Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 74 of 135
Found at i:22174246 original size:22 final size:22
Alignment explanation
Indices: 22174221--22174303 Score: 78
Period size: 22 Copynumber: 3.8 Consensus size: 22
22174211 CACCACTTCT
*
22174221 CCACCATAGCACCACCGTACCA
1 CCACCATAGCACCACCATACCA
* *
22174243 CCACCCA-AGTATCACCATACCA
1 CCA-CCATAGCACCACCATACCA
* * *
22174265 CCAGCATAGCATCACCATATCA
1 CCACCATAGCACCACCATACCA
* *
22174287 CCACCCTTGCACCACCA
1 CCACCATAGCACCACCA
22174304 CAAAACTATT
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
21 2 0.04
22 44 0.90
23 3 0.06
ACGTcount: A:0.33, C:0.47, G:0.07, T:0.13
Consensus pattern (22 bp):
CCACCATAGCACCACCATACCA
Found at i:22181506 original size:10 final size:10
Alignment explanation
Indices: 22181491--22181516 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
22181481 ATTTTACGAA
22181491 AATTTGAGGC
1 AATTTGAGGC
22181501 AATTTGAGGC
1 AATTTGAGGC
22181511 AATTTG
1 AATTTG
22181517 TAGCACAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.35
Consensus pattern (10 bp):
AATTTGAGGC
Found at i:22188537 original size:71 final size:71
Alignment explanation
Indices: 22188430--22188573 Score: 243
Period size: 71 Copynumber: 2.0 Consensus size: 71
22188420 TCTTTGCCAC
* * *
22188430 GACATACGTGGGCTATGTCACGACAATGTCTATAGGATAACACTTCACACGGAGATTGATGTCTT
1 GACATACATGGGCTATGTCACGACAACGTCTATAGGATAACACTTCACACGGAGACTGATGTCTT
22188495 TGTCGT
66 TGTCGT
* *
22188501 GACATACATGGGCTATGTCGCGACAACGTCTGTAGGATAACACTTCACACGGAGACTGATGTCTT
1 GACATACATGGGCTATGTCACGACAACGTCTATAGGATAACACTTCACACGGAGACTGATGTCTT
22188566 TGTCGT
66 TGTCGT
22188572 GA
1 GA
22188574 TATAGGTCTT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (71 bp):
GACATACATGGGCTATGTCACGACAACGTCTATAGGATAACACTTCACACGGAGACTGATGTCTT
TGTCGT
Found at i:22191871 original size:245 final size:244
Alignment explanation
Indices: 22191441--22191918 Score: 902
Period size: 245 Copynumber: 2.0 Consensus size: 244
22191431 TGAGCTGAAA
22191441 AAGCTCAGTGAATGACCATAAATTTAATAAGTAAATCACACCAAAAACATACTTTAACCAAGATA
1 AAGCTCAGTGAATGACCATAAATTTAATAAGTAAATCACACCAAAAACATACTTTAACCAAGATA
*
22191506 AATCATGTATCAAATTTTGAGTATATGAATCACAATTTCAATTATATATTCAAGCTCAATTATGG
66 AATAATGTATCAAATTTTGAGTATATGAATCACAATTTCAATTATATATTCAAGCTCAATTATGG
*
22191571 CATTCAATTGATTGAAATTTCTAGCAACATTGCAACATCATAACATCATAATTTCACATTTAATT
131 CATTCAATTGATTGAAATTTCTAGCAACATTGCAACATCATAACATCACAATTTCACATTTAATT
*
22191636 CTATGAATATAAAAAATCACATTTATTATTATATATATATATATATATAT
196 CCATGAATATAAAAAATCACATTTATTA-TATATATATATATATATATAT
*
22191686 AAGCTCAGTGAATGACCATAAATTTAATAAGTAAATCACACTAAAAACATACTTTAACCAAGATA
1 AAGCTCAGTGAATGACCATAAATTTAATAAGTAAATCACACCAAAAACATACTTTAACCAAGATA
*
22191751 AATAATGTATCAAATTTTGAGTATATGAATCACAATTTCAATTATATATTCATGCTCAATTATGG
66 AATAATGTATCAAATTTTGAGTATATGAATCACAATTTCAATTATATATTCAAGCTCAATTATGG
22191816 CATTCAATTGATTGAAATTTCTAGCAACATTGCAACATCATAACATCACAATTTCACATTTAATT
131 CATTCAATTGATTGAAATTTCTAGCAACATTGCAACATCATAACATCACAATTTCACATTTAATT
22191881 CCATGAATATAAAAAATCACATTTATTATATATATATA
196 CCATGAATATAAAAAATCACATTTATTATATATATATA
22191919 ACATAATTTA
Statistics
Matches: 228, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
244 10 0.04
245 218 0.96
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.35
Consensus pattern (244 bp):
AAGCTCAGTGAATGACCATAAATTTAATAAGTAAATCACACCAAAAACATACTTTAACCAAGATA
AATAATGTATCAAATTTTGAGTATATGAATCACAATTTCAATTATATATTCAAGCTCAATTATGG
CATTCAATTGATTGAAATTTCTAGCAACATTGCAACATCATAACATCACAATTTCACATTTAATT
CCATGAATATAAAAAATCACATTTATTATATATATATATATATATATAT
Found at i:22201412 original size:20 final size:18
Alignment explanation
Indices: 22201389--22201427 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
22201379 GCAAATTCTG
22201389 AGAAATTAATGTCATAAAAT
1 AGAAATTAAT-T-ATAAAAT
*
22201409 AGAATTTAATTATAAAAT
1 AGAAATTAATTATAAAAT
22201427 A
1 A
22201428 ATTAATTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 1 0.06
20 9 0.50
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (18 bp):
AGAAATTAATTATAAAAT
Found at i:22209959 original size:21 final size:21
Alignment explanation
Indices: 22209933--22209974 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22209923 CAACTCCAAG
22209933 CTAAAGAAGAA-GAAGAAGATC
1 CTAAAGAA-AATGAAGAAGATC
*
22209954 CTAAAGAAAATGAGGAAGATC
1 CTAAAGAAAATGAAGAAGATC
22209975 TTTCGGTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.55, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
CTAAAGAAAATGAAGAAGATC
Found at i:22219511 original size:966 final size:977
Alignment explanation
Indices: 22217709--22219581 Score: 2582
Period size: 966 Copynumber: 1.9 Consensus size: 977
22217699 TTAACGTGGA
* * * **
22217709 AAAATACATTTTAATTATAAAATAATTAATTTATGCTAAAA-TTTCAAGCATATTGATTTTTTAA
1 AAAATTCAATTTAATTATAAAATAATTAATTTGTAATAAAATTTTCAA-CATATTGA-TTTTTAA
* * * * *
22217773 TTATTTTTATAAATATAAAACATGAAGTTGGTCATTTTTTTAATAGTTTTGCACAATTGGTGAAA
64 TTATTTTTATAAATATAAAGCATGAATTTGATGATTTTTTTGATAGTTTTGCACAATTGGTGAAA
* * * * *
22217838 ATTGGCTCGGCAAACACTACTAATAGCCTGAACCGTTAAGGG-ATTTTTACACCGAGTCAATGAA
129 ATCGGCCCGGCAGACACTACTAACAGCTTGAACCGTTAAGGGAATTTTTACACCGAGT-AATGAA
* *
22217902 GAGCTAAGAAGTTTAGTTTTCCATCCAAGGTCGCTCCAACATTCTATTCAAGCATATTTCCCATT
193 GAGCTAAGAAGTTTAGTTTTCCAGCCAAGGTCGCTCCAACATTCTGTTCAAGCATATTTCCCATT
* * *
22217967 CACAATCATAGTGTTGTGCTTAAAAGCTGAAGTTCTTAGGTACGTGAAGAAAACAGGATATAGCC
258 CACAATCATAGTGTTGTGCTTAAAAGCTGAAATTCTTGGGAACGTGAAGAAAACAGGATATAGCC
* * * *
22218032 AAGGAACAATCATTGATTGGGCTGTTATTCGAGTAGCAAGAAATT-CAGTTCTTTAACTGCAAGC
323 AAGGAACGATCACTGATTGGGCTCTTATTCGAGTAGCAAGAAATTCCA-TTCTTCAACTGCAAGC
* * * *
22218096 TAAAGAAGAAGAAGAGGATCCTGAGGAAGATACTAAAGAAAATGAGGACGATCTTTCGATGACAA
387 TAAAGAAGAAGAAGAAGATCCTGAGGAAGATACTAAAGAAAATGAGGAAGATCTTTCGGTGACAG
*
22218161 AACTAACTAGAATGCATGATGAAGTAGAGCCTACTGAACAAGTATCCGAGCAAGTATTTCGACAT
452 AACTAACTAGAATGCATGATGAAGTAGAGTCTACTGAACAAGTATCCGAGCAAGTATTTCGACAT
* *
22218226 GGGAACAATCTTATTGGAGATACATGAAGATACGAGATGATGCATTTAAATGTGCATTTAAAAAA
517 GGGAACAATCTTATTGGAGATACATGAAGATACGAGATGATGCATTTAAAAGTGCACTTAAAAAA
* * * * *
22218291 GTATTTCGTGAACTATTTATCTTTGTTCCTGATTTTCCATATTATATATTTGAACCATGGACTCC
582 GTATTTCGTGACCCATTTATCTTTGTTCCTGAATTTCTAGATTATATATTTGAACCATGGACTCC
* *
22218356 AATGGCGAAGAAGGAGCAAGATGACTTGAGTAACAATAGGGACTACGAAGCAAAAGAAGAGTCAG
647 AATGGCGAAGAAGGAGCAAGGTGACTCGAGTAACAATAGGGACTACGAAGCAAAAGAAGAGTCAG
* * * *
22218421 TCTAGGGGGTCTAAAAATAATTAAAAAGGAGGATCTAGTCTTTCTTTAATTTCTGTTATTTTATT
712 TCTAGGGGGTCTGAACATAAATAAAAAGGGGGATCTAGTCTTTCTTTAATTTCTGTTATTTTATT
* * * *
22218486 CTCAATCTTTAATTCTTGAATGAATTTAGGATTAGGTCATTTGGTTGGTTTTTAATTCTTGCATA
777 TTCAGTCTTTAATTCTTGAATGAATTTAGGATTAGGTCATTAGGTTAGTTTTTAATTCTTGCATA
** * * *
22218551 ATAAATTAAGAGACTGGAGACAATAATTGAACAATCTAGAAAAATAAGAGTGTGGCAAAATATAT
842 ATAAATTAAGAGGTTGAAGACAATAATTGAACAACCTAGAAAAATAAGAGTGTGACAAAATATAT
* ** * * *
22218616 AAAC-T-T-T-TT-C-AAA-CCCTT-T-TTAAC-CT-AAAT-TCAAGCAAA-TTCTGAGAAATTA
907 ATACATGTATATTGCTAAAGAGCTTGTATTAACGATAAAATAT-AAGCAAACTTTTTA-AAATTA
22218668 ATGTCAA-
970 ATGTCAAG
** * *
22218675 AAAATTCAATTTAATTATAAAATAATTAATTTGTGCTAAAATTTTGAACATACTGATTTTTAATT
1 AAAATTCAATTTAATTATAAAATAATTAATTTGTAATAAAATTTTCAACATATTGATTTTTAATT
* * * * *
22218740 ATTTTCAGAAATAGAAAGCATGAATTTGATGATTTTTTTGATAGTTTTGTACAATTGGTGAAAGT
66 ATTTTTATAAATATAAAGCATGAATTTGATGATTTTTTTGATAGTTTTGCACAATTGGTGAAAAT
* * *
22218805 CGGCCCGGCAGGCACTAGTAACAGCTTGAACCGTTAAGGGAATTTTTACACCGAGCTAATGAATA
131 CGGCCCGGCAGACACTACTAACAGCTTGAACCGTTAAGGGAATTTTTACACCGAG-TAATGAAGA
* * * *
22218870 GCTAAGAAGTTTAGTTTTCCAGCCAAGGTCGCCCCAACATTCCGTTCAGGCATATTTCGCATTCA
195 GCTAAGAAGTTTAGTTTTCCAGCCAAGGTCGCTCCAACATTCTGTTCAAGCATATTTCCCATTCA
* *
22218935 CAATCATAGTGTTGTGCTTAAAAGCTGAAATTCTTAGGAACGTGAAGAAAATAGGATATAGCCAA
260 CAATCATAGTGTTGTGCTTAAAAGCTGAAATTCTTGGGAACGTGAAGAAAACAGGATATAGCCAA
* * * * * **
22219000 GGAACGAACATTGATTGGGCTCTTATTCGAGTAGCAGGAATTTCAATTCTTCAACTAAAAGCTAA
325 GGAACGATCACTGATTGGGCTCTTATTCGAGTAGCAAGAAATTCCATTCTTCAACTGCAAGCTAA
* *
22219065 AGAAGAAGAAGAAGATCCTGAGGAAGATCCTAAAGTAAATGAGGAAGATCTTTCGGTGACAGAAC
390 AGAAGAAGAAGAAGATCCTGAGGAAGATACTAAAGAAAATGAGGAAGATCTTTCGGTGACAGAAC
* * *
22219130 TAACTAGAATCCATGATGAAGTA-ATGTCTACTGAACAAGTATCCGAGCAAGTATTTCGACGTAG
455 TAACTAGAATGCATGATGAAGTAGA-GTCTACTGAACAAGTATCCGAGCAAGTATTTCGACATGG
* * *
22219194 AAACAATCTTACTGGAGATACATGAAGATACGAGATGATGCATTTAAAAGTCCACTTAAAAAAGT
519 GAACAATCTTATTGGAGATACATGAAGATACGAGATGATGCATTTAAAAGTGCACTTAAAAAAGT
* ** * *
22219259 ATTTTGTTTCCCATTTATCTTTGTTCCAGAATTTCTAGATTATATATTTGAA-CAGTGGAATCCA
584 ATTTCGTGACCCATTTATCTTTGTTCCTGAATTTCTAGATTATATATTTGAACCA-TGGACTCCA
** * * *
22219323 ATGGCGAAGAAGGAGCTTGGCGACTCGAGTAACAATATGGACTACGATGCAAAAGAAGAGTCAGT
648 ATGGCGAAGAAGGAGCAAGGTGACTCGAGTAACAATAGGGACTACGAAGCAAAAGAAGAGTCAGT
*
22219388 CTAAGGGGTCTGAACATAAATAAAAAGGGGGATCTAGTCTTTCTTTAATTTCTGTTATTTTATTT
713 CTAGGGGGTCTGAACATAAATAAAAAGGGGGATCTAGTCTTTCTTTAATTTCTGTTATTTTATTT
* *
22219453 TCAGTCTTTAATTCTTGAATGAATTTAGGATTAGGTCATTTGGTTAGTTTTTAATTCTTGCATTA
778 TCAGTCTTTAATTCTTGAATGAATTTAGGATTAGGTCATTAGGTTAGTTTTTAATTCTTGCATAA
*
22219518 TAAATTAAGAGGTTGAAGACAATAATTGAACAACCTAGAAAAATACGAGTGTG--AAAATATATA
843 TAAATTAAGAGGTTGAAGACAATAATTGAACAACCTAGAAAAATAAGAGTGTGACAAAATATATA
22219581 T
908 T
22219582 GTGCATGAAA
Statistics
Matches: 813, Mismatches: 88, Indels: 14
0.89 0.10 0.02
Matches are distributed among these distances:
964 10 0.01
965 100 0.12
966 696 0.86
967 7 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (977 bp):
AAAATTCAATTTAATTATAAAATAATTAATTTGTAATAAAATTTTCAACATATTGATTTTTAATT
ATTTTTATAAATATAAAGCATGAATTTGATGATTTTTTTGATAGTTTTGCACAATTGGTGAAAAT
CGGCCCGGCAGACACTACTAACAGCTTGAACCGTTAAGGGAATTTTTACACCGAGTAATGAAGAG
CTAAGAAGTTTAGTTTTCCAGCCAAGGTCGCTCCAACATTCTGTTCAAGCATATTTCCCATTCAC
AATCATAGTGTTGTGCTTAAAAGCTGAAATTCTTGGGAACGTGAAGAAAACAGGATATAGCCAAG
GAACGATCACTGATTGGGCTCTTATTCGAGTAGCAAGAAATTCCATTCTTCAACTGCAAGCTAAA
GAAGAAGAAGAAGATCCTGAGGAAGATACTAAAGAAAATGAGGAAGATCTTTCGGTGACAGAACT
AACTAGAATGCATGATGAAGTAGAGTCTACTGAACAAGTATCCGAGCAAGTATTTCGACATGGGA
ACAATCTTATTGGAGATACATGAAGATACGAGATGATGCATTTAAAAGTGCACTTAAAAAAGTAT
TTCGTGACCCATTTATCTTTGTTCCTGAATTTCTAGATTATATATTTGAACCATGGACTCCAATG
GCGAAGAAGGAGCAAGGTGACTCGAGTAACAATAGGGACTACGAAGCAAAAGAAGAGTCAGTCTA
GGGGGTCTGAACATAAATAAAAAGGGGGATCTAGTCTTTCTTTAATTTCTGTTATTTTATTTTCA
GTCTTTAATTCTTGAATGAATTTAGGATTAGGTCATTAGGTTAGTTTTTAATTCTTGCATAATAA
ATTAAGAGGTTGAAGACAATAATTGAACAACCTAGAAAAATAAGAGTGTGACAAAATATATATAC
ATGTATATTGCTAAAGAGCTTGTATTAACGATAAAATATAAGCAAACTTTTTAAAATTAATGTCA
AG
Found at i:22230152 original size:24 final size:24
Alignment explanation
Indices: 22230120--22230167 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
22230110 ACAATCAATT
22230120 CATTTTATATTACAGTTT-CACTGA
1 CATTTTATATTACA-TTTGCACTGA
22230144 CATTTTATATTACATTTGCACTGA
1 CATTTTATATTACATTTGCACTGA
22230168 GAATTTTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.29, C:0.17, G:0.08, T:0.46
Consensus pattern (24 bp):
CATTTTATATTACATTTGCACTGA
Found at i:22240203 original size:37 final size:37
Alignment explanation
Indices: 22240147--22240221 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
22240137 AGAGCTGAGA
* *
22240147 CAGTCCATCTTACGGGAAGCGTATAGTAGCCCTTATG
1 CAGTCCATCATACGCGAAGCGTATAGTAGCCCTTATG
22240184 CAGTCCATCATACGCGAAGCGTATAGTAGCCCTTATG
1 CAGTCCATCATACGCGAAGCGTATAGTAGCCCTTATG
22240221 C
1 C
22240222 TATGCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (37 bp):
CAGTCCATCATACGCGAAGCGTATAGTAGCCCTTATG
Found at i:22242039 original size:21 final size:20
Alignment explanation
Indices: 22242015--22242055 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22242005 CGATTTATCC
22242015 TTTCTCCTCTACCTTTTCTCT
1 TTTCTCCTCT-CCTTTTCTCT
* *
22242036 TTTCTTCTCTTCTTTTCTCT
1 TTTCTCCTCTCCTTTTCTCT
22242056 AACCTTTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTCTCCTCTCCTTTTCTCT
Found at i:22259714 original size:17 final size:16
Alignment explanation
Indices: 22259702--22259749 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
22259692 CACATTTCGT
*
22259702 TTGTCATTGCATTTTTC
1 TTGTCATTGCA-TTTTA
*
22259719 TTGTCACTGCATATTTA
1 TTGTCATTGCAT-TTTA
22259736 TTGTCATTGCATTT
1 TTGTCATTGCATTT
22259750 CCATATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 3 0.11
17 24 0.89
ACGTcount: A:0.17, C:0.17, G:0.12, T:0.54
Consensus pattern (16 bp):
TTGTCATTGCATTTTA
Found at i:22281646 original size:20 final size:20
Alignment explanation
Indices: 22281613--22281653 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
22281603 ATCCTGTAAT
*
22281613 TTTATTTTATTTTCTTTTTG
1 TTTATTTTATTTTCATTTTG
22281633 TTTATGTTTA-TTTCATTTTG
1 TTTAT-TTTATTTTCATTTTG
22281653 T
1 T
22281654 ATTTCTTGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.76
Consensus pattern (20 bp):
TTTATTTTATTTTCATTTTG
Found at i:22290869 original size:11 final size:11
Alignment explanation
Indices: 22290855--22290937 Score: 60
Period size: 11 Copynumber: 7.5 Consensus size: 11
22290845 CACCACTTCT
22290855 CCACCATAGCA
1 CCACCATAGCA
* *
22290866 CCACCGTACCA
1 CCACCATAGCA
*
22290877 CCACCCA-AGTA
1 CCA-CCATAGCA
* *
22290888 TCACCATACCA
1 CCACCATAGCA
*
22290899 CTACCATAGCA
1 CCACCATAGCA
* *
22290910 TCACCATATCA
1 CCACCATAGCA
* *
22290921 CCACCCTTGCA
1 CCACCATAGCA
22290932 CCACCA
1 CCACCA
22290938 CAAAACTATT
Statistics
Matches: 51, Mismatches: 19, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
10 3 0.06
11 46 0.90
12 2 0.04
ACGTcount: A:0.33, C:0.47, G:0.06, T:0.14
Consensus pattern (11 bp):
CCACCATAGCA
Found at i:22290880 original size:22 final size:22
Alignment explanation
Indices: 22290855--22290937 Score: 78
Period size: 22 Copynumber: 3.8 Consensus size: 22
22290845 CACCACTTCT
*
22290855 CCACCATAGCACCACCGTACCA
1 CCACCATAGCACCACCATACCA
* *
22290877 CCACCCA-AGTATCACCATACCA
1 CCA-CCATAGCACCACCATACCA
* * *
22290899 CTACCATAGCATCACCATATCA
1 CCACCATAGCACCACCATACCA
* *
22290921 CCACCCTTGCACCACCA
1 CCACCATAGCACCACCA
22290938 CAAAACTATT
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
21 3 0.06
22 43 0.88
23 3 0.06
ACGTcount: A:0.33, C:0.47, G:0.06, T:0.14
Consensus pattern (22 bp):
CCACCATAGCACCACCATACCA
Found at i:22296790 original size:22 final size:22
Alignment explanation
Indices: 22296765--22296812 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
22296755 GTGGTGTAAG
*
22296765 GGTGGTGATACGGTGGTGCTAT
1 GGTGGTGATACGATGGTGCTAT
* * *
22296787 GGTGGTGGTATGATGGTGTTAT
1 GGTGGTGATACGATGGTGCTAT
22296809 GGTG
1 GGTG
22296813 AAGAAGTGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.12, C:0.04, G:0.48, T:0.35
Consensus pattern (22 bp):
GGTGGTGATACGATGGTGCTAT
Found at i:22296798 original size:11 final size:11
Alignment explanation
Indices: 22296765--22296812 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
22296755 GTGGTGTAAG
*
22296765 GGTGGTGATAC
1 GGTGGTGATAT
*
22296776 GGTGGTGCTAT
1 GGTGGTGATAT
*
22296787 GGTGGTGGTAT
1 GGTGGTGATAT
* *
22296798 GATGGTGTTAT
1 GGTGGTGATAT
22296809 GGTG
1 GGTG
22296813 AAGAAGTGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.12, C:0.04, G:0.48, T:0.35
Consensus pattern (11 bp):
GGTGGTGATAT
Found at i:22320505 original size:24 final size:24
Alignment explanation
Indices: 22320475--22320549 Score: 114
Period size: 24 Copynumber: 3.1 Consensus size: 24
22320465 ATCAATTCAT
* *
22320475 TTTTATATTACAGTTGCACTGACA
1 TTTTATATTACATTTGCACCGACA
* *
22320499 TTTTATATTACATTTGCACCAAAA
1 TTTTATATTACATTTGCACCGACA
22320523 TTTTATATTACATTTGCACCGACA
1 TTTTATATTACATTTGCACCGACA
22320547 TTT
1 TTT
22320550 AATTAGTTTG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (24 bp):
TTTTATATTACATTTGCACCGACA
Found at i:22328215 original size:21 final size:22
Alignment explanation
Indices: 22328189--22328243 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
22328179 GTATAGAGGC
*
22328189 AGAAGAAGAAGAAAG-GAAAGA
1 AGAAGAAGAAGAAAGAGAAACA
*
22328210 AGAAGAAAAAG-AAGAGAAACA
1 AGAAGAAGAAGAAAGAGAAACA
22328231 AGAA-AAGGAAGAA
1 AGAAGAA-GAAGAA
22328244 GAAGATATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 5 0.18
21 22 0.79
22 1 0.04
ACGTcount: A:0.69, C:0.02, G:0.29, T:0.00
Consensus pattern (22 bp):
AGAAGAAGAAGAAAGAGAAACA
Found at i:22332289 original size:18 final size:18
Alignment explanation
Indices: 22332266--22332300 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22332256 TACAGTATTT
*
22332266 ATTCTCTTTTATTTTTAC
1 ATTCTCTATTATTTTTAC
*
22332284 ATTCTCTATTGTTTTTA
1 ATTCTCTATTATTTTTA
22332301 ACAATGGGGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.14, G:0.03, T:0.66
Consensus pattern (18 bp):
ATTCTCTATTATTTTTAC
Found at i:22335047 original size:15 final size:15
Alignment explanation
Indices: 22335023--22335054 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
22335013 TAGTTTTATT
22335023 TTTAACTTAGATTAA
1 TTTAACTTAGATTAA
*
22335038 TTTAATTTAGATTAA
1 TTTAACTTAGATTAA
22335053 TT
1 TT
22335055 CCCTTCACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (15 bp):
TTTAACTTAGATTAA
Found at i:22346811 original size:20 final size:21
Alignment explanation
Indices: 22346778--22346819 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
22346768 GGGTAGGATC
* *
22346778 GTTTTTTCAGAAATCTGCATT
1 GTTTTTACAGAAATATGCATT
22346799 GTTTTTACA-AAATATGCATT
1 GTTTTTACAGAAATATGCATT
22346819 G
1 G
22346820 GCACAATCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (21 bp):
GTTTTTACAGAAATATGCATT
Found at i:22347057 original size:8 final size:8
Alignment explanation
Indices: 22347039--22347071 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
22347029 TGTGTTTCTA
22347039 TGGACCTTT
1 TGGA-CTTT
22347048 TGGACTTT
1 TGGACTTT
22347056 TGGACTTT
1 TGGACTTT
22347064 TGGACTTT
1 TGGACTTT
22347072 ACTTTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 20 0.83
9 4 0.17
ACGTcount: A:0.12, C:0.15, G:0.24, T:0.48
Consensus pattern (8 bp):
TGGACTTT
Found at i:22349752 original size:24 final size:24
Alignment explanation
Indices: 22349724--22349778 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
22349714 GAGTAATAAG
*
22349724 AGTTTTACTCAAACAAATAAACAA
1 AGTTTAACTCAAACAAATAAACAA
* * *
22349748 AGTTTAATTGAAACAAATAAACAG
1 AGTTTAACTCAAACAAATAAACAA
22349772 AGTTTAA
1 AGTTTAA
22349779 TTTAAAGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.53, C:0.11, G:0.09, T:0.27
Consensus pattern (24 bp):
AGTTTAACTCAAACAAATAAACAA
Found at i:22349779 original size:24 final size:24
Alignment explanation
Indices: 22349734--22349780 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
22349724 AGTTTTACTC
22349734 AAACAAATAAACAAAGTTTAATTG
1 AAACAAATAAACAAAGTTTAATTG
*
22349758 AAACAAATAAACAGAGTTTAATT
1 AAACAAATAAACAAAGTTTAATT
22349781 TAAAGATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.57, C:0.09, G:0.09, T:0.26
Consensus pattern (24 bp):
AAACAAATAAACAAAGTTTAATTG
Found at i:22356319 original size:146 final size:146
Alignment explanation
Indices: 22356055--22356348 Score: 552
Period size: 146 Copynumber: 2.0 Consensus size: 146
22356045 ATGATAAATG
22356055 ACAAAGGGTTGGAAATGTCACCAACAAAAATGAAATTCCTCGAACAAACATCATGGAAGTAGAAT
1 ACAAAGGGTTGGAAATGTCACCAACAAAAATGAAATTCCTCGAACAAACATCATGGAAGTAGAAT
* *
22356120 TGTTTGATGTTTGTGGTAATGACTTTCTTGGTTCATTCCCTCCTTCATTCAGTAACAAGTATATT
66 TGTTCGATGTTTGTGGTAATGACTTTCTTGGTTCATTCCCTCCATCATTCAGTAACAAGTATATT
22356185 CTGGTTGTAGTCGACT
131 CTGGTTGTAGTCGACT
*
22356201 ACAAAGGGTTGGAAATGTCGCCAACAAAAATGAAATTCCTCGAACAAACATCATGGAAGTAGAAT
1 ACAAAGGGTTGGAAATGTCACCAACAAAAATGAAATTCCTCGAACAAACATCATGGAAGTAGAAT
*
22356266 TGTTCGATGTTTGTGGTAATGACTTTCTTGGTTCATTCCCTTCATCATTCAGTAACAAGTATATT
66 TGTTCGATGTTTGTGGTAATGACTTTCTTGGTTCATTCCCTCCATCATTCAGTAACAAGTATATT
22356331 CTGGTTGTAGTCGACT
131 CTGGTTGTAGTCGACT
22356347 AC
1 AC
22356349 GTATCAAAAT
Statistics
Matches: 144, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
146 144 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (146 bp):
ACAAAGGGTTGGAAATGTCACCAACAAAAATGAAATTCCTCGAACAAACATCATGGAAGTAGAAT
TGTTCGATGTTTGTGGTAATGACTTTCTTGGTTCATTCCCTCCATCATTCAGTAACAAGTATATT
CTGGTTGTAGTCGACT
Found at i:22358278 original size:26 final size:25
Alignment explanation
Indices: 22358222--22358271 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
22358212 CATCTTCCAT
*
22358222 TTTTTAATTTATTTAATTTATTAAC
1 TTTTTAATTTATTTAAATTATTAAC
* *
22358247 TCTTTAATTTATTTTAAATTGTTAA
1 TTTTTAATTTA-TTTAAATTATTAA
22358272 TATTTTATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (25 bp):
TTTTTAATTTATTTAAATTATTAAC
Found at i:22358426 original size:19 final size:19
Alignment explanation
Indices: 22358402--22358440 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
22358392 AGTGCAAGAG
22358402 CTAAGGAAAGATATGATAA
1 CTAAGGAAAGATATGATAA
22358421 CTAAGGAAAGATATGATAA
1 CTAAGGAAAGATATGATAA
22358440 C
1 C
22358441 ACGTTCATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.08, G:0.21, T:0.21
Consensus pattern (19 bp):
CTAAGGAAAGATATGATAA
Found at i:22362901 original size:91 final size:91
Alignment explanation
Indices: 22362745--22362926 Score: 274
Period size: 91 Copynumber: 2.0 Consensus size: 91
22362735 TGAAGCCCAT
* *
22362745 TGCAGTGACATTACAGTTGGCAGATAGATCATTAGCGCAACTTGAGGGACAAATTAAAGACGTCC
1 TGCAGTGACATTACAGTTGGCAGATAGATCACTAGCGCAACCTGAGGGACAAATTAAAGACGTCC
*
22362810 TCGTTAGCATAGATAAGTTTGTGTTC
66 TCATTAGCATAGATAAGTTTGTGTTC
** * * * *
22362836 TGCAGTGACATTGTAGTTGGTAGATAGATCACTAGCGTAACCTGTGGGACAAATTAAAGATGTCC
1 TGCAGTGACATTACAGTTGGCAGATAGATCACTAGCGCAACCTGAGGGACAAATTAAAGACGTCC
*
22362901 TCATTAGCATAGTTAAGTTTGTGTTC
66 TCATTAGCATAGATAAGTTTGTGTTC
22362927 CCAGCGGACC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
91 81 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (91 bp):
TGCAGTGACATTACAGTTGGCAGATAGATCACTAGCGCAACCTGAGGGACAAATTAAAGACGTCC
TCATTAGCATAGATAAGTTTGTGTTC
Found at i:22364084 original size:24 final size:24
Alignment explanation
Indices: 22364057--22364216 Score: 133
Period size: 24 Copynumber: 6.7 Consensus size: 24
22364047 CAGACAATAT
* * *
22364057 TTAGCCCATACGAGCCTAGAATGG
1 TTAGCCCTTACGAGCCCAGAACGG
* *
22364081 TTAGCTCTTACGAGCCCAGAACAG
1 TTAGCCCTTACGAGCCCAGAACGG
* *
22364105 TTGGCTCC-TACGAGCCCAGAACGA
1 TTAGC-CCTTACGAGCCCAGAACGG
* * *
22364129 TTGGCCCCTATGAGCCCAGAACGG
1 TTAGCCCTTACGAGCCCAGAACGG
* * * *
22364153 TTATCTCTTACGAGCACAGAATGG
1 TTAGCCCTTACGAGCCCAGAACGG
* * *
22364177 TTAGCTCTTACAAGCCCAGAATGG
1 TTAGCCCTTACGAGCCCAGAACGG
* *
22364201 TTAGCTCTTGCGAGCC
1 TTAGCCCTTACGAGCC
22364217 TAAAATCAGA
Statistics
Matches: 111, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
23 2 0.02
24 108 0.97
25 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (24 bp):
TTAGCCCTTACGAGCCCAGAACGG
Found at i:22364193 original size:48 final size:47
Alignment explanation
Indices: 22364065--22364216 Score: 160
Period size: 48 Copynumber: 3.2 Consensus size: 47
22364055 ATTTAGCCCA
* * *
22364065 TACGAGCCTAGAATGGTTAGCTCTTACGAGCCCAGAACAGTTGGCTCC
1 TACGAGCC-AGAATGGTTAGCTCTTACGAGCCCAGAACGGTTAGCTCT
* * * * * * *
22364113 TACGAGCCCAGAACGATTGGCCCCTATGAGCCCAGAACGGTTATCTCT
1 TACGAG-CCAGAATGGTTAGCTCTTACGAGCCCAGAACGGTTAGCTCT
* *
22364161 TACGAGCACAGAATGGTTAGCTCTTACAAGCCCAGAATGGTTAGCTCT
1 TACGAGC-CAGAATGGTTAGCTCTTACGAGCCCAGAACGGTTAGCTCT
*
22364209 TGCGAGCC
1 TACGAGCC
22364217 TAAAATCAGA
Statistics
Matches: 82, Mismatches: 20, Indels: 5
0.77 0.19 0.05
Matches are distributed among these distances:
47 2 0.02
48 78 0.95
49 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (47 bp):
TACGAGCCAGAATGGTTAGCTCTTACGAGCCCAGAACGGTTAGCTCT
Found at i:22364216 original size:72 final size:72
Alignment explanation
Indices: 22364057--22364197 Score: 174
Period size: 72 Copynumber: 2.0 Consensus size: 72
22364047 CAGACAATAT
* * * * * *
22364057 TTAGCCCATACGAGCCTAGAATGGTTAGCTCTTACGAGCCCAGAACAGTTGGCTCCTACGAGCCC
1 TTAGCCCCTACGAGCCCAGAACGGTTAGCTCTTACGAGCACAGAACAGTTAGCTCCTACAAGCCC
22364122 AGAACGA
66 AGAACGA
* * * ** *
22364129 TTGGCCCCTATGAGCCCAGAACGGTTATCTCTTACGAGCACAGAATGGTTAGCTCTTACAAGCCC
1 TTAGCCCCTACGAGCCCAGAACGGTTAGCTCTTACGAGCACAGAACAGTTAGCTCCTACAAGCCC
22364194 AGAA
66 AGAA
22364198 TGGTTAGCTC
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
72 57 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (72 bp):
TTAGCCCCTACGAGCCCAGAACGGTTAGCTCTTACGAGCACAGAACAGTTAGCTCCTACAAGCCC
AGAACGA
Found at i:22364243 original size:28 final size:27
Alignment explanation
Indices: 22364212--22364268 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
22364202 TAGCTCTTGC
22364212 GAGCCTAAAATCAGAATAACACTCTTTT
1 GAGCC-AAAATCAGAATAACACTCTTTT
