATTAAATACTTA
* * * * * * * * *
20295128 TTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGA
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
* * * * * * * *
20295193 GTTCTTTCATAACTTT-GATTCCTTAAAGTATTCAAGACGATCCATCCCTTCGAGCATTTTTTGA
259 GTTCTTTTATAA-TTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGA
* * ** * * * * *
20295257 ACATTCTATTCTCCAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTT
323 ACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
* * * * ** * * ** *
20295322 GGTCTTT-GATTCAAAAACTTATTTACGTGAGAATTAATTCTCTTGGTTCTTGGACGAACTCCCG
388 GGTGTTTAAAAT-AAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTATTGGAAAAACTTCCG
* * *
20295386 AACTAGTT-AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATACA
452 AACT-TTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GATCCA
* * * * * *
20295449 TTCCTTCTG-GGAA-CTTTCTAAACATTCTATGCTC-GAAAAATCGCATCATTT-TTCTAAATAG
514 TTCCTTC-GAGCAATTTTTC-GAACATTCCATGCTCTG-GAAATCGCATCATTTGGTCTAAATAG
* * * * * ** *
20295510 TTTCTCATTTTGTAAACAAGTTTTGGTCTTTAAATTTAAAACTTATTTTCGTGAGAATTTTTTCT
576 TTTGTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCT
20295575 CCCT
640 --CT
* * * * *
20295579 CTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
1 -TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCC
* * ** * * ** **
20295644 TTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTT-TGAACATTCCATTATCGGGAAATCG
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATCG
* * * * ** ** *
20295708 CATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAACGAAA-AATTA
130 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TTGAATTAAATACTTA
* * * * * * * *
20295772 TTTACATGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGA
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
* ** * * * * *
20295835 GTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGA
259 GTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAA-TTTTCGA
* * * * * * *
20295899 CCATTCCATGCTTGGAAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTT
323 ACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
* * * * * * * * ** *
20295964 CGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCC
388 GGTGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTCTT-GGC-TATTGGAAAAACTTCC
* * * * * * * * * * * *
20296029 GAACTTGTCAATCTTTAACGAGATCTATTGTAATTTTTGTTCCATAAAGTATTC-A-AGAT-GA-
451 GAACTTTTCAAACTTTTACAAGTTCTTTTATAA-CTTGGTTCCTTACAGTATTCAAGAGATCCAT
** *
20296090 ----T--A-C-A---TTC--A-A----A-GCTGGGGAAATCACATCATTTGGTCTAAATAGTTTG
515 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * * *
20296136 TCATTTTG-AAA-AATGGTTTTGTTGT-TTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTC
580 TCATTTTGTAAACAA--CTTCTG--GTCTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC
20296198 T
641 T
* * * * * *
20296199 CTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTCTTTCATGACTTC-GATTC
1 -TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTC
* * * * * * * * *
20296263 CTTAAAGTATTCAAGACGATCCATCCCTTCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATA
64 CATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATC
* * *
20296328 GCAGCATTTGGTCTAAATAGTTTGTCATTTTAG-AAACAAGTTTTGGTCTTCG-ATTCAAAAACT
129 GCATCATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTTTTGGTCTTTGAATT-AAATACT
* * * * * * *
20296391 TATTTACGTGAGAATTAATTCTC--TTGGTTCTTGGACGAACTCCCGAACTAGTTAAACTTTTAC
192 TATTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTAC
* ** * * * ** * *
20296454 GAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATAC-ATTCCTTCTGGGAACTTTC
257 GAGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGAT-CGATTCCTTCAAGCAATTTTC
* * ** * *
20296518 TAAACATTCTATGCTCGAAAAATCGCATCATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGT
321 -GAACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGT
* * * * * * * *
20296582 TTTGGTCTTTAAATTTAAAACTTATTT-CGTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAA
385 TTTGGTGTTTAAAATAAAAACTTATTTACATGAGAA-TTGTT-T--CTCTTGGCTATTGGAAAAA
* * *
20296646 CTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATG
446 CTTCCGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-G
** ** * *
20296711 ATCCATTCCTTTAAGCAATTTTT-GAACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAAT
509 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAAT
* * * * **
20296775 AGTTTTTCATTTTGTAAACAAGTT-TCGATCTCTAAAACGAAAAA-TTATTTACA-TGAGAATTG
574 AGTTTGTCATTTTGTAAACAACTTCT-GGTCT-T-GAATTAAAAACTTATTTA-AGTGAGAATTG
*
20296837 TTTCTCG
635 TTTCTCT
* * * * * * *
20296844 TT-GCTGTTGGACGAAC-TTCCACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTT-GGATCC
1 TTGGTTCTTGGACGAACTTTCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCC
* * * * * * * * **
20296906 TTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTT-TCGACCATTCCATGCTCGGGAAATC
65 ATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-AAACATTCTATGCTCGAAAAATC
* * * * *
20296970 GTATCATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTA
* * * * * * *
20297035 TTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGA
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
* * * *
20297100 GATCTATTGTAATTTCTATTCCATAAAGTATTC-A-A-GAT-GA-----T--A-C-A--TTC--A
259 GTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGAA
* * * * *
20297148 -A----A-GCTGGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT
324 CATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACA-AGTTTT
* * * * * * * ** *
20297206 GTTGTTTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTC
388 GGTGTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTCT-TGGC-TATTGGAAAAACTTCC
* ** * * * * *
20297271 GATCTAGTCAAACTTTAACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCA
451 GAACTTTTCAAACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGA-GATCCA
* * * * ** * *
20297336 TTCCTTCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATAGCAGCATTTGGTCTAAATAGTTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * **
20297401 GTCATTTTGGAAACAAGTTTTGGTCTTTG-ATTCAAAAACTTATTTACGTGAGAATTAATTCTC-
579 GTCATTTTGTAAACAACTTCTGGTC-TTGAATT-AAAAACTTATTTAAGTGAGAATTGTTTCTCT
* * *
20297464 TTGG-TCTTGGACGAACTTTCGAACTTGTTAAACTGTTACGAGTTCTTTTATAACTTCAGTTCCT
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCA
** * * *
20297528 TAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTT-TGAACATTCTAAT-TTCGGAAAA-CT
66 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCT-ATGCTCGAAAAATC-
* * * ** *
20297590 GCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTA
* * * * *
20297655 TTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCAAACTTTTCAAACTTTTACG
194 TTTACGTGAGAATTATTTCTCTTTTGCTTCTTGGACA-AACTTCCAAACTTGTCAAACTTTTACG
* * * * * * *
20297719 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGA
258 AGTTCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGA
** *
20297784 ACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTC
323 ACATTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
* * * * * **
20297849 GATCTCTAAAACGAAAAA-TTATTTACATGAGAATTGTTTCTCGTT-GCTGTTGGACGAACTTCC
388 GGTGTTTAAAA-TAAAAACTTATTTACATGAGAATTGTTTCTC-TTGGCTATTGGAAAAACTTCC
* * * * *
20297912 -ACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGATCCTTATAGCATTCAAGACGATCCA
451 GA-ACTTTTCAAACTTTTACAAGTTCTTTTATAACTTGGTTCCTTACAGTATTCAAGA-GATCCA
* * * *
20297976 TTCCATCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTATATAGTTT
514 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
20298041 GTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTT
579 GTCATTTTGTAAACAACTTCTGGTC-TTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC-T
* ** * * * * * * *
20298106 TTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATCTATTGTAATTTCTGTTCCA
1 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCA
* *
20298171 TAAAGTATTCAAGATGATACATTCC
66 TAAAGTATTCAAGACGATCCATTCC
20298196 AAGCTCGGGA
Statistics
Matches: 14667, Mismatches: 2712, Indels: 1886
0.76 0.14 0.10
Matches are distributed among these distances:
572 4 0.00
573 11 0.00
574 6 0.00
575 4 0.00
577 2 0.00
578 11 0.00
579 20 0.00
580 53 0.00
581 17 0.00
582 36 0.00
583 70 0.00
584 103 0.01
585 13 0.00
586 4 0.00
587 13 0.00
588 18 0.00
589 11 0.00
590 9 0.00
591 6 0.00
592 1 0.00
593 4 0.00
595 3 0.00
597 2 0.00
598 2 0.00
599 1 0.00
600 1 0.00
604 1 0.00
605 1 0.00
606 3 0.00
607 2 0.00
609 2 0.00
611 1 0.00
612 126 0.01
613 30 0.00
614 38 0.00
615 1 0.00
616 1 0.00
617 7 0.00
618 33 0.00
619 410 0.03
620 2588 0.18
621 3503 0.24
622 881 0.06
623 41 0.00
624 49 0.00
625 32 0.00
626 21 0.00
627 12 0.00
628 16 0.00
629 16 0.00
630 23 0.00
631 27 0.00
632 51 0.00
633 103 0.01
634 31 0.00
635 67 0.00
636 154 0.01
637 25 0.00
638 29 0.00
639 41 0.00
640 308 0.02
641 1306 0.09
642 1081 0.07
643 1083 0.07
644 1085 0.07
645 619 0.04
646 202 0.01
647 137 0.01
648 16 0.00
649 14 0.00
650 1 0.00
652 6 0.00
653 3 0.00
654 11 0.00
655 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (641 bp):
TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCA
TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATGCTCGAAAAATCGC
ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTATT
TACGTGAGAATTATTTCTCTTTTGCTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGAGT
TCTTTTATAATTTCAATTCCATAAAGTATTCAAGACGATCGATTCCTTCAAGCAATTTTCGAACA
TTCCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
GTTTAAAATAAAAACTTATTTACATGAGAATTGTTTCTCTTGGCTATTGGAAAAACTTCCGAACT
TTTCAAACTTTTACAAGTTCTTTTATAACTTGGTTCCTTACAGTATTCAAGAGATCCATTCCTTC
GAGCAATTTTTCGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
TGTAAACAACTTCTGGTCTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCT
Found at i:20281328 original size:19 final size:22
Alignment explanation
Indices: 20281284--20281330 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 22
20281274 ATCATTTTTC
20281284 TAAATTGTTTGTCATTTTGTAAT
1 TAAATTGTTTGTCA-TTTGTAAT
20281307 TAAATT-TTTGTC-TTTG-AAT
1 TAAATTGTTTGTCATTTGTAAT
20281326 TAAAT
1 TAAAT
20281331 ACTTATTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.33
20 4 0.17
22 6 0.25
23 6 0.25
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.55
Consensus pattern (22 bp):
TAAATTGTTTGTCATTTGTAAT
Found at i:20281772 original size:152 final size:155
Alignment explanation
Indices: 20281492--20281801 Score: 464
Period size: 152 Copynumber: 2.0 Consensus size: 155
20281482 AAATCGCATC
** * * *
20281492 ATTTCGTCGAAATAGTTTTTCATTTTGTAAAAAAGGTTTTGTTGTTTGAATTAAAAACTTATTTA
1 ATTTCGTCGAAATAGTTCGTCATTTTGGAAAAAAGGTTTTGGTCTTTGAATTAAAAACTTATTTA
* *
20281557 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTAGGAGTTC
66 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTC
*
20281622 TTTCATAACTTTGGTTCCTTAAAGT
131 TTTCATAACTTCGGTTCCTTAAAGT
* * *
20281647 ATTTCGTCTAAATAGTTCGTCATTTTGGAAACAA-GTTTTGGTCTTTGATTTAAAAACTTATTTA
1 ATTTCGTCGAAATAGTTCGTCATTTTGGAAAAAAGGTTTTGGTCTTTGAATTAAAAACTTATTTA
* *
20281711 CGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
66 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTC
* *
20281774 TTTTATAACTTCGGTTCCTTACAGT
131 TTTCATAACTTCGGTTCCTTAAAGT
20281799 ATT
1 ATT
20281802 CAAGACAATA
Statistics
Matches: 140, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
152 71 0.51
153 2 0.01
154 38 0.27
155 29 0.21
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.44
Consensus pattern (155 bp):
ATTTCGTCGAAATAGTTCGTCATTTTGGAAAAAAGGTTTTGGTCTTTGAATTAAAAACTTATTTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTC
TTTCATAACTTCGGTTCCTTAAAGT
Found at i:20282266 original size:213 final size:211
Alignment explanation
Indices: 20281647--20298195 Score: 11679
Period size: 213 Copynumber: 78.8 Consensus size: 211
20281637 TCCTTAAAGT
* * * * * ***
20281647 ATTTCGTCTAAATAGTTCGTCATTTTGGAAACAAGTTTTGGTCTTTGATTTAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* * * *
20281712 GTGAGAATTGTTTCTCT-TGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCTT
* * * * *** * *
20281776 TTATAACTTCGGTTCCTTACAGTATTCAAGACAATACATTCCTTTGGGCAACTTTCTAAACATTC
129 TTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACATTC
* * *** *
20281841 TATGCTCAAAAAATCACATC
192 CATTCTCGGGAAATCGCATC
* * ** * *
20281861 ATTT-TTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTTAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAA-ACAAAAATTATTTAC
** * * *
20281925 AAGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTATGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* * *
20281990 TTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20282055 CATTATCGGGAAATCGCATC
192 CATTCTCGGGAAATCGCATC
* * * *
20282075 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * * *
20282140 ATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * *
20282204 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGAACATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* *
20282269 ATGCTCGGAAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * ** *
20282288 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * * *
20282352 CGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * * ***
20282417 TATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-T
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** **
20282474 CACA-TCATTTGG---TCTAAAT-
191 C-CATTC-TCGGGAAATC-GCATC
* ** * ** * * * *
20282493 AGTTT-GTC---A-A-TTTGTAAAATGGT-----TTTGTTG-T-TTGAACTA-AAAACTTATTTA
1 A-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAA-AACAAAAATTATTTA
* * * ** *
20282544 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * *
20282609 TTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACAT
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACAT
* ** * *
20282674 TCTATTCTCCAGAAATAGCAGC
190 TCCATTCTCGGGAAATCGCATC
* * * * **
20282696 ATTTGGTGTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * *
20282761 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTCT
* * ** ** *
20282824 TTTATAACTTCAGTTCCTTAAAGTACTCAAGACGATCCATTTATTTTAGCAATTTTTAAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20282889 CAATT-TC-GGAAAACTGCATC
192 C-ATTCTCGGGAAATC-GCATC
* * * *
20282909 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* * *
20282974 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAAGTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* *
20283039 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTC
128 TTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20283104 CATTATCGGGAAATCGCATC
192 CATTCTCGGGAAATCGCATC
* * * *
20283124 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * *
20283189 GTGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20283253 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAACATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* *
20283318 ATGCTCGGAAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * ** *
20283337 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * * * *
20283401 CGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * * ***
20283466 TATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-T
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** **
20283523 CACA-TCATTTGG---TCTAAAT-
191 C-CATTC-TCGGGAAATC-GCATC
* ** * ** * * * *
20283542 AGTTT-GTC---A-A-TTTGTAAAATGGT-----TTTGTTG-T-TTGAACTA-AAAACTTATTTA
1 A-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAA-AACAAAAATTATTTA
* * * ** *
20283593 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * *
20283658 TTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTAAACAT
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACAT
* ** * *
20283723 TCTATTCTCCAGAAATAGCAGC
190 TCCATTCTCGGGAAATCGCATC
* * * * **
20283745 ATTTGGTGTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * *
20283810 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTCT
* * **
20283873 TTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20283938 CAATT-TC-GGAAAACTGCATC
192 C-ATTCTCGGGAAATC-GCATC
* * * *
20283958 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* * *
20284023 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAAGTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* *
20284088 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTC
128 TTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20284153 CATTATCGGGAAATCGCATC
192 CATTCTCGGGAAATCGCATC
* * * *
20284173 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * *
20284238 GTGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20284302 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAACATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* *
20284367 ATGCTCGGAAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * ** *
20284386 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * * * *
20284450 CGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * * ***
20284515 TATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-T
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** **
20284572 CACA-TCATTTGG---TCTAAAT-
191 C-CATTC-TCGGGAAATC-GCATC
* ** * ** * * * *
20284591 AGTTT-GTC---A-A-TTTGTAAAATGGT-----TTTGTTG-T-TTGAACTA-AAAACTTATTTA
1 A-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAA-AACAAAAATTATTTA
* * * ** *
20284642 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * *
20284707 TTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACAT
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACAT
* ** * *
20284772 TCTATTCTCCAGAAATAGCAGC
190 TCCATTCTCGGGAAATCGCATC
* * * * **
20284794 ATTTGGTGTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * *
20284859 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTCT
* * **
20284922 TTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20284987 CAATT-TC-GGAAAACTGCATC
192 C-ATTCTCGGGAAATC-GCATC
* * * *
20285007 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* * *
20285072 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAAGTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* *
20285137 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTC
128 TTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20285202 CATTATCGGGAAATCGCATC
192 CATTCTCGGGAAATCGCATC
* * * *
20285222 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * *
20285287 GTGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20285351 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAACATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* *
20285416 ATGCTCGGAAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * ** *
20285435 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * * * *
20285499 CGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * * ***
20285564 TATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATTCAA--AGTTGGGGAA-A-T
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * * **
20285621 CACA-TCATTTGGTCTAAATAGTTTGTC
191 C-CATTC--TCGG--GAAATCG--CATC
* * * * *
20285648 ATTT--TGTAAA-A---TG--GTTTTGT-----TG-TTTGAAC--T---A-AAAACTTATTTACG
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAATTATTTACG
* * * * ** *
20285693 TGAGTATTGTTTCTCTCTTGCTTCTTGGATGAACTTTCGATCTAGTCAAACTTTAACGAGTTCTT
66 TGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTCTT
* * * * * *
20285758 TCATAACTTTGATTCTTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAATATTC
129 TTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACATTC
* ** * *
20285823 TATTCTCCAGAAATAGCAGC
192 CATTCTCGGGAAATCGCATC
* * * **
20285843 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * *
20285908 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTCT
* * **
20285971 TTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20286036 CAATT-TC-GGAAAACTGCATC
192 C-ATTCTCGGGAAATC-GCATC
* * * *
20286056 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* *
20286121 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* *
20286186 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTC
128 TTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20286251 CATTATCGGGAAATCGCATC
192 CATTCTCGGGAAATCGCATC
* * * *
20286271 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* *
20286336 GTGAGAATT-TTT-TCTCGTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCT
65 GTGAGAATTGTTTCTCTC-TTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCT
* * * * *
20286399 TTTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAACATTC
128 TTTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTC
* * *
20286464 CATGCTCGGAAAATCGTATC
192 CATTCTCGGGAAATCGCATC
* * * ** *
20286484 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * * *
20286548 CGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * * ***
20286613 TATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-T
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** **
20286670 CACA-TCATTTGG---TCTAAAT-
191 C-CATTC-TCGGGAAATC-GCATC
* ** * ** * * * *
20286689 AGTTT-GTC---A-A-TTTGTAAAATGGT-----TTTGTTG-T-TTGAACTA-AAAACTTATTTA
1 A-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAA-AACAAAAATTATTTA
* * * ** *
20286740 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * *
20286805 TTTCATAACTTCGATTCTTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACAT
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACAT
* ** * *
20286870 TCTATTCTCCAGAAATAGCAGC
190 TCCATTCTCGGGAAATCGCATC
* * * * * **
20286892 ATTTGGTGTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * *
20286957 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTCT
* * ** **
20287020 TTTATAACTTCAGTTCCTTAAAGTACTCAAGACGATCCATTTATTTTAGCAATTTTTGAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20287085 CAATT-TC-GGAAAACTGCATC
192 C-ATTCTCGGGAAATC-GCATC
* * * *
20287105 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* * *
20287170 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAAGTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* *
20287235 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTC
128 TTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20287300 CATTATCGGGAAATCGCATC
192 CATTCTCGGGAAATCGCATC
* * * *
20287320 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * * *
20287385 ATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20287449 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAACATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* *
20287514 ATGCTCGGAAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * ** *
20287533 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * * * * *
20287597 CGTGAGAATTGTTTCCCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * * ***
20287662 TATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-T
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * * **
20287719 CACA-TCATTTGGTCTAAATAGTTTGTC
191 C-CATTC--TCGG--GAAATCG--CATC
* * * * *
20287746 ATTT--TGTAAA-A---TG--GTTTTGT-----TG-TTTGAAC--T---A-AAAACTTATTTACG
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAATTATTTACG
* * * ** *
20287791 TGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTCTT
66 TGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTCTT
* * * *
20287856 TCATAACTTCGATTCTTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACATTC
129 TTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACATTC
* ** * *
20287921 TATTCTCCAGAAATAGCAGC
192 CATTCTCGGGAAATCGCATC
* * * **
20287941 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * *
20288006 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTCT
* * ** **
20288069 TTTATAACTTCAGTTCCTTAAAGTACTCAAGACGATCCATTTATTTTAGCAATTTTTGAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20288134 CAATT-TC-GGAAAACTGCATC
192 C-ATTCTCGGGAAATC-GCATC
* * * *
20288154 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* *
20288219 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* * *
20288284 TTTATAACTTCGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTCC
128 TTTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTCC
*
20288349 ATTATCGGGAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * *
20288368 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * * *
20288433 ATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20288497 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGACCATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
*
20288562 ATGCTCGGGAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * * ** *
20288581 ATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * *
20288645 CGTGAGAATTGTTTCTCT-TCTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGAT
64 CGTGAGAATTGTTTCTCTCT-TGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTT
* * * * * * * * * ***
20288709 CTATTGTAATTTTTGTTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-
126 CTTTTATAA-CTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT
* * * **
20288766 TCACA-TCATTTGGTCTAAATAGTTTGTC
190 TC-CATTC--TCGG--GAAATCG--CATC
