Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 70 of 135
Found at i:21107768 original size:856 final size:851
Alignment explanation
Indices: 21086768--21108116 Score: 16748
Period size: 853 Copynumber: 25.0 Consensus size: 851
21086758 GAGCTTTTGT
* * * * * *
21086768 AAAGTTTTACAAGTTTGAAAATTCGTCCAATAACCAAGAGAGAAACAATTTTCACGTAAATAAGT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAAGT
* * * * * * *
21086833 GTTTAATTCAAAGGCCAAAAGTTTTTTACAAAATGGCAAACTATTTAGACCAATTGATGCGATTT
64 ATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA--AAATGATGCAATTT
* ** * * * * *
21086898 CCCGAGTGTGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGCCTTGAATACTGTAAGGAACC
127 TCCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACC
* ** * *
21086963 GATGTTATAAATGAACTCGTAAAAGTTTGACAAGTTTC-AAAGTTTGTCCAAGAACCAAGAGAGA
192 GAAGTTATAAA-GAACTCGTAAAAGTTTGACAAG-TTCGAAAGTTCATACAAGAACTAA-AGAGA
* * * ** *
21087027 AACAATTCTCACGTAAAAAAGTTTTTAATTTAAAGGCAAAAACTTGTTTACAAAATGACAAACAA
254 AACAATTCTCAAGTAAATAAGTTTTTAATTCAAAAAC-AAAACTTGTTTACAAAATGACAAACTA
* * * * * * * * *
21087092 TTTAGA-AAAATGATGCAATTTTCCGAGCATAGAATGTT-TAGTAAGTTGCTCGAAGGAATGTAT
318 TTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
* * * * * *
21087155 CGTCTTGAA-ACTATAGGGAACCGGAGTTATAAAAGAACTCATAAAAGTTTGAAAAGTTCGGAAG
382 -GTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* * * *
21087219 TTTGTCCAAGAACC-AAGAGAAACAATTCTCACGTAAATAAGATTTTGATTCAAAGACCAAAAGT
446 TTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAAGAACAAAACT
* * ** * *
21087283 TGTTTCCAAAATGACAAACTATTTAGACCAAATGCTGATATTTCCCGAGAATGGAATG-TTCGAA
510 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAG-A
* * * * * *
21087347 AAATTGCCCGAAGGAATGGATCATCTTGAATACTTTAAGAAACCGAAGTTATGAAAGAACTGGTA
574 AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCGTA
* * *
21087412 AAAGTTTGACAAGTTCGAAAGTTCGTCCAAGACCCAAGAGAGAAATAATTCTCACGTAAATAAGT
639 AAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACATAAATAAGT
* * * * * * * * *
21087477 TTTTAATTCAAACAACAAAACCTT-TTTCCAAAATGACAACCTATTTAAACCAAGTGATACGATT
702 TTTTAATCCAAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCCATT
* * * * * * * *
21087541 TCCCTAGCATGAAATGTACTGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTACGGAAC
766 TCCCGAGAATGGAATGTTC-AAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* *
21087606 TGAAATTATAAAAGAACTCGTA
830 CGAAGTTATAAAAGAACTCGTA
* ** * * * *
21087628 AAAGTTTGA-AA------AA-TT-ATAAAAGAA-C-TGA-TAATAATTGTCACGTAAATAAGTTC
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAG-T-
* * * * *
21087681 TTTTAATTCAAACACAAAAATTTGTTTACAAAATAACAAACTATTTA-ACCAAATGATGCAATTT
64 ATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA--AAATGATGCAATTT
* * * * * * * *
21087745 CCCAAGCATGGAATG-TTCGAAAAATTG-TCGAAGGAGTGGATCGTCTTGAATTCAT-TAAGGAA
127 TCCGAGCATAGAATGTTTAG-AAAGTTGCTCGAAGGAATGTATCGTCTTGAATAC-TGTAAGGAA
* * * * * *
21087807 CCAAAGTTATAAAATAACCCGTAAAAG-TT--C-----CG-AAGTTCTTCCAAGAACCAAGAGAG
190 CCGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAACTAA-AGAG
* * * * * *
21087863 AAACAATTCTCATGTAAAAAAGTTCTTTTAATTCAAACACAAAAACTTGTCTACAAAATTAGAAA
253 AAACAATTCTCAAGTAAATAAG-T-TTTTAATTCAAAAAC-AAAACTTGTTTACAAAATGACAAA
* * * * * * *
21087928 CTATTTATACCAAATGATGCGATATCCCGA-ATGTGGAAAGTTCAAAAAATTGCTCGGAGGAGTG
315 CTATTTAGACCAAATGATGCGATTTCCCGAGA-ATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * *
21087992 GATTGTCTTGAATACTTTAAGGAACCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
379 GA-TGTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
* * * * * * *
21088057 AAGTTCGTCCAAGAACC-AAGGGAGAATAATCCTCAGGTAAATAAGGGTTTAATTGAAAGACCAA
443 AAGTTCGTCCAAGAACCAAAGAGA-AACAATTCTCACGTAAATAA-GTTTTAATTCAAAGAACAA
* * * ** **
21088121 AAGTTGTTTACAAAATGACACACTATTTATACCAAATGATATGATTTCCCGA--AT-G--T-TCG
506 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTT
* * **
21088180 A-AAAATTGCTCGAAGGAATGGATCGCCTTGAATACTGTAAGGAACC-AAGCTATAAAAGAACTC
571 AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTC
** * * * * * *
21088243 GTAAATTTTTGAAAAGTTTGGAAGTTCGTCCAACAGCCAAGAGAAAC-ATTCTCACGTAAATAAG
636 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACATAAATAAG
*** ** * * * **
21088307 TTTTCGTTTTAAAGACCAAAACTTGTTTAAAAAATGA-AAACTATTTAAACTAAATGATGTGATT
701 TTTTTAATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCCATT
* * *
21088371 TCTCGAGAATGGAATATTCAAAAATTGCTC-ATAGGAATGGATCGTCTTGAATACTTTAAGGAAC
766 TCCCGAGAATGGAATGTTCAAAAAATGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGAAC
* *
21088435 CGAAATTATAAAACAACTCGTA
830 CGAAGTTATAAAAGAACTCGTA
* * *
21088457 AAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC-CA-AGAGAAACAATTCTCACGTAAATAAGT
* * * * *
21088522 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATACGAGTT
64 ATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA--AAATGATGCAATTT
* * * * * * * *
21088587 CCCGAGCATGGAATGTTTAGAAAATTGCTCGAATGAAAGGATCGTCTTGAATACTTTAAGGAATC
127 TCCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACC
* * * * * * *
21088652 GAAGTTGTAAACGAACTCGTAAAAGTTGGACAAGTTCAAAAGTTCGTCCAAGAA-TTAAGGGAAA
192 GAAGTTATAAA-GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAACTAAAGAGAAA
* * * * * *
21088716 CAATTCTCACGTAAATAAGTTTTTGATTTAAAGACCAAAACTTGTTTACAAAATGGCAATCTATT
256 CAATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACAAAATGACAAACTATT
* * * * *
21088781 TAGACCAAATTATGCGATTTCCCGAGAATGTAATGTTC-AGAAAATTGCTCGAAGGAGTCGATCA
320 TAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT-G
* * * * *
21088845 TCTTGAATACTTTAAGGAA-TCGATGTTATAAAAGAATTCTTAAAAGTTTGACAAGTTCAGAAGT
383 TCTTGAATACTTTATGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * * * *
21088909 TCGTCCAAGAACC-AAGAGAAGCAATTCTCACGTAAAAAAGTTTTTGATTCAAAGACCAAAACTA
447 TCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAAGAACAAAACTT
** * * * * ** *
21088973 GTTTACAAAATGACAAACTAAATAGACAAAATGATGAGACTTCCCAATAATGGAATGTTCAGAAA
511 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAA
*
21089038 ATTGCTCAAAGGAATGGA---TC--G---------A--AA--G----------AG--CTCGT-AA
576 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCGTAAA
* * * * * * *
21089072 AGTTTTACAAGTTCGGAAA-TTCGTCCAATAACCAAGAGAGAAAAAATTCTCACGTAAAGAAATG
641 AGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACATAAATAAGTT
* * * * * *
21089136 TTTAATTCAAAGACCAAAAGTTTTTTACAAAAGGACAAACTATTTAGACCAATTGATGCGATTTC
703 TTTAATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCCATTTC
** * * *
21089201 CCGAGCGTGGAATGTTCAGAAAATTGCTCCAAGGAATGGATCGTCTTGAATACTGTAAGGAACCG
768 CCGAGAATGGAATGTTCA-AAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG
* * *
21089266 AAGTTATAAATGAACACATA
832 AAGTTATAAAAGAACTCGTA
* ** *
21089286 AAAGTTTGACAAGTTTGGAAGTTTATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAAGT
* * * * * * *
21089351 TTTTAATTTAAAGGCAAAAACTT-TTTACAAAATGACAAACAATTTAGAAAAATAATGCGATTTT
64 ATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG-AAAATGATGCAATTTT
* * * * * *
21089415 TCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCATCTTGAA-GCTGCAGGGAATCG
128 CCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACCG
* * * * ** * *
21089479 GAGTTATAAAAGAACTCATAAAAGTTTGAAAAGTTCGGAAGTTTGTCCAAGAAC-CAAGAGAAAC
193 AAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAACTAAAGAGAAAC
* * * *
21089543 AATTCTCACGTAAATAAGTTTTTGATTCAAATACCAAAACTTGTTTCCAAAATGACAAACTATTT
257 AATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACAAAATGACAAACTATTT
* * * * * *
21089608 AGACCAAATGCTGCTATTTCCCGAGAATGAAATGTTCAAAAAATTGCTCAAAGGAATGGATCATC
321 AGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT-GTC
* * * * * *
21089673 TTGAATACTTTAAGAAACCGAAGTTATGAAAGAACTGGTAAAAGTTTGACAAGTTCGAAAGTTCG
385 TTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCG
* *
21089738 TCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAACAACAAAACCTT-
450 TCCAAGAACCAA-AGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAAGAACAAAA-CTTG
* **
21089802 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAAT-TCGA-AAAA
512 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAAA
* * * * *
21089865 TAGCTCGAAGGAATGGATTGACTTGAATACTTTATGGAACCGAAATTATAAAAGAACTTGTAAAA
577 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCGTAAAA
* * * * * *
21089930 GTTTGAGAAGATCGAAAGTTCATCCAAGAACTAAAAGAGAAACAATTCTCACGTAAATAAGTGTT
642 GTTTGACAAGTTCGAAAGTTCGTCCAAGAAC--CAAGAGAAACAATTCTCACATAAATAAGTTTT
* * * * *
21089995 TAATTCAAAGACCAAAAGTTGTGTACAAAATAACAAACTATTTAGACCAAATGATGCGATTTCCC
705 TAATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCCATTTCCC
* * * *
21090060 GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGAAACCAAA
770 GAGAATGGAATGTTC-AAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
21090125 GTTATAAAAGAACTCATA
834 GTTATAAAAGAACTCGTA
* * *
21090143 AAAGTTTGAAAAGTTC-AATAGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAG
1 AAAGTTTGACAAGTTCGGA-AGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAAG
* * * * * *
21090206 TTTTTAATCCAAAGACCAAAAGTTTTTTTTTTTACAAAATGACACACTATTTATACCAAATGATG
63 TATTTAATTCAAAGACCAAAA-----CTTGTTTACAAAATGACAAACTATTTAGA--AAATGATG
* * * *
21090271 TC-A-TTTCCTGAGCAT-GTAATGTTTAGAAAATTGCTCGAAGGAATGGATTGTCTTGAATAATG
121 -CAATTTTCC-GAGCATAG-AATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTG
* * * * * * * *
21090333 TAAGGAACCAAAGTTATAAAAGAAATCGGAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGCAC-
183 TAAGGAACCGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAACT
* * * * ** *
21090397 CAAGAGAAACAATTCTCATGTAAATAAATTTTTGATTCAAAGGGCAAAACTTGTTTCCAAAATGA
247 AAAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACAAAATGA
* * *
21090462 -AGAACTATTTAGACCAAATGCTGCTATCTCCCGAGAATGGAATGTTC-AGAAAATTGCTCGAAG
311 CA-AACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGA-AAAATTGCTCGAAG
* * * * * *
21090525 GCATGGATCATCTTGAATGCTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAG
374 GAATGGAT-GTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * *
21090590 TTCGAAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAATTCCCAA
438 TTCGGAAGTTCGTCCAAGAACCAA-AGAGAAACAATTCTCACGTAAATAAG-TTTTAATT--C-A
*
21090655 GAGAGAAACAATTCTTACGTAACTAAGTTTTTAATTCAATCAACAAGACTTTTTTACAAAATAAC
498 -A-AG-AAC-A-----A---AAC------------T---T------G-----TTTACAAAATGAC
*
21090720 AAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGGAATGTTTTA-AAAATTGATCGAAGGA
525 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTTAGAAAATTGCTCGAAGGA
* * *
21090783 ATGGATCGTCTTGAATACATTATGGAACTG-AATTATAAAAGAACTCGTAAAAAGTTTGACAAGT
589 ATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCGT-AAAAGTTTGACAAGT
* * * * * * * *
21090847 TCGGAAGTTCGTCCAAGAACCAAAATAGAAACAACTCTCACGTAAATAAGTATGTAATTCGAAGA
653 TCGAAAGTTCGTCCAAGAACC--AAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGA
* * * * * * ** * *
21090912 CCAAAACTTTTTTACAAAATGACAAACAATTTAGA-AAAATGATACGATTTTCTAAGCATAGAAT
716 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCCATTTCCCGAGAATGGAAT
* * ** * * *
21090976 ATTTAGAAAGTTGCTCCAAGGAATGTATCGTCTTGAATA-TTGTAAGGAACCGAATTTATAAAAG
781 GTTCA-AAAAATGCTCGAAGGAATGGATCGTCTTGAATACTT-TAAGGAACCGAAGTTATAAAAG
21091040 AACTCGTA
844 AACTCGTA
* * ** * * * *
21091048 AAATTTTGATAAGTTCAAAAGTTTGTCTAAGAACCAAGAGAGAAACAATTCTCATGTAAAAAAGT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAAG-
* * * * * * * *
21091113 TCTTTTAATTCAAACACAAAAACTTGTTCACAAAATGATAAACTATTTATACCAAATAATGCGAT
63 T-ATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA--AAATGATGCAAT
* * * * * *** * * * * *
21091178 TTCCCGAACATGGAATG-TTCGAAAAATAATTTGAAGGAGTGGATTGTCTTGAATACTTTAAGGA
125 TTTCCGAGCATAGAATGTTTAG-AAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGA
* ** * *
21091242 ACCGAAGTTGTAAAAGAACTCGTAAAAGTTTGATTAGTTCGAAAGTTCAT-CAAAGAAC-CAAGG
189 ACCGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATAC-AAGAACTAAAGA
* * * * * *
21091305 GAGAACAATCCTCACGTAAATAAGTATTTAATTCAAAGACTAAAAGTTGTTTACAAATTGACAAA
252 GA-AACAATTCTCAAGTAAATAAGTTTTTAATTCAAAAAC-AAAACTTGTTTACAAAATGACAAA
* ** * * *
21091370 CTATTCAGAGTAAATGATGCAATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
315 CTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * * * * * * *
21091435 ATCGTCTTTAATACTATAAGGAAC-CAAGTTATAAAATAACTCATAAATGTTTGAAAAGTTCGGA
380 AT-GTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * * * *
21091499 AGTTCATCCAAGAGCC-AAGAGAAACAATTCTCACGTAAATAAGTTTTCATTTTTAAAGACCAAA
444 AGTTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAGTTTT-A-ATTCAAAGAACAAA
* * * * *
21091563 ACTTGTTTACAAAATGAAAAAACTATTTAGACTAAATGATGCGATTTCCCGAGAATAGAATGTTC
507 ACTTGTTTACAAAATG-ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTT
* *
21091628 A-AAAATTGCTC-AATGGAATGGATCGTTTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
571 AGAAAATTGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACT
* * * * *
21091691 CGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCGAGAGAGAAACAACTCTCACGTAAAT
635 CGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACATAAAT
* * * ** *
21091756 AAGTATTTAATTCAAAGACC-AAACTTGTTTACAAAAGGACAAA-TAATTTA-AAAAAATGATGT
698 AAGTTTTTAATCCAAAGACCAAAACTTGTTTACAAAATGACAAACT-ATTTAGACCAAATGATGC
* ** * * * ** * * * * *
21091818 GATTTTTCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTACCATCTTGAATAATGTAAG
762 CATTTCCCGAGAATGGAATGTTCA-AAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
21091883 GAACCGAAGTTATAAAAGAACTCGTA
826 GAACCGAAGTTATAAAAGAACTCGTA
* * * *
21091909 AATGCTTGACAAGTTCGGAAGTTCATCCAAGAACCACGAGAAACAATTCTCACGTAAAT---T-T
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTAT
* * * * * ** *
21091970 TTGATTTAAAGACCAAAACTTGTTTCCAAAATGACAAACTTTTTAGACCAAATGCTGTTA-TTCC
66 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA--AAATGATGCAATTTTC
* ** * * * * * * * * *
21092034 CGAGAACGGAATGTTCAAAAAATTGATCAAAGGAATGGATCATCTTGAATA-TTTAAGGAATCGA
129 CGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACCGA
* * * * *
21092098 AGTTATGAAAGAACTCATAAAAGTTTGACCAGTTCGAAAGTTCATCCAAGAACCAAGAGACAAAA
194 AGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAACTAA-AGA-GAAA
* * * * * *
21092163 CAACTCTCACGTAAATAAG-TTTTAATTCAAACAATAAAACTTTTTTATAAAATGACAAACTTTT
256 CAATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACAAAATGACAAACTATT
* * * * * * *
21092227 TAGACCAAATAATGCCATTTCCC-ATGCATGAAATATTC-AGAAAACTGCTCAAAGGAATGGATC
320 TAGACCAAATGATGCGATTTCCCGA-GAATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT-
* *
21092290 GTCTTGAATACTTTATGGAACTGATA-TTATAAAA-AAGCTCGTAAAAGTTTGACAGGTTTGGAA
382 GTCTTGAATACTTTATGGAACTGA-AGTTATAAAAGAA-CTCGTAAAAGTTTGACAAGTTCGGAA
* * * *
21092353 GTTCATCCAAGAACCAAAAGAGAAACAATTCTCACATAAATGAGTATTTAATTCAAA-TACAAAA
445 GTTCGTCCAAGAACC-AAAGAGAAACAATTCTCACGTAAATAAGT-TTTAATTCAAAGAAC-AAA
* * ** *** *
21092417 ACTTGTTTACAAAAGGACAAACAATTTAGAAAAAATGATGCGATTTTTTGAGCATAGAATGTTTA
507 ACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTA
** * ** ** * *
21092482 GAATGTTGCTCGAAGGAATGTATCGTCTTGAATACGGTAAGGAATAGAAGTTATAAAAGAACACG
572 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCG
* * * *
21092547 TAAATGTTTGACAGGTTC-AGAAGTTCATCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAG
637 TAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACATAAATAAG
* * * * *
21092611 TTTTTTATTCAAAGACCAAAATTTGTTT-CAAAATGACAAACT-TCTT-GAACCAAATGCTGCTA
701 TTTTTAATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT-TTAG-ACCAAATGATGCCA
* * *
21092673 TTTCCCGAGAATGGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTCAATACTTTAAGGA
764 TTTCCCGAGAATGGAATGTTCA-AAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** * *
21092738 ATTGAAGTTATGAAAGAACTCATA
828 ACCGAAGTTATAAAAGAACTCGTA
* * ** ** *
21092762 AAATTTTGACCAGTTCAAAAGTTCGTGTAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CCA-AGAGAAACAATTCTCACGTAAATAAGT
* * * * * * *
21092827 TTTTAATTCAAACAACAAAACTTTTTTACAAAATGACACATTATTTATATAAAATGATGTC-A-T
64 ATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA-TT-TAGAAAATGATG-CAATT
* * * *
21092890 TTCCTGATCAT-GTAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAATGTAAGGA
126 TTCC-GAGCATAG-AATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGA
* * * * * *
21092954 ACCAAAGTTATAAAACAACTCGTAAAAGTTTGACCAGTTCGGAAGTTCGTCCAAGAAC-AAAGAG
189 ACCGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAACTAAAGAG
* * * * *
21093018 AAGCAATTCTCACGTAAATAA-ATTTTGATTCAAAGACCAAAACTTGTTT-CTAAAATGA-AGAA
253 AAACAATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTAC-AAAATGACA-AA