* *
22364240 GAGCCAGAATCAGAATAACGCTCTTTT
1 GAGCCAAAATCAGAATAACACTCTTTT
22364267 GA
1 GA
22364269 CCCATCAGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (27 bp):
GAGCCAAAATCAGAATAACACTCTTTT
Found at i:22374020 original size:24 final size:24
Alignment explanation
Indices: 22373990--22374099 Score: 157
Period size: 24 Copynumber: 4.6 Consensus size: 24
22373980 ATTTAGCCCA
*
22373990 TACGAGCCCAGAATGGTCAGCTCT
1 TACGAGCCCAGAATGGTTAGCTCT
* * *
22374014 TACGAGCCCAGAACGGTTGGCTCC
1 TACGAGCCCAGAATGGTTAGCTCT
*
22374038 TACGAGCCCAGAATGGTTGGCTCT
1 TACGAGCCCAGAATGGTTAGCTCT
22374062 TACGAGCCCAGAATGGTTAGCTCT
1 TACGAGCCCAGAATGGTTAGCTCT
* *
22374086 TGCGAGCCTAGAAT
1 TACGAGCCCAGAAT
22374100 CAGAATAACA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 77 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (24 bp):
TACGAGCCCAGAATGGTTAGCTCT
Found at i:22374131 original size:27 final size:27
Alignment explanation
Indices: 22374080--22374149 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
22374070 CAGAATGGTT
**
22374080 AGCTCTTGCGAGCCTAGAATCAGAATAA
1 AGCTCTTTTGAGCC-AGAATCAGAATAA
22374108 CA-CTCTTTTGAGCCAGAATCAGAATAA
1 -AGCTCTTTTGAGCCAGAATCAGAATAA
22374135 AGCTCTTTTGAGCCA
1 AGCTCTTTTGAGCCA
22374150 TCAGTCTTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.03
27 26 0.68
28 10 0.26
29 1 0.03
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (27 bp):
AGCTCTTTTGAGCCAGAATCAGAATAA
Found at i:22380245 original size:17 final size:16
Alignment explanation
Indices: 22380225--22380280 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 16
22380215 GCTGTCATCT
22380225 CATTTTGTTTGTCATTG
1 CATTTT-TTTGTCATTG
*
22380242 CATTTTTCTTGTCACTG
1 CATTTTT-TTGTCATTG
*
22380259 CATCTTCATTT-TCATTG
1 CAT-TT-TTTTGTCATTG
22380276 CATTT
1 CATTT
22380281 CCATATATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 3 0.09
17 25 0.76
18 4 0.12
19 1 0.03
ACGTcount: A:0.14, C:0.20, G:0.11, T:0.55
Consensus pattern (16 bp):
CATTTTTTTGTCATTG
Found at i:22386634 original size:15 final size:15
Alignment explanation
Indices: 22386610--22386640 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
22386600 TAGTTTTAGC
*
22386610 TTTAGGTTAGATTAA
1 TTTAGCTTAGATTAA
22386625 TTTAGCTTAGATTAA
1 TTTAGCTTAGATTAA
22386640 T
1 T
22386641 ACTTTAGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.03, G:0.16, T:0.48
Consensus pattern (15 bp):
TTTAGCTTAGATTAA
Found at i:22418244 original size:15 final size:16
Alignment explanation
Indices: 22418219--22418258 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
22418209 AAAAAAATAA
*
22418219 TTTTCTTTTTACAAAT
1 TTTTCTTTTAACAAAT
**
22418235 TTTTCTTTTAACATTT
1 TTTTCTTTTAACAAAT
22418251 TTTTCTTT
1 TTTTCTTT
22418259 CTTTTTCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTCTTTTAACAAAT
Found at i:22427825 original size:24 final size:24
Alignment explanation
Indices: 22427797--22427852 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
22427787 GGAGAGTTCT
*
22427797 CAAGAGGAAAAAGAAAATGAAAAA
1 CAAGAAGAAAAAGAAAATGAAAAA
* *
22427821 TAAGAAGAAAATGAAAATGAAAAA
1 CAAGAAGAAAAAGAAAATGAAAAA
22427845 CAAGAAGA
1 CAAGAAGA
22427853 TACCCATACA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (24 bp):
CAAGAAGAAAAAGAAAATGAAAAA
Found at i:22432378 original size:17 final size:18
Alignment explanation
Indices: 22432358--22432396 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
22432348 CTACTTCTTG
*
22432358 TTTAGATTAGTT-AGAGT
1 TTTAGATTAATTAAGAGT
*
22432375 TTTAGTTTAATTAAGAGT
1 TTTAGATTAATTAAGAGT
22432393 TTTA
1 TTTA
22432397 TTTAGATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (18 bp):
TTTAGATTAATTAAGAGT
Found at i:22433482 original size:15 final size:15
Alignment explanation
Indices: 22433462--22433498 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
22433452 CTTTACTCTG
22433462 AACCAATGTAGTTTT
1 AACCAATGTAGTTTT
22433477 AACCAATGTAGTTTT
1 AACCAATGTAGTTTT
22433492 AACCAAT
1 AACCAAT
22433499 TTGCGTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (15 bp):
AACCAATGTAGTTTT
Found at i:22439377 original size:24 final size:24
Alignment explanation
Indices: 22439343--22439389 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
22439333 TAACTCAATT
22439343 CATTTTATATTACAGTTGCACTGG
1 CATTTTATATTACAGTTGCACTGG
* *
22439367 CATTTTGTATTACATTTGCACTG
1 CATTTTATATTACAGTTGCACTG
22439390 ACAATCTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.45
Consensus pattern (24 bp):
CATTTTATATTACAGTTGCACTGG
Found at i:22439763 original size:21 final size:22
Alignment explanation
Indices: 22439728--22439769 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
22439718 AGAAAAATGA
22439728 ACTAAAAAGTAAGGAAACAAAG
1 ACTAAAAAGTAAGGAAACAAAG
*
22439750 ACTAAATA-TAAGGAAACAAA
1 ACTAAAAAGTAAGGAAACAAA
22439770 AATAAAAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.64, C:0.10, G:0.14, T:0.12
Consensus pattern (22 bp):
ACTAAAAAGTAAGGAAACAAAG
Found at i:22444929 original size:5 final size:5
Alignment explanation
Indices: 22444919--22444957 Score: 62
Period size: 5 Copynumber: 7.8 Consensus size: 5
22444909 ATTTTTTCCT
22444919 TTTTC TTTTC TTTTC TTTTC TTTTC TTCTTC TTTT- TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TT-TTC TTTTC TTTT
22444958 AACAAGTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.12
5 24 0.73
6 5 0.15
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:22446038 original size:21 final size:21
Alignment explanation
Indices: 22446012--22446061 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
22446002 ACAGTATGTT
*
22446012 CTTCCTT-TCTTCCTTCTTTTC
1 CTTCCTTCTC-TCATTCTTTTC
*
22446033 CTTCCTTCTCTCATTCTTTTT
1 CTTCCTTCTCTCATTCTTTTC
22446054 CTT-CTTCT
1 CTTCCTTCT
22446062 TTCTCCTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 5 0.19
21 19 0.73
22 2 0.08
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (21 bp):
CTTCCTTCTCTCATTCTTTTC
Found at i:22453208 original size:51 final size:51
Alignment explanation
Indices: 22453132--22453290 Score: 264
Period size: 51 Copynumber: 3.1 Consensus size: 51
22453122 GAAAAGGGTT
*
22453132 CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAATGGTC
1 CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTC
*
22453183 CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACAGATTAAAGGTC
1 CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTC
* * * *
22453234 CGATGACTAAGTGTCATCATGAGTAAATGAATCCATGACGAATTAAAGGTC
1 CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTC
22453285 CGATGA
1 CGATGA
22453291 TAATAAGTTA
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 101 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (51 bp):
CGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAGGTC
Found at i:22475524 original size:19 final size:21
Alignment explanation
Indices: 22475500--22475543 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
22475490 AATAGTTAAA
22475500 AAAAATTAAAAC-TT-TATTT
1 AAAAATTAAAACTTTCTATTT
*
22475519 AAAAATTTAAACTTTCTATTT
1 AAAAATTAAAACTTTCTATTT
22475540 AAAA
1 AAAA
22475544 TCACTAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.50
20 2 0.09
21 9 0.41
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAAATTAAAACTTTCTATTT
Found at i:22475528 original size:20 final size:21
Alignment explanation
Indices: 22475499--22475543 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
22475489 AAATAGTTAA
22475499 AAAAAATTAAAAC-TT-TATTT
1 AAAAAATT-AAACTTTCTATTT
*
22475519 AAAAATTTAAACTTTCTATTT
1 AAAAAATTAAACTTTCTATTT
22475540 AAAA
1 AAAA
22475544 TCACTAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 4 0.18
20 9 0.41
21 9 0.41
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAAATTAAACTTTCTATTT
Found at i:22475602 original size:143 final size:141
Alignment explanation
Indices: 22475449--22475942 Score: 524
Period size: 139 Copynumber: 3.5 Consensus size: 141
22475439 TGATTAAAAT
* *
22475449 AAAATCACTACTTTACTTCAAAATCAAAACTTTTATTTCGAAATAGTTAAAAAAAATTAAAACTT
1 AAAATCACTACTTTACTTAAAAATCAAAACTTTTATTTCGAAATAGTT-AAAAAAATCAAAACTT
* *
22475514 TATTTAAAAATTTAAACTTTCTATTTAAAATCACTAAAAAACAAATTTTTATTTTTTAAAAAATC
65 TATTTAAAAATTTAAACTTT-T-TTTAAAATAACTAAAAAACAGATTTTTATTTTTTAAAAAATC
*
22475579 AA-TTTTTTTAATG
128 AATTTTTTTTAATA
* * *
22475592 AAAATCACTACTTTACTTAAAAATTC-AAACTTTTATTTCAAAATAGGTAAAAAAATTAAAACTT
1 AAAATCACTACTTTACTTAAAAA-TCAAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAACTT
* * **
22475656 TATTTAAAAATTTAAACTTTTCTTAAAAAAACT-AAAAACAGA-TTTT-TTTTAAAAAAAATCTA
65 TATTTAAAAATTTAAACTTTTTTTAAAATAACTAAAAAACAGATTTTTATTTTTTAAAAAATC--
22475718 AACTTTCTCTTTT--TA
128 AA-TTT-T-TTTTAATA
* * * * * *
22475733 AAAA--ATTATTTTATTTAAAAATCTAAATTTTTATTTCGAAATAGTTAAAAAAATCAAAATTTT
1 AAAATCACTACTTTACTTAAAAATCAAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAACTTT
* * *
22475796 GTTTAAAAATTTAAACTTTTCTTTAAAATAACTAAAAAACAGATTTTTA-TTTTTAAAAATTTAA
66 ATTTAAAAATTTAAACTTTT-TTTAAAATAACTAAAAAACAGATTTTTATTTTTTAAAAA-ATCA
22475860 ATTTTCTCTTTTTTAA-A
129 A---T-T-TTTTTTAATA
* * * * *
22475877 AAAATCACTATTTTTCTTAAAAATCAAAATTTTTATTTCGAAATTGTTTAAAAAAACCAAAACTT
1 AAAATCACTACTTTACTTAAAAATCAAAACTTTTATTTCGAAATAG-TTAAAAAAATCAAAACTT
22475942 T
65 T
22475943 TCCCAAAATC
Statistics
Matches: 296, Mismatches: 33, Indels: 40
0.80 0.09 0.11
Matches are distributed among these distances:
137 12 0.04
138 6 0.02
139 77 0.26
140 19 0.06
141 19 0.06
142 49 0.17
143 52 0.18
144 9 0.03
145 1 0.00
146 35 0.12
147 17 0.06
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.41
Consensus pattern (141 bp):
AAAATCACTACTTTACTTAAAAATCAAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAACTTT
ATTTAAAAATTTAAACTTTTTTTAAAATAACTAAAAAACAGATTTTTATTTTTTAAAAAATCAAT
TTTTTTTAATA
Found at i:22475666 original size:19 final size:19
Alignment explanation
Indices: 22475642--22475684 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
22475632 AAATAGGTAA
22475642 AAAAATTAAAACTTTAT-TT
1 AAAAATTAAAACTTT-TCTT
*
22475661 AAAAATTTAAACTTTTCTT
1 AAAAATTAAAACTTTTCTT
22475680 AAAAA
1 AAAAA
22475685 AACTAAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 1 0.05
19 21 0.95
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAAATTAAAACTTTTCTT
Found at i:22476293 original size:3 final size:3
Alignment explanation
Indices: 22476285--22476330 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
22476275 CATGAAACCC
* * *
22476285 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TGA TAA CAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
22476331 TTAGGCTCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:22476797 original size:42 final size:41
Alignment explanation
Indices: 22476733--22476977 Score: 251
Period size: 42 Copynumber: 5.9 Consensus size: 41
22476723 GAAGAAATGC
* *
22476733 AAATAGACCT-CACATCTGGGCCTCTAAATGCGATGAAAAGT
1 AAATGGACCTCCACA-CTTGGCCTCTAAATGCGATGAAAAGT
* *
22476774 AAATGGACCTCTACACATTGGCCTCTAAATGGGATGAAAAGT
1 AAATGGACCTCCACAC-TTGGCCTCTAAATGCGATGAAAAGT
* * *
22476816 AAAGGGACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGT
1 AAATGGACCTCCACACTT-GGCCTCTAAATGCGATGAAAAGT
* * * ** *
22476858 GAATGGGCTTCCATTC-CCGGGCCTCTAAATGCAATGAAAAGT
1 AAATGGACCTCCA--CACTTGGCCTCTAAATGCGATGAAAAGT
* * * *
22476900 AAATGGACCTCCACACCTGGGTCTTTAAATGAGATGAAAAGT
1 AAATGGACCTCCACA-CTTGGCCTCTAAATGCGATGAAAAGT
*
22476942 AAATGGACCTCCACACTTGGGCCTCAAAATGCGATG
1 AAATGGACCTCCACACTT-GGCCTCTAAATGCGATG
22476978 GACCTGCACA
Statistics
Matches: 167, Mismatches: 29, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
40 1 0.01
41 14 0.08
42 150 0.90
43 1 0.01
44 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (41 bp):
AAATGGACCTCCACACTTGGCCTCTAAATGCGATGAAAAGT
Found at i:22476863 original size:84 final size:83
Alignment explanation
Indices: 22476738--22476977 Score: 279
Period size: 84 Copynumber: 2.9 Consensus size: 83
22476728 AATGCAAATA
* * * *
22476738 GACCT-CACATCTGGGCCTCTAAATGCGATGAAAAGTAAATGGACCTCTACACATTGGCCTCTAA
1 GACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTAAATGGACCTCCACAC-TTGGCCTCTAA
*
22476802 ATGGGATGAAAAGTAAAGG
65 ATGCGATGAAAAGTAAAGG
* * * * **
22476821 GACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGTGAATGGGCTTCCATTC-CCGGGCCTCTA
1 GACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTAAATGGACCTCCA--CACTTGGCCTCTA
* *
22476885 AATGCAATGAAAAGTAAATG
64 AATGCGATGAAAAGTAAAGG
* *
22476905 GACCTCCACACCTGGGTCTTTAAATG-AGATGAAAAGTAAATGGACCTCCACACTTGGGCCTCAA
1 GACCTCCACACCTGGGTCTCTAAATGCA-ATGAAAAGTAAATGGACCTCCACACTT-GGCCTCTA
22476969 AATGCGATG
64 AATGCGATG
22476978 GACCTGCACA
Statistics
Matches: 129, Mismatches: 22, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
82 1 0.01
83 7 0.05
84 119 0.92
85 1 0.01
86 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (83 bp):
GACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACTTGGCCTCTAAA
TGCGATGAAAAGTAAAGG
Found at i:22476982 original size:31 final size:31
Alignment explanation
Indices: 22476944--22477008 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
22476934 TGAAAAGTAA
* *
22476944 ATGGACCTCCACACTTGGGCCTCAAAATGCG
1 ATGGACCTCCACACATAGGCCTCAAAATGCG
* *
22476975 ATGGACCTGCACACATAGGCCTCTAAATGCG
1 ATGGACCTCCACACATAGGCCTCAAAATGCG
22477006 ATG
1 ATG
22477009 AAAAGTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (31 bp):
ATGGACCTCCACACATAGGCCTCAAAATGCG
Found at i:22477021 original size:73 final size:73
Alignment explanation
Indices: 22476902--22477046 Score: 218
Period size: 73 Copynumber: 2.0 Consensus size: 73
22476892 TGAAAAGTAA
* * * * *
22476902 ATGGACCTCCACACCTGGGTCTTTAAATGAGATGAAAAGTAAATGGACCTCCACACTTGGGCCTC
1 ATGGACCTCCACACATAGGCCTCTAAATGAGATGAAAAGTAAATGGACCTCCACAATTGGGCCTC
22476967 AAAATGCG
66 AAAATGCG
* *
22476975 ATGGACCTGCACACATAGGCCTCTAAATGCGATGAAAAGTAAATGGACCTCCACAATTGGGCCTC
1 ATGGACCTCCACACATAGGCCTCTAAATGAGATGAAAAGTAAATGGACCTCCACAATTGGGCCTC
*
22477040 TAAATGC
66 AAAATGC
22477047 AATGAAAAGT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 64 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (73 bp):
ATGGACCTCCACACATAGGCCTCTAAATGAGATGAAAAGTAAATGGACCTCCACAATTGGGCCTC
AAAATGCG
Found at i:22477038 original size:42 final size:42
Alignment explanation
Indices: 22476975--22477091 Score: 164
Period size: 42 Copynumber: 2.8 Consensus size: 42
22476965 TCAAAATGCG
* *
22476975 ATGGACCTGCACACATAGGCCTCTAAATGCGATGAAAAGTAA
1 ATGGACCTCCACACATAGGCCTCTAAATGCAATGAAAAGTAA
*
22477017 ATGGACCTCCACA-ATTGGGCCTCTAAATGCAATGAAAAGTAA
1 ATGGACCTCCACACA-TAGGCCTCTAAATGCAATGAAAAGTAA
* **
22477059 ATGGACCTCCACACCTAAACCTCTAAATGCAAT
1 ATGGACCTCCACACATAGGCCTCTAAATGCAAT
22477092 AAATGCTTTC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 1 0.02
42 65 0.98
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.21
Consensus pattern (42 bp):
ATGGACCTCCACACATAGGCCTCTAAATGCAATGAAAAGTAA
Found at i:22477087 original size:115 final size:115
Alignment explanation
Indices: 22476877--22477088 Score: 318
Period size: 115 Copynumber: 1.8 Consensus size: 115
22476867 TCCATTCCCG
* * *
22476877 GGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTTTAAATGAGATGAAAAGT
1 GGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACAACTGGGCCTCTAAATGAGATGAAAAGT
* ***
22476942 AAATGGACCTCCACACTTGGGCCTCAAAATGCGATGGACCTGCACACATA
66 AAATGGACCTCCACACCTAAACCTCAAAATGCGATGGACCTGCACACATA
* *
22476992 GGCCTCTAAATGCGATGAAAAGTAAATGGACCTCCACAATTGGGCCTCTAAATGCA-ATGAAAAG
1 GGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACAACTGGGCCTCTAAATG-AGATGAAAAG
*
22477056 TAAATGGACCTCCACACCTAAACCTCTAAATGC
65 TAAATGGACCTCCACACCTAAACCTCAAAATGC
22477089 AATAAATGCT
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
115 85 0.99
116 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (115 bp):
GGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACAACTGGGCCTCTAAATGAGATGAAAAGT
AAATGGACCTCCACACCTAAACCTCAAAATGCGATGGACCTGCACACATA
Found at i:22478828 original size:4 final size:4
Alignment explanation
Indices: 22478814--22478848 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
22478804 ATAAATGAGC
* *
22478814 GAAT GAGT GAAT GAAT GAAT GAAT AAAT GAAT GAA
1 GAAT GAAT GAAT GAAT GAAT GAAT GAAT GAAT GAA
22478849 ATTGGGAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (4 bp):
GAAT
Found at i:22481103 original size:22 final size:23
Alignment explanation
Indices: 22481073--22481115 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
22481063 ATAAGTCAAA
22481073 TAAAGCATAAAA-AATGCGAAAT
1 TAAAGCATAAAACAATGCGAAAT
* *
22481095 TAAATCATAAAACATTGCGAA
1 TAAAGCATAAAACAATGCGAA
22481116 CAAATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.21
Consensus pattern (23 bp):
TAAAGCATAAAACAATGCGAAAT
Found at i:22507699 original size:4 final size:4
Alignment explanation
Indices: 22507676--22507729 Score: 72
Period size: 4 Copynumber: 13.5 Consensus size: 4
22507666 AATTTTTCTA
* * * *
22507676 AATG AACG AATG AGTG AATG AATG GATG AATG AAAG AATG AATG AATG
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
22507724 AATG AA
1 AATG AA
22507730 ATCGGGGCAC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.50, C:0.02, G:0.28, T:0.20
Consensus pattern (4 bp):
AATG
Found at i:22534616 original size:18 final size:18
Alignment explanation
Indices: 22534593--22534630 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
22534583 TGGTTTTCTC
22534593 AAAATGGAAA-TAAAAATG
1 AAAAT-GAAATTAAAAATG
*
22534611 AAAATGAAATTACAAATG
1 AAAATGAAATTAAAAATG
22534629 AA
1 AA
22534631 CAAGGATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.66, C:0.03, G:0.13, T:0.18
Consensus pattern (18 bp):
AAAATGAAATTAAAAATG
Found at i:22535389 original size:29 final size:29
Alignment explanation
Indices: 22535348--22535405 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
22535338 TTATTTCCAA
22535348 TCTTCTTTGAGGACTTATCTATGTGTATT
1 TCTTCTTTGAGGACTTATCTATGTGTATT
22535377 TCTTCTTTGAGGACTTATCTATGTGTATT
1 TCTTCTTTGAGGACTTATCTATGTGTATT
22535406 GTGGTGGATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.14, G:0.17, T:0.52
Consensus pattern (29 bp):
TCTTCTTTGAGGACTTATCTATGTGTATT
Found at i:22540916 original size:23 final size:25
Alignment explanation
Indices: 22540890--22540935 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22540880 CCAATTAGGG
22540890 AATTAT-TGTTTAG-ATTTAATTCT
1 AATTATCTGTTTAGAATTTAATTCT
*
22540913 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
22540936 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCT
Found at i:22544924 original size:18 final size:17
Alignment explanation
Indices: 22544894--22544935 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
22544884 AATTAGTATA
22544894 TTTATTTTCATTTTCATT
1 TTTATTTTCATTTT-ATT
22544912 TTTAGTTTT-ATTTTA-T
1 TTTA-TTTTCATTTTATT
22544928 TTTATTTT
1 TTTATTTT
22544936 TTTTAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.17
16 5 0.22
17 1 0.04
18 9 0.39
19 4 0.17
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (17 bp):
TTTATTTTCATTTTATT
Found at i:22544927 original size:5 final size:5
Alignment explanation
Indices: 22544894--22544940 Score: 51
Period size: 5 Copynumber: 8.8 Consensus size: 5
22544884 AATTAGTATA
22544894 TTTAT TTTCAT TTTCATT TTTAGT TTTAT TTTAT TTTAT TTT-T TTTA
1 TTTAT TTT-AT TTT-A-T TTTA-T TTTAT TTTAT TTTAT TTTAT TTTA
22544941 ATTATGCAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
4 4 0.11
5 17 0.45
6 13 0.34
7 4 0.11
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:22545875 original size:9 final size:9
Alignment explanation
Indices: 22545861--22545910 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
22545851 TATTATTTAG
22545861 AAAAAGAAA
1 AAAAAGAAA
*
22545870 AAAAAGTCAA
1 AAAAAG-AAA
22545880 AAAAAGAAA
1 AAAAAGAAA
**
22545889 AAATTG-AA
1 AAAAAGAAA
22545897 AAAAAGAAA
1 AAAAAGAAA
22545906 AAAAA
1 AAAAA
22545911 TTGAGGAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
8 6 0.18
9 19 0.58
10 8 0.24
ACGTcount: A:0.82, C:0.02, G:0.10, T:0.06
Consensus pattern (9 bp):
AAAAAGAAA
Found at i:22545889 original size:17 final size:17
Alignment explanation
Indices: 22545869--22545908 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
22545859 AGAAAAAGAA
22545869 AAAAAAGTCAAAAAAAG
1 AAAAAAGTCAAAAAAAG
* *
22545886 AAAAAATTGAAAAAAAG
1 AAAAAAGTCAAAAAAAG
22545903 AAAAAA
1 AAAAAA
22545909 AATTGAGGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.80, C:0.03, G:0.10, T:0.07
Consensus pattern (17 bp):
AAAAAAGTCAAAAAAAG
Found at i:22545911 original size:19 final size:19
Alignment explanation
Indices: 22545861--22545925 Score: 80
Period size: 19 Copynumber: 3.4 Consensus size: 19
22545851 TATTATTTAG
* *
22545861 AAAAAGAAAAAAAAGTCAA
1 AAAAAGAAAAAAAATTGAA
22545880 AAAAAG--AAAAAATTGAA
1 AAAAAGAAAAAAAATTGAA
22545897 AAAAAGAAAAAAAATTGAGGA
1 AAAAAGAAAAAAAATTGA--A
22545918 AAAAAGAA
1 AAAAAGAA
22545926 GAAGAAGAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
17 15 0.38
19 16 0.40
21 9 0.22
ACGTcount: A:0.77, C:0.02, G:0.14, T:0.08
Consensus pattern (19 bp):
AAAAAGAAAAAAAATTGAA
Found at i:22546988 original size:16 final size:16
Alignment explanation
Indices: 22546967--22547038 Score: 108
Period size: 16 Copynumber: 4.5 Consensus size: 16
22546957 CGTTTGGTTC
22546967 GCTGTAATGGAATAAA
1 GCTGTAATGGAATAAA
22546983 GCTGTAATGGAATAAA
1 GCTGTAATGGAATAAA
*
22546999 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAAA
* **
22547015 GCTGTAATGAAATAGG
1 GCTGTAATGGAATAAA
22547031 GCTGTAAT
1 GCTGTAAT
22547039 CAGTAATTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 53 1.00
ACGTcount: A:0.39, C:0.07, G:0.28, T:0.26
Consensus pattern (16 bp):
GCTGTAATGGAATAAA
Found at i:22547272 original size:58 final size:58
Alignment explanation
Indices: 22547194--22547360 Score: 221
Period size: 58 Copynumber: 2.9 Consensus size: 58
22547184 GATTATTGTT
* *
22547194 ATTAAATTTTAATAAGATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
1 ATTATATTTTAATATGATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
* *
22547252 ATTATATTTTAACATGATTATTATTAAATATAATTTAAT-AAAATAATATATAATTTA
1 ATTATATTTTAATATGATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
* * * *
22547309 ATAATATTTTTAATATAATTATTATTAAAATATGAA-TTAGTAAAAATCATAA
1 ATTATA-TTTTAATATGATTATTATT-AAATAT-AATTTAATAAAAATAATAA
22547361 TATATAATAT
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
57 22 0.23
58 53 0.56
59 10 0.11
60 10 0.11
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.44
Consensus pattern (58 bp):
ATTATATTTTAATATGATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
Found at i:22553245 original size:25 final size:23
Alignment explanation
Indices: 22553204--22553249 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
22553194 GAAATTAGGG
22553204 AATTATTCTTTAGATTTAATTCT
1 AATTATTCTTTAGATTTAATTCT
*
22553227 AATTATCTTTTTAGAATTTAATT
1 AATTAT-TCTTTAG-ATTTAATT
22553250 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.57
Consensus pattern (23 bp):
AATTATTCTTTAGATTTAATTCT
Found at i:22555299 original size:15 final size:15
Alignment explanation
Indices: 22555275--22555304 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22555265 AACCCACATT
22555275 CATTTAAACCAAACC
1 CATTTAAACCAAACC
*
22555290 CATTTGAACCAAACC
1 CATTTAAACCAAACC
22555305 AAATGAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.33, G:0.03, T:0.20
Consensus pattern (15 bp):
CATTTAAACCAAACC
Found at i:22555363 original size:21 final size:21
Alignment explanation
Indices: 22555337--22555386 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
22555327 ACCAAGTCAA
22555337 ACCATTGACCGACGTTGACCG
1 ACCATTGACCGACGTTGACCG
* **
22555358 ACCATTGACCGATGTTGATTG
1 ACCATTGACCGACGTTGACCG
22555379 ACCATTGA
1 ACCATTGA
22555387 TCGTTGGCCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (21 bp):
ACCATTGACCGACGTTGACCG
Found at i:22555367 original size:11 final size:11
Alignment explanation
Indices: 22555337--22555369 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
22555327 ACCAAGTCAA
22555337 ACCATTGACCG
1 ACCATTGACCG
*
22555348 A-CGTTGACCG
1 ACCATTGACCG
22555358 ACCATTGACCG
1 ACCATTGACCG
22555369 A
1 A
22555370 TGTTGATTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.27, C:0.33, G:0.21, T:0.18
Consensus pattern (11 bp):
ACCATTGACCG
Found at i:22557558 original size:53 final size:53
Alignment explanation
Indices: 22557478--22557585 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
22557468 ATAAGAGTAG
22557478 ATTTCCTAACCTCAAACGTAGATCCCCAAACAAAACTACATACCAACTTCTCA
1 ATTTCCTAACCTCAAACGTAGATCCCCAAACAAAACTACATACCAACTTCTCA
