Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 7 of 135
Found at i:2108429 original size:13 final size:13
Alignment explanation
Indices: 2108411--2108441 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
2108401 TGAACCTTCC
2108411 TTTTATATATAAT
1 TTTTATATATAAT
2108424 TTTTATATATAAT
1 TTTTATATATAAT
2108437 TTTTA
1 TTTTA
2108442 GATTTTGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TTTTATATATAAT
Found at i:2113230 original size:96 final size:96
Alignment explanation
Indices: 2113053--2113237 Score: 230
Period size: 96 Copynumber: 1.9 Consensus size: 96
2113043 GAAAAGGATG
* ** * **
2113053 TTCGATTATCTCGATTTGAAGAAAGGTCGCACCTAGTAAGTTAAGGCGTAAATTTTCAAAATCAA
1 TTCGACTATCTCGATTTGAAGAAAAATCGCACCTAATAAGTTAAGGCACAAATTTTCAAAATCAA
*
2113118 AGATAAGGAAACATTGCCTCGATTAAGGGTA
66 AGATAAAGAAACATTGCCTCGATTAAGGGTA
* * * *
2113149 TTCGACTATTTCGATTTGAAGAAAAATTGCACCTAATAAGTTAAGGCACAAATTTTCGAAACTCG
1 TTCGACTATCTCGATTTGAAGAAAAATCGCACCTAATAAGTTAAGGCACAAATTTTC-AAAATCA
*
2113214 AA-ATAAA-AGAATATTGCCTCGATT
65 AAGATAAAGA-AACATTGCCTCGATT
2113238 TTAAAGTTTT
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
95 1 0.01
96 67 0.89
97 7 0.09
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (96 bp):
TTCGACTATCTCGATTTGAAGAAAAATCGCACCTAATAAGTTAAGGCACAAATTTTCAAAATCAA
AGATAAAGAAACATTGCCTCGATTAAGGGTA
Found at i:2113509 original size:28 final size:29
Alignment explanation
Indices: 2113454--2113516 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
2113444 AAATGAGACT
*
2113454 TTTTGGATACTCGAGGGGCAAAATGGTAA
1 TTTTGGATACTCGAGGAGCAAAATGGTAA
2113483 TTTTGGACT-CTCG-GGAGCAAAATGGTAA
1 TTTTGGA-TACTCGAGGAGCAAAATGGTAA
2113511 TTTTGG
1 TTTTGG
2113517 GAAATTTTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 20 0.62
29 11 0.34
30 1 0.03
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (29 bp):
TTTTGGATACTCGAGGAGCAAAATGGTAA
Found at i:2113622 original size:117 final size:115
Alignment explanation
Indices: 2113501--2113777 Score: 274
Period size: 117 Copynumber: 2.4 Consensus size: 115
2113491 TCTCGGGAGC
* * *
2113501 AAAATGGTAATTTTGGGAAATTTTGGGGTTAAAAATGAAATTTTAGATATTTGAGGGTAAAACGG
1 AAAATGGTAATTTT-GGAAATTTTGGGGTTAAAAATGAAATTTTAGACATTCGAGGGTAAAACGA
*
2113566 TAATTTTTAGAAA-AATCGAGATCAAAAACT-AAATTTTTGGACA-TTAAGGGGT
65 TAA-TTTTAGAAAGAATCGAGATCAAAAA-TGAAA-CTTTGGA-AGTTAAGGGGT
* * ** * *
2113618 AAAATGGTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAGTTTTTGGACATTCGAGGGTAAAATG
1 AAAATGGTAATTTTGGAAA-TTTTGGGGTTAAAAAT-GAAATTTTAGACATTCGAGGGTAAAACG
** * * **
2113683 ATAATTTTAGAAAGTTTCGAGGTCAAAAATGGAACTTTGGAAGTTCGGGGGT
64 ATAATTTTAGAAAGAATCGAGATCAAAAATGAAACTTTGGAAGTTAAGGGGT
* * * *
2113735 AAAATAGTAATTTTTGGAAGTTTCGGGGTT-AAAATGGAATTTT
1 AAAATGGTAA-TTTTGGAAATTTTGGGGTTAAAAATGAAATTTT
2113778 TGGAAGTTCG
Statistics
Matches: 130, Mismatches: 24, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
115 5 0.04
116 10 0.08
117 69 0.53
118 46 0.35
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (115 bp):
AAAATGGTAATTTTGGAAATTTTGGGGTTAAAAATGAAATTTTAGACATTCGAGGGTAAAACGAT
AATTTTAGAAAGAATCGAGATCAAAAATGAAACTTTGGAAGTTAAGGGGT
Found at i:2113629 original size:29 final size:28
Alignment explanation
Indices: 2113597--2113690 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 28
2113587 TCAAAAACTA
2113597 AATTTTTGGACATTAAGGGGTAAAATGGT
1 AATTTTTGGACATT-AGGGGTAAAATGGT
* *
2113626 AATTTTT-GAAAGTTTTGGGGTCAAAAATGG-
1 AATTTTTGGACA--TTAGGGGT--AAAATGGT
* * *
2113656 AGTTTTTGGACATTCGAGGGTAAAATGAT
1 AATTTTTGGACATTAG-GGGTAAAATGGT
2113685 AATTTT
1 AATTTT
2113691 AGAAAGTTTC
Statistics
Matches: 51, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
28 9 0.18
29 20 0.39
30 12 0.24
31 10 0.20
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (28 bp):
AATTTTTGGACATTAGGGGTAAAATGGT
Found at i:2113650 original size:59 final size:58
Alignment explanation
Indices: 2113501--2113838 Score: 228
Period size: 58 Copynumber: 5.8 Consensus size: 58
2113491 TCTCGGGAGC
* * * * * *
2113501 AAAATGGTAATTTTGGGAAA-TTTTGGGGTTAAAAATGAAATTTTAGATATTTGAGGGT
1 AAAATGGTAATTTT-TGAAAGTTTCGGGGTCAAAAATGAAATTTTGGACATTAGAGGGT
* ** * *
2113559 AAAACGGTAATTTTTAGAAA-AATCGAGATCAAAAACT-AAATTTTTGGACATTA-AGGGGT
1 AAAATGGTAATTTTT-GAAAGTTTCGGGGTCAAAAA-TGAAA-TTTTGGACATTAGA-GGGT
* ** *
2113618 AAAATGGTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAGTTTTTGGACATTCGAGGGT
1 AAAATGGTAATTTTTGAAAGTTTCGGGGTCAAAAAT-GAAATTTTGGACATTAGAGGGT
* * * * * * *
2113677 AAAATGATAATTTTAGAAAGTTTCGAGGTCAAAAATGGAACTTTGGA-AGTTCGGGGGT
1 AAAATGGTAATTTTTGAAAGTTTCGGGGTCAAAAATGAAATTTTGGACA-TTAGAGGGT
* * * * * *
2113735 AAAATAGTAATTTTTGGAAGTTTCGGGGT-TAAAATGGAATTTTTGGA-AGTTCGAGAGT
1 AAAATGGTAATTTTTGAAAGTTTCGGGGTCAAAAAT-GAAATTTTGGACA-TTAGAGGGT
* * *
2113793 AAAAT-GTAA-TTTTGGAAGTTTTCGAGGTCAAAATAT-AATTTTTGGA
1 AAAATGGTAATTTTTGAAAG-TTTCGGGGTCAAAA-ATGAAATTTTGGA
2113839 TAGTTTAGGG
Statistics
Matches: 225, Mismatches: 42, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
56 9 0.04
57 28 0.12
58 99 0.44
59 87 0.39
60 2 0.01
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (58 bp):
AAAATGGTAATTTTTGAAAGTTTCGGGGTCAAAAATGAAATTTTGGACATTAGAGGGT
Found at i:2113750 original size:29 final size:28
Alignment explanation
Indices: 2113613--2113843 Score: 148
Period size: 29 Copynumber: 7.9 Consensus size: 28
2113603 TGGACATTAA
* **
2113613 GGGGTAAAATGGTAATTTTTGAAAGTTTT
1 GGGGTAAAAT-GTAATTTTTGGAAGTTCG
* *
2113642 GGGGTCAAAAATGGAGTTTTTGGACA-TTCG
1 GGGGT--AAAATGTAATTTTTGGA-AGTTCG
* * *
2113672 AGGGTAAAATGATAATTTTAGAAAGTTTC-
1 GGGGTAAAATG-TAATTTTTGGAAG-TTCG
* * *
2113701 GAGGTCAAAAATGGAA-CTTTGGAAGTTCG
1 GGGGT--AAAATGTAATTTTTGGAAGTTCG
2113730 GGGGTAAAATAGTAATTTTTGGAAGTTTCG
1 GGGGTAAAAT-GTAATTTTTGGAAG-TTCG
* *
2113760 GGGTTAAAATGGAATTTTTGGAAGTTCG
1 GGGGTAAAATGTAATTTTTGGAAGTTCG
* *
2113788 AGAGTAAAATGTAA-TTTTGGAAGTTTTC-
1 GGGGTAAAATGTAATTTTTGGAAG--TTCG
* *
2113816 GAGGTCAAAATATAATTTTTGGATAGTT
1 GGGGT-AAAATGTAATTTTTGGA-AGTT
2113844 TAGGGACCTC
Statistics
Matches: 156, Mismatches: 29, Indels: 34
0.71 0.13 0.16
Matches are distributed among these distances:
27 14 0.09
28 29 0.19
29 59 0.38
30 40 0.26
31 14 0.09
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.35
Consensus pattern (28 bp):
GGGGTAAAATGTAATTTTTGGAAGTTCG
Found at i:2113756 original size:58 final size:57
Alignment explanation
Indices: 2113614--2113825 Score: 241
Period size: 58 Copynumber: 3.6 Consensus size: 57
2113604 GGACATTAAG
* * *
2113614 GGGTAAAATGGTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAGTTTTTGGACA-TTCGA
1 GGGTAAAAT-GTAATTTTTGAAAGTTTCGAGGTCAAAAATGGA-ATTTTGGA-AGTTCGA
* * *
2113673 GGGTAAAATGATAATTTTAGAAAGTTTCGAGGTCAAAAATGGAACTTTGGAAGTTCGG
1 GGGTAAAATG-TAATTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTGGAAGTTCGA
* * *
2113731 GGGTAAAATAGTAATTTTTGGAAGTTTCGGGGT-TAAAATGGAATTTTTGGAAGTTCGA
1 GGGTAAAAT-GTAATTTTTGAAAGTTTCGAGGTCAAAAATGGAA-TTTTGGAAGTTCGA
* *
2113789 GAGTAAAATGTAA-TTTTGGAAGTTTTCGAGGTCAAAA
1 GGGTAAAATGTAATTTTTGAAAG-TTTCGAGGTCAAAA
2113826 TATAATTTTT
Statistics
Matches: 132, Mismatches: 15, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
56 9 0.07
57 22 0.17
58 62 0.47
59 39 0.30
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (57 bp):
GGGTAAAATGTAATTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTGGAAGTTCGA
Found at i:2114871 original size:3 final size:3
Alignment explanation
Indices: 2114865--2114916 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
2114855 TTATTAATGT
2114865 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
2114913 TTA T
1 TTA T
2114917 AACTGAAGAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:2115599 original size:6 final size:6
Alignment explanation
Indices: 2115588--2115653 Score: 59
Period size: 6 Copynumber: 11.5 Consensus size: 6
2115578 ATTTAAATAG
* *
2115588 ATTTAA ATTTAA ATTTATA A--TAA ATTTAA ATTTTA A-GTAA ATTTAA
1 ATTTAA ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
* *
2115634 ACTTAA A-ATAA ATTTAA ATT
1 ATTTAA ATTTAA ATTTAA ATT
2115654 CTGTTGGATC
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
4 2 0.04
5 9 0.19
6 35 0.73
7 2 0.04
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (6 bp):
ATTTAA
Found at i:2115613 original size:17 final size:17
Alignment explanation
Indices: 2115591--2115653 Score: 92
Period size: 17 Copynumber: 3.7 Consensus size: 17
2115581 TAAATAGATT
2115591 TAAATTTAAATTTATAA
1 TAAATTTAAATTTATAA
2115608 TAAATTTAAATTT-TAA
1 TAAATTTAAATTTATAA
* *
2115624 GTAAATTTAAACTTAAAA
1 -TAAATTTAAATTTATAA
2115642 TAAATTTAAATT
1 TAAATTTAAATT
2115654 CTGTTGGATC
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
16 3 0.07
17 36 0.88
18 2 0.05
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (17 bp):
TAAATTTAAATTTATAA
Found at i:2115614 original size:23 final size:22
Alignment explanation
Indices: 2115577--2115620 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
2115567 ATTGGACATT
*
2115577 AATTTAAATAGATTTAAATTTA
1 AATTTAAATAAATTTAAATTTA
2115599 AATTTATAATAAATTTAAATTT
1 AATTTA-AATAAATTTAAATTT
2115621 TAAGTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
AATTTAAATAAATTTAAATTTA
Found at i:2118683 original size:13 final size:13
Alignment explanation
Indices: 2118665--2118709 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
2118655 CTTAAATCAA
2118665 ACTTTTCAAATGT
1 ACTTTTCAAATGT
2118678 ACTTTTCAAAAT-T
1 ACTTTTC-AAATGT
2118691 ACTTTTTCAAA-GT
1 AC-TTTTCAAATGT
2118704 ACTTTT
1 ACTTTT
2118710 TAAAAGCACT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
12 4 0.14
13 16 0.55
14 9 0.31
ACGTcount: A:0.31, C:0.16, G:0.04, T:0.49
Consensus pattern (13 bp):
ACTTTTCAAATGT
Found at i:2118710 original size:13 final size:13
Alignment explanation
Indices: 2118667--2118720 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
2118657 TAAATCAAAC
2118667 TTTTCAAATGTAC-
1 TTTTCAAA-GTACT
*
2118680 TTTTCAAAATTACT
1 TTTTC-AAAGTACT
2118694 TTTTCAAAGTACT
1 TTTTCAAAGTACT
* *
2118707 TTTTAAAAGCACT
1 TTTTCAAAGTACT
2118720 T
1 T
2118721 CTCAAAAGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
13 27 0.77
14 8 0.23
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.46
Consensus pattern (13 bp):
TTTTCAAAGTACT
Found at i:2118720 original size:26 final size:27
Alignment explanation
Indices: 2118667--2118720 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
2118657 TAAATCAAAC
**
2118667 TTTTCAAATGTACTTTTCAAAATTACT
1 TTTTCAAATGTACTTTTCAAAAGCACT
*
2118694 TTTTCAAA-GTACTTTTTAAAAGCACT
1 TTTTCAAATGTACTTTTCAAAAGCACT
2118720 T
1 T
2118721 CTCAAAAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.46
Consensus pattern (27 bp):
TTTTCAAATGTACTTTTCAAAAGCACT
Found at i:2124692 original size:24 final size:24
Alignment explanation
Indices: 2124651--2124697 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
2124641 TCATGAATAA
2124651 GCTCATTTGAAAGCTCGTTTATTG
1 GCTCATTTGAAAGCTCGTTTATTG
*
2124675 GCTCATTT-ATAAGTTCGTTTATT
1 GCTCATTTGA-AAGCTCGTTTATT
2124698 TATTAATGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.47
Consensus pattern (24 bp):
GCTCATTTGAAAGCTCGTTTATTG
Found at i:2124829 original size:23 final size:23
Alignment explanation
Indices: 2124803--2124859 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
2124793 ATTGTTCATG
**
2124803 AACATGTTCGTTTAATGTT-TGTA
1 AACATGTTCGTTTAA-GTTAAATA
*
2124826 AACATGTTCGATTAAGTTAAATA
1 AACATGTTCGTTTAAGTTAAATA
2124849 AACATGTTCGT
1 AACATGTTCGT
2124860 GAATATTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 3 0.10
23 26 0.90
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (23 bp):
AACATGTTCGTTTAAGTTAAATA
Found at i:2124868 original size:23 final size:23
Alignment explanation
Indices: 2124824--2124869 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
2124814 TTAATGTTTG
* *
2124824 TAAACATGTTCGATTAAGTTAAA
1 TAAACATGTTCGATGAAATTAAA
2124847 TAAACATGTTCG-TGAATATTAAA
1 TAAACATGTTCGATGAA-ATTAAA
2124870 CATACGAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (23 bp):