* * * *
21093080 CTATTTAGACCAAATGCTACTATCTCCCGAGAATGGAATGTTC-AGAAAATTGCTCGAAGGAATG
315 CTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGA-AAAATTGCTCGAAGGAATG
* * * *
21093144 GATCGTCTTGAATACTTTA-GG-AGTCGAAGGTATCAAAGAACTCGTAAAAGTTTGACCAGTTC-
379 GAT-GTCTTGAATACTTTATGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * *
21093206 AAAATTCGT-------CC-AAGAGAAACAATTCTCACGTAAA-AAGTGTTTAATTCAAAGACCAA
442 GAAGTTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAGT-TTTAATTCAAAGAACAA
* * * *
21093262 AAGTTATTCACAAAATAACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTT
506 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTT
* * * * *
21093327 -GAAAAATTGCTCTAAGGAATGGATCGTCTTGAATACTCTAAGAAACTGAAGTTATAAAAGAACT
571 AG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACT
* * * * * *
21093391 CATAAAAGTTTGAAAAGTTCGGAAGTTCGTCAAAGAACCAAAAGAGAAACAATTTTCACGT-AAT
635 CGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC--AAGAGAAACAATTCTCACATAAAT
* * ** * * * * * *
21093455 AAGTGTTTAATCCAAAGATCAAAGTTTTTTTACAGAATGACACACTATTTATACAAAATGATGTC
698 AAGTTTTTAATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCC
* * * * * * *
21093520 ATTTCCCGAGCATGGAATGTTTAGAAAATTGCTCGATGGAATGGATTGTCTTGAATAATGTAAGG
763 ATTTCCCGAGAATGGAATGTTCA-AAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
21093585 AACTGAAGTTATAAAAAAAACTCAT-
827 AACCGAAGTTAT-AAAAGAACTCGTA
* * * *
21093610 AAAGTTTGACAAGTTCGGAAGTTCGTTCAACAACCAAGAGAAACAATTCTCACGTAAATAAATTT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTAT
* * * * *
21093675 TTGATTCACAGACCAAAACTTGTTTCCAAAATGA-AGAACTATTTAGACCAAATGATGCTATCTT
66 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACA-AACTATTTAGA--AAATGATGCAATTTT
* * * * * * * * * *
21093739 CCGAGAAT-GAAATGTTCATAAA-ATGCT-GGAGAAATGGATCGTCTTGAATGCTTTAAGGAGCC
128 CCGAGCATAG-AATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACC
* * * *
21093801 GAAGTTATGAAAGAACTCGTAAAAGTTTGATC-AGTTCAAAAGTTTATCCAAGAACCAAGAGAGA
192 GAAGTTAT-AAAGAACTCGTAAAAGTTTGA-CAAGTTCGAAAGTTCATACAAGAACTAA-AGAGA
* *
21093865 AAC-ATTCTC----ACA-AAGTTTTTAATTCAAAAAACAAAACTTTTTTACAAAATGACAAACTA
254 AACAATTCTCAAGTAAATAAGTTTTTAATTC-AAAAACAAAACTTGTTTACAAAATGACAAACTA
* * * *
21093924 TTTAGACCAAAATGATGTGATTTCCCAAGCATGAAATGTTCG-AAAATTGCTCGAAGGAATGGAT
318 TTTAGACC-AAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * * *
21093988 CGTCTTGAGTACTCTA-GAAACCGAAGTTATAAAAGAACTCGTAAAAGTTTG---A----GGAAC
382 -GTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* * * *
21094045 TTCGTCAAAGAACCAATAGAGAAACAATTCTCACGT-AATAAGTGTTTAATCCAAAGACCAAAAG
446 TTCGTCCAAGAACCAA-AGAGAAACAATTCTCACGTAAATAAGT-TTTAATTCAAAGAACAAAAC
* * * * * *
21094109 TTTTTTACAAAATGACATACTATTTATACCAAATGATGCCATTTCCCGAGCATGTAATATTTAGA
509 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAG-
* * * *
21094174 AAAATTGCTCGAAGGAATGGATCGTCTTGAGTACTCTAAGAAACCGAAGTTATAAAAAGAACTCG
573 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTAT-AAAAGAACTCG
* * * * * *
21094239 TAAAAGTTTGAAAAGTTTGGAACTTCGTCAAAGAAAGAACCAATTGAGAAACAATTCTCACGTAA
637 TAAAAGTTTGACAAGTTCGAAAGTTCGTC----CAAGAACCAA--GAGAAACAATTCTCACATAA
* * * * *
21094304 ATAA-ATTTTGATTCAAAGACAAAAACTTTGTTGTTTCCAAAATG---AA-TATTTAGACCAAAT
696 ATAAGTTTTTAATCCAAAGACCAAAAC----TTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * *
21094364 GATGCTATCTCCGGAGAATGGAATGTTCAGAAAATTGCTCGACGGAATGGATCGTCTTGAATACT
757 GATGCCATTTCCCGAGAATGGAATGTTCA-AAAAATGCTCGAAGGAATGGATCGTCTTGAATACT
* * *
21094429 TGAAGGAACAGAAGTTATGAAAGAACTCGTA
821 TTAAGGAACCGAAGTTATAAAAGAACTCGTA
* * *
21094460 AAAGTTTGACAAGTTCGAAAGTTCTTCCAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CCA-AGAGAAACAATTCTCACGTAAATAAGT
* * ** * *
21094525 TTTTAATTCAAACAAAACAAATTTTTTTCACAAAATGACAAACTATTTAGACAAAATGATGCAAT
64 ATTTAATTCAAAGACCA-AAACTTGTTT-ACAAAATGACAAACTATTTAG--AAAATGATGCAAT
* * * * * * * * *
21094590 TTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGACCATCTTGAATACTTTATGGAA
125 TTTCCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAA
* * * * * * *
21094655 CTGAAATTATAAAAGAAGTCGTAAAAGTTTAACAAGTTCGAATGTTCGT-CAAAGAACTAAGAGT
190 CCGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATAC-AAGAACTAA-AGA
* * * * * * *
21094719 GAAACAATTCTCACGT-AATAAGTGTTTAATCCAAAGACCAAAAGTTTTTTACAAAATGACAGAC
252 GAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACAAAATGACAAAC
* * * * * * *
21094783 TATTTATACCAAATGATGCCATTTCTCGAGCATGTAATGTTCAAAAAAGTGCTCGAAGGAATGGA
316 TATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * * * * *
21094848 TCATCTTGAATAATGTAAGGAGCCGAAGTTATAAAATAACTCGTAAAAGTTTGACAAGTTCGAAA
381 T-GTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
* * *
21094913 GTTCGTCCAAGAACC-AAGAGGAACAATTCTCACGTAAATAAGTTTTTGATTCAAAGACCAAAAC
445 GTTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAAGAACAAAAC
* * * * * * * * * *
21094977 TTGTTTCCAAAGTGA-AGAACTATTTCGACTAAATGTTACTATCTCCCGAGAAT-GAATGTTCAG
509 TTGTTTACAAAATGACA-AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAG
* * * * * * *
21095040 AAAATTGATCGAAGGAATGCATCATC-TGAATGCTTTAAGGAGCCGAAGTTATGAAAGAACTCGT
573 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCGT
* * *
21095104 AAAAGTTTGACCAGTTCGAAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
638 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACATAAATAAG
* * * * *
21095169 TTTTTAATTC-AAGCAACAAAACTTTTTTAGAAAAAATGACAAACTATTTAGACCAAATGATGCG
701 TTTTTAATCCAAAG-ACCAAAACTTGTTT--ACAAAATGACAAACTATTTAGACCAAATGATGCC
* * ** * * *
21095233 A--TCCC-AGCATGGAATATTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACATTATGG
763 ATTTCCCGAGAATGGAAT-GTTCAAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* *
21095295 AACTGAA-TTATAAAAGAACTCGCA
827 AACCGAAGTTATAAAAGAACTCGTA
* * * * *
21095319 AAAGTTTAACAAGTTTGAAAGTTCGTCCAAGAACCAAAAGACAAAAAAAATTCTCACGTAAATAA
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC--AAG--AGAAACAATTCTCACGTAAATAA
* * * *
21095384 GTATGTAATTCAAAGACC-AAACTTTTTTACAAAATGACAAACAATTTAGAAAAATGATGCGATT
62 GTATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG-AAAATGATGCAATT
*
21095448 TTCCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATATTGTAAGG-A-
126 TTCCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAAC
* * * *
21095511 -GAAGTTATAAAAGAACTCGTAAAA-TTTGACTAGTTC-AGAAGTT-TTTCTAAGAACCAAGAGA
191 CGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCATAC-AAGAACTAA-AGA
* * * *
21095572 GAAACAATTCTCATGTAAAAAAATTCTTTTAATTCAAACACAAAAACTTGTTTACAAAATGACAA
252 GAAACAATTCTCAAGT-AAATAAGT-TTTTAATTCAAAAAC-AAAACTTGTTTACAAAATGACAA
* * ** * * * *
21095637 ACTAATTATG-CCAAATGATGTGATTTCCCGATTATGGAATGTTCGGAAAATAGCTTGAAGG-AG
314 ACTATTTA-GACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * **
21095700 GGACTGTCTTGAATACTTTAAGGAACTGAAGTTGTAAAAGAACTCGTAAAAGTTTGATTAGTTCG
378 GGA-TGTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * * * *
21095765 GAAG-TCGTCCAAAGAAACAAAGGGAGAGCAATCCTCAAGTAAATAGGTGTTTAATTCAAAGACC
442 GAAGTTCGTCC-AAGAACCAAAGAGA-AACAATTCTCACGTAAATAAGT-TTTAATTCAAAGAAC
* * *
21095829 AAAA-GTATTTACAAAATGACAAACTATTTAGAGCAAATGATGCGATTTCCCGAGCATGGAATGT
504 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * *
21095893 TGA-AAAATTGCTCGAAAGAATGAATCGTCTTGAATACTGTAAGAAACCG-AGTTATAAAAGAAC
569 TTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAAC
* * * * * ** *
21095956 TCGTAAAAG-TTGAAAAGTTCGGAAGTTCATGCAATAGTCAAGAGAAACAATTCTCACGTAAATA
634 TCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACATAAATA
* ** * * * *
21096020 AGTTTTCT-TTTTAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTTGACTAAATGATGCT
699 AGTTTT-TAATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCC
* * * *
21096084 ATTTCCCAAGAATGGAATGTTTACAAATTGCTC-AATGGAATGGATCGTCTTGAATACTTT-AGG
763 ATTTCCCGAGAATGGAATGTTCAAAAAATGCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGG
* *
21096147 AACCGAAGTTATAAAAAAACTTGTA
827 AACCGAAGTTATAAAAGAACTCGTA
*
21096172 AAAGTTTGACAAGTTTGGAAG-TCTGTCCAAGAACCGAGAGAGAAACAATTCTCACGTAAATAAG
1 AAAGTTTGACAAGTTCGGAAGTTC-GTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAAG
* * * *
21096236 TATTTAATTCAAAGACCAAAACTTGTTTACAAAAGGACAAACAATTTAGAAAAATGAAGCGATTT
63 TATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG-AAAATGATGCAATTT
* ***********************************
21096301 TTCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
127 TCCGAG------------------------CATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTA
***************************************** * *
21096366 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAAAGTTTGACAAGTTTGGAAG
168 TCGTCTTGAATACTGTAAGGAACCGAAGTTATAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
* * * * *
21096431 TTCGTCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT-ATTCAAAGACCAAAAC
233 TTCATACAAGAACTAA-AGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAAC
* * * * *
21096495 TTGTTTAC-AAATGACAAACAATTTAGACCAAATGATACGAGTTCCCGAGCATGGGAATGTT-TA
296 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAAT-GGAATGTTCGA
* * * *
21096558 GAAATTGCTCGAATGAAAGGATCGTCTTGAATACTTTAAGGAA-TCG-AGTGTA-AAAACGAACT
360 AAAATTGCTCGAAGGAATGGAT-GTCTTGAATACTTTATGGAACT-GAAGT-TATAAAA-GAACT
* ** ** *
21096620 CGT-AAAGTTGGACAAGTTCAAAAGTTCGTCCAAGAA-TTAAGGGAAACAATTCTCACGTAAATA
421 CGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATA
* * * * * *
21096683 AGTTTTTGATTTTAAAGACCAAAACTTGTTTACAAAATGGCAATCTATTTAGACCAAATTATGCG
486 AG-TTTT-AATTCAAAGAACAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * * * * *
21096748 ATTTCCCGAGAATGTAATGTTCAGAAAATTTGCTCGAA-GAGTCGATCATCTTGAATACTTTAAG
549 ATTTCCCGAGCATGGAATGTTTAGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* ** * *
21096812 GAATCGATGTTATAAAAGAATTC-TTAAAGTTTGACAAGTTC-AGAAGTTCGTCCAAGAACCAAG
613 GAACCGAAATTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAG
* * * * * *
21096875 AGAAGCAATTCTCACGTAAAAAAGTTTTTGATTCAAAGACCAAAAACTAGTTTACAAAATGAC-A
677 AGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGACC-AAAACTTGTTTACAAAATGACAA
** * ** * * * *
21096939 ACTAAATAGACAAAATGATGAGACTTCCCAATAATGGAATGTTCAGAAAATGCTC--A--AA-GG
741 ACTATTTAGACCAAATGATGCCATTTCCCGAGAATGGAATGTTCAAAAAATGCTCGAAGGAATGG
21096999 AT-G----G-AT-C------G-A---AAG-------AG--CTCGT-
806 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
* * * * *
21097018 -AAGTTTTAC-AGTTCGGAAATTCGTCCAATAACCAAGAGAGAAAAATTCTCACGTAAAGAATGT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-AACAATTCTCACGTAAATAA-GT
* * * * * * *
21097081 -TTAAATTC-AAGACCAAAAGTTTTTTCCAAAAGGACAAACTATTTAGACCAATTGATGCGATTT
64 ATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA--AAATGATGCAATTT
* * * * * * *
21097144 CCCGAGCGTGGAATGTTCAGAAAATTGCTCCAAGGAATGGATCGTCTTGAATACTGTAAGGAACC
127 TCCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACC
* * * * * * *
21097209 GAAGTTATAAATGAACACATAAAAGTTTTGACAAGTTTGGAAGTTTATCCAAGAACCAAGAGAGA
192 GAAGTTATAAA-GAACTCGTAAAAG-TTTGACAAGTTCGAAAGTTCATACAAGAACTAA-AGAGA
* * * * *
21097274 AACAATTCTCACGTAAAAAAGTTTTTAATTTAAAAGGCAAAAACTT-TTTACAAAATGACAAACA
254 AACAATTCTCAAGTAAATAAGTTTTTAATTCAAAA-AC-AAAACTTGTTTACAAAATGACAAACT
* * * * * * * *
21097338 ATTTAGA-AAAATAATGCGATTT-TCGAGCATAGAATGTTAG-AAAGTTGCTCGAAGGAATGTAT
317 ATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * ** * * * *
21097400 CATC-TGAA-GCTGCAGGGAA-TCGGAGTTATAAAAGAACTCAATAAAAGTTTGAAAAGTTCGGA
382 -GTCTTGAATACTTTATGGAACT-GAAGTTATAAAAGAACTC-GTAAAAGTTTGACAAGTTCGGA
* * * *
21097462 AGTTTGTCCAAGAACC-AAGAGAAACAATTCTCACGTAAATAAGTTTTTGATTCAAATACCAAAA
444 AGTTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAAGAACAAAA
* * * * * * *
21097526 CTTGTTTCCAAAATGACAAACTATTTAGACCAAATGCTGCTATTTCCCGAGAATGAAATGTTCAA
508 CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAG
* * * * * *
21097591 AAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGAAACCG-AGTTATGAAAGAACTGGT
573 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCGT
* * *
21097655 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAGAGAGAAATAATTCTCACGTAAATAAGT
638 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCA-AGAGAAACAATTCTCACATAAATAAGT
* * * *
21097720 TTTTAATTCAAACAACAAAACCTT-TTTAC-AAATGACAAACTATTTAGACCAAATGAATGCGAT
702 TTTTAATCCAAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATG-ATGCCAT
* * * * * *
21097783 TTCTCGAGCATGGAA--TTCGAAAAATAGCTCGAAGAGAATGGATTGACTTGAATACTTTATGGA
765 TTCCCGAGAATGGAATGTTCAAAAAAT-GCTCGAAG-GAATGGATCGTCTTGAATACTTTAAGGA
* *
21097846 ACCGAAATTATAAAAGAACTTGTA
828 ACCGAAGTTATAAAAGAACTCGTA
* * * * * * * *
21097870 AAAGTTTGAGAA-ATCGAAAGTTCATCCAAGAACTAAAAGGAAACAA-GCTCACGTAAATAAGTG
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGA-GAAACAATTCTCACGTAAATAAGTA
* * * *
21097933 TTTAATTCAAAGACCAAAAGTTGTGTACAAAATAACAAACTATTTAGACAAATGATGATGCGATT
65 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG--AAA--ATGATGCAATT
* * * * * * *
21097998 TCCCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGAAA
126 TTCCGAGCATAGAATGTTTAG-AAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAA
* * * * *
21098062 CCAAAGTTATAAAAGAACTCATAAAA-TTTGAAAAGTTC-AATAGTTCGT-CAAAGAACCAAGAG
190 CCGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGAA-AGTTCATAC-AAGAACTAA-AG
* * * * *
21098124 AGAAAC-ATTCTCACGT-AATAAGTTTTTAATCCAAAGACCAAAAGTTTTTTTTTTTAC-AAATG
251 AGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAA-----CTTGTTTACAAAATG
* * * * *
21098186 ACACACACTATTTATACCAAATGATGTC-ATTTCCTGAGCATGTAATGTT-TAGAAAATTGCTCG
310 ACA-A-ACTATTTAGACCAAATGATG-CGATTTCCCGAGAATGGAATGTTCGA-AAAATTGCTCG
* * * * ** * * *
21098249 AATGAATGGATTGTCTTGAATAATGTAAGGAACCAAAGTTATAAAAGAAATCGGAAAAGTTTAAC
371 AAGGAATGGA-TGTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * * *
21098314 AAGTTCGGAAGTTCGTCCAAGCACC-AAGAGAAACCATTCTCATGT-AATAATTTTTGATTCAAA
435 AAGTTCGGAAGTTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCAAA
* * * * *
21098377 G-GCAAAACTTGTTTCCAAAATGA-AGAACTATTTAGACCAAATGCTGCTATCTCCCGAG-ATGG
500 GAACAAAACTTGTTTACAAAATGACA-AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
* * * * * *
21098439 AATGTTCAG-AAAGTGCTCGAAGGCATGGATCATCTTGAATGCTTTAAGGAACCGAAGTTAT-AA
564 AATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAA
* *
21098502 AGAACT-GTAAAAGTTTGACAAGTTCGAAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTAC
629 AGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCAC
* * *
21098566 GT--ATAAGTTTTTTAATTCCCAAGAGAGAAACAATTCTTACGTAACTAAGTTTTTAATTCAATC
692 ATAAATAAG-TTTTTAA-T-CC-A-A-AG-----A--C---C--AA--AA-CTTGT--TT--A-C
* * * *
21098629 AACAAGACTTTTTTACAAATAACAAACTATTAGACCAAATGATGCGATTT-CCGAGCATGGAATG
731 -A-AA-A-----TGAC--A-AAC-TA-T-TTAGACCAAATGATGCCATTTCCCGAGAATGGAATG
* * * * * *
21098693 TTTTAAAAATTGATCGAAGGAATGGATCGTCTTGAATACATTATGGAACTGAA-TTATAAAAGAA
782 -TTCAAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
21098757 CTCGTAA
846 CTCGT-A
* *
21098764 AAAG-TTGACAAGTTCGGAAGTTCGTCCAAGAACCACAATAGAAACAACTCTCACGTAAATAAGT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-C-CAAGAGAAACAATTCTCACGTAAATAAGT
* * * * * *
21098828 ATGTAATTCGAAGACCAAAACTTTTTTACAAAATGACAAACAATTTAGAAAAATGATACGATTTT
64 ATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG-AAAATGATGCAATTTT
** * * *
21098893 CTAAGCA-A-AATATTTAGAAAGTTGCTCCAAGGAATGTATCGTCTTG-ATATTGTAAGGAACCG
128 CCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACCG
* * * * ** *
21098955 AATTTATAAAAGAACTCGT-AAATTTTGATAAGTTCAAAAGTTTGT-CTAAGAACCAAGAGAGAA
193 AAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATAC-AAGAACTAA-AGAGAA
* * * *
21099018 ACAATTCTC-AGTAAAAAAGTTCTTTTAATTCAAACCACAAAACTTGTTCACAAAATGATAAACT
255 ACAATTCTCAAGTAAATAAG-T-TTTTAATTCAAA-AACAAAACTTGTTTACAAAATGACAAACT
* * *
21099082 ATTTATACC-AATAATGCGATTTCCCGA-ACATGGAATGTTCGAAAATAATT--T-GAAGGAGTG
317 ATTTAGACCAAATGATGCGATTTCCCGAGA-ATGGAATGTTCG-AAA-AATTGCTCGAAGGAATG
* * * **
21099142 GATTGTCTTGAATACTTTAAGGAACCG-AGTTGTAAAAG-ACTCGTAAAAGTTTGATTAGTTTCG
379 GA-TGTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCG
* * * * * *
21099205 AAAGTTCATCAAAGAACCAAGGAG-AACAATCCTCACGTAAATAAGTTTTAATTCAAAG-ACTAA
442 GAAGTTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCAAAGAACAAA
* * * * *
21099268 AGTTGTTTACACAATTGACAAACTATTCAGACACCAAAATTGATGCAATTTCTCGAGCATGGAAT
507 ACTTGTTTACA-AAATGACAAACTATTTAG--ACC-AAA-TGATGCGATTTCCCGAGCATGGAAT
* * * * *
21099333 G-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTAAATACTATAAGGAACC-AAGTTATAAAAT
567 GTTTAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAG
* * * * * *
21099396 AACTCAT-AATGTTTGA-AAGTTCGGAAGTTCATCCAAGAGCCAAGAGAAACAATTCTCACGTAA