* * * * * * ** * * *
20288794 ATTT--T-GAAA-A--ATG--GTTTTGT-----TG-TTTGAAC-TAAAAAC-TTATTTACGTGA-
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAATTA-TTTAC
*** * * ** * * ** *
20288842 GT-ATTGTT-TCTCTCTTGCTT-CT-TGGACGA--ACTTTCGATCTAGTCAAACTTTAACGAGTT
65 GTGAGAATTGTTTCTC-T-CTTGCTCTTG--GACGAACTTCCAACTTTTCAAACTTTTACGAGTT
* * * *
20288901 CTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTGTTTTAAACA
126 CTTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAAT-TTTTGAACA
* ** * *
20288966 TTCTATTCTCCAGAAATAGCAGC
189 TTCCATTCTCGGGAAATCGCATC
* * * **
20288989 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * *
20289054 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTCT
* * **
20289117 TTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20289182 CAATT-TC-GGAAAACTGCATC
192 C-ATTCTCGGGAAATC-GCATC
* * * *
20289202 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* *
20289267 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* *
20289332 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTC
128 TTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20289397 CATTATCGGGAAATCGCATC
192 CATTCTCGGGAAATCGCATC
* * * *
20289417 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * * *
20289482 ATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * *
20289546 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGAACATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* * *
20289611 ATGCTTGGAAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * ** *
20289630 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * * * *
20289694 CGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * * ***
20289759 TATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-T
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * * **
20289816 CACA-TCATTTGGTCTAAATAGTTTGTC
191 C-CATTC--TCGG--GAAATCG--CATC
* * * * *
20289843 ATTT--TGTAAA-A---TG--GTTTTGT-----TG-TTTGAAC--T---A-AAAACTTATTTACG
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAATTATTTACG
* * * ** *
20289888 TGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTCTT
66 TGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTCTT
* * * *
20289953 TCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATCCCTTCGAGCATTTTTTTGAACATTC
129 TTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACATTC
* ** * *
20290018 TATTCTCCAGAAATAGCAGC
192 CATTCTCGGGAAATCGCATC
* * **
20290038 ATTTGGTCTAAATAGTTTGTCATTTTAG-AAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTA
** * * * *
20290102 CGTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTCCCGAACTAGTT-AAACTTTTACGAGTTC
64 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACT-TTTCAAACTTTTACGAGTTC
* * * * ** * * *
20290165 TTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATACATTCCTTCTGGGAACTTTCTAAACAT
127 TTTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACAT
* * **
20290230 TCTATGCTCGAAAAATCGCATC
190 TCCATTCTCGGGAAATCGCATC
* * * ** *
20290252 ATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTAAATTTAAAACTTATTT-C
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAA-ACAAAAATTATTTAC
* * *
20290315 GTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTT
65 GTGAGAATTGTTTCT--CTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTT
* *
20290380 CTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACAT
126 CTTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT
*
20290445 TCCATTATCGGGAAATCGCATC
190 TCCATTCTCGGGAAATCGCATC
* * * *
20290467 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * *
20290532 GTGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20290596 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAACATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* *
20290661 ATGCTCGGAAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * ** *
20290680 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * * * *
20290744 CGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * * ***
20290809 TATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-T
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * * **
20290866 CACA-TCATTTGGTCTAAATAGTTTGTC
191 C-CATTC--TCGG--GAAATCG--CATC
* * * * *
20290893 ATTT--TGTAAA-A---TG--GTTTTGT-----TG-TTTGAAC--T---A-AAAACTTATTTACG
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAATTATTTACG
* * * ** *
20290938 TGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTCTT
66 TGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20291003 TCATAACTTTGATTCTTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACATTC
129 TTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACATTC
* ** * *
20291068 TATTCTCCAGAAATAGCAGC
192 CATTCTCGGGAAATCGCATC
* * * **
20291088 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * *
20291153 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTCT
* * **
20291216 TTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20291281 CAATT-TC-GGAAAACTGCATC
192 C-ATTCTCGGGAAATC-GCATC
* * * *
20291301 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* *
20291366 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* *
20291431 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTC
128 TTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20291496 CATTATCGGGAAATCGCATC
192 CATTCTCGGGAAATCGCATC
* * * *
20291516 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * *
20291581 GTGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20291645 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAACATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* *
20291710 ATGCTCGGAAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * ** *
20291729 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * * *
20291793 CGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * * ***
20291858 TATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-T
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** **
20291915 CACA-TCATTTGG---TCTAAAT-
191 C-CATTC-TCGGGAAATC-GCATC
* ** * ** * * * *
20291934 AGTTT-GTC---A-A-TTTGTAAAATGGT-----TTTGTTG-T-TTGAACTA-AAAACTTATTTA
1 A-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAA-AACAAAAATTATTTA
* * * ** *
20291985 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * *
20292050 TTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACAT
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACAT
* ** * *
20292115 TCTATTCTCCAGAAATAGCAGC
190 TCCATTCTCGGGAAATCGCATC
* * * **
20292137 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * *
20292202 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTCT
* * **
20292265 TTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20292330 CAATT-TC-GGAAAACTGCATC
192 C-ATTCTCGGGAAATC-GCATC
* * * *
20292350 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* *
20292415 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* *
20292480 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTC
128 TTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20292545 CATTATCGGGAAATCGCATC
192 CATTCTCGGGAAATCGCATC
* * * *
20292565 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * *
20292630 GTGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20292694 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGACCATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* *
20292759 ATGCTCGGAAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * * ** *
20292778 ATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * *
20292842 CGTGAGAATTGTTTCTCT-TTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * * * ***
20292906 TATTGTAATTTTTGTTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-T
127 TTTTATAA-CTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * * **
20292963 CACA-TCATTTGGTCTAAATAGTTTGTC
191 C-CATTC--TCGG--GAAATCG--CATC
* * * * * * ** * * *
20292990 ATTT--T-GAAA-A--ATG--GTTTTGT-----TG-TTTGAAC-TAAAAAC-TTATTTACGTGA-
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAATTA-TTTAC
*** * * ** * * ** *
20293038 GT-ATTGTT-TCTCTCTTGCTT-CT-TGGACGA--ACTTTCGATCTAGTCAAACTTTAACGAGTT
65 GTGAGAATTGTTTCTC-T-CTTGCTCTTG--GACGAACTTCCAACTTTTCAAACTTTTACGAGTT
* * * *
20293097 CTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTAAACA
126 CTTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACA
* ** * *
20293162 TTCTATTCTCCAGAAATAGCAGC
189 TTCCATTCTCGGGAAATCGCATC
* * * **
20293185 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * *
20293250 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTCT
* * **
20293313 TTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20293378 CAATT-TC-GGAAAACTGCATC
192 C-ATTCTCGGGAAATC-GCATC
* * * *
20293398 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* *
20293463 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* *
20293528 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTC
128 TTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20293593 CATTATCGGGAAATCGCATC
192 CATTCTCGGGAAATCGCATC
* * * *
20293613 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * * *
20293678 ATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * *
20293742 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGAACATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* *
20293807 ATGCTCGGAAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * ** *
20293826 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * * * *
20293890 CGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * * ***
20293955 TATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-T
127 TTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * * **
20294012 CACA-TCATTTGGTCTAAATAGTTTGTC
191 C-CATTC--TCGG--GAAATCG--CATC
* * * * *
20294039 ATTT--TGTAAA-A---TG--GTTTTGT-----TG-TTTGAAC--T---A-AAAACTTATTTACG
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAATTATTTACG
* * * ** *
20294084 TGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTCTT
66 TGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTCTT
* * * *
20294149 TCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATCCCTTCGAGCATTTTTTTGAACATTC
129 TTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACATTC
* ** * *
20294214 TATTCTCCAGAAATAGCAGC
192 CATTCTCGGGAAATCGCATC
* * * **
20294234 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * * *
20294299 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTCTCGAACTAGTT-AAACTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACT-TCCAACT-TTTCAAACTTTTACGAGTTCT
* * * * ** * * *
20294362 TTTATAACTTCGGTTCCTTACAGTATTCAAGACAATACATTCCTTCTGGGAACTTTCTAAACATT
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACATT
* * **
20294427 CTATGCTCGAAAAATCGCATC
191 CCATTCTCGGGAAATCGCATC
* * * ** *
20294448 ATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTAAATTTAAAACTTATTT-C
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAA-ACAAAAATTATTTAC
* * *
20294511 GTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTT
65 GTGAGAATTGTTTCT--CTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTT
* * *
20294576 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACAT
126 CTTTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT
*
20294641 TCCATTATCGGGAAATCGCATC
190 TCCATTCTCGGGAAATCGCATC
* * * *
20294663 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * * *
20294728 ATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20294792 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGACCATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
*
20294857 ATGCTCGGGAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * * ** *
20294876 ATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * *
20294940 CGTGAGAATTGTTTCTCT-TCTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGAT
64 CGTGAGAATTGTTTCTCTCT-TGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTT
* * * * * * * * * ***
20295004 CTATTGTAATTTTTGTTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-
126 CTTTTATAA-CTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT
** **
20295061 TCACA-TCATTTGG---TCTAAAT-
190 TC-CATTC-TCGGGAAATC-GCATC
** * * * **
20295081 AGTTT-GTC---AT--TTTG--ATAAATG-------GTTTTGTTGTTTGAACTAAAAACTTATTT
1 A-TTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTT
* * * ** *
20295131 ACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTT
63 ACGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTT
* * * * *
20295196 CTTTCATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATCCCTTCGAGCATTTTTTGAACAT
126 CTTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT
* ** * *
20295261 TCTATTCTCCAGAAATAGCAGC
190 TCCATTCTCGGGAAATCGCATC
* * * **
20295283 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * * *
20295348 GTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTCCCGAACTAGTT-AAACTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACT-TTTCAAACTTTTACGAGTTCT
* * ** * * *
20295411 TTTATAACTTCGGTTCCTT-AAGTATTCAAGACGATACATTCCTTCTGGGAACTTTCTAAACATT
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACATT
* * **
20295475 CTATGCTCGAAAAATCGCATC
191 CCATTCTCGGGAAATCGCATC
* * * ** * *
20295496 ATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTAAATTTAAAACTTATTTTC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAA-ACAAAAATTATTTAC
* * *
20295560 GTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTT
65 GTGAGAATTGTTTCT--CTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTT
* * *
20295625 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACAT
126 CTTTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT
*
20295690 TCCATTATCGGGAAATCGCATC
190 TCCATTCTCGGGAAATCGCATC
* * * *
20295712 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * * *
20295777 ATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20295841 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGACCATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* * *
20295906 ATGCTTGGAAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * ** *
20295925 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * *
20295989 CGTGAGAATTGTTTCTCT-TCTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGAT
64 CGTGAGAATTGTTTCTCTCT-TGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTT
* * * * * * * * * ***
20296053 CTATTGTAATTTTTGTTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-
126 CTTTTATAA-CTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT
* * * **
20296110 TCACA-TCATTTGGTCTAAATAGTTTGTC
190 TC-CATTC--TCGG--GAAATCG--CATC
* * * * * * ** * * *
20296138 ATTT--T-GAAA-A--ATG--GTTTTGT-----TG-TTTGAAC-TAAAAAC-TTATTTACGTGA-
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAATTA-TTTAC
*** * * ** * * ** *
20296186 GT-ATTGTT-TCTCTCTTGCTT-CT-TGGACGA--ACTTTCGATCTAGTCAAACTTTAACGAGTT
65 GTGAGAATTGTTTCTC-T-CTTGCTCTTG--GACGAACTTCCAACTTTTCAAACTTTTACGAGTT
* * * * *
20296245 CTTTCATGACTTCGATTCCTTAAAGTATTCAAGACGATCCATCCCTTCGAGCATTTTTTTGAACA
126 CTTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACA
* ** * *
20296310 TTCTATTCTCCAGAAATAGCAGC
189 TTCCATTCTCGGGAAATCGCATC
* ** **
20296333 ATTTGGTCTAAATAGTTTGTCATTTTAG-AAACAAGTTTTGGTCTTCGATTCAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTA
** * * * *
20296397 CGTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTCCCGAACTAGTT-AAACTTTTACGAGTTC
64 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACT-TTTCAAACTTTTACGAGTTC
* * * * ** * * *
20296460 TTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATACATTCCTTCTGGGAACTTTCTAAACAT
127 TTTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACAT
* * **
20296525 TCTATGCTCGAAAAATCGCATC
190 TCCATTCTCGGGAAATCGCATC
* * * ** *
20296547 ATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTAAATTTAAAACTTATTT-C
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAA-ACAAAAATTATTTAC
* * *
20296610 GTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTT
65 GTGAGAATTGTTTCT--CTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTT
* * *
20296675 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACAT
126 CTTTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT
*
20296740 TCCATTATCGGGAAATCGCATC
190 TCCATTCTCGGGAAATCGCATC
* * * *
20296762 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * * *
20296827 ATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * * *
20296891 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGACCATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
* *
20296956 ATGCTCGGGAAATCGTATC
193 ATTCTCGGGAAATCGCATC
* * * * ** *
20296975 ATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * *
20297039 CGTGAGAATTGTTTCTCT-TCTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGAT
64 CGTGAGAATTGTTTCTCTCT-TGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTT
* * * * * * * * ***
20297103 CTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATT-C--AAAGC---TGGGGAA-A-
126 CTTTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT
* * * **
20297160 TCACA-TCATTTGGTCTAAATAGTTTGTC
190 TC-CATTC--TCGG--GAAATCG--CATC
* * * * *
20297188 ATTT--TGTAAA-A---TG--GTTTTGT-----TG-TTTGAAC--T---A-AAAACTTATTTACG
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAATTATTTACG
* * * ** *
20297233 TGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTCTT
66 TGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTCTT
* * *
20297298 TCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACATTC
129 TTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACATTC
* ** * *
20297363 TATTCTCCAGAAATAGCAGC
192 CATTCTCGGGAAATCGCATC
* * * **
20297383 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGATTCAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
** * * *
20297448 GTGAGAATT-AAT-TCTCTTGGTCTTGGACGAACTTTCGAACTTGTT-AAACTGTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAAC-TTCCAACTT-TTCAAACTTTTACGAGTTCT
* **
20297510 TTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACATTC
128 TTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
* *
20297575 TAATT-TC-GGAAAACTGCATC
192 -CATTCTCGGGAAATC-GCATC
* * * *
20297595 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTAAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAA-TTATTTAC
* *
20297660 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTCT
65 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* *
20297725 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATTC
128 TTTATAACTTCGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
*
20297790 CATTATCGGGAAATCGCATC
192 CATTCTCGGGAAATCGCATC
* * * *
20297810 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAACGAAAAATTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAAC-AAAAATTATTTAC
* * * *
20297875 ATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCTT
65 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCTT
* * * *
20297939 TTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGAACATTCC
129 TTATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTCC
*
20298004 ATGCTCGGGAAATCGCATC
193 ATTCTCGGGAAATCGCATC
* * * ** *
20298023 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCG-TCTTTGAATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTTTAAAACAAA-AATTATTTA
* * * * * *
20298087 CGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATC
64 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * *
20298152 TATTGTAATTTCTGTTCCATAAAGTATTCAAGATGATACATTCC
127 TTTTATAACTTC-GATCCTTAAAGTATTCAAGACGATCCATTCC
20298196 AAGCTCGGGA
Statistics
Matches: 12909, Mismatches: 2496, Indels: 1858
0.75 0.14 0.11
Matches are distributed among these distances:
191 15 0.00
192 1293 0.10
193 108 0.01
194 28 0.00
195 125 0.01
196 23 0.00
197 103 0.01
198 40 0.00
199 104 0.01
200 91 0.01
201 83 0.01
202 32 0.00
203 64 0.00
204 8 0.00
205 85 0.01
206 40 0.00
207 70 0.01
208 112 0.01
209 109 0.01
210 41 0.00
211 95 0.01
212 1014 0.08
213 3604 0.28
214 1479 0.11
215 2841 0.22
216 1170 0.09
217 132 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (211 bp):
ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTAAAACAAAAATTATTTACG
TGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCAACTTTTCAAACTTTTACGAGTTCTTTT
ATAACTTCGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTCCATT
CTCGGGAAATCGCATC
Found at i:20282449 original size:428 final size:427
Alignment explanation
Indices: 20281647--20314191 Score: 21988
Period size: 428 Copynumber: 76.3 Consensus size: 427
20281637 TCCTTAAAGT
* * * ** **
20281647 ATTTCGTCTAAATAGTTCGTCATTTTGGAAACAAGTTTTGGTCTTTGATTTAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * *
20281712 GTGAGAATTGTTTCTCT-TGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
66 GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCTT
* * * * *** * *
20281776 TTATAACTTCGGTTCCTTACAGTATTCAAGACAATACATTCCTTTGGGCAACTTTCTAAACATTC
130 TTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACATTC
* ** * *
20281841 TATGCTCAAAAAATCACATCATTT-TTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * ** * * *
20281905 TAAATTTAAAACTTATTAACAAGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTT
258 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACTT
* * * *
20281970 TTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTT
323 GTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTT
* *
20282035 TAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATC
388 CAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20282075 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAACGAAAAA-TTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TAAAACTAAAAACTTATTTA
* * * *
20282139 CATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCT
* * *
20282203 TTTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGAACATTC
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTC
* * *
20282268 CATGCTCGGAAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * *
20282333 TGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTT
258 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACTT
* * * * * * * * * *
20282398 GTCAATCTTTAACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATT
323 GTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTT
* *
20282459 C-A--AA-----G-----------CTGGGGAAATCACATC
388 CAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * **
20282480 ATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTTGTTGTTTGAACTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCTTAAAACTAAAAACTTATTTA
* * * ** *
20282544 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * *
20282609 TTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACAT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACAT
* * * * * * *
20282674 TCTATTCTC-CAGAAATAGCAGCATTTGGTGTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGT
191 TCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
** *
20282738 CTTTG-ATTCAAAAACTTATTTACGTGAGAATT-AAT-TCTCTTGGTTCTTGGACGAACTTCCGA
255 CTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
* * *
20282800 ACTTGTTAAACTGTTACGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTACTCAAGACGATCCAT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCAT
** ** * *
20282864 TTATTTTAGCAATTTTTAAACATTCCAATT-TC-GGAAAACTGCATC
383 TCCTTCAAGCAATTTTTGAACATTCC-ATTCTCGGGAAATC-GCATC
* * *
20282909 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAC-AAAAACTTATTAA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* * *
20282973 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAAGTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * *
20283038 TTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** * * * * *
20283103 CCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
** ** * *
20283168 CTAAAACGAAAAA-TTATTTACGTGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCC-ACA
257 -TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA-A
* * * * *
20283229 CTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * * *
20283293 CATCAAGCAATTTTTCAAACATTCCATGCTCGGAAAATCGCATC
385 CTTCAAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATC
* * * ** * *
20283337 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * * * * *
20283402 GTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATCT
66 GTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* * * ** * * *
20283467 ATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATTC-A--AA-----G-------
129 TTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
* * * * * *
20283513 C-TG---GGGAAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTTGTTGT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCT
* * * *
20283573 TTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * *
20283638 AGTCAAACTTTAACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * ** * *
20283703 TCGAGCATTTTTTTAAACATTCTATTCTCCAGAAATAGCAGC
387 TCAAGCA-ATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * ** *