22557531 ATTTCCTAACCTCAAACGTAGATCCCCAAACAAAACTACATACCAACTTCTCA
1 ATTTCCTAACCTCAAACGTAGATCCCCAAACAAAACTACATACCAACTTCTCA
22557584 AT
1 AT
22557586 AATATTTTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.40, C:0.33, G:0.04, T:0.23
Consensus pattern (53 bp):
ATTTCCTAACCTCAAACGTAGATCCCCAAACAAAACTACATACCAACTTCTCA
Found at i:22566764 original size:23 final size:21
Alignment explanation
Indices: 22566733--22566785 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 21
22566723 TATGATTTTG
*
22566733 TCATTATTCACATGTTTCCTTAC
1 TCATGATTCACATGTTT-C-TAC
***
22566756 TCATGATTCTTTTGTTTCTAC
1 TCATGATTCACATGTTTCTAC
22566777 TCATGATTC
1 TCATGATTC
22566786 TTTTGATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 12 0.46
22 1 0.04
23 13 0.50
ACGTcount: A:0.19, C:0.23, G:0.08, T:0.51
Consensus pattern (21 bp):
TCATGATTCACATGTTTCTAC
Found at i:22571105 original size:30 final size:30
Alignment explanation
Indices: 22571065--22571131 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
22571055 GGGATGATGT
* *
22571065 GAGCAGAAGTAACGCGAACACTAATAATGC
1 GAGCACAAGTAACGCGAACACTAATAATAC
**
22571095 GAGCACAAGTAGTGCGAACACTAATAATAC
1 GAGCACAAGTAACGCGAACACTAATAATAC
22571125 GAGCACA
1 GAGCACA
22571132 GGCCTTGCGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.43, C:0.21, G:0.22, T:0.13
Consensus pattern (30 bp):
GAGCACAAGTAACGCGAACACTAATAATAC
Found at i:22572934 original size:217 final size:213
Alignment explanation
Indices: 22572497--22575815 Score: 2149
Period size: 214 Copynumber: 15.7 Consensus size: 213
22572487 CATTACTTTG
** * * * *
22572497 ATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTACATTCTCAAGA
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGA
* * * * *
22572562 AATCGCATCATTTAGTCTAAATAGACTT-TCATCTAGTAAACAAGTTTTGGTCTTTGAATAAAAA
66 AATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT-TAAA
* * * * **
22572626 ACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCCAACTTTTA
129 ACTTATTTACGTGAGAATTATTTCTCTTGGTTCTTGGACGAACTATCCAACATGTAAAACTTTTA
*
22572691 CGAGTTCTTTTATAACTTCA
194 CGAGTTCTTTCATAACTTCA
* * * * *
22572711 ATTCCTTACAGTATTCAAGACAACCCATTCATTCGAGCAATTCTCTAAACATTCCAAGCTCGAGA
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGA
* * * *
22572776 AATCGTATCATTTGGTCTAAGTAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGAATTAAAC
66 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAA-
*
22572841 ACTTATTTACGTGAAAATTATTTCTTTCTTGGTTCTTGGACGAAC-ATCCAACCATGTAAAACTT
129 ACTTATTTACGTGAGAATTATTTC--TCTTGGTTCTTGGACGAACTATCCAA-CATGTAAAACTT
* *
22572905 TTTCGAGTTCTTTCATAACTTCT
191 TTACGAGTTCTTTCATAACTTCA
* * * * *
22572928 ATTCCTTAAAGTATTTAAGGCAATCCATGCCTTCGAGCAATTTTCCAAACATTCCATGCTTGAGA
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGA
* * * *
22572993 AATCACATCATTTGGACTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGTTCTTTGAATTACAAA
66 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAA
* * *** * ***
22573058 CTTATTTATGTGAGAATTA---CAAC----TT-TT--ACGAAC--T-C-TTTTATAATTTTTGTT
130 CTTATTTACGTGAGAATTATTTC-TCTTGGTTCTTGGACGAACTATCCAACATGTAAAACTT-TT
* * ** * * *
22573109 CCTCA-AACTATTTATGACTATCC
193 AC-GAGTTCT-TTCATAACT-TCA
* * * * * * ** * *** *
22573132 ATTCCTTTGATCAATTTTTCGA-ACAATCCATT--ATCG-GGAA--GTCGCATCATTTTGTG-TA
1 ATTCC-TT-A--AAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTC
* * * * * * ** * * * *
22573190 AATACATTG--TCATTT--TGTAAACAAGTTT-TGGTTTTAAATAAAAAACTTTT--T-TATG--
62 GAGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTT--GTAAACAAGTTTTGGTCTTTGAA
* * * * ** * * * * *
22573245 TGAGAA-TTGTTT-C-T----CTT-GGT-TCTTGGATGAACTT---CTGAACTTGTCAAACTTTT
124 TTAAAACTTATTTACGTGAGAATTATTTCTCTTGG-T--TCTTGGAC-GAAC-TATCCAACATGT
* * ** * *
22573298 ACAAGTTCCTTTATAACTTCGGTTC----CTT-A
184 A-AA--ACTTTTACGAGTTC-TTTCATAACTTCA
* * * * * * * * * *
22573327 AGT-ATTCAA-TA-T---G---ATCCATTCCATCGAGGAATTTTTTGAACATTACATTCTCGGGA
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGA
* * * * * *
22573383 AATCGCATCATTTGGTCTAAATAGATTGTCATTCTATAAACAAGATTAGGTCTTTGAATAAAAAA
66 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT-TAAAA
* * * * * ** *
22573448 CTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGACAAACT-TCAGAACTTGTCCAACTTTTT
130 CTTATTTACGTGAGAATTATTTCTCTTGGTTCTTGGACGAACTATC-CAACATGTAAAACTTTTA
* * **
22573512 TGAGTTCTTTTATAACTTTG
194 CGAGTTCTTTCATAACTTCA
* ** * * * * *
22573532 ATTCCTTAAAGCATTCAATTCGATCCTTTCATTCGAGCAATTGTCTAAACACTCCATGCTCGAGA
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGA
* * ** * * *
22573597 AATCGTATCATTTGGTCTACATAGTTCATCATTTTGTAGAA-AACTTTTGATCATTGAATTAAAC
66 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAAGTTTTGGTCTTTGAATTAAA-
* *
22573661 ACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTAAAAC-T
129 ACTTATTTACGTGAGAATTA-TT-TCTCTTGGTTCTTGGACGAACTATCC-AACATGTAAAACTT
* *
22573724 TTACGAGTTCTTTTATAACTTCG
191 TTACGAGTTCTTTCATAACTTCA
** * * * * *
22573747 ATTCCTTAAAGTATTCAAGATGATCCATTCCTTCAAACAATTTTTTGAACATTCCATTCTCGA-A
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGA
* * *
22573811 TAATCGCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATAAAAA
66 -AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT-TAAA
* * * *** * * * * *
22573876 ACTTGTTTACCTGAGAATTGTTTCTCTTTCCTATTGGACGAACTTTCGAACTTGTCAAACTTTTA
129 ACTTATTTACGTGAGAATTATTTCTCTTGGTTCTTGGACGAACTATCCAACATGTAAAACTTTTA
* *
22573941 CGAGTTCTTTTATAACTTCG
194 CGAGTTCTTTCATAACTTCA
* * * * * *
22573961 GTTCCTTAAAGTATTCAAGACAATTCATTCCTTCGAGTAATTTTTTGAACATTCCATGCTCGGGA
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGA
* * * * * * *
22574026 AATGGCATCATTTTGTCTAAATAGTTTGTCATTTTATAAAAAACTTTTAGTCTTCGAATTAAACA
66 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA-A
* * * * *
22574091 CTTATTCACGTGAGAATTTTTTCTCTCTTGGTTATTGGAAGAACT-TCTGAACATGTAAAAC-TT
130 CTTATTTACGTGAGAA-TTATT-TCTCTTGGTTCTTGGACGAACTATC-CAACATGTAAAACTTT
** * *
22574154 TACGAGCACCTTT-ATAAATTCT
192 TACGAG-TTCTTTCATAACTTCA
* ** * * * ** *
22574176 GTTCC-TAAAGTATTCAAGATGATCCATTCCTTTGAGCAGTTTT-TCGAACATTCCATTATCGGG
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCT-AAACATTCCATGCTCGAG
* * ** * * * *
22574239 AAGTTGCATCATTTTCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTTGTGTTTGAATCAAAA
65 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT-TAAA
* * * * * ** * *
22574304 ACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTCGATGAACTTTTGAAC-TAGTCAAACATTT
129 ACTTATTTACGTGAGAATTATTTCTCTTGGTTCTTGGACGAACTATCCAACAT-GTAAAACTTTT
**
22574368 ACGAGTTCCTTT-ATAACTTTG
193 ACGAGTT-CTTTCATAACTTCA
* ** * * * *
22574389 GTTCCTTAAAGTATTCAAGATGATCCATT-CTTCGAGCAATTTTCTGAACATTACAAT-CTTGGG
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATT-CCATGCTCGAG
** * * *
22574452 AAATCTTATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTATGGTCTTTGAATAAAAA
65 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT-TAAA
* * * * * **
22574517 ACTTATTTACGTAATAATTGTTTCTCTTGGTTTTTGGACGAACT-TCCGAACTTGTCCAACTTTT
129 ACTTATTTACGTGAGAATTATTTCTCTTGGTTCTTGGACGAACTATCC-AACATGTAAAACTTTT
* **
22574581 ACGAGTTCTTTTATAACTTTG
193 ACGAGTTCTTTCATAACTTCA
* * * * *
22574602 ATTCCTTAAAATATTCAAGACGAA-CCATTCATTCGAGCAATTCTCTAAACATTCCAAGCTCGGG
1 ATTCCTTAAAGTATTCAAGAC-AATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAG
* * * * *
22574666 GAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTATGAATTTAA
65 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAA-TTAA
* * *
22574731 CACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCCGAACATGTAAAACT
128 AACTTATTTACGTGAGAATT-ATT-TCTCTTGGTTCTTGGACGAACTATCC-AACATGTAAAACT
* *
22574795 TTTTCGAGTTCTTTCATAACTTCG
190 TTTACGAGTTCTTTCATAACTTCA
* * ** * * * * * * * *
22574819 GTTCCTTAAACTATTCAAGATGATCCATGCCTTCGAGCAATTTCCCAAGCATTGCTTGCTTGGGA
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGA
* * *
22574884 AATTGCATCATTTGGTCTAACTAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTACAAA
66 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAA
* * * * *
22574949 CTTATTTACGTGAGAATTGTTTCTCTATTTGTTCTT-G--G-AC--T--AAC-TTTCAAACTGTT
130 CTTATTTACGTGAGAATTATTTCTC--TTGGTTCTTGGACGAACTATCCAACATGTAAAACTTTT
* * **
22575005 ACGATTTCTTTTATAACTTTG
193 ACGAGTTCTTTCATAACTTCA
* * * * *
22575026 GTTCCTT--A-TATTCAAGACGAA-CCTTTCCTTCGAGCATTTTTCTGAACATTCAATGCTCGAG
1 ATTCCTTAAAGTATTCAAGAC-AATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAG
* * * * *
22575087 AACTCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTATTGGTCTTTGAATTAAAT
65 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA-
* * * *
22575152 ATTTATTT-CTGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATTCGAAC-TCGTAATAC
129 ACTTATTTAC-GTGAGAATT-ATT-TCTCTTGGTTCTTGGACGAACTA-TCCAACAT-GTAAAAC
* *
22575214 -TTTACGAGTTCTTTTATAACTTCG
189 TTTTACGAGTTCTTTCATAACTTCA
* * * * * * * * *
22575238 GTTCCTTTAAGTATTCAAAACGATCCATTCCTTCTAG-AGATTTT-TCGAAGATTCCATTCTTGA
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCA-ATTTTCT-AAACATTCCATGCTCGA
* * * * * *
22575301 AAAATCACATCTTTTGGTCTAAATAGTGTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATAAAA
64 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT-TAA
* * * * *
22575366 AACTTATTTACGTGAGAGTTGTTTCTCTTGGTTCTTGGAC-AAATTTCCAA-ATTTGTAAAAATT
128 AACTTATTTACGTGAGAATTATTTCTCTTGGTTCTTGGACGAACTATCCAACA--TGTAAAACTT
* *
22575429 TTACGAGTTCTTTTATAACTTCG
191 TTACGAGTTCTTTCATAACTTCA
* * * * * *
22575452 ATTCCTTACAGCATACAAGACGATTCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGA
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGA
*
22575517 AATCGCATCATTTGGTCTAAATA-TTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAGAA
66 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA-AA
* * * *
22575581 TTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCCGACTGTGTAAAACTTT
130 CTTATTTACGTGAGAATT-ATT-TCTCTTGGTTCTTGGACGAACTATCCAAC-ATGTAAAACTTT
* *
22575645 TTCGAGTTCTTTCATAACTTCG
192 TACGAGTTCTTTCATAACTTCA
* * * * * ** * *
22575667 ATTCCTTAAAGTATTAAAGGCAATCCATGCTTTCGAGCAATTTTCCAAACATTCTTTGCTTGGGA
1 ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGA
*** * * *
22575732 AATCATGTCATTTGGTCTAAATAGTTTGTCATTTTTTAAGCAAGTTTTGTTCTTTGAATTACAAA
66 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAA
*
22575797 CTTATTTATGTGAGAATTA
130 CTTATTTACGTGAGAATTA
22575816 CAACTTTTAC
Statistics
Matches: 2440, Mismatches: 503, Indels: 323
0.75 0.15 0.10
Matches are distributed among these distances:
183 7 0.00
185 4 0.00
186 7 0.00
188 8 0.00
189 6 0.00
190 3 0.00
191 16 0.01
192 9 0.00
193 15 0.01
194 11 0.00
195 2 0.00
196 5 0.00
197 16 0.01
198 10 0.00
199 20 0.01
200 5 0.00
201 25 0.01
202 16 0.01
203 18 0.01
204 138 0.06
205 23 0.01
206 16 0.01
207 45 0.02
208 14 0.01
210 1 0.00
211 2 0.00
212 76 0.03
213 311 0.13
214 637 0.26
215 482 0.20
216 217 0.09
217 275 0.11
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (213 bp):
ATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGA
AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAC
TTATTTACGTGAGAATTATTTCTCTTGGTTCTTGGACGAACTATCCAACATGTAAAACTTTTACG
AGTTCTTTCATAACTTCA
Found at i:22573992 original size:214 final size:215
Alignment explanation
Indices: 22573078--22575814 Score: 2720
Period size: 214 Copynumber: 12.8 Consensus size: 215
22573068 TGAGAATTAC
** * ** * * * * * * *
22573078 AACTTTTACGAACTCTTTTATAATTTTTGTTCCTCAAACTATTTATGACTATCCATTCCTTTGAT
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * * **
22573143 CAATTTTTCGAACAATCCATTATCGGGAAGTCGCATCATTTTGTGTAAATACATTGTCATTTTGT
66 CAATTTTTTGAACATTCCATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
22573208 AAACAAGTTTTGGT-TTTAAATAAAAAACTTTTTTATGTGAGAATTG-TT-TCTCTTGGTTCTTG
130 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
*
22573270 GATGAAC-TTCTGAACTTGTCA
195 GACGAACTTTC-GAACTTGTCA
* * * * *
22573291 AACTTTTACAAGTTCCTTTATAACTTCGGTTCCTT-AAGTATTCAATATGATCCATTCCATCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
22573355 GAATTTTTTGAACATTACATTCTCGGGAAATCGCATCATTTGGTCTAAATAGATTGTCATTCTAT
66 CAATTTTTTGAACATTCCATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
22573420 AAACAAGATTAGGTCTTTGAATAAAAAACTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTG
130 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
22573483 GACAAAC-TTCAGAACTTGTCC
195 GACGAACTTTC-GAACTTGTCA
** * * * ** * *
22573504 AACTTTTTTGAGTTCTTTTATAACTTTGATTCCTTAAAGCATTCAATTCGATCCTTTCATTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * * * **
22573569 CAATTGTCTAAACACTCCATGCTCGAGAAATCGTATCATTTGGTCTACATAGTTCATCATTTTGT
66 CAATTTTTTGAACATTCCATTCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * *
22573634 AGAA-AACTTTTGATCATTGAATTAAACACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTT
130 A-AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* *
22573698 GGACGAACTTCCGAACTTGTAA
194 GGACGAACTTTCGAACTTGTCA
* * * *
22573720 AAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCAAA
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* *
22573784 CAATTTTTTGAACATTCCATTCTCGAATAATCGCATCATTTGGTCTAAAGAGTTTGTCATTTTGT
66 CAATTTTTTGAACATTCCATTCTCGGA-AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * ** *
22573849 AAACAAGTTTTGATCTTTGAATAAAAAACTTGTTTACCTGAGAATTGTTTCTCT-TT-CCTATTG
130 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
22573912 GACGAACTTTCGAACTTGTCA
195 GACGAACTTTCGAACTTGTCA
* *
22573933 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATTCATTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
22573998 TAATTTTTTGAACATTCCATGCTCGGGAAATGGCATCATTTTGTCTAAATAGTTTGTCATTTTAT
66 CAATTTTTTGAACATTCCATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * * * *
22574063 AAAAAACTTTTAGTCTTCGAATTAAACACTTATTCACGTGAGAATTTTTTCTCTCTTGGTTATTG
130 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
22574128 GAAGAAC-TTCTGAACATGTAA
195 GACGAACTTTC-GAACTTGTCA
** * * * * *
22574149 AAC-TTTACGAGCACCTTTATAAATTCTGTTCC-TAAAGTATTCAAGATGATCCATTCCTTTGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * ** *
22574212 CAGTTTTTCGAACATTCCATTATCGGGAAGTTGCATCATTTTCTCTAAATAGTTTTTCATTTTGT
66 CAATTTTTTGAACATTCCATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
22574277 AAACAAGTTTTTGTGTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTC
130 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
22574340 GATGAACTTTTGAACTAGTCA
195 GACGAACTTTCGAACTTGTCA
* * * *
22574361 AACATTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATT-CTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * ** *
22574425 CAATTTTCTGAACATTACAATCTTGGGAAATCTTATCATTTGGTCTAAATAGATTGTCATTTTGT
66 CAATTTTTTGAACATTCCATTC-TCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * *
22574490 AAACAAGTTATGGTCTTTGAATAAAAAACTTATTTACGTAATAATTG-TT-TCTCTTGGTTTTTG
130 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
22574553 GACGAACTTCCGAACTTGTCC
195 GACGAACTTTCGAACTTGTCA
* * * * *
22574574 AACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAATATTCAAGACGAACCATTCATTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * ** * *
22574639 CAATTCTCTAAACATTCCAAGCTCGGGGAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGT
66 CAATTTTTTGAACATTCCATTCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * *
22574704 AAAAAAACTTTTGGTCTATGAATTTAACACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTT
130 -AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
22574769 GGACGAACATCCGAACATGTAA
194 GGACGAACTTTCGAACTTGTCA
* * * * *
22574791 AACTTTTTCGAGTTCTTTCATAACTTCGGTTCCTTAAACTATTCAAGATGATCCATGCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
*** * * * *
22574856 CAA-TTTCCCAAGCATTGC-TTGCTTGGGAAATTGCATCATTTGGTCTAACTAGTTTGTCATTTT
66 CAATTTTTTGAA-CATTCCATT-C-TCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * *
22574919 GTAAACAAGTTTTGTTCTTTGAATTACAAACTTATTTACGTGAGAATTGTTTCTCTATTTGTTCT
128 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
22574984 T-G--G-AC--T--AACTT-TCA
193 TGGACGAACTTTCGAACTTGTCA
* * * * *
22574998 AACTGTTACGATTTCTTTTATAACTTTGGTTCCTT--A-TATTCAAGACGAACCTTTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
22575060 C-ATTTTTCTGAACATTCAATGCTCGAGAACTCCCATCATTTGGTCTAAATAGTTTGTCATTTTG
66 CAATTTTT-TGAACATTCCATTCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
22575124 TAAAAAACTATTGGTCTTTGAATTAAATATTTATTT-CTGTGAGAATTGTTTCTCTCTTGGTTCT
129 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCT
* *
22575188 TGGACGAACATTCGAACTCGT-A
193 TGGACGAACTTTCGAACTTGTCA
* * *
22575210 ATAC-TTTACGAGTTCTTTTATAACTTCGGTTCCTTTAAGTATTCAAAACGATCCATTCCTTCTA
1 A-ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * * *
22575274 G-AGATTTTTCGAAGATTCCATTCTTGAAAAATCACATCTTTTGGTCTAAATAGTGTGTCATTTT
65 GCA-ATTTTTTGAACATTCCATTCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * *
22575338 GTAAACAAGTTTTGGTCTTTAAATAAAAAACTTATTTACGTGAGAGTTG-TT-TCTCTTGGTTCT
128 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * * *
22575401 TGGAC-AAATTTCCAAATTTGTAA
193 TGGACGAACTTT-CGAACTTGTCA
* * * * * *
22575424 AAATTTTACGAGTTCTTTTATAACTTCGATTCCTTACAGCATACAAGACGATTCATTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* *
22575489 CAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA-TTTGTCATTTTGT
66 CAATTTTTTGAACATTCCATTCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
22575553 AAACAAATTTTGGTCTTTGAATTAAGAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
130 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
22575618 GACGAACATCCG-ACTGTGTAA
195 GACGAACTTTCGAACT-TGTCA
* * * * * * * *
22575639 AACTTTTTCGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTAAAGGCAATCCATGCTTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
*** * * *** *
22575704 CAATTTTCCAAACATT-CTTTGCTTGGGAAATCATGTCATTTGGTCTAAATAGTTTGTCATTTTT
66 CAATTTTTTGAACATTCCATT-C-TCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
22575768 TAAGCAAGTTTTGTTCTTTGAATTACAAACTTATTTATGTGAGAATT
129 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
22575815 ACAACTTTTA
Statistics
Matches: 2077, Mismatches: 387, Indels: 117
0.80 0.15 0.05
Matches are distributed among these distances:
203 4 0.00
204 119 0.06
205 5 0.00
207 33 0.02
208 6 0.00
210 1 0.00
211 1 0.00
212 153 0.07
213 425 0.20
214 579 0.28
215 440 0.21
216 177 0.09
217 133 0.06
218 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
CAATTTTTTGAACATTCCATTCTCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
ACGAACTTTCGAACTTGTCA
Found at i:22574060 original size:429 final size:427
Alignment explanation
Indices: 22573078--22584284 Score: 8690
Period size: 428 Copynumber: 26.5 Consensus size: 427
22573068 TGAGAATTAC
** * ** * * * * * * *
22573078 AACTTTTACGAACTCTTTTATAATTTTTGTTCCTCAAACTATTTATGACTATCCATTCCTTTGAT
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * ** * * * * **
22573143 CAATTTTTCGAACAATCCATTATCGGGAAGTCGCATCATTTTGTGTAAATACATTGTCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
22573208 AAACAAGTTTTGGT-TTTAAATAAAAAACTTTTTTATGTGAGAATTGTT-TCTCTTGGTTCTTGG
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGG
* * * * *
22573271 ATGAACTTCTGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTCGGTTCCTT-AAGTATTCA
196 ACGAACTTCCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCA
* * * * * * * *
22573335 ATATGATCCATTCCATCGAGGAATTTTTTGAACATTACATTCTCGGGAAATCGCATCATTTGGTC
260 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-GAAAATCGCATCATTTGGTC
* * * ** * * *
22573400 TAAATAGATTGTCATTCTATAAACAAGATTAGGTCTTTGAATAAAAAACTTATTTATGTGAGAAT
324 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
22573465 TGTTTCTCTTGGTTCTTGGACAAAC-TTCAGAACTTGTCC
389 TGTTTCTCTTTGTTCTTGGACGAACATTC-GAACTTGTCA
** * * * ** * *
22573504 AACTTTTTTGAGTTCTTTTATAACTTTGATTCCTTAAAGCATTCAATTCGATCCTTTCATTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* ** * * * * * **
22573569 CAATTGTCTAAACACTCCATGCTCGAGAAATCGTATCATTTGGTCTACATAGTTCATCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * *
22573634 AGAA-AACTTTTGATCATTGAATTAAACACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTT
131 A-AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTT
*
22573698 GGACGAACTTCCGAACTTGTAAAACTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTC
194 GGACGAACTTCCGAACTTGTCAAACTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTC
* * * * *
22573763 AAGATGATCCATTCCTTCAAACAATTTTTTGAACATTCCATTCTCGAATAATCGCATCATTTGGT
259 AAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAA-AATCGCATCATTTGGT
* * * * * *
22573828 CTAAAGAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATAAAAAACTTGTTTACCTGAGAA
323 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
** * *
22573893 TTGTTTCTCTTTCCTATTGGACGAACTTTCGAACTTGTCA
388 TTGTTTCTCTTTGTTCTTGGACGAACATTCGAACTTGTCA
* *
22573933 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATTCATTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* ** * * * *
22573998 TAATTTTTTGAACATTCCATGCTCGGGAAATGGCATCATTTTGTCTAAATAGTTTGTCATTTTAT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * * * *
22574063 AAAAAACTTTTAGTCTTCGAATTAAACACTTATTCACGTGAGAATTTTTTCTCTCTTGGTTATTG
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TTGTTCTCTCTTGGTTCTTG
* * * * ** * *
22574128 GAAGAACTTCTGAACATGTAAAACTTTACGAGCACCTTTATAAATTCTG-TTCC-TAAAGTATTC
195 GACGAACTTCCGAACTTGTCAAACTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTC
* * * ** * * * **
22574191 AAGATGATCCATTCCTTTGAGCAGTTTT-TCGAACATTCCATTATCGGGAAGTTGCATCATTTTC
259 AAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTC-GAAAATCGCATCATTTGG
* * * * *
22574255 TCTAAATAGTTTTTCATTTTGTAAACAAGTTTTTGTGTTTGAATCAAAAACTTATTTACGTGAGA
322 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * * *
22574320 ATTGTTTCT-TTTGGTTCTTCGATGAACTTTTGAACTAGTCA
387 ATTGTTTCTCTTT-GTTCTTGGACGAACATTCGAACTTGTCA
* * * *
22574361 AACATTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATT-CTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * ** *
22574425 CAATTTTCTGAACATTACAAT-CTTGGGAAATCTTATCATTTGGTCTAAATAGATTGTCATTTTG
66 CAATTTTCCGAACATT-CCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
22574489 TAAACAAGTTATGGTCTTTGAATAAAAAACTTATTTACGTAATAATTGTT-TCTCTTGGTTTTTG
130 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTG
* * *
22574553 GACGAACTTCCGAACTTGTCCAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAATATTC
195 GACGAACTTCCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTC
* * * * * ** *
22574618 AAGACGAACCATTCATTCGAGCAATTCTCTAAACATTCCAAGCTCGGGGAATCGTATCATTTGGT
259 AAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-GAAAATCGCATCATTTGGT
* * * * *
22574683 CTAAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTATGAATTTAACACTTATTTACGTGAAA
323 CTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * *
22574748 ATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTAA
387 ATTGTTTCTCT-TT-GTTCTTGGACGAACATTCGAACTTGTCA
* * * * *
22574791 AACTTTTTCGAGTTCTTTCATAACTTCGGTTCCTTAAACTATTCAAGATGATCCATGCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
22574856 CAA-TTTCCCAAGCATTGCTTGCTTGGGAAATTGCATCATTTGGTCTAACTAGTTTGTCATTTTG
66 CAATTTTCCGAA-CATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
22574920 TAAACAAGTTTTGTTCTTTGAATTACAAACTTATTTACGTGAGAATTGTTTCTCTATTTGTTCTT
130 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTT
* * *
22574985 -G--G-AC-T---AACTT-TCAAACTGTTACGATTTCTTTTATAACTTTGGTTCCTT--A-TATT
194 GGACGAACTTCCGAACTTGTCAAACT-TTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT
* * * * * *
22575038 CAAGACGAACCTTTCCTTCGAGCATTTTTCTGAACATTCAATGCTCGAGAACTCCCATCATTTGG
258 CAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGA-AAATCGCATCATTTGG
* * * *
22575103 TCTAAATAGTTTGTCATTTTGTAAAAAACTATTGGTCTTTGAATTAAATATTTATTT-CTGTGAG
322 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC-GTGAG
*
22575167 AATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTCGT-A
386 AATTGTTTCTCT-TT-GTTCTTGGACGAACATTCGAACTTGTCA
* * *
22575210 ATAC-TTTACGAGTTCTTTTATAACTTCGGTTCCTTTAAGTATTCAAAACGATCCATTCCTTCTA
1 A-ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * ** * * *
22575274 G-AGATTTTTCGAAGATTCCATTCTTGAAAAATCACATCTTTTGGTCTAAATAGTGTGTCATTTT
65 GCA-ATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * *
22575338 GTAAACAAGTTTTGGTCTTTAAATAAAAAACTTATTTACGTGAGAGTTGTT-TCTCTTGGTTCTT
129 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTT
* * * * * * * * *
22575402 GGACAAATTTCCAAATTTGTAAAAATTTTACGAGTTCTTTTATAACTTCGATTCCTTACAGCATA
194 GGACGAACTTCCGAACTTGT-CAAACTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT
*