631 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACATAA
* ** * *
21099459 ATAAGTTTTCATTCATTTTAAGAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACTAAA
696 ATAAG-TTT--TT-AATCCAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * * *
21099524 TGATGCGA-TTCCCGAGAATAGAATTTTCAAAAATTGCTC-AATGAATGGATCGTTTTGAATACT
756 TGATGCCATTTCCCGAGAATGGAATGTTCAAAAAATGCTCGAAGGAATGGATCGTCTTGAATACT
21099587 TTAAGGAACCGAAGTTATAAAAGAACTCGT-
821 TTAAGGAACCGAAGTTATAAAAGAACTCGTA
* *
21099617 AAAGTTTGACAAGTT-GGAAGTTCATCCAAGAACCGAGAGAGAAAC-ACTCTCACGTAAATAAGT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAAGT
* * * * *
21099680 ATTGAATTCAAAGACCAAAACTTGTTTACACAAAAGGACAAA-TAATTTAAAAAAATGATGTGAT
64 ATTTAATTCAAAGACCAAAACTTGTTT--ACAAAATGACAAACT-ATTT-AGAAAATGATG-CAA
* * * *
21099744 TTTTTCGAGCATAGAATGTTTAGAAAGTTTGCTCGAAGGAATGTACCATCTTGAATAATGTAAGG
124 TTTTCCGAGCATAGAATGTTTAGAAAG-TTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGG
* * * * *
21099809 AACCGAAGTTATAAAAGAACTCGTAAATGCTTGACAAGTTTCGGAAGTTCAT-CAAGAAC-CACG
188 AACCGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAG-TTCGAAAGTTCATACAAGAACTAAAG
* * * * * *
21099872 AGAAACAATTCTCACGTAAAT--TTTTTTGATTTAAAGACAAAACCTTGTTTCCAAAATGAC-AA
251 AGAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAAACAAAA-CTTGTTTACAAAATGACAAA
* ** * * * *
21099934 CT-TTTAGACCAAATGCTGTTATTTTTCCCGAGAACGG-ATGTTCAAAAAATTGATCAAAGGAAT
315 CTATTTAGACCAAATGATGCGA--TTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * *
21099997 GGATCATCTTG-ATA-TTTAAGGAA-TCGAAGTTATGAAAAGAACTCATAAAAGTTTGACCAGTT
378 GGAT-GTCTTGAATACTTTATGGAACT-GAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTT
* * * * *
21100059 CGAAAGTTCATCCAAGAACCAAGAGACAAACAACTCTCACGTAAATAAGTTTTTAATTCAAACAA
440 CGGAAGTTCGTCCAAGAACCAA-AGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAAGAA
* * * * * * *
21100124 TAAAACTTTTTTATAAAATGACAAACTTTTTAGACCAAATAATGCCATTTCCCAATGCAT-GAAT
503 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCATGGAAT
* * * * * * *
21100188 ATTCAGAAAACTGCTCAAAGGAATGGATCGTCTTGAATACTTTATGGAACTGATATTATAAAA-A
567 GTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGA
* * * * *
21100252 GCTCGTAAAAGTTTGACAGGTTTGGAAGTTCATCC-AGAACCAAAAGAGAAAC-ATTCTCACAT-
632 ACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC--AAGAGAAACAATTCTCACATA
* * * * * * * *
21100314 AATGAGTATTTAATTCAAATACAAAAACTTGTTTACAAAAGGACAAACAATTTAGA-AAAATGAT
695 AATAAGTTTTTAATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* *** * * * ** * **
21100378 GCGATTTTTTGAGCATAG-ATGTTTAAGAATGTTGCTCGAAGGAATGTATCGTCTTGAATACGGT
760 GCCATTTCCCGAGAATGGAATGTTCAA-AA-AATGCTCGAAGGAATGGATCGTCTTGAATACTTT
** *
21100442 AAGGAATAGAAGTT-TATAAAGAACACGTA
823 AAGGAACCGAAGTTATA-AAAGAACTCGTA
* * * * *
21100471 AATGTTTGACAGGTTCAGAAGTTCAT-CAAGAACCAAGAGAAACAATTCTC-CGTAAATAAGTTT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAG-TA
* * * * *
21100534 TTTTATTCAAAGACCAAAATTTGTTT-CCAAATGACAAACT-TCTT-GAACCAAATGCTGCTATT
65 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT-TTAG-A--AAATGATGCAATT
* * * * * * *
21100596 TCCCGAGAATGGAATGTTTAGAAA-TTGCTCGAAGGAATGGATCGTCTTCAATACTTTAAGGAAT
126 TTCCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAAC
* * * * * * * ** *
21100660 TGAAGTGATGAAAGAACTCATAAAATTTTTGACCAGTTCAAAAGTTCGTGTAAGATC-AAGAGAG
191 CGAAGTTAT-AAAGAACTCGTAAAA-GTTTGACAAGTTCGAAAGTTCATACAAGAACTAA-AGAG
* * * * *
21100724 AAACAATTCTCACGTAAATAAG-TTTTAATTCAAACACCAAACTTTTTTATTACAAAATGACACA
253 AAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAAACAAAAC--TTGT-TTACAAAATGACAAA
* * ** * ** * * *
21100788 TTATTTATATAAAATGATGTC-ATTTCCTGATCATGTAATGTT-TAGAAATTGCTCGAAGGAATG
315 CTATTTAGACCAAATGATG-CGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * ** * *
21100851 GATCGTCTTGAATAATGTAAGGAACCAAATTTAT-AAACAACTCGTAAAAGTTTGACACAGTTCG
379 GAT-GTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACA-AGTTCG
* * * *
21100915 GAAGTTCGTCCAAGAA-CAAAGAGAAGCAATTCTCACGTAAATAAAATTTTTGATTCAAAGACCA
442 GAAGTTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAAT--AAGTTTTAATTCAAAGAACA
* * * * * *
21100979 AAACTTGTTT-CTAAAATGA-GAACTATTTAGACCAAATGCTACTATCTCCCGAGAATGGAATGT
505 AAACTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* ** ** *
21101042 TCAG-AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAGTCGAAGGT-T-CAAGAAC
569 TTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAAC
* * *
21101104 TCGT-AAAGTTTGACCAGTTCAAAAGTTCGT-------CCAAGAGAAACAATTCTCACGTAAATA
634 TCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACATAAATA
* * * * * * *
21101161 AGTGTTT-ATTCAAAGAACC-AAAGTTATTCACAAAATAACAAACTATTTAGACCAAATGATGCG
699 AGTTTTTAATCCAAAG-ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCC
* * * *
21101224 ATTTCCCGAGCATGGAATGTTTGAAAAAATTGC-CTAAGGAATGGATCGTCTTGAATACTCTAAG
763 ATTTCCCGAGAATGGAATG-TTCAAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * *
21101288 AAACTGAAGTTATAAAAGAACTCATA
826 GAACCGAAGTTATAAAAGAACTCGTA
* * *
21101314 AAAGTTTGAAAAGTTCGGAAGTTCGTCAAAGAACCAAAGAGAAACAATTTTCACGT-AATAAGTG
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-AAGAGAAACAATTCTCACGTAAATAA--G
* * * * * * * *
21101378 TTTTGTAAAATCCAAGATCAAAAGTTTTTTAC-AAATGACACACTATTATACAAAATGATGTC-A
63 TATT-T-AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT-TAGAAAATGATG-CAA
* * * * * * *
21101441 TTTCCCGAGCATGGAATGTTTAGAAAATTGCTCGATGGAATGGATTGTCTTGAATA-AGTAAGGA
124 TTTTCCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGA
* * * * * * * *
21101505 ACTGAAGTTATAAAAAACTCAT-AAAGTTTGACAAGTTCGGAAGTTCGTTCAACAAC-CAAGAG-
189 ACCGAAGTTATAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAACTAAAGAGA
* * * * * *
21101567 AACAATTCTCACGTAAATAAATTTTTGATTCACAGACCAAAACTTGTTTCCAAAATGA-AGAACT
254 AACAATTCTCAAGTAAATAAGTTTTTAATTCA-AAAACAAAACTTGTTTACAAAATGACA-AACT
* * * *
21101631 ATTTAGACCAAATGATGCTATCTT-CCGAGAATGAAATGTTC-ATAAATTGCT-GAAGAAATGGA
317 ATTTAGACCAAATGATGCGAT-TTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * * * **
21101693 TCGTCTTGAATGCTTTAAGGAGCCGAAGTTATGAAAGAACTCGTAAAAGTTTGATC-ATTTCAAA
381 T-GTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGA
** *
21101757 AGTTTATCCAAGAACCAAGAGAGAAACAATTCTCAC----ATAAGTTTTTAATTCAAAAAACAAA
444 AGTTCGTCCAAGAACCAA-AGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAAGAACAAA
* * * *
21101818 ACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCC-AGCATGAAATG-TTC
507 ACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTA
* * * *
21101881 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAGTACTCT-AGAAAACCGAAGTTATAAAAGAACT
572 G-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG-GAACCGAAATTATAAAAGAACT
* *
21101945 CGTAAAAGTTTG---AG---G-AACTTCGT-CAAGAACCAATAGAGAAACAATTCTCACGT-AAT
635 CGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACATAAAT
* * * *
21102001 AAGTGTTTTAATCCAAAGA-CAAAAGTTTTTTTACAAAATGACATACTATTTATACCAAATGATG
698 AAGT-TTTTAATCCAAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * *
21102065 -CATTTCCCGAGCATGTAAT-TTTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAGTACTCTAA
761 CCATTTCCCGAGAATGGAATGTTCA-AAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
*
21102128 GAAACCGAAGTTAT-AAAGAACTCGTA
825 GGAACCGAAGTTATAAAAGAACTCGTA
* * * * *
21102154 AAAG-TTGAAAAGTTTGGAACTTCGTCAAAGAACCAATTGAGAAACAATTCTCACGTAAATAAAT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAA--GAGAAACAATTCTCACGTAAATAAGT
* * * * * * *
21102218 TTTTGATTCAAAGA-CACAACTTG-TTCCAAAATGA-ATA-T-TTTAGACCAAATGATGCTA-TC
64 ATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA--AAATGATGCAATTT
* * * * *
21102277 TCCGGAG-ATGGAATGTTCAGAAAATTGCTCG-ACGAATGGATCGTCTTGAATACT-TGAAGGAA
127 TCC-GAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGT-AAGGAA
* * * *
21102339 CAGAAGTTTATGAAGAACTCGT-AAAGTTTGACAAGTTCGAAAGTTCTTCCAAGAA-TCAAGAGA
190 CCGAAG-TTATAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAACT-AA-AGA
* * *
21102402 GAAACAATTCTCACGTAAAT-AGTTTTTAATTCAAACAAC-AAATTTTTTTCACAAAATGACAAA
252 GAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTT-ACAAAATGACAAA
* * * *
21102465 CTATTTAGACAAAATGATGCAATTTCCCGAGCATGGAATGTTTG-AAAATTGCTCGAAGGAATGG
315 CTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
** * * *
21102529 ACCATCTTGAATACTTTATGGAAC-GAAATTATAAAAGAAGTCGTAAAAGTTTAACAAGTTC-GA
380 A-TGTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * * *
21102592 ATGTTCGTCAAAGAA-CAAGAGTGAAACAATTCTCACGT-AATAAGGTTTTAATCCAAAGACCAA
444 A-GTTCGTCCAAGAACCAA-AGAGAAACAATTCTCACGTAAATAA-GTTTTAATTCAAAGAACAA
** * * * * * *
21102655 AGTTTTTTTAAACAAAATGACAGACTATTTATACC-AATGATGCCATTTCTCGAGCATGTAATGT
506 AACTTGTTT--ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * * * *
21102719 TCAAAAAAGTGCTCGAAGGAATGGATCATCTTGAATAATGTAAGGAGCCGAAGTTATAAAATAAC
569 TTAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAAC
* *
21102784 TCGTAAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAA-CAA-AGAAACAATTCTCACGTAAAT
634 TCGT-AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACATAAAT
* * * * * * * * *
21102847 AAGTTTTTGATTCAAAGACCAAAAC-TGTTT-CCAAATGA-GAACTATTTCGACTAAATGTTACT
698 AAGTTTTTAATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCC
* * * * * *
21102909 A-TCCTCCGAGAATGGAATGTTCAGAAAATTGATCGAAGGAATGCATCATCTTGAATGCTTT-AG
763 ATTTC-CCGAGAATGGAATGTTCA-AAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* *
21102972 GAGCCGAAGTTATGAAAGAACTCGTA
826 GAACCGAAGTTATAAAAGAACTCGTA
* * * *
21102998 AAAGTTTGACCAGTTCGAAAGTTCTTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTTT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAG-TA
* * * *
21103063 TTTAATTC-AAGCAACAAAACTTTTTTAGAAAATGACAAACTATTTAGACCAAATGATGCGA--T
65 TTTAATTCAAAG-ACCAAAACTTGTTTACAAAATGACAAACTATTTAGA--AAATGATGCAATTT
* * * * * * *
21103125 TCCCA-CATGGAATATTTGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACAT-TATGGAAC
127 TCCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATAC-TGTAAGGAAC
* * * * * * *
21103188 TGAA-TTATAAAGAACTCGCAAAAGTTTAACAAGTT-GAAAGTTCGTCCAAGAACCAAAAGACAA
191 CGAAGTTATAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAA-CTAAAGA-GA
* * * * * *
21103251 AAAAATTCTCTCACGTAAATAAGTATGTAATTCAAAGACCAAAACTTTTTTACAAAATGACAAAC
254 AACAA-T-TCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACAAAATGACAAAC
* * * * * * * *
21103316 AATTTAGA-AAAATGATGCGATTTTCCGAGCATAGAATGTT-TAGAAAGTTGCTCGAAGGAATGT
316 TATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGA-AAAATTGCTCGAAGGAATGG
* * * *
21103379 ATCGTCTTGAATA-TTGTAAGG-A--GAAGTTATAAAAGAACTCGTAAAATTTTGACTAGTTCAG
380 AT-GTCTTGAATACTT-TATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
** * * * * *
21103440 AAGTTTTTCTAAGAACCAAGAGAGAAACAA-TCTCATGTAAAAAAATTCTTTTAATTC-AA-CAC
443 AAGTTCGTCCAAGAACCAA-AGAGAAACAATTCTCACGT-AAATAA--GTTTTAATTCAAAGAAC
* * **
21103502 AAAAACTTGTTTACAAAATGACAAACTAATTATG-CCAAATGATGTGATTTTTCCCGATTATGGA
504 -AAAACTTGTTTACAAAATGACAAACTATTTA-GACCAAATGATGCGA--TTTCCCGAGCATGGA
* * * * * * *
21103566 ATG-TTCGAAAATAGCTTGAAGGAGT-GA-CTGTCTTGAATACTTTAAGGAACTG-AAGTGTAAA
565 ATGTTTAGAAAATTGCTCGAAGGAATGGATC-GTCTTGAATACTTTAAGGAACCGAAATTATAAA
** * * * * *
21103627 AGAACTCGTAAAAGTTTGATTAGTTCGGAAGTTCGTCAAAGAACC-AGGGAGAGCAATCCTCA-A
629 AGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA-AACAATTCTCACA
* * * * * *
21103690 GTAAATAGGTGTTTAATTCAAAGACCAAAAGTTATTTAC-AAATGACAAACTATTTAGAGGCAAA
693 -TAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA-CCAAA
* * * * * *
21103754 TGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTGCTCGAAAGAATGAATCGTCTTGAATAC
756 TGATGCCATTTCCCGAGAATGGAATG-TTCAAAAAATGCTCGAAGGAATGGATCGTCTTGAATAC
*
21103819 TGTAAGGAACCG-AGTTATAAAAGAACTCGT-
820 TTTAAGGAACCGAAGTTATAAAAGAACTCGTA
* * * * ** *
21103849 AAAGTTTGAAAAGTTCGGAAGTTCATGCAATAGTCAAGAGAAACAATTCTCACGTAAATAAGTTT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTAT
** * * *
21103914 TTCTTTTTAAAGACCAAAACTTGTTTACAAAATGA-AAACTATTTTGACTAAATGATGCTA-TTT
66 TT-AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA--AAATGATGCAATTTT
* * * * * *
21103977 CCCAGAATGGAATGTTTTACAAA-TTGCTC-AATGGAATGGATCGTCTTGAATACTTTAAGGAAC
128 CCGAGCATAGAATG-TTTAGAAAGTTGCTCGAA-GGAATGTATCGTCTTGAATACTGTAAGGAAC
* * * * * * * *
21104040 CGAAGTTATAAAAAAACTTGTAAAAGTTTGACAAGTTTGGAAG-TCTGTCCAAGAACCGAGAGAG
191 CGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC-ATACAAGAA-CTAAAGAG
* * * *
21104104 AAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGTTTACAAAAAGGACAAAC
253 AAACAATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTAC-AAAATGACAAAC
* * ** ** * * * *
21104169 AATTTAGA--AAATGAAGCGATTTTTCGAGCGTAGAATGTT-TAGAAATTGCTCGAAGGAATGTA
316 TATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * *
21104231 TCGTCTTGAATAATGTAAGGAACTGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAA
381 T-GTCTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
* * * * *
21104296 GTTCATCCAAGAACC-AAGAG-AATAATTCTCACGT-AATAATTTTTGATTCAAAGACCAAAACT
445 GTTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCAAAGAACAAAACT
* * ** * * * * *
21104358 TGATTCCAAAATGACAAACTATTTAGACCAAATCCTGCTATTTCCAGAGAATAGAATGTTCAGAA
510 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAA
* * *
21104423 AATTGCTCGAA-GAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATGAAAGAACTCGTAA
575 AATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCGTAA
* * *
21104487 AAGTTTGACCAGTTCG-AAGTTCATCCAAGAACCAAGAGAGAAACAA-TCTCACGTAAATAAGTT
640 AAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACATAAATAAG-T
* * * * *
21104550 TTTTAATTCAAACAAC-AAACATT-TTTACATAATGAC-AACTATTTAGACCAAATGATGCGATT
702 TTTTAATCCAAAGACCAAAAC-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCCATT
* * * * * *
21104612 TCTCGAGCATGG-ATGTTCAGAAAATTGCTCGAAGGAATGGATCGCCTAGAATACTTTATGGAAC
766 TCCCGAGAATGGAATGTTCA-AAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
21104676 CGAA-TTATAAAAGAACTCGTA
830 CGAAGTTATAAAAGAACTCGTA
* *
21104697 AAAGTTTGACAAGTTC-GAATTTCATCCAAGAACCAAAGAGAGAACAATTCTCACGTAAATAAGT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-AAGAGA-AACAATTCTCACGTAAATAAGT
* * * * *
21104761 ATTTAATTCAAAAACTAAAATTTGTTTACAAAATGACAAAC-ATATAGACCAAATGATGCGATTT
64 ATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA--AAATGATGCAATTT
* * * * * * * * *
21104825 CCCAAGCATGGAATGTTCAAAAAATTGCTCGAAGG-ATGGATCGTCTTGAATACTCTAAGAAACC
127 TCCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACC
* * * * * *
21104889 GAAGTTATAAAGAACTCATAAAAGTTTAACAAGTTTGAAAGTTCGTTA-AAGAAC-CAAGAGAGA
192 GAAGTTATAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC-ATACAAGAACTAAAGAGAAA
* * * * * * * **
21104952 TAATTCTCACGT-AATATGTGTTTAATCCAAAGACCAAAAGTT-TTTAACAAAATGACACTCTA-
256 CAATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTT-ACAAAATGACAAACTAT
* * *
21105014 TT--------T-AT---A----CC--GAAT-G-ATG--C----CATTACTCG-A-G-AT---CGT
319 TTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATGT
* * * * * *
21105047 CTTAAATAATGTAAGGATC-GAAGTTAT-AAAGAACTCGTAAAAATTTGACAAGTTCGGAAGTTC
384 CTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
* * * *
21105110 GTCCAAGAA-C-AAGAGAACCAATTCTCACGTAAATAAGTTTTTGATTCAAAGATCAAAACTAGT
449 GTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAAGAACAAAACTTGT
* * * * * * *
21105173 TTCCAAAATGA-AGACTATTTAGACCAAATGCTGCTATTTCCCGAGAATGGAGTGTTCAG-AAAT
513 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAAAT
* *
21105236 TGCTCGAAGGAATGGATCGTCTTGAATGCTTTAAGGAACC-AAAGTTATGAAAGAACTCGTAAAA
578 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAA-TTATAAAAGAACTCGTAAAA
*
21105300 GTTTGACAAGTTCGAAAGTTCTTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTT
642 GTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAG--AAACAATTCTCACATAAATAAGTTTT
* **** * *
21105365 TAATTCAAAGA--ATTTTTTTTTTTCAAAATGACAAACTATTTAGACCAAATGATGCCGATTT-C
705 TAATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCC-ATTTCC
* * * * * * *
21105427 CAAGCATGGAATGTTCGGAAAATTGCTTGAAGGAATGGAT-GTCTTGAATACTTTATGGAACTGA
769 CGAGAATGGAATGTTC-AAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
*
21105491 AATTAT-AAAGAACTCGTA
833 AGTTATAAAAGAACTCGTA
* *
21105509 AAAGTTTGACAAGTTTGGAAGTTCGTCCAAGCACCAAAGAGAAACAATTCTCACGTAAATAAGTA
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-AAGAGAAACAATTCTCACGTAAATAAGTA
* *
21105574 TTTAATTCAAAAACCAAAACTTGTTTACAAAATGACAAA-TAATTTAGAAAATGATGCGATTTTC
65 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT-ATTTAGAAAATGATGCAATTTTC
* *