20283745 ATTTGGTGTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTT-TGATTCAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTTA
** * * *
20283809 CGTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTC
* * * **
20283872 TTTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACATT
128 TTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * *
20283937 CCAAT-TTCGGAAAA-CTGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
192 CC-ATGCTCGGAAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* ** * * * *
20284000 CTTTAAAACAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAA
255 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAA
* * *
20284065 CTTTTCAAAGTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* *
20284130 CTTTAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATC
385 CTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20284173 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAA-TTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TAAAACTAAAAACTTATTTA
* * *
20284237 CGTGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCT
* * * *
20284301 TTTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAACATTC
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTC
* * *
20284366 CATGCTCGGAAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
20284431 TGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTT
258 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACTT
* * * * * * * * * *
20284496 GTCAATCTTTAACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATT
323 GTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTT
* *
20284557 C-A--AA-----G-----------CTGGGGAAATCACATC
388 CAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * **
20284578 ATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTTGTTGTTTGAACTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCTTAAAACTAAAAACTTATTTA
* * * ** *
20284642 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * *
20284707 TTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACAT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACAT
* * * * * * *
20284772 TCTATTCTC-CAGAAATAGCAGCATTTGGTGTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGT
191 TCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
** *
20284836 CTTTG-ATTCAAAAACTTATTTACGTGAGAATT-AAT-TCTCTTGGTTCTTGGACGAACTTCCGA
255 CTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
* * *
20284898 ACTTGTTAAACTGTTACGAGTTCTTTTATATCTTC-AGTTCCTTAAAGTATTCAAGACGATCCAT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCAT
** *
20284962 TCCTTTTAGCAATTTTTGAACATTCCAATT-TC-GGAAAACTGCATC
383 TCCTTCAAGCAATTTTTGAACATTCC-ATTCTCGGGAAATC-GCATC
* * *
20285007 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAC-AAAAACTTATTAA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* * *
20285071 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAAGTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * *
20285136 TTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** * * * * *
20285201 CCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
** ** * *
20285266 CTAAAACGAAAAA-TTATTTACGTGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCC-ACA
257 -TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA-A
* * * * *
20285327 CTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * * *
20285391 CATCAAGCAATTTTTCAAACATTCCATGCTCGGAAAATCGCATC
385 CTTCAAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATC
* * * ** * *
20285435 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * * * * *
20285500 GTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATCT
66 GTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* * * ** * * *
20285565 ATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATTC-A--AA-----G-----T-
129 TTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
* * * * *
20285612 --TG---GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTTGTTGT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCT
* * * * *
20285671 TTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGATGAACTTTCGATCT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * * * *
20285736 AGTCAAACTTTAACGAGTTCTTTCATAACTTTGATTCTTTAAAGTATTCAAGACGATCCATTCCT
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * ** * *
20285801 TCGAGCATTTTTTTGAATATTCTATTCTCCAGAAATAGCAGC
387 TCAAGCA-ATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* ** *
20285843 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTT-TGATTCAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTTA
** * * *
20285907 CGTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTC
* * * **
20285970 TTTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACATT
128 TTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * *
20286035 CCAAT-TTCGGAAAA-CTGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
192 CC-ATGCTCGGAAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* ** * * * *
20286098 CTTTAAAACAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAA
255 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAA
* *
20286163 CTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* *
20286228 CTTTAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATC
385 CTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20286271 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAA-TTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TAAAACTAAAAACTTATTTA
* *
20286335 CGTGAGAATT-TTT-TCTCGTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTC
65 CGTGAGAATTGTTTCTCTC-TTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTC
* * * *
20286398 TTTTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAACATT
128 TTTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATT
* * * *
20286463 CCATGCTCGGAAAATCGTATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * *
20286528 TTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * * * * * * * * *
20286593 TGTCAATCTTTAACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CAT
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* *
20286654 TC-A--AA-----G-----------CTGGGGAAATCACATC
387 TCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * **
20286676 ATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTTGTTGTTTGAACTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCTTAAAACTAAAAACTTATTTA
* * * ** *
20286740 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * * *
20286805 TTTCATAACTTCGATTCTTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACAT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACAT
* * * * * * * *
20286870 TCTATTCTC-CAGAAATAGCAGCATTTGGTGTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGT
191 TCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
** *
20286934 CTTTG-ATTCAAAAACTTATTTACGTGAGAATT-AAT-TCTCTTGGTTCTTGGACGAACTTCCGA
255 CTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
* * *
20286996 ACTTGTTAAACTGTTACGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTACTCAAGACGATCCAT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCAT
** ** *
20287060 TTATTTTAGCAATTTTTGAACATTCCAATT-TC-GGAAAACTGCATC
383 TCCTTCAAGCAATTTTTGAACATTCC-ATTCTCGGGAAATC-GCATC
* * *
20287105 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAC-AAAAACTTATTAA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* * *
20287169 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAAGTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * *
20287234 TTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** * * * * *
20287299 CCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
** ** * * *
20287364 CTAAAACGAAAAA-TTATTTACATGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCC-ACA
257 -TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA-A
* * * * *
20287425 CTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * * *
20287489 CATCAAGCAATTTTTCAAACATTCCATGCTCGGAAAATCGCATC
385 CTTCAAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATC
* * * ** * *
20287533 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * * * * * *
20287598 GTGAGAATTGTTTCCCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATCT
66 GTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* * * ** * * *
20287663 ATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATTC-A--AA-----G-------
129 TTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
* * * * *
20287709 C-TG---GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTTGTTGT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCT
* * * *
20287769 TTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * * *
20287834 AGTCAAACTTTAACGAGTTCTTTCATAACTTCGATTCTTTAAAGTATTCAAGACGATCCATTCCT
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * ** * *
20287899 TCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATAGCAGC
387 TCAAGCA-ATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* ** *
20287941 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTT-TGATTCAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTTA
** * * *
20288005 CGTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTC
* * * ** **
20288068 TTTTATAACTTCAGTTCCTTAAAGTACTCAAGACGATCCATTTATTTTAGCAATTTTTGAACATT
128 TTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * *
20288133 CCAAT-TTCGGAAAA-CTGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
192 CC-ATGCTCGGAAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* ** * * * *
20288196 CTTTAAAACAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAA
255 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAA
* *
20288261 CTTTTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGATGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* *
20288325 CTTTAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATC
385 CTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20288368 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAACGAAAAA-TTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TAAAACTAAAAACTTATTTA
* * * *
20288432 CATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCT
* * * *
20288496 TTTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGACCATTC
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTC
* * * * *
20288561 CATGCTCGGGAAATCGCATCATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* *
20288626 TGAATTAAATACTTATTTACGTGAGAATTGTTTCTCT-TCTGCTTCTTGGACGAACTCCCGAACT
258 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGCTTCTTGGACGAACTTCCGAACT
* * * * * * * * * *
20288690 TGTCAATCTTTAACGAGATCTATTGTAATTTTTG-TTCCATAAAGTATTCAAGATGAT--A--CA
322 TGTCAAACTTTTACGAGTTCTTTTATAA-CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCC
* *
20288750 TTC-A--AA-----G-----------CTGGGGAAATCACATC
386 TTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * **
20288773 ATTTGGTCTAAATAGTTTGTCATTTTG-AAA-AATGGTTTTGTTGTTTGAACTAAAAACTTATTT
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA--GTTTTGGTCTTAAAACTAAAAACTTATTT
* * * ** *
20288836 ACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTT
64 ACGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTT
* * * * *
20288901 CTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTGTTTTAAACA
127 CTTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAAT-TTTTGAACA
* * * * * *
20288966 TTCTATTCTC-CAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGG
190 TTCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
** *
20289030 TCTTTG-ATTCAAAAACTTATTTACGTGAGAATT-AAT-TCTCTTGGTTCTTGGACGAACTTCCG
254 TCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCG
* * *
20289092 AACTTGTTAAACTGTTACGAGTTCTTTTATATCTTC-AGTTCCTTAAAGTATTCAAGACGATCCA
318 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCA
** *
20289156 TTCCTTTTAGCAATTTTTGAACATTCCAATT-TC-GGAAAACTGCATC
382 TTCCTTCAAGCAATTTTTGAACATTCC-ATTCTCGGGAAATC-GCATC
* * *
20289202 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAC-AAAAACTTATTAA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* *
20289266 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * *
20289331 TTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** * * * * *
20289396 CCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
** ** * * *
20289461 CTAAAACGAAAAA-TTATTTACATGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCC-ACA
257 -TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA-A
* * * * *
20289522 CTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * * *
20289586 CATCAAGCAATTTTTCGAACATTCCATGCTTGGAAAATCGCATC
385 CTTCAAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATC
* * * ** * *
20289630 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * * * * *
20289695 GTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATCT
66 GTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* * * ** * * *
20289760 ATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATTC-A--AA-----G-------
129 TTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
* * * * *
20289806 C-TG---GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTTGTTGT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCT
* * * *
20289866 TTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * * *
20289931 AGTCAAACTTTAACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATCCCT
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * ** * *
20289996 TCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATAGCAGC
387 TCAAGCA-ATTTTTGAACATTCCATTCTCGGGAAATCGCATC
** *
20290038 ATTTGGTCTAAATAGTTTGTCATTTTAG-AAACAAGTTTTGGTCTT-TGATTCAAAAACTTATTT
1 ATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTT
** * * * *
20290101 ACGTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTCCCGAACTAGTT-AAACTTTTACGAGTT
64 ACGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACT-TTTCAAACTTTTACGAGTT
* * * * ** * * *
20290164 CTTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATACATTCCTTCTGGGAACTTTCTAAACA
127 CTTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACA
* * * *
20290229 TTCTATGCTCGAAAAATCGCATCATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGGT
190 TTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * * * *
20290293 CTTTAAATTTAAAACTTATTT-CGTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAACTTCCA
255 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT--CTCTTGCTTCTTGGACGAACTTCCG
* *
20290357 AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCAT
318 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCAT
* *
20290422 TCCTTTAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATC
383 TCCTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20290467 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAA-TTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TAAAACTAAAAACTTATTTA
* * *
20290531 CGTGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCT
* * * *
20290595 TTTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAACATTC
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTC
* * *
20290660 CATGCTCGGAAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
20290725 TGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTT
258 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACTT
* * * * * * * * * *
20290790 GTCAATCTTTAACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATT
323 GTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTT
* *
20290851 C-A--AA-----G-----------CTGGGGAAATCACATC
388 CAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * **
20290872 ATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTTGTTGTTTGAACTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCTTAAAACTAAAAACTTATTTA
* * * ** *
20290936 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * * *
20291001 TTTCATAACTTTGATTCTTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACAT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACAT
* * * * * *
20291066 TCTATTCTC-CAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGT
191 TCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
** *
20291130 CTTTG-ATTCAAAAACTTATTTACGTGAGAATT-AAT-TCTCTTGGTTCTTGGACGAACTTCCGA
255 CTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
* * *
20291192 ACTTGTTAAACTGTTACGAGTTCTTTTATATCTTC-AGTTCCTTAAAGTATTCAAGACGATCCAT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCAT
** *
20291256 TCCTTTTAGCAATTTTTGAACATTCCAATT-TC-GGAAAACTGCATC
383 TCCTTCAAGCAATTTTTGAACATTCC-ATTCTCGGGAAATC-GCATC
* * *
20291301 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAC-AAAAACTTATTAA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* *
20291365 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * *
20291430 TTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** * * * * *
20291495 CCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
** ** * *
20291560 CTAAAACGAAAAA-TTATTTACGTGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCC-ACA
257 -TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA-A
* * * * *
20291621 CTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * * *
20291685 CATCAAGCAATTTTTCAAACATTCCATGCTCGGAAAATCGCATC
385 CTTCAAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATC
* * * ** * *
20291729 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * * * *
20291794 GTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATCT
66 GTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* * * ** * * *
20291859 ATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATTC-A--AA-----G-------
129 TTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
* * * * * *
20291905 C-TG---GGGAAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTTGTTGT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCT
* * * *
20291965 TTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * *
20292030 AGTCAAACTTTAACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * ** * *
20292095 TCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATAGCAGC
387 TCAAGCA-ATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* ** *
20292137 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTT-TGATTCAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTTA
** * * *
20292201 CGTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTGTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTC
* * * **
20292264 TTTTATATCTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACATT
128 TTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * *
20292329 CCAAT-TTCGGAAAA-CTGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
192 CC-ATGCTCGGAAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* ** * * * *
20292392 CTTTAAAACAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAA
255 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAA
* *
20292457 CTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* *
20292522 CTTTAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATC
385 CTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20292565 ATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCTCTAAAACGAAAAA-TTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TAAAACTAAAAACTTATTTA
* * *
20292629 CGTGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCT
* * * *
20292693 TTTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGACCATTC
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTC
* * * *
20292758 CATGCTCGGAAAATCGCATCATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* *
20292823 TGAATTAAATACTTATTTACGTGAGAATTGTTTCTCT-TTGCTTCTTGGACGAACTCCCGAACTT
258 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACTT
* * * * * * * * * *
20292887 GTCAATCTTTAACGAGATCTATTGTAATTTTTG-TTCCATAAAGTATTCAAGATGAT--A--CAT
323 GTCAAACTTTTACGAGTTCTTTTATAA-CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* *
20292947 TC-A--AA-----G-----------CTGGGGAAATCACATC
387 TCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * **
20292969 ATTTGGTCTAAATAGTTTGTCATTTTG-AAA-AATGGTTTTGTTGTTTGAACTAAAAACTTATTT
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA--GTTTTGGTCTTAAAACTAAAAACTTATTT
* * * ** *
20293032 ACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTT
64 ACGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTT
* * * * *
20293097 CTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTAAACA
127 CTTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACA
* * * * * *
20293162 TTCTATTCTC-CAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGG
190 TTCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
** *
20293226 TCTTTG-ATTCAAAAACTTATTTACGTGAGAATT-AAT-TCTCTTGGTTCTTGGACGAACTTCCG
254 TCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCG
* * *
20293288 AACTTGTTAAACTGTTACGAGTTCTTTTATATCTTC-AGTTCCTTAAAGTATTCAAGACGATCCA
318 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCA
** *
20293352 TTCCTTTTAGCAATTTTTGAACATTCCAATT-TC-GGAAAACTGCATC
382 TTCCTTCAAGCAATTTTTGAACATTCC-ATTCTCGGGAAATC-GCATC
* * *
20293398 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAC-AAAAACTTATTAA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* *
20293462 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * *
20293527 TTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** * * * * *
20293592 CCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTCTAAACAAGTTTTGATCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
** ** * * *
20293657 CTAAAACGAAAAA-TTATTTACATGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCC-ACA
257 -TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA-A
* * * * *
20293718 CTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * *
20293782 CATCAAGCAATTTTTCGAACATTCCATGCTCGGAAAATCGCATC
385 CTTCAAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATC
* * * ** * *
20293826 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * * * * *
20293891 GTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATCT
66 GTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* * * ** * * *
20293956 ATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATTC-A--AA-----G-------
129 TTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
* * * * *
20294002 C-TG---GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTTGTTGT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCT
* * * *
20294062 TTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * * *
20294127 AGTCAAACTTTAACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATCCCT
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * ** * *
20294192 TCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATAGCAGC
387 TCAAGCA-ATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* ** *
20294234 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTT-TGATTCAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTTA
** * * * *
20294298 CGTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTCTCGAACTAGTT-AAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACT-TCCAACT-TTTCAAACTTTTACGAGTTC
* * * * ** * * *
20294361 TTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATACATTCCTTCTGGGAACTTTCTAAACAT
128 TTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACAT
* * * *
20294426 TCTATGCTCGAAAAATCGCATCATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTC
191 TCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * * * * *
20294490 TTTAAATTTAAAACTTATTT-CGTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAACTTCCAA
256 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT--CTCTTGCTTCTTGGACGAACTTCCGA
* * *
20294554 ACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
* *
20294619 CCTTTAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATC
384 CCTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20294663 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAACGAAAAA-TTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TAAAACTAAAAACTTATTTA
* * * *
20294727 CATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCT
* * * *
20294791 TTTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGACCATTC
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTC
* * * * *
20294856 CATGCTCGGGAAATCGCATCATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* *
20294921 TGAATTAAATACTTATTTACGTGAGAATTGTTTCTCT-TCTGCTTCTTGGACGAACTCCCGAACT
258 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGCTTCTTGGACGAACTTCCGAACT
* * * * * * * * * *
20294985 TGTCAATCTTTAACGAGATCTATTGTAATTTTTG-TTCCATAAAGTATTCAAGATGAT--A--CA
322 TGTCAAACTTTTACGAGTTCTTTTATAA-CTTCGATTCCTTAAAGTATTCAAGACGATCCATTCC
* *
20295045 TTC-A--AA-----G-----------CTGGGGAAATCACATC
386 TTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
** * * **
20295068 ATTTGGTCTAAATAGTTTGTCATTTTGATAAA-TGGTTTTGTTGTTTGAACTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTA
* * * ** *
20295132 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * * *
20295197 TTTCATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATCCCTTCGAGCATTTTTTGAACATT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * * * * *
20295262 CTATTCTC-CAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTC
192 CCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
** * *
20295326 TTTG-ATTCAAAAACTTATTTACGTGAGAATT-AAT-TCTCTTGGTTCTTGGACGAACTCCCGAA
256 TTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAA
* * * *
20295388 CTAGTTAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAGTATTCAAGACGATACATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
** * * * * * **
20295452 CTTCTGGGAACTTTCTAAACATTCTATGCTCGAAAAATCGCATC
385 CTTCAAGCAA-TTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * * *
20295496 ATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTAAATTTAAAACTTATTTTC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * *
20295560 GTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTT
66 GTGAGAATTGTTTCT--CTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTT
* * *
20295625 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACAT
127 CTTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT
** * * * * *
20295690 TCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATC
191 TCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
** ** * * *
20295755 TCTAAAACGAAAAA-TTATTTACATGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCC-AC
256 T-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA-
* * * * *
20295816 ACTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
* * * * *
20295880 CCATCAAGCAATTTTTCGACCATTCCATGCTTGGAAAATCGCATC
384 CCTTCAAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATC
* * * ** * *
20295925 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * * *
20295990 GTGAGAATTGTTTCTCT-TCTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATC
66 GTGAGAATTGTTTCTCTCT-TGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * * * * *
20296054 TATTGTAATTTTTGTTCCATAAAGTATTCAAGATGAT--A--CATTC-A--AA-----G------
128 TTTTATAA-CTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * *
20296101 -C-TG---GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG-AAA-AATGGTTTTGTT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA--GTTTTGGT
* * * * *
20296159 GTTTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGAT
255 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAA
* * * * *
20296224 CTAGTCAAACTTTAACGAGTTCTTTCATGACTTCGATTCCTTAAAGTATTCAAGACGATCCATCC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * * ** * *
20296289 CTTCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATAGCAGC
385 CTTCAAGCA-ATTTTTGAACATTCCATTCTCGGGAAATCGCATC
** *
20296333 ATTTGGTCTAAATAGTTTGTCATTTTAG-AAACAAGTTTTGGTCTT-CGATTCAAAAACTTATTT
1 ATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTT
** * * * *
20296396 ACGTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTCCCGAACTAGTT-AAACTTTTACGAGTT
64 ACGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACT-TTTCAAACTTTTACGAGTT
* * * * ** * * *
20296459 CTTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATACATTCCTTCTGGGAACTTTCTAAACA
127 CTTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACA
* * * *
20296524 TTCTATGCTCGAAAAATCGCATCATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGGT
190 TTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * * * *
20296588 CTTTAAATTTAAAACTTATTT-CGTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAACTTCCA
255 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT--CTCTTGCTTCTTGGACGAACTTCCG
* * *
20296652 AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAT
318 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCAT
* *
20296717 TCCTTTAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATC
383 TCCTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20296762 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAACGAAAAA-TTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TAAAACTAAAAACTTATTTA
* * * *
20296826 CATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCT
* * * *
20296890 TTTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCGACCATTC
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTC
* * * * * *
20296955 CATGCTCGGGAAATCGTATCATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* *
20297020 TGAATTAAATACTTATTTACGTGAGAATTGTTTCTCT-TCTGCTTCTTGGACGAACTCCCGAACT
258 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGCTTCTTGGACGAACTTCCGAACT
* * * * * * * * * *
20297084 TGTCAATCTTTAACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CAT
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* *
20297145 TC-A--AA-----G-----------CTGGGGAAATCACATC
387 TCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * **
20297167 ATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTTGTTGTTTGAACTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCTTAAAACTAAAAACTTATTTA
* * * ** *
20297231 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * *
20297296 TTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACAT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACAT
* * * * * *
20297361 TCTATTCTC-CAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGT
191 TCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
** * *
20297425 CTTTG-ATTCAAAAACTTATTTACGTGAGAATT-AAT-TCTCTTG-GTCTTGGACGAACTTTCGA
255 CTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
* *
20297486 ACTTGTTAAACTGTTACGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTATTCAAGACGATCCAT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCAT
** * *
20297550 TCCTTTTAGCAATTTTTGAACATTCTAATT-TC-GGAAAACTGCATC
383 TCCTTCAAGCAATTTTTGAACATTC-CATTCTCGGGAAATC-GCATC
* * *
20297595 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAC-AAAAACTTATTAA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* *
20297659 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * *
20297724 TTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** * * * * *
20297789 CCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
** ** * * *
20297854 CTAAAACGAAAAA-TTATTTACATGAGAATTGTTTCTC-GTTGC-TGTTGGACGAACTTCC-ACA
257 -TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA-A
* * * * *
20297915 CTTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* *
20297979 CATCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
385 CTTCAAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATC
* * * ** * *
20298023 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * * * *
20298088 GTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGATCT
66 GTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* * * * * * * * ***
20298153 ATTGTAATTTCTGTTCCATAAAGTATTCAAGATGATACATT-C--CAAGC---TCGGGAA-A-TC
129 TTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
* * * ** * * * *
20298210 GCAT-CATTTGGTCTAAATAGTTTGTCATTTTGT-AAAATGGTTTTGT--TGTTTG--AACTAAA
193 -CATGC--TCGG--AAAATCG--CATCATTTGGTCTAAATAG-TTTGTCAT-TTTGTAAAC-AAG
*** * ** * ** * * * * ** *
20298269 AACT--TATTT-ACGTGAGTA-TTGTTT-C-T-----CTCTTGCT-TCTTGGACGAACTT--TCG
248 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-G-C-TTCTTGGACG
* * * * *
20298320 AACTAGT-CAAACTT-T-AACGAGTTCTTTC-A-TAAC--TT-T------GATTACTTAAAGTAT
310 AACT--TCCGAACTTGTCAA--ACTT-TTACGAGT-TCTTTTATAACTTCGATTCCTTAAAGTAT
* * * ** * *
20298371 TCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACATTCTATTCTCCAGAAATAGCAGC
369 TCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* ** *
20298431 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTT-TGATTCAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTTA
** * * *
20298495 CGTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTCCCGAACTTGTT-AAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTT-TTCAAACTTTTACGAGTTC
* * * * ** * * *
20298558 TTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATACATTCCTTCTGGGAACTTTCTAAACAT
128 TTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACAT
* * * *
20298623 TCTATGCTCGAAAAATCGCATCATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTC
191 TCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * * * * * *
20298687 TTTAAATTTAAAACTTATTTTCGTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAACTTCCAA
256 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT--CTCTTGCTTCTTGGACGAACTTCCGA
* * *
20298752 ACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
* *
20298817 CCTTTAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATC
384 CCTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20298861 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCTCTAAAAC-GAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TAAAACTAAAAACTTATTTA
* * * *
20298925 CATGAGAATTGTTTCTC-GTTGCTGTTGGACGAACTTCCACACTTTTCAAACTTTTTCGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCT
* * * *
20298989 TTTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAACATTC
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATTC
* * *
20299054 CATGCTCGGAAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
20299119 TGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTT
258 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACTT
* * * * * * * * * *
20299184 GTCAATCTTTAACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATT
323 GTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTT
* *
20299245 C-A--AA-----G-----------CTGGGGAAATCACATC
388 CAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * **
20299266 ATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTTGTTGTTTGAACTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCTTAAAACTAAAAACTTATTTA
* * * ** *
20299330 CGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * * *
20299395 TTTCATAACTTCGATTCTTTAAAGTATTCAAGACGATCCATTCCTTCGAGCATTTTTTTGAACAT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA-ATTTTTGAACAT
* * * * * *
20299460 TCTATTCTC-CAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGT
191 TCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
** *
20299524 CTTTG-ATTCAAAAACTTATTTACGTGAGAATT-AAT-TCTCTTGGTTCTTGGACGAACTTCCGA
255 CTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
* *
20299586 ACTTGTTAAACTGTTACGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTACTTCAAGACGATCCA
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTA-TTCAAGACGATCCA
** ** *
20299650 TTTATTTTAGCAATTTTTGAACATTCCAATT-TC-GGAAAACTGCATC
382 TTCCTTCAAGCAATTTTTGAACATTCC-ATTCTCGGGAAATC-GCATC
* * *
20299696 ATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAC-AAAAACTTATTAA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* * *
20299760 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAAGTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * *
20299825 TTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCAATTTTTGAACATT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
** * * * * *
20299890 CCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGATCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * *** * * * *
20299955 CTAAAACGAAAACTTATTTGCATGAGAATTGTTTCTCT-TTGC-TGTTGGGCGAACTT-CGACAC
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA-AC
* * * * *
20300017 TTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTCC
321 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCC
* * * *
20300081 ATCAAGCAATTTTTCGACCATTCCATGCTCGGGAAAACGCATC
386 TTCAAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATC
* * * ** * * *
20300124 ATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTTAATACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * * * * * *
20300189 GTGAGAATTTTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTTAACGAGATCT
66 GTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* * ** * * *
20300254 ATTATAATTTCTATTCCATAAAGTATTCAAGATGAT--A--CATTC-A--AA-----G-------
129 TTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTC
* * * * *
20300300 C-TG---GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTTGTTGT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCT
* * * *
20300360 TTGAACTAAAAACTTATTTACGTGAGCATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGAGCT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * * * *
20300425 AGTCAAACTTTAACGAGTTCTTTCATAACTTCTATTTCTTAAAGTATTCAAGACGATCCATTCCT
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * ** * *
20300490 TCGAGCATTTTTTTGAACATTCTATTCTCTAGAAATAGCAGC
387 TCAAGCA-ATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * ** *
20300532 ATTTTGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTT-TGATTCAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTTA
** * * * *
20300596 CGTGAGAATTAATTCTCT-TGGTTCTTGGACGAACTTCTGAACTTGTT-AAACTGTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTC-CAACTT-TTCAAACTTTTACGAGTTC
* * * **
20300659 TTTTATAACTTCAGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTTAGCAATTTTTGAACATT
128 TTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATT
* * * *
20300724 CCAAT-TTCGGAAAA-CTGCACCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
192 CC-ATGCTCGGAAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* ** * * * *
20300787 CTTTAAAACAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAA
255 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAA
* * * *
20300852 CTTTTCAAACTTTTACGAGTTCTTTTATAACTGCGGTTCCTTAAAGTATTCAAGATGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* *
20300917 CTTTAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATC
385 CTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * * *
20300960 ATTTAGTCTAAATTGTTTTTCATTTTGTAAACAAGTTTCGATCTTTAAAACGAAAAA-TTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* * * *
20301024 CATGAGAATTGTTTCTCT-TTGCTGTTGGACGAACTTCTACACTTTTCAAACTTTTTCGAGTT-T
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCA-ACTTTTCAAACTTTTACGAGTTCT
* * * * *
20301087 TGTTATAACTTGGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATTTTTCAAAAATT
129 T-TTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTT-GAACATT
* * * * * *
20301152 CCATGCTTGGGAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGCCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * *
20301217 TTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTGCCGAACT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * * * * * * * * *
20301282 TGTGAATCTTTAACGAGATCTATTGTAATTTCTG-TTCCATAAAGTATTCAAGATGAT--A--CA
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGATCCATTCC
20301342 TTC---CAA-----G-------C--TCT--GGAAATCGCATC
386 TTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * ** *
20301365 ATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTTGTTGTTTGAATTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTAAAACTAAAAACTTATTTA
** **
20301429 CGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTTTGAACTAGTCAAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * ** *
20301494 TTTCATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGTGCAATTTTTTTAACAT
128 TTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACAT
* * * * * * *
20301559 TCTATTCTCGGGAATTAGCAACATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTC
191 TCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * * * *
20301624 TTTGAGTCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCCTGGACGAACTTTCGAAC
256 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAAC
* * * * *
20301687 TTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTATAGTATTCAAGACGATGCATTCT
321 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCC
** * * * * **
20301752 TTTGAGCAACTTTCTAAACATTCTATGCTCGAAAAATCGCATC
386 TTCAAGCAA-TTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * *
20301795 ATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGG-CATTTAAATTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* * * * * * *
20301858 TGTGGGAATTATTTCTCTCTCTTGCTTCATGGACGAATTTCCAAAATTTTTAAACTTTTACGAGT
65 CGTGAGAATT-GTT-TCTCTCTTGC-TCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGT
* * * *
20301923 TCTTTTATAACTTCGGTTCCTTAAATTATTCAAGACGATCCATTCCTTTAAGCAACTTTTGAACA
126 TCTTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACA
* * * * *
20301988 TTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGAT
190 TTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * ** * * * * * *
20302053 CGTTAAAACAAAAACTTATTTACGTGCGAGTTGTTTCTC-CTAGC-TGTTGGACGATCTTCCAAA
255 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAA
* * * * * *
20302116 ATTTTCAAACTTTTTCGAGTTCTTTTATAACTTGGA-TCCTTATAGCATTCAAGACGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * *
20302180 CATCAAGCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATC
385 CTTCAAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATC
* * * * * *
20302224 ATTTGGTCTATATAGCTTGTCATTTTGTAAACAACTTTTGGTCTTAGAATTAAATACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * *
20302289 GTGAGAATTGTTTCTCTTTTGGTTCCTT-GACGAACTTCCAAACTTGTCAAACTTTTACTAGTTC
66 GTGAGAATTGTTTCTCTCTT-GCT-CTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTC
* * * * *
20302353 TTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACAT
128 TTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT-TGAACAT
* *** * * ** * * *
20302418 TCTATGCTTAAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAATTAACTTTTTGTA
191 TCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * * * *
20302482 TTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTTTTGGATGAACTTTCGAAC
256 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAAC
* * * * *
20302547 TTGTCAAACTTTTACGATTTCTTTTATAATTTC-AGTTCCATAAAGTATTCAAGACGATCTACTC
321 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTC
* ** * *
20302611 CTTCAATCAATTTTCCAAACAATCCATGCTCGGGAAATCGCATC
385 CTTCAAGCAATTTT-TGAACATTCCATTCTCGGGAAATCGCATC
** * * * * ** *
20302655 ATTTCATCTAAATAGTTTGTTATTTTGTAAAAAAGGTTTTGTTGTTTGAATTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTAAAACTAAAAACTTATTTA
* * ***
20302720 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGCCAAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * * * *
20302785 TTTCATAACTTTGG-TGCCTTAAAGTATTTAGTCTAA-ATAGTTTGTCATT--TTGGAAACAAGT
128 TTTTATAAC-TTGGAT-CCTTAAAGTA--T--TC-AAGA-CG-AT-CCATTCCTT-CAAGCAA-T
* * ** * * * * *
20302846 TTTCG-TC-TTTGAT--TC--AAAA--AC-TAATTTACGT-GAGAATTA-TTTCTC-TTGGTCCT
181 TTTTGAACATTCCATGCTCGGAAAATCGCATCATTT-GGTCTA-AA-TAGTTTGTCATT--T--T
** * ** ** ** * ** * * * **
20302899 -TGGACGAACTTCCGAACATCTCAAACTTTTACGAGTTCTTTTAC---A-ACTTGGGT-TC-CTT
239 GTAAAC-AAGTTTTGGTC-T-TTGAA--TTAAAAACTT-ATTTACGTGAGAATTGTTTCTCTCTT
* * * * * * ****
20302957 ACAGTATTCAAGACGATACATTCCTTCGAGCAACTT-TCTAAACTTTCTA--TGCTCGAAAAATA
298 GC-TTCTT--GGACGA-AC-TT-C--C--G-AACTTGTC-AAACTTT-TACGAGTTC-TTTTATA
* * ** * * * * * ** * *
20303019 GCCTC-ATTTTTCTAAATTGTTTGTCATTTTG-CAAACAACTTATTTACGTGAG-AATTATTT-C
349 ACTTCGATTCCT-TAAA--GTAT-TCA---AGACGATCCA-TTCCTT-C--AAGCAATT-TTTGA
* *** * *
20303080 TC-TCTTGGTTCT-TGGAAGA--GCTTCC
402 ACAT-TCCATTCTCGGGAA-ATCGCAT-C
**** ** * * * * * * *
20303105 A-AACCT-TTCA-AGCTTTTTCGAGTTCTTTTATAAC----TTCGATTCCTTAAATAATTCAATA
1 ATTTGGTCTAAATAG-TTTGTC-A-TT-TTGTA-AACAAGTTTTG-GT-CTT-AA-AACTAAAAA
* * * * ** * * * * *
20303163 C-GATCCATTCCTTTAAGCAATT-TTTGAAC-ATTCCAT-TCTCGA-GAA-ATCACATCATTTAG
57 CTTAT---TTAC-GTGAG-AATTGTTT-CTCTCTTGC-TCT-TGGACGAACTTC-CAAC-TTT--
* * * *
20303222 TGTAAA-TAATT-C---TTCATTTTGTAAACAAGTTTTGG-TCTTTAAAACGAAAACTTATTTAC
110 T-CAAACT-TTTACGAGTTC-TTTTAT-AAC-----TTGGATCCTT-AAA-G------TA-TT-C
** * ** * ** * ** **
20303281 GTGA-GAAT-TATTTCTCTTGGCTGTTGGACGAACTTCCGAACTATTCAAACTTTTAC-G-AGTT
156 AAGACG-ATCCA-TTC-CTT--C---AAG-C-AATTTTTGAAC-ATTC-CA-TGCT-CGGAAAAT
** * * * *** * * **
20303342 CTTTTATAACTTGGATTCT-TATAGTATTCAAGACGATCCATTCCATCAAGCAATTTTTCGAACA
207 C--GCATCATTTGG--TCTAAATAGT-TT------G-T-CATTTTGT-AAACAAGTTTT-GGTC-
* * ** * * * * * **
20303406 TTCG-ATGCTCGAGAAA-TTGCATCATTTGGTGTA-TATAGTTTGTC-ATT--TT-GTAAAC-AA
256 TTTGAAT--T--AAAAACTT--AT--TTACGTG-AGAATTGTTTCTCTCTTGCTTCTTGGACGAA
* * * **
20303463 CTTTTCG-TCTTTGAATTGAATACTTATTTACGTGAGAATTGTTTCTCTTT-TGCTTCTTGGACG
312 C-TTCCGAAC-TTG---TCAA-AC-T-TTTAC----G-A--G-TTCT-TTTAT--AACTT---CG
* ** * * * ** * * ** * **
20303526 AACTCCCGAACTTGTCAAACTTTAACGAGTTCTATTATAATTTCAGTTCCATAAAGTATTCAAGA
355 -ATTCCTTAA--AGT---A-TTCAA-GA---CGA-T-CCA-TTC-CTTCAAGCAA-TTTTTGA-A
** * * * * *
20303591 CGATACATTCCTTTGAGCAATTTGCCAAAT-
403 CATTCCATT-C-TCG-GGAAATCG-C--ATC
* * * ** * * **
20303621 ATTCCAAGCTCGTGAAATCG--CATCATTTGGTCTAAA-TAG-TTT-GTCATT-TTA-TAAAAAG
1 ATT---TGGTC-T-AAATAGTTTGTCATTT--TGTAAACAAGTTTTGGTC-TTAAAACTAAAAA-
* * * * * * * * * * * ** **
20303679 GTTTTGTTGTTTGACTTAAAAACATATTTACGTGAGAATTGTTTCTCTCTTG-C-TTCTTGGATG
57 -----CTTATTT-ACGTGAGAA-TTGTTT-C-T-----CTCTTGCTCT-TGGACGAACTT---CC
* ** ** * * * * *
20303742 AAC-TTTCGAACTAGT-C-A-AAC-TTT-T-AC-GGGTTCTTTCATAACTTCGGTTCCTTAA-A-
104 AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTGGATCCTT-A-AA-GT--ATT-C--AAGAC
* ** ** * * * * * * * * *
20303797 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCTATTCTCGGGAATTAGCAGCA
161 G-A-TCCATTCCTTCAAG---------CAATTTT-TGAACATTCCATGCTCGGAAAATCGCATCA
* *
20303862 TTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACG
214 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* *
20303927 TGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTT
279 TGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * * * * * *
20303990 TTATAACTTCGGTTCCTTACAGTATTCAAGATGATACATTCCTTCGAGCAAATTTCTAAACATTC
344 TTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC-AATTTTTGAACATTC
* * **
20304055 CATGCTTGAAAAATCGCATC
408 CATTCTCGGGAAATCGCATC
* * * * *
20304075 ATTT-TTCTAAATTA-TTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTT
1 ATTTGGTCTAAA-TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTA
* * * *
20304138 CGTGAGAATTTTCTCTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAACTTTTATGAGT
65 CGTGAGAATTGT-T-TCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGT
* * **
20304203 TCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTAGCAATTTTTGAACA
126 TCTTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACA
* * * *
20304268 TTCCAAT-TTCGGAAAA-CTGTATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTG
190 TTCC-ATGCTCGGAAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* ** * * * *
20304331 GTCTTTAAAACAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCA
253 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCG
* * *
20304396 AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAT
318 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCAT
* *
20304461 TCCTTTAAGCAATTTTTGAACATTCCATTATCGGGAAATCGCATC
383 TCCTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * * *
20304506 ATGTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCGGTCTTTAAAAC-GAAAGCTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
** * *
20304570 AATGAGAATTGTTTCTCT-TTGCTGTTGGACGAACTTCCAAACTTTTCAAACTTTTTCGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
*
20304634 TTTATAACTTGGATCCTTATAGTATTCAAGACGATCCATT-CTATCAAGCAATTTTTCGAACATT
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCT-TCAAGCAATTTTT-GAACATT
* * * * * * * *
20304698 CAATGCTCGGGAATTTGCATCATTTGGTGTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * * *
20304763 TTGAATTGAATACTTATTTATGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * * * * * *
20304828 TGTCAAACATTAACGAGTTCTATTATAATTTC-ATTTCCATAAAGTATTCAAGGCGATACATTCC
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCC
* * * **
20304892 TTCGAGCAATTAGTGGAACATTCCAAGCTCGGGAAATCGCATC
386 TTCAAGCAATT-TTTGAACATTCCATTCTCGGGAAATCGCATC
* * * ** * * ** *
20304935 ATTTGGTCTAAATAGTTTGTCATATTCT-TAGACAAACTTTCGAACTAGTCAAACTTTTACGAGT
1 ATTTGGTCTAAATAGTTTGTCAT-TT-TGTAAAC-AAGTTTTGGTCT--TAAAAC--TAAAAACT
* * * * *
20304999 TCTTT-CAT-A-ACTTCG-GTC-C-CTTAAAG-TATTCAGGACG-A--TCC-A-TTGCTTCGAGC
59 TATTTACGTGAGAATT-GTTTCTCTCTT---GCTCTT--GGACGAACTTCCAACTT--TTC-A--
* * * * * * * *
20305052 AATTTTTTGAAC-A-TTCTATTCT--C-GGGA--ATTAGCAGCATTTTGTCTAA-ATCGTTTGTC
113 AA-CTTTT--ACGAGTTCTTTTATAACTTGGATCCTTA--A--AGTAT-TC-AAGA-CG---ATC
* ** * * ** * * * * *
20305109 AATT--TGGAAACAAGTTTTGGTC-TT---TGAATC--AAAA--AC-TTATTTACGT-GAGAATT
165 CATTCCTTCAAGCAATTTTTGAACATTCCATG-CTCGGAAAATCGCATCATTT-GGTCTA-AA-T
* * * * ** * * ** * * ** * *
20305162 ATTTCTCTCGTTCTTG-GATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA--T-A-A
226 AGTT-TGTCATT-TTGTAAACAAGTTTTGGTCTT-T-GAA--TTAAAAACTT-ATTTACGTGAGA
* * *
20305222 CTTCGGTTC-CT-TATAG--TATTGAAGACGATACATTCCTTCCAGCAACTT-TCTAAACATTTT
284 ATT-GTTTCTCTCT-T-GCTTCTTG--GACG--A-A---CTTCC-G-AACTTGTC-AAAC-TTTT
* * **** ** * ** * * * * **
20305282 A--TGCTCGAAAAATCGCATC-ATTTTTCTAAATTGTTTGTCATTTTGTA-AAT-AACTTATTTC
334 ACGAGTTC-TTTTATAACTTCGATTCCT-TAAA--GTAT-TCA---AG-ACGATCCA-TTCCTTC
** *** * *
20305342 ATGAG-AATTGTTT-CTC-TCTTGGTTCT-TGGAAGA--GCTTCC
389 A--AGCAATT-TTTGAACAT-TCCATTCTCGGGAA-ATCGCAT-C
**** ** * * *
20305381 A-AACCT-TTCA-AGCTTTTTCGAGTTCTTTTATAAC----TTCGGTTCCTTAAAGTATTCATTA