22575467 CAAGACGATTCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGG
258 CAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGA-AAATCGCATCATTTGG
* * *
22575532 TCTAAATA-TTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAGAATTTATTTACGTGAGA
322 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* *
22575596 ATTGTTTCTCTCTTGGTTCTTGGACGAACATCCG-ACTGTGTAA
387 ATTGTTTCTCT-TT-GTTCTTGGACGAACATTCGAACT-TGTCA
* * * * * * * *
22575639 AACTTTTTCGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTAAAGGCAATCCATGCTTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* ** *** *
22575704 CAATTTTCCAAACATTCTTTGCTTGGGAAATCATGTCATTTGGTCTAAATAGTTTGTCATTTTTT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * * * *
22575769 AAGCAAGTTTTGTTCTTTGAATTACAAACTTATTTATGTGAGAA-T-TACAACTTTTACGAGCTC
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTC-TCTCTT--G-GTTC
* * * * * * * **
22575832 TTTGA-TAA-TT-----TTTGTTC---C-TTA-AAG-T-ATTCATGA---CGA-TCCATT--CCT
192 TTGGACGAACTTCCGAACTTG-TCAAACTTTACGAGTTCTTTTATAACTTCGATTCC-TTAAAGT
* * ** * ** * *
22575877 -TT---GA-G--CAATT-TTTC-A--AACATTC-CATTA-T-C--G---GGAAGTCGCATCATTT
255 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAAAATCGCATCATTT
* * * * * *
22575923 TGTGTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATCAAAAACTTTTTTATGTGA
320 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* *
22575988 GAATTTTTTCTCTTGGTTCTTGGACGAA-ATTCTGAACTTGTCA
385 GAATTGTTTCTCTTTGTTCTTGGACGAACATTC-GAACTTGTCA
* * * *
22576031 AACTTTTACGAGTTCCTTTATAACTTCGGTTCCTT-GAGTATTCAAGATGATCCATTCCTTTGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
22576095 CAATTTTCTGAACATTACATTCTTGGGAAATCGCATCATTTGGTCTAAATAGATTGTCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
22576160 AAACAAGTTTTGGTCTTTGAATAAAAAACTTATTTATGTGAGAATTGTTC-CTCTTGGTTCTTGG
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGG
** * *
22576224 ACGAACTTTAGAACTTGTCCAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATGCA
196 ACGAACTTCCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCA
** * * * * * * ** *
22576289 ATTCGATTCATTCATTCGAGCAATTCTCTAAACATTCCAAGCTCAGGAAATCATATCATTTGTTC
260 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-GAAAATCGCATCATTTGGTC
***
22576354 TAAATAGTTTGTCATTTTGTAAAAAACTTGTCAAACTTTTACGAGTTCTTTTGTAACTTCTGAAC
324 TAAATAGTTTGTCATTTTGT---AAA-----C-AACTTTT--G-G-TC-TTTG-AA-TTAAAAAC
* * *
22576419 TTGTTTACGTTAGAATTGTTTCTCTTTGCTCTTGGACGAAC-TTCTGAACTTGTCA
373 TTATTTACGTGAGAATTGTTTCTCTTTGTTCTTGGACGAACATTC-GAACTTGTCA
* *
22576474 AACTTTTACGAGCTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* ** * * **
22576539 TAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTCGTCTAAATAGTAGGTCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * * *
22576604 AAAAAACTTTTGGTCTTCGAATTAAAAACTTATTCATGTGAGAATT-TTTTCTTCCTTGGTTATT
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTC-T-CTTGGTTCTT
* *
22576668 -G--GAA----C-AAC-T-T----C--T--GAGCTCTTTTATAATTTCTG-TTCC-TAAAGTATT
194 GGACGAACTTCCGAACTTGTCAAACTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATT
* * * ** * ** *
22576713 CAAGACGATCCATTCCTTTGACCAGTTTTCTGAACATTCCATTTTCGGGAAGCCGCATCATTTTG
258 CAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-GAAAATCGCATCATTTGG
* * *
22576778 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTAACAAGTTTTGGTCTTTCAATCAAAAAAT
322 TCTAAATAGTTTGTCATTTTGTAAAC----------AAC---TTTTGGTCTTTGAATTAAAAACT
* * * *
22576843 TATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCA
374 TATTTACGTGAGAATTGTTTCTCTTTGTTCTTGGACGAACATTCGAACTTGTCA
* * * *
22576897 AACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTAAAGTAATCGAGATGATCCATTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* ** * * ** *
22576962 TAATTTTCTAAACATTACATTCTCAGGAAATCGCATCATTTGGTCTAAATAGATTGTCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
*
22577027 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT-TCTCTTAGTTCTTGG
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGG
* * * * *
22577091 ACAAACTTCCGAACTTCTCCAACTTTTACGAGTACTTTTATAACTTTGATTACC-TAAAGTATTC
196 ACGAACTTCCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAACTTCGATT-CCTTAAAGTATTC
* * * * * * *
22577155 ATGATGATCCATTCATTCGAGCAATTCTCTGAACATTCCAAGATCGAGAAATCGTATCATTTGGT
259 AAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGA-AAATCGCATCATTTGGT
* * * *
22577220 CTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTAAATTAAACACTTATTTACGTGAAAA
323 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
22577285 TTGTTTCTCCCTTGGTTCTTGGACGAACA-TCTGAACATGTAA
388 TTGTTTCT--CTTTGTTCTTGGACGAACATTC-GAACTTGTCA
* * * * ** * *
22577327 AACTTTTTCGAGTTCCTTCATAACTTCAGTTCCTTAAACAATTCAAGACGATCCATACCTTCAAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
22577392 CAATTTTCCAAACATTGCTTGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * ** *
22577457 AAAAAAGTTTTGTTCTTTGAATTTCAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTT-
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTG
* * *
22577521 G--G-A----CGAACTT-TCAAACTGTTACAAATTCTTTTACAACTTC-AGTTCCTT--AGTATT
195 GACGAACTTCCGAACTTGTCAAACT-TTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATT
* * * * * * *
22577575 CAAGACGAACCTTTCCTTCGAGCAATTTTCCGAACATTCTATGCTCGGTAAATCACATTATTTGG
258 CAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-GAAAATCGCATCATTTGG
* * * * * *
22577640 TTTAAATAGTTTTTCATTTTGTAAAAAACTTTTGGTCTTTAAATTAAATACTTATTTCCGTGAGA
322 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * *
22577705 ATTGTTTCTCTTGGTTCTTGGACGAACTTTTGAACATGTCA
387 ATTGTTTCTCTTTGTTCTTGGACGAACATTCGAACTTGTCA
* * * * *
22577746 AACTTTTACGAGTTCCTTTATAGCTTCAGTTCCTTACAGTATTCAAGATGATCCATTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * *
22577811 CAATTTTCTGAACATTACATTCTCGGGAAATTGCATCATTTGGTCTAAATAGATTGTCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
*
22577876 AAACAAGTTTTGGTCTTTGAATAAAAAACTTATTTACGTGAGAATTGTT-TCTCTTGGTTCTTGG
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGG
** * * * * * **
22577940 ACGAACTTCTAAACTCGTCCAACTTTTAAGAGTACTTTTATAACTTTGATTCCCAAAAGTATTCA
196 ACGAACTTCCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCA
* * * * * * * *
22578005 TGATGATCCATTCATTCGAGCAATTCTCTAAACATTCCAAGCTCGAGAAATCGTATCATTTGGGC
260 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGA-AAATCGCATCATTTGGTC
* * * * * *
22578070 TAAATAATTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGAATTAAACACTTATTTATGTAAAAA
324 TAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
22578135 TTGTTTCTCTCTTGGTTCTTGGACG-ACATTAGAACATGTAA
388 TTGTTTCTCT-TT-GTTCTTGGACGAACATTCGAACTTGTCA
* * *
22578176 AACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATGCCTTCAAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
22578241 CAATTTTCCAAACATTGCTTGCTTGGGAAATCGCATTATTTGGTCTAAATAGTTTGTCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
22578306 AAACAAGTTTTGTTCTTTGAATTACAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTT-
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTG
*
22578370 G--G-A----CGAACTT-TCAAACTGTTACGAGCTCTTTTATAACTTCGATTCCTT--AGTATTC
195 GACGAACTTCCGAACTTGTCAAACT-TTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTC
* * * * *
22578425 ATGACGAACCTTTCCTTCGAGCAATTTT-TCGAACATTCTATGCTCGAGAAATTGCATCATTTGG
259 AAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGA-AAATCGCATCATTTGG
* * **
22578489 TCTAAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTATGAATTAATTACTTATTTACGTGAG
322 TCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* *
22578554 AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTCGT-A
386 AATTGTTTCTCT-TT-GTTCTTGGACGAACATTCGAACTTGTCA
* *
22578597 ATAC-TTTACGAGTTCTTTTATAACTT-GGTTCCTTAATGTATTCAAGACGATCCATTCCTTCTA
1 A-ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * * *
22578660 GCGATTTTACAAACATTCTATTCTTGGAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTG
65 GCAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
22578725 TAAACAAGTTTTGGTCGTTAAATAAAAAACTTATTTACGTGAGAGTTGTT-TCTCTTGGTTCTTG
130 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTG
* * * * * ** *
22578789 GATGAACTTTCGAACATGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTACTGTATAC
195 GACGAACTTCCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTC
* *
22578854 AAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCAACATTTGGT
259 AAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-GAAAATCGCATCATTTGGT
* * *
22578919 CTTAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAA
323 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * * * *
22578984 TTTTTTCTCTCTTGGTTCTTGGACGAAGATCCGACCATGTAA
388 TTGTTTCTCT-TT-GTTCTTGGACGAACATTCGAACTTGTCA
* * * * * *
22579026 AACTCTTT-TGAG--C-----GAA-----GTTCCTTAAAGTATTCTAGGCAATCCATGCCTTCGA
1 AACT-TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * *
22579078 GCAATTTTCCAAACATTCCTTGCTTGGGAAAACACGTCATTTGGCCTAAATAGTTTGTCATTTTG
65 GCAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * ** *
22579143 TAAACAAATTTTGTTCTTTGAATTACAAACTTATTTACGTGAGAA-T-TAC-AACTT--TT-AT-
130 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTG
* * * * * * * *
22579201 G-TG--C-T-----CTT-TTATAA-TTT-C-TGTTC-CTTA-AA-GT--ATTCATGACAATCTAT
195 GACGAACTTCCGAACTTGTCA-AACTTTACGAGTTCTTTTATAACTTCGATTCCTTA-AA-GTAT
**** * * ** * * * * * *
22579248 TC-CTTTGAGCAATT--TTC---CATACATTC--CA-TTACC--G---GGAAGTCGCATCATTTT
257 TCAAGACGATCCATTCCTTCGAGCA-ATTTTCTGAACATTCCATGCTCGAAAATCGCATCATTTG
* * * *
22579299 GTGTAAATAGATTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATAAAAAAACTTATTTACGTGA
321 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT-TAAAAACTTATTTACGTGA
* * * * * *
22579364 GAATTGTTCCTCTTGGTTTTTGGGC-AA-ATTTCAGAACTTGACC
385 GAATTGTTTCTCTTTGTTCTTGGACGAACA-TTC-GAACTTGTCA
* * ** *
22579407 AACTTTTACGAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAATTCGATCCATTCATTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
** * ** ***
22579472 CAATTTTCTAAACATTCCAAGCTTGGGAAATCATATCATTTGGTCTAAATAGTTCACCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * *
22579537 AAAAAACTTTTGGTATTTGAATTAAACATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTG
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTG
* * * *
22579602 GACGAACTTCCGAACTTGTAAAACTTTATGAGTTCTTATATAACCTCGATTCCTTAAAGTATTCA
195 GACGAACTTCCGAACTTGTCAAACTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCA
** * * * * *
22579667 AGATTATTCATTCCTTTGAGCAATTTTCCGAACATTCCATTCTCGGATAATCGCATCATTTGGTC
260 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-GAAAATCGCATCATTTGGTC
* * * *
22579732 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATAAAAAACTTGTTTACATGAGAAT
324 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
22579797 TGTTTCTTTTTGCTCTTGCACGAACTTTAGAACTTGTCA
389 TGTTTCTCTTTGTTCTTGGACGAACATTCGAACTTGTCA
* * * * * *
22579836 AACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATACAAGACAATCCATTCTTTTGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
22579901 TAATTTAT-TGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
66 CAATTT-TCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * * * * * *
22579965 TAAAAAACATTTT-CTCTTCGAATTAAACACTTATTCACATGAGAATTCTTTCTCTCTTGGTTAT
130 TAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCT
* * * ** *
22580029 TGGAAGAACTTCCGAACTTGTAAAACTTTACGAGCTCTTTCGTAATTTCTG-TTCC-TAAAGTAT
193 TGGACGAACTTCCGAACTTGTCAAACTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTAT
* * * * ** * *
22580092 TCAAGACGATTCATTCGTTTGAGCAGTTTTCTGAACATTCCATTATCGAGAAGTCGCATCATTTT
257 TCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGA-AAATCGCATCATTTG
* * *
22580157 GTCTAAATAGTTTGACATTTTGTAAACAACCTTTGGTCTTTGAATCAAAAACTTATTTACGTGAG
321 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * **
22580222 AATTGTTTCTCATGGTTCTTGGATGAACTTTTAAACTTGTCA
386 AATTGTTTCTCTTTGTTCTTGGACGAACATTCGAACTTGTCA
* * * * *
22580264 AACTTTTACGAGTTCCTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCTATTGCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
** * * * * * *
22580329 CAATTTTCTAAACATTACATTCTCGGGAAATTGCATCATTTCGTCTAAATAGATTGTCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
22580394 AAACAAATTTTTGGTATTTGAATTAAACACTTATTTACGTGAAAATTGTT-TCTCTTATGGTTCT
131 AAAC-AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTC-T-TGGTTCT
* * ** * * *
22580458 TGGATGAACATCCGAAAATGTAAAACTTTTTA-GAGTTCTTTCATAACTTCGGTTCCTTAAAGTA
193 TGGACGAACTTCCGAACTTGTCAAAC--TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTA
* * * ** * * * * *
22580522 TTCAAGACGATCCATGCCTTCAAGTAATTTTCCAAACATTGCTTGCTTGGGAAATCGCATTATTT
256 TTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGC-TCGAAAATCGCATCATTT
* * * * * *
22580587 GGTCTAAACAGATTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTACAAACTTATTTACATGA
320 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
*
22580652 GAATTGTTTCTCTCTTTGTTCTT-G--G---A-T-GAAATT-TCA
385 GAATTG-TT-TCTCTTTGTTCTTGGACGAACATTCGAACTTGTCA
* * * * *
22580688 AACTGTTACGAGTTCTTTTATAACTTCGATTCCTT--AGTATTCAAGATGAACCTTTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * *
22580751 CAATTTTTCAAACATTCTATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * *
22580816 AAAAAACTTTTGGTGTTTGAATTAAATACTTATTTCCGTGAGTATTGTTTCTCTCTTGGTTCTTG
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTG
* * * * *
22580881 GACGAACATCCAAACTTGT-AATACTTTACGAGTTCTTTTATAACTTTGGTTCCTTAATGTATTC
195 GACGAACTTCCGAACTTGTCAA-ACTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTC
* * * * * *
22580945 AAGACGATCCATTCCTTCTAGCGATTTTTTGAACATTCCATTCTTGGAAAATCACATCATTTGGT
259 AAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGC-TCGAAAATCGCATCATTTGGT
* ** * *
22581010 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTCAAATAAAAAACTTATTTACGTGAGAG
323 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
*
22581075 TTGTTTCTCTTGGTTCTTGGACGAAC-TTCCGAACTTGTCA
388 TTGTTTCTCTTTGTTCTTGGACGAACATT-CGAACTTGTCA
* * * * *
22581115 AACTTTTAGGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATACAAGACGATCCACTCCTTTGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * *
22581180 CAATTTTCTGAACATTCCATGCTCT-AGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTG
66 CAATTTTCCGAACATTCCATGCT-TGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * * *
22581244 TAAACAACTTTTGATTTTTGAAAT-AAAACTTATTTATGTGAGAATTTTTTCTCTCTTGGTTCTT
130 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TTGTTCTCTCTTGGTTCTT
* * * * * ** * *
22581308 GGACAAACATCCGACCATGTAAAACTTTTTTGAGTTATTTCATAACTTCGATTCCTTAAAGTATT
194 GGACGAACTTCCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT
* * * ** * * * * * * *
22581373 CAAGGCAATCCATGCCTTCGAGCAATTTTCCAAACATTCCTTTCTTGGGAAATCACGTGATTTGG
258 CAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGC-TCGAAAATCGCATCATTTGG
* * * *
22581438 TCTAAATAGATTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTACAAACTTATTTACGTGAGA
322 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
**** * ** * * * **
22581503 ATTACAACTTTTATGTGCTCTTTTA-TAA-TTTATGTTCTT-T-A
387 ATTGTTTCTCTT-TGT--TCTTGGACGAACATT-CGAACTTGTCA
* * * * * * ** * ** * *
22581544 AAGTATTCATGACGATCCATTCCTTTGAGCAATTTTCTGAACATT-CCGTTATTGGGAAGTCGCA
1 AACT-TT--T-ACGA---GTT-CTTTTA-TAA-CTTCGGTTCCTTAAAG-TATT--CAAGACG-A
* * * * * * * * * *
22581608 T-CATT--TT-GTGTAA--AT----AGATTGTCAT--TTTGTAAA--G-AACTTTTGGTCTTTGA
52 TCCATTCCTTCGAGCAATTTTCCGAACATT-CCATGCTTGGGAAATCGCATCATTTGGTC--TAA
***** * ** * * * * ** * **
22581658 ATAAAAAACTTACTTACGT-GAGAA-TTGT-GTCTCTTG-GTTCTTAGACGAATTT-C---AGAA
114 AT-AGTTTGTCA-TTTTGTAAACAAGTTTTGGTCT-TTGAATT-AAAAACTTATTTACGTGAGAA
* * * ** * * * * * *
22581715 CTTGTCCAACTTTTGTGAGTTCTTTTA-TAACTT-TG-A-TTCCTTAAAGTATT--GAATTC---
175 -TTGTTC-TC-TCT-TG-GTTCTTGGACGAACTTCCGAACTT-GTCAAACT-TTACGAGTTCTTT
* * ** * ** ** * * ** *
22581771 GAT-CCATTC-ATTCGATCAA-T-TCTCGAA-ACTTTCCA-AGCTT-GGGAAATCATAT--A-AT
233 TATAAC-TTCGATTCCTTAAAGTAT-TC-AAGACGATCCATTCCTTCGAGCAATTTTCTGAACAT
* * * ** * * * *
22581826 T---TGGTCCAAATAGT-TCATTTTTTTGT-AAAAAACTTTTGGTC--TTTGAATTAAAC-AC--
295 TCCATGCTCGAAA-A-TCGCATCATTTGGTCTAAATA-GTTT-GTCATTTTG---TAAACAACTT
* ** * * * *** * ** ** *
22581881 -T--TATTT-ACGTGAGAA-TTGTTT-C-T--CTCTTGGTTCT-TGGACGAACTT--TCGAACTA
353 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT--TTGTTCTTGGACGAAC-A
* **
22581934 GTAAAACTT-TACGA
415 TTCGAACTTGT-C-A
** * * * * * *
22581948 GTTCTTTTA-TA--AC---T-T-----CGATTCCTTATAGTAATT-GAGACGATCCATTCCTTTG
1 -AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT-ATTCAAGACGATCCATTCCTTCG
* ** * * *
22582000 AGCAATTTTCCGAACATTCCATTC-TCAGATAATCGCATGATTTGGCCGAAATAGTTTGTCATTT
64 AGCAATTTTCCGAACATTCCATGCTTGGGA-AATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * * *
22582064 TGTTAAACAAGTTTTGGTCTTTGAA-TAAAAACTTTTTTACATGAGAATTGTT-TCTTTTTGCTC
128 TG-TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTC
* ** * * *
22582127 TTGGACGAGCTTCAAAACTTATCAAACTTTTCTGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
192 TTGGACGAACTTCCGAACTTGTCAAACTTTAC-GAGTTCTTTTATAACTTCGATTCCTTAAAGTA
* * *
22582192 TTCAAGACAATCCATTCCTTCGAGTAATTTAT-TGAACATTCCATGCTCGGGAAATCGCATCATT
256 TTCAAGACGATCCATTCCTTCGAGCAATTT-TCTGAACATTCCATGCTC-GAAAATCGCATCATT
* * * * * *
22582256 TGGTTTAAATAGTTTGTCATTTTGTAAAAAACTGTTGGTCTTCGAATTAAACACTTATTCACGTG
319 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * *
22582321 AGAATTGTTTCTCTCTTGGTTATTGGAAGAAC-TTCCAAACTAGTAA
384 AGAATTGTTTCTCT-TT-GTTCTTGGACGAACATT-CGAACTTGTCA
* * * *
22582367 AAC-TTTACGAGCTCTTTTATAATTTCTGTTCC-TAAAGTATTCAAGACGATCCATTCCTTTGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * ** * * * * *
22582430 CAGTTTTCTGAACATTCCATTATCGAGAAGTCGCATCATTTTGTCTAAATAGTTTGACATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
** * * *
22582495 AAACAACCTTTGGTCTTTGAATCAAAACCTTATTTATGTGAGAATTGTT-TCTCTTGGTTCTTGG
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGG
* ** * * * *
22582559 ATGAACTTTTGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTCGGTTCCATAAAGTATTCA
196 ACGAACTTCCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCA
* ** * * * * * *
22582624 AGATGATCTGTTGCTTCGCGCAATTTTCTGAACATTACATTCTCAGGAAATCACATCATTTGGTC
260 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTC-GAAAATCGCATCATTTGGTC
* * * *
22582689 TAAATAGATTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATAAAAAACTTATTTACCTGAGAAT
324 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
22582754 TGTTTCTCTTGGATCTT-GACGAAC-TTCAGAACTTGTCT
389 TGTTTCTCTTTGTTCTTGGACGAACATTC-GAACTTGTCA
* *** *
22582792 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAATTTGATCCATTCATTC-AG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-
* ** * * * * *
22582856 GCAATTCTCTAAACATTCCAAGCTCGAGAAATCGTATAATTTGGTCTAAATAGTTTGTCATTTTG
65 GCAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
22582921 TAAACAAGTTTTGGACTTTGAATAAAAAACTTGTTTACGTGAGAATTGTT-TCTCTTTGCTCTTG
130 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTG
* ** * * * * *
22582985 GACGAAGTTCAAAACTTGTAAAAATTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAATTATTC
195 GACGAACTTCCGAACTTGT-CAAACTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTC
* * *
22583050 AAGACAATCCATTCCTTCGAGTAATTTAT-TGAACATTCCATGCTCGGGAAATCGCATCATTTGG
259 AAGACGATCCATTCCTTCGAGCAATTT-TCTGAACATTCCATGCTC-GAAAATCGCATCATTTGG
* * * * * * *
22583114 TCTAAATAGTTTTTCATTTTATAAAAAACTTTTGGTCTTCGAATTAAACACTTATTCACGTGAGT
322 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * *
22583179 ATTGTTTCTCTCTTGGTTATTGGAAGATC-TTCCGAACTTGTAA
387 ATTGTTTCTCT-TT-GTTCTTGGACGAACATT-CGAACTTGTCA
* **
22583222 AAC-TTTACGAGCTCTTTTATAACTTCTATTCC-TAAAGTATTCAAGACGATCCATTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * ** ** * * * * *
22583285 CAGTTTTCTGAACATTGTATTATCGGGAATTTGCATCATTTTGTCTAAATAGTTTATCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
** * *
22583350 AAACAACCTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAGTTGTT-TCTCTTGGTTCTTGG
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGG
* ** * *
22583414 ACAAACTTTTGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGACTCCTTAAAGTATTCA
196 ACGAACTTCCGAACTTGTCAAAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCA
* * * * * * *
22583479 AGATGATCCATTACTTCGAGCAATTTTCTGAACATTACATTCTTGGGAAATCACATCATTTGGTC
260 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGC-TCGAAAATCGCATCATTTGGTC
* * * * * *
22583544 TAAATAGATTGTCATTTTGTAAACAAGTTTTGGTTTTTAAATAAAAAACTTATTTACGTGAGAGT
324 TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
22583609 TGTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCT
389 TGTTTCTCTTTGTTCTTGGACGAACATTCGAACTTGTCA
* * * * *
22583648 AACTTTTATGAGTACTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCATTCAAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* ** * * * **
22583713 CAATTCTCTAAACATTCCAAGCTCGGGAAATCGTATCATTTGGTCTGTATAGTTTGTCATTTTGT
66 CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * * *
22583778 AAAAAACTTTTGGTATTTGAATTAAACACTTATTTATGTGAAAATTGTTTCTCTCTTGGTTCTTA
131 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTG
* * * * * *
22583843 GACGAACATCCGAA-TATGTAAAACTTTTTCGAGTTCTTTCATAACTTCGGTTCGTTAAAGTATT
195 GACGAACTTCCGAACT-TGTCAAAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT
* * ** * * * * *
22583907 CAAGACGATCCATGCCTTCAAGCAATTTTCCAAACATTGCTTGCTTGGGAAATCGCATTATTTGG
258 CAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGC-TCGAAAATCGCATCATTTGG
* * * * *
22583972 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTACAAGCTTATTTACATGAGA
322 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* *
22584037 ATTGTATCTCTTTTTTCTT-G--G---A--CGAACTT-TCA
387 ATTGTTTCTCTTTGTTCTTGGACGAACATTCGAACTTGTCA
* * *
22584069 AACTGTTACGAGTTCTTTTATAACTTCGGTTCCTT--AGTATTCAAGACGATCCATTACTTTGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * * * *
22584132 CGATTTTCTGAACATTCCATTG-TCGAGAAGTCGCATGATTTTGTCTAAATAGTTTGACATTTTG
66 CAATTTTCCGAACATTCCA-TGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
** * *
22584196 TAAACAACCTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTT
130 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTT
*
22584261 GGACGAACTTCTGAACTTGT-AAAC
194 GGACGAACTTCCGAACTTGTCAAAC
22584285 AACTTTTAGG
Statistics
Matches: 8599, Mismatches: 1705, Indels: 962
0.76 0.15 0.09
Matches are distributed among these distances:
379 1 0.00
380 9 0.00
381 28 0.00
382 57 0.01
383 36 0.00
384 8 0.00
386 2 0.00
388 12 0.00
389 7 0.00
390 19 0.00
391 137 0.02
392 67 0.01
393 168 0.02
394 83 0.01
395 18 0.00
396 11 0.00
397 7 0.00
398 8 0.00
399 19 0.00
400 17 0.00
401 19 0.00
402 22 0.00
403 10 0.00
404 6 0.00
405 14 0.00
406 11 0.00
407 12 0.00
408 23 0.00
409 17 0.00
410 6 0.00
411 8 0.00
412 17 0.00
413 20 0.00
414 19 0.00
415 16 0.00
416 15 0.00
417 36 0.00
418 182 0.02
419 495 0.06
420 376 0.04
421 496 0.06
422 131 0.02
423 277 0.03
424 94 0.01
425 74 0.01
426 330 0.04
427 709 0.08
428 1591 0.19
429 1354 0.16
430 769 0.09
431 268 0.03
432 54 0.01
433 27 0.00
435 2 0.00
436 10 0.00
437 6 0.00
438 12 0.00
439 14 0.00
440 19 0.00
441 96 0.01
442 4 0.00
443 90 0.01
444 123 0.01
445 2 0.00
446 9 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (427 bp):
AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
CAATTTTCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGG
ACGAACTTCCGAACTTGTCAAACTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAA
GACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAAAATCGCATCATTTGGTCTA
AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
TTTCTCTTTGTTCTTGGACGAACATTCGAACTTGTCA
Found at i:22576825 original size:13 final size:13
Alignment explanation
Indices: 22576801--22576826 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22576791 TCATTTTGTA
22576801 AACAAGTTTTGGT
1 AACAAGTTTTGGT
22576814 AACAAGTTTTGGT
1 AACAAGTTTTGGT
22576827 CTTTCAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
AACAAGTTTTGGT
Found at i:22577208 original size:214 final size:214
Alignment explanation
Indices: 22576684--22579189 Score: 2491
Period size: 214 Copynumber: 11.8 Consensus size: 214
22576674 ACTTCTGAGC
* * * *
22576684 TCTTTTATAATTTCTG-TTCC-TAAAGTATTCAAGACGATCCATTCCTTTGACCAGTTTTCTGAA
1 TCTTTTATAACTT-TGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA
** ** *
22576747 CATTCCATTTTCGGGAAGCCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * *
22576812 GTAACAAGTTTTGGTCTTTCAATCAAAAAATTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGG
130 GT--C----TTT-G------AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGG
*
22576877 ACGAACTTTTGAACTTGTCAAACTTTTACGAGT
182 ACGAACTTCTGAACTTGTCAAACTTTTACGAGT
* * * * * * * *
22576910 TCCTTTATAACTTCGGTTCCTTAAAGTAATCGAGATGATCCATTCCTTCGAGTAATTTTCTAAAC
1 TCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAAC
* * * *
22576975 ATTACATTCTCAGGAAATCGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGG
66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * *
22577040 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTAGTTCTTGGACAAACTTCCGAAC
131 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAAC
* *
22577105 TTCTCCAACTTTTACGAGT
196 TTGTCAAACTTTTACGAGT
* * * * *
22577124 ACTTTTATAACTTTGATTACC-TAAAGTATTCATGATGATCCATTCATTCGAGCAATTCTCTGAA
1 TCTTTTATAACTTTGATT-CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA
* * * * * *
22577188 CATTCCAAGATCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTG
65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * *
22577253 GTCTTTAAATTAAACACTTATTTACGTGAAAATTGTTTCTCCCTTGGTTCTTGGACGAACATCTG
130 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT--CTTGGTTCTTGGACGAACTTCTG
* * *
22577318 AACATGTAAAACTTTTTCGAGT
193 AACTTGTCAAACTTTTACGAGT
* * * ** * * **
22577340 TCCTTCATAAC-TTCAGTTCCTTAAACAATTCAAGACGATCCATACCTTCAAGCAATTTTCCAAA
1 TCTTTTATAACTTTGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA
* * * * *
22577404 CATTGCTTGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAAAAAAGTTTTG
65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* ** *
22577469 TTCTTTGAATTTCAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTT-G--G-A---C-G
130 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCTG
* * *
22577526 AACTT-TCAAACTGTTACAAAT
193 AACTTGTCAAACTTTTACGAGT
* * * * *
22577547 TCTTTTACAAC-TTCAGTTCCTT--AGTATTCAAGACGAACCTTTCCTTCGAGCAATTTTCCGAA
1 TCTTTTATAACTTTGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA
* * * * * * * *
22577609 CATTCTATGCTCGGTAAATCACATTATTTGGTTTAAATAGTTTTTCATTTTGTAAAAAACTTTTG
65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * *
22577674 GTCTTTAAATTAAATACTTATTTCCGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTTGAA
130 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAA
*
22577739 CATGTCAAACTTTTACGAGT
195 CTTGTCAAACTTTTACGAGT
* * * * *
22577759 TCCTTTATAGC-TTCAGTTCCTTACAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAA
1 TCTTTTATAACTTTGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA
* * * *
22577823 CATTACATTCTCGGGAAATTGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTG
65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* *
22577888 GTCTTTGAATAAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTAAA
130 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAA
* * *
22577953 CTCGTCCAACTTTTAAGAGT
195 CTTGTCAAACTTTTACGAGT
* ** * * * * *
22577973 ACTTTTATAACTTTGATTCCCAAAAGTATTCATGATGATCCATTCATTCGAGCAATTCTCTAAAC
1 TCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAAC
* * * * * * *
22578038 ATTCCAAGCTCGAGAAATCGTATCATTTGGGCTAAATAATTTGTCATTTTGTAAAAAAACTTTTG
66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTG
* * * * *
22578103 GTCTTTGAATTAAACACTTATTTATGTAAAAATTGTTTCTCTCTTGGTTCTTGGACG-ACATT-A
130 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAAC-TTCT
* *
22578166 GAACATGTAAAACTTTTACGAGT
192 GAACTTGTCAAACTTTTACGAGT
* * * * * **
22578189 TCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATGCCTTCAAGCAATTTTCCAAAC
1 TCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAAC
* * * * *
22578254 ATTGCTTGCTTGGGAAATCGCATTATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGT
66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * *
22578319 TCTTTGAATTACAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTT-G--G-A---C-GA
131 TCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCTGA
* *
22578376 ACTT-TCAAACTGTTACGAGC
194 ACTTGTCAAACTTTTACGAGT
* * * *
22578396 TCTTTTATAACTTCGATTCCTT--AGTATTCATGACGAACCTTTCCTTCGAGCAATTTT-TCGAA
1 TCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAA
* * * * *
22578458 CATTCTATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAACTTTT
65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTT
* ** * *
22578523 GGTCTATGAATTAATTACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
129 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCT
*
22578588 GAACTCGT-AATAC-TTTACGAGT
192 GAACTTGTCAA-ACTTTTACGAGT
* * * * *
22578610 TCTTTTATAAC-TTGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCTAGCGATTTTAC-AAA
1 TCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-CTGAA
* * * * *
22578673 CATTCTATTCTTGGAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTG
65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * *
22578738 GTCGTTAAATAAAAAACTTATTTACGTGAGAGTTGTTTCTCTTGGTTCTTGGATGAACTT-TCGA
130 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCT-GA
*
22578802 ACATGTCAAACTTTTACGAGT
194 ACTTGTCAAACTTTTACGAGT
* ** *
22578823 TCTTTTATAACTTTGGTTCCTTACTGTATACAAGACGATCCATTCCTTCGAGCAATTTTCTGAAC
1 TCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAAC
* * * *
22578888 ATTCCATGCTCGGGAAATCGCAACATTTGGTCTTAATAGATTGTCATTTTGTAAACAACTTTTGG
66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * ** *
22578953 TCTTTGAATTAAAAACTTATTTACGTGAAAATTTTTTCTCTCTTGGTTCTTGGACGAAGATCCGA
131 TCTTTGAATTAAAAACTTATTTACGTGAGAA-TTGTT-TCTCTTGGTTCTTGGACGAACTTCTGA
* * * *
22579018 CCATGTAAAACTCTTT-TGAG-
194 ACTTGTCAAACT-TTTACGAGT
* * * * * **
22579038 -C-----GAA----G-TTCCTTAAAGTATTCTAGGCAATCCATGCCTTCGAGCAATTTTCCAAAC
1 TCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAAC
* * * * * * * *
22579092 ATTCCTTGCTTGGGAAAACACGTCATTTGGCCTAAATAGTTTGTCATTTTGTAAACAAATTTTGT
66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
*
22579157 TCTTTGAATTACAAACTTATTTACGTGAGAATT
131 TCTTTGAATTAAAAACTTATTTACGTGAGAATT
22579190 ACAACTTTTA
Statistics
Matches: 1894, Mismatches: 335, Indels: 125
0.80 0.14 0.05
Matches are distributed among these distances:
203 14 0.01
204 126 0.07
205 195 0.10
206 56 0.03
207 65 0.03
208 10 0.01
209 4 0.00
210 1 0.00
211 5 0.00
212 64 0.03
213 35 0.02
214 661 0.35
215 190 0.10
216 324 0.17
217 25 0.01
218 3 0.00
220 1 0.00
221 3 0.00
225 2 0.00
226 15 0.01
227 95 0.05
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (214 bp):
TCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAAC
ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAAC
TTGTCAAACTTTTACGAGT
Found at i:22579341 original size:178 final size:179
Alignment explanation
Indices: 22579042--22579368 Score: 444
Period size: 178 Copynumber: 1.8 Consensus size: 179
22579032 TTTGAGCGAA
* * *
22579042 GTTCCTTAAAGTATTCTAGGCAATCCATGCCTTCGAGCAATTTTCCAAACATTCCTTGCTTGGGA
1 GTTCCTTAAAGTATTCTAGACAATCCATGCCTTCGAGCAATTTTCCAAACATTCCTTACTCGGGA
* * * * *
22579107 AAACACGTCATTTGGCCTAAATAGTTTGTCATTTTGTAAACAAATTTTGTTCTTTGAAT-TACAA
66 AAACACATCATTTGGCCTAAATAGATTGTCATTTTGTAAACAAATTTTGGTCTTTGAATAAAAAA
22579171 ACTTATTTACGTGAGAATTACAACTTTTATGTGCTCTTTTATAATTTCT
131 ACTTATTTACGTGAGAATTACAACTTTTATGTGCTCTTTTATAATTTCT
* * * *
22579220 GTTCCTTAAAGTATTC-ATGACAATCTATTCCTTTGAGCAATTTTCCATACATTCCATTAC-CGG
1 GTTCCTTAAAGTATTCTA-GACAATCCATGCCTTCGAGCAATTTTCCAAACATTCC-TTACTCGG
** * * ** *
22579283 GAAGTCGCATCATTTTGTGTAAATAGATTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATAAAA
64 GAAAACACATCATTTGGCCTAAATAGATTGTCATTTTGTAAACAAATTTTGGTCTTTGAATAAAA
22579348 AAACTTATTTACGTGAGAATT
129 AAACTTATTTACGTGAGAATT
22579369 GTTCCTCTTG
Statistics
Matches: 127, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
177 1 0.01
178 101 0.80
179 25 0.20
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (179 bp):
GTTCCTTAAAGTATTCTAGACAATCCATGCCTTCGAGCAATTTTCCAAACATTCCTTACTCGGGA
AAACACATCATTTGGCCTAAATAGATTGTCATTTTGTAAACAAATTTTGGTCTTTGAATAAAAAA
ACTTATTTACGTGAGAATTACAACTTTTATGTGCTCTTTTATAATTTCT
Found at i:22579955 original size:214 final size:216
Alignment explanation
Indices: 22579205--22581505 Score: 2427
Period size: 215 Copynumber: 10.8 Consensus size: 216
22579195 TTTTATGTGC
* * * * * * *
22579205 TCTTTTATAATTTCTGTTCCTTAAAGTATTCATGACAATCTATTCCTTTGAGCAATTTTCCATAC
1 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTAAAC
* * * * *
22579270 ATTCCATTAC-CGGGAAGTCGCATCATTTTGTGTAAATAGATTGTCATTTTGTAAACAAGTTTTG
66 ATTCCA-TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * * *
22579334 GTCTTTGAATAAAAAAACTTATTTACGTGAGAATTG-TTC-CTCTTGGTTTTTGGGCAAATTTCA
130 GTCTTTGAAT-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
* *
22579397 GAACTTGACCAACTTTTACGAGT
194 GAACTTGTCAAACTTTTACGAGT
* * ** * *
22579420 TCATTTATAACTTCGATTCCTTAAAGTATTCAATTCGATCCATTCATTCGAGCAATTTTCTAAAC
1 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTAAAC
* * ** *** * *
22579485 ATTCCAAGCTTGGGAAATCATATCATTTGGTCTAAATAGTTCACCATTTTGTAAAAAACTTTTGG
66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * *
22579550 TATTTGAATTAAACATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAACTTCCGA
131 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* *
22579615 ACTTGTAAAAC-TTTATGAGT
196 ACTTGTCAAACTTTTACGAGT
* * * ** * **
22579635 TCTTATATAACCTCGATTCCTTAAAGTATTCAAGATTATTCATTCCTTTGAGCAATTTTCCGAAC
1 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTAAAC
*
22579700 ATTCCATTCTC-GGATAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
66 ATTCCATGCTCGGGA-AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * * * **
22579764 GTCTTTGAATAAAAAACTTGTTTACATGAGAATTGTTTCT-T-TTTGCTCTTGCACGAACTTTAG
130 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCG
*
22579827 AACTTGTCAAACTTTTTCGAGT
195 AACTTGTCAAACTTTTACGAGT
* * * * * *
22579849 TCTTTTATAACTTTGGTTCCTTAAAGTATACAAGACAATCCATTCTTTTGAGTAATTTAT-TGAA
1 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTT-TCTAAA
* * *
22579913 CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACATTTT
65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTT
* * * * * * * *
22579978 -CTCTTCGAATTAAACACTTATTCACATGAGAATTCTTTCTCTCTTGGTTATTGGAAGAACTTCC
129 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
* *
22580042 GAACTTGTAAAAC-TTTACGAGC
194 GAACTTGTCAAACTTTTACGAGT
** * * * * * *
22580064 TCTTTCGTAATTTCTGTTCC-TAAAGTATTCAAGACGATTCATTCGTTTGAGCAGTTTTCTGAAC
1 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTAAAC
** * * * * **
22580128 ATTCCATTATCGAGAAGTCGCATCATTTTGTCTAAATAGTTTGACATTTTGTAAACAACCTTTGG
66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * ***
22580193 TCTTTGAATCAAAAACTTATTTACGTGAGAATTG-TT-TCTCATGGTTCTTGGATGAACTTTTAA
131 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
22580256 ACTTGTCAAACTTTTACGAGT
196 ACTTGTCAAACTTTTACGAGT
* * * * * *
22580277 TCCTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCTATTGCTTCGAGCAATTTTCTAAAC
1 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTAAAC
* * * * * *
22580342 ATTACATTCTCGGGAAATTGCATCATTTCGTCTAAATAGATTGTCATTTTGTAAACAAATTTTTG
66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC-AAGTTTTG
* * * * *
22580407 GTATTTGAATTAAACACTTATTTACGTGAAAATTGTTTCTCT-TATGGTTCTTGGATGAACATCC
130 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACTTCC
** *
22580471 GAAAATGTAAAACTTTTTA-GAGT
194 GAACTTGTCAAAC-TTTTACGAGT
* * ** * *
22580494 TCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATGCCTTCAAGTAATTTTCCAAAC
1 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTAAAC
* * * * * * *
22580559 ATTGCTTGCTTGGGAAATCGCATTATTTGGTCTAAACAGATTGTCATTTTGTAAACAAGTTTTGT
66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * *
22580624 TCTTTGAATTACAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTT-G--G-A--T--GA
131 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* *
22580681 AATT-TCAAACTGTTACGAGT
196 ACTTGTCAAACTTTTACGAGT
* * * * *
22580701 TCTTTTATAACTTCGATTCCTT--AGTATTCAAGATGAACCTTTCCTTCGAGCAATTTT-TCAAA
1 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCT-AAA
* * * * *
22580763 CATTCTATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTG
65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * * *
22580828 GTGTTTGAATTAAATACTTATTTCCGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACATCCA
130 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCG
22580893 AACTTGT-AATAC-TTTACGAGT
195 AACTTGTCAA-ACTTTTACGAGT
* * * * *
22580914 TCTTTTATAACTTTGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCT-AGCGATTTTTTGAA
1 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAGCAATTTTCTAAA
* * * *
22580978 CATTCCATTCTTGGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
** * *
22581043 GTCTTCAAATAAAAAACTTATTTACGTGAGAGTTG-TT-TCTCTTGGTTCTTGGACGAACTTCCG
130 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCG
*
22581106 AACTTGTCAAACTTTTAGGAGT
195 AACTTGTCAAACTTTTACGAGT
* * * *
22581128 TCTTTCATAACTTCGGTTCCTTAAAGTATACAAGACGATCCACTCCTTTGAGCAATTTTCTGAAC
1 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTAAAC
** * * *
22581193 ATTCCATGCTCTAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGA
66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * * * *
22581258 TTTTTGAAAT-AAAACTTATTTATGTGAGAATTTTTTCTCTCTTGGTTCTTGGACAAACATCCGA
131 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* * * **
22581322 CCATGTAAAACTTTTTTGAGT
196 ACTTGTCAAACTTTTACGAGT
* * * * * * * *
22581343 TATTTCATAACTTCGATTCCTTAAAGTATTCAAGGCAATCCATGCCTTCGAGCAATTTTCCAAAC
1 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTAAAC
* * * * * * * *
22581408 ATTCCTTTCTTGGGAAATCACGTGATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGT
66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
*
22581473 TCTTTGAATTACAAACTTATTTACGTGAGAATT
131 TCTTTGAATTAAAAACTTATTTACGTGAGAATT
22581506 ACAACTTTTA
Statistics
Matches: 1718, Mismatches: 326, Indels: 83
0.81 0.15 0.04
Matches are distributed among these distances:
205 130 0.08
206 5 0.00
207 29 0.02
208 6 0.00
209 1 0.00
210 1 0.00
211 1 0.00
212 32 0.02
213 144 0.08
214 505 0.29
215 595 0.35
216 127 0.07
217 137 0.08
218 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTAAAC
ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
ACTTGTCAAACTTTTACGAGT
Found at i:22581629 original size:178 final size:178
Alignment explanation
Indices: 22581363--22581683 Score: 453
Period size: 178 Copynumber: 1.8 Consensus size: 178
22581353 CTTCGATTCC
* * *
22581363 TTAAAGTATTCAAGGCAATCCATGCCTTCGAGCAATTTTCCAAACATTCCTTTCTTGGGAAATCA
1 TTAAAGTATTCAAGACAATCCATGCCTTCGAGCAATTTTCCAAACATTCCGTTATTGGGAAATCA
* * * * * * *
22581428 CGTGATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTACAAACTTAT
66 CATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATAAAAAACTTAC
22581493 TTACGTGAGAATTACAACTTTTATGTGCTCTTTTATAATTTATGTTCT
131 TTACGTGAGAATTACAACTTTTATGTGCTCTTTTATAATTTATGTTCT
* * * * ** * *
22581541 TTAAAGTATTCATGACGATCCATTCCTTTGAGCAATTTTCTGAACATTCCGTTATTGGGAAGTCG
1 TTAAAGTATTCAAGACAATCCATGCCTTCGAGCAATTTTCCAAACATTCCGTTATTGGGAAATCA
* * *
22581606 CATCATTTTGTGTAAATAGATTGTCATTTTGTAAAGAACTTTTGGTCTTTGAATAAAAAACTTAC
66 CATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATAAAAAACTTAC
22581671 TTACGTGAGAATT
131 TTACGTGAGAATT
22581684 GTGTCTCTTG
Statistics
Matches: 122, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
178 122 1.00
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (178 bp):
TTAAAGTATTCAAGACAATCCATGCCTTCGAGCAATTTTCCAAACATTCCGTTATTGGGAAATCA
CATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATAAAAAACTTAC
TTACGTGAGAATTACAACTTTTATGTGCTCTTTTATAATTTATGTTCT
Found at i:22581891 original size:214 final size:214
Alignment explanation
Indices: 22581541--22584284 Score: 2893
Period size: 214 Copynumber: 12.9 Consensus size: 214
22581531 TTTATGTTCT
* * * ** * *
22581541 TTAAAGTATTCATGACGATCCATTCCTTTGAGCAATTTTCTGAACATTCCGTTATTGGGAAGTCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATCG
* * * * * *
22581606 CATCATTTTGTGTAAATAGATTGTCATTTTGTAAAGAACTTTTGGTCTTTGAATAAAAAACTTAC
65 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * **
22581671 TTACGTGAGAATTGTGTCTCTTGGTTCTTAGACGAA-TTTCAGAACTTGTCCAACTTTTGTGAGT
130 TTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTACGAGT
*
22581735 TCTTTTATAACTTTGATTCC
195 TCTTTTATAACTTCGATTCC
* ** * * * * * * *
22581755 TTAAAGTATTGAATTCGATCCATTCATTCGATCAATTCTCGAAACTTTCCAAGCTTGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCG-AACATTCCATGCTCGGGAAATCG
* * * ** ** * *
22581820 TATAATTTGGTCCAAATAGTTCATTTTTTTGTAAAAAACTTTTGGTCTTTGAATTAAACACTTAT
65 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* *
22581885 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTAGTAAAAC-TTTACGA
130 TTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTACGA
22581948 GTTCTTTTATAACTTCGATTCC
193 GTTCTTTTATAACTTCGATTCC
* * * * *
22581970 TTATAGTAATT-GAGACGATCCATTCCTTTGAGCAATTTTCCGAACATTCCATTCTC-AGATAAT
1 TTAAAGT-ATTCAAGACGATCCATTCCTTCGAGCAATTTT-CGAACATTCCATGCTCGGGA-AAT
* * * *
22582033 CGCATGATTTGGCCGAAATAGTTTGTCATTTTGTTAAACAAGTTTTGGTCTTTGAA-TAAAAACT
63 CGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * * *
22582097 TTTTTACATGAGAATTGTTTCTTTTTGCTCTTGGACGAGC-TTCAAAACTTATCAAACTTTT-CT
127 TATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTAC-
*
22582160 GAGTTCTTTTATAACTTCGGTTCC
191 GAGTTCTTTTATAACTTCGATTCC
* * *
22582184 TTAAAGTATTCAAGACAATCCATTCCTTCGAGTAATTTATTGAACATTCCATGCTCGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-TCGAACATTCCATGCTCGGGAAATCG
* * * * *
22582249 CATCATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAACTGTTGGTCTTCGAATTAAACACTTAT
65 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * *
22582314 TCACGTGAGAATTGTTTCTCTCTTGGTTATTGGAAGAACTTCCA-AACTAGTAAAAC-TTTACGA
130 TTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTACGA
* *
22582377 GCTCTTTTATAATTTCTG-TTCC
193 GTTCTTTTATAACTTC-GATTCC
* * ** * *
22582399 -TAAAGTATTCAAGACGATCCATTCCTTTGAGCAGTTTTCTGAACATTCCATTATCGAGAAGTCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATCG
* * * * *
22582463 CATCATTTTGTCTAAATAGTTTGACATTTTGTAAACAACCTTTGGTCTTTGAATCAAAACCTTAT
65 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * *
22582528 TTATGTGAGAATTGTTTCTCTTGGTTCTTGGATGAACTTT-TGAACTTGTCAAACTTTTACAAGT
130 TTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTACGAGT
* *
22582592 TCCTTTATAACTTCGGTTCC
195 TCTTTTATAACTTCGATTCC
* * ** * * * * * *
22582612 ATAAAGTATTCAAGATGATCTGTTGCTTCGCGCAATTTTCTGAACATTACATTCTCAGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATCG
* * *
22582677 CATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATAAAAAACTTAT
65 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * *
22582742 TTACCTGAGAATTGTTTCTCTTGGATCTT-GACGAAC-TTCAGAACTTGTCTAACTTTTACGAGT
130 TTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTACGAGT
22582805 TCTTTTATAACTTCGATTCC
195 TCTTTTATAACTTCGATTCC
*** * * * * *
22582825 TTAAAGTATTCAATTTGATCCATTCATTC-AGGCAATTCTCTAAACATTCCAAGCTCGAGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTC-GAACATTCCATGCTCGGGAAATC
* * * * * *
22582889 GTATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTTTGAATAAAAAACTTG
64 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
22582954 TTTACGTGAGAATTGTTTCTCTTTGCTCTTGGACGAA-GTTCAAAACTTGTAAAAATTTTACAAG
129 TTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTACGAG
*
22583018 TTCTTTTATAACTTCGGTTCC
194 TTCTTTTATAACTTCGATTCC
* * * *
22583039 TTAAATTATTCAAGACAATCCATTCCTTCGAGTAATTTATTGAACATTCCATGCTCGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-TCGAACATTCCATGCTCGGGAAATCG
* * * * *
22583104 CATCATTTGGTCTAAATAGTTTTTCATTTTATAAAAAACTTTTGGTCTTCGAATTAAACACTTAT
65 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * *
22583169 TCACGTGAGTATTGTTTCTCTCTTGGTTATTGGAAGATC-TTCCGAACTTGTAAAAC-TTTACGA
130 TTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTACGA
* *
22583232 GCTCTTTTATAACTTCTATTCC
193 GTTCTTTTATAACTTCGATTCC
* ** ** * *
22583254 -TAAAGTATTCAAGACGATCCATTCCTTCGAGCAGTTTTCTGAACATTGTATTATCGGGAATTTG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATCG
* * * *
22583318 CATCATTTTGTCTAAATAGTTTATCATTTTGTAAACAACCTTTGGTCTTTGAATCAAAAACTTAT
65 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * *
22583383 TTACGTGAGAGTTGTTTCTCTTGGTTCTTGGACAAACTTT-TGAACTTGTCAAACTTTTACGAGT
130 TTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTACGAGT
* *
22583447 TCCTTTATAACTTCGACTCC
195 TCTTTTATAACTTCGATTCC
* * * * * *
22583467 TTAAAGTATTCAAGATGATCCATTACTTCGAGCAATTTTCTGAACATTACATTCTTGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATCG
* * * * *
22583532 CATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGGTTTTTAAATAAAAAACTTAT
65 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * *
22583597 TTACGTGAGAGTTGTTTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCTAACTTTTATGAGT
130 TTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTACGAGT
*
22583661 ACTTTTATAACTTCGATTCC
195 TCTTTTATAACTTCGATTCC
* * * * *
22583681 TTAAAGTATTCAAGACGATCCATTCATTCAAGCAATTCTCTAAACATTCCAAGCTCGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGGGAAATCG
* ** * * *
22583746 TATCATTTGGTCTGTATAGTTTGTCATTTTGTAAAAAACTTTTGGTATTTGAATTAAACACTTAT
65 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * *
22583811 TTATGTGAAAATTGTTTCTCTCTTGGTTCTTAGACGAAC-ATCCGAA-TATGTAAAACTTTTTCG
130 TTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCAGAACT-TGTCAAACTTTTACG
* * *
22583874 AGTTCTTTCATAACTTCGGTTCG
192 AGTTCTTTTATAACTTCGATTCC
* * * * * *
22583897 TTAAAGTATTCAAGACGATCCATGCCTTCAAGCAATTTTCCAAACATTGCTTGCTTGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-CGAACATTCCATGCTCGGGAAATCG
* * * * *
22583962 CATTATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTACAAGCTTAT
65 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * **
22584027 TTACATGAGAATTGTATCTCTTTTTTCTTGGACGAACTTTCA-AAC-TG--------TTACGAGT
130 TTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTACGAGT
*
22584082 TCTTTTATAACTTCGGTTCC
195 TCTTTTATAACTTCGATTCC
* * * * *
22584102 TT--AGTATTCAAGACGATCCATTACTTTGAGCGATTTTCTGAACATTCCATTG-TCGAGAAGTC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-GAACATTCCA-TGCTCGGGAAATC
* * * * *
22584164 GCATGATTTTGTCTAAATAGTTTGACATTTTGTAAACAACCTTTGGTCTTTGAATTAAAATCTTA
64 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* *
22584229 TTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAAC-TTCTGAACTTGT-AAAC
129 TTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAAC
22584285 AACTTTTAGG
Statistics
Matches: 2097, Mismatches: 376, Indels: 117
0.81 0.15 0.05
Matches are distributed among these distances:
202 1 0.00
203 115 0.05
204 6 0.00
205 49 0.02
206 2 0.00
212 66 0.03
213 286 0.14
214 1103 0.53
215 178 0.08
216 283 0.13
217 8 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (214 bp):
TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATCGC
ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
TACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAGAACTTGTCAAACTTTTACGAGTT
CTTTTATAACTTCGATTCC
Found at i:22583194 original size:855 final size:850
Alignment explanation
Indices: 22579208--22584284 Score: 4946
Period size: 855 Copynumber: 6.0 Consensus size: 850
22579198 TATGTGCTCT
* * ** * * *
22579208 TTTATAATTTCTG-TTCCTTAAAGTATTCATGACAATCTATTCCTTTGAGCAATTTTC-CATACA
1 TTTATAACTTC-GATTCCTTAAAGTATTCAAGATGATCCATT-CTTCGAGCAATTTTCTGA-ACA
* * * * * *
22579271 TTCCATTAC-CGGGAAGTCGCATCATTTTGTGTAAATAGATTGTCATTTTGTAAACAAGTTTTGG
63 TTACATT-CTTGGGAAATCACATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGG
* * * *
22579335 TCTTTGAATAAAAAAACTTATTTACGTGAGAATTGTTCCTCTTGGTTTTTGGGC-AAATTTCAGA
127 TCTTTGAAT-AAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTC-GA
* * *
22579399 ACTTGACCAACTTTTACGAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAATTCGATCCATT
190 ACTTGTCTAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAA--CGATCCATT
* * * * * **
22579464 CATTC-GAGCAATTTTCTAAACATTCCAAGCTTGGGAAATCATATCATTTGGTCTAAATAGTTCA
253 CATTCAG-GCAATTCTCTAAACATTCCAAGCTCGAGAAATCGTATAATTTGGTCTAAATAGTTTG
* * * * *
22579528 CCATTTTGTAAAAAACTTTTGGTA-TTTGAATTAAACATTTATTTACGTGAGAATTGTTTCTCTC
317 TCATTTTGTAAACAAGTTTTGG-ACTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCT-
* * * ** * * *
22579592 TTGGTTCCTGGACGAACTTCCGAACTTGTAAAACTTTAT-GAGTTCTTATATAACCTCGATTCCT
379 TT-GCTCTTGGACGAAGTTCAAAACTTGTAAAACTTT-TCGAGTTCTTTTATAACTTCGGTTCCT
** * * * * *
22579656 TAAAGTATTCAAGATTATTCATTCCTTTGAGCAATTT-TCCGAACATTCCATTCTC-GGATAATC
442 TAAAGTATTCAAGACAATCCATTCCTTCGAGTAATTTAT-TGAACATTCCATGCTCGGGA-AATC
* * * * * *
22579719 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATAAAAAACTTG
505 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTCGAATTAAACACTTA
* * * * * * * * * *
22579784 TTTACATGAGAATTGTTTCT-T-TTTGCTCTTGCACGAACTT-TAGAACTTGTCAAACTTTTTCG
570 TTCACGTGAGAATTGTTTCTCTCTTGGTTATTGGAAGAACTTCCA-AAC-TGTAAAAC-TTTACG
* * * * * *
22579846 AGTTCTTTTATAACTT-TGGTTCCTTAAAGTATACAAGACAATCCATTCTTTTGAGTAATTTAT-
632 AGCTCTTTTATAACTTCT-GTTCC-TAAAGTATTCAAGACGATCCATTCCTTTGAGCAGTTT-TC
** * * * * *
22579909 TGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACA
694 TGAACATTCCATTATCGAGAAGTCGCATCATTTTGTCTAAATAGTTTGACATTTTGTAAACAACC
** * * * * * * * *
22579974 TTTTCTCTTCGAATTAAACACTTATTCACATGAGAATTCTTTCTCTCTTGGTTATTGGAAGAACT
759 TTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACT
** * *
22580039 TCCGAACTTGTAAAAC-TTTACGAGCT-C
822 TTTGAACTTGTCAAACTTTTACGAGTTCC
* * * * * *
22580066 TTTCGTAATTTCTG-TTCC-TAAAGTATTCAAGACGATTCATTCGTTTGAGCAGTTTTCTGAACA
1 TTT-ATAACTTC-GATTCCTTAAAGTATTCAAGATGATCCATTC-TTCGAGCAATTTTCTGAACA
* * * * * * * * * **
22580129 TTCCATTATCGAGAAGTCGCATCATTTTGTCTAAATAGTTTGACATTTTGTAAACAACCTTTGGT
63 TTACATTCTTGGGAAATCACATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGGT
* * * **
22580194 CTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCATGGTTCTTGGATGAACTTTTAAACT
128 CTTTGAATAAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCGAACT
* * * *
22580259 TGTCAAACTTTTACGAGTTCCTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCTATTGC-
193 TGTCTAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTC-A-ACGATCCATT-CA
* * ** * * * * * *
22580323 TTC-GAGCAATTTTCTAAACATTACATTCTCGGGAAATTGCATCATTTCGTCTAAATAGATTGTC
255 TTCAG-GCAATTCTCTAAACATTCCAAGCTCGAGAAATCGTATAATTTGGTCTAAATAGTTTGTC
* * *
22580387 ATTTTGTAAACAAATTTTTGGTA-TTTGAATTAAACACTTATTTACGTGAAAATTGTTTCTCTTA
319 ATTTTGTAAAC-AAGTTTTGG-ACTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTT-
* * * * * *
22580451 TGGTTCTTGGATGAACATCCGAAAA--TGTAAAACTTTTTAGAGTTCTTTCATAACTTCGGTTCC
380 T-GCTCTTGGACGAA-GTTC-AAAACTTGTAAAAC-TTTTCGAGTTCTTTTATAACTTCGGTTCC
* * * ** * * *
22580514 TTAAAGTATTCAAGACGATCCATGCCTTCAAGTAATTT-TCCAAACATTGCTTGCTTGGGAAATC
441 TTAAAGTATTCAAGACAATCCATTCCTTCGAGTAATTTAT-TGAACATTCCATGCTCGGGAAATC
* * * * * * *
22580578 GCATTATTTGGTCTAAACAGATTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTACAA-ACTT
505 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTCGAATTA-AACACTT
* * * * * * *
22580642 ATTTACATGAGAATTGTTTCTCTCTTTGTTCTTGGATGAAATTTCAAACTG-------TTACGAG
569 ATTCACGTGAGAATTGTTTCTCTCTTGGTTATTGGAAGAACTTCCAAACTGTAAAACTTTACGAG
* * * * * * * *
22580700 TTCTTTTATAACTTC-GATTCCT-TAGTATTCAAGATGAACCTTTCCTTCGAGCAATTTT-TCAA
634 CTCTTTTATAACTTCTG-TTCCTAAAGTATTCAAGACGATCCATTCCTTTGAGCAGTTTTCT-GA
* ** * * * * * *
22580762 ACATTCTATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTT
697 ACATTCCATTATCGAGAAGTCGCATCATTTTGTCTAAATAGTTTGACATTTTGTAAACAACCTTT
* * * * * * **
22580827 GGTGTTTGAATTAAATACTTATTTCCGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
762 GGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTT
* *
22580892 AAACTTGT-AATAC-TTTACGAGTTCT
825 GAACTTGTCAA-ACTTTTACGAGTTCC
* * * * * * *
22580917 TTTATAACTTTGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCTAGCGATTTTTTGAACATT
1 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATT-CTTCGAGCAATTTTCTGAACATT
* * *
22580982 CCATTCTTGGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
65 ACATTCTTGGGAAATCACATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGGTCT
** * *
22581047 TCAAATAAAAAACTTATTTACGTGAGAGTTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTG
130 TTGAATAAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTG
* * * * * * *
22581112 TCAAACTTTTAGGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATACAAGACGATCCACTCCTT-
195 TCTAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTC-A-ACGATCCATTCATTC
* * * * * * * *
22581176 TGAGCAATTTTCTGAACATTCCATGCTCTAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATT
258 AG-GCAATTCTCTAAACATTCCAAGCTCGAGAAATCGTATAATTTGGTCTAAATAGTTTGTCATT
* * * * *
22581241 TTGTAAACAACTTTT-GATTTTTGAA-ATAAAACTTATTTATGTGAGAATTTTTTCTCTCTTGGT
322 TTGTAAACAAGTTTTGGA-CTTTGAATA-AAAACTTATTTACGTGAGAATTGTTTCTCT-TT-GC
* ** ** * * * * * *
22581304 TCTTGGACAAACATCCGACCATGTAAAACTTTTTTGAGTTATTTCATAACTTCGATTCCTTAAAG
383 TCTTGGACGAAGTTCAAAACTTGTAAAAC-TTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * * ** * * * * * *
22581369 TATTCAAGGCAATCCATGCCTTCGAGCAATTT-TCCAAACATTCCTTTCTTGGGAAATCACGTGA
447 TATTCAAGACAATCCATTCCTTCGAGTAATTTAT-TGAACATTCCATGCTCGGGAAATCGCATCA
* * * * *
22581433 TTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTACAA-ACTTATT---
511 TTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTCGAATTA-AACACTTATTCAC
* * *
22581494 -T----A----------C---G----T-G-AGAA-TTAC-AAC--T-----TTTATGTGCTCTTT
575 GTGAGAATTGTTTCTCTCTTGGTTATTGGAAGAACTTCCAAACTGTAAAACTTTACGAGCTCTTT
* * * * *
22581526 TATAATTTATGTTCTTTAAAGTATTCATGACGATCCATTCCTTTGAGCAATTTTCTGAACATTCC
640 TATAACTTCTGTTC-CTAAAGTATTCAAGACGATCCATTCCTTTGAGCAGTTTTCTGAACATTCC
* * * * * * * *
22581591 GTTATTGGGAAGTCGCATCATTTTGTGTAAATAGATTGTCATTTTGTAAAGAACTTTTGGTCTTT
704 ATTATCGAGAAGTCGCATCATTTTGTCTAAATAGTTTGACATTTTGTAAACAACCTTTGGTCTTT
* * * * *
22581656 GAATAAAAAACTTACTTACGTGAGAATTGTGTCTCTTGGTTCTTAGACGAA-TTTCAGAACTTGT
769 GAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTT-TGAACTTGT
* ** *
22581720 CCAACTTTTGTGAGTTCT
833 CAAACTTTTACGAGTTCC
* * * * * *
22581738 TTTATAACTTTGATTCCTTAAAGTATTGAA-TTCGATCCATTCATTCGATCAATTCTC-GAAACT
1 TTTATAACTTCGATTCCTTAAAGTATTCAAGAT-GATCCATTC-TTCGAGCAATTTTCTG-AACA
* ** * * * * ** * *
22581801 TTCCAAGCTTGGGAAATCATATAATTTGGTCCAAATAG-TTCATTTTTTTGTAAAAAACTTTTGG
63 TTACATTCTTGGGAAATCACATCATTTGGTCTAAATAGATT-GTCATTTTGTAAACAAGTTTTGG
* *
22581865 TCTTTGAATTAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGA
127 TCTTTGAATAAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCGA
* ** * *
22581930 ACTAGTAAAAC-TTTACGAGTTCTTTTATAACTTCGATTCCTTATAGTAATTGAGACGATCCATT
190 ACTTGTCTAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGT-ATTCA-ACGATCCATT
* * * ** ** * * * *
22581994 CCTT-TGAGCAATTTTCCGAACATTCCATTCTC-AGATAATCGCATGATTTGGCCGAAATAGTTT
253 CATTCAG-GCAATTCTCTAAACATTCCAAGCTCGAGA-AATCGTATAATTTGGTCTAAATAGTTT
* * * *
22582057 GTCATTTTGTTAAACAAGTTTTGGTCTTTGAATAAAAACTTTTTTACATGAGAATTGTTTCTTTT
316 GTCATTTTG-TAAACAAGTTTTGGACTTTGAATAAAAACTTATTTACGTGAGAATTGTTTCTCTT
* *
22582122 TGCTCTTGGACG-AGCTTCAAAACTTATCAAACTTTTCTGAGTTCTTTTATAACTTCGGTTCCTT
380 TGCTCTTGGACGAAG-TTCAAAACTTGTAAAACTTTTC-GAGTTCTTTTATAACTTCGGTTCCTT
22582186 AAAGTATTCAAGACAATCCATTCCTTCGAGTAATTTATTGAACATTCCATGCTCGGGAAATCGCA
443 AAAGTATTCAAGACAATCCATTCCTTCGAGTAATTTATTGAACATTCCATGCTCGGGAAATCGCA
* *
22582251 TCATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAACTGTTGGTCTTCGAATTAAACACTTATTC
508 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTCGAATTAAACACTTATTC
22582316 ACGTGAGAATTGTTTCTCTCTTGGTTATTGGAAGAACTTCCAAACTAGTAAAACTTTACGAGCTC
573 ACGTGAGAATTGTTTCTCTCTTGGTTATTGGAAGAACTTCCAAACT-GTAAAACTTTACGAGCTC
*
22582381 TTTTATAATTTCTGTTCCTAAAGTATTCAAGACGATCCATTCCTTTGAGCAGTTTTCTGAACATT
637 TTTTATAACTTCTGTTCCTAAAGTATTCAAGACGATCCATTCCTTTGAGCAGTTTTCTGAACATT
22582446 CCATTATCGAGAAGTCGCATCATTTTGTCTAAATAGTTTGACATTTTGTAAACAACCTTTGGTCT
702 CCATTATCGAGAAGTCGCATCATTTTGTCTAAATAGTTTGACATTTTGTAAACAACCTTTGGTCT
* * *
22582511 TTGAATCAAAACCTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGATGAACTTTTGAACTTG
767 TTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTTGAACTTG
*
22582576 TCAAACTTTTACAAGTTCC
832 TCAAACTTTTACGAGTTCC
* * ** *
22582595 TTTATAACTTCGGTTCCATAAAGTATTCAAGATGATCTGTTGCTTCGCGCAATTTTCTGAACATT
1 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATT-CTTCGAGCAATTTTCTGAACATT
**
22582660 ACATTCTCAGGAAATCACATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGGTCT
65 ACATTCTTGGGAAATCACATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGGTCT
* *
22582725 TTGAATAAAAAACTTATTTACCTGAGAATTGTTTCTCTTGGATCTT-GACGAAC-TTCAGAACTT
130 TTGAATAAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTC-GAACTT
*
22582788 GTCTAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAATTTGATCCATTCATT
194 GTCTAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAA--CGATCCATTCATT
22582853 CAGGCAATTCTCTAAACATTCCAAGCTCGAGAAATCGTATAATTTGGTCTAAATAGTTTGTCATT
257 CAGGCAATTCTCTAAACATTCCAAGCTCGAGAAATCGTATAATTTGGTCTAAATAGTTTGTCATT
*
22582918 TTGTAAACAAGTTTTGGACTTTGAATAAAAAACTTGTTTACGTGAGAATTGTTTCTCTTTGCTCT
322 TTGTAAACAAGTTTTGGACTTTGAAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTTTGCTCT
* * *
22582983 TGGACGAAGTTCAAAACTTGTAAAAATTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAATTAT
386 TGGACGAAGTTCAAAACTTGTAAAACTTTT-CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
22583048 TCAAGACAATCCATTCCTTCGAGTAATTTATTGAACATTCCATGCTCGGGAAATCGCATCATTTG
450 TCAAGACAATCCATTCCTTCGAGTAATTTATTGAACATTCCATGCTCGGGAAATCGCATCATTTG
* *
22583113 GTCTAAATAGTTTTTCATTTTATAAAAAACTTTTGGTCTTCGAATTAAACACTTATTCACGTGAG
515 GTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTCGAATTAAACACTTATTCACGTGAG
* * *
22583178 TATTGTTTCTCTCTTGGTTATTGGAAGATCTTCCGAACTTGTAAAACTTTACGAGCTCTTTTATA
580 AATTGTTTCTCTCTTGGTTATTGGAAGAACTTCCAAAC-TGTAAAACTTTACGAGCTCTTTTATA
* * **
22583243 ACTTCTATTCCTAAAGTATTCAAGACGATCCATTCCTTCGAGCAGTTTTCTGAACATTGTATTAT
644 ACTTCTGTTCCTAAAGTATTCAAGACGATCCATTCCTTTGAGCAGTTTTCTGAACATTCCATTAT
* * *
22583308 CGGGAATTTGCATCATTTTGTCTAAATAGTTT-ATCATTTTGTAAACAACCTTTGGTCTTTGAAT
709 CGAGAAGTCGCATCATTTTGTCTAAATAGTTTGA-CATTTTGTAAACAACCTTTGGTCTTTGAAT
* *
22583372 CAAAAACTTATTTACGTGAGAGTTGTTTCTCTTGGTTCTTGGACAAACTTTTGAACTTGTCAAAC
773 CAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAAC
22583437 TTTTACGAGTTCC
838 TTTTACGAGTTCC
*
22583450 TTTATAACTTCGACTCCTTAAAGTATTCAAGATGATCCATTACTTCGAGCAATTTTCTGAACATT
1 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATT-CTTCGAGCAATTTTCTGAACATT
*
22583515 ACATTCTTGGGAAATCACATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGGTTT
65 ACATTCTTGGGAAATCACATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGGTCT
* *
22583580 TTAAATAAAAAACTTATTTACGTGAGAGTTGTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTG
130 TTGAATAAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTG
* *
22583645 TCTAACTTTTATGAGTACTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCATTC
195 TCTAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTC-A-ACGATCCATTCATTC
* * * **
22583710 AAGCAATTCTCTAAACATTCCAAGCTCGGGAAATCGTATCATTTGGTCTGTATAGTTTGTCATTT
258 AGGCAATTCTCTAAACATTCCAAGCTCGAGAAATCGTATAATTTGGTCTAAATAGTTTGTCATTT
* * * * * *
22583775 TGTAAAAAACTTTTGGTA-TTTGAATTAAACACTTATTTATGTGAAAATTGTTTCTCTCTTGGTT
323 TGTAAACAAGTTTTGG-ACTTTGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCT-TT-GCT
* ** ** * *
22583839 CTTAGACGAACATCCGAA-TATGTAAAACTTTTTCGAGTTCTTTCATAACTTCGGTTCGTTAAAG
384 CTTGGACGAAGTTCAAAACT-TGTAAAAC-TTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * * * ** * * * *
22583903 TATTCAAGACGATCCATGCCTTCAAGCAATTT-TCCAAACATTGCTTGCTTGGGAAATCGCATTA
447 TATTCAAGACAATCCATTCCTTCGAGTAATTTAT-TGAACATTCCATGCTCGGGAAATCGCATCA
* * * * * *
22583967 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTACAA-GCTTATTTAC
511 TTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTCGAATTA-AACACTTATTCAC
* * * * * * *
22584031 ATGAGAATTGTATCTCT-TT-TTTCTTGGACGAACTTTCAAACTG-------TTACGAGTTCTTT
575 GTGAGAATTGTTTCTCTCTTGGTTATTGGAAGAACTTCCAAACTGTAAAACTTTACGAGCTCTTT
* * *
22584087 TATAACTTCGGTTCCT-TAGTATTCAAGACGATCCATTACTTTGAGC-GATTTTCTGAACATTCC
640 TATAACTTCTGTTCCTAAAGTATTCAAGACGATCCATTCCTTTGAGCAG-TTTTCTGAACATTCC
* *
22584150 ATTGTCGAGAAGTCGCATGATTTTGTCTAAATAGTTTGACATTTTGTAAACAACCTTTGGTCTTT
704 ATTATCGAGAAGTCGCATCATTTTGTCTAAATAGTTTGACATTTTGTAAACAACCTTTGGTCTTT
* * * *
22584215 GAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCTGAACTTG
769 GAATCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTTGAACTTG
22584280 T-AAAC
832 TCAAAC
22584285 AACTTTTAGG
Statistics
Matches: 3599, Mismatches: 491, Indels: 268
0.83 0.11 0.06
Matches are distributed among these distances:
819 1 0.00
820 62 0.02
821 294 0.08
822 227 0.06
823 81 0.02
824 3 0.00
825 1 0.00
828 1 0.00
829 1 0.00
831 1 0.00
839 1 0.00
841 1 0.00
842 1 0.00
845 1 0.00
846 2 0.00
847 126 0.04
848 40 0.01
849 234 0.07
850 184 0.05
851 272 0.08
852 25 0.01
853 5 0.00
854 44 0.01
855 741 0.21
856 205 0.06
857 465 0.13
858 381 0.11
859 170 0.05
860 10 0.00
861 18 0.01
862 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (850 bp):
TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCTTCGAGCAATTTTCTGAACATTA
CATTCTTGGGAAATCACATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTGGTCTT
TGAATAAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
CTAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAACGATCCATTCATTCAGG
CAATTCTCTAAACATTCCAAGCTCGAGAAATCGTATAATTTGGTCTAAATAGTTTGTCATTTTGT
AAACAAGTTTTGGACTTTGAATAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGCTCTTGGAC
GAAGTTCAAAACTTGTAAAACTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
CAATCCATTCCTTCGAGTAATTTATTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
ATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTCGAATTAAACACTTATTCACGTGAGAATTGT
TTCTCTCTTGGTTATTGGAAGAACTTCCAAACTGTAAAACTTTACGAGCTCTTTTATAACTTCTG
TTCCTAAAGTATTCAAGACGATCCATTCCTTTGAGCAGTTTTCTGAACATTCCATTATCGAGAAG
TCGCATCATTTTGTCTAAATAGTTTGACATTTTGTAAACAACCTTTGGTCTTTGAATCAAAAACT
TATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTTACGA
GTTCC
Found at i:22584321 original size:15 final size:15
Alignment explanation
Indices: 22584296--22584337 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
22584286 ACTTTTAGGT
*
22584296 CCAGTGTTCGCAACA
1 CCAGTGCTCGCAACA
**
22584311 TGAGTGCTCGCAACA
1 CCAGTGCTCGCAACA
22584326 CCAGTGCTCGCA
1 CCAGTGCTCGCA
22584338 TCTTCCAAGC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.24, C:0.33, G:0.24, T:0.19
Consensus pattern (15 bp):
CCAGTGCTCGCAACA
Found at i:22584787 original size:214 final size:212
Alignment explanation
Indices: 22584401--22584914 Score: 746
Period size: 214 Copynumber: 2.4 Consensus size: 212
22584391 GCTTGCATCA
* * * * *
22584401 CTTGGTTCTTTGATGAACTTCCGAACTTGTCAAACTTTTATGACTTCTTTTATAACTTTGGTTTC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * *
22584466 TTAGAGTATTCAAGACGATCCATTCCTTCGAGCAATTTAACATTCCATACTTGGGAAATCGCATC
66 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTAACATTCCATACTCGAGAAATCGAATC
22584531 ATTTGGTCTAAATATTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTTAACACTTATTTAC
131 ATTTGGTCTAAATATTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTTAACACTTATTTAC
22584596 GTGAGAATTGTTTCTCT
196 GTGAGAATTGTTTCTCT
* * *
22584613 CTTGCTTCTTGGACGAACTTCTGAACTTGTAAAAC-TTTACGAGTTCTTTTATAACTTTGGTTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * *
22584677 TTAAAGTATTCAAGATGATTCATTCC-TCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCG
66 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA--TTT--AACATTCCATACTCGAGAAATCG
* *
22584741 AATCATTTGGTCTAAATAGTTTT-TCATTTTGTAAACAACTTTTGGTCTTTGAATTTCACACTTA
127 AATCATTTGGTCTAAATA-TTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTTAACACTTA
22584805 TTTACGTGAGAATTGTTTCTCT
191 TTTACGTGAGAATTGTTTCTCT
* * * * *
22584827 CTTGGTTCATGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATGACTTCGATTGC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* *
22584892 TTAACGTATTTAAGACGATCCAT
66 TTAAAGTATTCAAGACGATCCAT
22584915 GATGTAAGCA
Statistics
Matches: 267, Mismatches: 29, Indels: 9
0.88 0.10 0.03
Matches are distributed among these distances:
210 8 0.03
211 49 0.18
212 33 0.12
214 129 0.48
215 48 0.18
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (212 bp):
CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTAACATTCCATACTCGAGAAATCGAATC
ATTTGGTCTAAATATTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTTAACACTTATTTAC
GTGAGAATTGTTTCTCT
Found at i:22585288 original size:48 final size:48
Alignment explanation
Indices: 22585236--22585365 Score: 224
Period size: 48 Copynumber: 2.7 Consensus size: 48
22585226 TATTTATGCT
22585236 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
*
22585284 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
* * *
22585332 TTATTAAATGTTTTGTTTGTTAAATACATCTTTG
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTG
22585366 ATAAATGCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.25, C:0.09, G:0.15, T:0.52
Consensus pattern (48 bp):
TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
Found at i:22585380 original size:48 final size:46
Alignment explanation
Indices: 22585238--22585382 Score: 168
Period size: 48 Copynumber: 3.0 Consensus size: 46
22585228 TTTATGCTTC
*
22585238 ATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATC-TGCATC
1 ATTAAGTGTTTTGTTTGTTAAATGCATCTTTG-TT-A-AATCTTGCATT
22585286 ATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATC-TGCATT
1 ATTAAGTGTTTTGTTTGTTAAATGCATCTTTG-TTA--AATCTTGCATT
* * *
22585334 ATTAAATGTTTTGTTTGTTAAATACATCTTTGATAAATGCCTTGCATT
1 ATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTAAAT--CTTGCATT
22585382 A
1 A
22585383 ATCAGCATCT
Statistics
Matches: 89, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
45 3 0.03
47 4 0.04
48 82 0.92
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (46 bp):
ATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTAAATCTTGCATT
Found at i:22589840 original size:216 final size:215
Alignment explanation
Indices: 22589462--22595808 Score: 6973
Period size: 216 Copynumber: 29.6 Consensus size: 215
22589452 ACAAGCATTC
* * * *
22589462 AATTGTTTCTCTCTTTGTTCTTTGACGAACTTCCAAACTTGTCAAACTTTTACGAGATC-TTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * *
22589526 AACTTCGGTTTCTTAGAGTATTCAAGTCGATCCATTCTTTCGAGCAATTTTTCTAACATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATG
* * *
22589591 CTCAGGAAATAC-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTTGA
130 CTCGGGAAAT-CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
*
22589655 ATTAAATACTTATTGACGTGAG
194 ATTAAATACTTATTTACGTGAG
* * * * * * *
22589677 AATTATTTCTCTTTTGGTTATTGGATGAACTTCTGAACTTGTTAAACTTTTACGAGCTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22589742 AATTTTGGTTCCATAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTAGAACATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATG
* * * * * * *
22589807 CTCGGGAAATCGCATCATTTGGTTTAAATAGTTTGTCATTTTTTAAAAAACTTCTGTTGTTTGAA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
*
22589872 TTAAAAACTTATTTACGTGAG
195 TTAAATACTTATTTACGTGAG
* * *
22589893 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTCGTCAAACTTTTACGAGTTCTTTGAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * * * *
22589958 AACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCTATTTTCTGAATATTTCGTT
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATG
** * * * *
22590023 CTATGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCA-TTTGGAAACAAGTTTTTGTCTTTGAA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* **
22590087 TCATAA-ACTTATTTTTGTGAG
195 TTA-AATACTTATTTACGTGAG
* * * * *
22590108 AATT-ATT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACATTTACAAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* ** * * * * *
22590171 AACTTCGATTCCTTATCGTATTCAAGACGATACATTCCTTCAAGCAACTTTCTAAACATTCTATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATG
** * * * *
22590236 CTCGAAAAATCGCATCCTTT-TTCTAAATTGTTTGTCCTTTTGTAAACAAGTTTTGGTCTTTGAA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* *
22590300 TTACATACTTATTTATGTGAG
195 TTAAATACTTATTTACGTGAG
* * * * *
22590321 AATTGTTTCTCTCTTAGTTCTTTGAAGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTCAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
*
22590386 AACTTTGGTTCCTTAAAG-AGTTCAAGACGATCCATTCCTTCGAGCAATTTTTGAAACATTCCAT
66 AACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCGAGCAATTTTTG-AACATTCCAT
* * * * *
22590450 TCTTGGGAAATAGCGA-CATTTGGTCTAAATAGTTCT-TCATTTTGGAAACAAGCTTTGGTCTTT
129 GCTCGGGAAATCGC-ATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAAGTTTTGGTCTTT
*
22590513 GAA-TAAATAACTTATTTACATGAG
192 GAATTAAAT-ACTTATTTACGTGAG
* * * *
22590537 AATTG-TT-TCTCTTGGTTCTTGGACGACCTTTCAAACTTGTCAAACTTTTACGAGTTCTTTCAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * * *
22590600 AGCTTCGGTTCCTTACATTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAACATTACATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATG
* * * * *
22590665 ATCGGTAAAAT-GACATCATTTGGTATAAATAG--TGTCATTTTCTAAAAAAGTTTTGGTCTTTG
130 CTCGG-GAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
* *
22590727 GATTAAACACTTA-TTACGTGAG
193 AATTAAATACTTATTTACGTGAG
* * *
22590749 AATTGTTTCTCTCTTTGTTCTT---TG-A----CGAACTTGTCAAACTTTTACGAGATCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * *
22590806 AACTTCGGTTTCTTAGAGTATTCAAGTCGATCCATTCTTTCGAGCAATTTTTCTAACATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATG
* * *
22590871 CTCGGGAAATAC-AATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTTGA
130 CTCGGGAAAT-CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
*
22590935 ATTAAATACTTATTGACGTGAG
194 ATTAAATACTTATTTACGTGAG
* * * * ** * * *
22590957 AATTATTTCTCTTTTGGTTATTGGATGAACTTCTAAACCTGTTAAACTTTTACGAGCTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * *
22591022 AATTTCGGTTCCATAAAGTATACAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATG
* * * * *
22591087 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGTTGTTTGAA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
*
22591152 TTAAAAACTTATTTACGTGAG
195 TTAAATACTTATTTACGTGAG
* * * *
22591173 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTCGTCAAACTTTTACGAGTTCTTTCAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * * * * *
22591238 AACTTAGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCTATTTTCTGAATATTGCGTT
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATG
** * * *
22591303 CTATGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * *
22591368 TCATAA-ACTTATTTTCATGAG
195 TTA-AATACTTATTTACGTGAG
* * * *
22591389 AATT-ATT-TCTCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * ** * * * * *
22591452 AACTTTGATTCCTTATCGTATTCAAGACGATACATTCCTTCAAGCAACTTTCTAAACATTCTATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATG
** * * * *
22591517 CTCGAAAAATCGCATCCTTT-TTCTAAATTGTTTGTCCTTTTGTAAACAAGTTTTGGTCTTTGAA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* *
22591581 TTACATACTTATTTATGTGAG
195 TTAAATACTTATTTACGTGAG
* * * * *
22591602 AATTGTTTCTCTCTTAGTTCTTTGAAGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTCAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
*
22591667 AACTTTGGTTCCTTAAAG-AGTTCAAGACGATCCATTCCTTCGAGCAATTTTTGAAACATTCCAT
66 AACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCGAGCAATTTTTG-AACATTCCAT
* * * * *
22591731 TCTTGGGAAATAGCGA-CATTTGGTCTAAATAGTTCT-TCATTTTGGAAACAAGCTTTGGTCTTT
129 GCTCGGGAAATCGC-ATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAAGTTTTGGTCTTT
*
22591794 GCA-TAAATAACTTATTTACGTGAG
192 GAATTAAAT-ACTTATTTACGTGAG
* * *
22591818 AATTG-TT-TCTCTTGGTTCTTGGACGACCTTCCAAACTTGTCAAACTTTTACGAGTTCTTTCAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * * *
22591881 AGCTTCGGTTCCTTACATTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAACATTACATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATG
* * * *
22591946 ATCGGCAAAAT-GACATCATTTGGTATAAATAG--TGTCATTTTCTTAAA-AAGTTTTGGTCTTT
130 CTCGG-GAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTTTTGGTCTTT
* *
22592007 GGATTAAACACTTA-TTACGTGAG
192 GAATTAAATACTTATTTACGTGAG
* * * *
22592030 AATTGTTTCTCTCTTTGTTCTTTGACGAACTTCCAAACTTGTCAAACTTTTACGAGATCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22592095 AACTTCGGTTTCC-TAGAGTATTCAAGTCGATCCATTCTTTCGAGCAATTTTTCTAACATTCCAT
66 AACTTCGG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCAT
* * * * *
22592159 GCTCGGAAAATAC-CATCATTTGGTGTAAATAGTTTGTCATTTTGTAAATAACTTTTGGCCTTTG
129 GCTCGGGAAAT-CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
*
22592223 AATTAAATACTTATTGACGTGAG
193 AATTAAATACTTATTTACGTGAG
* * * * ** * *
22592246 AATTATTTCTCTTTTGGTTATTGGATGAACTTCTAAACTTGTTAAACTTTTACGAGCTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * *
22592311 AATTTTGGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATG
* * * * * * *
22592376 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAAAAACTTTTGTTGTATAAA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