21105638 CGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATATATCATCTTGAATACTGTAAGGAACCGA
129 CGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACCGA
* * * *
21105703 AGTTACAAAAGAACTCGTAAAATTTTGACAAGTTC-AGAAGTTCGTATAAGAACTAAAAGAGAAA
194 AGTTA-TAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCATACAAGAACT-AAAGAGAAA
* *
21105767 CAATTCTCATGTAAA-AAATTCTTTAATTCAAAACACAAAACTTGTTTACAAAATGACAAACTAT
256 CAATTCTCAAGTAAATAAGTT-TTTAATTCAAAA-ACAAAACTTGTTTACAAAATGACAAACTAT
* * * *
21105831 TTATACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGGAAAATTGCTCGAATGAGTGGATTG
319 TTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA-TG
* * *
21105896 TCTTGAATACTTTATGGAA-TCGAAGTTGTAAAAAAAACTCGTAAAAGTTTGACTAGTTCGGAAG
383 TCTTGAATACTTTATGGAACT-GAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* * * * * * * *
21105960 TTTGTCAAAGAACCAAGGAG-AACAATCCTCGCGTAAATGAGTGTTTTATTCAAAG-ACCAAACA
446 TTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAAGT-TTTAATTCAAAGAACAAAAC-
*
21106023 TTGTTTACAAAATGACAAACTATTTAGAGCAAATGATGCGATTTCCCGAGCATGGAATGTTT-GA
509 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAG-
* * * **
21106087 AAAATTGCTCGAAAGAATGAATCGTCTTGAATACTGTAAGGAACCGAGTTTATAAAAGAACTCGT
573 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCGT
* * * * * ** *
21106152 AAAAGTTTGAAAAAGTTCG-GAGTTCATGCAATAGTC-AGAGAAACAATTCTCACGTAAATAAGT
638 AAAAGTTTG-ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACATAAATAAGT
* * * * * * *
21106215 TTTT-TTCGTTTTAAAGACC-AAACCTGTTTACAAAATGAAAAACTATTTAGACTAAATGATACA
702 TTTTAATC----CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCC
* * *
21106278 ATTTACCAGAGAATGGAATGTTCAAAAATTGCTC-ATTGGAATGGATCGTCTTGAATACTTTAAG
763 ATTT-CCCGAGAATGGAATGTTCAAAAAATGCTCGA-AGGAATGGATCGTCTTGAATACTTTAAG
*
21106342 GAATCGAAGTTATAAAAGAACTCGTA
826 GAACCGAAGTTATAAAAGAACTCGTA
* *
21106368 AAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAATCGAGAGAGAAACAATTCTCACGTAAATAAGT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CCA-AGAGAAACAATTCTCACGTAAATAAGT
* *
21106433 ATTTAATTCAAAGACCAAAACTTGTTTACAAAAGGACAAACAATTTAGAAAAATGATGCAATTTT
64 ATTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG-AAAATGATGCAATTTT
* *
21106498 TCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATAACCGTAAGG-A-C
128 CCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAAT-ACTGTAAGGAACC
* * * *
21106561 ----TTATAAAAAACTCGTAAATGTTTGACAAGTTCGGAAGTTCATACAAGAAC-CAAGAGAAAC
192 GAAGTTATAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAACTAAAGAGAAAC
* * * * * *
21106621 AATTCTCAAGTAAATAAGTTTCTGATTCTAAGATCAAAACTTGTTTCCAAAATGAAAAACTATTT
257 AATTCTCAAGTAAATAAGTTTTTAATTC-AAAAACAAAACTTGTTTACAAAATGACAAACTATTT
* * * *
21106686 AGACCAAATGCTGCTATTTCCCGAGAATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATCGTC
321 AGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT-GTC
* * * * * *
21106751 TTGAATACTTGAAGGAACCGAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCT
385 TTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCG
* * *
21106816 TCCAAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTTTTAATTCAAACAACAAAACTTTTT
450 TCCAAGAACCAA-AGAGAAACAATTCTCACGTAAATAAGTTTTAATTCAAAGAACAAAACTTGTT
** *
21106881 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTTCGAGCATGGAATGTTTGGAAAATT
514 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAAATT
* * * * *
21106946 GCTCGAAGGAATGGATCGTCTTGAATACTTTATGGAACTGAAATTATAAAACAAGTAGTAAAAGT
579 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCGTAAAAGT
*
21107011 TTGACAAGTTCGAAAGTTCGT-CAAGAACCAAGAGAGAAACAATTCTCACAT-AATAAGTGTTTA
644 TTGACAAGTTCGAAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACATAAATAAGTTTTTA
* * * * * * *
21107074 ATCCAAAGACCAAAAGTTTTTTATAGAATGACACACTATTTATACCAGATGATGCCATTTCCCGA
707 ATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCCATTTCCCGA
* * * * *
21107139 GCATGTAATGTTCAGAAAAATGCTCGAAGGAATGGATCGCCTTGAATAATGTAAGGAACCGAAGT
772 GAATGGAATGTTCA-AAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
* *
21107204 TATAAAAAAACTTGTA
836 TATAAAAGAACTCGTA
* * *
21107220 AAAGTTTGACAAGTTCGGAAGTTC-TCC-AGAACCAAGAGAAATAGTTCTCACGTAAATAAGTTT
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTAT
* * * * *
21107283 TTGATTCAAAGACCAAAACTTGTTTCCAAAATGA-AGAACTATTTAGACCAAATGCTGCTATTTC
66 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACA-AACTATTTAGA--AAATGATGCAATTTT
* * * * * * * * *
21107347 CCGAGAATGGAATGTTCAGAAAATTGCTCTAAGGAATGGATTGTCTTGAATGCTTTAAGGAACCG
128 CCGAGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACCG
* * *
21107412 AAGTTATGAAAGAACACGTAAAAGTTTGACAAGTTCGAAAGTTCTTCCAAGAACTAAGAGAGAAA
193 AAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAACTAA-AGAGAAA
*
21107477 CAATTCTCACGTAAATAAGTTTTTAATTCAAACAACAAAACCTT-TTTACAAAATGACAAACTAT
256 CAATTCTCAAGTAAATAAGTTTTTAATTCAAA-AACAAAA-CTTGTTTACAAAATGACAAACTAT
* * *
21107541 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATGT
319 TTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATGT
* *
21107606 CTTGAATACTTTATGGAACTAAAATTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
384 CTTGAATACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
* * * *
21107671 GTCCAAGAACCAAAAGAGAAATAATGCTCACGTAAATAAGTATTTAATTCAAAGAGCAAAGCTTG
449 GTCCAAGAACC-AAAGAGAAACAATTCTCACGTAAATAAGT-TTTAATTCAAAGAACAAAACTTG
* * * * * * *
21107736 TTTGCAAAATGACAAACAATTTAGA-AAAATGATGAGATTTTCCGAGCATAGAATGTTTAGAAAG
512 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAAA
* *
21107800 TTGCTCGAAGGAATGTATCGTCTTGAATA-TTGTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
577 TTGCTCGAAGGAATGGATCGTCTTGAATACTT-TAAGGAACCGAAATTATAAAAGAACTCGTAAA
* *
21107864 AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTTTTT
641 AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACATAAATAAGTTTTT
* * * * * * **
21107929 GATTCAAAGACCAAAACTTGTTTCCAAAATGACAAATTATTTAGACCAAACGCTGTTATTTCCCG
706 AATCCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCCATTTCCCG
* * *
21107994 AGAATGGAATGTTCAAAAAATTGTTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAG
771 AGAATGGAATGTTCAAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
*
21108059 TTATGAAAGAACTCGTA
835 TTATAAAAGAACTCGTA
* * * * *
21108076 ATAGTTTGACCAGTTCGAAAGTTTGTCCATGAACCAAGAGA
1 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
21108117 GAAACTACAT
Statistics
Matches: 16732, Mismatches: 2778, Indels: 1960
0.78 0.13 0.09
Matches are distributed among these distances:
809 6 0.00
810 74 0.00
811 173 0.01
812 261 0.02
813 113 0.01
815 20 0.00
816 35 0.00
817 6 0.00
818 54 0.00
819 182 0.01
820 148 0.01
821 69 0.00
822 23 0.00
823 26 0.00
824 28 0.00
825 15 0.00
826 271 0.02
827 106 0.01
828 152 0.01
829 211 0.01
830 42 0.00
831 45 0.00
832 31 0.00
833 43 0.00
834 106 0.01
835 92 0.01
836 130 0.01
837 144 0.01
838 111 0.01
839 91 0.01
840 243 0.01
841 378 0.02
842 340 0.02
843 347 0.02
844 340 0.02
845 188 0.01
846 427 0.03
847 427 0.03
848 851 0.05
849 431 0.03
850 448 0.03
851 484 0.03
852 855 0.05
853 1155 0.07
854 558 0.03
855 658 0.04
856 931 0.06
857 715 0.04
858 330 0.02
859 275 0.02
860 299 0.02
861 478 0.03
862 237 0.01
863 101 0.01
864 321 0.02
865 24 0.00
866 27 0.00
867 29 0.00
868 66 0.00
869 19 0.00
870 5 0.00
871 3 0.00
872 7 0.00
873 24 0.00
874 26 0.00
875 135 0.01
876 107 0.01
877 135 0.01
878 34 0.00
879 46 0.00
880 4 0.00
883 18 0.00
884 40 0.00
885 66 0.00
886 38 0.00
887 18 0.00
888 15 0.00
889 34 0.00
890 89 0.01
891 90 0.01
892 60 0.00
893 70 0.00
894 63 0.00
895 31 0.00
896 67 0.00
897 2 0.00
898 1 0.00
899 1 0.00
900 4 0.00
901 26 0.00
902 8 0.00
903 179 0.01
904 142 0.01
905 189 0.01
906 147 0.01
907 1 0.00
908 17 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (851 bp):
AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTAT
TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAAAATGATGCAATTTTCCG
AGCATAGAATGTTTAGAAAGTTGCTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACCGAAG
TTATAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAGAACTAAAGAGAAACAATT
CTCAAGTAAATAAGTTTTTAATTCAAAAACAAAACTTGTTTACAAAATGACAAACTATTTAGACC
AAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATGTCTTGAAT
ACTTTATGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
AACCAAAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCAAAGAACAAAACTTGTTTACAAAA
TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAAATTGCTCGAA
GGAATGGATCGTCTTGAATACTTTAAGGAACCGAAATTATAAAAGAACTCGTAAAAGTTTGACAA
GTTCGAAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACATAAATAAGTTTTTAATCCAAAGA
CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCCATTTCCCGAGAATGGAAT
GTTCAAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
CTCGTA
Found at i:21117380 original size:17 final size:19
Alignment explanation
Indices: 21117345--21117381 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
21117335 TTTAGAAGTA
*
21117345 TTTTAAAATTATTATAATT
1 TTTTAAAATTATTAAAATT
21117364 TTTTAAAA-TA-TAAAATT
1 TTTTAAAATTATTAAAATT
21117381 T
1 T
21117382 GAAATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 7 0.41
18 2 0.12
19 8 0.47
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTTAAAATTATTAAAATT
Found at i:21117418 original size:19 final size:19
Alignment explanation
Indices: 21117396--21117446 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
21117386 TTTTTATAAA
21117396 TATTTTGAATCTTAAAAAT
1 TATTTTGAATCTTAAAAAT
*
21117415 TATTTTGAATTTTAAAAAT
1 TATTTTGAATCTTAAAAAT
21117434 TATTTTGAATCTT
1 TATTTTGAATCTT
21117447 TTTTGTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (19 bp):
TATTTTGAATCTTAAAAAT
Found at i:21125932 original size:16 final size:16
Alignment explanation
Indices: 21125911--21125943 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
21125901 TGTTGGAAAA
21125911 ATAATATTTACTAGGG
1 ATAATATTTACTAGGG
21125927 ATAATATTTACTAGGG
1 ATAATATTTACTAGGG
21125943 A
1 A
21125944 ACTTTGAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.36
Consensus pattern (16 bp):
ATAATATTTACTAGGG
Found at i:21128684 original size:29 final size:30
Alignment explanation
Indices: 21128651--21128707 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
21128641 GGGACAAGAC
21128651 AACCACTTGAAAATGTGA-AGGTGTCTTAG
1 AACCACTTGAAAATGTGAGAGGTGTCTTAG
* *
21128680 AACCACTTGGAAATGTGAGGGGTGTCTT
1 AACCACTTGAAAATGTGAGAGGTGTCTT
21128708 GTTAACATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (30 bp):
AACCACTTGAAAATGTGAGAGGTGTCTTAG
Found at i:21137797 original size:12 final size:12
Alignment explanation
Indices: 21137780--21137811 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
21137770 GTTGAAGGAA
21137780 AAGGAAGAAGAG
1 AAGGAAGAAGAG
21137792 AAGGAAGAAGAG
1 AAGGAAGAAGAG
*
21137804 AATGAAGA
1 AAGGAAGA
21137812 GGACCCTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.03
Consensus pattern (12 bp):
AAGGAAGAAGAG
Found at i:21138133 original size:3 final size:3
Alignment explanation
Indices: 21138125--21138151 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
21138115 GCGTAAAGAC
21138125 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
21138152 CACAAAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:21141303 original size:12 final size:12
Alignment explanation
Indices: 21141286--21141326 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
21141276 AATACTTGTT
21141286 ATTTATTATTAA
1 ATTTATTATTAA
21141298 ATTTATTATTAA
1 ATTTATTATTAA
21141310 ATTTA--ATTAA
1 ATTTATTATTAA
21141320 TATTTAT
1 -ATTTAT
21141327 ATTTTTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 5 0.19
11 5 0.19
12 17 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTTATTATTAA
Found at i:21147873 original size:23 final size:24
Alignment explanation
Indices: 21147847--21147892 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
21147837 AAGCTGAAAA
*
21147847 AAAGAGAAAAAGAA-AAAAAAATT
1 AAAGACAAAAAGAATAAAAAAATT
* *
21147870 AAAGACATAAATAATAAAAAAAT
1 AAAGACAAAAAGAATAAAAAAAT
21147893 ATCCTTATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.76, C:0.02, G:0.09, T:0.13
Consensus pattern (24 bp):
AAAGACAAAAAGAATAAAAAAATT
Found at i:21158217 original size:21 final size:20
Alignment explanation
Indices: 21158193--21158293 Score: 80
Period size: 20 Copynumber: 5.0 Consensus size: 20
21158183 GCCTAGAGCT
*
21158193 ATTTTGACTTGTTTGAAAAAC
1 ATTTTGACTTGTTT-AAAATC
** *
21158214 ATTTTGAAGTG-TTAAAATG
1 ATTTTGACTTGTTTAAAATC
* * *
21158233 ATTTTAACTTGGTTGAAATC
1 ATTTTGACTTGTTTAAAATC
21158253 ATTTTG-CTTTGTTTAAAATC
1 ATTTTGAC-TTGTTTAAAATC
*
21158273 ATTTTAACTTGATTTTAAAAT
1 ATTTTGACTTG--TTTAAAAT
21158294 TGTTTCAAAA
Statistics
Matches: 62, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
19 13 0.21
20 31 0.50
21 10 0.16
22 8 0.13
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.48
Consensus pattern (20 bp):
ATTTTGACTTGTTTAAAATC
Found at i:21158249 original size:40 final size:40
Alignment explanation
Indices: 21158193--21158283 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 40
21158183 GCCTAGAGCT
* * *
21158193 ATTTTGACTTGTTTGAAAAACATTTTGAAGTG-TTAAAATG
1 ATTTTAACTTGGTTG-AAAACATTTTGAAGTGTTTAAAATC
* ***
21158233 ATTTTAACTTGGTTGAAATCATTTTGCTTTGTTTAAAATC
1 ATTTTAACTTGGTTGAAAACATTTTGAAGTGTTTAAAATC
21158273 ATTTTAACTTG
1 ATTTTAACTTG
21158284 ATTTTAAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 12 0.28
40 31 0.72
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (40 bp):
ATTTTAACTTGGTTGAAAACATTTTGAAGTGTTTAAAATC
Found at i:21158778 original size:36 final size:37
Alignment explanation
Indices: 21158728--21158802 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 37
21158718 AAAAAATTAC
*
21158728 TTGTATCTAAAAATAACAAT-AAG-ACATTAAGTTCAA
1 TTGTATCTAAAAATAACAATAAAGTA-ATGAAGTTCAA
** *
21158764 TTGTATCTTTAAATACCAATAAAGTAATGAAGTTCAA
1 TTGTATCTAAAAATAACAATAAAGTAATGAAGTTCAA
21158801 TT
1 TT
21158803 AAAACAGAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 17 0.52
37 15 0.45
38 1 0.03
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.35
Consensus pattern (37 bp):
TTGTATCTAAAAATAACAATAAAGTAATGAAGTTCAA
Found at i:21159810 original size:252 final size:252
Alignment explanation
Indices: 21159365--21159867 Score: 907
Period size: 252 Copynumber: 2.0 Consensus size: 252
21159355 ATGGGGAAGG
*
21159365 GTGACATTTGTACCAATTCCCCTCCCGTTAGCTTTTGTAATGTCTTTAAATAAGATATGCGCAAG
1 GTGACATTTGTACCAATTCCCCTCCCGTTAGCTTTCGTAATGTCTTTAAATAAGATATGCGCAAG
21159430 GTCGGGACGCCTATTATTTCTAAAACAATCGATCCACTAATAATCAGTGTTTTGAATCTTAGCGT
66 GTCGGGACGCCTATTATTTCTAAAACAATCGATCCACTAATAATCAGTGTTTTGAATCTTAGCGT
* *
21159495 GTTTTTTAATAGGCCTAAGGTTCCATGTAAGGATAAGATGTAGGACACTGTCATGAAGGTTTAGT
131 GTTTTTTAATAGGCCTAAGGTTCCACGTAAGGATAAGATGTAGGACACTATCATGAAGGTTTAGT
*
21159560 TCAGATACCAAGATGGAAGGAATAAAAAGCGAGGGATCATAGCTCTCCTTTTCATCT
196 TCAGATACCAAGACGGAAGGAATAAAAAGCGAGGGATCATAGCTCTCCTTTTCATCT
*
21159617 GTGACATTTGTACCGATTCCCCTCCCGTTAGCTTTCGTAATGTCTTTAAATAAGATATGCGCAAG
1 GTGACATTTGTACCAATTCCCCTCCCGTTAGCTTTCGTAATGTCTTTAAATAAGATATGCGCAAG
* * * *
21159682 GTCGGGATGCCTATTGTTTCTAAAACAATCGATCCACTAATAATCGGTGTTTTGAATCTTAGCTT
66 GTCGGGACGCCTATTATTTCTAAAACAATCGATCCACTAATAATCAGTGTTTTGAATCTTAGCGT
21159747 GTTTTTTAATAGGCCTAAGGTTCCACGTAAGGATAAGATGTAGGACACTATCATGAAGGTTTAGT
131 GTTTTTTAATAGGCCTAAGGTTCCACGTAAGGATAAGATGTAGGACACTATCATGAAGGTTTAGT
* *
21159812 TCAGATATCAAGACGGAAGGAATAAAAAGTGAGGGATCATAGCTCTCCTTTTCATC
196 TCAGATACCAAGACGGAAGGAATAAAAAGCGAGGGATCATAGCTCTCCTTTTCATC
21159868 GAAAAGACCT
Statistics
Matches: 240, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
252 240 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (252 bp):
GTGACATTTGTACCAATTCCCCTCCCGTTAGCTTTCGTAATGTCTTTAAATAAGATATGCGCAAG
GTCGGGACGCCTATTATTTCTAAAACAATCGATCCACTAATAATCAGTGTTTTGAATCTTAGCGT
GTTTTTTAATAGGCCTAAGGTTCCACGTAAGGATAAGATGTAGGACACTATCATGAAGGTTTAGT
TCAGATACCAAGACGGAAGGAATAAAAAGCGAGGGATCATAGCTCTCCTTTTCATCT
Found at i:21160760 original size:20 final size:20
Alignment explanation
Indices: 21160735--21160803 Score: 111
Period size: 20 Copynumber: 3.5 Consensus size: 20
21160725 AACCCCCGTG
21160735 GTATCGATATTTTTACACGA
1 GTATCGATATTTTTACACGA
21160755 GTATCGATATTTTTACACGA
1 GTATCGATATTTTTACACGA
* **
21160775 GTATCGATATTTTTATAAAA
1 GTATCGATATTTTTACACGA
21160795 GTATCGATA
1 GTATCGATA
21160804 ATTGTAAAAC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (20 bp):
GTATCGATATTTTTACACGA
Found at i:21160820 original size:40 final size:40
Alignment explanation
Indices: 21160736--21160823 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