TAAACATGTTCGATGAAATTAAA
Found at i:2160162 original size:20 final size:20
Alignment explanation
Indices: 2160127--2160185 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 20
2160117 AATTATATTT
*
2160127 TTATATTTTATTATATTATAA
1 TTATA-TTTATAATATTATAA
* *
2160148 TTATCTTTATAATATT-T-T
1 TTATATTTATAATATTATAA
2160166 TTATATTTATAA-ATTATAA
1 TTATATTTATAATATTATAA
2160185 T
1 T
2160186 ATGACAGATT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
17 3 0.10
18 12 0.39
19 2 0.06
20 10 0.32
21 4 0.13
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTATATTTATAATATTATAA
Found at i:2162660 original size:15 final size:15
Alignment explanation
Indices: 2162640--2162672 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
2162630 TTAATTTTAA
2162640 AAAATTATAAAAATT
1 AAAATTATAAAAATT
*
2162655 AAAATTATAAACATT
1 AAAATTATAAAAATT
2162670 AAA
1 AAA
2162673 TTACTAACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAATTATAAAAATT
Found at i:2164002 original size:3 final size:3
Alignment explanation
Indices: 2163994--2164038 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
2163984 GCTTTATTTC
2163994 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
2164039 CGGGTTGGTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:2166232 original size:5 final size:5
Alignment explanation
Indices: 2166216--2166250 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
2166206 TAACTACTCT
*
2166216 AAACA AATCA AAACA AAACA AAACA AAACA AAACA
1 AAACA AAACA AAACA AAACA AAACA AAACA AAACA
2166251 GCCCCTTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.77, C:0.20, G:0.00, T:0.03
Consensus pattern (5 bp):
AAACA
Found at i:2167247 original size:22 final size:23
Alignment explanation
Indices: 2167214--2167260 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
2167204 TATGAACTTT
2167214 TTTTATATTTTTGGAA-ATTTTTA
1 TTTTATATTTTT-GAATATTTTTA
2167237 TTTT-TATTTTTGAATATTTTTA
1 TTTTATATTTTTGAATATTTTTA
2167259 TT
1 TT
2167261 ATTTTTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 3 0.13
22 16 0.70
23 4 0.17
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.70
Consensus pattern (23 bp):
TTTTATATTTTTGAATATTTTTA
Found at i:2168523 original size:16 final size:16
Alignment explanation
Indices: 2168498--2168528 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2168488 CCTTGCACAA
*
2168498 ACACATATATATATAT
1 ACACACATATATATAT
2168514 ACACACATATATATA
1 ACACACATATATATA
2168529 CATATTAAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (16 bp):
ACACACATATATATAT
Found at i:2182689 original size:22 final size:23
Alignment explanation
Indices: 2182640--2182690 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
2182630 ATTTATGTCT
* *
2182640 TTTAATAATTTATAAACTTTTAA
1 TTTAATAATTTATAAAATTGTAA
* *
2182663 ATTAATAA-TTATAAAATTGTAC
1 TTTAATAATTTATAAAATTGTAA
2182685 TTTAAT
1 TTTAAT
2182691 TTTTTTTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (23 bp):
TTTAATAATTTATAAAATTGTAA
Found at i:2196551 original size:20 final size:21
Alignment explanation
Indices: 2196526--2196567 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
2196516 GATTCCACCA
2196526 TAAGTTAAA-TTCAAAAGGTT
1 TAAGTTAAATTTCAAAAGGTT
2196546 TAAGTTAAATTTCAAAAGGTT
1 TAAGTTAAATTTCAAAAGGTT
2196567 T
1 T
2196568 GGTTTTAGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (21 bp):
TAAGTTAAATTTCAAAAGGTT
Found at i:2204878 original size:18 final size:18
Alignment explanation
Indices: 2204846--2204893 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
2204836 GTGGAACATG
2204846 ATTTTATAATATTTTAATA
1 ATTTT-TAATATTTTAATA
* *
2204865 ATTTTTAATTTTTTTATA
1 ATTTTTAATATTTTAATA
2204883 ATTTTTTAATA
1 A-TTTTTAATA
2204894 ATTCATTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 12 0.48
19 13 0.52
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTTTAATATTTTAATA
Found at i:2223195 original size:520 final size:511
Alignment explanation
Indices: 2222223--2223238 Score: 1457
Period size: 520 Copynumber: 2.0 Consensus size: 511
2222213 GTATAAAATT
* * *
2222223 TAATTATATGTAAGAACTTAGCTAATTGATTAAATATAAAAGCATACCTTTAAAGGATTGAAAGT
1 TAATTATATGTAAGAACTTAGCTAATTCATTAAATATAAAAGCATACCTTTAAACGATTGAAAGC
* * *
2222288 TTTCAATTTGATTCCATCTTAAACCGAGAGTCTTCAAATTTGTCAGATTATTCAATCCTATATAT
66 TTTCAATTTGATTCCATCTTAAACCGAGAGTCTTCAAATTTGTCAAATTACTCAATCCTATATAC
* ** *
2222353 ATATCCATGTCCAATTCAAATAATTATTATGTTAATAATTTTAATTTCTACTAAATATTTTAATG
131 ATATCCACGTCCAATTCAAATAACCATTATGTTAATAATTTTAATTTCTACTAAATATGTTAATG
* *
2222418 AAATAAAAAGGAAAAAAAAGTAAATCTAAAACTTGAAGTGAAGATGAAAATCCTTAAATGTGAAA
196 AAATAAAAAGGAAAAAAAAGTAAATCTAAAACTTGAAGTGAAGATGAAAATCCTCAAACGTGAAA
* *
2222483 TGTGAATGTACAAATTTGAAACAATTAATTTTATAAGGTTCTAGAAAAAATCAAAATTATAGCTT
261 TGTAAATGTACAAATTTGAAACAATTAATTTTAAAAGGTTCTAGAAAAAATCAAAATTATAGCTT
* * * * *
2222548 TAGTACCTTTAATATCTACTGAACCTTCCAAATTGTTGTAGAACAAAGTCAAAGTCTTTAGGCTT
326 TAATACCTCTAATATCTAATGAACCTTCCAAATAGTTGTAGAACAAAGTCAAAGACTTTAGGCTT
*
2222613 GAAAGCCCTTCAAGAGAGGAAATTGTGTTGTTCCGAAAGAGATTAAAACACAAATAAAGTTCCTC
391 GAAAGCCCTTCAAGAGAGGAAATTGTGCTGTTCCGAAAGAGATTAAAACACAAATAAAGTTCCTC
*
2222678 CAAGTTTGTTAGTCTCACTTGTGTTCCATCTATCACAGGAAAAATAATAATTTATA
456 CAAGTTTGTTAGCCTCACTTGTGTTCCATCTATCACAGGAAAAATAATAATTTATA
* *
2222734 TAATTATATGTAAGAATTTAGCTAATTCATTAAATATAAATGCATACCTTTAAACGATTGAAAGC
1 TAATTATATGTAAGAACTTAGCTAATTCATTAAATATAAAAGCATACCTTTAAACGATTGAAAGC
* * * *
2222799 TTTCAATTTGATTATCA-CTTAAATCGA-ATTTCTTCAAATTTGTCAAATTGCTCAATCCTAT-T
66 TTTCAATTTGATT-CCATCTTAAACCGAGA-GTCTTCAAATTTGTCAAATTACTCAATCCTATAT
* * *
2222861 -CGTATCCACGTCCAATTCAAATAACCATTATGTTAGTAATTTTAATTTCTACTTAATATGTTAA
129 ACATATCCACGTCCAATTCAAATAACCATTATGTTAATAATTTTAATTTCTACTAAATATGTTAA
* * *
2222925 TGAAATAAAAATG-AAAACAAGTAAATCTAAAACTTGAAGTGAAGATGGAAATCCTCAAACGTGA
194 TGAAATAAAAAGGAAAAAAAAGTAAATCTAAAACTTGAAGTGAAGATGAAAATCCTCAAACGTGA
*
2222989 AATGTAAATGTACAAATTTGAAACAATTAATTTTAAAAGGTTTTAGAAAGAATTATCAAGAAAAA
259 AATGTAAATGTACAAATTTGAAACAATTAATTTTAAAAGGTTCTAGAAA-AA--ATC-------A
* * * * * **
2223054 CAAAGTTTTAGCTTTAATACCTCTAATATCTAATGAGCCTTGCAGATAGTTGTTGTGCAAAGTCA
314 -AAA-TTATAGCTTTAATACCTCTAATATCTAATGAACCTTCCAAATAGTTGTAGAACAAAGTCA
*
2223119 AAGACTTTAGGCTTGAAAGCCCTTCAAGAGAGGAAATTGTGCTGTTCCGAAAGAGATTAAAACTC
377 AAGACTTTAGGCTTGAAAGCCCTTCAAGAGAGGAAATTGTGCTGTTCCGAAAGAGATTAAAACAC
* * * *
2223184 AAGTCAAGTTCCTCGAAGTTTGTTAGCCTCACTTGTGTTCCATCTATCATAGGAA
442 AAATAAAGTTCCTCCAAGTTTGTTAGCCTCACTTGTGTTCCATCTATCACAGGAA
2223239 GAAGAAGAAT
Statistics
Matches: 445, Mismatches: 46, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
508 93 0.21
509 70 0.16
510 2 0.00
511 113 0.25
512 2 0.00
518 1 0.00
519 3 0.01
520 161 0.36
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (511 bp):
TAATTATATGTAAGAACTTAGCTAATTCATTAAATATAAAAGCATACCTTTAAACGATTGAAAGC
TTTCAATTTGATTCCATCTTAAACCGAGAGTCTTCAAATTTGTCAAATTACTCAATCCTATATAC
ATATCCACGTCCAATTCAAATAACCATTATGTTAATAATTTTAATTTCTACTAAATATGTTAATG
AAATAAAAAGGAAAAAAAAGTAAATCTAAAACTTGAAGTGAAGATGAAAATCCTCAAACGTGAAA
TGTAAATGTACAAATTTGAAACAATTAATTTTAAAAGGTTCTAGAAAAAATCAAAATTATAGCTT
TAATACCTCTAATATCTAATGAACCTTCCAAATAGTTGTAGAACAAAGTCAAAGACTTTAGGCTT
GAAAGCCCTTCAAGAGAGGAAATTGTGCTGTTCCGAAAGAGATTAAAACACAAATAAAGTTCCTC
CAAGTTTGTTAGCCTCACTTGTGTTCCATCTATCACAGGAAAAATAATAATTTATA
Found at i:2226041 original size:41 final size:41
Alignment explanation
Indices: 2225984--2226347 Score: 469
Period size: 41 Copynumber: 8.9 Consensus size: 41
2225974 ACAAAAGATT
* *
2225984 GAGCAATAGCGGCACTTATGGAGAAA-CGCCGCTAAAGATCG
1 GAGCAATAGCGGCGCTTATGG-GAAAGCGCCGCTAAAGGTCG
* * ** *
2226025 GAGCAATAGCGACACTTATAAGAATGCGCCGCTAAAGGTCG
1 GAGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCG
*
2226066 GAGTAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCG
1 GAGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCG
** * *
2226107 GAGCAATAGCGGCGCTTATAAGAAATCGCCGCTAAAGGTCA
1 GAGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCG
* * *
2226148 GAGCAATAGCGGCGCTTATGGGGAAGTGCCGCTAAAGGTCT
1 GAGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCG
** * *
2226189 GAGCAATAGCGGCGCTTATAAGAAAGCGTCGCCAAAGGTCG
1 GAGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCG
*
2226230 GAGCAATAGCGGCGCTTATGGGAAATCGCCGCTAAAGGTCG
1 GAGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCG
* * * *
2226271 GAGAAATAACGGTGCTTATGGGAAAGCGCTGCTAAAGGTCG
1 GAGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCG
** *
2226312 GATAAATAGTGGCGCTTATGGGAAAGCGCCGCTAAA
1 GAGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAA
2226348 ATTTTTACAT
Statistics
Matches: 278, Mismatches: 44, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
40 3 0.01
41 275 0.99
ACGTcount: A:0.31, C:0.20, G:0.32, T:0.17
Consensus pattern (41 bp):
GAGCAATAGCGGCGCTTATGGGAAAGCGCCGCTAAAGGTCG
Found at i:2228045 original size:10 final size:10
Alignment explanation
Indices: 2228030--2228056 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
2228020 AGGAATCTTT
2228030 TAAATTCTAA
1 TAAATTCTAA
2228040 TAAATTCTAA
1 TAAATTCTAA
2228050 TAAATTC
1 TAAATTC
2228057 AAAATAGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (10 bp):
TAAATTCTAA
Found at i:2228134 original size:9 final size:9
Alignment explanation
Indices: 2228120--2228155 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
2228110 ACTACTATTA
2228120 TTAAATAAT
1 TTAAATAAT
2228129 TTAAATAA-
1 TTAAATAAT
2228137 TTAAATAAT
1 TTAAATAAT
2228146 TTAAATAAT
1 TTAAATAAT
2228155 T
1 T
2228156 GGCTTGAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
TTAAATAAT
Found at i:2228141 original size:17 final size:17
Alignment explanation
Indices: 2228119--2228155 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
2228109 AACTACTATT
2228119 ATTAAATAATTTAAATA
1 ATTAAATAATTTAAATA
2228136 ATTAAATAATTTAAATA
1 ATTAAATAATTTAAATA
2228153 ATT
1 ATT
2228156 GGCTTGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATTAAATAATTTAAATA
Found at i:2229560 original size:18 final size:18
Alignment explanation
Indices: 2229514--2229685 Score: 93
Period size: 18 Copynumber: 9.3 Consensus size: 18
2229504 TAAAAGATTT
2229514 AATTATTTAATTATATTA
1 AATTATTTAATTATATTA
* **
2229532 AAGTAAATAATTATATTA
1 AATTATTTAATTATATTA
*
2229550 AATTATTTAATTATGTTTA
1 AATTATTTAATTAT-ATTA
2229569 ATTATGTATTTAATTATA--A
1 A--AT-TATTTAATTATATTA
** **
2229588 ACCGTA-TCGATTA-ATTA
1 A-ATTATTTAATTATATTA
*
2229605 AA-TATTTAAGTTAATAGATTT
1 AATTATTTAA-TT-AT--ATTA
*
2229626 AATTATTTAATTATTTTA
1 AATTATTTAATTATATTA
* **
2229644 AAGTAAATAATTATATTA
1 AATTATTTAATTATATTA
* *
2229662 AATTATTTAATTATGTTT
1 AATTATTTAATTATATTA
2229680 AATTAT
1 AATTAT
2229686 GTATTTAATT
Statistics
Matches: 113, Mismatches: 28, Indels: 26
0.68 0.17 0.16
Matches are distributed among these distances:
15 3 0.03
16 7 0.06
17 6 0.05
18 62 0.55
19 6 0.05
20 2 0.02
21 9 0.08
22 18 0.16
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (18 bp):
AATTATTTAATTATATTA
Found at i:2229624 original size:112 final size:112
Alignment explanation
Indices: 2229455--2229827 Score: 642
Period size: 112 Copynumber: 3.3 Consensus size: 112
2229445 AATAATTAAA
* *
2229455 TAATTATGTATTTAATTATAAACAGTATCAATTAATTAAATATTTAACTTAAAAGATTTAATTAT
1 TAATTATGTATTTAATTATAAACAGTATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTAT
2229520 TTAATTATATTAAAGTAAATAATTATATTAAATTATTTAATTATGTT
66 TTAATTATATTAAAGTAAATAATTATATTAAATTATTTAATTATGTT
* *
2229567 TAATTATGTATTTAATTATAAACCGTATCGATTAATTAAATATTTAAGTTAATAGATTTAATTAT
1 TAATTATGTATTTAATTATAAACAGTATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTAT
*
2229632 TTAATTATTTTAAAGTAAATAATTATATTAAATTATTTAATTATGTT
66 TTAATTATATTAAAGTAAATAATTATATTAAATTATTTAATTATGTT
** *
2229679 TAATTATGTATTTAATTATAAACAGTAATCCTTTAATTAAATATTTACGTTAAAAGATTTAATTA
1 TAATTATGTATTTAATTATAAACAGT-ATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTA
*
2229744 TTTAATTATATTAAAGCAAATAATTATATTAAATTATTTAATTATGTT
65 TTTAATTATATTAAAGTAAATAATTATATTAAATTATTTAATTATGTT