1 ATTTGGTCTAAATAG-TTTGTC-A-TT-TTGTA-AACAAGTTTTGG-T-CTTAAA--A--C--TA
* ** * * * *** * * * * *
20305439 CGATCCATTCCTTTAAG-CA-AATT-TTGAAC-ATTCCAT-TCTCGA-GAA-ATCGCATCGTTTA
53 -AAAAC-TT-ATTTACGTGAGAATTGTTTCTCTCTTGC-TCT-TGGACGAACTTC-CAAC-TTT-
* * * * *
20305497 GTGTAAA-TAATT-C---TTCATTTTGTAAGCAAGTTTTGG-TCTTTAAA--A--CGAAAAC--T
110 -T-CAAACT-TTTACGAGTTC-TTTTATAA-C-----TTGGATCCTTAAAGTATTC-AAGACGAT
* * * * * * * * * *
20305550 -TATTTACGT-GAG-AATTGTTT--TC-TTGGC-TG-TTGGACGAACTTC-CGAAC-TAT--TC-
164 CCA-TTCCTTCAAGCAATT-TTTGAACATT-CCATGCTCGGA--AA-ATCGC-ATCATTTGGTCT
* * * * * * * *
20305602 AAACT--TTT-ACGAGTTCTTTTATAAC----TTGGGTCCTTACAGTATTCAAGACGATCCATTT
222 AAA-TAGTTTGTC-A-TT-TTGTA-AACAAGTTTTGGT-CTT--TGAATTAAAAAC--T-TATTT
* * *** * * * * * * * *
20305660 -CATCAAGCAATT-TTTCGAACATTCCATGCTAGG--GAAATTGC-ATCATTTGGTGTATATAGT
276 ACGT-GAG-AATTGTTTCTCTC-TTGC-TTCTTGGACGAACTTCCGA--ACTT-GT-CA-A-ACT
* * * * * * * * * *
20305720 TTGT-C-A-TT-TTGTAACGAACTT---TTCGTCTT--TGAATTGAATAC--T-TATTTACGT-G
331 TT-TACGAGTTCTT-TTA-TAACTTCGATTC--CTTAAAGTATTCAAGACGATCCA-TTCCTTCA
* ** * * * * *
20305772 AG-AATTGCTT-CTCTTTTGC-TTCTTGGATGAACTCCCGA--
390 AGCAATT-TTTGAAC-ATTCCATTCTCGG--GAAATCGC-ATC
* * ** * * * * * * * * * * * *
20305810 ACTT-GTC--AA-ACTTTAACGA-GTTCTATTATAA-TTTCAGTTCCCTGAAGTATTCAAGACGA
1 ATTTGGTCTAAATAGTTTGTC-ATTTTGTA-AACAAGTTT-TGGT--CTTAA-AACTAAAAAC-T
* * * * * ** * *
20305869 TACATTCCTTTGAGCAATT-TTCCAAACATTCCAAGCTCGT-GA--AA--TCGCATCATTTGGTC
59 TA-TTTAC-GTGAG-AATTGTTTC--TC--T-CTTGCTCTTGGACGAACTTC-CAAC-TTT--TC
* * * * * * *
20305928 TAAA-TAGTTTGTC-A-TT-TTGTAAAAAGGTTTTGTTGTTTGCCTTAAAAACATATTTACGTGA
112 -AAACT--TTT-ACGAGTTCTT-TTATAA---CTTG--G-AT-CCTT--AAA-GTA-TT-C--AA
* * * * ** * * * * * **** **
20305989 GAATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGAACTAGTCAAACTTCTACGGGTTCTTTCA
158 G-A-CG-ATC-C-ATTCCTTC-AAG-C-AATTTTTGAAC-ATTC-CA-TGCT-CGGAAAATCGCA
* * * * * *
20306054 TAACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCG--AGCAATTTTCTGAACATTC
211 TCA-TTTGG-T-C-TAAA-TAGTT-----TG-T-CATT--TT-GTAAACAAGTTT-TG----GTC
** * * * * * *
20306116 TATTCTCGGGAATTAGCAGC--ATTT-GGTCTA-AATAGTTTGTCATTTTGGAAACAAGTT-TTG
256 --TT-T---GAATTAAAAACTTATTTACGT-GAGAATTGTTTCTC-TCTT-G---C---TTCTTG
* **** * * * ** *
20306176 GTCTTTGAA-TGAAAAACTTATTTACGTGAGAATTGTTTCTCTTG-GTTCTTGGACGAACTTCTG
306 GAC---GAACTTCCGAAC----TT--GTCA-AACT-TTT-AC--GAGTTCTTTTA-TAACTTC-G
* * ** * *** ** * * * *
20306239 AACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT--A-C-AGTATTCAAGATGAT
355 -A-T--TC---C--TTA-AAG-TATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT--T
* * * *
20306300 ACATTCCTTCGAGCAACTTTCTAAACATTC
407 CCATT-C-TCG-GGAA--ATC---GCA-TC
*
20306330 TATGCTTGAAAAATCACATCATTTTTCTAAATTA-TTTGTCATTTTGTAAACAAGTTTTGGTCTT
1 -AT--TTG----------------GTCTAAA-TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * * *
20306394 TAAATTAAAAACTTATTTTCGTGAGAATTTTTTCTCTCTCTTGGTTCTTGGAAGAACTTCCAAAC
46 AAAACTAAAAACTTATTTACGTGAGAA-TTGTT-TCTCTCTT-GCTCTTGGACGAACTTCC-AAC
* *
20306459 TTTTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCC
107 TTTTCAAACTTTTACGAGTTCTTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCC
** * * * *
20306524 TTTTAGCAATTTTTGAACATTCCAAT-TTCGGAAAATTGCATCATTTAGTCTAAATAGTTTTTCA
171 TTCAAGCAATTTTTGAACATTCC-ATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* ** *
20306588 TTTTGTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTTACGTGAGAATTGTTTCTCT-TAGC
235 TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGC
* * * * * * * *
20306652 -TGTTAGACGAACTTGCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTGGA-TCATTACA
300 TTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAA
* * * * ** * *
20306715 GT-TTCCAAAATGATCCATTCCATCAAGAAATTTTCCATAC-TTCCATGCTCGGGAAATGGCATC
365 GTATT-CAAGACGATCCATTCCTTCAAGCAATTTTTGA-ACATTCCATTCTCGGGAAATCGCATC
*** * *
20306778 ATTTGGTCTAAATAGTTTGTCATTTTGTAAAC-AGCTTTTGGTCTTTGCATTAAATACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTAAAACTAAAAACTTATTTA
* * * * * * *
20306842 CGTGAGAATTGTTTCTCTTTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTATGAGTTG
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * * * * * *
20306907 TTTTCTAATTTCAGTTTCATAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTTTGAACAG
128 TTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACA-
* *
20306972 TT-CATGCTC--AAGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAA-ACGGTTTT
190 TTCCATGCTCGGAA-AA-TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTT
* * * * * *
20307033 GTTGTTTAAATTAAAAACTTATTTACGTGAGTATTGCTTCTCTCTTGCTTCTTGGAC-ATACTTT
252 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGA-ACTTC
* * * * * * * * *
20307097 TGAACTAGTTAAACTTTTATGGGTTCTTTCATAACTTCGGTTCCTTAAAGTTTTCATGACGATCC
316 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCC
* * * * * *
20307162 ATTCCTTCGAGCAAGTTTTTCAACATTCTATTCTCGAGAAATAGCAGC
381 ATTCCTTCAAGCAA-TTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * **
20307210 ATTTGGTCTAAATAGTTTGTCATTTTGGAAAAAAGTTTTGGTGTT-TGACTCAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTTA
* * * * * *
20307274 CGTGAGAATTGTTTCTCT-TGGTTCTTAGATGAACTTTCGAACTTCTCAAACTTTTACGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTCT
* * * * * * * *
20307338 TTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATTGCTTCGAGCAACTTTCTAAACTTT
129 TTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACATT
* ** ** *
20307403 CTATGCTCAAAAAATCGCAAAATTT-TTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * * * *
20307467 TTAAATT-AAAACTTATTTACGTGAAAATTGTTTCTCTCTCTTGGTTATTGGAAGAACTTCCAAA
257 TTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTCTTGCTTCTTGGACGAACTTCCGAA
* * *
20307531 CTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCATAAAGTATTCAAGACGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * *
20307596 CTTTAAGC-ATTTTTGAACATCCCATTATCGGGAAATCGCATC
385 CTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20307638 ATTTAGTCTAAATAGTTTTTCATTTTGTAAGCAAGTTTCGGTCTTTAAAAC-GAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* ** * *
20307702 CATGAGAATTGTTTCTCT-TTGCAGTTGGACGAACTTTCAAGCTTTTCAAACTTTTTCGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCAA-CTTTTCAAACTTTTACGAGTTCT
* * * *
20307766 TTTATAACTTGGATCCTTATAGTATTCAAGACGGTCCATTCCATCAAGCAATTTTTTCAACATTC
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACATTC
* * * *
20307831 CATGCTC-GAGAAATCACATCATTTGGTCTATATAGTTTGTCATTTTGTAAA-AAGGTTTTGTTG
193 CATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTC
* * * *
20307894 TTTGAACTAAAAACTTATTTACGTGAGTATT-TTTCTCTCTTGCTTCTTGGATGAACTTTCGAAC
256 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAAC
* * * * *
20307958 TAGTCAAACTTTAACGATTTCTTTCATAACTTCGATTCCTTACAGTATTCAAGACGATCCATTCC
321 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCC
** * ** ** *
20308023 TTTGAGCAATTTTCTGAACATTCTATTCTCCAGAAAAAGCAAC
386 TTCAAGCAATTTT-TGAACATTCCATTCTCGGGAAATCGCATC
* * * ** * *
20308066 ATTTGGTCTTAATAGTTTGTCATTTTGGAAACAAGTTTTGGTGTT-TGATTCAAAAACTTTTTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTTA
* * * * * *
20308130 CGTTAGAATTGTTTCTCT-TGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTCT
* * * * * *
20308194 TTTATAACTTCAGTTCCTTACAA-TATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACAT
129 TTTATAACTT-GGATCCTTA-AAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACAT
* ** * * *
20308258 TCTATGCTCAAAAAATCTCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTC
191 TCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * * * * * *
20308322 TTTAAATTAAAAACTTATTTAGGTGTGAATTGTTTCTCTCTTGGTTCTTGGAAGAGCTTCCAAAG
256 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAA-
* ** **
20308387 GTT-TCAAACTTTTTTGAGTTCTTTTATAACTTC-AGTTAGTTAAAGTATTCAAGACGATCCATT
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATT
* *
20308450 CCTTTAAGCAATTTTTGAACATTCCATTCTCGAGAAATCGCATC
384 CCTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20308494 ATTTAGTCTAAAAAGTTTTTCATTTTGTAAACAAATTTTGGTCTTTAAAAC-GAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* *
20308558 CGTGAGAATTGTTTCTCT-TGGCTGTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* *
20308622 TTTATAACTTGGATCCTTACAGTATTCAAGACGATCCATTCCATCAAG-AATTTTCTGAACATTC
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT-TGAACATTC
* * *
20308686 CATGCTCGGGAAATCGCATCATTTCGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * * *
20308751 TGAATTAAATACTTATTTACAT-AGGAATTGTTTCTCTTTTGGTTCTTGGATGAACTCCCGAACT
258 TGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * * *
20308815 TGTCAAACTTTT---AGTTCTTTTATTATTTC-AGTTTCATAAAGTATTCAAGACGATCCATTCC
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCC
*
20308876 TTCGAGCAATTTTTCGAACATTCC-TTGCTCGGGAAATCGCATC
386 TTCAAGCAATTTTT-GAACATTCCATT-CTCGGGAAATCGCATC
** * * ** *
20308919 ATTTATTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTCTGTTCTTTGAATTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTAAAACTAAAAACTTATTTA
* * ** * **
20308983 CGTGAGTATTGTATCTCTCTTGCTTCTTGGACGAACTTTTGAAATAGTCAAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTTGC-TCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * * *
20309048 TTTCATAACTTCGGTTCCTTAAAGTTTTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACAT
128 TTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT-TGAACAT
* * * ** * *
20309113 TCTATTCTC-CAGAAATAACAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGT
191 TCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* *
20309177 CTTTG-ATTCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACAAACTTCCGA
255 CTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
* * * * * *
20309239 ACTTGTGAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACAGTATTCAAGACAATACATT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
** * * * * **
20309304 CCTTCGGGCAACTTTCTAAACATTCTATGCTCGAAAAATCGCATC
384 CCTTCAAGCAA-TTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * *
20309349 ATTT-TTCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAA-TTAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * *
20309412 GTGAGAATTGTTTCTCTCTTGGTTCGTGGAAGAACTTCCAAACTTTTCAAACTTTTACGAGTTAT
66 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTTCT
* * * *
20309477 TTTATAACTTCGGTTCCTTAAAGTATTCGAGACGATCCATTCCTTTAAGCAATTTTTTTAACATT
129 TTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACATT
** * * * * **
20309542 CCATTATCGGGAAGTCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTCAGTCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* *** * * * *
20309607 TTAAAACGAAAACTTATTTACATGAGAATTGTTTCTCT-TTGC-TGTTGGATGAACTTCCAAACT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * * * * *
20309670 TTTCAAACTTTTACGAGCTCTTTTATAACTTGGA-TCCGTACAGTATTCAAGATGATCCATTCCT
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* ** * *
20309734 TCGAGCTGTTTTTTGAATATTCCATGCTCGGGAAATCGCATC
387 TCAAGC-AATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* ** * * *
20309776 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAATCTTATTTAT
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * * * * * *
20309840 GTGAGAATTATTTTTCTTTTGGTTCTTGGATGAGCTTTCAAACTTGTCAAACTTTTACGAGTTCT
66 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTCT
* * * * * * ** *
20309905 TTGATAATTTTAGTTCCATAAAGTTTTCAAGACGATCCATTCCTTTGAGCAATTTTCCGAACATT
129 TTTATAA-CTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT-TGAACATT
* * * *
20309970 CCATGCTCGGGAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAA-AAGATTTTGTTG
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-TTTTGGTC
* * *
20310034 TTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGCTTCTTGGATGAACTTTCGAAC
256 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAAC
* * * * *
20310099 TAGTCAAACTTTTACGAGTTCTTTTATAATTTCGATTCCTTACAGCATTCAAGACGATACATTCC
321 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCC
* * * ** * **
20310164 TTCGAGCAACTTTCTAAACATTATATGCTCGAAAAATCGCATC
386 TTCAAGCAA-TTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * *
20310207 ATTT-TTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * * * *
20310271 GTGAGAATTGTTTCTCTCTCTTGGTTCTTAGAAGAACTTCCAAACTTTTCAAACTATTACTAATT
66 GTGAGAATTG-TT-TCTCTCTT-GCTCTTGGACGAACTTCC-AACTTTTCAAACTTTTACGAGTT
* * * *
20310336 CTTTTATAACTTCGGTTCCTTAAAGTATTCAGGACGATCCATCCCTTTAAGCAATTTTTGAACAT
127 CTTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACAT
* * * * * * *
20310401 TCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTGTAACCAAGTTTCGGTC
191 TCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * * * * * *
20310466 TTTAAAATGAAAACTTATTTACGTGAGAATTGTTTATCT-TGGC-TGTTGGATGAACTTCCGAAC
256 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAAC
* * * * * *
20310529 TTTTGAAACTATTACGAGTTCTATTATAACTT-GGTTCCTTACAA-TATTCAAGATGATCCATTC
321 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTA-AAGTATTCAAGACGATCCATTC
* * * * *
20310592 CTTCGAGCTATTTTCTGAACATTCAATGCTCAGGAAATCGCATC
385 CTTCAAGCAATTTT-TGAACATTCCATTCTCGGGAAATCGCATC
* * * ** * *
20310636 ATTTGGTCTAAATAGTTTGTCATTTTGTAACCAACTTTTGTTCTTTGAATTAAATACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * * ** * *
20310701 GTGAGAATTGTTTCTCTGTTGGTTCTTGGACGAACTTTCGAACTAGTCAAAATTTTACGAGCTCT
66 GTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTCT
* * * * * *
20310766 TTCATGACTTCAGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTCTGAACATT
129 TTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT-TGAACATT
* ** * * * * *
20310831 CTATTTTCGGGAATTAGCAACATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * * * * * *
20310896 TTGGATCAGAAATTTATTTACATGAGAAATG--T-T-TCTTGGTTCTTGGACGAACTTCCAAACT
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACT
* * *
20310957 TGTCAAACTTTTACGAGTTC-TTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATTCCT
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * *** *
20311021 TCGAGCAACTTTCTAAACATTCCATGCTCAAAAAATTGCATC
387 TCAAGCAA-TTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * * * *
20311063 ATTT-TTCTAAATTGTTAGTCATTTTGTCAACAAGTTTTGGTATTTAAATTAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * *
20311127 ATGAGAAGTAT-TTCTCTCTCTTGGTTCTTGGACGAACTTCAAAACTTTTCAAACTTTTACGAGT
66 GTGAGAA-T-TGTT-TCTCTCTT-GCTCTTGGACGAACTTC-CAACTTTTCAAACTTTTACGAGT
* * ** *
20311191 TCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATATTTGAACA
126 TCTTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACA
* * * *
20311256 TTCCATTCTC-GAGAAATCGCATTATTTAGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTAG
190 TTCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * * * * *
20311319 TCTTTAAAATGAAAACTTATTTAAGTGAGAATTGTTTCTCT-TGGC-TGTTGGACGAACTTCTGA
254 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
* * * * *
20311382 ACTTTTCAAACTTTTACCAGTTCTTTTATAACTT-GGTTCCTTATAGTATTCAAGATGATCCATT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
* * * * * * *
20311446 CATTCTAGCTATTTTTCAAACATTCCGTGCTCGGTAAA-CAGCATC
384 CCTTCAAGCAATTTTT-GAACATTCCATTCTCGGGAAATC-GCATC
* * ** *
20311491 ATTTGGTCTAAATAGTTTGGT-ATTTTGTAAA-AAGGTTTTGTTATTTCAATTAAAAACTTATTT
1 ATTTGGTCTAAATAGTTT-GTCATTTTGTAAACAA-GTTTTGGTCTTAAAACTAAAAACTTATTT
* * * * ***
20311554 ACGTGAGAATTGTTTCTCTCTTAGTTCTTGAACAAACTTTCGAACAAGTCAAACTTTTACGAGTT
64 ACGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTT
* * * * * * *
20311619 CTTTCAT-ATTTCGGTTCCTTAAAGTATTCAAGTCGATCCATTCCTTCGAGTAATTTTCTAAACA
127 CTTTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT-TGAACA
* * * * * * *
20311683 TTCTATTCTCGGAAAATAGCAGCATTTGGTCTAAAAAGTTTGTAATTTTGGAAACAAGTTTTGGT
190 TTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * * * **
20311748 ATTTAAATAAAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTTTGA
255 CTTTGAAT-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
* * * * *
20311811 ACTAGTCTAACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
* * ** * * * * *
20311876 CCTTCGAGTAATTTTCTGAACATTCTTTTCTTGGGAATTAGTAGC
384 CCTTCAAGCAATTTT-TGAACATTCCATTCTCGGGAAATCGCATC
* ** * *
20311921 ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAA-TCAAGAACATATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACT-AAAAACTTATTTA
* * * * * * ** *
20311985 CGTGAGAATTATTTCTCT-TGGTTCTTTGACAAACTTTCGAACTAGTCAAACTTTTACAAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTCT
* * * * * *
20312049 TTTATAACTTCGGTTCC-TACAGTATTCAAGACGATACATTCCTTCGAGCAACTTTCTAAACATT
129 TTTATAACTT-GGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTTTTGAACATT
** ** * * ** *
20312113 TTATGCTCAAAAAATTGCATCATTT-TTCTAAATTTTTTGTGATTTTGTAAACAAGTTTTGGTCT
192 CCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * *
20312177 TTAAATTAAAAACTTCTTTACGTGAGAATTGTTTCTCACTCTTGGTTCTTGGACGAACTTCCAAA
257 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT--CTCTTGCTTCTTGGACGAACTTCCGAA
* * *
20312242 CTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
** *
20312307 CTTTGAGCAATTTTTGAACATTCCATTGTCGGGAAATCGCATC
385 CTTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * *
20312350 GTTTAGTCTAAATAGTTTTTCATTTTGTAACCAAGTTTTGGTCTTTAAAAC-GAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTAAAACTAAAAACTTATTTA
* * * *
20312414 CGTGAGAATTGTTTCTCT-TGGCTGTTGGACAAACTTCTGAACTTTTCAAACTTTTACGAGTTCT
65 CGTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTC-CAACTTTTCAAACTTTTACGAGTTCT
* ** * *
20312478 TTTATAACTTGGTTCCTTCCAGTATTTAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTC
129 TTTATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT-TGAACATTC
* * *
20312543 CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCACTTTGTAAACAACTTTTGGTCTT
193 CATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
20312608 TGAATTAAATACTTATTTATGTGAGAATTGTTTCTCTTTTAG-TTCTTGGACTAACTTCCGAACT
258 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGACGAACTTCCGAACT
**
20312672 TGTCAAACTTTTACGAGTTCTTTTATAA-TTTTAGTTCCTTAAAGTATTCAAGACGATCCATTCC
322 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCC
** *
20312736 TTTGAGCAA----T-----TT---TT-T----AAA---CATT
386 TTCAAGCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * * ** *
20312758 ATTTGGTCTAAATAGTTTTTTATTTTATAAA-AAGGTTTTGTTGTTTGAATTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTAAAACTAAAAACTTATTTA
* * * ** **
20312822 CGTGAGAATTATTTCTCTCTTGGTTCTTGGACCAACTTTTGAACTTGCCAAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * **
20312887 TTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGAACAT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT-TGAACAT
* * * * * * *
20312952 TCTATTCTCGGGAAATAGCAGT-ATTTGGTCTAAATAGATTGTCATTTTGGAAACAAGTTTTGAT
191 TCCATGCTCGGAAAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * *
20313016 CTTTGAATCAAAAACTTATTTACGTG-GTAATTTTTTCTCTTTTGGTTCTTGGACGAACTTCCGA
255 CTTTGAATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
* ** *
20313080 ACTTGTCAAAC-TTTACGAGTTCTTTTAGAA-TTTTAGTTCCATAAAGTATTCAAGACGATCCAT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCAT
** * *
20313143 TCCTTTGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCACATC
383 TCCTTCAAGCAA-TTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * ** *
20313189 ATTTGGTCTAAATAGTTTTTCATTTTATAAA-AAGGTTTTGTTGTTTGAATTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTAAAACTAAAAACTTATTTA
* * ** **
20313253 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACCAACTTTTGAACTTGCCAAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * **
20313318 TTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGAACAT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT-TGAACAT
* * * * * *
20313383 TCTATTCTCGGGAAATAGCAGT-ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGAT
191 TCCATGCTCGGAAAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * *
20313447 CTTTGAATCAAAAACTTATTTACGTG-GTAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGA
255 CTTTGAATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGA
* ** *
20313511 ACTTGTCAAACTTTTACGAGTTCTTTTAGAA-TTTTAGTTCCATAAAGTATTCAAGACGATCCAT
319 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCAT
** * *
20313575 TCCTTTGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCACATC
383 TCCTTCAAGCAA-TTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * ** *
20313621 ATTTGGTCTAAATAGTTTTTCATTTTATAAA-AAGGTTTTGTTGTTTGAATTAAAAACTTATTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTAAAACTAAAAACTTATTTA
* * ** **
20313685 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACCAACTTTTGAACTTGCCAAACTTTTACGAGTTC
65 CGTGAGAATTGTTTCTCTCTT-GCTCTTGGACGAAC-TTCCAACTTTTCAAACTTTTACGAGTTC
* * *
20313750 TTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACAT
128 TTTTATAACTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTT-TGAACAT
* * * * * *
20313815 TCTATTCTCGGGAAATAGCAGT-ATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGAT
191 TCCATGCTCGGAAAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * **
20313879 CTTTGAATCAAAAACTTATTTACGTGATAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTTGAA
255 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAA
* * * * * **
20313942 CTTGTCAAACTTTTACGTGTTCTTTTATAACTTCGGTTCCTTACATTATTCAAGATGATATATTC
320 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * **
20314007 CTTCGAGCAACTTTCTAAACATTCTATGCTCGAAAAATCGCATC
385 CTTCAAGCAA-TTTTTGAACATTCCATTCTCGGGAAATCGCATC
* * * * * *
20314051 ATTT-TTCTAAATTGTTTGTCATTTTATAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
* * *
20314115 GTGAGAATTGTTTCTCTCTCTTGGTTCATGGATGAACTTCCAATCTTTTCAAACTTTTACGAGTT
66 GTGAGAATTG-TT-TCTCTCTT-GCTCTTGGACGAACTTCCAA-CTTTTCAAACTTTTACGAGTT
20314180 CTTTTATAACTT
127 CTTTTATAACTT
20314192 CGGTTCCTGA
Statistics
Matches: 25367, Mismatches: 4880, Indels: 3737
0.75 0.14 0.11
Matches are distributed among these distances:
402 2 0.00
403 16 0.00
404 247 0.01
405 1329 0.05
406 1216 0.05
407 1034 0.04
408 2211 0.09
409 116 0.00
410 162 0.01
411 196 0.01
412 8 0.00
413 48 0.00
414 15 0.00
415 16 0.00
416 30 0.00
417 9 0.00
418 11 0.00
419 4 0.00
420 14 0.00
421 52 0.00
422 27 0.00
423 33 0.00
424 140 0.01
425 109 0.00
426 399 0.02
427 1889 0.07
428 6292 0.25
429 4192 0.17
430 2184 0.09
431 859 0.03
432 863 0.03
433 126 0.00
434 23 0.00
435 45 0.00
436 30 0.00
437 18 0.00
438 19 0.00
439 35 0.00
440 38 0.00
441 42 0.00
442 33 0.00
443 29 0.00
444 45 0.00
445 33 0.00
446 38 0.00
447 38 0.00
448 39 0.00
449 34 0.00
450 41 0.00
451 25 0.00
452 24 0.00
453 17 0.00
454 26 0.00
455 26 0.00
456 16 0.00
457 14 0.00
458 11 0.00
459 16 0.00
460 13 0.00
461 9 0.00
462 6 0.00
463 5 0.00
464 5 0.00
465 3 0.00
466 1 0.00
467 7 0.00
468 17 0.00
469 11 0.00
470 1 0.00
471 5 0.00
472 6 0.00
473 5 0.00
474 6 0.00
475 9 0.00
476 3 0.00
477 2 0.00
478 10 0.00
479 13 0.00
480 16 0.00
481 14 0.00
482 7 0.00
483 5 0.00
484 5 0.00
485 10 0.00
486 3 0.00
487 12 0.00
488 22 0.00
489 23 0.00
490 23 0.00
491 20 0.00
492 12 0.00
493 5 0.00
494 11 0.00
495 22 0.00
496 11 0.00
497 6 0.00
498 12 0.00
499 8 0.00
500 10 0.00
501 6 0.00
502 5 0.00
503 6 0.00
504 1 0.00
505 4 0.00
506 9 0.00
507 4 0.00
508 5 0.00
509 18 0.00
510 29 0.00
511 15 0.00
512 17 0.00
513 13 0.00
514 25 0.00
515 19 0.00
516 8 0.00
517 6 0.00
518 7 0.00
519 16 0.00
520 14 0.00
521 6 0.00
522 5 0.00
523 6 0.00
524 7 0.00
525 5 0.00
526 3 0.00
527 13 0.00
529 6 0.00
530 2 0.00
531 1 0.00
532 2 0.00
533 2 0.00
534 9 0.00
535 13 0.00
536 12 0.00
537 7 0.00
538 7 0.00
539 11 0.00
540 5 0.00
542 8 0.00
543 11 0.00
544 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (427 bp):
ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTAAAACTAAAAACTTATTTAC
GTGAGAATTGTTTCTCTCTTGCTCTTGGACGAACTTCCAACTTTTCAAACTTTTACGAGTTCTTT
TATAACTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTGAACATTCCAT
GCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACTTGTC
AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCAA
GCAATTTTTGAACATTCCATTCTCGGGAAATCGCATC
Found at i:20282634 original size:192 final size:192
Alignment explanation
Indices: 20282278--20282651 Score: 502
Period size: 192 Copynumber: 1.9 Consensus size: 192
20282268 CATGCTCGGA
* * * * *
20282278 AAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAT
1 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTCGTCTTTGAACTAAAA
* * *
20282343 ACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTT
66 ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTCCCGAACTAGTCAAACTTT
* * * *
20282408 AACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
131 AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
** *
20282470 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTT-GTTGTTTGAACTAA
1 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACA-ACTTTTCG-TCTTTGAACTAA
* ** *
20282533 AAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACT
64 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTCCCGAACTAGTCAAACT
* * *
20282598 TTAACGAGTTCT-TTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
129 TTAACGAGATCTATT-ATAACTTCGATTCCATAAAGTATTCAAGACGATACATTC
20282652 CTTCGAGCAT
Statistics
Matches: 157, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
191 4 0.03
192 153 0.97
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (192 bp):
AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTCGTCTTTGAACTAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTCCCGAACTAGTCAAACTTT
AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
Found at i:20283683 original size:192 final size:192
Alignment explanation
Indices: 20283327--20283700 Score: 493
Period size: 192 Copynumber: 1.9 Consensus size: 192
20283317 CATGCTCGGA
* * * * *
20283327 AAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAT
1 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTCGTCTTTGAACTAAAA
* * *
20283392 ACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTT
66 ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
* * * *
20283457 AACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
131 AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
** *
20283519 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTT-GTTGTTTGAACTAA
1 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACA-ACTTTTCG-TCTTTGAACTAA
* * ** *
20283582 AAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACT
64 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACT
* * *
20283647 TTAACGAGTTCT-TTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
129 TTAACGAGATCTATT-ATAACTTCGATTCCATAAAGTATTCAAGACGATACATTC
20283701 CTTCGAGCAT
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
191 4 0.03
192 152 0.97
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (192 bp):
AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTCGTCTTTGAACTAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
Found at i:20284732 original size:192 final size:192
Alignment explanation
Indices: 20284376--20284749 Score: 493
Period size: 192 Copynumber: 1.9 Consensus size: 192
20284366 CATGCTCGGA
* * * * *
20284376 AAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAT
1 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTCGTCTTTGAACTAAAA
* * *
20284441 ACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTT
66 ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
* * * *
20284506 AACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
131 AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
** *
20284568 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTT-GTTGTTTGAACTAA
1 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACA-ACTTTTCG-TCTTTGAACTAA
* * ** *
20284631 AAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACT
64 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACT
* * *
20284696 TTAACGAGTTCT-TTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
129 TTAACGAGATCTATT-ATAACTTCGATTCCATAAAGTATTCAAGACGATACATTC
20284750 CTTCGAGCAT
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
191 4 0.03
192 152 0.97
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (192 bp):
AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTCGTCTTTGAACTAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
Found at i:20285781 original size:192 final size:192
Alignment explanation
Indices: 20285425--20285798 Score: 477
Period size: 192 Copynumber: 1.9 Consensus size: 192
20285415 CATGCTCGGA
* * * *
20285425 AAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAT
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
* * *
20285490 ACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTT
66 ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
* * *
20285555 AACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGTTGGGG
131 AACGAGATCTATTATAATTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGTTGGGG
** *
20285617 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT-GTTGTTTGAACTAA
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTCG-TCTTTGAACTAA
* ** ** *
20285680 AAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGATGAACTTTCGATCTAGTCAAACT
64 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACT
* ** *
20285745 TTAACGAGTTCT-TTCATAACTTT-GATTCTTTAAAGTATTCAAGACGATCCATTC
129 TTAACGAGATCTATT-ATAA-TTTCGATTCCATAAAGTATTCAAGACGATACATTC
20285799 CTTCGAGCAT
Statistics
Matches: 155, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
191 4 0.03
192 148 0.95
193 3 0.02
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (192 bp):
AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
AACGAGATCTATTATAATTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGTTGGGG
Found at i:20286830 original size:192 final size:192
Alignment explanation
Indices: 20286481--20286847 Score: 488
Period size: 192 Copynumber: 1.9 Consensus size: 192
20286471 GGAAAATCGT
* * * *
20286481 ATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAATACTTATT
1 ATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTCGTCTTTGAACTAAAAACTTATT
* * *
20286546 TACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTTAACGAGA
66 TACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTCCCGAACTAGTCAAACTTTAACGAGA
* * * *
20286611 TCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGGAAATCAC
131 TCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGGAAATCAC
** *
20286673 ATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTT-GTTGTTTGAACTAAAAACTTA
1 ATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACA-ACTTTTCG-TCTTTGAACTAAAAACTTA
* ** *
20286736 TTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACTTTAACGA
64 TTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTCCCGAACTAGTCAAACTTTAACGA
* ** *
20286801 GTTCT-TTCATAACTTCGATTCTTTAAAGTATTCAAGACGATCCATTC
129 GATCTATT-ATAACTTCGATTCCATAAAGTATTCAAGACGATACATTC
20286848 CTTCGAGCAT
Statistics
Matches: 150, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
191 4 0.03
192 146 0.97
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (192 bp):
ATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTCGTCTTTGAACTAAAAACTTATT
TACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTCCCGAACTAGTCAAACTTTAACGAGA
TCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGGAAATCAC
Found at i:20287879 original size:192 final size:192
Alignment explanation
Indices: 20287523--20287896 Score: 484
Period size: 192 Copynumber: 1.9 Consensus size: 192
20287513 CATGCTCGGA
* * * *
20287523 AAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAT
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
* * *
20287588 ACTTATTTACGTGAGAATTGTTTCCCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTT
66 ACTTATTTACGTGAGAATTGTTTCCCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
* * * *
20287653 AACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
131 AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
** *
20287715 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT-GTTGTTTGAACTAA
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTCG-TCTTTGAACTAA
* * * ** *
20287778 AAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACT
64 AAACTTATTTACGTGAGAATTGTTTCCCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACT
* ** *
20287843 TTAACGAGTTCT-TTCATAACTTCGATTCTTTAAAGTATTCAAGACGATCCATTC
129 TTAACGAGATCTATT-ATAACTTCGATTCCATAAAGTATTCAAGACGATACATTC
20287897 CTTCGAGCAT
Statistics
Matches: 155, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
191 4 0.03
192 151 0.97
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (192 bp):
AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
ACTTATTTACGTGAGAATTGTTTCCCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
Found at i:20288927 original size:192 final size:192
Alignment explanation
Indices: 20288568--20288944 Score: 478
Period size: 192 Copynumber: 2.0 Consensus size: 192
20288558 TTCCATGCTC
* * *
20288568 GGGAAATCGCATCATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTA
1 GGGAAATCACATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTA
* * *
20288633 AATACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTTGTCAATC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTAGTCAAAC
* * * *
20288698 TTTAACGAGATCTATTGTAATTTTTGTTCCATAAAGTATTCAAGATGATACATTCAAAGCTG
131 TTTAACGAGATCTATTATAATCTTCGTTCCATAAAGTATTCAAGACGATACATTCAAAGCTG
* * *
20288760 GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG-AAA-AA-TGGTTTTGTTGTTTGAA
1 GGGAAATCACATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAACT--TTTCG-TCTTTGAA
* ** *
20288822 CTAAAAACTTATTTACGTGAGTATTGTTTCTC-TCTTGCTTCTTGGACGAACTTTCGATCTAGTC
63 CTAAAAACTTATTTACGTGAGAATTGTTTCTCTTC-TGCTTCTTGGACGAACTCCCGAACTAGTC
* * *
20288886 AAACTTTAACGAGTTCT-TTCATAA-CTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
127 AAACTTTAACGAGATCTATT-ATAATCTTCG-TTCCATAAAGTATTCAAGACGATACATTC
20288945 CTTCGAGCAT
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
189 1 0.01
190 2 0.01
191 14 0.09
192 142 0.89
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (192 bp):
GGGAAATCACATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTA
AAAACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTAGTCAAAC
TTTAACGAGATCTATTATAATCTTCGTTCCATAAAGTATTCAAGACGATACATTCAAAGCTG
Found at i:20289976 original size:192 final size:192
Alignment explanation
Indices: 20289620--20289983 Score: 500
Period size: 192 Copynumber: 1.9 Consensus size: 192
20289610 CATGCTTGGA
* * * *
20289620 AAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAT
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
* * *
20289685 ACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTT
66 ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
* * *
20289750 AACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
131 AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
** *
20289812 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT-GTTGTTTGAACTAA
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTCG-TCTTTGAACTAA
* * ** *
20289875 AAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACT
64 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACT
* *
20289940 TTAACGAGTTCT-TTCATAACTTCGATTCCTTAAAGTATTCAAGA
129 TTAACGAGATCTATT-ATAACTTCGATTCCATAAAGTATTCAAGA
20289984 CGATCCATCC
Statistics
Matches: 149, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
191 4 0.03
192 145 0.97
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (192 bp):
AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
Found at i:20291026 original size:192 final size:192
Alignment explanation
Indices: 20290670--20291043 Score: 486
Period size: 192 Copynumber: 1.9 Consensus size: 192
20290660 CATGCTCGGA
* * * *
20290670 AAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAT
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
* * *
20290735 ACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTT
66 ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
* * *
20290800 AACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
131 AACGAGATCTATTATAATTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
** *
20290862 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT-GTTGTTTGAACTAA
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTCG-TCTTTGAACTAA
* * ** *
20290925 AAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACT
64 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACT
* ** *
20290990 TTAACGAGTTCT-TTCATAACTTT-GATTCTTTAAAGTATTCAAGACGATCCATTC
129 TTAACGAGATCTATT-ATAA-TTTCGATTCCATAAAGTATTCAAGACGATACATTC
20291044 CTTCGAGCAT
Statistics
Matches: 156, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
191 4 0.03
192 149 0.96
193 3 0.02
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (192 bp):
AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
AACGAGATCTATTATAATTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
Found at i:20292075 original size:192 final size:192
Alignment explanation
Indices: 20291719--20292092 Score: 502
Period size: 192 Copynumber: 1.9 Consensus size: 192
20291709 CATGCTCGGA
* * * * *
20291719 AAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAT
1 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTCGTCTTTGAACTAAAA
* * *
20291784 ACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTT
66 ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTCCCGAACTAGTCAAACTTT
* * * *
20291849 AACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
131 AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
** *
20291911 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA-ATGGTTTT-GTTGTTTGAACTAA
1 AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACA-ACTTTTCG-TCTTTGAACTAA
* ** *
20291974 AAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACT
64 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTCCCGAACTAGTCAAACT
* * *
20292039 TTAACGAGTTCT-TTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
129 TTAACGAGATCTATT-ATAACTTCGATTCCATAAAGTATTCAAGACGATACATTC
20292093 CTTCGAGCAT
Statistics
Matches: 157, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
191 4 0.03
192 153 0.97
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (192 bp):
AAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTCGTCTTTGAACTAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTCCCGAACTAGTCAAACTTT
AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
Found at i:20294172 original size:192 final size:192
Alignment explanation
Indices: 20293816--20294179 Score: 500
Period size: 192 Copynumber: 1.9 Consensus size: 192
20293806 CATGCTCGGA
* * * *
20293816 AAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAT
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
* * *
20293881 ACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTT
66 ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
* * *
20293946 AACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
131 AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
** *
20294008 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT-GTTGTTTGAACTAA
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTCG-TCTTTGAACTAA
* * ** *
20294071 AAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACT
64 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACT
* *
20294136 TTAACGAGTTCT-TTCATAACTTCGATTCCTTAAAGTATTCAAGA
129 TTAACGAGATCTATT-ATAACTTCGATTCCATAAAGTATTCAAGA
20294180 CGATCCATCC
Statistics
Matches: 149, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
191 4 0.03
192 145 0.97
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (192 bp):
AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
Found at i:20295190 original size:192 final size:192
Alignment explanation
Indices: 20294863--20295229 Score: 483
Period size: 192 Copynumber: 1.9 Consensus size: 192
20294853 TTCCATGCTC
* * *
20294863 GGGAAATCGCATCATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTA
1 GGGAAATCACATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTA
* * *
20294928 AATACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTTGTCAATC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTAGTCAAAC
* *
20294993 TTTAACGAGATCTATT-GTAATTTTTG-TTCCATAAAGTATTCAAGATGATACATTCAAAGCTG
131 TTTAACGAGATCT-TTCATAA-CTTTGATTCCATAAAGTATTCAAGATGATACATTCAAAGCTG
* *** *
20295055 GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGATAAA-TGGTTTT-GTTGTTTGAAC
1 GGGAAATCACATCATTTGGTATAAATAGTTTGTCATTTTG-TAAACAACTTTTCG-TCTTTGAAC
* ** *
20295118 TAAAAACTTATTTACGTGAGTATTGTTTCTC-TCTTGCTTCTTGGACGAACTTTCGATCTAGTCA
64 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTC-TGCTTCTTGGACGAACTCCCGAACTAGTCA
* *
20295182 AACTTTAACGAGTTCTTTCATAACTTTGATTCCTTAAAGTATTCAAGA
128 AACTTTAACGAGATCTTTCATAACTTTGATTCCATAAAGTATTCAAGA
20295230 CGATCCATCC
Statistics
Matches: 151, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
191 9 0.06
192 138 0.91
193 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (192 bp):
GGGAAATCACATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTA
AAAACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTAGTCAAAC
TTTAACGAGATCTTTCATAACTTTGATTCCATAAAGTATTCAAGATGATACATTCAAAGCTG
Found at i:20296271 original size:192 final size:192
Alignment explanation
Indices: 20295915--20296278 Score: 470
Period size: 192 Copynumber: 1.9 Consensus size: 192
20295905 CATGCTTGGA
* * * *
20295915 AAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAT
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
* *
20295980 ACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTTGTCAATCTTT
66 ACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTAGTCAAACTTT
* * *
20296045 AACGAGATCTATTGTAATTTTTGTTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
131 AACGAGATCTATTATAATCTTCGTTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
* *
20296107 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG-AAA-AA-TGGTTTTGTTGTTTGAACTA
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT--TTTCG-TCTTTGAACTA
* ** *
20296169 AAAACTTATTTACGTGAGTATTGTTTCTC-TCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAA
63 AAAACTTATTTACGTGAGAATTGTTTCTCTTC-TGCTTCTTGGACGAACTCCCGAACTAGTCAAA
* * *
20296233 CTTTAACGAGTTCT-TTCATGA-CTTCGATTCCTTAAAGTATTCAAGA
127 CTTTAACGAGATCTATT-ATAATCTTCG-TTCCATAAAGTATTCAAGA
20296279 CGATCCATCC
Statistics
Matches: 148, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
189 1 0.01
190 2 0.01
191 14 0.09
192 131 0.89
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (192 bp):
AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
ACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTAGTCAAACTTT
AACGAGATCTATTATAATCTTCGTTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
Found at i:20297289 original size:192 final size:192
Alignment explanation
Indices: 20296962--20297338 Score: 492
Period size: 192 Copynumber: 2.0 Consensus size: 192
20296952 TTCCATGCTC
** * *
20296962 GGGAAATCGTATCATTTGGTATATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTA
1 GGGAAATCACATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTA
* * *
20297027 AATACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTTGTCAATC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTAGTCAAAC
* * * *
20297092 TTTAACGAGATCTATT-GTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTG
131 TTTAACGAGATCT-TTCATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTG
* ** *
20297154 GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT-GTTGTTTGAAC
1 GGGAAATCACATCATTTGGTATAAATAGTTTGTCATTTTGTAAACA-ACTTTTCG-TCTTTGAAC
* ** *
20297217 TAAAAACTTATTTACGTGAGTATTGTTTCTC-TCTTGCTTCTTGGACGAACTTTCGATCTAGTCA
64 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTC-TGCTTCTTGGACGAACTCCCGAACTAGTCA
* * *
20297281 AACTTTAACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTC
128 AACTTTAACGAGATCTTTCATAACTTCGATTCCATAAAGTATTCAAGACGATACATTC
20297339 CTTCGAGCAT
Statistics
Matches: 159, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
191 6 0.04
192 153 0.96
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.40
Consensus pattern (192 bp):
GGGAAATCACATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTA
AAAACTTATTTACGTGAGAATTGTTTCTCTTCTGCTTCTTGGACGAACTCCCGAACTAGTCAAAC
TTTAACGAGATCTTTCATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTG
Found at i:20298369 original size:192 final size:192
Alignment explanation
Indices: 20297997--20298387 Score: 538
Period size: 192 Copynumber: 2.0 Consensus size: 192
20297987 AATTTTTCGA
* *
20297997 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCAAGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
20298062 CGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCC
66 CGTCTTTGAACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTCCC
* * * * * *
20298127 GAACTTGTCAATCTTTAACGAGATCTATTGTAATTTCTGTTCCATAAAGTATTCAAGATGAT
131 GAACTAGTCAAACTTTAACGAGATCTATTATAACTTCTGTTACATAAAGTATTCAAGACGAT
**
20298189 ACATTCCAAGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTT
1 ACATTCCAAGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTT
* * *
20298253 T-GTTGTTTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTT
65 TCG-TCTTTGAACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTC
* * *
20298317 TCGAACTAGTCAAACTTTAACGAGTTCT-TTCATAACTT-TGATTACTTAAAGTATTCAAGACGA
129 CCGAACTAGTCAAACTTTAACGAGATCTATT-ATAACTTCTG-TTACATAAAGTATTCAAGACGA
20298380 T
192 T
*
20298381 CCATTCC
1 ACATTCC
20298388 TTCGAGCATT
Statistics
Matches: 175, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
191 6 0.03
192 169 0.97
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (192 bp):
ACATTCCAAGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
CGTCTTTGAACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTCCC
GAACTAGTCAAACTTTAACGAGATCTATTATAACTTCTGTTACATAAAGTATTCAAGACGAT
Found at i:20299135 original size:213 final size:214
Alignment explanation
Indices: 20298189--20299245 Score: 1043
Period size: 213 Copynumber: 4.9 Consensus size: 214
20298179 TCAAGATGAT
* * *
20298189 ACATTCCAAGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTT
1 ACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTT
* * *
20298253 T-GTTGTTTGAACTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTT-GCTTCTTGGACGAACT
65 TCG-TCTTTGAA-TTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGC-TCTTGGACGAAC-
* ** * * * *
20298316 TTCGAACTAGTCAAACTTTAACGAGTTCTTTCATAACTT-TGATTACTTAAAGTATTCAAGACGA
126 TTCCAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGA-TCCTTAAAGTATTCAAGACGA
* * **
20298380 TCCATTCCTTCGAGCATTTTTTTGA
190 TCCATTCCTTCAAGCAATTTTTCAA
* * * * * *
20298405 ACATTCTATTCTC-CAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTT
1 ACATTCCATGCTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* ** * *
20298469 TGGTCTTTG-ATTCAAAAACTTATTTACGTGAGAATT-AAT-TCTCTTGGTTCTTGGACGAACTC
65 TCGTCTTTGAATT--AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTT
* * *
20298531 CCGAACTTGTT-AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACAAT
128 CC-AACTT-TTCAAACTTTTACGAGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGACGAT
* ** * *
20298595 ACATTCCTTCTGGGAA-CTTTCTAA
191 CCATTCCTTCAAGCAATTTTTC-AA
* * * *
20298619 ACATTCTATGCTCGAAAAATCGCATCATTT-TTCTAAATAGTTTCTCATTTTGTAAACAAGTTTT
1 ACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * * *
20298683 GGTCTTTAAATTTAAAACTTATTTTCGTGAGAATTTTTTCTCCCTCTTGGTTCTTGGAAGAACTT
66 CGTCTTTGAA-TTAAAACTTATTTACGTGAGAATTGTTTCT--CTCTTGGCTCTTGGACGAACTT
* *
20298748 CCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
128 CC-AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGACGATC
* *
20298813 CATTCCTTTAAGCAATTTTT-GA
192 CATTCCTTCAAGCAATTTTTCAA
** * * *
20298835 ACATTCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAG-TTT
1 ACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
** ** * * *
20298899 CGATCTCTAAAACGAAAACTTATTTACATGAGAATTGTTTCTC-GTT-GCTGTTGGACGAACTTC
66 CG-TCT-TTGAATTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTC
* * *
20298962 CACACTTTTCAAACTTTTTCGAGTTCTTTTATAACTT-GGATCCTTATAGCATTCAAGACGATCC
129 CA-ACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGACGATCC
*
20299026 ATTCCATCAAGCAATTTTTCAA
193 ATTCCTTCAAGCAATTTTTCAA
* *
20299048 ACATTCCATGCTCGGAAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * *
20299113 CGTCTTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCT-TTTGCTTCTTGGACAAACTCC
66 CGTCTTTGAATTAAA-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGC-TCTTGGACGAACTTC
* * * * * * * * * * *
20299177 CGAACTTGTCAATCTTTAACGAGATCTATTGTAATTTC-TATTCCATAAAGTATTCAAGATGATA
129 C-AACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGA-TCCTTAAAGTATTCAAGACGATC
20299241 CATTC
192 CATTC
20299246 AAAGCTGGGG
Statistics
Matches: 696, Mismatches: 113, Indels: 64
0.80 0.13 0.07
Matches are distributed among these distances:
212 47 0.07
213 197 0.28
214 114 0.16
215 50 0.07
216 135 0.19
217 146 0.21
218 7 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (214 bp):
ACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
CGTCTTTGAATTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTCCA
ACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGACGATCCATT
CCTTCAAGCAATTTTTCAA
Found at i:20299420 original size:192 final size:192
Alignment explanation
Indices: 20299064--20299437 Score: 493
Period size: 192 Copynumber: 1.9 Consensus size: 192
20299054 CATGCTCGGA
* * * *
20299064 AAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAT
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
* * *
20299129 ACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATCTTT
66 ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
* * * *
20299194 AACGAGATCTATTGTAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTGGGG
131 AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