21160726 ACCCCCGTGG
** * * * *
21160736 TATCGATATTTTTACACGAGTATCGATATTTTTACACGAG
1 TATCGATATTTTTACAAAAGTATCGATATTGTAAAACGAC
*
21160776 TATCGATATTTTTATAAAAGTATCGATAATTGTAAAAC-AC
1 TATCGATATTTTTACAAAAGTATCGAT-ATTGTAAAACGAC
21160816 TATCGATA
1 TATCGATA
21160824 CCAAATTGCA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 33 0.82
41 7 0.17
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (40 bp):
TATCGATATTTTTACAAAAGTATCGATATTGTAAAACGAC
Found at i:21166336 original size:19 final size:19
Alignment explanation
Indices: 21166314--21166444 Score: 124
Period size: 19 Copynumber: 6.9 Consensus size: 19
21166304 TACAATCCAA
21166314 TATTGCTCTTACGAGCCAG
1 TATTGCTCTTACGAGCCAG
* *
21166333 TATTGCTCTTACAAGCTAG
1 TATTGCTCTTACGAGCCAG
* *
21166352 TATTACTC-AACGAGCCAG
1 TATTGCTCTTACGAGCCAG
*
21166370 TATTGCTCTTATGAGCCAG
1 TATTGCTCTTACGAGCCAG
** *
21166389 TATTGCT-AAATGAGCCAG
1 TATTGCTCTTACGAGCCAG
* *
21166407 TATTTTCTCTTACGAGCCAA
1 TA-TTGCTCTTACGAGCCAG
*
21166427 TATTTGCTC-AACGAGCCA
1 TA-TTGCTCTTACGAGCCA
21166445 TTATGCTATT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
18 25 0.27
19 51 0.56
20 15 0.16
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (19 bp):
TATTGCTCTTACGAGCCAG
Found at i:21166367 original size:37 final size:37
Alignment explanation
Indices: 21166314--21166444 Score: 154
Period size: 37 Copynumber: 3.5 Consensus size: 37
21166304 TACAATCCAA
* * *
21166314 TATTGCTCTTACGAGCCAGTATTGCTCTTACAAGCTAG
1 TATTGCTC-AACGAGCCAGTATTGCTCTTACGAGCCAG
* *
21166352 TATTACTCAACGAGCCAGTATTGCTCTTATGAGCCAG
1 TATTGCTCAACGAGCCAGTATTGCTCTTACGAGCCAG
* * * *
21166389 TATTGCTAAATGAGCCAGTATTTTCTCTTACGAGCCAA
1 TATTGCTCAACGAGCCAGTA-TTGCTCTTACGAGCCAG
21166427 TATTTGCTCAACGAGCCA
1 TA-TTGCTCAACGAGCCA
21166445 TTATGCTATT
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
37 42 0.54
38 23 0.29
39 13 0.17
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (37 bp):
TATTGCTCAACGAGCCAGTATTGCTCTTACGAGCCAG
Found at i:21172601 original size:21 final size:21
Alignment explanation
Indices: 21172575--21172628 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
21172565 TAGTACATAT
*
21172575 TTCTACCGATACAAGTGTCT-C
1 TTCTACCGATACAAGTCT-TAC
* *
21172596 TTCTACCGAAATAAGTCTTAC
1 TTCTACCGATACAAGTCTTAC
21172617 TTCTACCGATAC
1 TTCTACCGATAC
21172629 TAAAAACTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (21 bp):
TTCTACCGATACAAGTCTTAC
Found at i:21173365 original size:20 final size:20
Alignment explanation
Indices: 21173317--21173394 Score: 106
Period size: 19 Copynumber: 4.0 Consensus size: 20
21173307 CTATCCAATA
*
21173317 TTGCTCTTACGAGTCAGTA-
1 TTGCTCTTACGAGCCAGTAT
21173336 TTGCTCTTACGAGCCAGTAT
1 TTGCTCTTACGAGCCAGTAT
*
21173356 TTGCTTTTACGAGCCAGTAT
1 TTGCTCTTACGAGCCAGTAT
* *
21173376 TTGCTC-AACGAGCTAGTAT
1 TTGCTCTTACGAGCCAGTAT
21173395 GCTATTCCCC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
19 29 0.55
20 24 0.45
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (20 bp):
TTGCTCTTACGAGCCAGTAT
Found at i:21173374 original size:39 final size:39
Alignment explanation
Indices: 21173317--21173394 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
21173307 CTATCCAATA
* *
21173317 TTGCTCTTACGAGTCAGTA-TTGCTCTTACGAGCCAGTAT
1 TTGCTCTTACGAGCCAGTATTTGCTC-AACGAGCCAGTAT
* *
21173356 TTGCTTTTACGAGCCAGTATTTGCTCAACGAGCTAGTAT
1 TTGCTCTTACGAGCCAGTATTTGCTCAACGAGCCAGTAT
21173395 GCTATTCCCC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 28 0.82
40 6 0.18
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (39 bp):
TTGCTCTTACGAGCCAGTATTTGCTCAACGAGCCAGTAT
Found at i:21185915 original size:20 final size:20
Alignment explanation
Indices: 21185852--21185936 Score: 68
Period size: 20 Copynumber: 4.2 Consensus size: 20
21185842 GCCTGGAGCT
*
21185852 ATTTTGACTTGTTTGGAAAA-C
1 ATTTTGACTTGGTT--AAAATC
** *
21185873 ATTTTGAAGT-GTTAAAATG
1 ATTTTGACTTGGTTAAAATC
*
21185892 ATTTTGACTTGGTTGAAATC
1 ATTTTGACTTGGTTAAAATC
*
21185912 ATTTTG-CTTTGTTTAAAATC
1 ATTTTGAC-TTGGTTAAAATC
21185932 ATTTT
1 ATTTT
21185937 AACTCAATTT
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
18 4 0.08
19 9 0.18
20 30 0.59
21 8 0.16
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.48
Consensus pattern (20 bp):
ATTTTGACTTGGTTAAAATC
Found at i:21185928 original size:40 final size:40
Alignment explanation
Indices: 21185852--21185936 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
21185842 GCCTGGAGCT
* *
21185852 ATTTTGACTTGTTTGGAAAACATTTTGAAGTGTTAAAATG
1 ATTTTGACTTGGTTGGAAAACATTTTGAAGTGTTAAAATC
* ***
21185892 ATTTTGACTTGGTT-GAAATCATTTTGCTTTGTTTAAAATC
1 ATTTTGACTTGGTTGGAAAACATTTTGAAGTG-TTAAAATC
21185932 ATTTT
1 ATTTT
21185937 AACTCAATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 13 0.34
40 25 0.66
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.48
Consensus pattern (40 bp):
ATTTTGACTTGGTTGGAAAACATTTTGAAGTGTTAAAATC
Found at i:21189768 original size:14 final size:14
Alignment explanation
Indices: 21189749--21189778 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
21189739 GTTGCTCCTC
21189749 TTTTCTTTTCTATT
1 TTTTCTTTTCTATT
*
21189763 TTTTCTTTTTTATT
1 TTTTCTTTTCTATT
21189777 TT
1 TT
21189779 AAAGATTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTCTTTTCTATT
Found at i:21191231 original size:49 final size:48
Alignment explanation
Indices: 21191077--21191253 Score: 189
Period size: 49 Copynumber: 3.7 Consensus size: 48
21191067 TGGTACTAAA
* * * * *
21191077 TTCGCCATTGCGACTTAAATCTTTCCTTTCAT-TTTTGAGGTATAAGG
1 TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATCTTCTGAGGTATGAGG
* * * * *
21191124 TTCACCGTTGCGGCTTAAACCTTTCCCTTTGTATCTTC-GTGGTATTG-GA
1 TTCGCCGTTGCGGCTTAAATCTTTCCC-TT-CATCTTCTGAGGTA-TGAGG
*
21191173 TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTACGAGG
1 TTCGCCGTTGCGGCTTAAATCTTTCCCTTCAT-CTTCTGAGGTATGAGG
*
21191222 TTCGTCGTTGCGGCTTAAATCTTTCCCTTCAT
1 TTCGCCGTTGCGGCTTAAATCTTTCCCTTCAT
21191254 ATCTTCATAG
Statistics
Matches: 106, Mismatches: 17, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
47 24 0.23
48 9 0.08
49 70 0.66
50 3 0.03
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (48 bp):
TTCGCCGTTGCGGCTTAAATCTTTCCCTTCATCTTCTGAGGTATGAGG
Found at i:21191249 original size:98 final size:96
Alignment explanation
Indices: 21191076--21191259 Score: 251
Period size: 98 Copynumber: 1.9 Consensus size: 96
21191066 ATGGTACTAA
* * *
21191076 ATTCGCCATTGCGACTTAAATCTTTCCTTTCATTTTTGAGGTATAAGGTTCACCGTTGCGGCTTA
1 ATTCGCCATTGCGACTTAAATCTTTCCCTTCATTTCTGAGGTACAAGGTTCACCGTTGCGGCTTA
**
21191141 AACCTTTCCCTTTGTATCTTCGTGGTATTGG
66 AACCTTTCCCTTCATATCTTCGTGGTATTGG
* * * **
21191172 ATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTACGAGGTTCGTCGTTGCGGCT
1 ATTCGCCATTGCGACTTAAATCTTTCCCTTCAT--TTCTGAGGTACAAGGTTCACCGTTGCGGCT
*
21191237 TAAATCTTTCCCTTCATATCTTC
64 TAAACCTTTCCCTTCATATCTTC
21191260 ATAGTAATGC
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
96 30 0.40
98 45 0.60
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.40
Consensus pattern (96 bp):
ATTCGCCATTGCGACTTAAATCTTTCCCTTCATTTCTGAGGTACAAGGTTCACCGTTGCGGCTTA
AACCTTTCCCTTCATATCTTCGTGGTATTGG
Found at i:21191698 original size:18 final size:18
Alignment explanation
Indices: 21191675--21191709 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21191665 GAAAAATTGC
* *
21191675 CAAATATTTATAAGGAAT
1 CAAATAATTACAAGGAAT
21191693 CAAATAATTACAAGGAA
1 CAAATAATTACAAGGAA
21191710 CAATATTAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.09, G:0.11, T:0.26
Consensus pattern (18 bp):
CAAATAATTACAAGGAAT
Found at i:21203993 original size:14 final size:14
Alignment explanation
Indices: 21203974--21204003 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
21203964 GTTGCTCCTC
21203974 TTTTCTTTTCTATT
1 TTTTCTTTTCTATT
*
21203988 TTTTCTTTTTTATT
1 TTTTCTTTTCTATT
21204002 TT
1 TT
21204004 AAAGATTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTCTTTTCTATT
Found at i:21206585 original size:17 final size:17
Alignment explanation
Indices: 21206563--21206612 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
21206553 TCAACGAGTT
21206563 GGTCAAAGTCAACGGCC
1 GGTCAAAGTCAACGGCC
* * *
21206580 GGTCAATGTCAATAGGTC
1 GGTCAAAGTCAA-CGGCC
*
21206598 GATCAAAGTCAACGG
1 GGTCAAAGTCAACGG
21206613 GTTCACGAGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.32, C:0.22, G:0.28, T:0.18
Consensus pattern (17 bp):
GGTCAAAGTCAACGGCC
Found at i:21212357 original size:185 final size:179
Alignment explanation
Indices: 21212020--21212363 Score: 496
Period size: 185 Copynumber: 1.9 Consensus size: 179
21212010 TTTCAAAATC
21212020 TTGATAATTATTAATATTAATTATAAATAAAATTTTAAAATTTATATTAATCAATATCAAGAGTT
1 TTGATAATTATTAATATTAATTATAAATAAAATTTTAAAATTTATATTAATCAATATCAAGAGTT
* * *
21212085 TGAATTAATATTTTTCATTTATTTTTTTTCAAAATTTTGATAACTCTTAATGTTTATTATAAATT
66 TGAATTAATATTTTTCATTTATTTTTTTTCAAAATTTAGATAACTCTTAATATTAATTATAAATT
21212150 AAATTTTATAATTTATATTAATTATTATCAAAAATTTTCATTTAAAGTG
131 AAATTTTATAATTTATATTAATTATTATCAAAAATTTTCATTTAAAGTG
* * * ***
21212199 TTGATAATTCTTAATATTAATTATAAATTAAATTTTATAATTTATATTAATTGTTATCAAGAGTT
1 TTGATAATTATTAATATTAATTATAAATAAAATTTTAAAATTTATATTAATCAATATCAAGAGTT
21212264 TGAGATTAGAT-TTTCTT-ATTTAATTTTTTATTTTTCAAAATTTAGATAA-TCCTTAATATTAA
66 TGA-ATTA-ATATTT-TTCATTT-A---TTT-TTTTTCAAAATTTAGATAACT-CTTAATATTAA
*
21212326 TTATAAATTAAGTTTTATAATTTATATTAATTATTATC
122 TTATAAATTAAATTTTATAATTTATATTAATTATTATC
21212364 TAAAGTTTGA
Statistics
Matches: 146, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
179 62 0.42
180 11 0.08
181 5 0.03
184 4 0.03
185 64 0.44
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.51
Consensus pattern (179 bp):
TTGATAATTATTAATATTAATTATAAATAAAATTTTAAAATTTATATTAATCAATATCAAGAGTT
TGAATTAATATTTTTCATTTATTTTTTTTCAAAATTTAGATAACTCTTAATATTAATTATAAATT
AAATTTTATAATTTATATTAATTATTATCAAAAATTTTCATTTAAAGTG
Found at i:21212397 original size:107 final size:107
Alignment explanation
Indices: 21212201--21212397 Score: 292
Period size: 107 Copynumber: 1.8 Consensus size: 107
21212191 TTAAAGTGTT
* *
21212201 GATAATTCTTAATATTAATTATAAATTAAATTTTATAATTTATATTAATTGTTATCAAGAGTTTG
1 GATAATCCTTAATATTAATTATAAATTAAATTTTATAATTTATATTAATTATTATCAAGAGTTTG
**
21212266 AGATTAGATTTTCTTATTTAATTTTTTATTTTTCAAAATTTA
66 AGATTAGATTTTCTTAAATAATTTTTTATTTTTCAAAATTTA
*
21212308 GATAATCCTTAATATTAATTATAAATTAAGTTTTATAATTTATATTAATTATTATCTAA-AGTTT
1 GATAATCCTTAATATTAATTATAAATTAAATTTTATAATTTATATTAATTATTATC-AAGAGTTT
*
21212372 GA-ATTAGGATTTGTTTTAAAT-ATTTT
65 GAGATTA-GATTT-TCTTAAATAATTTT
21212398 GAATTTAAAT
Statistics
Matches: 81, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
106 4 0.05
107 70 0.86
108 7 0.09
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (107 bp):
GATAATCCTTAATATTAATTATAAATTAAATTTTATAATTTATATTAATTATTATCAAGAGTTTG
AGATTAGATTTTCTTAAATAATTTTTTATTTTTCAAAATTTA
Found at i:21212809 original size:16 final size:16
Alignment explanation
Indices: 21212768--21212822 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
21212758 TACTGTTCGC
*
21212768 TGCTGCTGTCGAG-TT
1 TGCTGCTGTCGAGCTA
* *
21212783 TGCTACGGTCGAGCTA
1 TGCTGCTGTCGAGCTA
*
21212799 TGCTGCTGTCGAGCTG
1 TGCTGCTGTCGAGCTA
21212815 TGCTGCTG
1 TGCTGCTG
21212823 CTGAGCCGTG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 11 0.33
16 22 0.67
ACGTcount: A:0.09, C:0.24, G:0.35, T:0.33
Consensus pattern (16 bp):
TGCTGCTGTCGAGCTA
Found at i:21212828 original size:16 final size:17
Alignment explanation
Indices: 21212791--21212839 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 17
21212781 TTTGCTACGG
*
21212791 TCGAGCTATGCTGCTG-
1 TCGAGCTGTGCTGCTGC
21212807 TCGAGCTGTGCTGCTGC
1 TCGAGCTGTGCTGCTGC
* *
21212824 T-GAGCCGTGTTGCTGC
1 TCGAGCTGTGCTGCTGC
21212840 CAAGCCACAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 28 0.97
17 1 0.03
ACGTcount: A:0.08, C:0.27, G:0.35, T:0.31
Consensus pattern (17 bp):
TCGAGCTGTGCTGCTGC
Found at i:21215242 original size:13 final size:12
Alignment explanation
Indices: 21215223--21215258 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
21215213 AATGATGCTC
21215223 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
21215235 ATGAAAAAAAGAA
1 A-GAAAAAGAGAA
21215248 AGAAAAAGAGA
1 AGAAAAAGAGA
21215259 GCATATGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:21228111 original size:21 final size:21
Alignment explanation
Indices: 21228073--21228130 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
21228063 CAGTATAGAT
** *
21228073 TTCTACTGATACTTGTGCTAG
1 TTCTACTGATACAAGTGCAAG
* *
21228094 TTCTACTGGTACAAGTGCAAT
1 TTCTACTGATACAAGTGCAAG
*
21228115 TTCTACCGATACAAGT
1 TTCTACTGATACAAGT
21228131 CATGCATCTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (21 bp):
TTCTACTGATACAAGTGCAAG
Found at i:21229963 original size:52 final size:52
Alignment explanation
Indices: 21229866--21230100 Score: 310
Period size: 52 Copynumber: 4.5 Consensus size: 52
21229856 CAAAAAAGTT
* *
21229866 CGATGACTCTGTGTCATCGTGAGTTATATGAATCCTTTACGGATTATGAGGTC
1 CGATGACTATGTGTCATCGTGAG-TATATGAATCCTTTACGGATTATAAGGTC
* * *
21229919 TGATGACTATGTGTCATCATGAGTATATGAATCCTTTATGGATTATAAGGTC
1 CGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTC
* * * * *
21229971 CGATGACTATGTGTCATCGCGAGTATATGAATTCTTTACGAATTATGAGGTT
1 CGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTC
* * **
21230023 CGATGACTATGTGTCATCGTGAGCATATGGATCCTTTTAAAGATT-TAAGGTC
1 CGATGACTATGTGTCATCGTGAGTATATGAATCC-TTTACGGATTATAAGGTC
*
21230075 CGATGACTTTGTGTCATCGTGAGTAT
1 CGATGACTATGTGTCATCGTGAGTAT
21230101 TAAATGGGAA
Statistics
Matches: 157, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
52 130 0.83
53 27 0.17
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (52 bp):
CGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATAAGGTC
Found at i:21232214 original size:40 final size:40
Alignment explanation
Indices: 21232169--21232289 Score: 127
Period size: 40 Copynumber: 3.0 Consensus size: 40
21232159 CCATAGCTTG
* * *
21232169 GCTTGAATT-TCAACACCGACTCATAGCTTGCTAAGTTGTA
1 GCTTGAATTAT-AACACCGACTCATAACCTGCTAAGTCGTA
*
21232209 GCTTGAGTTATAACACCGACTCATAACCTGCTAAGTCGTA
1 GCTTGAATTATAACACCGACTCATAACCTGCTAAGTCGTA
* * * * * * *
21232249 GCTTGAGTTCTATCATCGGCTCATAGCCTGCTAAGCCGTA
1 GCTTGAATTATAACACCGACTCATAACCTGCTAAGTCGTA
21232289 G
1 G
21232290 TTTAAGTTCT
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
40 69 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (40 bp):
GCTTGAATTATAACACCGACTCATAACCTGCTAAGTCGTA
Found at i:21232371 original size:120 final size:120
Alignment explanation
Indices: 21232192--21232420 Score: 293
Period size: 120 Copynumber: 1.9 Consensus size: 120
21232182 CACCGACTCA
* *
21232192 TAGCTTGCTAAGTTGTAGCTTGAGTTATAACACCGACTCATAACCTGCTAAGTCGTAGCTTGAGT
1 TAGCTTGCTAAGTTGTAGCTTGAGTTATAACACCGACTCATAACCTGCTAAGCCATAGCTTGAGT
* * *
21232257 TCTATCATCGGCTCATAGCCTGCTAAGCCGTAG-TTTAAGTTCTATCATCGGCTCG
66 TCTATCACCAGCTCATAGCCTGCTAAGCCGCAGCTTTAA-TTCTATCATCGGCTCG
* * * * * *
21232312 TAGCTTGCTAAGCTAT-TA-CTTGAGTTCTATCACCGGCTCGTAGCTTGCTAAGCCATAGCTTGA
1 TAGCTTGCTAAG-T-TGTAGCTTGAGTTATAACACCGACTCATAACCTGCTAAGCCATAGCTTGA
* *
21232375 GTTCTATCACCAGCTCGTAGCTTGCTAAGCCGCAGCTTTAATTCTA
64 GTTCTATCACCAGCTCATAGCCTGCTAAGCCGCAGCTTTAATTCTA
21232421 CCCAATATAT
Statistics
Matches: 93, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
120 84 0.90
121 8 0.09
122 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (120 bp):
TAGCTTGCTAAGTTGTAGCTTGAGTTATAACACCGACTCATAACCTGCTAAGCCATAGCTTGAGT
TCTATCACCAGCTCATAGCCTGCTAAGCCGCAGCTTTAATTCTATCATCGGCTCG
Found at i:21232420 original size:40 final size:40
Alignment explanation
Indices: 21232182--21232412 Score: 248
Period size: 40 Copynumber: 5.8 Consensus size: 40
21232172 TGAATTTCAA
* * ** * *
21232182 CACCGACTCATAGCTTGCTAAGTTGTAGCTTGAGTTATAA
1 CACCGGCTCGTAGCTTGCTAAGCCGTAGCTTGAGTTCTAT
* * * * *
21232222 CACCGACTCATAACCTGCTAAGTCGTAGCTTGAGTTCTAT
1 CACCGGCTCGTAGCTTGCTAAGCCGTAGCTTGAGTTCTAT
* * * * *
21232262 CATCGGCTCATAGCCTGCTAAGCCGTAGTTTAAGTTCTAT
1 CACCGGCTCGTAGCTTGCTAAGCCGTAGCTTGAGTTCTAT
* **
21232302 CATCGGCTCGTAGCTTGCTAAGCTATTA-CTTGAGTTCTAT
1 CACCGGCTCGTAGCTTGCTAAGC-CGTAGCTTGAGTTCTAT
*
21232342 CACCGGCTCGTAGCTTGCTAAGCCATAGCTTGAGTTCTAT
1 CACCGGCTCGTAGCTTGCTAAGCCGTAGCTTGAGTTCTAT
* *
21232382 CACCAGCTCGTAGCTTGCTAAGCCGCAGCTT
1 CACCGGCTCGTAGCTTGCTAAGCCGTAGCTT
21232413 TAATTCTACC
Statistics
Matches: 166, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.01
40 162 0.98
41 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (40 bp):
CACCGGCTCGTAGCTTGCTAAGCCGTAGCTTGAGTTCTAT