2229792 TAATTATGTATTTAATTATAAA-A-TATCGATTAATTA
1 TAATTATGTATTTAATTATAAACAGTATCGATTAATTA
2229828 TTTAATTATA
Statistics
Matches: 246, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
110 10 0.04
111 1 0.00
112 133 0.54
113 102 0.41
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (112 bp):
TAATTATGTATTTAATTATAAACAGTATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTAT
TTAATTATATTAAAGTAAATAATTATATTAAATTATTTAATTATGTT
Found at i:2229785 original size:18 final size:18
Alignment explanation
Indices: 2229739--2229798 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
2229729 TAAAAGATTT
2229739 AATTATTTAATTATATTA
1 AATTATTTAATTATATTA
** **
2229757 AAGCAAATAATTATATTA
1 AATTATTTAATTATATTA
* *
2229775 AATTATTTAATTATGTTT
1 AATTATTTAATTATATTA
2229793 AATTAT
1 AATTAT
2229799 GTATTTAATT
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (18 bp):
AATTATTTAATTATATTA
Found at i:2229841 original size:10 final size:12
Alignment explanation
Indices: 2229820--2229856 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
2229810 TAAAATATCG
*
2229820 ATTAATTATTTA
1 ATTAACTATTTA
2229832 ATT-A-TATTTA
1 ATTAACTATTTA
2229842 ATTAACTATTTA
1 ATTAACTATTTA
2229854 ATT
1 ATT
2229857 TAAAATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 9 0.39
11 2 0.09
12 12 0.52
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (12 bp):
ATTAACTATTTA
Found at i:2229842 original size:18 final size:18
Alignment explanation
Indices: 2229764--2229845 Score: 53
Period size: 18 Copynumber: 4.3 Consensus size: 18
2229754 TTAAAGCAAA
2229764 TAATTATATTAAAT-TATT
1 TAATTAT-TTAAATATATT
*
2229782 TAATTATGTTTAATTATGTATT
1 TAATTA--TTTAA--ATATATT
*
2229804 TAATTA-TAAAATATCGA-T
1 TAATTATTTAAATAT--ATT
*
2229822 TAATTATTTAATTATATT
1 TAATTATTTAAATATATT
2229840 TAATTA
1 TAATTA
2229846 ACTATTTAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 18
0.70 0.05 0.25
Matches are distributed among these distances:
17 4 0.08
18 20 0.39
19 14 0.27
20 1 0.02
21 2 0.04
22 10 0.20
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (18 bp):
TAATTATTTAAATATATT
Found at i:2229845 original size:22 final size:22
Alignment explanation
Indices: 2229775--2229856 Score: 76
Period size: 22 Copynumber: 3.5 Consensus size: 22
2229765 AATTATATTA
*
2229775 AATTATTTAATTATGTTTAATT
1 AATTATTTAATTATATTTAATT
**
2229797 -ATGTATTTAATTATAAAATATCGATT
1 AAT-TATTTAATTAT---AT-TTAATT
2229823 AATTATTTAATTATATTTAATT
1 AATTATTTAATTATATTTAATT
*
2229845 AACTATTTAATT
1 AATTATTTAATT
2229857 TAAAATATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
21 2 0.04
22 26 0.54
23 2 0.04
25 1 0.02
26 15 0.31
27 2 0.04
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
AATTATTTAATTATATTTAATT
Found at i:2229866 original size:26 final size:26
Alignment explanation
Indices: 2229790--2229866 Score: 65
Period size: 26 Copynumber: 3.1 Consensus size: 26
2229780 TTTAATTATG
**
2229790 TTTAATTATGTATTTAATTATAAAATA
1 TTTAATTAACTATTTAATT-TAAAATA
** *
2229817 -TCGATTAATTATTTAA-TT---ATA
1 TTTAATTAACTATTTAATTTAAAATA
2229838 TTTAATTAACTATTTAATTTAAAATA
1 TTTAATTAACTATTTAATTTAAAATA
2229864 TTT
1 TTT
2229867 TCGTAAATAA
Statistics
Matches: 38, Mismatches: 7, Indels: 11
0.68 0.12 0.20
Matches are distributed among these distances:
21 3 0.08
22 13 0.34
23 2 0.05
24 1 0.03
25 1 0.03
26 18 0.47
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (26 bp):
TTTAATTAACTATTTAATTTAAAATA
Found at i:2229895 original size:18 final size:18
Alignment explanation
Indices: 2229874--2229937 Score: 74
Period size: 18 Copynumber: 3.3 Consensus size: 18
2229864 TTTTCGTAAA
*
2229874 TAATTATATATAATTATT
1 TAATTATATTTAATTATT
*
2229892 TAATTTTATTTAATTATT
1 TAATTATATTTAATTATT
2229910 TAATTGAAAATATTTAATTATT
1 TAATT----ATATTTAATTATT
2229932 TAATTA
1 TAATTA
2229938 ATAAAAACAG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 22 0.56
22 17 0.44
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
TAATTATATTTAATTATT
Found at i:2229908 original size:8 final size:8
Alignment explanation
Indices: 2229874--2229937 Score: 53
Period size: 8 Copynumber: 7.8 Consensus size: 8
2229864 TTTTCGTAAA
2229874 TAATTATAT
1 TAATTAT-T
2229883 ATAATTATT
1 -TAATTATT
2229892 TAATTTTATT
1 TAA--TTATT
2229902 TAATTATT
1 TAATTATT
2229910 TAATTGA--
1 TAATT-ATT
*
2229917 -AAATATT
1 TAATTATT
2229924 TAATTATT
1 TAATTATT
2229932 TAATTA
1 TAATTA
2229938 ATAAAAACAG
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
5 1 0.02
6 3 0.07
8 25 0.54
9 2 0.04
10 15 0.33
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (8 bp):
TAATTATT
Found at i:2235535 original size:66 final size:66
Alignment explanation
Indices: 2235454--2235610 Score: 233
Period size: 66 Copynumber: 2.4 Consensus size: 66
2235444 CAAATTGCTC
* * *
2235454 AACTTAAAGAGGAGGCTGCAGCGAGAGAAGCAGAGGCTCAAAAAAAATATGATGAACTCCATCTA
1 AACTTAAAGAGGAGGCTGCAGCGAGAGAAGCAGAGGCTAAAAAAAAATATGAAGAACTCCACCTA
2235519 A
66 A
* * *
2235520 AACTTAAAGAGGAGGCTACAGTGAGAGAAGCAGAGTCTAAAAAAAAATATGAAGAACTCCACCTA
1 AACTTAAAGAGGAGGCTGCAGCGAGAGAAGCAGAGGCTAAAAAAAAATATGAAGAACTCCACCTA
*
2235585 C
66 A
* *
2235586 AACTTAAAGTGGAGGCAGCAGCGAG
1 AACTTAAAGAGGAGGCTGCAGCGAG
2235611 GCAAGCGACG
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 80 1.00
ACGTcount: A:0.44, C:0.17, G:0.25, T:0.15
Consensus pattern (66 bp):
AACTTAAAGAGGAGGCTGCAGCGAGAGAAGCAGAGGCTAAAAAAAAATATGAAGAACTCCACCTA
A
Found at i:2236493 original size:34 final size:34
Alignment explanation
Indices: 2236400--2236552 Score: 166
Period size: 34 Copynumber: 4.5 Consensus size: 34
2236390 ACTCTTGACA
* * * *
2236400 CTTGATTTTGTTTTTATTATTGAAAAATTTAGGT
1 CTTGATTTTGGTTTTATTAATGGAAATTTTAGGT
* *
2236434 CTTGATTTTCGATTTATTCAA-GGAAATTTTAGGT
1 CTTGATTTTGGTTTTATT-AATGGAAATTTTAGGT
*
2236468 CTTGATTTTGGTTTTATTAATGGAAATTTTGAAGT
1 CTTGATTTTGGTTTTATTAATGGAAATTTT-AGGT
* * * *
2236503 CTTCATTTTGTTTTTGTTTATGGAAATTTTA-GT
1 CTTGATTTTGGTTTTATTAATGGAAATTTTAGGT
*
2236536 TTTGATTTTGGTTTTAT
1 CTTGATTTTGGTTTTAT
2236553 ATGTATATTA
Statistics
Matches: 99, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
33 17 0.17
34 52 0.53
35 30 0.30
ACGTcount: A:0.23, C:0.05, G:0.17, T:0.56
Consensus pattern (34 bp):
CTTGATTTTGGTTTTATTAATGGAAATTTTAGGT
Found at i:2236957 original size:21 final size:22
Alignment explanation
Indices: 2236913--2236959 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
2236903 CTAAAAACGT
* * *
2236913 AAATATCATAATTTAATAAGAG
1 AAATATCACAAATAAATAAGAG
2236935 AAATATCACAAATAAAT-AGAG
1 AAATATCACAAATAAATAAGAG
2236956 AAAT
1 AAAT
2236960 TACACGTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.60, C:0.06, G:0.09, T:0.26
Consensus pattern (22 bp):
AAATATCACAAATAAATAAGAG
Found at i:2238737 original size:21 final size:22
Alignment explanation
Indices: 2238708--2238755 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
2238698 TTACTACTGC
*
2238708 TTTGTTGTTG-TTTGGTGCCAT
1 TTTGATGTTGTTTTGGTGCCAT
* *
2238729 TTTGATGTTGTTTTGTTGGCAT
1 TTTGATGTTGTTTTGGTGCCAT
2238751 TTTGA
1 TTTGA
2238756 CATTACAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.08, C:0.06, G:0.27, T:0.58
Consensus pattern (22 bp):
TTTGATGTTGTTTTGGTGCCAT
Found at i:2239188 original size:25 final size:23
Alignment explanation
Indices: 2239160--2239211 Score: 68
Period size: 25 Copynumber: 2.2 Consensus size: 23
2239150 ATCTCACTAT
2239160 TAAATAAAAAATAATGAAATTTTTA
1 TAAATAAAAAATAAT--AATTTTTA
* *
2239185 TAAATAAATATTAATAATTTTTA
1 TAAATAAAAAATAATAATTTTTA
2239208 TAAA
1 TAAA
2239212 AGACATAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 12 0.48
25 13 0.52
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (23 bp):
TAAATAAAAAATAATAATTTTTA
Found at i:2239593 original size:17 final size:19
Alignment explanation
Indices: 2239567--2239606 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
2239557 TGACAGTGTA
2239567 TTTAACATTAT-TTAT-TT
1 TTTAACATTATATTATATT
*
2239584 TTTAATATTATATTATATT
1 TTTAACATTATATTATATT
2239603 TTTA
1 TTTA
2239607 TAAAAAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 10 0.50
18 4 0.20
19 6 0.30
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTAACATTATATTATATT
Found at i:2241560 original size:5 final size:5
Alignment explanation
Indices: 2241550--2241580 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
2241540 TTTTTAAAAA
*
2241550 TAATT TAATT TAATT TAATT TAATT TTATT T
1 TAATT TAATT TAATT TAATT TAATT TAATT T
2241581 GAATATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (5 bp):
TAATT
Found at i:2241993 original size:9 final size:9
Alignment explanation
Indices: 2241979--2242018 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
2241969 CGGATTCAAA
2241979 AAAAAAAAG
1 AAAAAAAAG
2241988 -AAAAAAAG
1 AAAAAAAAG
*
2241996 GAAAAAAAG
1 AAAAAAAAG
2242005 AAAAAAAAAG
1 -AAAAAAAAG
2242015 AAAA
1 AAAA
2242019 GGGGAGGTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 8 0.29
9 12 0.43
10 8 0.29
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:2242018 original size:8 final size:8
Alignment explanation
Indices: 2241976--2242011 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
2241966 ACTCGGATTC
2241976 AAAA-AAA
1 AAAAGAAA
2241983 AAAAGAAA
1 AAAAGAAA
2241991 AAAAGGAAA
1 AAAA-GAAA
2242000 AAAAGAAA
1 AAAAGAAA
2242008 AAAA
1 AAAA
2242012 AAGAAAAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 4 0.15
8 15 0.56
9 8 0.30
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAAGAAA
Found at i:2243258 original size:50 final size:50
Alignment explanation
Indices: 2243183--2243317 Score: 146
Period size: 50 Copynumber: 2.7 Consensus size: 50
2243173 CTACAGGTCT
* * * * *
2243183 CAATGCCATGAAAACACGAAGGGAAATATGTAAGACCACAACGGCGGATC
1 CAATGCCATAAAAACAAGAAGGGAAAGATCTAAGACCACAACGGCAGATC
* *
2243233 CAATGCCATAAAAACAAGACGGGAAAGATCTAAGACCGCAACGGCAGATC
1 CAATGCCATAAAAACAAGAAGGGAAAGATCTAAGACCACAACGGCAGATC
* ** *
2243283 CAATACCGCAAAGATACAA-AAGGGAAAGGTCTAAG
1 CAATGCCATAAA-A-ACAAGAAGGGAAAGATCTAAG
2243318 TTGCAACGAC
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
50 52 0.73
51 15 0.21
52 4 0.06
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.11
Consensus pattern (50 bp):
CAATGCCATAAAAACAAGAAGGGAAAGATCTAAGACCACAACGGCAGATC
Found at i:2243668 original size:92 final size:92
Alignment explanation
Indices: 2243511--2244462 Score: 1654
Period size: 92 Copynumber: 10.5 Consensus size: 92
2243501 ATCAAAATAC
* * * *
2243511 CAAGTCTTTATCTCTCTGAAGATGTAGTAAGAGCAAGATAAAGCATAAAACATCAAATCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
2243576 TCTTGAAGTTGTAGTAAAGTTGGATAG
66 TCTTGAAGTTGTAGTAAAGTTGGATAG
* *
2243603 CAAGTCTTTATCTCTCTAAAGTTGTAGTAAGAGCAAGATGGAGCATCAAACATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
2243668 TCTTGAAGTTGTAGTAAAGTTGGATAG
66 TCTTGAAGTTGTAGTAAAGTTGGATAG
* * * *
2243695 CAAGTCTTTATCTTTCTGAAGTTGTAGTAAGAGCAAGATGTAGCATCAAACATTAA-CCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
2243759 TCTTGAAGTTGTAGTAAAGTTGGATAG
66 TCTTGAAGTTGTAGTAAAGTTGGATAG
* *
2243786 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGTAAGGTGAAGCATCAAACATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
*
2243851 TCTTGAAGTTGTAGTAAAGTTGGATAA
66 TCTTGAAGTTGTAGTAAAGTTGGATAG
2243878 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGC-A-A-GAAGCATCAAACATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
2243940 TCTTGAAGTTGTAGTAAAGTTGGATAG
66 TCTTGAAGTTGTAGTAAAGTTGGATAG
* *
2243967 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGGAGCATCAAATATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
2244032 TCTTGAAGTTGTAGTAAAGTTGGATAG
66 TCTTGAAGTTGTAGTAAAGTTGGATAG
*
2244059 TAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
2244124 TCTTGAAGTTGTAGTAAAGTTGGATAG
66 TCTTGAAGTTGTAGTAAAGTTGGATAG
* *
2244151 CAAG------TCTCTCTGAAGTTGTAGTAAGAGCAAGATGGAGCATCAAACATCAATTCCTATCA
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
*
2244210 GCTTGAAGTTGTAGTAAAGTTGGATAG
66 TCTTGAAGTTGTAGTAAAGTTGGATAG
*