*
22592441 TTAAAAACTTATTTACGTGAG
195 TTAAATACTTATTTACGTGAG
* * *
22592462 AATTGTTTCTCTCTTGGTTCTTGGAC-AGACTTTCGAACTCGTCAAACTTTTACGAGTTCTTTCA
1 AATTGTTTCTCTCTTGGTTCTTGGACGA-ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
* * * * * *
22592526 TAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCAAGCTATTTTCTGAATATTCCGT
65 TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCAT
* ** * * *
22592591 TCTATGGAAATAGCAACATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGA
129 GCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* **
22592656 ATCATAA-ACTTATTTTTGTGAG
194 ATTA-AATACTTATTTACGTGAG
* * *
22592678 AATT-ATT-TCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* ** * * * * * *
22592741 AACTTCGATTCCTT-ATCTATTCAAGACGATACATTGCTTCCAGCAACTTTCTAAACATTCTATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATG
** * * *
22592805 CTCGAAAAATCGCATCCTTT-TTCTAAATTGTTTGTCCA-TTTGTAAACAAGTTTTGGTCTTTGA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTTGGTCTTTGA
22592868 ATTAAATACTTATTTACGTGAG
194 ATTAAATACTTATTTACGTGAG
* *
22592890 AATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22592955 AACTTCAGTTCCTTAAAGTATTCAAGACAATCCATTCCATT-GAGCAATTTTTGAACATCCCATT
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTTTGAACATTCCATG
* * * * *
22593019 CTTGGGAAATCGCATTATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT-GA
* *
22593084 ATGAAA-ACTTATTTACATGAG
194 ATTAAATACTTATTTACGTGAG
* * * * *
22593105 AATT-TTT-TCTTTTGGCTCTTGGATGAACTTCCGAACTTTTCAAACTTTTACAAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* ** * *
22593168 AACTT-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTCCCGAGCATTCCTTG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-TTGAACATTCCATG
* *
22593232 CTCGGGAAATCGCATCATTTGCTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
*
22593297 TTAAACACTTATTTACGTGAG
195 TTAAATACTTATTTACGTGAG
* * * * * * * *
22593318 GATT-CTTCTCCCTTAGTTCTTTGACGAACTTCCGAACTTATCAAGCTTTTACGAGTTC-TTTAC
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22593381 AACTTCGGTTCCTTAAAGTATTCAAGACAATCCACTCTTTCGAGCAATTTTTTGAACATTCCATA
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATG
* * * * * *
22593446 TTCAGGAAATCGCATCGTTTGGTATGAATAGTTTGTCATTTTGTAAACAAGCTTTT-GCCTTTGA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTGA
* * *
22593510 TTTAAAAGAACATT-TTTACATGAG
194 ATT-AAA-TAC-TTATTTACGTGAG
* ** * *
22593534 AATTG-TT-TCTCTTGGTTCTTAGACGAACTTTTGAACTTGTCAAAATTTTACAAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * * * *
22593597 AACTTCTGTTCCTTACAGTATTCAAGACGATACATTCTTTCGAGCAA-CTTTGTAAAAGTTCTAT
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTG-AACA-TTCCAT
** * * *
22593661 GCTCGAAAAATCGCATCATTT-TTCTAATTTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
129 GCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
*
22593725 ATTAAATACTTATTTACGTGAA
194 ATTAAATACTTATTTACGTGAG
* * * * * *
22593747 AATTGTTTCTCTTTTGGTTCTTAGACGATCTTCCGAAGTTGTCAAACTGTCACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22593812 AATTTCAGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAATATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATG
* * * * * * ** * *
22593877 CTCGAGAAATCTCATTATTCGGTCTAAATACTTTGTCATTTTGTAAAAAAAAAATTTGTTGTTTG
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT--AAACAAGTTTTGGTCTTTG
*
22593942 AATTAAAAACTTATTTACGTGAG
193 AATTAAATACTTATTTACGTGAG
* * * * *
22593965 AATTGTTTCTCTCTTGGTTCATGGAAGAACTTTCGAACTTATCAAACTTTT-CTGAGTTCTTTCA
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC-GAGTTCTTTTA
*
22594029 TAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-AATCATTCCA
65 TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAA-CATTCCA
* * ** * *
22594093 TTCAT-GGGAAATAGCGGCATTTGGTCTAAATAGTTCT-TCTTTTTGGAAACAAGTTTTGGTCTT
128 TGC-TCGGGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
22594156 TGAATAAAAAACTTATTTCCATGAG
191 TGAATTAAATACTTATTTACGTGAG
* * *
22594181 AATTG-TT-TCTCTTGGTTCTTGGACGACCTTCCAAACTTGTCAAACTTTTACGAGTTCTTTCAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * *
22594244 AACTTCGGTTCCTTACATTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAACATTACATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATG
* * * * * * *
22594309 ATCGGGATAT-GAAATCATTTGGTATAAATAG--TGTCATTTTCTAAAGAAGTTTTGGTCTTTGG
130 CTCGGGAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
*
22594371 ATTAAACACTTA-TTACGTGAG
194 ATTAAATACTTATTTACGTGAG
* * * * *
22594392 AATTGTTTCTCTCTTTGTTCTTTGACGAACTTCCAAACTTGTCAAAATTTTACGAGATCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22594457 AACTTCGGTTTCTTAGAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCTAACATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATG
*
22594522 CTCGGGAAATAC-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
130 CTCGGGAAAT-CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
*
22594586 ATTAAATACTTATTTGCGTGAG
194 ATTAAATACTTATTTACGTGAG
* * * * * * *
22594608 AGTTGTTTCTCTTTTGGTTATTGGATGAACTTCTGAACTTGTTAAAATTTTACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* *
22594673 AATTTCGGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATG
* * * * *
22594738 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGTTGTTTGAA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
*
22594803 TTAAAAACTTATTTACGTGAG
195 TTAAATACTTATTTACGTGAG
* * *
22594824 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-AAATTGGTCAAACTTTTACGAGTTCTTTCA
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT-GTCAAACTTTTACGAGTTCTTTTA
* * * * *
22594888 TAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCTATTTTCTGAATATTCCGT
65 TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCAT
* ** * * * *
22594953 TCTATGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAATAAGTTTTGGTCTTTGA
129 GCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* *
22595018 ATCATAA-ACTTATTTTCGTGAG
194 ATTA-AATACTTATTTACGTGAG
* * * *
22595040 AATT-ATT-TCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * ** * * * * *
22595103 AACTTTGATTCCTTATCGTATTCAAGACGATACATTCCTTCGAGCAACTATCTAAACATTCTATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATG
** * * * * *
22595168 CTCGAAAAATCGCATCCTTT-TTCTAAATTGTTTTTTC-TTTTGTATACAAGTTTTGGTCTTTGA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
*
22595231 ATTAAACACTTATTTACGTGAG
194 ATTAAATACTTATTTACGTGAG
* * *
22595253 AATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTATGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * *
22595318 AACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTTCATT-GAGCAAGTTTTGAACATCCCATT
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAATTTTTGAACATTCCATG
* * * * * * *
22595382 CTTGGGAAATAGAATCATTTAGTCTAAATAGTTTTTCATTTTATAAACAAGTTTTGGTCTTTAAA
130 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT-GA
*
22595447 ATGAAA-ACTTATTTACGTGAG
194 ATTAAATACTTATTTACGTGAG
* * * * * * *
22595468 AATTG-TT-TCTCTTGGCTCTTGGATGAACTTCCAAACTTTTTAAACTTTTACTAGTTTTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22595531 AACTT-GGTTCCTTACAGTTTTCAAGACGATCCATT-CTCTAGAGCAATATTCTGAACATTCCAT
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAAT-TTTTGAACATTCCAT
* * * * * *
22595594 GCTCAGGAAATAGCATCATTTGCTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTATTTGA
129 GCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* * *
22595659 TTTAAACACTTATTTACATGAG
194 ATTAAATACTTATTTACGTGAG
* * * * * * *
22595681 GATTG-TTCTCCCTTGGTTCTTTGACGAACGTCCGAACTTGTCAAACTTTTACAACTTCTTTTAC
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * *
22595745 AACTTCGGTTCCTTAAAGTATTCAACACAATCCACTCATTCGAGCAATTTTCCGAACATTCCAT
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCAT
22595809 ATGATGCGAG
Statistics
Matches: 5125, Mismatches: 858, Indels: 298
0.82 0.14 0.05
Matches are distributed among these distances:
205 22 0.00
206 87 0.02
207 37 0.01
208 26 0.01
210 1 0.00
211 23 0.00
212 224 0.04
213 831 0.16
214 1114 0.22
215 925 0.18
216 1636 0.32
217 29 0.01
218 168 0.03
219 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGC
TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
TAAATACTTATTTACGTGAG
Found at i:22590654 original size:429 final size:429
Alignment explanation
Indices: 22589462--22595808 Score: 6881
Period size: 429 Copynumber: 14.8 Consensus size: 429
22589452 ACAAGCATTC
* * * *
22589462 AATTGTTTCTCTCTTTGTTCTTTGACGAACTTCCAAACTTGTCAAACTTTTACGAGATC-TTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * *
22589526 AACTTCGGTTTCTTAGAGTATTCAAGTCGATCCATTCTTTCGAGCAATTTTTCTAACATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATG
* * *
22589591 CTCAGGAAATACCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGCCTTTGA
130 CTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGC-TTTGGTCTTTGA
* * * * *
22589655 ATTAAAT-ACTTATTGACGTGAGAATTATTTCTCTTTTGGTTATTGGATGAAC-TTCTGAACTTG
194 A-TAAATAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAACTTTC-AAACTTG
* * * * * *
22589718 TTAAACTTTTACGAGCTCTTTTATAATTTTGGTTCCATAAAGTATTCAAGACGATCCATTCTTTC
255 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* *
22589783 GAGCAATTTT-TAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTTTAAATAGTTTGTCATT
320 GAGCAATTTTCTA-AACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * * * *
22589847 TTTTAAAAAACTTCTGTTGTTTGAATTAAAAACTTATTTACGTGAG
384 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * *
22589893 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTCGTCAAACTTTTACGAGTTCTTTGAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * * * *
22589958 AACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCTATTTTCTGAATATTTCGTT
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATG
** * * * *
22590023 CTATGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCA-TTTGGAAACAAGTTTTTGTCTTTGAA
130 CTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGCTTTGGTCTTTGAA
* ** * * *
22590087 T-CATAAACTTATTTTTGTGAGAATTATTTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAA
195 TAAAT-AACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
* * * ** * *
22590151 ACATTTACAAGTTCTTTTATAACTTCGATTCCTTATCGTATTCAAGACGATACATTCCTTCAAGC
259 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * *
22590216 AACTTTCTAAACATTCTATGCTCGAAAAATCGCATCCTTT-TTCTAAATTGTTTGTCCTTTTGTA
324 AATTTTCTAAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
22590280 AACAAGTTTTGGTCTTTGAATTACATACTTATTTATGTGAG
389 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * *
22590321 AATTGTTTCTCTCTTAGTTCTTTGAAGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTCAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
*
22590386 AACTTTGGTTCCTTAAAG-AGTTCAAGACGATCCATTCCTTCGAGCAATTTTTGAAACATTCCAT
66 AACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCGAGCAATTTTTG-AACATTCCAT
* * *
22590450 TCTTGGGAAATAGCGA-CATTTGGTCTAAATAGTTCT-TCATTTTGGAAACAAGCTTTGGTCTTT
129 GCTCGGGAAATAGC-ATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAAGCTTTGGTCTTT
* *
22590513 GAATAAATAACTTATTTACATGAGAATTGTTTCTCTTGGTTCTTGGACGACCTTTCAAACTTGTC
192 GAATAAATAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
* * * * *
22590578 AAACTTTTACGAGTTCTTTCATAGCTTCGGTTCCTTACATTATTCAAGATGATCCATTCCTTCGA
257 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * *
22590643 GCAATTTTCTAAACATTACATGATCGGTAAAAT-GACATCATTTGGTATAAATAG--TGTCATTT
322 GCAATTTTCTAAACATTCCATGCTCGG-AAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTT
* * * *
22590705 TCTAAAAAAGTTTTGGTCTTTGGATTAAACACTTA-TTACGTGAG
385 TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * *
22590749 AATTGTTTCTCTCTTTGTTCTT---TG-A----CGAACTTGTCAAACTTTTACGAGATCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * *
22590806 AACTTCGGTTTCTTAGAGTATTCAAGTCGATCCATTCTTTCGAGCAATTTTTCTAACATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATG
*
22590871 CTCGGGAAATA-CAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGCCTTTG
130 CTCGGGAAATAGC-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGC-TTTGGTCTTTG
* * * * *
22590934 AATTAAAT-ACTTATTGACGTGAGAATTATTTCTCTTTTGGTTATTGGATGAAC-TTCTAAACCT
193 AA-TAAATAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAACTTTC-AAACTT
* * * * *
22590997 GTTAAACTTTTACGAGCTCTTTTATAATTTCGGTTCCATAAAGTATACAAGACGATCCATTCCTT
254 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * *
22591062 CGAGCAATTTT-TCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCAT
319 CGAGCAATTTTCT-AAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* * * *
22591126 TTTGTAAAAAACTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAG
383 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * *
22591173 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTCGTCAAACTTTTACGAGTTCTTTCAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * * * * *
22591238 AACTTAGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCTATTTTCTGAATATTGCGTT
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATG
** * * *
22591303 CTATGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAA
130 CTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGCTTTGGTCTTTGAA
* * * * * *
22591368 T-CATAAACTTATTTTCATGAGAATTATTTCTCTTGGTTCTTGGATGAAC-TTCTGAACTTGTCA
195 TAAAT-AACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTC-AAACTTGTCA
* * * ** * *
22591431 AACATTTACGAGTTCTTTTATAACTTTGATTCCTTATCGTATTCAAGACGATACATTCCTTCAAG
258 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * * *
22591496 CAACTTTCTAAACATTCTATGCTCGAAAAATCGCATCCTTT-TTCTAAATTGTTTGTCCTTTTGT
323 CAATTTTCTAAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
22591560 AAACAAGTTTTGGTCTTTGAATTACATACTTATTTATGTGAG
388 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * *
22591602 AATTGTTTCTCTCTTAGTTCTTTGAAGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTCAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
*
22591667 AACTTTGGTTCCTTAAAG-AGTTCAAGACGATCCATTCCTTCGAGCAATTTTTGAAACATTCCAT
66 AACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCGAGCAATTTTTG-AACATTCCAT
* * *
22591731 TCTTGGGAAATAGCGA-CATTTGGTCTAAATAGTTCT-TCATTTTGGAAACAAGCTTTGGTCTTT
129 GCTCGGGAAATAGC-ATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAAGCTTTGGTCTTT
* * *
22591794 GCATAAATAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGACCTTCCAAACTTGTC
192 GAATAAATAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
* * * * *
22591859 AAACTTTTACGAGTTCTTTCATAGCTTCGGTTCCTTACATTATTCAAGATGATCCATTCCTTCGA
257 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * *
22591924 GCAATTTTCTAAACATTACATGATCGGCAAAAT-GACATCATTTGGTATAAATAG--TGTCATTT
322 GCAATTTTCTAAACATTCCATGCTCGG-AAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTT
* * *
22591986 TCTTAAA-AAGTTTTGGTCTTTGGATTAAACACTTA-TTACGTGAG
385 T-GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * *
22592030 AATTGTTTCTCTCTTTGTTCTTTGACGAACTTCCAAACTTGTCAAACTTTTACGAGATCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22592095 AACTTCGGTTTCC-TAGAGTATTCAAGTCGATCCATTCTTTCGAGCAATTTTTCTAACATTCCAT
66 AACTTCGG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCAT
* * * * *
22592159 GCTCGGAAAATACCATCATTTGGTGTAAATAGTTTGTCATTTTGTAAATAA-CTTTTGGCCTTTG
129 GCTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGC-TTTGGTCTTTG
* * * *
22592223 AATTAAAT-ACTTATTGACGTGAGAATTATTTCTCTTTTGGTTATTGGATGAAC-TTCTAAACTT
193 AA-TAAATAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAACTTTC-AAACTT
* * * * *
22592286 GTTAAACTTTTACGAGCTCTTTTATAATTTTGGTTCCATAAAGTATTCAAGACGATCCATTCCTT
254 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * *
22592351 CGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
319 CGAGCAATTTTCTAAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * * * * *
22592416 TTTTAAAAAACTTTTGTTGTATAAATTAAAAACTTATTTACGTGAG
384 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * *
22592462 AATTGTTTCTCTCTTGGTTCTTGGAC-AGACTTTCGAACTCGTCAAACTTTTACGAGTTCTTTCA
1 AATTGTTTCTCTCTTGGTTCTTGGACGA-ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
* * * * * *
22592526 TAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCAAGCTATTTTCTGAATATTCCGT
65 TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCAT
* ** * * *
22592591 TCTATGGAAATAGCAACATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGA
129 GCTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGCTTTGGTCTTTGA
* ** * * * *
22592656 AT-CATAAACTTATTTTTGTGAGAATTATTTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCA
194 ATAAAT-AACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCA
* * ** * * *
22592720 AACATTTACGAGTTCTTTTATAACTTCGATTCCTT-ATCTATTCAAGACGATACATTGCTTCCAG
258 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * *
22592784 CAACTTTCTAAACATTCTATGCTCGAAAAATCGCATCCTTT-TTCTAAATTGTTTGTCCA-TTTG
323 CAATTTTCTAAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTG
*
22592847 TAAACAAGTTTTGGTCTTTGAATTAAATACTTATTTACGTGAG
387 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* *
22592890 AATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22592955 AACTTCAGTTCCTTAAAGTATTCAAGACAATCCATTCCATT-GAGCAATTTTTGAACATCCCATT
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTTTGAACATTCCATG
* * * * * * *
22593019 CTTGGGAAATCGCATTATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAA
130 CTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGCTTTGGTCTTT-GA
* * * * * * * * *
22593084 ATGAA-AACTTATTTACATGAGAATTTTTTCTTTTGGCTCTTGGATGAACTTCCGAACTTTTCAA
194 ATAAATAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
* *
22593148 ACTTTTACAAGTTCTTTTATAACTT-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAAC
259 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* ** * * * *
22593212 AATTTCCCGAGCATTCCTTGCTCGGGAAATCGCATCATTTGCTCTAAATAGTTTGTCATTTTGTA
324 AATTTTCTAAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
22593277 AACAACTTTTGGTCTTTGAATTAAACACTTATTTACGTGAG
389 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * * * * *
22593318 GATT-CTTCTCCCTTAGTTCTTTGACGAACTTCCGAACTTATCAAGCTTTTACGAGTTC-TTTAC
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22593381 AACTTCGGTTCCTTAAAGTATTCAAGACAATCCACTCTTTCGAGCAATTTTTTGAACATTCCATA
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATG
* * * * * * * *
22593446 TTCAGGAAATCGCATCGTTTGGTATGAATAGTTTGTCATTTTGTAAACAAGCTTTTGCCTTTGAT
130 CTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGCTTTGGTCTTTGA-
* * * * **
22593511 TTAAAAGAACATT-TTTACATGAGAATTGTTTCTCTTGGTTCTTAGACGAACTTTTGAACTTGTC
194 AT-AAATAAC-TTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
* * * * * *
22593575 AAAATTTTACAAGTTCTTTTATAACTTCTGTTCCTTACAGTATTCAAGACGATACATTCTTTCGA
257 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * * *
22593640 GCAACTTTGTAAA-AGTTCTATGCTCGAAAAATCGCATCATTT-TTCTAATTTGTTTGTCATTTT
322 GCAATTTTCTAAACA-TTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
22593703 GTAAACAAGTTTTGGTCTTTGAATTAAATACTTATTTACGTGAA
386 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * * *
22593747 AATTGTTTCTCTTTTGGTTCTTAGACGATCTTCCGAAGTTGTCAAACTGTCACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22593812 AATTTCAGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAATATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATG
* ** * * * * ** * *
22593877 CTCGAGAAATCTCATTATTCGGTCTAAATACTTTGTCATTTTGTAAAAAAAAAATTTGTTGTTTG
130 CTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGT--AAACAAGCTTTGGTCTTTG
* * * *
22593942 AATTAAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCATGGAAGAACTTTCGAACTTA
193 AA-TAAATAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCAAACTTG
* *
22594006 TCAAACTTTT-CTGAGTTCTTTCATAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT
255 TCAAACTTTTAC-GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * * ** *
22594070 CGAGCAATTTTCTAATCATTCCATTCAT-GGGAAATAGCGGCATTTGGTCTAAATAGTTCT-TCT
319 CGAGCAATTTTCTAAACATTCCATGC-TCGGAAAATCGCATCATTTGGTCTAAATAGTT-TGTCA
* * * *
22594133 TTTTGGAAACAAGTTTTGGTCTTTGAATAAAAAACTTATTTCCATGAG
382 TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * *
22594181 AATTG-TT-TCTCTTGGTTCTTGGACGACCTTCCAAACTTGTCAAACTTTTACGAGTTCTTTCAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * *
22594244 AACTTCGGTTCCTTACATTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTAAACATTACATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATG
* * * * * * *
22594309 ATCGGGATAT-GAAATCATTTGGTATAAATAG--TGTCATTTTCTAAAGAAGTTTTGGTCTTTGG
130 CTCGGGAAATAG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGCTTTGGTCTTT-G
* * * * *
22594371 ATTAAA-CACTTA-TTACGTGAGAATTGTTTCTCTCTTTGTTCTTTGACGAACTTCCAAACTTGT
193 AATAAATAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCAAACTTGT
* * * * *
22594434 CAAAATTTTACGAGATCTTTTATAACTTCGGTTTCTTAGAGTATTCAAGACGATCCATTCTTTCG
256 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
*
22594499 AGCAATTTTTCT-AACATTCCATGCTCGGGAAATAC-CATCATTTGGTCTAAATAGTTTGTCATT
321 AGCAA-TTTTCTAAACATTCCATGCTCGGAAAAT-CGCATCATTTGGTCTAAATAGTTTGTCATT
* * *
22594562 TTGTAAACAACTTTTGGTCTTTGAATTAAATACTTATTTGCGTGAG
384 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * * * *
22594608 AGTTGTTTCTCTTTTGGTTATTGGATGAACTTCTGAACTTGTTAAAATTTTACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* *
22594673 AATTTCGGTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATG
* * * *
22594738 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAACTTTTGTTGTTTGA
130 CTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGC-TTTGGTCTTTGA
22594802 ATTAAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAA-TTGG
194 A-TAAATAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCAAACTT-G
* * *
22594865 TCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTC
255 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * * * *
22594930 GAGCTATTTTCTGAATATTCCGTTCTATGG-AAATAGCAGCATTTGGTCTAAATAGTTTGTCATT
320 GAGCAATTTTCTAAACATTCCATGCT-CGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * * *
22594994 TTGGAAATAAGTTTTGGTCTTTGAATCATAAACTTATTTTCGTGAG
384 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * *
22595040 AATT-ATT-TCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * ** * * * * *
22595103 AACTTTGATTCCTTATCGTATTCAAGACGATACATTCCTTCGAGCAACTATCTAAACATTCTATG
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATG
** * * * * * * *
22595168 CTCGAAAAATCGCATCCTTT-TTCTAAATTGTTTTTTC-TTTTGTATACAAGTTTTGGTCTTTGA
130 CTCGGGAAATAGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAAGCTTTGGTCTTTGA
* *
22595231 ATTAAA-CACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGT
194 A-TAAATAACTTATTTACGTGAGAATTGTTTCTCT-T-GGTTCTTGGACGAACTTTCAAACTTGT
* * *
22595295 CAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTTCATT-
256 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTC
* * * * * * * * * *
22595359 GAGCAAGTTT-TGAACATCCCATTCTTGGGAAATAGAATCATTTAGTCTAAATAGTTTTTCATTT
320 GAGCAATTTTCTAAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * *
22595423 TATAAACAAGTTTTGGTCTTTAAAATGAAAACTTATTTACGTGAG
385 TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * * * *
22595468 AATTG-TT-TCTCTTGGCTCTTGGATGAACTTCCAAACTTTTTAAACTTTTACTAGTTTTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
22595531 AACTT-GGTTCCTTACAGTTTTCAAGACGATCCATT-CTCTAGAGCAATATTCTGAACATTCCAT
66 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAAT-TTTTGAACATTCCAT
* * * *
22595594 GCTCAGGAAATAGCATCATTTGCTCTAAATAGATTGTCATTTTGTAAACAA-CTTTTGGTATTTG
129 GCTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGC-TTTGGTCTTTG
* * * * * * * * *
22595658 ATTTAAA-CACTTATTTACATGAGGATTGTTCTCCCTTGGTTCTTTGACGAACGTCCGAACTTGT
193 A-ATAAATAACTTATTTACGTGAGAATTGTT-TCTCTTGGTTCTTGGACGAACTTTCAAACTTGT
* * * * * * *
22595722 CAAACTTTTACAACTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAACACAATCCACTCATTCG
256 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
**
22595787 AGCAATTTTCCGAACATTCCAT
321 AGCAATTTTCTAAACATTCCAT
22595809 ATGATGCGAG
Statistics
Matches: 4980, Mismatches: 793, Indels: 289
0.82 0.13 0.05
Matches are distributed among these distances:
419 4 0.00
420 161 0.03
421 32 0.01
422 100 0.02
423 37 0.01
424 31 0.01
425 3 0.00
426 63 0.01
427 658 0.13
428 877 0.18
429 1188 0.24
430 572 0.11
431 309 0.06
432 750 0.15
433 134 0.03
434 60 0.01
435 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (429 bp):
AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGC
TCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGCTTTGGTCTTTGAAT
AAATAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
TTTTCTAAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
Found at i:22595743 original size:12 final size:12
Alignment explanation
Indices: 22595726--22595750 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22595716 ACTTGTCAAA
22595726 CTTTTACAACTT
1 CTTTTACAACTT
22595738 CTTTTACAACTT
1 CTTTTACAACTT
22595750 C
1 C
22595751 GGTTCCTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTTTACAACTT
Found at i:22603435 original size:6 final size:6
Alignment explanation
Indices: 22603426--22603467 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
22603416 TATCTTCTTG
* * *
22603426 TTTTTC TTTTTC TTTTTC TTCTTA TTTTTC ATTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
22603468 CTATTGAGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:22603453 original size:24 final size:24
Alignment explanation
Indices: 22603418--22603467 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
22603408 TGTATGGGTA
* *
22603418 TCTTCTTGTTTTTCTTTTTCTTTT
1 TCTTCTTATTTTTCATTTTCTTTT
22603442 TCTTCTTATTTTTCATTTTCTTTT
1 TCTTCTTATTTTTCATTTTCTTTT
22603466 TC
1 TC
22603468 CTATTGAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.76
Consensus pattern (24 bp):
TCTTCTTATTTTTCATTTTCTTTT
Found at i:22636905 original size:2 final size:2
Alignment explanation
Indices: 22636898--22636936 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
22636888 AAGAACAACG
22636898 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22636937 GAGAGAGAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:22641118 original size:17 final size:16
Alignment explanation
Indices: 22641095--22641136 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
22641085 AAAAGGGGTG
22641095 ATTTAAAAAAGATTAA
1 ATTTAAAAAAGATTAA
* * *
22641111 ATTTTAAAAGGATTTA
1 ATTTAAAAAAGATTAA
22641127 ATTTAAAAAA
1 ATTTAAAAAA
22641137 AATAATAAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (16 bp):
ATTTAAAAAAGATTAA
Found at i:22644485 original size:45 final size:44
Alignment explanation
Indices: 22644426--22644985 Score: 541
Period size: 42 Copynumber: 13.0 Consensus size: 44
22644416 AAGTTATGTG
* *
22644426 TGTGGCTTCAATCTGCCCCTCTGGATTAAGGGTAAAATATTGGA
1 TGTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
* *
22644470 TGTTGGTTTCAATCTGCCCCTCTGGATTTAGGGCTAAAAGATTGGA
1 TG-TGGCTTCAATCTGCCCCTCTGGA-TTAGGGGTAAAAGATTGGA
* * * *
22644516 TGGTGGCTTCAATTTGTCTCTTTGGATTAGGGGTAAAAGATTGGA
1 T-GTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
* *
22644561 TGGTGGCTTCAATATGCCCCTCTAGATTAGGGGTAAAAGATTGGA
1 T-GTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
* * * * * *
22644606 --TGGCTGCAATTTACCCTTTTGGATTATGGGTAAAAGATTGGA
1 TGTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
* *
22644648 --TGGCTAT-AATCTGCCCCTCTAGATTAGGGGTAAAAGACTGGA
1 TGTGGCT-TCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
* * *
22644690 --TGGCTTCAATCTGCCCCTTTGGATCAGGGGTAAAAGATTAGA
1 TGTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
* * * *
22644732 --TGACTTCAATCTACCCTTCTAGATTAGGGGTAAAAGATTGGA
1 TGTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
* * * *
22644774 T-T-ACTTCAATCTGCCCTTCTGGATTACGGGTAAAAGATCGGA
1 TGTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
* * *
22644816 TGGTGGCTTCAATTTGCCCCTTTGGATTAGAGGTAAAAGATTGGA
1 T-GTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
* * * *
22644861 TGGTGGCTTCGATCCGCCCTTCTGG-TTA-AGGTAAAAGATTGGA
1 T-GTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
* * *
22644904 TG-GTCTTCAATTTG-CCCTTTGG-TT-GGGGTAAAAGATTGGA
1 TGTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
* *
22644944 TG-GTCTTCAATCTG-CCCTCTAG-TTA-GGGTAAAAGATTGGA
1 TGTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
22644984 TG
1 TG
22644986 CTATTTGATG
Statistics
Matches: 437, Mismatches: 68, Indels: 26
0.82 0.13 0.05
Matches are distributed among these distances:
40 60 0.14
41 9 0.02
42 176 0.40
43 17 0.04
44 6 0.01
45 133 0.30
46 35 0.08
47 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (44 bp):
TGTGGCTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGA
Found at i:22645474 original size:49 final size:49
Alignment explanation
Indices: 22645413--22645517 Score: 120
Period size: 49 Copynumber: 2.1 Consensus size: 49
22645403 TTATAGTCTT
* * * * * *
22645413 TAGGGTATAAGATTTGTCGTTACATCTTCAATCTTTCCCTCCATATCTC
1 TAGGGTACAAGATTCGTCATTACAGCTTCAATCTTTCCCTCAACATCTC
* * * *
22645462 TAGGGTACAAGATTCGTCATTGCGGCTTCAATCTTTTCCTCAACATTTC
1 TAGGGTACAAGATTCGTCATTACAGCTTCAATCTTTCCCTCAACATCTC
22645511 TAGGGTA
1 TAGGGTA
22645518 TAGGATTTAA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (49 bp):
TAGGGTACAAGATTCGTCATTACAGCTTCAATCTTTCCCTCAACATCTC
Found at i:22646393 original size:6 final size:6
Alignment explanation
Indices: 22646382--22646441 Score: 56
Period size: 6 Copynumber: 10.3 Consensus size: 6
22646372 TCTCGACCTC
*
22646382 TTCTTT TTCTTTT TTCTTT CTT-ATT TTCTTT TTC--T TTC-TT TTCTTT
1 TTCTTT TTC-TTT TTCTTT -TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT
*
22646428 CTCTTT TTCTTT TT
1 TTCTTT TTCTTT TT
22646442 GGGTGAAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
4 4 0.09
5 6 0.13
6 27 0.60
7 8 0.18
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (6 bp):
TTCTTT
Found at i:22646415 original size:18 final size:19
Alignment explanation
Indices: 22646386--22646439 Score: 74
Period size: 18 Copynumber: 2.8 Consensus size: 19
22646376 GACCTCTTCT
22646386 TTTTCTTTTTTCTTTCTTA
1 TTTTCTTTTTTCTTTCTTA
*
22646405 TTTTC-TTTTTCTTTCTTT
1 TTTTCTTTTTTCTTTCTTA
22646423 TCTTTCTCTTTTTCTTT
1 T-TTTCT-TTTTTCTTT
22646440 TTGGGTGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 13 0.42
19 9 0.29
21 9 0.29
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTCTTTTTTCTTTCTTA
Found at i:22646423 original size:27 final size:25
Alignment explanation
Indices: 22646382--22646441 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 25
22646372 TCTCGACCTC
22646382 TTCTTTTTCTTTTTTCTTTCT-TATT
1 TTCTTTTTCTTTTTTCTTTCTCT-TT
22646407 TTCTTTTTCTTTCTTTTCTTTCTCTTT
1 TTCTTTTTC-TT-TTTTCTTTCTCTTT
22646434 TTCTTTTT
1 TTCTTTTT
22646442 GGGTGAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
25 9 0.28
26 2 0.06
27 20 0.62
28 1 0.03
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (25 bp):
TTCTTTTTCTTTTTTCTTTCTCTTT
Found at i:22646425 original size:15 final size:15
Alignment explanation
Indices: 22646387--22646433 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
22646377 ACCTCTTCTT
22646387 TTTCTTTT-TTCTTTC
1 TTTCTTTTCTT-TTTC
*
22646402 -TTATTTTCTTTTTC
1 TTTCTTTTCTTTTTC
*
22646416 TTTCTTTTCTTTCTC
1 TTTCTTTTCTTTTTC
22646431 TTT
1 TTT
22646434 TTCTTTTTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTCTTTTCTTTTTC
Found at i:22647148 original size:11 final size:11
Alignment explanation
Indices: 22647132--22647174 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
22647122 CTCAACCCTT
22647132 TTTTCTTTTTC
1 TTTTCTTTTTC
*
22647143 TTTTCTTTTGC
1 TTTTCTTTTTC
*
22647154 TCTTT-TTTTCC
1 T-TTTCTTTTTC
22647165 TTTTCTTTTT
1 TTTTCTTTTT
22647175 TTTGACCTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 3 0.11
11 21 0.78
12 3 0.11
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:22650742 original size:120 final size:119
Alignment explanation
Indices: 22650525--22650761 Score: 377
Period size: 120 Copynumber: 2.0 Consensus size: 119
22650515 ATGGGTTACA
22650525 TTTATTTGAGTGTAAACCCAAAACTCTGATATGTGCCCTAACGGTAAGCTCTTACTTTTTTGCGT
1 TTTATTTGAGTGTAAACCCAAAACTCTGATATGTGCCCTAAC-GTAAGCTCTTACTTTTTTGCGT
*
22650590 TGTTTTTCCTTTGACCACATATGCACGACCACGTTATCTTCTACCTTATCAAACG
65 TGTTTTTCCTTTGACCACATACGCACGACCACGTTATCTTCTACCTTATCAAACG
* *
22650645 TTTATTTGAGTGTAAACCCAAAACTTTGATATGTGCCCTTCAA-GTAGGCTCTTACTTTTTTGCG
1 TTTATTTGAGTGTAAACCCAAAACTCTGATATGTGCCC-T-AACGTAAGCTCTTACTTTTTTGCG
* * * *
22650709 TTGTTTTTTCTTTGACCACATACGCATGGCCACGTTGTCTTCTACCTTATCAA
64 TTGTTTTTCCTTTGACCACATACGCACGACCACGTTATCTTCTACCTTATCAA
22650762 GAAACCCGTT
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
120 105 0.97
121 1 0.01
122 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (119 bp):
TTTATTTGAGTGTAAACCCAAAACTCTGATATGTGCCCTAACGTAAGCTCTTACTTTTTTGCGTT
GTTTTTCCTTTGACCACATACGCACGACCACGTTATCTTCTACCTTATCAAACG
Found at i:22651855 original size:16 final size:15
Alignment explanation
Indices: 22651808--22651852 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
22651798 AATAAAAAGG
*
22651808 ATTTTAAAAGGACTA
1 ATTTTAAAAGGATTA
* *
22651823 ATTGTGAAAAGAATTA
1 ATT-TTAAAAGGATTA
22651839 ATTTTAAAAGGATT
1 ATTTTAAAAGGATT
22651853 TAACTAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.47, C:0.02, G:0.16, T:0.36
Consensus pattern (15 bp):
ATTTTAAAAGGATTA
Found at i:22655629 original size:25 final size:24
Alignment explanation
Indices: 22655576--22655630 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
22655566 GGATTTAGGG
*
22655576 TATTTTTGTTTTAATTGGTTTTAA
1 TATTTTTGTTTAAATTGGTTTTAA
* *
22655600 GATTTTT-TTTAAATTAAGGTTTTGA
1 TATTTTTGTTTAAATT--GGTTTTAA
22655625 TATTTT
1 TATTTT
22655631 AAACTAGGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
23 7 0.28
24 6 0.24
25 12 0.48
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.64
Consensus pattern (24 bp):
TATTTTTGTTTAAATTGGTTTTAA
Found at i:22656559 original size:30 final size:30
Alignment explanation
Indices: 22656524--22656588 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
22656514 CAACTTAACA
*
22656524 AACAAATGTCTCTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
*
22656554 AACAAATGCCTCTTAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
22656584 AACAA
1 AACAA
22656589 TAAAATAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.57, C:0.15, G:0.03, T:0.25
Consensus pattern (30 bp):
AACAAATGCCTCTAAAATAATAACAAAATT
Found at i:22661884 original size:10 final size:11
Alignment explanation
Indices: 22661868--22661927 Score: 56
Period size: 10 Copynumber: 5.5 Consensus size: 11
22661858 TTAAAACCCA
22661868 AAAAAGAAAAG
1 AAAAAGAAAAG
*
22661879 -AAAAG-AAGG
1 AAAAAGAAAAG
22661888 AAAAAG--AAG
1 AAAAAGAAAAG
22661897 AAAGAAGAAAAG
1 AAA-AAGAAAAG
22661909 AAAAAGAAAGAAG
1 AAAAAG-AA-AAG
22661922 AAAAAG
1 AAAAAG
22661928 TCAAGATGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
9 8 0.20
10 13 0.32
11 3 0.07
12 8 0.20
13 9 0.22
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:22661899 original size:18 final size:17
Alignment explanation
Indices: 22661880--22661927 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
22661870 AAAGAAAAGA
22661880 AAAGAAGGAAAAAGAAG
1 AAAGAAGGAAAAAGAAG
* *
22661897 AAAGAAGAAAAGAAAAAG
1 AAAGAAGGAAA-AAGAAG
22661915 AAAGAA-GAAAAAG
1 AAAGAAGGAAAAAG
22661928 TCAAGATGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 2 0.08
17 13 0.50
18 11 0.42
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (17 bp):
AAAGAAGGAAAAAGAAG
Found at i:22661910 original size:25 final size:25
Alignment explanation
Indices: 22661876--22661924 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
22661866 CAAAAAAGAA
*
22661876 AAGAAAAGAAGGAA-AAAGAAGAAAG
1 AAGAAAAGAA-AAAGAAAGAAGAAAG
22661901 AAGAAAAGAAAAAGAAAGAAGAAA
1 AAGAAAAGAAAAAGAAAGAAGAAA
22661925 AAGTCAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (25 bp):
AAGAAAAGAAAAAGAAAGAAGAAAG
Found at i:22661933 original size:14 final size:13
Alignment explanation
Indices: 22661890--22661927 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
22661880 AAAGAAGGAA
22661890 AAAGAAGAAAGAAG
1 AAAGAAGAAA-AAG
22661904 -AA-AAGAAAAAG
1 AAAGAAGAAAAAG
22661915 AAAGAAGAAAAAG
1 AAAGAAGAAAAAG
22661928 TCAAGATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 3 0.14
12 8 0.36
13 11 0.50
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AAAGAAGAAAAAG
Found at i:22662888 original size:20 final size:19
Alignment explanation
Indices: 22662834--22662892 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
22662824 AAATTTCACT
*
22662834 AAAAAAAAGAAAAAAGA-G
1 AAAAAAAAGAAAAAAAAGG
22662852 AAAAAAATA-AAATAAAAAGG
1 AAAAAAA-AGAAA-AAAAAGG
22662872 AAAAAAGAAGAAAAAAAAGG
1 AAAAAA-AAGAAAAAAAAGG
22662892 A
1 A
22662893 GAGGTCGAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
18 10 0.29
19 5 0.14
20 16 0.46
21 4 0.11
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAAAAAAGAAAAAAAAGG
Found at i:22663954 original size:98 final size:98
Alignment explanation
Indices: 22663782--22664210 Score: 298
Period size: 105 Copynumber: 4.2 Consensus size: 98
22663772 AATGAAACAT
* * * * * * * *
22663782 CAAATCCTATATCCTTAAAGTTACAAGGATCGGATTAAAACTATCATTGGCAGATCTTTATTTCC
1 CAAATCCTATATCCTTGAAGTTGCAAGGATAGAATTAAAACTAACATTAGCAGACCTTTATCTCC
* *
22663847 CTGAAGTTGCATTGGAGCAAGATAAAGCCAGAC
66 CTGAAGTTGCAGTGGAGAAAGATAAAGCCAGAC
* *
22663880 CAAATCCTATATCCTTGAAGTTGCAAGGATAGAATTAAAACTAACATTAGCATACCTTTATCTCT
1 CAAATCCTATATCCTTGAAGTTGCAAGGATAGAATTAAAACTAACATTAGCAGACCTTTATCTCC
*
22663945 CT-AACGTTGCAGTGGAGAAAGATAAAGCCATAC
66 CTGAA-GTTGCAGTGGAGAAAGATAAAGCCAGAC
* * * *
22663978 CAAATCTTATCTTCC-TGAAGTTGC-AGTGA-AGCGAATTAAAGTGGATTAA-AGTAGTAGCAAA
1 CAAATCCTAT-ATCCTTGAAGTTGCAAG-GATA--GAATTAAA----ACTAACA-T--TAGCAGA
* * * *
22664039 TCTTTATCTCCTTGAAGTTGCAGTGGAGAAAGATAAAGTCACAC
55 CCTTTATCTCCCTGAAGTTGCAGTGGAGAAAGATAAAGCCAGAC
* * * * * *
22664083 CAAATCTTATCTTCC-TGAAGTTGC-AGTGA-AGCGAATTAAATCGGATTAAAGCAGTAGCAAAT
1 CAAATCCTAT-ATCCTTGAAGTTGCAAG-GATA--GAATTAAA----ACT-AA-CATTAGCAGAC
* * * *
22664145 CTTTATCTCCCTGAAGTTGTAGTGGAGTAAGATGAAGCCACAC
56 CTTTATCTCCCTGAAGTTGCAGTGGAGAAAGATAAAGCCAGAC
* * *
22664188 CAAATCTTATCTTCTTGAAGTTG
1 CAAATCCTATATCCTTGAAGTTG
22664211 TAGTGAAGCG
Statistics
Matches: 282, Mismatches: 32, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
97 5 0.02
98 102 0.36
99 11 0.04
102 1 0.00
103 5 0.02
104 2 0.01
105 151 0.54
106 4 0.01
108 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (98 bp):
CAAATCCTATATCCTTGAAGTTGCAAGGATAGAATTAAAACTAACATTAGCAGACCTTTATCTCC
CTGAAGTTGCAGTGGAGAAAGATAAAGCCAGAC
Found at i:22664001 original size:47 final size:46
Alignment explanation
Indices: 22663950--22664215 Score: 156
Period size: 47 Copynumber: 5.2 Consensus size: 46
22663940 TCTCTCTAAC
22663950 GTTGCAGTGGAGAAAGATAAAGCCATACCAAATCTTATCTTCCTGAA
1 GTTGCAGTGGAGAAAGATAAAG-CATACCAAATCTTATCTTCCTGAA
* * *
22663997 GTTGCAGTGAAGCGAATTAAAGTGGATTAAAGTAGTAGCAAATCTTTATC-TCCTTGAA
1 GTTGCAGT---G-G-A-GAAA---GA-TAAAGCA-TACCAAATC-TTATCTTCC-TGAA
*
22664055 GTTGCAGTGGAGAAAGATAAAGTCACACCAAATCTTATCTTCCTGAA
1 GTTGCAGTGGAGAAAGATAAAG-CATACCAAATCTTATCTTCCTGAA
* * *
22664102 GTTGCAGTGAAGCGAATTAAATCGGATTAAAGCAGTAGCAAATCTTTATCTCCCTGAA
1 GTTGCAGT---G-G-A-GAAA---GA-TAAAGCA-TACCAAATC-TTATCTTCCTGAA
* * * * *
22664160 GTTGTAGTGGAGTAAGATGAAGCCACACCAAATCTTATCTTCTTGAA
1 GTTGCAGTGGAGAAAGATAAAG-CATACCAAATCTTATCTTCCTGAA
*
22664207 GTTGTAGTG
1 GTTGCAGTG
22664216 AAGCGGATTA
Statistics
Matches: 172, Mismatches: 19, Indels: 56
0.70 0.08 0.23
Matches are distributed among these distances:
47 45 0.26
48 26 0.15
49 7 0.04
50 2 0.01
51 2 0.01
52 7 0.04
53 8 0.05
54 2 0.01
55 2 0.01
56 7 0.04
57 28 0.16
58 36 0.21
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (46 bp):
GTTGCAGTGGAGAAAGATAAAGCATACCAAATCTTATCTTCCTGAA
Found at i:22664057 original size:58 final size:56
Alignment explanation
Indices: 22663978--22664168 Score: 197
Period size: 58 Copynumber: 3.5 Consensus size: 56
22663968 AAAGCCATAC
22663978 CAAATCTTATCTTCCTGAAGTTGCAGTGAAGCGAATTAAAGTGGATTAAAGTAGTAG
1 CAAATCTTATCTTCCTGAAGTTGCAGTGAAGCGAATTAAA-TGGATTAAAGTAGTAG
* * *
22664035 CAAATCTTTATC-TCCTTGAAGTTGCAGT---G-G-A-GAAA--GA-TAAAGTCA-CAC
1 CAAATC-TTATCTTCC-TGAAGTTGCAGTGAAGCGAATTAAATGGATTAAAGT-AGTAG
*
22664083 CAAATCTTATCTTCCTGAAGTTGCAGTGAAGCGAATTAAATCGGATTAAAGCAGTAG
1 CAAATCTTATCTTCCTGAAGTTGCAGTGAAGCGAATTAAAT-GGATTAAAGTAGTAG
* *
22664140 CAAATCTTTATCTCCCTGAAGTTGTAGTG
1 CAAATC-TTATCTTCCTGAAGTTGCAGTG
22664169 GAGTAAGATG
Statistics
Matches: 109, Mismatches: 9, Indels: 31
0.73 0.06 0.21
Matches are distributed among these distances:
47 17 0.16
48 16 0.15
49 3 0.03
50 1 0.01
51 1 0.01
52 4 0.04
53 4 0.04
54 1 0.01
55 1 0.01
56 3 0.03
57 21 0.19
58 37 0.34
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (56 bp):
CAAATCTTATCTTCCTGAAGTTGCAGTGAAGCGAATTAAATGGATTAAAGTAGTAG
Found at i:22664070 original size:105 final size:105
Alignment explanation
Indices: 22663835--22664227 Score: 468
Period size: 105 Copynumber: 3.8 Consensus size: 105
22663825 TCATTGGCAG
* * * * * *
22663835 ATCTTTATTTCCCTGAAGTTGCATTGGAGCAAGATAAAGCCAGACCAAATCCTAT-ATCCTTGAA
1 ATCTTTATCTCCCTGAAGTTGCAGTGGAGAAAGATAAAGCCACACCAAATCTTATCTTCC-TGAA
* * *
22663899 GTTGCAAG-GATA--GAATTAAA----ACT-AA-CATTAGCAT
65 GTTGC-AGTGA-AGCGAATTAAATCGGATTAAAGCAGTAGCAA
* * *
22663933 ACCTTTATCTCTCT-AACGTTGCAGTGGAGAAAGATAAAGCCATACCAAATCTTATCTTCCTGAA
1 ATCTTTATCTCCCTGAA-GTTGCAGTGGAGAAAGATAAAGCCACACCAAATCTTATCTTCCTGAA
*
22663997 GTTGCAGTGAAGCGAATTAAAGT-GGATTAAAGTAGTAGCAA
65 GTTGCAGTGAAGCGAATTAAA-TCGGATTAAAGCAGTAGCAA
* *
22664038 ATCTTTATCTCCTTGAAGTTGCAGTGGAGAAAGATAAAGTCACACCAAATCTTATCTTCCTGAAG
1 ATCTTTATCTCCCTGAAGTTGCAGTGGAGAAAGATAAAGCCACACCAAATCTTATCTTCCTGAAG
22664103 TTGCAGTGAAGCGAATTAAATCGGATTAAAGCAGTAGCAA
66 TTGCAGTGAAGCGAATTAAATCGGATTAAAGCAGTAGCAA
* * * *
22664143 ATCTTTATCTCCCTGAAGTTGTAGTGGAGTAAGATGAAGCCACACCAAATCTTATCTTCTTGAAG
1 ATCTTTATCTCCCTGAAGTTGCAGTGGAGAAAGATAAAGCCACACCAAATCTTATCTTCCTGAAG
* *
22664208 TTGTAGTGAAGCGGATTAAA
66 TTGCAGTGAAGCGAATTAAA
22664228 ATAATAGCAA
Statistics
Matches: 256, Mismatches: 26, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
97 5 0.02
98 56 0.22
99 11 0.04
103 2 0.01
104 3 0.01
105 177 0.69
106 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (105 bp):
ATCTTTATCTCCCTGAAGTTGCAGTGGAGAAAGATAAAGCCACACCAAATCTTATCTTCCTGAAG
TTGCAGTGAAGCGAATTAAATCGGATTAAAGCAGTAGCAA
Found at i:22664384 original size:39 final size:39
Alignment explanation
Indices: 22664280--22664950 Score: 576
Period size: 42 Copynumber: 16.5 Consensus size: 39
22664270 AACAAAGATA
* *
22664280 CCATCTAATCTCTTACCCCGATCATGGGGCAAATTGAAG
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
* *
22664319 ACATCCTCCAATCTCTTACCCAGATCATGGGGCAGATTGAAG
1 -C--CATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
* *
22664361 CCATCTAATCTCTTACCCTGATCATGGGGCAGATTGAAG
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
* * *
22664400 ATATCATCCAATCTCTTACCCCGATCATAGGGCAGATTGAAA
1 ---CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
* * * *
22664442 TCATCCAATATTTTACCCCGATCATGGGGCAGATTGAAAATA
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTG--AA-G
* * * * *
22664484 TCATCCAATCTCTTACTCAGACCATGAGGCAGATTGAAG
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
* * *
22664523 CCATCCAATCTCTTACACCGATCATGGGGTAGATTAAAG
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
* * * *
22664562 ACATCATCAAATCTCTTACCTCGACCATAGGGCAGATTGAAG
1 -C--CATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
* * ** * *
22664604 CTATTCAATCTCTTACCCTAATCATAGGACAGATTGAAG
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
* * *
22664643 ATATCATCCAATCTATTACCCCGA-CTATGGGGTAGATTGAAG
1 ---CCATCCAATCTCTTACCCCGATC-ATGGGGCAGATTGAAG
* *
22664685 CCATCCAATCT-TTACCCCGATCATGGGGCAAAGTGAAG
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
* * *
22664723 CCACCATCTAATCGT-TTACCCCTAATCAAGAGGAGCAGATTGAAG
1 ---CCATCCAATC-TCTTACCCC-GATCATG-GG-GCAGATTGAAG
* *
22664768 ACACCATCCAATATCTTACCCCGACCATGGGGCAGATTGAAG
1 ---CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
* * *
22664810 CCATCCAATATCTTACCCCAATCTTGGGGCAGATTGAAG
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
*
22664849 ACATCATCCAATCTCTTACCCCGATTATGGGGCAGATTGAAG
1 -C--CATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
** *
22664891 TTA-CCAAATCTCTTACCCCGACCATGGGGCAGATTGAAG
1 CCATCC-AATCTCTTACCCCGATCATGGGGCAGATTGAAG
*
22664930 TCACCATCCAATCTTTTACCC
1 ---CCATCCAATCTCTTACCC
22664951 TTAATCAAGA
Statistics
Matches: 517, Mismatches: 82, Indels: 62
0.78 0.12 0.09
Matches are distributed among these distances:
38 24 0.05
39 209 0.40
40 5 0.01
41 14 0.03
42 223 0.43
43 9 0.02
44 7 0.01
45 26 0.05
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (39 bp):
CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAG
Found at i:22664415 original size:81 final size:81
Alignment explanation
Indices: 22664280--22664950 Score: 657
Period size: 81 Copynumber: 8.2 Consensus size: 81
22664270 AACAAAGATA
* * * *
22664280 CCATCTAATCTCTTACCCCGATCATGGGGCAAATTGAAGACATCCTCCAATCTCTTACCCAGATC
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGATATCATCCAATCTCTTACCCAGATC
22664345 ATGGGGCAGATTGAAG
66 ATGGGGCAGATTGAAG
* * *
22664361 CCATCTAATCTCTTACCCTGATCATGGGGCAGATTGAAGATATCATCCAATCTCTTACCCCGATC
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGATATCATCCAATCTCTTACCCAGATC
* *
22664426 ATAGGGCAGATTGAAA
66 ATGGGGCAGATTGAAG
* * * * * *
22664442 TCATCCAATATTTTACCCCGATCATGGGGCAGATTGAAAATATCATCCAATCTCTTACTCAGACC
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGATATCATCCAATCTCTTACCCAGATC
*
22664507 ATGAGGCAGATTGAAG
66 ATGGGGCAGATTGAAG
* * * * * *
22664523 CCATCCAATCTCTTACACCGATCATGGGGTAGATTAAAGACATCATCAAATCTCTTACCTC-GAC
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGATATCATCCAATCTCTTACC-CAGAT
*
22664587 CATAGGGCAGATTGAAG
65 CATGGGGCAGATTGAAG
* * ** * * * *
22664604 CTATTCAATCTCTTACCCTAATCATAGGACAGATTGAAGATATCATCCAATCTATTACCCCGA-C
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGATATCATCCAATCTCTTACCCAGATC
*
22664668 TATGGGGTAGATTGAAG
66 -ATGGGGCAGATTGAAG
* * ** * *
22664685 CCATCCAATCT-TTACCCCGATCATGGGGCAAAGTGAAGCCACCATCTAATCGT-TTACCCCTA-
1 CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGATATCATCCAATC-TCTTA-CCC-AG
*
22664747 ATCAAGAGGAGCAGATTGAAG
63 ATCATG-GG-GCAGATTGAAG
* * * *
22664768 ACACCATCCAATATCTTACCCCGACCATGGGGCAGATTGAAG---CCATCCAATATCTTACCCCA
1 ---CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGATATCATCCAATCTCTTA-CCCA
*
22664830 -ATCTTGGGGCAGATTGAAG
62 GATCATGGGGCAGATTGAAG
* *
22664849 ACATCATCCAATCTCTTACCCCGATTATGGGGCAGATTGAAG-T-T-A-CCAAATCTCTTACCCC
1 -C--CATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGATATCATCC-AATCTCTTACCCA
*
22664910 GACCATGGGGCAGATTGAAG
62 GATCATGGGGCAGATTGAAG
*
22664930 TCACCATCCAATCTTTTACCC
1 ---CCATCCAATCTCTTACCC
22664951 TTAATCAAGA
Statistics
Matches: 492, Mismatches: 77, Indels: 42
0.81 0.13 0.07
Matches are distributed among these distances:
79 2 0.00
80 40 0.08
81 377 0.77
82 6 0.01
83 18 0.04
84 15 0.03
86 10 0.02
87 24 0.05
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (81 bp):
CCATCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGATATCATCCAATCTCTTACCCAGATC
ATGGGGCAGATTGAAG
Found at i:22674951 original size:230 final size:224
Alignment explanation
Indices: 22674548--22674990 Score: 579
Period size: 230 Copynumber: 1.9 Consensus size: 224
22674538 TATTTGTAAT
* * *
22674548 TTGACTAAGACGTGTTCGCCAAACTTATCTAATTTAAAACTTAAATTAAAGATTTTTACTCCTAA
1 TTGACTAAAACGTGTTCACCAAACTTATATAATTTAAAACTTAAATTAAAGATTTTTACTCCTAA
* * *
22674613 TAAGAACCCTAAAGGATACCTAAATAATTCTAGTAAAATACTTTAAATTTTTAAAATTAATTCTA
66 T---AA--C-AAAGGATACCTAAATAATTCTAATAAAATACCTTAAATTCTTAAAATTAATTCTA
* *
22674678 TTTTAGAATTCTAAAAAAAATTTACTAATGAATTAAGAGAAATATTAAAATTCATCTACAACTTA
125 TTTTAGAATCCTAAAAAAAATTTACTAATAAATTAAGAGAAATATTAAAATTCATCTACAACTTA
22674743 TTCAATCTTTTATCATTACTCCGATTTACTTTAAC
190 TTCAATCTTTTATCATTACTCCGATTTACTTTAAC
* * * *
22674778 TTGACTAAAACGTTTTCATCAAACTTATATAATTTAAAACTTAAATTAGATATTTTTACTCCTAA
1 TTGACTAAAACGTGTTCACCAAACTTATATAATTTAAAACTTAAATTAAAGATTTTTACTCCTAA
*
22674843 T-A-AAA-GATACCTAAATAATTCTAATAAAATACCTTCAATTCTT-AAATTAATTCTATTTTAG
66 TAACAAAGGATACCTAAATAATTCTAATAAAATACCTTAAATTCTTAAAATTAATTCTATTTTAG
*
22674904 AATCCTAAAAAAAAAAGCCTAAAAGTTACTAATAAATTAAGAGAAATATTAAAATTTATCTACAA
131 AATCCT--AAAAAAAA---T-----TTACTAATAAATTAAGAGAAATATTAAAATTCATCTACAA
*
22674969 CTTATTCGATCTTTTATCATTA
186 CTTATTCAATCTTTTATCATTA
22674991 TTATGATTTT
Statistics
Matches: 188, Mismatches: 15, Indels: 20
0.84 0.07 0.09
Matches are distributed among these distances:
220 23 0.12
221 34 0.18
222 11 0.06
225 1 0.01
226 1 0.01
230 118 0.63
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.38
Consensus pattern (224 bp):
TTGACTAAAACGTGTTCACCAAACTTATATAATTTAAAACTTAAATTAAAGATTTTTACTCCTAA
TAACAAAGGATACCTAAATAATTCTAATAAAATACCTTAAATTCTTAAAATTAATTCTATTTTAG
AATCCTAAAAAAAATTTACTAATAAATTAAGAGAAATATTAAAATTCATCTACAACTTATTCAAT
CTTTTATCATTACTCCGATTTACTTTAAC
Done.