Found at i:21236350 original size:69 final size:69
Alignment explanation
Indices: 21236239--21236386 Score: 260
Period size: 69 Copynumber: 2.1 Consensus size: 69
21236229 GGGGACAGGC
21236239 GGCATTCTGACATAAAACCATGGTTGGACCATAGCAGTGTATATAGATGTAAGACCATAGCTGGG
1 GGCATTCTGACATAAAACCATGGTTGGACCATAGCAGTGTATATAGATGTAAGACCATAGCTGGG
21236304 CTAT
66 CTAT
* * * *
21236308 GGCATTCTGACGTAAGACCATGGTTGGATCATGGCAGTGTATATAGATGTAAGACCATAGCTGGG
1 GGCATTCTGACATAAAACCATGGTTGGACCATAGCAGTGTATATAGATGTAAGACCATAGCTGGG
21236373 CTAT
66 CTAT
21236377 GGCATTCTGA
1 GGCATTCTGA
21236387 TGTTAAGATC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 75 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (69 bp):
GGCATTCTGACATAAAACCATGGTTGGACCATAGCAGTGTATATAGATGTAAGACCATAGCTGGG
CTAT
Found at i:21236379 original size:37 final size:37
Alignment explanation
Indices: 21236272--21236380 Score: 122
Period size: 37 Copynumber: 3.1 Consensus size: 37
21236262 TTGGACCATA
21236272 GCAGTGTATATAGATGTAAGACCATAGCTGGGCTATG
1 GCAGTGTATATAGATGTAAGACCATAGCTGGGCTATG
* * * * *
21236309 GCA---T-TCT-GACGTAAGACCAT-GGTTGGATCATG
1 GCAGTGTATATAGATGTAAGACCATAGCTGGGCT-ATG
21236341 GCAGTGTATATAGATGTAAGACCATAGCTGGGCTATG
1 GCAGTGTATATAGATGTAAGACCATAGCTGGGCTATG
21236378 GCA
1 GCA
21236381 TTCTGATGTT
Statistics
Matches: 55, Mismatches: 10, Indels: 14
0.70 0.13 0.18
Matches are distributed among these distances:
31 5 0.09
32 18 0.33
33 2 0.04
34 1 0.02
35 1 0.02
36 2 0.04
37 21 0.38
38 5 0.09
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (37 bp):
GCAGTGTATATAGATGTAAGACCATAGCTGGGCTATG
Found at i:21236438 original size:33 final size:32
Alignment explanation
Indices: 21236284--21236480 Score: 128
Period size: 33 Copynumber: 5.9 Consensus size: 32
21236274 AGTGTATATA
*
21236284 GATGTAAGACCATAGCTGGGCTATGGCATTCT
1 GATGTAAGACCATAGCTGGGCTATGGCATTAT
* * * *
21236316 GACGTAAGACCAT-GGTTGGATCATGGCAGTGTATAT
1 GATGTAAGACCATAGCTGGGCT-ATGGCA---T-TAT
*
21236352 AGATGTAAGACCATAGCTGGGCTATGGCATTCT
1 -GATGTAAGACCATAGCTGGGCTATGGCATTAT
* * * * *
21236385 GATGTTAAGATCGTAACTGGGTTATAGCATTAT
1 GATG-TAAGACCATAGCTGGGCTATGGCATTAT
* * * *
21236418 GAATGTAAGACCATGGCTGGGCCATGACGATGCA-
1 G-ATGTAAGACCATAGCTGGGCTATGGC-AT-TAT
* * *
21236452 CATGTAAGACCATAGTTGGACTATGGCAT
1 GATGTAAGACCATAGCTGGGCTATGGCAT
21236481 AATATGAAAT
Statistics
Matches: 123, Mismatches: 31, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
31 5 0.04
32 24 0.20
33 61 0.50
34 6 0.05
35 2 0.02
36 2 0.02
37 18 0.15
38 5 0.04
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (32 bp):
GATGTAAGACCATAGCTGGGCTATGGCATTAT
Found at i:21237381 original size:21 final size:21
Alignment explanation
Indices: 21237333--21237382 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
21237323 CTAGAGTTTG
*
21237333 TTGTGTCGGTAGAAGTAATAA
1 TTGTATCGGTAGAAGTAATAA
* * * *
21237354 TTATATCGGTAGTAGTCATAC
1 TTGTATCGGTAGAAGTAATAA
21237375 TTGTATCG
1 TTGTATCG
21237383 ATAAAACCTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (21 bp):
TTGTATCGGTAGAAGTAATAA
Found at i:21243373 original size:46 final size:49
Alignment explanation
Indices: 21243274--21243378 Score: 144
Period size: 51 Copynumber: 2.2 Consensus size: 49
21243264 TATGCATCAT
* * *
21243274 AAAAAATAACTTGCACCAATAATGTAGGCAAGGAAATGAATATGTATGTAG
1 AAAAAATAACTTGCACCAATAATGTAGGCAAGGAAAT-AACA-GCATGCAG
21243325 AAAAAATAACTTGCACCAATAATGTAGGCAAGG-AAT-ACA-CATGCAG
1 AAAAAATAACTTGCACCAATAATGTAGGCAAGGAAATAACAGCATGCAG
21243371 AAAAAATA
1 AAAAAATA
21243379 GGCAAAGAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
46 13 0.25
48 2 0.04
50 3 0.06
51 33 0.65
ACGTcount: A:0.50, C:0.12, G:0.17, T:0.20
Consensus pattern (49 bp):
AAAAAATAACTTGCACCAATAATGTAGGCAAGGAAATAACAGCATGCAG
Found at i:21246930 original size:21 final size:20
Alignment explanation
Indices: 21246893--21246938 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
21246883 AAAATGAAAT
* *
21246893 AAAAAAATTAAATTAAAAAC
1 AAAAAAATGAAAATAAAAAC
*
21246913 AAAAAATATGAAAATAAAAAT
1 AAAAAA-ATGAAAATAAAAAC
21246934 AAAAA
1 AAAAA
21246939 TGGTTAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (20 bp):
AAAAAAATGAAAATAAAAAC
Found at i:21248026 original size:25 final size:23
Alignment explanation
Indices: 21247998--21248043 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
21247988 GTTGGATCCA
21247998 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
21248023 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
21248044 CCCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:21251629 original size:6 final size:6
Alignment explanation
Indices: 21251618--21251643 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
21251608 CATACATACA
21251618 TATATG TATATG TATATG TATATG TA
1 TATATG TATATG TATATG TATATG TA
21251644 CCACCCTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:21252918 original size:37 final size:37
Alignment explanation
Indices: 21252877--21253058 Score: 211
Period size: 37 Copynumber: 4.9 Consensus size: 37
21252867 CCAAGTACAG
*
21252877 CGGCACGAAGCCTGCTAGGCACATAGTCTGAATTCAC
1 CGGCACGAAGCCTGCTAGGCACATAGCCTGAATTCAC
* ** *
21252914 CGGCACGAAACAAGCTAGGCACATAGCATGAATTCAC
1 CGGCACGAAGCCTGCTAGGCACATAGCCTGAATTCAC
* * * * *
21252951 TGGCACGAAGTCTGCTAGGCATATAGCCTAAATACAC
1 CGGCACGAAGCCTGCTAGGCACATAGCCTGAATTCAC
** * * *
21252988 AAGCACGAAGCTTGCTAGGCACACAACCTGAATTCAC
1 CGGCACGAAGCCTGCTAGGCACATAGCCTGAATTCAC
* *
21253025 CGGCACGAAGCTTGCTAGGCACACAGCCTGAATT
1 CGGCACGAAGCCTGCTAGGCACATAGCCTGAATT
21253059 ACTTAAATGA
Statistics
Matches: 119, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 119 1.00
ACGTcount: A:0.32, C:0.28, G:0.23, T:0.18
Consensus pattern (37 bp):
CGGCACGAAGCCTGCTAGGCACATAGCCTGAATTCAC
Found at i:21253045 original size:111 final size:111
Alignment explanation
Indices: 21252851--21253058 Score: 285
Period size: 111 Copynumber: 1.9 Consensus size: 111
21252841 ACACAAAGGC
* * * **
21252851 CTGCTAGGCATATAGTCCAAGTACAGCGGCACGAAGCCTGCTAGGCACATAGTCTGAATTCACCG
1 CTGCTAGGCATATAGTCCAAATACAGCAGCACGAAGCCTGCTAGGCACACAACCTGAATTCACCG
*
21252916 GCACGAAACAAGCTAGGCACATAGCATGAATTCACTGGCACGAAGT
66 GCACGAAACAAGCTAGGCACACAGCATGAATTCACTGGCACGAAGT
*
21252962 CTGCTAGGCATATAG-CCTAAATACA-CAAGCACGAAGCTTGCTAGGCACACAACCTGAATTCAC
1 CTGCTAGGCATATAGTCC-AAATACAGC-AGCACGAAGCCTGCTAGGCACACAACCTGAATTCAC
* ** *
21253025 CGGCACGAAGCTTGCTAGGCACACAGCCTGAATT
64 CGGCACGAAACAAGCTAGGCACACAGCATGAATT
21253059 ACTTAAATGA
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
110 3 0.04
111 81 0.96
ACGTcount: A:0.32, C:0.27, G:0.23, T:0.18
Consensus pattern (111 bp):
CTGCTAGGCATATAGTCCAAATACAGCAGCACGAAGCCTGCTAGGCACACAACCTGAATTCACCG
GCACGAAACAAGCTAGGCACACAGCATGAATTCACTGGCACGAAGT
Found at i:21255771 original size:38 final size:38
Alignment explanation
Indices: 21255720--21255796 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
21255710 GTGAAAACAA
21255720 AGGTTTAACCTTGAGTTCAGCTAAAATAGAAGTATCAC
1 AGGTTTAACCTTGAGTTCAGCTAAAATAGAAGTATCAC
21255758 AGGTTTAACCTTGAGTTCAGCTAAAATAGAAGTATCAC
1 AGGTTTAACCTTGAGTTCAGCTAAAATAGAAGTATCAC
21255796 A
1 A
21255797 CTCCATACGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (38 bp):
AGGTTTAACCTTGAGTTCAGCTAAAATAGAAGTATCAC
Found at i:21260296 original size:74 final size:74
Alignment explanation
Indices: 21260169--21260354 Score: 257
Period size: 74 Copynumber: 2.5 Consensus size: 74
21260159 AGTTCTCCAA
* * *
21260169 TCACCGGCACAAAGGCCTGCTAGGCATATAGCCCGAGTACACCGGCACGAAGCCTGCTAGGCACA
1 TCACCGGCACGAA-GCCTGCTAGGCACATAGCCCGAATACACCGGCACGAAGCCTGCTAGGCACA
* **
21260234 TAGGCTGAAT
65 CAACCTGAAT
* * *
21260244 TCACCGGCACGAAGCCTGTTAGGCACATAGCCTGAATACACCGGCACTAAGCCTGCTAGGCACAC
1 TCACCGGCACGAAGCCTGCTAGGCACATAGCCCGAATACACCGGCACGAAGCCTGCTAGGCACAC
21260309 AACCTGAAT
66 AACCTGAAT
*
21260318 TCACCAGCACGAAGCCTGCTA-GCAACATAGCCCGAAT
1 TCACCGGCACGAAGCCTGCTAGGC-ACATAGCCCGAAT
21260355 TACTTAAATG
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
73 2 0.02
74 84 0.86
75 12 0.12
ACGTcount: A:0.30, C:0.32, G:0.23, T:0.15
Consensus pattern (74 bp):
TCACCGGCACGAAGCCTGCTAGGCACATAGCCCGAATACACCGGCACGAAGCCTGCTAGGCACAC
AACCTGAAT
Found at i:21260355 original size:37 final size:37
Alignment explanation
Indices: 21260169--21260355 Score: 232
Period size: 37 Copynumber: 5.0 Consensus size: 37
21260159 AGTTCTCCAA
* * * *
21260169 TCACCGGCACAAAGGCCTGCTAGGCATATAGCCCGAGT
1 TCACCGGCACGAA-GCCTGCTAGGCACATAGCCTGAAT
* *
21260207 ACACCGGCACGAAGCCTGCTAGGCACATAGGCTGAAT
1 TCACCGGCACGAAGCCTGCTAGGCACATAGCCTGAAT
*
21260244 TCACCGGCACGAAGCCTGTTAGGCACATAGCCTGAAT
1 TCACCGGCACGAAGCCTGCTAGGCACATAGCCTGAAT
* * * *
21260281 ACACCGGCACTAAGCCTGCTAGGCACACAACCTGAAT
1 TCACCGGCACGAAGCCTGCTAGGCACATAGCCTGAAT
* *
21260318 TCACCAGCACGAAGCCTGCTA-GCAACATAGCCCGAAT
1 TCACCGGCACGAAGCCTGCTAGGC-ACATAGCCTGAAT
21260355 T
1 T
21260356 ACTTAAATGA
Statistics
Matches: 128, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
36 2 0.02
37 115 0.90
38 11 0.09
ACGTcount: A:0.29, C:0.32, G:0.23, T:0.16
Consensus pattern (37 bp):
TCACCGGCACGAAGCCTGCTAGGCACATAGCCTGAAT
Found at i:21262996 original size:27 final size:28
Alignment explanation
Indices: 21262943--21262997 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
21262933 TCAATCGTAT
*
21262943 CTCAATTTAATTTAAAAATTATCAAATA
1 CTCAATTTAATTTAAAAATAATCAAATA
*
21262971 CTCAA-TTATTTTACAAAATAAT-AAATA
1 CTCAATTTAATTTA-AAAATAATCAAATA
21262998 TATTGTGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (28 bp):
CTCAATTTAATTTAAAAATAATCAAATA
Found at i:21263047 original size:22 final size:22
Alignment explanation
Indices: 21263022--21263064 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
21263012 TTTTATCTTT
21263022 ATAAAATTTAA-AAGTACAACTC
1 ATAAAATTTAATAAG-ACAACTC
**
21263044 ATAATCTTTAATAAGACAACT
1 ATAAAATTTAATAAGACAACT
21263065 TTACAATTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.30
Consensus pattern (22 bp):
ATAAAATTTAATAAGACAACTC
Found at i:21263723 original size:28 final size:28
Alignment explanation
Indices: 21263657--21263725 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
21263647 CAAATGATTT
*
21263657 TAAAATTATTAACATTATTTTTTAAAATA
1 TAAAATTATTAA-AATATTTTTTAAAATA
*
21263686 TAAAA-AATTAAAATATTTTTTAAAATA
1 TAAAATTATTAAAATATTTTTTAAAATA
21263713 TAAAATTATTAAA
1 TAAAATTATTAAA
21263726 TAATTTTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 20 0.56
28 11 0.31
29 5 0.14
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (28 bp):
TAAAATTATTAAAATATTTTTTAAAATA
Found at i:21269438 original size:2 final size:2
Alignment explanation
Indices: 21269431--21269455 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
21269421 GCTTGTGGTT
21269431 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
21269456 GATTAGGTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:21272258 original size:15 final size:15
Alignment explanation
Indices: 21272221--21272258 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
21272211 CCAATTAGTC
21272221 TAAAAAA-ATTTCTA
1 TAAAAAATATTTCTA
*
21272235 TCAAAAAATATTTTTA
1 T-AAAAAATATTTCTA
21272251 TAAAAAAT
1 TAAAAAAT
21272259 TCAATTCCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 13 0.62
16 7 0.33
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAAAAATATTTCTA
Found at i:21276837 original size:17 final size:17
Alignment explanation
Indices: 21276815--21276850 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
21276805 GGTGGAGAAT
* *
21276815 TTGTTCGTTGAGAGTTC
1 TTGTTCGTAGAGAATTC
21276832 TTGTTCGTAGAGAATTC
1 TTGTTCGTAGAGAATTC
21276849 TT
1 TT
21276851 ATCAAGGTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.11, G:0.25, T:0.47
Consensus pattern (17 bp):
TTGTTCGTAGAGAATTC
Found at i:21277789 original size:34 final size:34
Alignment explanation
Indices: 21277714--21277789 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
21277704 AGTAAATAAC
* * *
21277714 ATTTGGGCAAGGTAAAAAGTAAAATATTAAAAAT
1 ATTTGGGTAAGATAAAAAGTAAAAAATTAAAAAT
21277748 ATTTGGGTAAGATAAAAAGTAAAAAATTAAAAAT
1 ATTTGGGTAAGATAAAAAGTAAAAAATTAAAAAT
21277782 ATTTGGGT
1 ATTTGGGT
21277790 TTAGTTTATG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.51, C:0.01, G:0.18, T:0.29
Consensus pattern (34 bp):
ATTTGGGTAAGATAAAAAGTAAAAAATTAAAAAT
Found at i:21278051 original size:23 final size:23
Alignment explanation
Indices: 21278008--21278052 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
21277998 AAAAAAATTC
**
21278008 AACTCGATTCGTTTAACTCGAAT
1 AACTCGATTCGAATAACTCGAAT
*
21278031 AACTCGATTCGAATAATTCGAA
1 AACTCGATTCGAATAACTCGAA
21278053 ATTCAAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (23 bp):
AACTCGATTCGAATAACTCGAAT
Found at i:21280628 original size:25 final size:25
Alignment explanation
Indices: 21280599--21280733 Score: 112
Period size: 25 Copynumber: 5.2 Consensus size: 25
21280589 AATTTGATTC
21280599 TGGCTCATAAGAGCGTAATTCTATT
1 TGGCTCATAAGAGCGTAATTCTATT
* * *
21280624 TGGCTCGTAATAGCGAAATTCTGATTT
1 TGGCTCATAAGAGCGTAATTCT-A-TT
* * *
21280651 TGGCTCACAAGAGCGTAATTTTGTT
1 TGGCTCATAAGAGCGTAATTCTATT
* *
21280676 TGGCTCATAAGAGCG-ATACTCTGTT
1 TGGCTCATAAGAGCGTA-ATTCTATT
* *
21280701 TGGGCTCATAAAAAC-TGAATTCTATT
1 T-GGCTCATAAGAGCGT-AATTCTATT
21280727 TAGGCTC
1 T-GGCTC
21280734 GTATAAGTTA
Statistics
Matches: 87, Mismatches: 17, Indels: 11
0.76 0.15 0.10
Matches are distributed among these distances:
24 1 0.01
25 42 0.48
26 24 0.28
27 20 0.23
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (25 bp):
TGGCTCATAAGAGCGTAATTCTATT
Found at i:21280678 original size:52 final size:52
Alignment explanation
Indices: 21280589--21280708 Score: 145
Period size: 52 Copynumber: 2.3 Consensus size: 52
21280579 TGATGAAGAT
* * * *
21280589 AATT-TGATTCTGGCTCATAAGAGCGTAATTCTATTTGGCTCGTAATAGCGA
1 AATTCTGATTTTGGCTCACAAGAGCGTAATTCTATTTGGCTCATAAGAGCGA
* *
21280640 AATTCTGATTTTGGCTCACAAGAGCGTAATTTTGTTTGGCTCATAAGAGCGA
1 AATTCTGATTTTGGCTCACAAGAGCGTAATTCTATTTGGCTCATAAGAGCGA
* * *
21280692 TACTCTG-TTTGGGCTCA
1 AATTCTGATTTTGGCTCA
21280709 TAAAAACTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 13 0.22
52 46 0.78
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.36
Consensus pattern (52 bp):
AATTCTGATTTTGGCTCACAAGAGCGTAATTCTATTTGGCTCATAAGAGCGA
Found at i:21281450 original size:21 final size:21
Alignment explanation
Indices: 21281438--21281493 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
21281428 AGTCACACTT
21281438 GTATCGGTAGAAGTATCACAA
1 GTATCGGTAGAAGTATCACAA
*
21281459 GTATCGATAGAAGTATCACAA
1 GTATCGGTAGAAGTATCACAA
21281480 GTATCGGTAGAAGT
1 GTATCGGTAGAAGT
21281494 CCGCACTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (21 bp):
GTATCGGTAGAAGTATCACAA
Found at i:21286987 original size:139 final size:139
Alignment explanation
Indices: 21286737--21287016 Score: 517
Period size: 139 Copynumber: 2.0 Consensus size: 139
21286727 TAGAGCAACG
21286737 TTCATAAAGGATTAAGAGAAGCTAGTATTGGAATTCACATCCTAGTCTTAGAGAAATAATTTTTT
1 TTCATAAAGGATTAAGAGAAGCTAGTATTGGAATTCACATCCTAGTCTTAGAGAAATAATTTTTT
*
21286802 TAGGTTGAGGTATCCTTAAGTTTGCTCTCGAAAGAAGCAAACCACGATAGATCTATCCTGATTAG
66 TAGGTTGAGGTATCCTTAAGTTTGCTCTCGAAAGAAGCAAACCACGATAGATCTATCCTAATTAG
21286867 TAAAACAAT
131 TAAAACAAT
*
21286876 TTCATAAAGGATTAAGAGAAGCTAGTATTGGAATTCACATCCTAGTCTTATAGAAAT-ATTTTGT
1 TTCATAAAGGATTAAGAGAAGCTAGTATTGGAATTCACATCCTAGTCTTAGAGAAATAATTTT-T
*
21286940 TTAGGTTGAGGTATCCTTAAGTTTGCTCTCGAAAGAAGCACACCACGATAGATCTATCCTAATTA
65 TTAGGTTGAGGTATCCTTAAGTTTGCTCTCGAAAGAAGCAAACCACGATAGATCTATCCTAATTA
21287005 GTAAAACAAT
130 GTAAAACAAT
21287015 TT
1 TT
21287017 AACTATTGCC
Statistics
Matches: 137, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
138 5 0.04
139 132 0.96
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (139 bp):
TTCATAAAGGATTAAGAGAAGCTAGTATTGGAATTCACATCCTAGTCTTAGAGAAATAATTTTTT
TAGGTTGAGGTATCCTTAAGTTTGCTCTCGAAAGAAGCAAACCACGATAGATCTATCCTAATTAG
TAAAACAAT
Found at i:21288144 original size:21 final size:21
Alignment explanation
Indices: 21288118--21288159 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
21288108 CAAATAATGA
21288118 CAAAAAGGATCGATACCTTTT
1 CAAAAAGGATCGATACCTTTT
** *
21288139 CAAAAATTATCGATACGTTTT
1 CAAAAAGGATCGATACCTTTT
21288160 ATTATGTATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (21 bp):
CAAAAAGGATCGATACCTTTT
Found at i:21290554 original size:36 final size:36
Alignment explanation
Indices: 21290415--21290542 Score: 220
Period size: 36 Copynumber: 3.6 Consensus size: 36
21290405 TGATCGTTAT
*
21290415 TCATTTTACTCTCTGTTGACTCTAAAGTCATAATGC
1 TCATTTTACTCTCTGTTGACTCTAAAGTCATGATGC
*