** *
20299256 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT-GTTGTTTGAACTAA
1 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTCG-TCTTTGAACTAA
* * ** *
20299319 AAACTTATTTACGTGAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGATCTAGTCAAACT
64 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACT
* ** *
20299384 TTAACGAGTTCT-TTCATAACTTCGATTCTTTAAAGTATTCAAGACGATCCATTC
129 TTAACGAGATCTATT-ATAACTTCGATTCCATAAAGTATTCAAGACGATACATTC
20299438 CTTCGAGCAT
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
191 4 0.03
192 152 0.97
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (192 bp):
AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAACTTT
AACGAGATCTATTATAACTTCGATTCCATAAAGTATTCAAGACGATACATTCAAAGCTGGGG
Found at i:20300460 original size:192 final size:192
Alignment explanation
Indices: 20300111--20300487 Score: 490
Period size: 192 Copynumber: 2.0 Consensus size: 192
20300101 TTCCATGCTC
* * * *
20300111 GGGAAAACGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTT
1 GGGAAAACACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTA
* * * * *
20300176 AATACTTATTTACGTGAGAATTTTTTCTCTTTTGCTTCTTGGACAAACTCCCGAACTTGTCAATC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAAC
* *
20300241 TTTAACGAGATCTATTATAATTTCTATTCCATAAAGTATTCAAGATGATACATTCAAAGCTG
131 TTTAACGAGATCTATTATAACTTCTATTCCATAAAGTATTCAAGACGATACATTCAAAGCTG
* ** *
20300303 GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTT-GTTGTTTGAAC
1 GGGAAAACACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTCG-TCTTTGAAC
* * ** *
20300366 TAAAAACTTATTTACGTGAGCATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGAGCTAGTCAA
64 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAA
* * * *
20300431 ACTTTAACGAGTTCT-TTCATAACTTCTATTTCTTAAAGTATTCAAGACGATCCATTC
129 ACTTTAACGAGATCTATT-ATAACTTCTATTCCATAAAGTATTCAAGACGATACATTC
20300488 CTTCGAGCAT
Statistics
Matches: 158, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
191 4 0.03
192 154 0.97
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (192 bp):
GGGAAAACACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAACTA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACAAACTCCCGAACTAGTCAAAC
TTTAACGAGATCTATTATAACTTCTATTCCATAAAGTATTCAAGACGATACATTCAAAGCTG
Found at i:20301236 original size:213 final size:214
Alignment explanation
Indices: 20300303--20302812 Score: 2313
Period size: 215 Copynumber: 11.8 Consensus size: 214
20300293 TTCAAAGCTG
* * * * *
20300303 GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATGGTTTTGTTGTTTGAACT
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTGGTCTTTGAATT
* * * * **
20300367 AAAAACTTATTTACGTGAGCATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGAGCTAGTCAAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCT-TTGC-TCTTGGACGAACTTCCAAACTTTTCAAA
* * ** * *
20300432 CTTTAACGAGTTCTTTCATAACTTCTATTTCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
128 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA
* * * *
20300497 TTTTTTTGAACATTCTATTCTC
193 ATTTTTCGAACATTCCATGCTC
** * * * *
20300519 TAGAAATAGCAGCATTTTGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTG-ATTC
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-
** * * **
20300583 AAAAACTTATTTACGTGAGAATTAATTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTT-AAAC
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTTTGCTCTTGGACGAACTTCCAAACTT-TTCAAAC
* * * **
20300647 TGTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTTAGCAA
129 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA
*
20300712 TTTTT-GAACATTCCAAT-TTC
194 TTTTTCGAACATTCC-ATGCTC
* * * * * **
20300732 -GGAAAACTGCACCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAAC
1 GGGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT
* * *
20300796 AAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCT-TT-GCTCTTGGACGAACTTCCAAACTTTTCAAA
* * *
20300861 CTTTTACGAGTTCTTTTATAACTGCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGCA
128 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA
**
20300926 ATTTTT-GAACATTCCATTATC
193 ATTTTTCGAACATTCCATGCTC
* * * * * * **
20300947 GGGAAATCGCATCATTTAGTCTAAATTGTTTTTCATTTTGTAAACAAGTTTCGATCTTTAAAACG
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT-GAATT
* * * *
20301012 AAAAA-TTATTTACATGAGAATTGTTTCTCTTTGCTGTTGGACGAACTTCTACACTTTTCAAACT
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTTTGCTCTTGGACGAACTTCCAAACTTTTCAAACT
* * * * *
20301076 TTTTCGAGTT-TTGTTATAACTT-GGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAA
130 TTTACGAGTTCTT-TTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA
* * *
20301139 TTTTTCAAAAATTCCATGCTT
194 TTTTTCGAACATTCCATGCTC
* * * *
20301160 GGGAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGCCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * *
20301225 AATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTGCCGAACTTGTGAATC
66 AAAACTTATTTACGTGAGAATTGTTTCTC-TTTGC-TCTTGGACGAACTTCCAAACTTTTCAAAC
* * * * * * * * *
20301290 TTTAACGAGATCTATTGTAATTTCTGTTCCATAAAGTATTCAAGATGATACATT-C--CAAGC--
129 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA
* * *
20301350 --TCTGGAA-A-TCGCAT-CATT
194 TTTTTCGAACATTC-CATGC-TC
* ** * **** ***
20301368 TGG---TCTAAAT-AGTTT-GTC---AT--TTTGTAAAAAGGT---TTTG--TT-G--TTTGAAT
1 GGGAAATC-GCATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
*** **
20301415 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTTTGAACTAGTCAA
64 TAAAAACTTATTTACGTGAGAATTGTTTCTCT-TTGC-TCTTGGACGAACTTCCAAACTTTTCAA
* * **
20301480 ACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGTGC
127 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
** * *
20301545 AATTTTTTTAACATTCTATTCTC
192 AATTTTTCGAACATTCCATGCTC
* * * * * *
20301568 GGGAATTAGCAACATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAGTCA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * * *
20301633 AAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCCTGGACGAACTTTCGAACTTGTCAAAATT
66 AAAACTTATTTACGTGAGAATTGTTTCTCTTTGCTCTTGGACGAACTTCCAAACTTTTCAAACTT
* * * ** *
20301698 TTACGAGTTCTTTTATAACTTCGGTTCCTTATAGTATTCAAGACGATGCATTCTTTTGAGCAA-C
131 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATT
* *
20301762 TTTCTAAACATTCTATGCTC
196 TTTC-GAACATTCCATGCTC
** * * *
20301782 GAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGG-CATTTAAATT
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTTGAATT
* * * * * * *
20301845 AAAAACTTATTTATGTGGGAATTATTTCTCTCTCTTGCTTCATGGACGAATTTCCAAAATTTTTA
65 AAAAACTTATTTACGTGAGAATT-GTT-TCTCT-TTGC-TCTTGGACGAACTTCCAAACTTTTCA
* *
20301910 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGACGATCCATTCCTTTAAG
126 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAG
* *
20301975 CAACTTTT-GAACATTCCATTCTC
191 CAATTTTTCGAACATTCCATGCTC
* * * * * **
20301998 GGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCGTTAAAACA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * * *
20302063 AAAACTTATTTACGTGCGAGTTGTTTCTCCTAGCTGTTGGACGATCTTCCAAAATTTTCAAACTT
66 AAAACTTATTTACGTGAGAATTGTTTCTCTTTGCTCTTGGACGAACTTCCAAACTTTTCAAACTT
* * * * *
20302128 TTTCGAGTTCTTTTATAACTT-GGATCCTTATAGCATTCAAGACGATCCATTCCATCAAGCAATT
131 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATT
*
20302192 TTTCAAACATTCCATGCTC
196 TTTCGAACATTCCATGCTC
* * * *
20302211 GGGAAATCGCATCATTTGGTCTATATAGCTTGTCATTTTGTAAACAACTTTTGGTCTTAGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * *
20302276 AATACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCCTT-GACGAACTTCCAAACTTGTCAAA
66 AAAACTTATTTACGTGAGAATTGTTTCTC-TTT-GCT-CTTGGACGAACTTCCAAACTTTTCAAA
* * * * *
20302340 CTTTTACTAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCA
128 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA
* *
20302405 A-TTTTCTGAACATTCTATGCTT
193 ATTTTTC-GAACATTCCATGCTC
*** * * ** * * *
20302427 AAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAATTAACTTTTTGTATTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * *
20302491 AATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTTTTGGATGAACTTTCGAACTTGTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTC-TTTGC-TCTTGGACGAACTTCCAAACTTTTCAAAC
* * * * * * *
20302556 TTTTACGATTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCTACTCCTTCAATCAA
129 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA
* * *
20302621 TTTTCCAAACAATCCATGCTC
194 TTTTTCGAACATTCCATGCTC
** * * * *
20302642 GGGAAATCGCATCATTTCATCTAAATAGTTTGTTATTTTGTAAAAAAGGTTTTGTTGTTTGAATT
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATT
* * ***
20302707 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGCCAAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCT-TT-GCTCTTGGACGAACTTCCAAACTTTTCAAA
* * *
20302772 CTTTTACGAGTTCTTTCATAACTTTGGTGCCTTAAAGTATT
128 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
20302813 TAGTCTAAAT
Statistics
Matches: 1879, Mismatches: 341, Indels: 147
0.79 0.14 0.06
Matches are distributed among these distances:
191 1 0.00
192 108 0.06
193 1 0.00
194 1 0.00
195 5 0.00
199 4 0.00
200 14 0.01
201 3 0.00
202 6 0.00
203 5 0.00
205 6 0.00
206 7 0.00
207 3 0.00
208 15 0.01
209 4 0.00
211 1 0.00
212 92 0.05
213 420 0.22
214 215 0.11
215 450 0.24
216 273 0.15
217 240 0.13
218 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (214 bp):
GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
AAAACTTATTTACGTGAGAATTGTTTCTCTTTGCTCTTGGACGAACTTCCAAACTTTTCAAACTT
TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATT
TTTCGAACATTCCATGCTC
Found at i:20301519 original size:192 final size:192
Alignment explanation
Indices: 20301161--20301526 Score: 522
Period size: 192 Copynumber: 1.9 Consensus size: 192
20301151 TCCATGCTTG
*
20301161 GGAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTCGCCTTTGAATTAA
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGCCTTTGAATTAA
* * * * *
20301226 ATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTGCCGAACTTGTGAATCT
66 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTGCCGAACTAGTCAAACT
* * *
20301291 TTAACGAGATCTATTGTAATTTCTGTTCCATAAAGTATTCAAGATGATACATTCCAAGCTCT
131 TTAACGAGATCTATTATAACTTCGGTTCCATAAAGTATTCAAGATGATACATTCCAAGCTCT
* **
20301353 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTT-GTTGTTTGAATT
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTTCG-CCTTTGAATT
***
20301416 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTTTGAACTAGTCAAA
64 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTGCCGAACTAGTCAAA
* * *
20301481 CTTTTACGAGTTCT-TTCATAACTTCGGTTCCTTAAAGTATTCAAGA
129 CTTTAACGAGATCTATT-ATAACTTCGGTTCCATAAAGTATTCAAGA
20301527 CAATCCATTC
Statistics
Matches: 153, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
191 5 0.03
192 148 0.97
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (192 bp):
GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGCCTTTGAATTAA
AAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTGCCGAACTAGTCAAACT
TTAACGAGATCTATTATAACTTCGGTTCCATAAAGTATTCAAGATGATACATTCCAAGCTCT
Found at i:20302491 original size:215 final size:215
Alignment explanation
Indices: 20301339--20302812 Score: 1615
Period size: 217 Copynumber: 6.8 Consensus size: 215
20301329 TCAAGATGAT
* * *
20301339 ACATTCCAAGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
*
20301403 TGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTT
66 TG-TATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTT-GACGAACTTT
** * * *
20301468 TGAACTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACAATCC
129 CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
** * *
20301533 ATTCCTTCGTGCAATTTTTTTA
194 ATTCCTTCAAGCAATTTTCTAA
* * * * * *
20301555 ACATTCTATTCTCGGGAATTAGCAACATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * * *
20301620 GGTCTTTGAGTCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCCTGGACGAACTTTC
66 TGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTT-CTTGACGAACTTTC
* * * *
20301683 GAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTATAGTATTCAAGACGATGCA
130 AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* ** *
20301748 TTCTTTTGAGCAACTTTCTAA
195 TTCCTTCAAGCAATTTTCTAA
* ** * *
20301769 ACATTCTATGCTCGAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * * * *
20301833 GGCATTTAAATTAAAAACTTATTTATGTGGGAATTATTTCTCTCTCTTGCTTCATGGACGAA-TT
66 TGTATTTGAATTAAAAACTTATTTACGTGAGAATT-GTT-TCTCTCTTGCTTC-TTGACGAACTT
* * * *
20301897 TCCAAAATTTTTAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGACGAT
128 T-CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * *
20301962 CCATTCCTTTAAGCAACTTT-TGA
192 CCATTCCTTCAAGCAATTTTCTAA
* * *
20301985 ACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAG-TTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* ** * * * * *
20302049 TG-ATCGTTAAAACAAAAACTTATTTACGTGCGAGTTGTTTCTC-CTAGCTGT-TGGACGATCTT
66 TGTAT--TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCT-TCTTGACGAACTT
* * * * * * *
20302111 CCAAAATTTTCAAACTTTTTCGAGTTCTTTTATAACTT-GGATCCTTATAGCATTCAAGACGATC
128 TCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
*
20302175 CATTCCATCAAGCAATTTT-TCAA
193 CATTCCTTCAAGCAATTTTCT-AA
* * *
20302198 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTATATAGCTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * * * *
20302263 GGTCTTAGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCCTTGACGAACTTCC
66 TGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTT-CTTGACGAACTTTC
* * * *
20302328 AAACTTGTCAAACTTTTACTAGTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCCA
130 AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* *
20302393 TTCCTTCGAGCAATTTTCTGA
195 TTCCTTCAAGCAATTTTCTAA
* **** * * ** *
20302414 ACATTCTATGCTTAAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAATTAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * *
20302478 TGTATTTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTTTTGGATGAACTTTC
66 TGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTT-GACGAACTTTC
* * * * * *
20302543 GAACTTGTCAAACTTTTACGATTTCTTTTATAATTTCAGTTCCATAAAGTATTCAAGACGATCTA
130 AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * *
20302608 CTCCTTCAATCAATTTTCCAA
195 TTCCTTCAAGCAATTTTCTAA
* ** * * *
20302629 ACAATCCATGCTCGGGAAATCGCATCATTTCATCTAAATAGTTTGTTATTTTGTAAAAAAGGTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* *
20302694 TGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT
66 TG-TATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTT-GACGAACTTT
* * * * *
20302759 CAAACTAGCCAAACTTTTACGAGTTCTTTCATAACTTTGGTGCCTTAAAGTATT
129 CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
20302813 TAGTCTAAAT
Statistics
Matches: 1061, Mismatches: 173, Indels: 47
0.83 0.14 0.04
Matches are distributed among these distances:
212 39 0.04
213 188 0.18
214 133 0.13
215 239 0.23
216 212 0.20
217 250 0.24
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
TGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGACGAACTTTCA
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCAAGCAATTTTCTAA
Found at i:20302947 original size:152 final size:155
Alignment explanation
Indices: 20302661--20302964 Score: 404
Period size: 152 Copynumber: 2.0 Consensus size: 155
20302651 CATCATTTCA
* * * *
20302661 TCTAAATAGTTTGTTATTTTGTAAAAAAGGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAG
1 TCTAAATAGTTTGTCATTTTGGAAAAAAGGTTTTGTTCTTTGAATTAAAAACTAATTTACGTGAG
* * * *
20302726 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGCCAAACTTTTACGAGTTCTTTCAT
66 AATTGATTCTCTCTTGGTCCTTGGACGAACTTCCAAACTAGCCAAACTTTTACGAGTTCTTTCAC
*
20302791 AACTTTGGTGCCTTAAAGTATTTAG
131 AACTTGGGTGCCTTAAAGTATTTAG
*
20302816 TCTAAATAGTTTGTCATTTTGGAAACAA-GTTTTCG-TCTTTG-ATTCAAAAACTAATTTACGTG
1 TCTAAATAGTTTGTCATTTTGGAAAAAAGGTTTT-GTTCTTTGAATT-AAAAACTAATTTACGTG
* *
20302878 AGAATT-ATT-TCTCTTGGTCCTTGGACGAACTTCCGAAC-ATCTCAAACTTTTACGAGTTCTTT
64 AGAATTGATTCTCTCTTGGTCCTTGGACGAACTTCCAAACTAGC-CAAACTTTTACGAGTTCTTT
* * *
20302940 TACAACTTGGGTTCCTTACAGTATT
128 CACAACTTGGGTGCCTTAAAGTATT
20302965 CAAGACGATA
Statistics
Matches: 131, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
151 2 0.02
152 66 0.50
153 5 0.04
154 32 0.24
155 26 0.20
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (155 bp):
TCTAAATAGTTTGTCATTTTGGAAAAAAGGTTTTGTTCTTTGAATTAAAAACTAATTTACGTGAG
AATTGATTCTCTCTTGGTCCTTGGACGAACTTCCAAACTAGCCAAACTTTTACGAGTTCTTTCAC
AACTTGGGTGCCTTAAAGTATTTAG
Found at i:20303241 original size:193 final size:191
Alignment explanation
Indices: 20302860--20303249 Score: 430
Period size: 193 Copynumber: 2.0 Consensus size: 191
20302850 GTCTTTGATT
* *
20302860 CAAA-AACTAATTTACGTGAGAATTATTTCTCTTGGTCCTTGGACGAACTTCCGAACATCTCAAA
1 CAAACAACTAATTTACGTGAGAATTATTTCTCTTGGTCCTTGGAAGAACTTCCAAACATCTCAAA
* * * *
20302924 CTTTTACGAGTTCTTTTACAACTTGGGTTCCTTACAGTATTCAAGACGATACATTCCTTCGAGCA
66 CTTTTACGAGTTCTTTTACAACTTCGATTCCTTACAATATTCAAGACGATACATTCCTTCAAGCA
* * * * **
20302989 ACTTTCTAAACTTTCTATGCTCGAAAAATAGCCTCATTTTTCTAAATTGTTTGTCATTTTG
131 ACTTTCTAAACATTCCATGCTCGAAAAATAGCATCATTTGTCTAAATAATTTGTCATTTTG
* * * * *
20303050 CAAACAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAAGAGCTTCCAAACCTTTCA
1 CAAACAACTAATTTACGTGAGAATTA-TT-TCTCTTGGTCCTTGGAAGAACTTCCAAACATCTCA
* * * * * *
20303115 AGCTTTTTCGAGTTCTTTTATAACTTCGATTCCTTA-AATAATTCAATACGATCCATTCCTTTAA
64 AACTTTTACGAGTTCTTTTACAACTTCGATTCCTTACAAT-ATTCAAGACGATACATTCCTTCAA
* * * * *
20303179 GCAA-TTTTTGAACATTCCATTCTCGAGAAATCA-CATCATTTAGTGTAAATAATTCT-TCATTT
128 GCAACTTTCTAAACATTCCATGCTCGAAAAAT-AGCATCATTT-GTCTAAATAATT-TGTCATTT
20303241 TG
190 TG
*
20303243 TAAACAA
1 CAAACAA
20303250 GTTTTGGTCT
Statistics
Matches: 164, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
190 4 0.02
191 20 0.12
192 32 0.20
193 107 0.65
194 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (191 bp):
CAAACAACTAATTTACGTGAGAATTATTTCTCTTGGTCCTTGGAAGAACTTCCAAACATCTCAAA
CTTTTACGAGTTCTTTTACAACTTCGATTCCTTACAATATTCAAGACGATACATTCCTTCAAGCA
ACTTTCTAAACATTCCATGCTCGAAAAATAGCATCATTTGTCTAAATAATTTGTCATTTTG
Found at i:20303662 original size:216 final size:215
Alignment explanation
Indices: 20303050--20304957 Score: 2128
Period size: 216 Copynumber: 8.9 Consensus size: 215
20303040 TGTCATTTTG
* * * * * *
20303050 CAAACAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAAGAGCTTCCAAACCTT-TC
1 CAAA-AACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTTCCGAA-CTTGTC
* * * * *
20303114 AAGCTTTTTCGAGTTCTTTTATAACTTCGATTCCTTAAA-TAATTCAATACGATCCATTCCTTTA
64 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT-ATTCAAGACGATCCATTCCTTCA
* * * * * *
20303178 AGCAATTTTTGAACATTCCATTCTCGAGAAATCACATCATTTAGTGTAAATAATTCT-TCATTTT
128 AGCAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTT
*
20303242 GTAAACAAGTTTTGGTCTTTAAAA
192 GTAAACAAGTTTTGGTCTTTAAAT
* * * *
20303266 CGAAAACTTATTTACGTGAGAATTATTTCTC-TTGGC-TGTTGGACGAACTTCCGAACTAT-TCA
1 CAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTTCCGAACT-TGTCA
* *
20303328 AACTTTTACGAGTTCTTTTATAACTT-GGATT-CTTATAGTATTCAAGACGATCCATTCCATCAA
65 AACTTTTACGAGTTCTTTTATAACTTCGG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCAA
* * * * *
20303391 GCAATTTTTCGAACATTCGATGCTCGAGAAATTGCATCATTTGGTGTATATAGTTTGTCATTTTG
129 GCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * *
20303456 TAAACAACTTTTCGTCTTTGAAT
193 TAAACAAGTTTTGGTCTTTAAAT
** * *
20303479 TGAATACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTTGTCAA
1 CAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * * * **
20303544 ACTTTAACGAGTTCTATTATAATTTCAGTTCCATAAAGTATTCAAGACGATACATTCCTTTGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
*** * * * *
20303609 AATTTGCCAAATATTCCAAGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTATA
131 AATTT-TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * *
20303674 AA-AAGGTTTTGTTGTTTGACT
195 AACAA-GTTTTGGTCTTTAAAT
* * * * * *
20303695 TAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTTCGAACTAGTCAA
1 CAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20303760 ACTTTTACGGGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
* * * * * * *
20303825 AATTTTCTAAACATTCTATTCTCGGGAATTAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGA
131 AATTTT-TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
20303890 AACAAGTTTTGGTCTTTGAAT
195 AACAAGTTTTGGTCTTTAAAT
* *
20303911 CAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAACTTCCGAACTAGTCAA
1 CAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
20303974 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGATGATACATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
* * * ** * *
20304039 AAATTTCTAAACATTCCATGCTTGAAAAATCGCATCATTT-TTCTAAATTA-TTTTTCATTTTGT
131 -AATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTTGT
20304102 AAACAAGTTTTGGTCTTTAAAT
194 AAACAAGTTTTGGTCTTTAAAT
* * * * * *
20304124 TAAAAACTTATTTTCGTGAGAATT-TTCTCTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTT
1 CAAAAACTTATTTACGTGAGAATTGTT-TCTCT-T-TTGCTTCTTGGACGAACTTCCGAACTTGT
* * **
20304188 CAAACTTTTATGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTT
63 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCA
* * * * *
20304253 AGCAATTTTTGAACATTCCAAT-TTC-GGAAAACTGTATCATTTAGTCTAAATAGTTTTTCATTT
128 AGCAATTTTTGAACATTCC-ATGCTCGGGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTT
*
20304316 TGTAAACAAGTTTTGGTCTTTAAAA
191 TGTAAACAAGTTTTGGTCTTTAAAT
* * * * * *
20304341 CAAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAA
1 CAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTTCCGAACTTGTCAA
* *
20304406 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
** * * *
20304471 AATTTTTGAACATTCCATTATCGGGAAATCGCATCATGTAGTCTAAATAGTTTTTCATTTTGTAA
131 AATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
20304536 ACAAGTTTCGGTCTTTAAAA
196 ACAAGTTTTGGTCTTTAAAT
* * ** * * *
20304556 CGAAAGCTTATTTAAATGAGAATTGTTTCTC-TTTGC-TGTTGGACGAACTTCCAAACTTTTCAA
1 CAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20304619 ACTTTTTCGAGTTCTTTTATAACTT-GGATCCTTATAGTATTCAAGACGATCCATT-CTATCAAG
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCAAG
* * * * *
20304682 CAATTTTTCGAACATTCAATGCTCGGGAATTTGCATCATTTGGTGTATATAGTTTGTCATTTTGT
130 CAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
20304747 AAACAACTTTTCGTCTTTGAAT
194 AAACAAGTTTTGGTCTTTAAAT
** * * *
20304769 TGAATACTTATTTATGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTCCCGAACTTGTCAA
1 CAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * ** * * * *
20304834 ACATTAACGAGTTCTATTATAATTTCATTTCCATAAAGTATTCAAGGCGATACATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
* * *
20304899 AATTAGTGGAACATTCCAAGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
131 AATT-TTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
20304958 ATTCTTAGAC
Statistics
Matches: 1449, Mismatches: 208, Indels: 70
0.84 0.12 0.04
Matches are distributed among these distances:
211 2 0.00
212 80 0.06
213 341 0.24
214 133 0.09
215 317 0.22
216 415 0.29
217 159 0.11
218 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (215 bp):
CAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGCTTCTTGGACGAACTTCCGAACTTGTCAA
ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
AATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGTCTTTAAAT
Found at i:20305091 original size:153 final size:153
Alignment explanation
Indices: 20304822--20305109 Score: 355
Period size: 153 Copynumber: 1.9 Consensus size: 153
20304812 GACGAACTCC
* * * *
20304822 CGAACTTGTCAAACATTAACGAGTTCTATTATAATTTCATTTCCATAAAGTATTCAAGGCGATAC
1 CGAACTAGTCAAACATTAACGAGTTCTATTATAACTTCAGTCCCATAAAGTATTCAAGGCGATAC
* *
20304887 ATTCCTTCGAGCAATTAGTGGAACATTCCAAGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
66 ATTCCTTCGAGCAATTAGTGGAACATTCCAAGCTCGGGAAATAGCAGCATTTGGTCTAAATAGTT
20304952 TGTCATATTCTTAGACAAACTTT
131 TGTCATATTCTTAGACAAACTTT
* * * *
20304975 CGAACTAGTCAAACTTTTACGAGTTCT-TTCATAACTTCGGTCCCTTAAAGTATTC-AGGACGAT
1 CGAACTAGTCAAACATTAACGAGTTCTATT-ATAACTTCAGTCCCATAAAGTATTCAAGG-CGAT
* * ** * * ** * * *
20305038 CCATTGCTTCGAGCAATTTTTTGAACATTCTATTCTCGGGAATTAGCAGCATTTTGTCTAAATCG
64 ACATTCCTTCGAGCAATTAGTGGAACATTCCAAGCTCGGGAAATAGCAGCATTTGGTCTAAATAG
20305103 TTTGTCA
129 TTTGTCA
20305110 ATTTGGAAAC
Statistics
Matches: 112, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
152 5 0.04
153 107 0.96
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (153 bp):
CGAACTAGTCAAACATTAACGAGTTCTATTATAACTTCAGTCCCATAAAGTATTCAAGGCGATAC
ATTCCTTCGAGCAATTAGTGGAACATTCCAAGCTCGGGAAATAGCAGCATTTGGTCTAAATAGTT
TGTCATATTCTTAGACAAACTTT
Found at i:20305517 original size:192 final size:190
Alignment explanation
Indices: 20305142--20305521 Score: 444
Period size: 192 Copynumber: 2.0 Consensus size: 190
20305132 TTGAATCAAA
* * * *
20305142 AACTTATTTACGTGAGAATTATTTCTCTCGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTA
1 AACTTATTTACATGAGAATTATTTCTCTCGTTCTTGGAAGAACTTCCAAACTTGTCAAACTTTTA
