Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 85 of 135
Found at i:26221767 original size:21 final size:23
Alignment explanation
Indices: 26221733--26221776 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
26221723 ACATTCATTT
26221733 TCAACATTTCAATCAAT-CAAGAA
1 TCAACATTTCAATC-ATGCAAGAA
26221756 TCAA-ATTT-AATCATGCAAGAA
1 TCAACATTTCAATCATGCAAGAA
26221777 CTTAGGATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 2 0.10
21 10 0.50
22 4 0.20
23 4 0.20
ACGTcount: A:0.48, C:0.18, G:0.07, T:0.27
Consensus pattern (23 bp):
TCAACATTTCAATCATGCAAGAA
Found at i:26235750 original size:3 final size:3
Alignment explanation
Indices: 26235738--26235775 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
26235728 AATTTGCATC
26235738 AGA A-A AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
26235776 GCTAGTTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:26256080 original size:22 final size:23
Alignment explanation
Indices: 26256041--26256108 Score: 104
Period size: 23 Copynumber: 3.0 Consensus size: 23
26256031 ATATCAAAAG
*
26256041 CAACAAAAATATTGAAAAATAAA
1 CAACAAAAATACTGAAAAATAAA
26256064 CAAC-AAAATACT-AAAAACTAAA
1 CAACAAAAATACTGAAAAA-TAAA
26256086 CAACAAAAATACTGAAAAATAAA
1 CAACAAAAATACTGAAAAATAAA
26256109 GAAAAATGCA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
21 5 0.12
22 15 0.37
23 16 0.39
24 5 0.12
ACGTcount: A:0.69, C:0.13, G:0.03, T:0.15
Consensus pattern (23 bp):
CAACAAAAATACTGAAAAATAAA
Found at i:26261774 original size:7 final size:7
Alignment explanation
Indices: 26261735--26261774 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
26261725 AATATATATA
26261735 TTTTCTT
1 TTTTCTT
26261742 TTCTTCTT
1 TT-TTCTT
*
26261750 TTTCCTT
1 TTTTCTT
*
26261757 TTTTCTC
1 TTTTCTT
26261764 TTTTCTT
1 TTTTCTT
26261771 TTTT
1 TTTT
26261775 TATATGTGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 21 0.75
8 7 0.25
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTCTT
Found at i:26262838 original size:12 final size:12
Alignment explanation
Indices: 26262802--26262848 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
26262792 TTTGCCTCGA
26262802 CTTCTTTTCCTT
1 CTTCTTTTCCTT
*
26262814 CCTCTCTTT-CTT
1 CTTCT-TTTCCTT
26262826 CTTCTTTTCCTT
1 CTTCTTTTCCTT
26262838 CTTCTTCTTCC
1 CTTCTT-TTCC
26262849 ACTTCTTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 3 0.10
12 20 0.67
13 7 0.23
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (12 bp):
CTTCTTTTCCTT
Found at i:26262853 original size:24 final size:24
Alignment explanation
Indices: 26262801--26262855 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
26262791 ATTTGCCTCG
*
26262801 ACTTCTTTTCCTTCCTCTCTTTCT
1 ACTTCTTTTCCTTCCTCTCTTTCC
* *
26262825 TCTTCTTTTCCTTCTTCT-TCTTCC
1 ACTTCTTTTCCTTCCTCTCT-TTCC
26262849 ACTTCTT
1 ACTTCTT
26262856 CCACTTGTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.04, C:0.36, G:0.00, T:0.60
Consensus pattern (24 bp):
ACTTCTTTTCCTTCCTCTCTTTCC
Found at i:26272618 original size:18 final size:18
Alignment explanation
Indices: 26272591--26272633 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
26272581 TTCTTCAGGG
* *
26272591 TCTTCCTCAGAGTCCTCT
1 TCTTCTTCAGAATCCTCT
*
26272609 TCTTCTTCAGAATCTTCT
1 TCTTCTTCAGAATCCTCT
26272627 TCTTCTT
1 TCTTCTT
26272634 TAACAAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.12, C:0.33, G:0.07, T:0.49