2244237 CAAGTCTTTATCTCTCTAAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
2244302 TCTTGAAGTTGTAGTAAAGTTGGATAG
66 TCTTGAAGTTGTAGTAAAGTTGGATAG
2244329 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
2244394 TCTTGAAGTTGTAGTAAAGTTGGATAG
66 TCTTGAAGTTGTAGTAAAGTTGGATAG
2244421 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAA
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAA
2244463 ACTTCGATAC
Statistics
Matches: 815, Mismatches: 35, Indels: 20
0.94 0.04 0.02
Matches are distributed among these distances:
86 83 0.10
89 86 0.11
90 1 0.00
91 87 0.11
92 558 0.68
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (92 bp):
CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
TCTTGAAGTTGTAGTAAAGTTGGATAG
Found at i:2244316 original size:270 final size:271
Alignment explanation
Indices: 2243511--2244460 Score: 1568
Period size: 270 Copynumber: 3.5 Consensus size: 271
2243501 ATCAAAATAC
* * * *
2243511 CAAGTCTTTATCTCTCTGAAGATGTAGTAAGAGCAAGATAAAGCATAAAACATCAAATCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
*
2243576 TCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTAAAGTTGTAGTAAGAGCAAGA
66 TCTTGAAGTTGTAGTAAAGTTGGATAGCAAG----T-TCTCTCTGAAGTTGTAGTAAGAGCAAGA
2243641 TGGAGCATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTAT
126 TGGAGCATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTAT
* * * *
2243706 CTTTCTGAAGTTGTAGTAAGAGCAAGATGTAGCATCAAACATTAA-CCCTATCCTCTTGAAGTTG
191 CTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCCTCTTGAAGTTG
2243770 TAGTAAAGTTGGATAG
256 TAGTAAAGTTGGATAG
* *
2243786 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGTAAGGTGAAGCATCAAACATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
*
2243851 TCTTGAAGTTGTAGTAAAGTTGGATAACAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGA
66 TCTTGAAGTTGTAGTAAAGTTGGATAGCAAG----T-TCTCTCTGAAGTTGTAGTAAGAGCAAGA
2243916 ---AGCATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTAT
126 TGGAGCATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTAT
* *
2243978 CTCTCTGAAGTTGTAGTAAGAGCAAGATGGAGCATCAAATATCAATTCCTATCCTCTTGAAGTTG
191 CTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCCTCTTGAAGTTG
2244043 TAGTAAAGTTGGATAG
256 TAGTAAAGTTGGATAG
*
2244059 TAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
2244124 TCTTGAAGTTGTAGTAAAGTTGGATAGCAAG-TCTCTCTGAAGTTGTAGTAAGAGCAAGATGGAG
66 TCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTTCTCTCTGAAGTTGTAGTAAGAGCAAGATGGAG
**
2244188 CATCAAACATCAATTCCTATCAGCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTC
131 CATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTC
*
2244253 TAAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTA
196 TGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTA
2244318 AAGTTGGATAG
261 AAGTTGGATAG
2244329 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
1 CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
2244394 TCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGA
66 TCTTGAAGTTGTAGTAAAGTTGGATAGCAAG----T-TCTCTCTGAAGTTGTAGTAAGAGCAAGA
2244459 TG
126 TG
2244461 AAACTTCGAT
Statistics
Matches: 642, Mismatches: 23, Indels: 19
0.94 0.03 0.03
Matches are distributed among these distances:
267 28 0.04
270 233 0.36
272 103 0.16
273 126 0.20
275 122 0.19
276 30 0.05
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (271 bp):
CAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCC
TCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTTCTCTCTGAAGTTGTAGTAAGAGCAAGATGGAG
CATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTAAAGTTGGATAGCAAGTCTTTATCTCTC
TGAAGTTGTAGTAAGAGCAAGATGAAGCATCAAACATCAATTCCTATCCTCTTGAAGTTGTAGTA
AAGTTGGATAG
Found at i:2245184 original size:17 final size:18
Alignment explanation
Indices: 2245162--2245197 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
2245152 TTGTTTGGTG
2245162 TTTAAATTTATTTT-AAA
1 TTTAAATTTATTTTGAAA
2245179 TTTAAATTTATTTTGAAA
1 TTTAAATTTATTTTGAAA
2245197 T
1 T
2245198 GAAAATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (18 bp):
TTTAAATTTATTTTGAAA
Found at i:2245203 original size:18 final size:17
Alignment explanation
Indices: 2245165--2245206 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
2245155 TTTGGTGTTT
**
2245165 AAATTTATTTTAAATTT
1 AAATTTATTTTAAATGA
2245182 AAATTTATTTTGAAATGA
1 AAATTTATTTT-AAATGA
2245200 AAATTTA
1 AAATTTA
2245207 AAATTTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (17 bp):
AAATTTATTTTAAATGA
Found at i:2246589 original size:30 final size:30
Alignment explanation
Indices: 2246521--2246919 Score: 331
Period size: 30 Copynumber: 13.6 Consensus size: 30
2246511 CCCTAAATTA
* *
2246521 TCCAAAAATTGCA-TTTTAACCCAAAAACT
1 TCCAAAAATTACATTTTTAACCCTAAAACT
*
2246550 TCC-AAAATTACATTTTTAACCATAAAACT
1 TCCAAAAATTACATTTTTAACCCTAAAACT
*
2246579 TCCTAAAATTACATTTTTAACCCTAAAACT
1 TCCAAAAATTACATTTTTAACCCTAAAACT
* * * *
2246609 TTCAAAAATTCCATTTTGAACCCAAAAACT
1 TCCAAAAATTACATTTTTAACCCTAAAACT
* * **
2246639 TCCAAAAATTCCATTTTGAACCCCGAAACT
1 TCCAAAAATTACATTTTTAACCCTAAAACT
* * * **
2246669 TCCCAAAATAACATTTTT-ACTCTCGAACT
1 TCCAAAAATTACATTTTTAACCCTAAAACT
* *
2246698 TCCAAAAATT-CTATTTTTGA-CCTCGAAACT
1 TCCAAAAATTAC-ATTTTTAACCCT-AAAACT
* * *
2246728 TCCCAAAATTACGTTTTT-ACCCTCAAACT
1 TCCAAAAATTACATTTTTAACCCTAAAACT
* * *
2246757 TCCAAAAAATACATTTTTGACCCCAAAACTT
1 TCCAAAAATTACATTTTTAACCCTAAAAC-T
**
2246788 TCC-AAAATTACATTTTT-ACCCTCGAACT
1 TCCAAAAATTACATTTTTAACCCTAAAACT
* **
2246816 TTCAAAAATT-CTATTTTTAA--CTCGAACT
1 TCCAAAAATTAC-ATTTTTAACCCTAAAACT
* *
2246844 TCCAAAAATTCCATTTTTAACCC-CAAACT
1 TCCAAAAATTACATTTTTAACCCTAAAACT
* * *
2246873 TTCAAAAATTCCATTTTTGACCCTAAAA-T
1 TCCAAAAATTACATTTTTAACCCTAAAACT
2246902 TCTC-AAAATTACCATTTT
1 TC-CAAAAATTA-CATTTT
2246920 ACCCCCGAAT
Statistics
Matches: 307, Mismatches: 45, Indels: 35
0.79 0.12 0.09
Matches are distributed among these distances:
28 38 0.12
29 118 0.38
30 146 0.48
31 5 0.02
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.34
Consensus pattern (30 bp):
TCCAAAAATTACATTTTTAACCCTAAAACT
Found at i:2246607 original size:59 final size:56
Alignment explanation
Indices: 2246521--2246919 Score: 315
Period size: 59 Copynumber: 6.8 Consensus size: 56
2246511 CCCTAAATTA
* *
2246521 TCCAAAAATTGCA-TTTTAACCCAAAAACTTCCAAAATTACATTTTTAACCATAAAACT
1 TCCAAAAATT-CATTTTTAACCCTAAAACTTCCAAAATTACATTTTT-ACC-TCAAACT
* * * *
2246579 TCCTAAAATTACATTTTTAACCCTAAAACTTTCAAAAATTCCATTTTGAACC-CAAAAACT
1 TCCAAAAATT-CATTTTTAACCCTAAAAC-TTCCAAAATTACATTTT-TACCTC--AAACT
* ** * *
2246639 TCCAAAAATTCCATTTTGAACCCCGAAACTTCCCAAAATAACATTTTTACTCTCGAACT
1 TCCAAAAATT-CATTTTTAACCCTAAAACTT-CCAAAATTACATTTTTAC-CTCAAACT
* * *
2246698 TCCAAAAATTCTATTTTTGA-CCTCGAAACTTCCCAAAATTACGTTTTTACCCTCAAACT
1 TCCAAAAATTC-ATTTTTAACCCT-AAAACTT-CCAAAATTACATTTTTA-CCTCAAACT
* * * *
2246757 TCCAAAAAATACATTTTTGACCCCAAAACTTTCCAAAATTACATTTTTACCCTCGAACT
1 TCC-AAAAATTCATTTTTAACCCTAAAAC-TTCCAAAATTACATTTTTA-CCTCAAACT
* ** * *
2246816 TTCAAAAATTCTATTTTTAA--CTCGAACTTCCAAAAATTCCATTTTTAACCCCAAACT
1 TCCAAAAATTC-ATTTTTAACCCTAAAACTTCC-AAAATTACATTTTT-ACCTCAAACT
* *
2246873 TTCAAAAATTCCATTTTTGACCCTAAAA-TTCTCAAAATTACCATTTT
1 TCCAAAAATT-CATTTTTAACCCTAAAACTTC-CAAAATTA-CATTTT
2246920 ACCCCCGAAT
Statistics
Matches: 278, Mismatches: 41, Indels: 43
0.77 0.11 0.12
Matches are distributed among these distances:
56 4 0.01
57 41 0.15
58 32 0.12
59 128 0.46
60 72 0.26
61 1 0.00
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.34
Consensus pattern (56 bp):
TCCAAAAATTCATTTTTAACCCTAAAACTTCCAAAATTACATTTTTACCTCAAACT
Found at i:2246986 original size:29 final size:28
Alignment explanation
Indices: 2246901--2246992 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 28
2246891 GACCCTAAAA
* *
2246901 TTCTCAAAATTACCATTTTACCCCCGAAT
1 TTCTAAAAATTACCATTTTA-CCCCGATT
* * * *
2246930 GTCCAAAAATCA-CATTTTTTATCCCGATT
1 TTCTAAAAATTACCA--TTTTACCCCGATT
2246959 TTCTAAAAATTACCATTTTACCCTCGATT
1 TTCTAAAAATTACCATTTTACCC-CGATT
*
2246988 ATCTA
1 TTCTA
2246993 TAATGTCATT
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
28 9 0.19
29 32 0.67
30 7 0.15
ACGTcount: A:0.32, C:0.26, G:0.04, T:0.38
Consensus pattern (28 bp):
TTCTAAAAATTACCATTTTACCCCGATT
Found at i:2247202 original size:28 final size:29
Alignment explanation
Indices: 2247167--2247238 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 29
2247157 CTAAATTTTC
**
2247167 CCAAAATTACCATTTTTTTCT-CGAAAGT
1 CCAAAATTACCATTTTTGCCTCCGAAAGT
* * *
2247195 TCAAAATTACCA-CTTTGCCTCCGAGAGT
1 CCAAAATTACCATTTTTGCCTCCGAAAGT
2247223 CCAAAATTACCATTTT
1 CCAAAATTACCATTTT
2247239 ACCCCCGGGT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
27 5 0.14
28 28 0.80
29 2 0.06
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (29 bp):
CCAAAATTACCATTTTTGCCTCCGAAAGT
Found at i:2251763 original size:25 final size:24
Alignment explanation
Indices: 2251716--2251763 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
2251706 ATTTTAAAAT
*
2251716 TTAAAAAATAAAAAGACCAAATTC
1 TTAAAAAATAAAAAGACAAAATTC
*
2251740 TTAAAAAATAAAAATACAAGAATT
1 TTAAAAAATAAAAAGACAA-AATT
2251764 AAACTATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.65, C:0.08, G:0.04, T:0.23
Consensus pattern (24 bp):
TTAAAAAATAAAAAGACAAAATTC
Found at i:2252104 original size:18 final size:18
Alignment explanation
Indices: 2252048--2252097 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
2252038 TAAATATATG
2252048 TATATTTTTTATTTATAA
1 TATATTTTTTATTTATAA
2252066 TATCATTGTTTTATTTTATAA
1 TAT-ATT-TTTTA-TTTATAA
2252087 T-TATTTTTTAT
1 TATATTTTTTAT
2252098 CTCATAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 1 0.03
18 8 0.28
19 6 0.21
20 6 0.21
21 8 0.28
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (18 bp):
TATATTTTTTATTTATAA
Found at i:2255622 original size:35 final size:34
Alignment explanation
Indices: 2255583--2255679 Score: 122
Period size: 35 Copynumber: 2.8 Consensus size: 34
2255573 TTGACTCGGC
2255583 TTTATTAATGGAAAATTTAGGTCTTCATTTTTCGT
1 TTTATTAATGGAAAATTTAGGTCTTCATTTTT-GT
* * ** *
2255618 TTTATTCATGGAAATTTTACTTCTCTGATTTTTGT
1 TTTATTAATGGAAAATTTAGGTCT-TCATTTTTGT
*
2255653 TTTATTAATGGAAAAATTAGGTCTTCA
1 TTTATTAATGGAAAATTTAGGTCTTCA
2255680 GTTTCCTTTT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
34 2 0.04
35 41 0.82
36 7 0.14
ACGTcount: A:0.27, C:0.09, G:0.13, T:0.51
Consensus pattern (34 bp):
TTTATTAATGGAAAATTTAGGTCTTCATTTTTGT
Found at i:2258832 original size:56 final size:57
Alignment explanation
Indices: 2258712--2258832 Score: 129
Period size: 57 Copynumber: 2.1 Consensus size: 57
2258702 TAGTGTTGAC
* * * * ****
2258712 TTGGCTTTATTAATGGAAAATTTAGGTCTTCATTTTTCGTTTTATTCTTCTTTGATT
1 TTGGTTTTATTAATGGAAAATTTAAGTCTTCACTTTGCGTTTTATTCTTCGGAAATT
* *
2258769 TTTGTTTTATTAATGGAAATTTTAAGTCTTCACTTTGC-TTTTATTCTT-GGAAATT
1 TTGGTTTTATTAATGGAAAATTTAAGTCTTCACTTTGCGTTTTATTCTTCGGAAATT
2258824 TTAGGTTTT
1 TT-GGTTTT
2258833 GGTTTTGGTT
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
55 5 0.10
56 15 0.29
57 32 0.62
ACGTcount: A:0.21, C:0.09, G:0.14, T:0.56
Consensus pattern (57 bp):
TTGGTTTTATTAATGGAAAATTTAAGTCTTCACTTTGCGTTTTATTCTTCGGAAATT
Found at i:2274529 original size:31 final size:31
Alignment explanation
Indices: 2274494--2274552 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
2274484 AAGATCCTTA
2274494 AACTATTCGAAAATTTTCATTTAAGTCATTG
1 AACTATTCGAAAATTTTCATTTAAGTCATTG
* * *
2274525 AACTATTCTAAAGTTTTTATTTAAGTCA
1 AACTATTCGAAAATTTTCATTTAAGTCA
2274553 CTAAGCTGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (31 bp):
AACTATTCGAAAATTTTCATTTAAGTCATTG
Found at i:2276148 original size:17 final size:17
Alignment explanation
Indices: 2276126--2276158 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
2276116 CACACAGTCT
*
2276126 ATCACATGATCGTGTGG
1 ATCACACGATCGTGTGG
2276143 ATCACACGATCGTGTG
1 ATCACACGATCGTGTG
2276159 TCCAGCCCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (17 bp):
ATCACACGATCGTGTGG
Found at i:2278134 original size:30 final size:29
Alignment explanation