* * * *
20305207 CGAGTTCTTTTATAACTTCGGTTCCTTATAGTATTGAAGACGATACATTCCTTCCAGCAACTTTC
66 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCAAGCAAATTTC
** * **
20305272 TAAACATTTTATGCTCGAAAAATCGCATCATTTTTCTAAATTGTTTGTCATTTTGTAAAT
131 TAAACATTCCATGCTCGAAAAATCGCATCATTTGTCTAAATAATTTGTCATTTTGTAAAT
* * *
20305332 AACTTATTT-CATGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAGCTTCCAAACCTT-TCAAGCT
1 AACTTATTTACATGAGAATTATTTCTCTC---GTTCTTGGAAGAACTTCCAAA-CTTGTCAAACT
* ** * *
20305395 TTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCATTACGATCCATTCCTTTAAGCAAA
62 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCAAGCAAA
* * * * *
20305460 TTT-TGAACATTCCATTCTCGAGAAATCGCATCGTTTAGTGTAAATAATTCT-TCATTTTGTAA
127 TTTCTAAACATTCCATGCTCGAAAAATCGCATCATTT-GTCTAAATAATT-TGTCATTTTGTAA
20305522 GCAAGTTTTG
Statistics
Matches: 158, Mismatches: 26, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
189 17 0.11
190 9 0.06
191 27 0.17
192 101 0.64
193 4 0.03
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (190 bp):
AACTTATTTACATGAGAATTATTTCTCTCGTTCTTGGAAGAACTTCCAAACTTGTCAAACTTTTA
CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCAAGCAAATTTC
TAAACATTCCATGCTCGAAAAATCGCATCATTTGTCTAAATAATTTGTCATTTTGTAAAT
Found at i:20305899 original size:216 final size:215
Alignment explanation
Indices: 20305327--20314199 Score: 9563
Period size: 216 Copynumber: 41.5 Consensus size: 215
20305317 TGTCATTTTG
* * * * *
20305327 TAAATAACTTATTT-CATGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAGCTTCCAAACCTT-TC
1 TAAA-AACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAA-CTTGTC
* * ** **
20305390 AAGCTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCATTACGATCCATTCCTTTAA
64 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * * *
20305455 GCAAATTT-TGAACATTCCATTCTCGAGAAATCGCATCGTTTAGTGTAAATAATTCT-TCATTTT
129 GCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTT
*
20305518 GTAAGCAAGTTTTGGTCTTTAAAA
193 GTAA-CAAGTTTTGGTCTTTAAAT
** * *
20305542 CGAAAACTTATTTACGTGAGAATTGTTT-TC--TTGGCTGTTGGACGAACTTCCGAACTAT-TCA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACT-TGTCA
* * * * *
20305603 AACTTTTACGAGTTCTTTTATAACTT-GGGTCCTTACAGTATTCAAGACGATCCATTTCATCAAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
20305667 CAATTTT-TCGAACATTCCATGCTAGGGAAATTGCATCATTTGGTGTATATAGTTTGTCATTTTG
130 CAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * *
20305731 TAACGAACTTTTCGTCTTTGAAT
194 TAAC-AAGTTTTGGTCTTTAAAT
* * * * * *
20305754 TGAATACTTATTTACGTGAGAATTGCTTCTCTTTTGCTTCTTGGATGAACTCCCGAACTTGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * * * * *
20305819 ACTTTAACGAGTTCTATTATAATTTCAGTTCCCTGAAGTATTCAAGACGATACATTCCTTTGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
** * *
20305884 AATTTTCCAAACATTCCAAGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * ***
20305949 AAAAGGTTTTGTTGTTTGCCT
196 ACAA-GTTTTGGTCTTTAAAT
* * * * *
20305970 TAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTTCGAACTAGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20306035 ACTTCTACGGGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * *
20306100 AATTTTCTGAACATTCTATTCTCGGGAATTAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-GT
*
20306165 AACAAGTTTTGGTCTTTGAAT
195 AACAAGTTTTGGTCTTTAAAT
* * *
20306186 GAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAACTTCTGAACTAGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20306249 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGATGATACATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * ** * *
20306314 AACTTTCTAAACATTCTATGCTTGAAAAATCACATCATTT-TTCTAAATTA-TTTGTCATTTTGT
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTTGT
20306377 AAACAAGTTTTGGTCTTTAAAT
195 -AACAAGTTTTGGTCTTTAAAT
* * * * *
20306399 TAAAAACTTATTTTCGTGAGAATTTTTTCTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTC
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCT-T-TTGGTTCTTGGACGAACTTCCGAACTTGTC
* **
20306464 AAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTTA
64 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * *
20306529 GCAATTTT-TGAACATTCCAAT-TTCGGAAAATTGCATCATTTAGTCTAAATAGTTTTTCATTTT
129 GCAATTTTCTGAACATTCC-ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
20306592 GTAAACAAGTTTTGGTCTTTAAAA
193 GT-AACAAGTTTTGGTCTTTAAAT
* * * * * * * *
20306616 CAAAAACTTATTTACGTGAGAATTGTTTCTC--TTAGCTGTTAGACGAACTTGCAAACTTTTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * * * *
20306679 ACTTTTACGAGTTCTTTTATAACTT-GGATCATTACAGT-TTCCAAAATGATCCATTCCATCAAG
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-CAAGACGATCCATTCCTTCGAG
* * *
20306742 AAATTTTC-CATAC-TTCCATGCTCGGGAAATGGCATCATTTGGTCTAAATAGTTTGTCATTTTG
130 CAATTTTCTGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
**
20306805 TAA-ACAGCTTTTGGTCTTTGCAT
194 TAACA-AG-TTTTGGTCTTTAAAT
* * *
20306828 TAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGATGAACTTTCGAACTTGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * * * * *
20306893 ACTTTTATGAGTTGTTTTCTAATTTCAGTTTCATAAAGTATTCAAGACGATTCATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* ** * *
20306958 AATTTTTTGAACAGTT-CATGCTCAAGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTCT
131 AATTTTCTGAACA-TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
20307022 AA-AACGGTTTTGTTGTTTAAAT
195 AACAA--GTTTTGGTCTTTAAAT
* * * * ** * *
20307044 TAAAAACTTATTTACGTGAGTATTGCTTCTCTCTTGCTTCTTGGAC-ATACTTTTGAACTAGTTA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGA-ACTTCCGAACTTGTCA
* * * * *
20307108 AACTTTTATGGGTTCTTTCATAACTTCGGTTCCTTAAAGTTTTCATGACGATCCATTCCTTCGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * *
20307173 CAAGTTTT-TCAACATTCTATTCTCGAGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTG
130 CAA-TTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-
* * * * *
20307237 GAAAAAAGTTTTGGTGTTTGACT
193 GTAACAAGTTTTGGTCTTTAAAT
* * * * *
20307260 CAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTAGATGAACTTTCGAACTTCTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20307323 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATTGCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * *** ** *
20307388 AACTTTCTAAACTTTCTATGCTCAAAAAATCGCAAAATTT-TTCTAAATAGTTTGTCATTTTGTA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-
20307452 AACAAGTTTTGGTCTTTAAAT
195 AACAAGTTTTGGTCTTTAAAT
* * * * *
20307473 T-AAAACTTATTTACGTGAAAATTGTTTCTCTCTCTTGGTTATTGGAAGAACTTCCAAACTTTTC
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCT-T-TTGGTTCTTGGACGAACTTCCGAACTTGTC
* **
20307537 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCATAAAGTATTCAAGACGATCCATTCCTTTAA
64 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* ** * *
20307602 GC-ATTTT-TGAACATCCCATTATCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTG
129 GCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* *
20307665 TAAGCAAGTTTCGGTCTTTAAAA
194 TAA-CAAGTTTTGGTCTTTAAAT
** * *** * *
20307688 CGAAAACTTATTTACATGAGAATTGTTTCTC-TTT-GCAGTTGGACGAACTTTC-AAGCTTTTCA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAA-CTTGTCA
* * * * * *
20307750 AACTTTTTCGAGTTCTTTTATAACTT-GGATCCTTATAGTATTCAAGACGGTCCATTCCATCAAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
20307814 CAATTTTTTCAACATTCCATGCTCGAGAAATCACATCATTTGGTCTATATAGTTTGTCATTTTGT
130 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * *
20307879 AAAAAGGTTTTGTTGTTTGAAC
195 AACAA-GTTTTGGTCTTTAAAT
* * * * * *
20307901 TAAAAACTTATTTACGTGAGTATT-TTTCTCTCTTGCTTCTTGGATGAACTTTCGAACTAGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * * *
20307965 ACTTTAACGATTTCTTTCATAACTTCGATTCCTTACAGTATTCAAGACGATCCATTCCTTTGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * ** ** * * *
20308030 AATTTTCTGAACATTCTATTCTCCAGAAAAAGCAACATTTGGTCTTAATAGTTTGTCATTTTGGA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-GT
* *
20308095 AACAAGTTTTGGTGTTT-GAT
195 AACAAGTTTTGGTCTTTAAAT
* * * *
20308115 TCAAAAACTTTTTTACGTTAGAATTGTTTCTC--TTGGTTCTTGGACAAACTTTCGAACTTGTCA
1 T-AAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* *
20308178 AACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTACAA-TATTCAAGACGATACATTCCTTCGA
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGA
* * * *** * * *
20308242 GCAACTTTCTAAACATTCTATGCTCAAAAAATCTCATCATTT-TTCTAAATTGTTTGTCATTTTG
129 GCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
20308306 TAAACAAGTTTTGGTCTTTAAAT
194 T-AACAAGTTTTGGTCTTTAAAT
* * * * * * *
20308329 TAAAAACTTATTTAGGTGTGAATTGTTTCTCTCTTGGTTCTTGGAAGAGCTTCCAAAGGTT-TCA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAA-CTTGTCA
** * ** **
20308393 AACTTTTTTGAGTTCTTTTATAACTTCAGTTAGTTAAAGTATTCAAGACGATCCATTCCTTTAAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
20308458 CAATTTT-TGAACATTCCATTCTCGAGAAATCGCATCATTTAGTCTAAAAAGTTTTTCATTTTGT
130 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
20308522 AAACAAATTTTGGTCTTTAAAA
195 -AACAAGTTTTGGTCTTTAAAT
** * * * *
20308544 CGAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGCTGTTGGACGAACTTCCAAACTTTTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
20308607 ACTTTTACGAGTTCTTTTATAACTT-GGATCCTTACAGTATTCAAGACGATCCATTCCATCAAG-
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
*
20308670 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTCGTCTAAATAGTTTGTCATTTTGTA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-
* *
20308735 AACAACTTTTGGTCTTTGAAT
195 AACAAGTTTTGGTCTTTAAAT
* * * *
20308756 TAAATACTTATTTACAT-AGGAATTGTTTCTCTTTTGGTTCTTGGATGAACTCCCGAACTTGTCA
1 TAAAAACTTATTTACGTGA-GAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * *
20308820 AACTTTT---AGTTCTTTTATTATTTCAGTTTCATAAAGTATTCAAGACGATCCATTCCTTCGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* **
20308882 CAATTTT-TCGAACATTCCTTGCTCGGGAAATCGCATCATTTATTCTAAATAGTTTGTCATTTTG
130 CAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
20308946 TAAAAAGGTTCTGTTCTTTGAAT
194 TAACAA-GTTTTGGTCTTTAAAT
* * * * ** * *
20308969 TAAAAACTTATTTACGTGAGTATTGTATCTCTCTTGCTTCTTGGACGAACTTTTGAAATAGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* *
20309034 ACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTTTTCAAGACGATCCATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * ** ** * *
20309099 AATTTTCTGAACATTCTATTCTCCAGAAATAACAGCATTTGGTCTAAATAGTTTGTCATTTTGGA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-GT
*
20309164 AACAAGTTTTGGTCTTT-GAT
195 AACAAGTTTTGGTCTTTAAAT
* *
20309184 TCAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACAAACTTCCGAACTTGTGA
1 T-AAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * *
20309247 AACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTACAGTATTCAAGACAATACATTCCTTCGGG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * ** * *
20309312 CAACTTTCTAAACATTCTATGCTCGAAAAATCGCATCATTT-TTCGAAATAGTTTGTCATTTTGT
130 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
20309376 AAACAAGTTTTGGTCTTTAAAT
195 -AACAAGTTTTGGTCTTTAAAT
* * * * *
20309398 T-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCGTGGAAGAACTTCCAAACTTTTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * **
20309462 ACTTTTACGAGTTATTTTATAACTTCGGTTCCTTAAAGTATTCGAGACGATCCATTCCTTTAAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * ** * * *
20309527 AATTTTTTTAACATTCCATTATCGGGAAGTCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-
** *
20309592 AACAAGTTTCAGTCTTTAAAA
195 AACAAGTTTTGGTCTTTAAAT
** * * * * * *
20309613 CGAAAACTTATTTACATGAGAATTGTTTCTC-TTT-GCTGTTGGATGAACTTCCAAACTTTTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * *
20309676 ACTTTTACGAGCTCTTTTATAACTT-GGATCCGTACAGTATTCAAGATGATCCATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
** * *
20309740 TGTTTTTTGAATATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-
* *
20309805 AACAACTTTTGGTCTTTGAAT
195 AACAAGTTTTGGTCTTTAAAT
* * * * * * * *
20309826 T-AAATCTTATTTATGTGAGAATTATTTTTCTTTTGGTTCTTGGATGAGCTTTCAAACTTGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * ** * * *
20309890 ACTTTTACGAGTTCTTTGATAATTTTAGTTCCATAAAGTTTTCAAGACGATCCATTCCTTTGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* *
20309955 AATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTATATAGTTTGTCATTTTGTA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * *
20310020 AAAAGATTTTGTTGTTTGAAT
196 ACAAG-TTTTGGTCTTTAAAT
* * * * * *
20310041 TAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGCTTCTTGGATGAACTTTCGAACTAGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * *
20310106 ACTTTTACGAGTTCTTTTATAATTTCGATTCCTTACAGCATTCAAGACGATACATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * ** ** *
20310171 AACTTTCTAAACATTATATGCTCGAAAAATCGCATCATTT-TTCTAAATAGTTTGTCATTTTGTA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-
20310235 AACAAGTTTTGGTCTTTAAAT
195 AACAAGTTTTGGTCTTTAAAT
* * * *
20310256 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTGGTTCTTAGAAGAACTTCCAAACTTTTC
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCT-T-TTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * * **
20310321 AAACTATTACTAATTCTTTTATAACTTCGGTTCCTTAAAGTATTCAGGACGATCCATCCCTTTAA
64 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * *
20310386 GCAATTTT-TGAACATTCCATTCTCGGGAAATCACATCATTTAGTCTAAATAGTTTTTCATTTTG
129 GCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* *
20310450 TAACCAAGTTTCGGTCTTTAAAA
194 TAA-CAAGTTTTGGTCTTTAAAT
* * * * * * *
20310473 TGAAAACTTATTTACGTGAGAATTGTTTATC--TTGGCTGTTGGATGAACTTCCGAACTTTTGAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20310536 ACTATTACGAGTTCTATTATAACTT-GGTTCCTTACAA-TATTCAAGATGATCCATTCCTTCGAG
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAG
* * *
20310599 CTATTTTCTGAACATTCAATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
130 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
20310664 AACCAACTTTTGTTCTTTGAAT
195 AA-CAAGTTTTGGTCTTTAAAT
* * * *
20310686 TAAATACTTATTTACGTGAGAATTGTTTCTCTGTTGGTTCTTGGACGAACTTTCGAACTAGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * * *
20310751 AATTTTACGAGCTCTTTCATGACTTCAGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* ** * * * *
20310816 AATTTTCTGAACATTCTATTTTCGGGAATTAGCAACATTTGGTCTAAATAGTTTGTCATTTTGGA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-GT
**
20310881 AACAAGTTTTGGTCTTTGGAT
195 AACAAGTTTTGGTCTTTAAAT
* * * * * *
20310902 CAGAAATTTATTTACATGAGAAATG-TT-TC--TTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* *
20310963 ACTTTTACGAGTTC-TTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * *** * * * *
20311027 AACTTTCTAAACATTCCATGCTCAAAAAATTGCATCATTT-TTCTAAATTGTTAGTCATTTTGTC
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-
*
20311091 AACAAGTTTTGGTATTTAAAT
195 AACAAGTTTTGGTCTTTAAAT
* * * ** *
20311112 TAAAAACTTATTTACATGAGAAGTATTTCTCTCTCTTGGTTCTTGGACGAACTTCAAAACTTTTC
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCT-T-TTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
20311177 AAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGA
64 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * *
20311242 GCAATATT-TGAACATTCCATTCTCGAGAAATCGCATTATTTAGTCTAAATAGTTT-TCATTTTG
129 GCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* *
20311305 TAAACAAGTTTTAGTCTTTAAAA
194 T-AACAAGTTTTGGTCTTTAAAT
* * * * * *
20311328 TGAAAACTTATTTAAGTGAGAATTGTTTCTC--TTGGCTGTTGGACGAACTTCTGAACTTTTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * *
20311391 ACTTTTACCAGTTCTTTTATAACTT-GGTTCCTTATAGTATTCAAGATGATCCATTCATTCTAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * *
20311455 TATTTT-TCAAACATTCCGTGCTCGGTAAA-CAGCATCATTTGGTCTAAATAGTTTGGT-ATTTT
131 AATTTTCT-GAACATTCCATGCTCGGGAAATC-GCATCATTTGGTCTAAATAGTTT-GTCATTTT
* * * *
20311517 GTAAAAAGGTTTTGTTATTTCAAT
193 GTAACAA-GTTTTGGTCTTTAAAT
* * * * * **
20311541 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGAACAAACTTTCGAACAAGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
20311606 ACTTTTACGAGTTCTTTCAT-ATTTCGGTTCCTTAAAGTATTCAAGTCGATCCATTCCTTCGAGT
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * * * *
20311670 AATTTTCTAAACATTCTATTCTCGGAAAATAGCAGCATTTGGTCTAAAAAGTTTGTAATTTTGGA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-GT
*
20311735 AACAAGTTTTGGTATTTAAAT
195 AACAAGTTTTGGTCTTTAAAT
* * ** * *
20311756 AAAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGATGAACTTTTGAACTAGTCT
1 -TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* *
20311819 AACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* ** * * * * * *
20311884 TAATTTTCTGAACATTCTTTTCTTGGGAATTAGTAGCATTTGGTCTAAATAGTTTGTCATTTTGG
130 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-G
* *
20311949 AAACAAGTTTTGGTCTTTGAAT
194 TAACAAGTTTTGGTCTTTAAAT
* * * * * * * *
20311971 CAAGAACATATTTACGTGAGAATTATTTCTC--TTGGTTCTTTGACAAACTTTCGAACTAGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20312034 ACTTTTACAAGTTCTTTTATAACTTCGGTTCC-TACAGTATTCAAGACGATACATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * ** *** * * ** *
20312098 AACTTTCTAAACATTTTATGCTCAAAAAATTGCATCATTT-TTCTAAATTTTTTGTGATTTTGTA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-
20312162 AACAAGTTTTGGTCTTTAAAT
195 AACAAGTTTTGGTCTTTAAAT
* * * *
20312183 TAAAAACTTCTTTACGTGAGAATTGTTTCTCACTCTTGGTTCTTGGACGAACTTCCAAACTTTTC
1 TAAAAACTTATTTACGTGAGAATTGTTTCT--CTTTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
20312248 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTTGA
64 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * *
20312313 GCAATTTT-TGAACATTCCATTG-TCGGGAAATCGCATCGTTTAGTCTAAATAGTTTTTCATTTT
129 GCAATTTTCTGAACATTCCA-TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
20312376 GTAACCAAGTTTTGGTCTTTAAAA
193 GTAA-CAAGTTTTGGTCTTTAAAT
** * * * * *
20312400 CGAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGCTGTTGGACAAACTTCTGAACTTTTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
** *
20312463 ACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTCCAGTATTTAAGACGATCCATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
*
20312527 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCACTTTGTA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-
* *
20312592 AACAACTTTTGGTCTTTGAAT
195 AACAAGTTTTGGTCTTTAAAT
* * * *
20312613 TAAATACTTATTTATGTGAGAATTGTTTCTCTTTTAGTTCTTGGACTAACTTCCGAACTTGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* ** *
20312678 ACTTTTACGAGTTCTTTTATAATTTTAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * *** * * * *
20312743 AATTTTTTAAACATTATTTGGTC--TAAAT---A--GTTT--T-T---TA-TTT-T-A---T-AA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * *
20312788 AAAGGTTTTGTTGTTTGAAT
196 ACAAGTTTTGGTCTTTAAAT
* * * ** *
20312808 TAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACCAACTTTTGAACTTGCCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20312873 ACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * *
20312938 AATTTTCTGAACATTCTATTCTCGGGAAATAGCAGT-ATTTGGTCTAAATAGATTGTCATTTTGG
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTT-G
* * *
20313002 AAACAAGTTTTGATCTTTGAAT
194 TAACAAGTTTTGGTCTTTAAAT
* *
20313024 CAAAAACTTATTTACGTG-GTAATTTTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCA
1 TAAAAACTTATTTACGTGAG-AATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * ** * *
20313088 AAC-TTTACGAGTTCTTTTAGAATTTTAGTTCCATAAAGTATTCAAGACGATCCATTCCTTTGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
20313152 CAATTTTTTGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTAT
130 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
20313217 AAAAAGGTTTTGTTGTTTGAAT
195 AACAA-GTTTTGGTCTTTAAAT
* * ** *
20313239 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACCAACTTTTGAACTTGCCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
20313304 ACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * *
20313369 AATTTTCTGAACATTCTATTCTCGGGAAATAGCAGT-ATTTGGTCTAAATAGTTTGTCATTTTGG
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTT-G
* * *
20313433 AAACAAGTTTTGATCTTTGAAT
194 TAACAAGTTTTGGTCTTTAAAT
*
20313455 CAAAAACTTATTTACGTG-GTAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCA
1 TAAAAACTTATTTACGTGAG-AATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * ** * *
20313519 AACTTTTACGAGTTCTTTTAGAATTTTAGTTCCATAAAGTATTCAAGACGATCCATTCCTTTGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
20313584 CAATTTTTTGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTAT
130 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
20313649 AAAAAGGTTTTGTTGTTTGAAT
195 AACAA-GTTTTGGTCTTTAAAT
* * ** *
20313671 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACCAACTTTTGAACTTGCCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* *
20313736 ACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * *
20313801 AATTTTCTGAACATTCTATTCTCGGGAAATAGCAGT-ATTTGGTCTAAATAGTTTGTCATTTTGG
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCA-TCATTTGGTCTAAATAGTTTGTCATTTT-G
* * *
20313865 AAACAAGTTTTGATCTTTGAAT
194 TAACAAGTTTTGGTCTTTAAAT
* * **
20313887 CAAAAACTTATTTACGTGATAATTGTTTCTC--TTGGTTCTTGGACGAACTTTTGAACTTGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * **
20313950 ACTTTTACGTGTTCTTTTATAACTTCGGTTCCTTACATTATTCAAGATGATATATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * ** * * *
20314015 AACTTTCTAAACATTCTATGCTCGAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTATA
131 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-
*
20314079 AACAAGTTTTGGCCTTTAAAT
195 AACAAGTTTTGGTCTTTAAAT
* * *
20314100 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTGGTTCATGGATGAACTTCC-AATCTTTT
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCT-T-TTGGTTCTTGGACGAACTTCCGAA-CTTGT
20314164 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
63 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
20314200 GATACGGCCA
Statistics
Matches: 7283, Mismatches: 1186, Indels: 376
0.82 0.13 0.04
Matches are distributed among these distances:
195 149 0.02
197 5 0.00
200 2 0.00
201 1 0.00
202 6 0.00
203 2 0.00
204 1 0.00
205 1 0.00
206 1 0.00
207 1 0.00
208 2 0.00
209 6 0.00
210 58 0.01
211 224 0.03
212 837 0.11
213 1085 0.15
214 1127 0.15
215 1159 0.16
216 2056 0.28
217 558 0.08
218 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
TAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
ACAAGTTTTGGTCTTTAAAT
Found at i:20314701 original size:32 final size:32
Alignment explanation
Indices: 20314665--20314727 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
20314655 AGCCGAAATT
*
20314665 AATTAGCTAATTAATATGTTTCAGGTACATGC
1 AATTAGCTAATTAATATATTTCAGGTACATGC
*
20314697 AATTAGCTGATTAATATATTTCAGGTACATG
1 AATTAGCTAATTAATATATTTCAGGTACATG
20314728 TATGGATGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (32 bp):
AATTAGCTAATTAATATATTTCAGGTACATGC
Found at i:20316189 original size:216 final size:214
Alignment explanation
Indices: 20315683--20316214 Score: 662
Period size: 216 Copynumber: 2.5 Consensus size: 214
20315673 CAAGATCGTA
* * * * * * *
20315683 TCAGTTCCTTAATGTATTAAAGACGATCCATTCCTTTGAGCAATTTT-TGAACATTCCGTTCTTG
1 TCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCG
* * * * *
20315747 AG-AATCGCATCATTTAGTCTAAATATTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACGA
66 AGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAACAACTTTTAGTCTTTAAAACGA
* ** *
20315811 AAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGATGAACTTCCAAACTTTTCAAACTTT
131 AAACTTATTTACGTGAGAATTGTTTCTCTTGGCTCTTGGACAAACTTCCAAACTTGTCAAACTTT
*
20315876 TACGAGTTCTTTTTTAACT
196 TACGAGTTCTTTTATAACT
* * * *
20315895 T-GGTTCCTTATAGTATTCAAGACGATCCATTCCTTCAAGCTATTTTCTAAACATTCCATGCTCG
1 TCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCG
* * * * * **
20315959 GGAAATCACATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAACTTTTAGTCTTT-GAATTA
66 AGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAACAACTTTTAGTCTTTAAAACGA
* * *
20316023 AATACTTATTTACGTGAGGATTGTTTCTCTTTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAC
131 AA-ACTTATTTACGTGAGAATTGTTTCTC--TTGGCTCTTGGACAAACTTCCAAACTTGTCAAAC
*
20316088 TTTTACGAGTTCTTTTATAATT
193 TTTTACGAGTTCTTTTATAACT
* * *
20316110 TCAGTTCCATAAAGTATTCAAGACGATGCATTCCTTCGAGCAATTTTCCT-AGCATTCCATGCTC
1 TCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-CTAAACATTCCATGCTC
20316174 GAGAAAAT-GCATCATTTGGTCTAAATAGTTTATCATTTTGT
65 GAG-AAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGT
20316215 CTTGGGGTTT
Statistics
Matches: 270, Mismatches: 42, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
211 38 0.14
212 20 0.07
213 73 0.27
215 49 0.18
216 84 0.31
217 6 0.02
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (214 bp):
TCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCG
AGAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAACAACTTTTAGTCTTTAAAACGA
AAACTTATTTACGTGAGAATTGTTTCTCTTGGCTCTTGGACAAACTTCCAAACTTGTCAAACTTT
TACGAGTTCTTTTATAACT
Done.