Consensus pattern (18 bp):
TCTTCTTCAGAATCCTCT
Found at i:26279807 original size:81 final size:82
Alignment explanation
Indices: 26279652--26279815 Score: 312
Period size: 81 Copynumber: 2.0 Consensus size: 82
26279642 AAAAAGGCCA
*
26279652 AACCTAGACTCATTAGATGGATCCTACTCCTCCAAGAATTTGCTATCAAAATCAGAGATAGGAAA
1 AACCTAGACTCATTAGATGGATCCTACTCCTCCAAGAATTTGATATCAAAATCAGAGATAGGAAA
26279717 GGATTTGAGAATCAAGT
66 GGATTTGAGAATCAAGT
26279734 AACCTAGACTCATTAGATGGATCCTACTCCTCCAAG-ATTTGATATCAAAATCAGAGATAGGAAA
1 AACCTAGACTCATTAGATGGATCCTACTCCTCCAAGAATTTGATATCAAAATCAGAGATAGGAAA
26279798 GGATTTGAGAATCAAGT
66 GGATTTGAGAATCAAGT
26279815 A
1 A
26279816 CCTGACCACT
Statistics
Matches: 81, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
81 45 0.56
82 36 0.44
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (82 bp):
AACCTAGACTCATTAGATGGATCCTACTCCTCCAAGAATTTGATATCAAAATCAGAGATAGGAAA
GGATTTGAGAATCAAGT
Found at i:26283559 original size:17 final size:17
Alignment explanation
Indices: 26283537--26283574 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
26283527 AGTTTTCATA
*
26283537 CATTTTTATTGT-GTCTG
1 CATTTTAATTGTCGT-TG
26283554 CATTTTAATTGTCGTTG
1 CATTTTAATTGTCGTTG
26283571 CATT
1 CATT
26283575 CATTTTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.16, C:0.13, G:0.16, T:0.55
Consensus pattern (17 bp):
CATTTTAATTGTCGTTG
Found at i:26290585 original size:70 final size:70
Alignment explanation
Indices: 26290444--26290586 Score: 153
Period size: 70 Copynumber: 2.0 Consensus size: 70
26290434 ATGTTGCAAA
* * * * *
26290444 AAAGGGGTTAGACTACTAAAATTTCAAAACTGATAGGTTTGTCACGACACAGAAGGCGCTATGTT
1 AAAGGGGTCAGACTACTAAAATATCAAAACTGATAGGTTTGTCACGACACAGAAGGAGCTACGTC
**
26290509 GTGAC
66 ACGAC
* ** * * *
26290514 AAAGGGGTCAGATTACTGGAATATCAAGACTGATAGGTTTGTCGCGACACA-AGGGGAGCTACGT
1 AAAGGGGTCAGACTACTAAAATATCAAAACTGATAGGTTTGTCACGACACAGA-AGGAGCTACGT
26290578 CACGAC
65 CACGAC
26290584 AAA
1 AAA
26290587 ATGGGTACTG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
69 1 0.02
70 58 0.98
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (70 bp):
AAAGGGGTCAGACTACTAAAATATCAAAACTGATAGGTTTGTCACGACACAGAAGGAGCTACGTC
ACGAC
Found at i:26292727 original size:41 final size:41
Alignment explanation
Indices: 26292670--26292750 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
26292660 GTGTTTAATA
*
26292670 AAAAAAACTAATTTTGGGATTCTAGATTGCTTGGAGTACTC
1 AAAAAAACTAATTTTGGGATTCTAGATTGCTTAGAGTACTC
*
26292711 AAAAAAACTGATTTTGGGATTCTAGATTGCTTAGAGTACT
1 AAAAAAACTAATTTTGGGATTCTAGATTGCTTAGAGTACT
26292751 AGGTTTTGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (41 bp):
AAAAAAACTAATTTTGGGATTCTAGATTGCTTAGAGTACTC
Found at i:26293045 original size:10 final size:11
Alignment explanation
Indices: 26293015--26293055 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
26293005 ATAATATATT
*
26293015 TTTATTATTTA
1 TTTATAATTTA
26293026 TTTATAATTTA
1 TTTATAATTTA
26293037 TTT-TAATTT-
1 TTTATAATTTA
*
26293046 TATATAATTT
1 TTTATAATTT
26293056 TAGATTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
9 2 0.07
10 12 0.44
11 13 0.48
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTATAATTTA
Found at i:26294658 original size:27 final size:27
Alignment explanation
Indices: 26294628--26294693 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
26294618 CTTGACCGCT