Indices: 2278073--2278138 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 29
2278063 TTTTTTACAT
*
2278073 TTTTATAATTTTTAAAAAATTAAATTAAA
1 TTTTATCATTTTTAAAAAATTAAATTAAA
*
2278102 TTTTATCATTTTTAAAAAGTTAAAGTGT-AA
1 TTTTATCATTTTTAAAAAATTAAA-T-TAAA
2278132 TTTTATC
1 TTTTATC
2278139 TTCATTAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 22 0.67
30 10 0.30
31 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (29 bp):
TTTTATCATTTTTAAAAAATTAAATTAAA
Found at i:2287031 original size:20 final size:18
Alignment explanation
Indices: 2286996--2287034 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
2286986 TTTTGTTAAT
2286996 ATATAAAATAATTTTATA
1 ATATAAAATAATTTTATA
*
2287014 ATATAAATTCAATGTTTATA
1 ATATAAAAT-AAT-TTTATA
2287034 A
1 A
2287035 AACTTAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 3 0.17
20 7 0.39
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
ATATAAAATAATTTTATA
Found at i:2289082 original size:117 final size:117
Alignment explanation
Indices: 2288914--2289189 Score: 473
Period size: 117 Copynumber: 2.4 Consensus size: 117
2288904 TACCCGGGAG
2288914 AAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATG
1 AAAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATGGAATTTTGGAAAGTTCAGGGGTAAAATG
*
2288978 GTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
65 GTAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCGGGGGT
* * *
2289031 AAATTGGTAATTTTTGGTGAAATCGGGGTTAAAATGGAATTTTGGAGAGTTCGGGGGTAAAATGG
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATGG
*
2289096 TAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAGAGTTCGGGGGT
66 TAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCGGGGGT
* *
2289148 AAAATGGTAATTTTTGGTGAAATCAGGGTTAAAATGTAATTT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGAATTT
2289190 CCTAGAATTT
Statistics
Matches: 150, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
117 131 0.87
118 19 0.13
ACGTcount: A:0.33, C:0.03, G:0.31, T:0.33
Consensus pattern (117 bp):
AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATGG
TAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCGGGGGT
Found at i:2289097 original size:58 final size:59
Alignment explanation
Indices: 2288914--2289189 Score: 468
Period size: 59 Copynumber: 4.7 Consensus size: 59
2288904 TACCCGGGAG
*
2288914 AAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
2288972 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
* *
2289031 AAATTGGTAATTTTTGGTGAAATCGGGGTT-AAAATGGAATTTTGGAGAGTTCGGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
* *
2289089 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAGAGTTCGGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
* *
2289148 AAAATGGTAATTTTTGGTGAAATCAGGGTT-AAAATGTAATTT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTT
2289190 CCTAGAATTT
Statistics
Matches: 208, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
58 76 0.37
59 132 0.63
ACGTcount: A:0.33, C:0.03, G:0.31, T:0.33
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
Found at i:2289205 original size:117 final size:115
Alignment explanation
Indices: 2288914--2289222 Score: 433
Period size: 117 Copynumber: 2.6 Consensus size: 115
2288904 TACCCGGGAG
*
2288914 AAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATG
1 AAAATGGTAATTTTTGGTGAAATCGGGGTT-AAAATGGAATTTTAG-AA-TTCAGGGGTAAAATG
*
2288978 GTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGT
63 GTAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCGGGGGT
* * *
2289031 AAATTGGTAATTTTTGGTGAAATCGGGGTTAAAATGGAATTTTGGAGAGTTCGGGGGTAAAATGG
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGAATTTT--AGAATTCAGGGGTAAAATGG
*
2289096 TAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAGAGTTCGGGGGT
64 TAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCGGGGGT
* * **
2289148 AAAATGGTAATTTTTGGTGAAATCAGGGTTAAAATGTAATTTCCTAGAATTTTGGGGTCAAAAT-
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGAATTT--TAGAATTCAGGGGT-AAAATG
*
2289212 GCAATTTTTGG
63 GTAATTTTTGG
2289223 ACTGTTTGGG
Statistics
Matches: 173, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
117 146 0.84
118 25 0.14
119 2 0.01
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (115 bp):
AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAATGGAATTTTAGAATTCAGGGGTAAAATGGTA
ATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCGGGGGT
Found at i:2289211 original size:59 final size:57
Alignment explanation
Indices: 2288874--2289222 Score: 384
Period size: 59 Copynumber: 6.0 Consensus size: 57
2288864 AAGAAACAAC
* ** ** *
2288874 GAAATCGGGGTTGAAAATGGGACCTTTAGATACCCGGGAG-AAAATGGTAA-TTTTGGT
1 GAAATCGGGGTTAAAAAT-GGAATTTTAGA-ATTCGGGGGTAAAATGGTAATTTTTGGT
* *
2288931 GAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTTGGT
1 GAAATCGGGGTTAAAAATGGAATTTTAG-AA-TTCGGGGGTAAAATGGTAATTTTTGGT
* *
2288990 GAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAATTGGTAATTTTTGGT
1 GAAATCGGGGTTAAAAATGGAATTTTAG-AA-TTCGGGGGTAAAATGGTAATTTTTGGT
*
2289049 GAAATCGGGGTT-AAAATGGAATTTTGGAGAGTTCGGGGGTAAAATGGTAATTTTTGGT
1 GAAATCGGGGTTAAAAATGGAATTTT--AGAATTCGGGGGTAAAATGGTAATTTTTGGT
* *
2289107 GAAATCGGGGTTAAAAATAGAATTTTGGAGAGTTCGGGGGTAAAATGGTAATTTTTGGT
1 GAAATCGGGGTTAAAAATGGAATTTT--AGAATTCGGGGGTAAAATGGTAATTTTTGGT
* * ** *
2289166 GAAATCAGGGTT-AAAATGTAATTTCCTAGAATTTTGGGGTCAAAAT-GCAATTTTTGG
1 GAAATCGGGGTTAAAAATGGAATTT--TAGAATTCGGGGGT-AAAATGGTAATTTTTGG
2289223 ACTGTTTGGG
Statistics
Matches: 261, Mismatches: 21, Indels: 19
0.87 0.07 0.06
Matches are distributed among these distances:
56 8 0.03
57 22 0.08
58 91 0.35
59 138 0.53
60 2 0.01
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.32
Consensus pattern (57 bp):
GAAATCGGGGTTAAAAATGGAATTTTAGAATTCGGGGGTAAAATGGTAATTTTTGGT
Found at i:2290988 original size:17 final size:16
Alignment explanation
Indices: 2290962--2291039 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 16
2290952 AATTTAATTT
2290962 ATAAATTTAAATTTATA
1 ATAAA-TTAAATTTATA
*
2290979 ATAAACTTAAATTTTTA
1 ATAAA-TTAAATTTATA
*
2290996 AGTAAATTTAAATTTAAA
1 A-TAAA-TTAAATTTATA
*
2291014 ATAAATTTAATTT-TA
1 ATAAATTAAATTTATA
2291029 A-AAATTAAATT
1 ATAAATTAAATT
2291040 ATATCTCATT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
14 9 0.17
15 2 0.04
16 7 0.13
17 20 0.38
18 14 0.27
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (16 bp):
ATAAATTAAATTTATA
Found at i:2296096 original size:59 final size:58
Alignment explanation
Indices: 2295952--2296205 Score: 384
Period size: 58 Copynumber: 4.4 Consensus size: 58
2295942 AAATTCGGGA
* * * *
2295952 GGGGGTAAAATGGTAA-TTTTAGTGAAATCGGGGTTAAAATTGGGATTTTGGAAAGTTC
1 GGGGGTAAAATGGTAATTTTTA-TGAAACCGGGGTTAAAAATGGAATTTTGGAAAGCTC
* * *
2296010 AGGGGTAAAATGGTAATTTTTATGAAACTGGGGTTAAAAATAGAATTTTGGAAAGCTC
1 GGGGGTAAAATGGTAATTTTTATGAAACCGGGGTTAAAAATGGAATTTTGGAAAGCTC
*
2296068 GGGGGTAAAATGGTAAATTTTTATGAAACCGAGGTTAAAAATGGAATTTTGGAAAGCTC
1 GGGGGTAAAATGGT-AATTTTTATGAAACCGGGGTTAAAAATGGAATTTTGGAAAGCTC
* *
2296127 GGGGGTAAAATGGTAATTTTTATGAAACCGGGGTTAAAAATGGAATTTTGAAAAGTTC
1 GGGGGTAAAATGGTAATTTTTATGAAACCGGGGTTAAAAATGGAATTTTGGAAAGCTC
*
2296185 GAGGGTAAAATGGTAATTTTT
1 GGGGGTAAAATGGTAATTTTT
2296206 GGACCATCCA
Statistics
Matches: 179, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
58 119 0.66
59 60 0.34
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.31
Consensus pattern (58 bp):
GGGGGTAAAATGGTAATTTTTATGAAACCGGGGTTAAAAATGGAATTTTGGAAAGCTC
Found at i:2296120 original size:117 final size:117
Alignment explanation
Indices: 2295952--2296205 Score: 386
Period size: 117 Copynumber: 2.2 Consensus size: 117
2295942 AAATTCGGGA
* * * * *
2295952 GGGGGTAAAATGGTAA-TTTTAGTGAAATCGGGGTTAAAATTGGGATTTTGGAAAGTTCAGGGGT
1 GGGGGTAAAATGGTAATTTTTAGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGCTCAGGGGT
* *
2296016 AAAATGGTAATTTTTATGAAACTGGGGTTAAAAATAGAATTTTGGAAAGCTC
66 AAAATGGTAATTTTTATGAAACCGGGGTTAAAAATAGAATTTTGAAAAGCTC
*
2296068 GGGGGTAAAATGGTAAATTTTTA-TGAAACCGAGGTTAAAAATGGAATTTTGGAAAGCTCGGGGG
1 GGGGGTAAAATGGT-AATTTTTAGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGCTCAGGGG
* *
2296132 TAAAATGGTAATTTTTATGAAACCGGGGTTAAAAATGGAATTTTGAAAAGTTC
65 TAAAATGGTAATTTTTATGAAACCGGGGTTAAAAATAGAATTTTGAAAAGCTC
*
2296185 GAGGGTAAAATGGTAATTTTT
1 GGGGGTAAAATGGTAATTTTT
2296206 GGACCATCCA
Statistics
Matches: 125, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
116 21 0.17
117 99 0.79
118 5 0.04
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.31
Consensus pattern (117 bp):
GGGGGTAAAATGGTAATTTTTAGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGCTCAGGGGT
AAAATGGTAATTTTTATGAAACCGGGGTTAAAAATAGAATTTTGAAAAGCTC
Found at i:2296195 original size:28 final size:27
Alignment explanation
Indices: 2295953--2296204 Score: 106
Period size: 29 Copynumber: 8.7 Consensus size: 27
2295943 AATTCGGGAG
*
2295953 GGGGTAAAATGGTAATTTTAGTGAAA-TC
1 GGGGTAAAATGGTAATTTT-G-AAAAGTC
* *
2295981 GGGGTTAAAATTGG-GATTTTGGAAAGTTC
1 GGGG-TAAAA-TGGTAATTTTGAAAAG-TC
* *
2296010 AGGGGTAAAATGGTAATTTTTATGAAACT-
1 -GGGGTAAAATGGTAATTTTGA--AAAGTC
* *
2296039 GGGGTTAAAAATAG-AATTTTGGAAAGCTC
1 GGGG-T-AAAATGGTAATTTTGAAAAG-TC
* *
2296068 GGGGGTAAAATGGTAAATTTTTATGAAA-CC
1 -GGGGTAAAATGGT-AATTTTGA--AAAGTC
* *
2296098 GAGGTTAAAAATGG-AATTTTGGAAAGCTC
1 G-GGGT-AAAATGGTAATTTTGAAAAG-TC
* *
2296127 GGGGGTAAAATGGTAATTTTTATGAAA-CC
1 -GGGGTAAAATGGTAATTTTGA--AAAGTC
2296156 GGGGTTAAAAATGG-AATTTTGAAAAGTTC
1 GGGG-T-AAAATGGTAATTTTGAAAAG-TC
2296185 GAGGGTAAAATGGTAATTTT
1 G-GGGTAAAATGGTAATTTT
2296205 TGGACCATCC
Statistics
Matches: 170, Mismatches: 23, Indels: 61
0.67 0.09 0.24
Matches are distributed among these distances:
27 13 0.08
28 37 0.22
29 65 0.38
30 39 0.23
31 13 0.08
32 3 0.02
ACGTcount: A:0.36, C:0.05, G:0.28, T:0.31
Consensus pattern (27 bp):
GGGGTAAAATGGTAATTTTGAAAAGTC
Found at i:2297241 original size:15 final size:15
Alignment explanation
Indices: 2297221--2297255 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
2297211 CTTTGCGTGC
* *
2297221 GAACGACGGCCGAAG
1 GAACGACAGCCGAAA
2297236 GAACGACAGCCGAAA
1 GAACGACAGCCGAAA
2297251 GAACG
1 GAACG
2297256 CAGACCACGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.40, C:0.26, G:0.34, T:0.00
Consensus pattern (15 bp):
GAACGACAGCCGAAA
Found at i:2298227 original size:18 final size:16
Alignment explanation
Indices: 2298206--2298280 Score: 80
Period size: 17 Copynumber: 4.4 Consensus size: 16
2298196 TTTTAAAATT
2298206 ATTTCAAATTTAAACTAA
1 ATTT-AAATTTAAA-TAA
2298224 ATTTAAATTTAAA-AA
1 ATTTAAATTTAAATAA
*
2298239 TTTTAAATTTAAAGTAA
1 ATTTAAATTTAAA-TAA
*
2298256 ATTTAATTTTAGAAATAA
1 ATTTAAATTT--AAATAA
2298274 ATTTAAA
1 ATTTAAA
2298281 AATCATTTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
15 14 0.29
17 19 0.39
18 13 0.27
19 3 0.06
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.43
Consensus pattern (16 bp):
ATTTAAATTTAAATAA
Found at i:2298693 original size:76 final size:76
Alignment explanation
Indices: 2298562--2299079 Score: 885
Period size: 76 Copynumber: 6.8 Consensus size: 76
2298552 TCGAGGCTTC
* * *
2298562 ATCTTGCTCTTACTTCAATTTTAGAGAGATAAAGACTTGCTATCCAGCTTTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAA-TTT-CAGAGATAAAGACTTGTTATCCAGCTCTACTTCAATTTCAAG
2298627 AGGATAGGAAATG
64 AGGATAGGAAATG
* *
2298640 ATTTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCTACTTCAATTTCAAGAG
*
2298705 GAAAGGAAATG
66 GATAGGAAATG
*
2298716 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCTACTTCAATTTCAAGAG
2298781 GATAGGAAATG
66 GATAGGAAATG
2298792 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCTACTTCAATTTCAAGAG
2298857 GATAGGAAATG
66 GATAGGAAATG
*
2298868 ATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCTACTTCAATTTCAAGAG
2298933 GATAGGAAATG
66 GATAGGAAATG
* * *
2298944 ATGTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGATATCCAGCT-TCACTTCAATTTCAAGA
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCT-ACTTCAATTTCAAGA
2299008 GGATAGGAAATG