21290451 TCATTTTACTCTCTGCTGACTCTAAAGTCATGATGC
1 TCATTTTACTCTCTGTTGACTCTAAAGTCATGATGC
21290487 TCATTTTACTCTCTGTTGACTCTAAAGTCATGATGC
1 TCATTTTACTCTCTGTTGACTCTAAAGTCATGATGC
* *
21290523 TCATTTTACTCCCTATTGAC
1 TCATTTTACTCTCTGTTGAC
21290543 CCAAAGGTCA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 87 1.00
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (36 bp):
TCATTTTACTCTCTGTTGACTCTAAAGTCATGATGC
Found at i:21292768 original size:28 final size:28
Alignment explanation
Indices: 21292724--21292867 Score: 166
Period size: 28 Copynumber: 5.1 Consensus size: 28
21292714 CTGCAACTGT
21292724 TTTTCCAGATTTTACAGTTTTACCACTA
1 TTTTCCAGATTTTACAGTTTTACCACTA
* *
21292752 TTTTCCAGATTTCACAGTTTTGCCACTA
1 TTTTCCAGATTTTACAGTTTTACCACTA
*
21292780 CTTTT-CAGATTTTACAGTTTTGCCACTA
1 -TTTTCCAGATTTTACAGTTTTACCACTA
* *
21292808 TTTTTCCAAATTTTACA-ATTTAGCCACTGA
1 -TTTTCCAGATTTTACAGTTTTA-CCACT-A
* * *
21292838 TTTTCCAGATTTTATAGTTCTATCACTA
1 TTTTCCAGATTTTACAGTTTTACCACTA
21292866 TT
1 TT
21292868 CTTTAAAAAA
Statistics
Matches: 99, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
28 58 0.59
29 37 0.37
30 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.08, T:0.47
Consensus pattern (28 bp):
TTTTCCAGATTTTACAGTTTTACCACTA
Found at i:21292835 original size:57 final size:57
Alignment explanation
Indices: 21292719--21292867 Score: 185
Period size: 57 Copynumber: 2.6 Consensus size: 57
21292709 TAGTTCTGCA
* * * *
21292719 ACTGTTTTTCCAGATTTTACAGTTTTACCACTATTTTCCAGATTTCACAGTTTTGCC
1 ACTGATTTTCCAGATTTTACAGTTTTACCACTATTTTCCAAATTTCACAATTTAGCC
* *
21292776 ACT-ACTTTT-CAGATTTTACAGTTTTGCCACTATTTTTCCAAATTTTACAATTTAGCC
1 ACTGA-TTTTCCAGATTTTACAGTTTTACCACTA-TTTTCCAAATTTCACAATTTAGCC
* * *
21292833 ACTGATTTTCCAGATTTTATAGTTCTATCACTATT
1 ACTGATTTTCCAGATTTTACAGTTTTACCACTATT
21292868 CTTTAAAAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
56 22 0.28
57 36 0.46
58 20 0.26
ACGTcount: A:0.24, C:0.21, G:0.09, T:0.46
Consensus pattern (57 bp):
ACTGATTTTCCAGATTTTACAGTTTTACCACTATTTTCCAAATTTCACAATTTAGCC
Found at i:21294352 original size:3 final size:3
Alignment explanation
Indices: 21294344--21294380 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
21294334 CTCGCCAACG
21294344 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
21294381 GTCGTTTTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:21297461 original size:20 final size:20
Alignment explanation
Indices: 21297430--21297483 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
21297420 AAACCCAATG
* **
21297430 GTATCGAAATTTTTATACGA
1 GTATCAAAATTTTTATAAAA
*
21297450 GTATCAATATTTTTATAAAA
1 GTATCAAAATTTTTATAAAA
21297470 GTATCAAAATTTTT
1 GTATCAAAATTTTT
21297484 GAAAGGGATA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.44
Consensus pattern (20 bp):
GTATCAAAATTTTTATAAAA
Found at i:21298936 original size:3 final size:3
Alignment explanation
Indices: 21298928--21298959 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
21298918 TGGGTTGATG
*
21298928 GAA GAA GAA GAA GAA GAT GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
21298960 GACGATAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.34, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:21302843 original size:21 final size:21
Alignment explanation
Indices: 21302763--21302843 Score: 60
Period size: 21 Copynumber: 3.9 Consensus size: 21
21302753 AAAATAGTAC
*
21302763 ATACTTCTATCGATACT-TGT
1 ATACTTCTACCGATACTATGT
* *
21302783 GATAGTTCTACCGATACAAGTGT
1 -ATACTTCTACCGATACTA-TGT
* * *
21302806 A-ACATCTACTGAAACTAT-T
1 ATACTTCTACCGATACTATGT
21302825 AATACTTCTACCGATACTA
1 -ATACTTCTACCGATACTA
21302844 AAAACTCTAG
Statistics
Matches: 45, Mismatches: 11, Indels: 8
0.70 0.17 0.12
Matches are distributed among these distances:
19 1 0.02
20 2 0.04
21 38 0.84
22 1 0.02
23 3 0.07
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (21 bp):
ATACTTCTACCGATACTATGT
Found at i:21310879 original size:36 final size:36
Alignment explanation
Indices: 21310832--21310968 Score: 168
Period size: 36 Copynumber: 3.8 Consensus size: 36
21310822 TCAAAGGAAA
21310832 GCATACGTCTCGATTAGAGCGTATTGCTATGATGTT
1 GCATACGTCTCGATTAGAGCGTATTGCTATGATGTT
* ** *
21310868 GCATACGTCTCGGTTAGAGCGTAGGGCTAAGATGTT
1 GCATACGTCTCGATTAGAGCGTATTGCTATGATGTT
*
21310904 GCATATGTCTCGATTAGAGCGTATTGCTATGAAT-TT
1 GCATACGTCTCGATTAGAGCGTATTGCTATG-ATGTT
* * * * *
21310940 GCTTATGTCTCGGTTAGAGCATAATGCTA
1 GCATACGTCTCGATTAGAGCGTATTGCTA
21310969 AATGATCGCT
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
36 85 0.98
37 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.34
Consensus pattern (36 bp):
GCATACGTCTCGATTAGAGCGTATTGCTATGATGTT
Found at i:21310969 original size:72 final size:72
Alignment explanation
Indices: 21310832--21310995 Score: 208
Period size: 72 Copynumber: 2.3 Consensus size: 72
21310822 TCAAAGGAAA
* * *
21310832 GCATACGTCTCGATTAGAGCGTATTGCTATGATGTTGCATACGTCTCGGTTAGAGCGTAGGGCTA
1 GCATATGTCTCGATTAGAGCGTATTGCTATGATGTTGCATACGTCTCGGTTAGAGCATAAGGCTA
*
21310897 AGATG-TT
66 A-ATGATC
* * *
21310904 GCATATGTCTCGATTAGAGCGTATTGCTATGAAT-TTGCTTATGTCTCGGTTAGAGCATAATGCT
1 GCATATGTCTCGATTAGAGCGTATTGCTATG-ATGTTGCATACGTCTCGGTTAGAGCATAAGGCT
21310968 AAATGATC
65 AAATGATC
*
21310976 GCTTATGTCTC-AGTTAGAGC
1 GCATATGTCTCGA-TTAGAGC
21310996 ATAAGGTCAT
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
71 4 0.05
72 75 0.93
73 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (72 bp):
GCATATGTCTCGATTAGAGCGTATTGCTATGATGTTGCATACGTCTCGGTTAGAGCATAAGGCTA
AATGATC
Found at i:21310980 original size:36 final size:36
Alignment explanation
Indices: 21310838--21310999 Score: 125
Period size: 36 Copynumber: 4.5 Consensus size: 36
21310828 GAAAGCATAC
* * * * * *
21310838 GTCTCGATTAGAGCGTATTGCTATGATG-TTGCATAC
1 GTCTCGGTTAGAGCATAATGCTA-AATGATTGCTTAT
* ** *
21310874 GTCTCGGTTAGAGCGTAGGGCTAAGATG-TTGCATAT
1 GTCTCGGTTAGAGCATAATGCTAA-ATGATTGCTTAT
* * *
21310910 GTCTCGATTAGAGCGTATTGCT--ATGAATTTGCTTAT
1 GTCTCGGTTAGAGCATAATGCTAAATG-A-TTGCTTAT
*
21310946 GTCTCGGTTAGAGCATAATGCTAAATGATCGCTTAT
1 GTCTCGGTTAGAGCATAATGCTAAATGATTGCTTAT
*
21310982 GTCTCAGTTAGAGCATAA
1 GTCTCGGTTAGAGCATAA
21311000 GGTCATTTCA
Statistics
Matches: 106, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
33 3 0.03
36 99 0.93
37 1 0.01
38 3 0.03
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (36 bp):
GTCTCGGTTAGAGCATAATGCTAAATGATTGCTTAT
Found at i:21314255 original size:16 final size:16
Alignment explanation
Indices: 21314234--21314292 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 16
21314224 TGGTTCGCCA
21314234 TAATGAAATAAAACTG
1 TAATGAAATAAAACTG
* *
21314250 TAATGAAATAGAGCTG
1 TAATGAAATAAAACTG
* * *
21314266 CAATGTAATAGAACTG
1 TAATGAAATAAAACTG
*
21314282 TAATGGAATAA
1 TAATGAAATAA
21314293 TGCTGTAATC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.49, C:0.07, G:0.19, T:0.25
Consensus pattern (16 bp):
TAATGAAATAAAACTG
Found at i:21327239 original size:10 final size:9
Alignment explanation
Indices: 21327210--21327241 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
21327200 ATTTTTTTCA
*
21327210 TTTAAACTT
1 TTTAAAATT
21327219 TTTAAAATT
1 TTTAAAATT
21327228 TTTAAAATT
1 TTTAAAATT
21327237 TTTAA
1 TTTAA
21327242 TAAAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (9 bp):
TTTAAAATT
Found at i:21329600 original size:7 final size:7
Alignment explanation
Indices: 21329588--21329614 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
21329578 GAGCAAACTT
21329588 CCCCTTC
1 CCCCTTC
21329595 CCCCTTC
1 CCCCTTC
21329602 CCCCTTC
1 CCCCTTC
21329609 CCCCTT
1 CCCCTT
21329615 TCTTGCCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.70, G:0.00, T:0.30
Consensus pattern (7 bp):
CCCCTTC
Found at i:21330575 original size:3 final size:3
Alignment explanation
Indices: 21330567--21330595 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
21330557 TCTACAGATA
21330567 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
21330596 ATGTCTAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:21335956 original size:11 final size:11
Alignment explanation
Indices: 21335942--21336016 Score: 51
Period size: 11 Copynumber: 7.5 Consensus size: 11
21335932 AAAAATAAAA
21335942 ATAAAAAAATT
1 ATAAAAAAATT
21335953 AT---AAAATT
1 ATAAAAAAATT
*
21335961 TTAATAAAAA--
1 ATAA-AAAAATT
21335971 AT-AAA-AATT
1 ATAAAAAAATT
*
21335980 AGAAAAAAATT
1 ATAAAAAAATT
*
21335991 AT--AAAAATC
1 ATAAAAAAATT
21336000 ATAAAAAAATT
1 ATAAAAAAATT
21336011 ATAAAA
1 ATAAAA
21336017 CTTTTTGAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 20
0.65 0.08 0.27
Matches are distributed among these distances:
7 2 0.04
8 9 0.19
9 10 0.21
10 4 0.08
11 19 0.40
12 4 0.08
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.27
Consensus pattern (11 bp):
ATAAAAAAATT
Found at i:21335958 original size:9 final size:9
Alignment explanation
Indices: 21335922--21336016 Score: 56
Period size: 9 Copynumber: 10.4 Consensus size: 9
21335912 ATATGTGACA
*
21335922 AAAAACTAT
1 AAAAATTAT
21335931 AAAAA--AT
1 AAAAATTAT
*
21335938 AAAAA-TAA
1 AAAAATTAT
21335946 AAAAATTAT
1 AAAAATTAT
*
21335955 AAAATTTTAAT
1 AAAA-ATT-AT
21335966 AAAAA--AT
1 AAAAATTAT
*
21335973 AAAAATTAGAA
1 AAAAATT--AT
21335984 AAAAATTAT
1 AAAAATTAT
*
21335993 AAAAATCATAA
1 AAAAAT--TAT
21336004 AAAAATTAT
1 AAAAATTAT
21336013 AAAA
1 AAAA
21336017 CTTTTTGAAC
Statistics
Matches: 68, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
7 14 0.21
8 6 0.09
9 24 0.35
10 2 0.03
11 22 0.32
ACGTcount: A:0.73, C:0.02, G:0.01, T:0.24
Consensus pattern (9 bp):
AAAAATTAT
Found at i:21336008 original size:38 final size:35
Alignment explanation
Indices: 21335929--21336008 Score: 99
Period size: 38 Copynumber: 2.2 Consensus size: 35
21335919 ACAAAAAACT
**
21335929 ATAAAAAATAAAAATAAAAAAATTATAAAATTTTA
1 ATAAAAAATAAAAATAAAAAAATTATAAAATCATA
21335964 ATAAAAAATAAAAATTAGAAAAAAATTATAAAAATCATA
1 ATAAAAAATAAAAA-T--AAAAAAATTAT-AAAATCATA
21336003 A-AAAAA
1 ATAAAAA
21336009 TTATAAAACT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
35 14 0.36
36 1 0.03
38 16 0.41
39 8 0.21
ACGTcount: A:0.74, C:0.01, G:0.01, T:0.24
Consensus pattern (35 bp):
ATAAAAAATAAAAATAAAAAAATTATAAAATCATA
Found at i:21336052 original size:20 final size:20
Alignment explanation
Indices: 21335942--21336056 Score: 110
Period size: 20 Copynumber: 5.8 Consensus size: 20
21335932 AAAAATAAAA
21335942 ATAAAAAAATTAT-AAAATT
1 ATAAAAAAATTATAAAAATT
*
21335961 TTAATAAAAA--ATAAAAATT
1 ATAA-AAAAATTATAAAAATT
* *
21335980 AGAAAAAAATTATAAAAATC
1 ATAAAAAAATTATAAAAATT
*
21336000 ATAAAAAAATTATAAAACTT
1 ATAAAAAAATTATAAAAATT
* ** ***
21336020 TTTGAACTTTTATAAAAATT
1 ATAAAAAAATTATAAAAATT
21336040 ATAAAAAAATTATAAAA
1 ATAAAAAAATTATAAAA
21336057 TGCATCAAAA
Statistics
Matches: 72, Mismatches: 20, Indels: 7
0.73 0.20 0.07
Matches are distributed among these distances:
18 7 0.10
19 11 0.15
20 54 0.75
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (20 bp):
ATAAAAAAATTATAAAAATT
Found at i:21336277 original size:19 final size:20
Alignment explanation
Indices: 21336253--21336350 Score: 66
Period size: 20 Copynumber: 5.2 Consensus size: 20
21336243 GAATCTTATA
21336253 TTTCTTA-ATTTTTTATAAT
1 TTTCTTATATTTTTTATAAT
* * *
21336272 TTTCTTACGATTTTATA-AAA
1 TTTCTTA-TATTTTTTATAAT
*
21336292 TTTCATA-ATTTTTT-T-AT
1 TTTCTTATATTTTTTATAAT
*
21336309 ATTTC-TATATATTTTATAAT
1 -TTTCTTATATTTTTTATAAT
* *
21336329 TTTTTTATAATTTTTAT-AT
1 TTTCTTATATTTTTTATAAT
21336348 TTT
1 TTT
21336351 TTTTCTAATT
Statistics
Matches: 62, Mismatches: 9, Indels: 16
0.71 0.10 0.18
Matches are distributed among these distances:
17 3 0.05
18 16 0.26
19 16 0.26
20 20 0.32
21 7 0.11
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.65
Consensus pattern (20 bp):
TTTCTTATATTTTTTATAAT
Found at i:21336317 original size:29 final size:29
Alignment explanation
Indices: 21336248--21336346 Score: 105
Period size: 29 Copynumber: 3.4 Consensus size: 29
21336238 TTTACGAATC
* *
21336248 TTATATTTCT-TAATTTTTTATAATTTTC
1 TTATATTTCTATAATATTTTATAATTTTT
* * *
21336276 TTACGATTT-TATAAAATTTCATAATTTTT
1 TTA-TATTTCTATAATATTTTATAATTTTT
21336305 TTATATTTCTAT-ATATTTTATAATTTTT
1 TTATATTTCTATAATATTTTATAATTTTT
*
21336333 TTATAATTTTTATA
1 TTAT-ATTTCTATA
21336347 TTTTTTTTCT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
28 26 0.46
29 31 0.54
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (29 bp):
TTATATTTCTATAATATTTTATAATTTTT
Found at i:21336336 original size:11 final size:11
Alignment explanation
Indices: 21336320--21336363 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
21336310 TTTCTATATA
21336320 TTTTATAATTT
1 TTTTATAATTT
21336331 TTTTATAA--T
1 TTTTATAATTT
*
21336340 TTTTATATTTT
1 TTTTATAATTT
*
21336351 TTTTCTAATTT
1 TTTTATAATTT
21336362 TT
1 TT
21336364 AATAAAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
9 8 0.29
11 20 0.71
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:21336337 original size:20 final size:19
Alignment explanation
Indices: 21336263--21336366 Score: 68
Period size: 20 Copynumber: 5.5 Consensus size: 19
21336253 TTTCTTAATT
* **
21336263 TTTTATAATTTTCTTACGA
1 TTTTATAATTTTTTTATAA
** *
21336282 TTTTATAA-AATTTCATAA
1 TTTTATAATTTTTTTATAA
* * * *
21336300 TTTTTTTATATTTCTATATA
1 TTTTATAATTTTTTTATA-A
21336320 TTTTATAATTTTTTTATAA
1 TTTTATAATTTTTTTATAA
* *
21336339 TTTTTATATTTTTTTTCTAA
1 -TTTTATAATTTTTTTATAA
21336359 TTTT-TAAT
1 TTTTATAAT
21336367 AAAATTTAAA
Statistics
Matches: 64, Mismatches: 18, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
18 13 0.20
19 19 0.30
20 32 0.50
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.65
Consensus pattern (19 bp):
TTTTATAATTTTTTTATAA
Found at i:21336352 original size:9 final size:9
Alignment explanation
Indices: 21336301--21336352 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
21336291 ATTTCATAAT
21336301 TTTTTTATA
1 TTTTTTATA
*
21336310 -TTTCTATA
1 TTTTTTATA
*
21336318 TATTTTATAA
1 TTTTTTAT-A
21336328 TTTTTTTATA
1 -TTTTTTATA
*
21336338 ATTTTTATA
1 TTTTTTATA
21336347 TTTTTT
1 TTTTTT
21336353 TTCTAATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
8 7 0.21
9 18 0.53
10 2 0.06
11 7 0.21
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTTTATA
Found at i:21336384 original size:31 final size:31
Alignment explanation
Indices: 21336349--21336415 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 31
21336339 TTTTTATATT
*
21336349 TTTTTTCTA-ATTTTTAATAAAATTTAAATAG
1 TTTTTTATAGATTTTTAATAAAATTT-AATAG
* *
21336380 -TTTTTATAGTTTTTTTATTAAAATTTAATAG
1 TTTTTTATAG-ATTTTTAATAAAATTTAATAG
21336411 TTTTT
1 TTTTT
21336416 ATAACTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
30 7 0.23
31 5 0.17
32 18 0.60
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.61
Consensus pattern (31 bp):
TTTTTTATAGATTTTTAATAAAATTTAATAG
Found at i:21336416 original size:31 final size:32
Alignment explanation
Indices: 21336359--21336418 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
21336349 TTTTTTCTAA
21336359 TTTTTAATAAAATTTAAATAGTTTTTATAGTT
1 TTTTTAATAAAATTTAAATAGTTTTTATAGTT
*
21336391 TTTTTATTAAAATTT-AATAGTTTTTATA
1 TTTTTAATAAAATTTAAATAGTTTTTATA
21336419 ACTTTTATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (32 bp):
TTTTTAATAAAATTTAAATAGTTTTTATAGTT
Found at i:21340594 original size:16 final size:16
Alignment explanation
Indices: 21340573--21340605 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
21340563 ATGTTTTTCT
21340573 TACTCATGTCATGTGA
1 TACTCATGTCATGTGA
21340589 TACTCATGTCATGTGA
1 TACTCATGTCATGTGA
21340605 T
1 T
21340606 GATAGGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (16 bp):
TACTCATGTCATGTGA
Found at i:21350577 original size:18 final size:18
Alignment explanation
Indices: 21350554--21350592 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
21350544 GTTATTTTTT
*
21350554 AAAAAAATAAAAAATTGA
1 AAAAAAATAAAAAATTCA
*
21350572 AAAAAAATGAAAAATTCA
1 AAAAAAATAAAAAATTCA
21350590 AAA
1 AAA
21350593 CAATTAGTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (18 bp):
AAAAAAATAAAAAATTCA
Found at i:21350649 original size:11 final size:11
Alignment explanation
Indices: 21350615--21350672 Score: 62
Period size: 11 Copynumber: 5.2 Consensus size: 11
21350605 TCATTTTCAT
21350615 TTTTAGTTTTA
1 TTTTAGTTTTA
*
21350626 GTTTTAGTCTTA
1 -TTTTAGTTTTA
*
21350638 TTTTATTTTTA
1 TTTTAGTTTTA
*
21350649 TTTTATTTTTA
1 TTTTAGTTTTA
* *
21350660 ATTTAATTTTA
1 TTTTAGTTTTA
21350671 TT
1 TT
21350673 ATGCACTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
11 30 0.75
12 10 0.25
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (11 bp):