26294628 TTTGTGGCGTA-TTCTAAATGGATTGCC
1 TTTGTGGCGTACTT-TAAATGGATTGCC
* *
26294655 TTTGTGGTGTACTTTGAATGGATTGCC
1 TTTGTGGCGTACTTTAAATGGATTGCC
26294682 TTTGTGGCGTAC
1 TTTGTGGCGTAC
26294694 CATGATGAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
27 33 0.94
28 2 0.06
ACGTcount: A:0.15, C:0.14, G:0.29, T:0.42
Consensus pattern (27 bp):
TTTGTGGCGTACTTTAAATGGATTGCC
Found at i:26297522 original size:5 final size:5
Alignment explanation
Indices: 26297512--26297544 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
26297502 TAAGTGAAGA
*
26297512 AAAGG AAAGG AAAGG AAAGG AAAAG AAA-G AAAG
1 AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG AAAG
26297545 TAATGGAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (5 bp):
AAAGG
Found at i:26298367 original size:18 final size:18
Alignment explanation
Indices: 26298340--26298381 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
26298330 TTTAACAATC
26298340 TATT-TTATA-TTGATCTT
1 TATTATTATATTTGATC-T
*
26298357 TATTATTATATTTTATCT
1 TATTATTATATTTGATCT
26298375 TATTATT
1 TATTATT
26298382 TTAACTGCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 4 0.18
18 13 0.59
19 5 0.23
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (18 bp):
TATTATTATATTTGATCT
Found at i:26318176 original size:74 final size:76
Alignment explanation
Indices: 26317995--26318180 Score: 200
Period size: 80 Copynumber: 2.4 Consensus size: 76
26317985 TTTTTTTGTA
*
26317995 AAACTCAAATACCATTATTTATTTCACTGAAGCGGTGAAGCAACTATTTAAGTTTCCTTTATTTG
1 AAACTCAAATACCATTATTTACTTCACTGAAGCGGTGAAGCAACTATTTAAGTTTCC--T-TTTG
**
26318060 TTTATTTTTATTTT
63 TCCATTTTTATTTT
* * * * *
26318074 AAAACCCAAACATCATTATTTACTTCACTGAAGCGGTGCAGCTAACTCTTTAAGTTT-C-TTT-T
1 -AAACTCAAATACCATTATTTACTTCACTGAAGCGGTGAAGC-AACTATTTAAGTTTCCTTTTGT
*
26318136 CCATTTTTCTCTTT
64 CCATTTTTAT-TTT
*
26318150 -AACTCAAATACCATTATTTCCTTCACTGAAG
1 AAACTCAAATACCATTATTTACTTCACTGAAG
26318181 TAGCGAAACT
Statistics
Matches: 91, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
74 27 0.30
75 8 0.09
76 6 0.07
80 37 0.41
81 13 0.14
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (76 bp):
AAACTCAAATACCATTATTTACTTCACTGAAGCGGTGAAGCAACTATTTAAGTTTCCTTTTGTCC
ATTTTTATTTT
Found at i:26321471 original size:22 final size:22
Alignment explanation
Indices: 26321443--26321486 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26321433 TTAAGTAAAG
26321443 AAAATAAGAGAATAATGTTATC
1 AAAATAAGAGAATAATGTTATC
26321465 AAAATAAGAGAATAATGTTATC
1 AAAATAAGAGAATAATGTTATC
26321487 TTCAACCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.05, G:0.14, T:0.27
Consensus pattern (22 bp):
AAAATAAGAGAATAATGTTATC
Found at i:26322897 original size:24 final size:24
Alignment explanation
Indices: 26322858--26322904 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26322848 AAACTCTGTC
* *
26322858 TGGGCTCGTAAGAGCTAACCTATT
1 TGGGCTCATAAAAGCTAACCTATT
26322882 TGGGCTCATAAAAGCTAACCTAT
1 TGGGCTCATAAAAGCTAACCTAT
26322905 CTAGGCTCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
TGGGCTCATAAAAGCTAACCTATT
Found at i:26322911 original size:24 final size:24
Alignment explanation
Indices: 26322860--26322912 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
26322850 ACTCTGTCTG
* * * *
26322860 GGCTCGTAAGAGCTAACCTATTTG
1 GGCTCATAAAAGCTAACCTATCTA
26322884 GGCTCATAAAAGCTAACCTATCTA
1 GGCTCATAAAAGCTAACCTATCTA
26322908 GGCTC