65 GGATAGGAAATG
*
2299020 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTTACTTCAATTT
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTC-TACTTCAATTT
2299080 TAGAGATAAA
Statistics
Matches: 421, Mismatches: 16, Indels: 7
0.95 0.04 0.02
Matches are distributed among these distances:
75 1 0.00
76 389 0.92
77 13 0.03
78 18 0.04
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (76 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCTACTTCAATTTCAAGAG
GATAGGAAATG
Found at i:2299132 original size:267 final size:267
Alignment explanation
Indices: 2298798--2299347 Score: 1012
Period size: 267 Copynumber: 2.1 Consensus size: 267
2298788 AATGATCTTG
* *
2298798 CTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
*
2298863 AAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCTACTTCAATTTC
66 AAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
*
2298928 AAGAGGATAGGAAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGATATCCAGCTTC
131 AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGATATCCAGCTTC
*
2298993 ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGT
196 ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGA
2299058 TATCCAA
261 TATCCAA
*
2299065 CTCTTACTTCAATTTTAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
2299130 AAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
66 AAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
*
2299195 AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGATATCCAGCTTT
131 AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGATATCCAGCTTC
*
2299260 ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGA
196 ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGA
*
2299325 TATCCAG
261 TATCCAA
2299332 CT-TTACTTCAATTTCA
1 CTCTTACTTCAATTTCA
2299348 AGAAGATAGG
Statistics
Matches: 273, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
266 13 0.05
267 260 0.95
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (267 bp):
CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
AAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGATATCCAGCTTC
ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGA
TATCCAA
Found at i:2299161 original size:76 final size:76
Alignment explanation
Indices: 2299065--2299447 Score: 626
Period size: 76 Copynumber: 5.0 Consensus size: 76
2299055 TGTTATCCAA
*
2299065 CTCTTACTTCAATTTTAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
*
2299130 AAATGATGTTG
66 AAATGATCTTG
*
2299141 CTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
2299206 AAATGATCTTG
66 AAATGATCTTG
* * *
2299217 CTCTTACTTCAATTTCAGAGATAAAGATTTGA-TATCCAGCTTTACTTCAATTTCAAGAGGATAG
1 CTCTTACTTCAATTTCAGAGATAAAGACTT-ATTATCCAACTCTACTTCAATTTCAAGAGGATAG
2299281 GAAATGATCTTG
65 GAAATGATCTTG
* * * *
2299293 CTCTTACTTCAATTTCAGAGATAAAGATTTGA-TATCCAGCTTTACTTCAATTTCAAGAAGATAG
1 CTCTTACTTCAATTTCAGAGATAAAGACTT-ATTATCCAACTCTACTTCAATTTCAAGAGGATAG
2299357 GAAATGATCTTG
65 GAAATGATCTTG
*
2299369 CTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
*
2299434 AAATGATGTTG
66 AAATGATCTTG
2299445 CTC
1 CTC
2299448 CTTCTTCCTA
Statistics
Matches: 291, Mismatches: 14, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
76 291 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (76 bp):
CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
AAATGATCTTG
Found at i:2299236 original size:343 final size:343
Alignment explanation
Indices: 2298722--2299423 Score: 1298
Period size: 343 Copynumber: 2.0 Consensus size: 343
2298712 AATGATCTTG
*
2298722 CTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
*
2298787 AAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCTACTTCAATTTC
66 AAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
* *
2298852 AAGAGGATAGGAAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCT
131 AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTCT
*
2298917 ACTTCAATTTCAAGAGGATAGGAAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGA
196 ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGA
*
2298982 TATCCAGCTTCACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
261 TATCCAGCTTCACTTCAATTTCAAGAAGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
2299047 TAAAGACTTGTTATCCAA
326 TAAAGACTTGTTATCCAA
*
2299065 CTCTTACTTCAATTTTAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
*
2299130 AAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
66 AAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
* *
2299195 AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGATATCCAGCTTT
131 AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTCT
2299260 ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGA
196 ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGA
*
2299325 TATCCAGCTTTACTTCAATTTCAAGAAGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
261 TATCCAGCTTCACTTCAATTTCAAGAAGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
2299390 TAAAGACTTGTTATCCAA
326 TAAAGACTTGTTATCCAA
2299408 CTC-TACTTCAATTTCA
1 CTCTTACTTCAATTTCA
2299424 AGAGGATAGG
Statistics
Matches: 347, Mismatches: 12, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
342 12 0.03
343 335 0.97
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35
Consensus pattern (343 bp):
CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
AAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTCT
ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGA
TATCCAGCTTCACTTCAATTTCAAGAAGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
TAAAGACTTGTTATCCAA
Found at i:2299424 original size:419 final size:419
Alignment explanation
Indices: 2298646--2299447 Score: 1435
Period size: 419 Copynumber: 1.9 Consensus size: 419
2298636 AATGATTTTG
*
2298646 CTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAAAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGAAAGG
2298711 AAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
66 AAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
*
2298776 AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAGCTCT
131 AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTCT
* *
2298841 ACTTCAATTTCAAGAGGATAGGAAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGT
196 ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGA
* *
2298906 TATCCAGCTCTACTTCAATTTCAAGAGGATAGGAAATGATGTTGCTCTTACTTCAATTTCAGAGA
261 TATCCAGCTCTACTTCAATTTCAAGAAGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
* *
2298971 TAAAGATTTGATATCCAGCTTCACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTC
326 TAAAGACTTGATATCCAACTTCACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTC
2299036 AATTTCAGAGATAAAGACTTGTTATCCAA
391 AATTTCAGAGATAAAGACTTGTTATCCAA
* *
2299065 CTCTTACTTCAATTTTAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGAAAGG
*
2299130 AAATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
66 AAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
* *
2299195 AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGATATCCAGCTTT
131 AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTCT
*
2299260 ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGATTTGA
196 ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGA
*
2299325 TATCCAGCTTTACTTCAATTTCAAGAAGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
261 TATCCAGCTCTACTTCAATTTCAAGAAGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
* *
2299390 TAAAGACTTGTTATCCAAC-TCTACTTCAATTTCAAGAGGATAGGAAATGATGTTGCTC
326 TAAAGACTTGATATCCAACTTC-ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTC
2299448 CTTCTTCCTA
Statistics
Matches: 365, Mismatches: 17, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
418 2 0.01
419 363 0.99
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (419 bp):
CTCTTACTTCAATTTCAGAGATAAAGACTTATTATCCAACTCTACTTCAATTTCAAGAGGAAAGG
AAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTC
AAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGCTCT
ACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGA
TATCCAGCTCTACTTCAATTTCAAGAAGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGA
TAAAGACTTGATATCCAACTTCACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTACTTC
AATTTCAGAGATAAAGACTTGTTATCCAA
Found at i:2299522 original size:91 final size:90
Alignment explanation
Indices: 2299369--2299536 Score: 266
Period size: 91 Copynumber: 1.9 Consensus size: 90
2299359 AATGATCTTG
*
2299369 CTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAGACAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGG
2299434 -AAATGATGTTGCTCCTTCTTCCTA
66 AAAATGATGTTGCTCCTTCTTCCTA
* ** *
2299458 CTCTTACTTCAATTTCAGAGGGACGAAGGTTTGTTATCCAACTTTACTTCAATTTCAAGAGGATA
1 CTCTTACTTCAATTTCAGA--GACAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA
2299523 GGAAAATGATGTTG
64 GGAAAATGATGTTG
2299537 GATTGATGTG
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
89 19 0.27
91 41 0.58
92 11 0.15
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (90 bp):
CTCTTACTTCAATTTCAGAGACAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGG
AAAATGATGTTGCTCCTTCTTCCTA
Found at i:2311448 original size:58 final size:58
Alignment explanation
Indices: 2311381--2311635 Score: 298
Period size: 59 Copynumber: 4.4 Consensus size: 58
2311371 ATTCGGGGGA
* ** ** * *
2311381 GGGGGTAAAACGGTAATTTTGGTGAAATCGGGGTTAAAATTGGGATTTTGGAAAGTTC
1 GGGGGTAAAATGGTAATTTTTATGAAATCAAGGTTAAAAATGGAATTTTGGAAAGTTC
* * *
2311439 GGGGGTAAAATGGTAATTTTTTATAAAATTAGGGTT-AAAATGGAATTTTGGAAAGTTC
1 GGGGGTAAAATGGTAA-TTTTTATGAAATCAAGGTTAAAAATGGAATTTTGGAAAGTTC
* * * *
2311497 GAGGGTAAAATGGTAATTTTT-GGACCATCCAAGGTTAAAAATGGAATTTTGGAAAGTTT
1 GGGGGTAAAATGGTAATTTTTATGA-AAT-CAAGGTTAAAAATGGAATTTTGGAAAGTTC
* * *
2311556 AGGGGTAAAATGGTAATTTTTTATGAAATCGAGGTTAAAAATAGAATTTTGGAAAGTTC
1 GGGGGTAAAATGGTAA-TTTTTATGAAATCAAGGTTAAAAATGGAATTTTGGAAAGTTC
*
2311615 GGGGATAAAATGGTAATTTTT
1 GGGGGTAAAATGGTAATTTTT
2311636 GGACCATCTA
Statistics
Matches: 167, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
56 1 0.01
57 7 0.04
58 60 0.36
59 90 0.54
60 7 0.04
61 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (58 bp):
GGGGGTAAAATGGTAATTTTTATGAAATCAAGGTTAAAAATGGAATTTTGGAAAGTTC
Found at i:2311457 original size:29 final size:29
Alignment explanation
Indices: 2311381--2311634 Score: 141
Period size: 29 Copynumber: 8.7 Consensus size: 29
2311371 ATTCGGGGGA
*
2311381 GGGGGTAAAACGGTAATTTTGGTGAAA--TC
1 GGGGGTAAAATGGTAATTTT-G-GAAAGTTC
* *
2311410 GGGGTTAAAATTGG-GATTTTGGAAAGTTC
1 GGGGGTAAAA-TGGTAATTTTGGAAAGTTC
** *
2311439 GGGGGTAAAATGGTAATTTTTTATAAAATT-
1 GGGGGTAAAATGGTAA--TTTTGGAAAGTTC
* *
2311469 AGGGTTAAAATGG-AATTTTGGAAAGTTC
1 GGGGGTAAAATGGTAATTTTGGAAAGTTC
* * *
2311497 GAGGGTAAAATGGTAATTTTTGGACCA-TCC
1 GGGGGTAAAATGGTAA-TTTTGGA-AAGTTC
** * *
2311527 AAGGTTAAAAATGG-AATTTTGGAAAGTTT
1 GGGGGT-AAAATGGTAATTTTGGAAAGTTC
* *
2311556 AGGGGTAAAATGGTAATTTTTTATGAAA--TC
1 GGGGGTAAAATGGTAA--TTTT-GGAAAGTTC
* * *
2311586 GAGGTTAAAAATAG-AATTTTGGAAAGTTC
1 GGGGGT-AAAATGGTAATTTTGGAAAGTTC
*
2311615 GGGGATAAAATGGTAATTTT
1 GGGGGTAAAATGGTAATTTT
2311635 TGGACCATCT
Statistics
Matches: 170, Mismatches: 35, Indels: 40
0.69 0.14 0.16
Matches are distributed among these distances:
27 17 0.10
28 32 0.19
29 56 0.33
30 34 0.20
31 27 0.16
32 4 0.02
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.33
Consensus pattern (29 bp):
GGGGGTAAAATGGTAATTTTGGAAAGTTC
Found at i:2311635 original size:118 final size:117
Alignment explanation
Indices: 2311412--2311643 Score: 360
Period size: 117 Copynumber: 2.0 Consensus size: 117
2311402 GTGAAATCGG
* * * *
2311412 GGTTAAAATTGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTTATAAAATTAGGGTTAA
1 GGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTTTATAAAATGAGGGTTAA
*
2311477 AATGGAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTTGGACCATCCAA
66 AATAGAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTTGGACCATCCAA
* *
2311529 GGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTTATGAAATCGA-GGTTA