TTTTAGTTTTA
Found at i:21351084 original size:23 final size:24
Alignment explanation
Indices: 21351053--21351100 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
21351043 TTGATTTGTG
*
21351053 AATCTTTTATG-TATTGGGTGATTT
1 AATCTTTTAAGATA-TGGGTGATTT
21351077 AATC-TTTAAGATATGGGTGATTT
1 AATCTTTTAAGATATGGGTGATTT
21351100 A
1 A
21351101 GTTTTTAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.27, C:0.04, G:0.21, T:0.48
Consensus pattern (24 bp):
AATCTTTTAAGATATGGGTGATTT
Found at i:21351601 original size:10 final size:10
Alignment explanation
Indices: 21351587--21351634 Score: 53
Period size: 10 Copynumber: 4.6 Consensus size: 10
21351577 GAAAAAAGAA
21351587 AAAAAAAGTCG
1 AAAAAAA-TCG
21351598 AAAAAAAT-G
1 AAAAAAATCG
21351607 AAAAGAAAATCG
1 -AAA-AAAATCG
*
21351619 AAAAAAATTG
1 AAAAAAATCG
21351629 AAAAAA
1 AAAAAA
21351635 GAAAAAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
9 1 0.03
10 16 0.48
11 15 0.45
12 1 0.03
ACGTcount: A:0.73, C:0.04, G:0.12, T:0.10
Consensus pattern (10 bp):
AAAAAAATCG
Found at i:21351604 original size:21 final size:21
Alignment explanation
Indices: 21351578--21351634 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
21351568 TATTATTTAG
21351578 AAAAAA-GAAAAAAAAAGTCGA
1 AAAAAATGAAAAAAAAA-TCGA
*
21351599 AAAAAATGAAAAGAAAATCGA
1 AAAAAATGAAAAAAAAATCGA
21351620 AAAAAATTGAAAAAA
1 AAAAAA-TGAAAAAA
21351635 GAAAAAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 16 0.50
22 16 0.50
ACGTcount: A:0.75, C:0.04, G:0.12, T:0.09
Consensus pattern (21 bp):
AAAAAATGAAAAAAAAATCGA
Found at i:21351638 original size:17 final size:18
Alignment explanation
Indices: 21351618--21351652 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
21351608 AAAGAAAATC
21351618 GAAAAAAATT-GAAAAAA
1 GAAAAAAATTGGAAAAAA
21351635 GAAAAAAATTGGAAAAAA
1 GAAAAAAATTGGAAAAAA
21351653 AGAAGAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.11
Consensus pattern (18 bp):
GAAAAAAATTGGAAAAAA
Found at i:21351649 original size:11 final size:9
Alignment explanation
Indices: 21351587--21351671 Score: 52
Period size: 11 Copynumber: 9.0 Consensus size: 9
21351577 GAAAAAAGAA
21351587 AAAAAAAGTCG
1 AAAAAAA-T-G
21351598 AAAAAAATG
1 AAAAAAATG
21351607 AAAAGAAAATCG
1 -AAA-AAAAT-G
21351619 AAAAAAATTG
1 AAAAAAA-TG
21351629 -AAAAAA-G
1 AAAAAAATG
21351636 AAAAAAATTGG
1 AAAAAAA-T-G
21351647 AAAAAAA-G
1 AAAAAAATG
*
21351655 AAGAAAA-G
1 AAAAAAATG
*
21351663 ATAAAAATG
1 AAAAAAATG
21351672 TGTTTGAGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 20
0.73 0.04 0.24
Matches are distributed among these distances:
7 1 0.02
8 19 0.31
9 8 0.13
10 9 0.15
11 24 0.39
12 1 0.02
ACGTcount: A:0.72, C:0.02, G:0.15, T:0.11
Consensus pattern (9 bp):
AAAAAAATG
Found at i:21352296 original size:25 final size:23
Alignment explanation
Indices: 21352255--21352300 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
21352245 CCAATTAGGG
21352255 AATTATTATTTAGATTTAATTCT
1 AATTATTATTTAGATTTAATTCT
*
21352278 AATTATCTTTTTAGAATTTAATT
1 AATTAT-TATTTAG-ATTTAATT
21352301 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (23 bp):
AATTATTATTTAGATTTAATTCT
Found at i:21357664 original size:14 final size:15
Alignment explanation
Indices: 21357640--21357668 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
21357630 TAAACCAACA
21357640 TAACATTTAATATTT
1 TAACATTTAATATTT
21357655 TAAC-TTTAATATTT
1 TAACATTTAATATTT
21357669 CAACCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (15 bp):
TAACATTTAATATTT
Found at i:21357918 original size:20 final size:19
Alignment explanation
Indices: 21357880--21357919 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
21357870 CGTACGCAAC
*
21357880 TTTAAAAATTAATTATTTT
1 TTTAAAAATTAAATATTTT
*
21357899 TTTAAATATTAAAATATTTT
1 TTTAAAAATT-AAATATTTT
21357919 T
1 T
21357920 ATAATTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTAAAAATTAAATATTTT
Found at i:21357930 original size:10 final size:10
Alignment explanation
Indices: 21357915--21357968 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
21357905 TATTAAAATA
21357915 TTTTTATAAT
1 TTTTTATAAT
*
21357925 TTTTTAAAAT
1 TTTTTATAAT
*
21357935 TTTTAAATAAT
1 TTTT-TATAAT
21357946 TTTTT-TGAAT
1 TTTTTAT-AAT
21357956 TTTTTA-AAT
1 TTTTTATAAT
21357965 TTTT
1 TTTT
21357969 AAAAATTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
9 8 0.22
10 21 0.57
11 8 0.22
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:21357931 original size:21 final size:20
Alignment explanation
Indices: 21357907--21357975 Score: 77
Period size: 21 Copynumber: 3.4 Consensus size: 20
21357897 TTTTTAAATA
21357907 TTAAAATATTTTTATAATTTT
1 TTAAAAT-TTTTTATAATTTT
*
21357928 TTAAAATTTTTAAATAATTTT
1 TTAAAATTTTT-TATAATTTT
**
21357949 TTTGAATTTTTTA-AATTTT
1 TTAAAATTTTTTATAATTTT
*
21357968 TAAAAATT
1 TTAAAATT
21357976 AAATAATTGT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 11 0.28
20 5 0.12
21 24 0.60
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (20 bp):
TTAAAATTTTTTATAATTTT
Found at i:21357941 original size:30 final size:31
Alignment explanation
Indices: 21357896--21357972 Score: 99
Period size: 30 Copynumber: 2.6 Consensus size: 31
21357886 AATTAATTAT
*
21357896 TTTTTTAAA-TATTAAAAT-ATTTTTAT-AA
1 TTTTTTAAATTTTTAAAATAATTTTTATGAA
*
21357924 TTTTTTAAAATTTTT-AAATAATTTTTTTGAA
1 TTTTTT-AAATTTTTAAAATAATTTTTATGAA
21357955 TTTTTTAAATTTTTAAAA
1 TTTTTTAAATTTTTAAAA
21357973 ATTAAATAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
28 6 0.14
29 7 0.17
30 18 0.43
31 11 0.26
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (31 bp):
TTTTTTAAATTTTTAAAATAATTTTTATGAA
Found at i:21357959 original size:22 final size:21
Alignment explanation
Indices: 21357907--21357964 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
21357897 TTTTTAAATA
*
21357907 TTAAAATATTTT-TATAATTTT
1 TTAAAAT-TTTTAAATAATTTT
21357928 TTAAAATTTTTAAATAATTTTT
1 TTAAAATTTTTAAATAA-TTTT
* *
21357950 TTGAATTTTTTAAAT
1 TTAAAATTTTTAAAT
21357965 TTTTAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.12
21 11 0.34
22 17 0.53
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TTAAAATTTTTAAATAATTTT
Found at i:21357974 original size:10 final size:10
Alignment explanation
Indices: 21357907--21357975 Score: 52
Period size: 10 Copynumber: 6.9 Consensus size: 10
21357897 TTTTTAAATA
21357907 TTAAAATATTT
1 TTAAAA-ATTT
*
21357918 TT-ATAATTT
1 TTAAAAATTT
*
21357927 TTTAAAATTT
1 TTAAAAATTT
21357937 TTAAATAATTT
1 TTAAA-AATTT
***
21357948 TTTTGAATTT
1 TTAAAAATTT
*
21357958 TT-TAAATTT
1 TTAAAAATTT
21357967 TTAAAAATT
1 TTAAAAATT
21357976 AAATAATTGT
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
9 14 0.30
10 24 0.51
11 9 0.19
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (10 bp):
TTAAAAATTT
Found at i:21360782 original size:14 final size:14
Alignment explanation
Indices: 21360763--21360789 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
21360753 ATTAATTTCT
21360763 GTAGCTGATGATTG
1 GTAGCTGATGATTG
21360777 GTAGCTGATGATT
1 GTAGCTGATGATT
21360790 TTATGCTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.33, T:0.37
Consensus pattern (14 bp):
GTAGCTGATGATTG
Found at i:21365237 original size:57 final size:57
Alignment explanation
Indices: 21365156--21365264 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 57
21365146 ACTTTCTTTG
* * *
21365156 TAAAGCTTTTACTCCCCTCCCATCTCACTCTCATCT-ACCTCAAACTCATTTCTCCTC
1 TAAAACTTTTACTCCCCTCCCATCTCACTCCCATCTAACC-CAAACCCATTTCTCCTC
* * *
21365213 TAAAACTTTTACTTCCTTCTCATCTCACTCCCATCTAACCCAAACCCATTTC
1 TAAAACTTTTACTCCCCTCCCATCTCACTCCCATCTAACCCAAACCCATTTC
21365265 CCCCCAATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
57 42 0.93
58 3 0.07
ACGTcount: A:0.24, C:0.40, G:0.01, T:0.35
Consensus pattern (57 bp):
TAAAACTTTTACTCCCCTCCCATCTCACTCCCATCTAACCCAAACCCATTTCTCCTC
Found at i:21370692 original size:18 final size:18
Alignment explanation
Indices: 21370669--21370727 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
21370659 CATTTTTTTC
21370669 TTTTTTCAATTTTCTCTT
1 TTTTTTCAATTTTCTCTT
***
21370687 TTTTTTCAATTCAATCTT
1 TTTTTTCAATTTTCTCTT
*
21370705 TTCTTTCAA-TTTCT-TT
1 TTTTTTCAATTTTCTCTT
21370721 TTTTTTC
1 TTTTTTC
21370728 TTTTTCTAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
16 8 0.24
17 2 0.06
18 23 0.70
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTTCAATTTTCTCTT
Found at i:21371644 original size:6 final size:6
Alignment explanation
Indices: 21371616--21371821 Score: 120
Period size: 6 Copynumber: 33.8 Consensus size: 6
21371606 AGAGAGAGAG
* *
21371616 ATAAAA ACTAAAA A-AAACC ATAAGA ATAAAA ATAATGCATA ATA-AA
1 ATAAAA A-TAAAA ATAAA-A ATAAAA ATAAAA ATAA---A-A ATAAAA
* *
21371662 AT-AAA ATCAAAA AT-AAA CTAAAA ATAAAA CTAAAA ATAAAA ATAAAA
1 ATAAAA AT-AAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
* * * * * *
21371709 GT-AAA CTAAAA ATAAAA ATAAAA TTAAAA CTAAAA CTAAAA CTAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
* * * * **
21371756 ATGAAA ATGAAA ATGAAAA A-ATGAA A-AAAA ATGAAAA ATGAAA ATGGAA
1 ATAAAA ATAAAA AT-AAAA ATA-AAA ATAAAA AT-AAAA ATAAAA ATAAAA
*
21371805 ATGAAA ATAAAA ATAAA
1 ATAAAA ATAAAA ATAAA
21371822 TGTACTATTT
Statistics
Matches: 162, Mismatches: 22, Indels: 32
0.75 0.10 0.15
Matches are distributed among these distances:
5 22 0.14
6 112 0.69
7 23 0.14
9 1 0.01
10 4 0.02
ACGTcount: A:0.72, C:0.05, G:0.06, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:21371688 original size:23 final size:24
Alignment explanation
Indices: 21371659--21371821 Score: 115
Period size: 23 Copynumber: 6.8 Consensus size: 24
21371649 AATGCATAAT
*
21371659 AAAATAAAATCAAAAAT-AAACTA
1 AAAATAAAATCAAAAATAAAAATA
21371682 AAAATAAAA-CTAAAAATAAAAATA
1 AAAATAAAATC-AAAAATAAAAATA
* *
21371706 AAAGTAAACT-AAAAATAAAAATA
1 AAAATAAAATCAAAAATAAAAATA
* * *
21371729 AAATTAAAA-CTAAAACTAAAACTA
1 AAAATAAAATC-AAAAATAAAAATA
* *
21371753 AAAATGAAAAT-GAAAATGAAAAAATG
1 AAAAT-AAAATCAAAAAT--AAAAATA
* * *
21371779 AAAA-AAAATGAAAAATGAAAATG
1 AAAATAAAATCAAAAATAAAAATA
*
21371802 GAAATGAAAAT-AAAAATAAA
1 AAAAT-AAAATCAAAAATAAA
21371822 TGTACTATTT
Statistics
Matches: 112, Mismatches: 16, Indels: 23
0.74 0.11 0.15
Matches are distributed among these distances:
22 1 0.01
23 44 0.39
24 44 0.39
25 14 0.12
26 9 0.08
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.17
Consensus pattern (24 bp):
AAAATAAAATCAAAAATAAAAATA
Found at i:21371701 original size:18 final size:17
Alignment explanation
Indices: 21371656--21371821 Score: 138
Period size: 18 Copynumber: 9.4 Consensus size: 17
21371646 AATAATGCAT
21371656 AATAAAAT-AAAATCAAA
1 AATAAAATAAAAAT-AAA
*
21371673 AATAAACTAAAAATAAA
1 AATAAAATAAAAATAAA
*
21371690 ACTAAAAATAAAAATAAA
1 AAT-AAAATAAAAATAAA
* *
21371708 AGTAAACTAAAAATAAA
1 AATAAAATAAAAATAAA
*
21371725 AATAAAATTAAAACTAAA
1 AATAAAA-TAAAAATAAA
* *
21371743 ACTAAAACTAAAAATGAA
1 AATAAAA-TAAAAATAAA
*
21371761 AATGAAAATGAAAAAATGAA
1 AAT-AAAAT--AAAAATAAA
*
21371781 AA-AAAATGAAAAATGAA
1 AATAAAAT-AAAAATAAA
* *
21371798 AATGGAAATGAAAATAAA
1 AAT-AAAATAAAAATAAA
21371816 AATAAA
1 AATAAA
21371822 TGTACTATTT
Statistics
Matches: 123, Mismatches: 18, Indels: 16
0.78 0.11 0.10
Matches are distributed among these distances:
17 43 0.35
18 61 0.50
19 8 0.07
20 11 0.09
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.17
Consensus pattern (17 bp):
AATAAAATAAAAATAAA
Found at i:21373685 original size:17 final size:17
Alignment explanation
Indices: 21373665--21373697 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21373655 TTTTAAGGAC
21373665 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
21373682 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
21373698 TAAGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:21373973 original size:50 final size:51
Alignment explanation
Indices: 21373915--21374047 Score: 146
Period size: 50 Copynumber: 2.6 Consensus size: 51
21373905 CAGTTAAGCT
**
21373915 TGCATCATAAATAATGACATGCATTAAGTAACTTGCATGTTAGTTAAA-TA
1 TGCATCATAAATAATGACATGCATTAAGTAACTCCCATGTTAGTTAAAGTA
** * *
21373965 TGCATCATAAATCCT-ATCATGCATTATGTAACTCCCATGTTAGTTAAAGTT
1 TGCATCATAAATAATGA-CATGCATTAAGTAACTCCCATGTTAGTTAAAGTA
* *
21374016 TGCATCATTAAATCAA-GTCATGCATTTAGTAA
1 TGCATCA-TAAAT-AATGACATGCATTAAGTAA
21374048 TCCATTAGTT
Statistics
Matches: 67, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
49 1 0.01
50 41 0.61
51 8 0.12
52 17 0.25
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (51 bp):
TGCATCATAAATAATGACATGCATTAAGTAACTCCCATGTTAGTTAAAGTA
Found at i:21375285 original size:26 final size:25
Alignment explanation
Indices: 21375249--21375306 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
21375239 AAAAAGTGAA
*
21375249 AAAAAAATAAAAAAATTGAAATATTG
1 AAAAAAATAAAAAAA-TCAAATATTG
*
21375275 AAAAAAATAAAAAAATCAAATTTTG
1 AAAAAAATAAAAAAATCAAATATTG
21375300 AAAAAAA
1 AAAAAAA
21375307 AGAAGAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 15 0.50
26 15 0.50
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (25 bp):
AAAAAAATAAAAAAATCAAATATTG
Found at i:21375286 original size:25 final size:26
Alignment explanation
Indices: 21375249--21375341 Score: 86
Period size: 25 Copynumber: 3.6 Consensus size: 26
21375239 AAAAAGTGAA
* *
21375249 AAAAAAATAAAAAAATTGAAATATTG
1 AAAAAAATAAAAAAAATCAAATATTG
*
21375275 AAAAAAAT-AAAAAAATCAAATTTTG
1 AAAAAAATAAAAAAAATCAAATATTG
*
21375300 AAAAAAAAGAAGAAAAAAATTCAAAT-TT-
1 -AAAAAAA-TA-AAAAAAA-TCAAATATTG
21375328 AAAAAAA-AAAAAAA
1 AAAAAAATAAAAAAA
21375342 TCGAAAGAAG
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
24 6 0.10
25 15 0.26
26 15 0.26
27 7 0.12
29 9 0.16
30 6 0.10
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.18
Consensus pattern (26 bp):
AAAAAAATAAAAAAAATCAAATATTG
Found at i:21375324 original size:30 final size:29
Alignment explanation
Indices: 21375247--21375341 Score: 105
Period size: 26 Copynumber: 3.5 Consensus size: 29
21375237 CGAAAAAGTG
* *
21375247 AAAAAAAAATAAAAAAATTGAAATATTG-
1 AAAAAAAAATAAAAAAATTCAAATTTTGA
21375275 --AAAAAAATAAAAAAA-TCAAATTTTGA
1 AAAAAAAAATAAAAAAATTCAAATTTTGA
*
21375301 AAAAAAAGAAGAAAAAAATTCAAA-TTT-A
1 AAAAAAA-AATAAAAAAATTCAAATTTTGA
21375329 AAAAAAAAA-AAAA
1 AAAAAAAAATAAAA
21375342 TCGAAAGAAG
Statistics
Matches: 59, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
25 8 0.14
26 19 0.32
27 2 0.03
28 13 0.22
29 12 0.20
30 5 0.08
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (29 bp):
AAAAAAAAATAAAAAAATTCAAATTTTGA
Found at i:21375357 original size:53 final size:54
Alignment explanation
Indices: 21375247--21375358 Score: 133
Period size: 52 Copynumber: 2.1 Consensus size: 54
21375237 CGAAAAAGTG
* * ***
21375247 AAAAAAAAATAAAAAAATTGAAATATTGAAAAAAATAAAAAAATCAAATTTTGA
1 AAAAAAAAAGAAAAAAATTCAAATATTGAAAAAAATAAAAAAATCAAATGAAGA
21375301 AAAAAAAGAAGAAAAAAATTCAAAT-TT-AAAAAAA-AAAAAAATCGAAA-GAAGA
1 AAAAAAA-AAGAAAAAAATTCAAATATTGAAAAAAATAAAAAAATC-AAATGAAGA
21375353 AAAAAA
1 AAAAAA
21375359 TTTCGAGTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
52 17 0.33
53 10 0.20
54 9 0.18
55 15 0.29
ACGTcount: A:0.74, C:0.03, G:0.07, T:0.16
Consensus pattern (54 bp):
AAAAAAAAAGAAAAAAATTCAAATATTGAAAAAAATAAAAAAATCAAATGAAGA
Found at i:21376411 original size:19 final size:18
Alignment explanation
Indices: 21376368--21376412 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
21376358 AGAATGTGAG
*
21376368 AAAAGAGATCGAAATTGA
1 AAAAGAAATCGAAATTGA
21376386 AAAAGAAATCGAGAA-TGA
1 AAAAGAAATCGA-AATTGA
21376404 AGAAAGAAA
1 A-AAAGAAA
21376413 AGAAAGAGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.62, C:0.04, G:0.22, T:0.11
Consensus pattern (18 bp):
AAAAGAAATCGAAATTGA
Found at i:21377722 original size:17 final size:17
Alignment explanation
Indices: 21377702--21377734 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21377692 TTTAAGGACT
21377702 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
21377719 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
21377735 TAAGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:21377870 original size:33 final size:33
Alignment explanation
Indices: 21377827--21377913 Score: 156
Period size: 33 Copynumber: 2.6 Consensus size: 33
21377817 AAGATTGTGA
*
21377827 TTTAATTATGTCATGCATTATTAATCTACATCT
1 TTTAAATATGTCATGCATTATTAATCTACATCT
21377860 TTTAAATATGTCATGCATTATTAATCTACATCT
1 TTTAAATATGTCATGCATTATTAATCTACATCT
*
21377893 TTTAAATATGACATGCATTAT
1 TTTAAATATGTCATGCATTAT
21377914 GTGATCTGCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (33 bp):
TTTAAATATGTCATGCATTATTAATCTACATCT
Done.