1 GGCTC
26322913 GTAAGAGTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (24 bp):
GGCTCATAAAAGCTAACCTATCTA
Found at i:26325814 original size:43 final size:43
Alignment explanation
Indices: 26325744--26325825 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
26325734 ACACCACATG
** ** *
26325744 ATAACTACAATATTTTTTAAGTACATAACTAGTATTACATCAC
1 ATAACTACAATATCGTCCAAGTACATAACTAATATTACATCAC
*
26325787 ATAACTACAATATCGTCCAAGTGCATAACTAATATTACA
1 ATAACTACAATATCGTCCAAGTACATAACTAATATTACA
26325826 AATTAGTAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.43, C:0.18, G:0.06, T:0.33
Consensus pattern (43 bp):
ATAACTACAATATCGTCCAAGTACATAACTAATATTACATCAC
Found at i:26325893 original size:102 final size:99
Alignment explanation
Indices: 26325714--26325967 Score: 409
Period size: 102 Copynumber: 2.5 Consensus size: 99
26325704 AAACCACAAT
* **
26325714 TAATATTACAAATTAGTAGTACACCACATGATAACTACAATATTTTTTAAGTACATAACTAGTAT
1 TAATATTACAAATTAGTAGTACACCACATGATAACTATAA-A-TTAATAA-TACATAACTAGTAT
*
26325779 TACATCACATAACTACAATATCGTCCAAGTGCATAAC
63 TACACCACATAACTACAATATCGTCCAAGTGCATAAC
26325816 TAATATTACAAATTAGTAGTACACCACATGATAACTATAAATTAATAATACATAACTAGTATTAC
1 TAATATTACAAATTAGTAGTACACCACATGATAACTATAAATTAATAATACATAACTAGTATTAC
26325881 ACCACGTGATAACTACAATATCGTCCAAGTGCATAAC
66 ACCAC---ATAACTACAATATCGTCCAAGTGCATAAC
*
26325918 TAATATTACAAATTAGTAGTACACCATATGATAACTATAAATTAATAATA
1 TAATATTACAAATTAGTAGTACACCACATGATAACTATAAATTAATAATA
26325968 TTATCTAAGT
Statistics
Matches: 144, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
99 21 0.15
100 5 0.03
101 1 0.01
102 117 0.81
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (99 bp):
TAATATTACAAATTAGTAGTACACCACATGATAACTATAAATTAATAATACATAACTAGTATTAC
ACCACATAACTACAATATCGTCCAAGTGCATAAC
Found at i:26327879 original size:9 final size:9
Alignment explanation
Indices: 26327865--26327897 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
26327855 ATAAGTATAA
*
26327865 AAATTACTC
1 AAATTACCC
26327874 AAATTACCC
1 AAATTACCC
26327883 AAATTACCC
1 AAATTACCC
26327892 AAATTA
1 AAATTA
26327898 ATCGAATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.27
Consensus pattern (9 bp):
AAATTACCC
Found at i:26327905 original size:9 final size:8
Alignment explanation
Indices: 26327893--26327951 Score: 55
Period size: 9 Copynumber: 6.8 Consensus size: 8
26327883 AAATTACCCA
26327893 AATTAATCG
1 AATTAA-CG
26327902 AATTAACCG
1 AATTAA-CG
26327911 AATTAACTG
1 AATTAAC-G
*
26327920 AATTACCTG
1 AATTAAC-G
*
26327929 AATTAAAG
1 AATTAACG
26327937 AATTAATCG
1 AATTAA-CG
26327946 AATTAA
1 AATTAA
26327952 AGTATTGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
8 8 0.19
9 35 0.81
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (8 bp):
AATTAACG
Found at i:26327905 original size:18 final size:18
Alignment explanation
Indices: 26327884--26327926 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
26327874 AAATTACCCA
26327884 AATTACCCAAATTAA-TCG
1 AATTACCCAAATTAACT-G
* *
26327902 AATTAACCGAATTAACTG
1 AATTACCCAAATTAACTG
26327920 AATTACC
1 AATTACC
26327927 TGAATTAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (18 bp):
AATTACCCAAATTAACTG
Found at i:26327952 original size:17 final size:17
Alignment explanation
Indices: 26327901--26327953 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
26327891 CAAATTAATC
*
26327901 GAATTAACCGAATTAACT