1 GGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTTTATAAAAT-GAGGGTT-
2311593 AAAATAGAATTTTGGAAAGTTCG-GGGATAAAATGGTAATTTTTGGACCATC
64 AAAATAGAATTTTGGAAAGTTCGAGGG-TAAAATGGTAATTTTTGGACCATC
2311644 TAGGGACCTA
Statistics
Matches: 105, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
117 58 0.55
118 47 0.45
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (117 bp):
GGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATGGTAATTTTTTATAAAATGAGGGTTAA
AATAGAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTTGGACCATCCAA
Found at i:2312672 original size:15 final size:15
Alignment explanation
Indices: 2312652--2312686 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
2312642 CTTTACGTGC
* *
2312652 GAACGACGGCCGAAG
1 GAACGACAGCCGAAA
2312667 GAACGACAGCCGAAA
1 GAACGACAGCCGAAA
2312682 GAACG
1 GAACG
2312687 CAGACCACGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.40, C:0.26, G:0.34, T:0.00
Consensus pattern (15 bp):
GAACGACAGCCGAAA
Found at i:2313663 original size:6 final size:6
Alignment explanation
Indices: 2313654--2313739 Score: 79
Period size: 6 Copynumber: 14.7 Consensus size: 6
2313644 AATTTTAAAC
* ** *
2313654 TAAATT TAAATT TAAA-A TAAATT TAAATT TAAAAA TGAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
* * *
2313701 TAAATT TAAA-G TAAATT TAATTT TAGAA-A TAAATT TAAA
1 TAAATT TAAATT TAAATT TAAATT TA-AATT TAAATT TAAA
2313740 AATCATTTTA
Statistics
Matches: 62, Mismatches: 14, Indels: 8
0.74 0.17 0.10
Matches are distributed among these distances:
5 10 0.16
6 51 0.82
7 1 0.02
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (6 bp):
TAAATT
Found at i:2313699 original size:41 final size:41
Alignment explanation
Indices: 2313654--2313739 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 41
2313644 AATTTTAAAC
*
2313654 TAAATTTAAATTTAAAATAAATTTAAATTTAAAAATGAATT
1 TAAATTTAAATTTAAAATAAATTTAAATTTAAAAATAAATT
* * *
2313695 TAAATTTAAATTTAAAGTAAATTTAATTTTAGAAATAAATT
1 TAAATTTAAATTTAAAATAAATTTAAATTTAAAAATAAATT
2313736 TAAA
1 TAAA
2313740 AATCATTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (41 bp):
TAAATTTAAATTTAAAATAAATTTAAATTTAAAAATAAATT
Found at i:2313702 original size:18 final size:18
Alignment explanation
Indices: 2313619--2313739 Score: 102
Period size: 18 Copynumber: 6.6 Consensus size: 18
2313609 TTTGGGCTTT
* *
2313619 TAAATTTTAATTTTAAAA
1 TAAATTTAAATTTAAAAA
* * * *
2313637 T-TATTTCAATTTTAAAC
1 TAAATTTAAATTTAAAAA
2313654 TAAATTTAAATTT-AAAA
1 TAAATTTAAATTTAAAAA
2313671 TAAATTTAAATTTAAAAA
1 TAAATTTAAATTTAAAAA
*
2313689 TGAATTTAAATTTAAATTTAAA
1 TAAATTTAAATTT-AA---AAA
* *
2313711 GTAAATTTAATTTTAGAAA
1 -TAAATTTAAATTTAAAAA
2313730 TAAATTTAAA
1 TAAATTTAAA
2313740 AATCATTTTA
Statistics
Matches: 85, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
17 30 0.35
18 35 0.41
19 5 0.06
22 4 0.05
23 11 0.13
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
TAAATTTAAATTTAAAAA
Found at i:2313720 original size:17 final size:17
Alignment explanation
Indices: 2313619--2313704 Score: 93
Period size: 17 Copynumber: 4.9 Consensus size: 17
2313609 TTTGGGCTTT
*
2313619 TAAATTTTAATTTTAAAA
1 TAAA-TTTAAATTTAAAA
* * *
2313637 T-TATTTCAATTTTAAAC
1 TAAATTT-AAATTTAAAA
2313654 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
2313671 TAAATTTAAATTTAAAAA
1 TAAATTTAAATTT-AAAA
*
2313689 TGAATTTAAATTTAAA
1 TAAATTTAAATTTAAA
2313705 TTTAAAGTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
16 3 0.05
17 35 0.59
18 21 0.36
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.45
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:2313725 original size:17 final size:17
Alignment explanation
Indices: 2313619--2313738 Score: 89
Period size: 17 Copynumber: 6.5 Consensus size: 17
2313609 TTTGGGCTTT
2313619 TAAATTTTAATTTTAAAA
1 TAAA-TTTAATTTTAAAA
* *
2313637 T-TATTTCAATTTTAAAC
1 TAAATTT-AATTTTAAAA
*
2313654 TAAATTTAAATTTAAAA
1 TAAATTTAATTTTAAAA
*
2313671 TAAATTTAAATTTAAAAATGAA
1 TAAATTT-AATTT--TAA--AA
* *
2313693 TTTAAATTTAAATTTAAAG
1 --TAAATTTAATTTTAAAA
2313712 TAAATTTAATTTTAGAAA
1 TAAATTTAATTTTA-AAA
2313730 TAAATTTAA
1 TAAATTTAA
2313739 AAATCATTTT
Statistics
Matches: 80, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
16 3 0.04
17 39 0.49
18 20 0.25
19 1 0.01
20 2 0.03
21 2 0.03
22 2 0.03
23 4 0.05
24 7 0.09
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.45
Consensus pattern (17 bp):
TAAATTTAATTTTAAAA
Found at i:2313734 original size:35 final size:36
Alignment explanation
Indices: 2313619--2313739 Score: 104
Period size: 35 Copynumber: 3.3 Consensus size: 36
2313609 TTTGGGCTTT
* * * *
2313619 TAAATTTTAATTTTAAAAT-TATTTCAATTTTA-AAC
1 TAAA-TTTAAATTTAAAATAAATTTAAATTTTAGAAA
* *
2313654 TAAATTTAAATTTAAAATAAATTTAAATTTAAAAATGAATT
1 TAAATTTAAATTTAAAATAAATTTAAATTT---TA-GAA-A
*
2313695 TAAATTTAAATTTAAAGTAAATTT-AATTTTAGAAA
1 TAAATTTAAATTTAAAATAAATTTAAATTTTAGAAA
2313730 TAAATTTAAA
1 TAAATTTAAA
2313740 AATCATTTTA
Statistics
Matches: 71, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
34 13 0.18
35 23 0.32
36 3 0.04
37 1 0.01
38 1 0.01
40 7 0.10
41 23 0.32
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (36 bp):
TAAATTTAAATTTAAAATAAATTTAAATTTTAGAAA
Found at i:2313750 original size:41 final size:41
Alignment explanation
Indices: 2313660--2313765 Score: 113
Period size: 41 Copynumber: 2.6 Consensus size: 41
2313650 AAACTAAATT
* **
2313660 TAAATTTAAAATAAATTTAAATTTAAAAATGAATTTAAATT
1 TAAATTTAAAATAAATTTAAATTTAAAAATAAATTTAAAAA
* * *
2313701 TAAATTTAAAGTAAATTTAATTTTAGAAATAAATTTAAAAA
1 TAAATTTAAAATAAATTTAAATTTAAAAATAAATTTAAAAA
* * * *
2313742 TCATTTTAAACTTAAATTAAAATT
1 TAAATTTAAA-ATAAATTTAAATT
2313766 GACCCAAAAT
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
41 43 0.81
42 10 0.19
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.42
Consensus pattern (41 bp):
TAAATTTAAAATAAATTTAAATTTAAAAATAAATTTAAAAA
Found at i:2313757 original size:24 final size:24
Alignment explanation
Indices: 2313671--2313763 Score: 75
Period size: 24 Copynumber: 3.7 Consensus size: 24
2313661 AAATTTAAAA
2313671 TAAATTTAAATTTAAAAATGAA-TT
1 TAAATTTAAATTTAAAAAT-AATTT
2313695 TAAATTTAAATTTAAAGTAAATTTAATTT
1 TAAATTTAAATTT-AA--AAA--TAATTT
* *
2313724 TAGAA-ATAAATTTAAAAATCATTT
1 TA-AATTTAAATTTAAAAATAATTT
*
2313748 TAAACTTAAA-TTAAAA
1 TAAATTTAAATTTAAAA
2313764 TTGACCCAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
23 8 0.14
24 24 0.41
25 2 0.03
26 3 0.05
27 3 0.05
28 4 0.07
29 12 0.21
30 2 0.03
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (24 bp):
TAAATTTAAATTTAAAAATAATTT
Found at i:2322780 original size:104 final size:104
Alignment explanation
Indices: 2322661--2322873 Score: 399
Period size: 104 Copynumber: 2.0 Consensus size: 104
2322651 TGTATTTACG
* *
2322661 TTTTAAGGGTTTTTTGTTTTTAGATTTCGGGGTTTAGTTTTATCTCAATCTTTTGTACTATTCTT
1 TTTTAAGGGTTTTTTGTTTTCAGATTTCGGGATTTAGTTTTATCTCAATCTTTTGTACTATTCTT
*
2322726 TCCTTTTCCATTATAATACAATTATTTTTACTCGTGATT
66 TCCTTTTCCATTATAATAAAATTATTTTTACTCGTGATT
2322765 TTTTAAGGGTTTTTTGTTTTCAGATTTCGGGATTTAGTTTTATCTCAATCTTTTGTACTATTCTT
1 TTTTAAGGGTTTTTTGTTTTCAGATTTCGGGATTTAGTTTTATCTCAATCTTTTGTACTATTCTT
2322830 TCCTTTTCCATTATAATAAAATTATTTTTACTCGTGATT
66 TCCTTTTCCATTATAATAAAATTATTTTTACTCGTGATT
2322869 TTTTA
1 TTTTA
2322874 TCCTTTTCAA
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 106 1.00
ACGTcount: A:0.20, C:0.12, G:0.12, T:0.56
Consensus pattern (104 bp):
TTTTAAGGGTTTTTTGTTTTCAGATTTCGGGATTTAGTTTTATCTCAATCTTTTGTACTATTCTT
TCCTTTTCCATTATAATAAAATTATTTTTACTCGTGATT
Found at i:2327370 original size:35 final size:35
Alignment explanation
Indices: 2327324--2327393 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
2327314 TTTTGGAGGA
2327324 TTGTTTGGGTAGAACATGACACCAGCAGTAATTGC
1 TTGTTTGGGTAGAACATGACACCAGCAGTAATTGC
2327359 TTGTTTGGGTAGAACATGACACCAGCAGTAATTGC
1 TTGTTTGGGTAGAACATGACACCAGCAGTAATTGC
2327394 AAGTGTTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (35 bp):
TTGTTTGGGTAGAACATGACACCAGCAGTAATTGC
Found at i:2340906 original size:29 final size:29
Alignment explanation
Indices: 2340870--2340935 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
2340860 ATCTTTATAT
* *
2340870 ATTTTAAAAGATTAAATTA-AATTTTTATC
1 ATTTTAAAAAATTAAAGTATAA-TTTTATC
2340899 ATTTTAAAAAATTAAAGTATAATTTTATC
1 ATTTTAAAAAATTAAAGTATAATTTTATC
*
2340928 ATTATAAA
1 ATTTTAAA
2340936 TATAAAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 31 0.94
30 2 0.06
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (29 bp):
ATTTTAAAAAATTAAAGTATAATTTTATC
Found at i:2346788 original size:16 final size:17
Alignment explanation
Indices: 2346758--2346796 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
2346748 GAGTGTTTTT
2346758 TTAAAATAATATTTTAA
1 TTAAAATAATATTTTAA
* *
2346775 TTAAAATTAT-TTTTAT
1 TTAAAATAATATTTTAA
2346791 TTAAAA
1 TTAAAA
2346797 ATGTCGAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTAAAATAATATTTTAA
Found at i:2348033 original size:58 final size:59
Alignment explanation
Indices: 2347943--2348118 Score: 221
Period size: 59 Copynumber: 3.0 Consensus size: 59
2347933 AAGAAGAAAC
** * * **
2347943 GATGAAATCGGGGTTGAAAACGGGACTTTTGGATA-CCCGAGGGTAAAATGGTAATTTT
1 GATGAAATCGGGGTTGAAAAATGGAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTT
* * *
2348001 GATGAAATCGGGGTTGAAAAATGGAATTTTGGAGAGTTTGGGGGTAAAATGGTAATTTTT
1 GATGAAATCGGGGTTGAAAAATGGAATTTTGGAAAGTTCGAGGGTAAAATGGTAA-TTTT
* **
2348061 GGTGAAATCGGGGTT-AAAAATAAAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTT
1 GATGAAATCGGGGTTGAAAAATGGAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTT
2348119 TGAAAGTTTC
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
58 35 0.34
59 49 0.48
60 18 0.18
ACGTcount: A:0.34, C:0.05, G:0.31, T:0.31
Consensus pattern (59 bp):
GATGAAATCGGGGTTGAAAAATGGAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTT
Found at i:2348057 original size:29 final size:29
Alignment explanation
Indices: 2347983--2348146 Score: 102
Period size: 30 Copynumber: 5.6 Consensus size: 29
2347973 GGATACCCGA
**
2347983 GGGTAAAATGGTAATTTT-GATGAAATCGG
1 GGGTAAAATGGTAATTTTGGA-GAGTTCGG
* *
2348012 GGTTGAAAAATGG-AATTTTGGAGAGTTTGG
1 GG--GTAAAATGGTAATTTTGGAGAGTTCGG
* **
2348042 GGGTAAAATGGTAATTTTTGGTGAAATCGG
1 GGGTAAAATGGTAA-TTTTGGAGAGTTCGG
* ** * *
2348072 GGTTAAAAAT-AAAATTTTGGAAAGTTCGA
1 GGGT-AAAATGGTAATTTTGGAGAGTTCGG
* *
2348101 GGGTAAAATGGTAATTTTTGAAAGTTTCGG
1 GGGTAAAATGGTAATTTTGGAGAG-TTCGG
* *
2348131 GGTTAGAAT-GTAATTT
1 GGGTAAAATGGTAATTT
2348147 CTTGAAATTT
Statistics
Matches: 103, Mismatches: 24, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
28 13 0.13
29 35 0.34
30 40 0.39
31 15 0.15
ACGTcount: A:0.34, C:0.02, G:0.30, T:0.34
Consensus pattern (29 bp):
GGGTAAAATGGTAATTTTGGAGAGTTCGG
Found at i:2348169 original size:29 final size:28
Alignment explanation
Indices: 2348084--2348177 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 28
2348074 TTAAAAATAA
*
2348084 AATTTTGGAAAG-TTCGAGGGTAAAATGGT
1 AATTTTTGAAAGTTTC-AGGGTAAAAT-GT
* *
2348113 AATTTTTGAAAGTTTCGGGGTTAGAATGT
1 AATTTTTGAAAGTTTCAGGG-TAAAATGT
* *
2348142 AATTTCTTGAAA-TTTTAGGGTCAAAATGC
1 AATTT-TTGAAAGTTTCAGGGT-AAAATGT
2348171 AATTTTT
1 AATTTTT
2348178 AGACTGTTTG
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
28 3 0.06
29 37 0.69
30 14 0.26
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.39
Consensus pattern (28 bp):
AATTTTTGAAAGTTTCAGGGTAAAATGT
Found at i:2348445 original size:162 final size:163
Alignment explanation
Indices: 2348249--2348591 Score: 519
Period size: 163 Copynumber: 2.1 Consensus size: 163
2348239 AGGCATCCAG
* * *
2348249 CAGTC-AAGGGACTAAATTGTAAATCTTAAAAAATTCTTGAGCCAATTTTGTAATTAAATAAAAG
1 CAGTCAAAGGG-CTAATTTATAAATCTTAAAAAATTCTTGAGCCAATTGTGTAATTAAATAAAAG
* *
2348313 TTGATTTAGGGATTAAATTAAAACAAATT-AAAAATGTCAGGGACTAAATACATAAATAAGCCAA
65 TTGATTTAAGGATTAAATTAAAACAAATTAAAAAATGACAGGGACTAAATACATAAATAAGCCAA
*
2348377 AAAGTGACACGTGGCAGCCTCTGGTGCAGTCAAA
130 AAAGTGACACGTGGCAACCTCTGGTGCAGTCAAA