1 GAATTAACCGAATTAA-A
26327919 GAATT-ACCTGAATTAAA
1 GAATTAACC-GAATTAAA
*
26327936 GAATTAATCGAATTAAA
1 GAATTAACCGAATTAAA
26327953 G
1 G
26327954 TATTGAATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 17 0.55
18 14 0.45
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.28
Consensus pattern (17 bp):
GAATTAACCGAATTAAA
Found at i:26328186 original size:21 final size:23
Alignment explanation
Indices: 26328162--26328203 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
26328152 ATAAACAAAT
*
26328162 GAATAA-ATTGTAAGT-TACCAA
1 GAATAATATAGTAAGTATACCAA
26328183 GAATAATATAGTAAGTATACC
1 GAATAATATAGTAAGTATACC
26328204 CTTTAACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 8 0.44
23 4 0.22
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.29
Consensus pattern (23 bp):
GAATAATATAGTAAGTATACCAA
Found at i:26333945 original size:23 final size:24
Alignment explanation
Indices: 26333902--26333947 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26333892 GAAGTCGGAC
*
26333902 GGTGTGATTGGTGGGACACCAGAT
1 GGTGTGACTGGTGGGACACCAGAT
26333926 GGTGTGACTGGT-GGACACCAGA
1 GGTGTGACTGGTGGGACACCAGA
26333948 CGGTTCATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.22, C:0.15, G:0.41, T:0.22
Consensus pattern (24 bp):
GGTGTGACTGGTGGGACACCAGAT
Found at i:26334085 original size:14 final size:14
Alignment explanation
Indices: 26334066--26334099 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
26334056 GATTAGGATT
26334066 TTTTAGTTTTAGAC
1 TTTTAGTTTTAGAC
*
26334080 TTTTAGTTTTAGTC
1 TTTTAGTTTTAGAC
26334094 TTTTAG
1 TTTTAG
26334100 GATTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.06, G:0.15, T:0.62
Consensus pattern (14 bp):
TTTTAGTTTTAGAC
Found at i:26334796 original size:32 final size:32
Alignment explanation
Indices: 26334755--26334836 Score: 123
Period size: 32 Copynumber: 2.6 Consensus size: 32
26334745 TGTTAATCAT
26334755 TTCAATATCCAACAAACTTAAAACATAATAAA
1 TTCAATATCCAACAAACTTAAAACATAATAAA
*
26334787 TTCAATATCCAAC-AACTTTAAAACATAATAAT
1 TTCAATATCCAACAAAC-TTAAAACATAATAAA
26334819 TTCACA-ATCCAACAAACT
1 TTCA-ATATCCAACAAACT
26334837 AATTTCAATA
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
31 3 0.07
32 39 0.85
33 4 0.09
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (32 bp):
TTCAATATCCAACAAACTTAAAACATAATAAA
Found at i:26349756 original size:50 final size:50
Alignment explanation
Indices: 26349625--26349785 Score: 234
Period size: 50 Copynumber: 3.2 Consensus size: 50
26349615 AGGTTGATCA
*
26349625 CTTGTCCACAAAATTATATCAATGGTAGTATATCTACACATCAGTGGT-G
1 CTTGTCCACAAAATTATATCAGTGGTAGTATATCTACACATCAGTGGTGG
* * *
26349674 TTTGTCCAAAAAATTATATCAGTGGTAGTATATCTGCACATCAGTGGTGG
1 CTTGTCCACAAAATTATATCAGTGGTAGTATATCTACACATCAGTGGTGG
* * * * *
26349724 CTTGTCCACTAAATAATATTAGTGATAGTATATCTACATATCAGTGGTGG
1 CTTGTCCACAAAATTATATCAGTGGTAGTATATCTACACATCAGTGGTGG
26349774 CTTGTCCACAAA
1 CTTGTCCACAAA
26349786 TGATGTTTTA
Statistics
Matches: 98, Mismatches: 13, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
49 44 0.45
50 54 0.55
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (50 bp):
CTTGTCCACAAAATTATATCAGTGGTAGTATATCTACACATCAGTGGTGG
Found at i:26355240 original size:19 final size:19
Alignment explanation
Indices: 26355216--26355253 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
26355206 TTTTGGCTAT