* * * * *
2348411 CAGTCAAAGGGCTAATTTATAAATTTTGAAAAATTCTTGGGTCAGTTGTGTAATTAAATAAAAGT
1 CAGTCAAAGGGCTAATTTATAAATCTTAAAAAATTCTTGAGCCAATTGTGTAATTAAATAAAAGT
* * * *
2348476 TGATTTAAGGATTAAATTGAAATAAATTAAAAAATGACAGGGACTAGATGCATAAATAAGCCAAA
66 TGATTTAAGGATTAAATTAAAACAAATTAAAAAATGACAGGGACTAAATACATAAATAAGCCAAA
2348541 AAGTGACACGTGGCAACCTCTGGTGCAGTCAAA
131 AAGTGACACGTGGCAACCTCTGGTGCAGTCAAA
*
2348574 CAGTCAAAAGGCTAATTT
1 CAGTCAAAGGGCTAATTT
2348592 GAAAACCAAT
Statistics
Matches: 163, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
162 76 0.47
163 87 0.53
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.27
Consensus pattern (163 bp):
CAGTCAAAGGGCTAATTTATAAATCTTAAAAAATTCTTGAGCCAATTGTGTAATTAAATAAAAGT
TGATTTAAGGATTAAATTAAAACAAATTAAAAAATGACAGGGACTAAATACATAAATAAGCCAAA
AAGTGACACGTGGCAACCTCTGGTGCAGTCAAA
Found at i:2350232 original size:6 final size:6
Alignment explanation
Indices: 2350199--2350305 Score: 82
Period size: 6 Copynumber: 18.2 Consensus size: 6
2350189 CTTTTATTTT
* * * *
2350199 ATTTAA GTTTAA ATTT-C TTTTATA ATTTTA ATTTAA ATTTAA ATTT-A
1 ATTTAA ATTTAA ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA
**
2350246 AGGTAA ATTTAA ATAATTAA ATTTAA ATTTAA GA--TAA ATTTAA ATTTAA
1 ATTTAA ATTTAA AT--TTAA ATTTAA ATTTAA -ATTTAA ATTTAA ATTTAA
2350295 A--TAA ATTTAA A
1 ATTTAA ATTTAA A
2350306 ATCAATTTAA
Statistics
Matches: 79, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
4 5 0.06
5 9 0.11
6 55 0.70
7 4 0.05
8 6 0.08
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.48
Consensus pattern (6 bp):
ATTTAA
Found at i:2350239 original size:11 final size:11
Alignment explanation
Indices: 2350199--2350315 Score: 65
Period size: 11 Copynumber: 10.0 Consensus size: 11
2350189 CTTTTATTTT
2350199 ATTTAAGTTTAA
1 ATTTAA-TTTAA
**
2350211 ATTTCTTTTATA
1 ATTTAATTTA-A
2350223 ATTTTAATTTAA
1 A-TTTAATTTAA
2350235 ATTTAAATTTAA
1 ATTT-AATTTAA
** *
2350247 GGTAAATTTAA
1 ATTTAATTTAA
2350258 ATAATTAAATTTAA
1 AT--TT-AATTTAA
**
2350272 ATTTAAGATAA
1 ATTTAATTTAA
2350283 ATTTAAATTTAA
1 ATTT-AATTTAA
*
2350295 A-TAAATTTAA
1 ATTTAATTTAA
* *
2350305 AATCAATTTAA
1 ATTTAATTTAA
2350316 CCTCTAAATT
Statistics
Matches: 81, Mismatches: 16, Indels: 17
0.71 0.14 0.15
Matches are distributed among these distances:
10 8 0.10
11 32 0.40
12 24 0.30
13 8 0.10
14 9 0.11
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (11 bp):
ATTTAATTTAA
Found at i:2350269 original size:31 final size:32
Alignment explanation
Indices: 2350226--2350305 Score: 117
Period size: 31 Copynumber: 2.5 Consensus size: 32
2350216 TTTTATAATT
*
2350226 TTAATTTAAATTTAAATTTAAGGTAAATTTAAA
1 TTAA-TTAAATTTAAATTTAAGATAAATTTAAA
2350259 -TAATTAAATTTAAATTTAAGATAAATTTAAA
1 TTAATTAAATTTAAATTTAAGATAAATTTAAA
*
2350290 TTTAAATAAATTTAAA
1 -TTAATTAAATTTAAA
2350306 ATCAATTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
31 27 0.63
32 3 0.07
33 13 0.30
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (32 bp):
TTAATTAAATTTAAATTTAAGATAAATTTAAA
Found at i:2350307 original size:17 final size:17
Alignment explanation
Indices: 2350232--2350305 Score: 102
Period size: 17 Copynumber: 4.6 Consensus size: 17
2350222 AATTTTAATT
*
2350232 TAAATTTAAATTTAAGG
1 TAAATTTAAATTTAAGA
*
2350249 TAAATTTAAA--TAA-T
1 TAAATTTAAATTTAAGA
2350263 TAAATTTAAATTTAAGA
1 TAAATTTAAATTTAAGA
2350280 TAAATTTAAATTTAA-A
1 TAAATTTAAATTTAAGA
2350296 TAAATTTAAA
1 TAAATTTAAA
2350306 ATCAATTTAA
Statistics
Matches: 52, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
14 10 0.19
15 3 0.06
16 14 0.27
17 25 0.48
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (17 bp):
TAAATTTAAATTTAAGA
Found at i:2352386 original size:9 final size:9
Alignment explanation
Indices: 2352372--2352408 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
2352362 TATAGTTTAA
*
2352372 TATTCGATT
1 TATTCGAAT
2352381 TATTCGAAT
1 TATTCGAAT
*
2352390 TATTCGAGT
1 TATTCGAAT
2352399 TATTCGAAT
1 TATTCGAAT
2352408 T
1 T
2352409 CGAAAACTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:2352395 original size:18 final size:18
Alignment explanation
Indices: 2352372--2352408 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
2352362 TATAGTTTAA
*
2352372 TATTCGATTTATTCGAAT
1 TATTCGAGTTATTCGAAT
2352390 TATTCGAGTTATTCGAAT
1 TATTCGAGTTATTCGAAT
2352408 T
1 T
2352409 CGAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49
Consensus pattern (18 bp):
TATTCGAGTTATTCGAAT
Found at i:2358277 original size:12 final size:12
Alignment explanation
Indices: 2358250--2358288 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
2358240 ATCCAAAAAA
2358250 TAAATTGAAAAGT
1 TAAATT-AAAAGT
2358263 TAAAATTAAAA-T
1 T-AAATTAAAAGT
2358275 TAAATTAAAAGT
1 TAAATTAAAAGT
2358287 TA
1 TA
2358289 TCGATTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 9 0.38
12 5 0.21
13 5 0.21
14 5 0.21
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (12 bp):
TAAATTAAAAGT
Found at i:2365996 original size:15 final size:15
Alignment explanation
Indices: 2365976--2366005 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2365966 TGTTCAAATT
*
2365976 AAAGAATTATTAGAA
1 AAAGAATTAATAGAA
2365991 AAAGAATTAATAGAA
1 AAAGAATTAATAGAA
2366006 GAAACTAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.23
Consensus pattern (15 bp):
AAAGAATTAATAGAA
Found at i:2367962 original size:17 final size:17
Alignment explanation
Indices: 2367927--2367960 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
2367917 TTTTTCTGAA
*
2367927 TGTTTTTATCAATCATT
1 TGTTTTTATCAAACATT
2367944 TGTTTTTA-CAAACATT
1 TGTTTTTATCAAACATT
2367960 T
1 T
2367961 TGGGAGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (17 bp):
TGTTTTTATCAAACATT
Found at i:2371935 original size:13 final size:13
Alignment explanation
Indices: 2371903--2371928 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2371893 TTTATATTTA
2371903 ATAATTAAAACAC
1 ATAATTAAAACAC
2371916 ATAATTAAAACAC
1 ATAATTAAAACAC
2371929 GTGATTATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (13 bp):
ATAATTAAAACAC
Found at i:2372330 original size:25 final size:24
Alignment explanation
Indices: 2372302--2372441 Score: 79
Period size: 24 Copynumber: 6.1 Consensus size: 24
2372292 TTTAAAACAC
*
2372302 ATAAAAATAATTTTATACTAAATAT
1 ATAAAAATAATTTAATA-TAAATAT
* * *
2372327 ATAATATTACTTTAATATAAATAT
1 ATAAAAATAATTTAATATAAATAT
* *
2372351 -T-AAAATAATATTAAGATAATTAT
1 ATAAAAATAAT-TTAATATAAATAT
2372374 AT-AAAA-AATTT-A-ATAAATA-
1 ATAAAAATAATTTAATATAAATAT
2372393 A-AAAATGTATAAATTT-AT-TAAATAT
1 ATAAAA---AT-AATTTAATATAAATAT
*
2372418 -T-AAAATAATATAATATAAATAT
1 ATAAAAATAATTTAATATAAATAT
2372440 AT
1 AT
2372442 TTCTAAAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 30
0.69 0.08 0.23
Matches are distributed among these distances:
19 4 0.04
20 10 0.11
21 5 0.06
22 15 0.17
23 16 0.18
24 27 0.30
25 13 0.14
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (24 bp):
ATAAAAATAATTTAATATAAATAT
Found at i:2372369 original size:23 final size:22
Alignment explanation
Indices: 2372337--2372386 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
2372327 ATAATATTAC
*
2372337 TTTAATATAAATAT-TAAAATAA
1 TTTAAGATAAATATATAAAA-AA
*
2372359 TATTAAGATAATTATATAAAAAA
1 T-TTAAGATAAATATATAAAAAA
2372382 TTTAA
1 TTTAA
2372387 TAAATAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
22 5 0.21
23 14 0.58
24 5 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
TTTAAGATAAATATATAAAAAA
Found at i:2372404 original size:15 final size:16
Alignment explanation
Indices: 2372374--2372406 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
2372364 AGATAATTAT
*
2372374 ATAAAAAATTTAATAA
1 ATAAAAAATGTAATAA
2372390 ATAAAAAATGT-ATAA
1 ATAAAAAATGTAATAA
2372405 AT
1 AT
2372407 TTATTAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (16 bp):
ATAAAAAATGTAATAA
Found at i:2373003 original size:31 final size:29
Alignment explanation
Indices: 2372933--2373013 Score: 76
Period size: 30 Copynumber: 2.7 Consensus size: 29
2372923 TTTAATAATT
* * *
2372933 TATATTTTTATAAATTTTAAAAAATTAAA
1 TATAATTTTATTACTTTTAAAAAATTAAA
2372962 TCA-AATTTTTATTACTTTTAAAATAATTAAAA
1 T-ATAA-TTTTATTACTTTTAAAA-AATT-AAA
2372994 TATAATTTTATT-CTTATTAA
1 TATAATTTTATTACTT-TTAA
2373014 TTTAAAATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
29 2 0.05
30 19 0.44
31 16 0.37
32 6 0.14
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (29 bp):
TATAATTTTATTACTTTTAAAAAATTAAA
Found at i:2377488 original size:58 final size:58
Alignment explanation
Indices: 2377398--2377653 Score: 252
Period size: 58 Copynumber: 4.4 Consensus size: 58
2377388 TTTTTGTCAA
*
2377398 AAAAAATTCAAAATTTTTTTGTGTTGGCCATCAAATGGCCGACAGCCCCTATTCTTGG
1 AAAAAATTCAAAATTTTTTTGTGTTGGCCATCAAATGGCCGACACCCCCTATTCTTGG
* * * **
2377456 AAAATATTCAAAATTTTTTTGTATTGGCCATCAAATGGCCGATACCCCCTA-T-TTCA
1 AAAAAATTCAAAATTTTTTTGTGTTGGCCATCAAATGGCCGACACCCCCTATTCTTGG
* * ** * * * *
2377512 AAAAAATT-TACATTTTTGGGTGTTAGCCATCAAATGGCCGACACCCTCTTTTCTCGAG
1 AAAAAATTCAAAATTTTTTTGTGTTGGCCATCAAATGGCCGACACCCCCTATTCTTG-G
* * *
2377570 AAAAAAAATTC-AATTTTTTTTGGTGTTGGCCATCAAATGGCCGACACCCCCTTTTTCTCGAG
1 --AAAAAATTCAAAATTTTTTT-GTGTTGGCCATCAAATGGCCGACACCCCC-TATTCTTG-G
2377632 AAAAAAATTTC-AAATTTTTTTG
1 -AAAAAA-TTCAAAATTTTTTTG
2377654 GTGTCAACCA
Statistics
Matches: 163, Mismatches: 26, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
55 33 0.20
56 10 0.06
57 2 0.01
58 47 0.29
60 14 0.09
61 35 0.21
62 22 0.13
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.35
Consensus pattern (58 bp):
AAAAAATTCAAAATTTTTTTGTGTTGGCCATCAAATGGCCGACACCCCCTATTCTTGG
Found at i:2377619 original size:116 final size:113
Alignment explanation
Indices: 2377418--2377626 Score: 287
Period size: 116 Copynumber: 1.8 Consensus size: 113
2377408 AAATTTTTTT
* * *
2377418 GTGTTGGCCATCAAATGGCCGACAGCCCCTATTCTTGGAAAATATTCAAAATTTTTTTGTATTGG
1 GTGTTAGCCATCAAATGGCCGACAGCCCCTATTCTCGGAAAAAATTCAAAATTTTTTTGTATTGG
*
2377483 CCATCAAATGGCCGATACCCCCTATTTCAAAAAAATTTACATTTTTGG
66 CCATCAAATGGCCGACACCCCCTATTTCAAAAAAATTTACATTTTTGG
* *
2377531 GTGTTAGCCATCAAATGGCCGACA-CCCTCTTTTCTCGAGAAAAAAAATTC-AATTTTTTTTGGT
1 GTGTTAGCCATCAAATGGCCGACAGCCC-CTATTCTCG-G--AAAAAATTCAAAATTTTTTT-GT
* *
2377594 GTTGGCCATCAAATGGCCGACACCCCCTTTTTC
61 ATTGGCCATCAAATGGCCGACACCCCCTATTTC
2377627 TCGAGAAAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
112 3 0.04
113 30 0.36
114 1 0.01
115 9 0.11
116 40 0.48
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (113 bp):
GTGTTAGCCATCAAATGGCCGACAGCCCCTATTCTCGGAAAAAATTCAAAATTTTTTTGTATTGG
CCATCAAATGGCCGACACCCCCTATTTCAAAAAAATTTACATTTTTGG
Found at i:2377811 original size:61 final size:59
Alignment explanation
Indices: 2377672--2378028 Score: 310
Period size: 61 Copynumber: 6.0 Consensus size: 59
2377662 CATTTCGAGA
* * * * *
2377672 AAAAAAATTTGAAATTTTTTTCGAGAAAAGGAGGTGTCAACCATTTGATGACCAACACC
1 AAAAAATTTTGAATTTTTTTTCGAGAAAAGGGGGTGTCGACCATTTAATGACCAACACC
* * ** **
2377731 AAAAAAAATTTGAAATTTTTTTCTCTAGAAAAGGGGGTGTCGGTCATGCAATGACCAACACC
1 -AAAAAATTTTG-AATTTTTTT-TCGAGAAAAGGGGGTGTCGACCATTTAATGACCAACACC
** * * *
2377793 AAAAAATTTTGAATTTTTTTCTTAAAAAAAAGGGGGTGTCGACCATTTGATGGCCAACACC
1 AAAAAATTTTGAA-TTTTTT-TTCGAGAAAAGGGGGTGTCGACCATTTAATGACCAACACC
* * * *
2377854 AAAAAATTTTGAATTTCTTTTTTCGAGAATAGGGAGTGTCGGCCATTTAATGGCCAACACC
1 AAAAAATTTTGAA-TT-TTTTTTCGAGAAAAGGGGGTGTCGACCATTTAATGACCAACACC
** * * *
2377915 CCAAAA-TGT-AAATTTTTTTCGAGAAAAGGGCGTGTCGACCATTT-A-G-CCAACACC
1 AAAAAATTTTGAATTTTTTTTCGAGAAAAGGGGGTGTCGACCATTTAATGACCAACACC
* * * * * * **
2377969 AAAAAATTTTAAATTTTTTTTTGACAAAAAAGAGGTGTCGGCCATTGCATGACCAACACC
1 AAAAAATTTTGAATTTTTTTTCGA-GAAAAGGGGGTGTCGACCATTTAATGACCAACACC
2378029 CCAAATTTTT
Statistics
Matches: 242, Mismatches: 44, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
54 12 0.05
55 3 0.01
56 12 0.05
57 44 0.18
58 2 0.01
59 3 0.01
60 23 0.10
61 107 0.44
62 36 0.15
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (59 bp):
AAAAAATTTTGAATTTTTTTTCGAGAAAAGGGGGTGTCGACCATTTAATGACCAACACC
Done.