26355216 CTAAGTTCAAAAGTTTCAA
1 CTAAGTTCAAAAGTTTCAA
26355235 CTAAGTTCAAAAGTTTCAA
1 CTAAGTTCAAAAGTTTCAA
26355254 TTGAGGAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (19 bp):
CTAAGTTCAAAAGTTTCAA
Found at i:26359767 original size:20 final size:20
Alignment explanation
Indices: 26359742--26359783 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
26359732 CTTAATAATA
26359742 ATCCAACCAATCCAATGTCG
1 ATCCAACCAATCCAATGTCG
26359762 ATCCAACCAATCCAATGTCG
1 ATCCAACCAATCCAATGTCG
26359782 AT
1 AT
26359784 TGCGCGGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.33, G:0.10, T:0.21
Consensus pattern (20 bp):
ATCCAACCAATCCAATGTCG
Found at i:26364341 original size:30 final size:31
Alignment explanation
Indices: 26364303--26364372 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
26364293 ATCAACAAAT
26364303 AATT-TTAAAATTA-TTTTTTAAGAAT-ATAA
1 AATTATTAAAATTATTTTTTTAA-AATAATAA
26364332 AATTATTAAAATTATTTTTTTAAAATAATAA
1 AATTATTAAAATTATTTTTTTAAAATAATAA
26364363 AATTATTAAA
1 AATTATTAAA
26364373 TAAGTTTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
29 4 0.11
30 12 0.32
31 22 0.58
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (31 bp):
AATTATTAAAATTATTTTTTTAAAATAATAA
Found at i:26364434 original size:30 final size:31
Alignment explanation
Indices: 26364398--26364573 Score: 180
Period size: 31 Copynumber: 5.8 Consensus size: 31
26364388 ATTTACAGAT
* * *
26364398 TTTTTTCTAAAATTTTATTTT-AGCCTCCAA
1 TTTTTTCTAAAATTATATTTTGACCCTCAAA
26364428 TTTTTTCTAAAATTATATTTTGACCCTCAAA
1 TTTTTTCTAAAATTATATTTTGACCCTCAAA
* *
26364459 TTTTTT-TAAAATTATATTTTGACCTTTAAA
1 TTTTTTCTAAAATTATATTTTGACCCTCAAA
* * * *
26364489 -CTATT-TAAAATTACATTTTGACCCTTAAA
1 TTTTTTCTAAAATTATATTTTGACCCTCAAA
** * *
26364518 ACTTTTCTAAAATTACATTTTGACCCTTAAA
1 TTTTTTCTAAAATTATATTTTGACCCTCAAA
** *
26364549 ACTTTCCTAAAATTATATTTTGACC
1 TTTTTTCTAAAATTATATTTTGACC
26364574 ATTAAACTTC
Statistics
Matches: 131, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
29 25 0.19
30 46 0.35
31 60 0.46
ACGTcount: A:0.33, C:0.16, G:0.03, T:0.48
Consensus pattern (31 bp):
TTTTTTCTAAAATTATATTTTGACCCTCAAA
Found at i:26364591 original size:30 final size:30
Alignment explanation
Indices: 26364430--26364721 Score: 290
Period size: 30 Copynumber: 9.8 Consensus size: 30
26364420 GCCTCCAATT
* * * *
26364430 TTTTCTAAAATTATATTTTGACCCTCAAAT
1 TTTTCCAAAATTACATTTTGACCCTTAAAC
** * *
26364460 TTTTTTAAAATTATATTTTGACCTTTAAAC
1 TTTTCCAAAATTACATTTTGACCCTTAAAC
26364490 TATTT--AAAATTACATTTTGACCCTTAAAAC
1 T-TTTCCAAAATTACATTTTGACCCTT-AAAC
*
26364520 TTTTCTAAAATTACATTTTGACCCTTAAAAC
1 TTTTCCAAAATTACATTTTGACCCTT-AAAC
* *
26364551 -TTTCCTAAAATTATATTTTGACCATTAAAC
1 TTTTCC-AAAATTACATTTTGACCCTTAAAC
* * *
26364581 TTCTCCAAAATTACATTTTAACCTTTAAAC
1 TTTTCCAAAATTACATTTTGACCCTTAAAC
* * *
26364611 TTTTCTAAAATCACA-TTTGACCC-CAAAC
1 TTTTCCAAAATTACATTTTGACCCTTAAAC
* * **
26364639 TTCTCCAAAATTACATTTTAACCCCCAAAC
1 TTTTCCAAAATTACATTTTGACCCTTAAAC
* *
26364669 TTTTCCAAAATCACATTTTAAGCCC-TAAAC
1 TTTTCCAAAATTACATTTTGA-CCCTTAAAC
26364699 TTTTCCAAAATTACATTTTGACC
1 TTTTCCAAAATTACATTTTGACC
26364722 TCGAATTCCC
Statistics
Matches: 225, Mismatches: 28, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
28 16 0.07
29 36 0.16
30 120 0.53
31 53 0.24
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.40
Consensus pattern (30 bp):
TTTTCCAAAATTACATTTTGACCCTTAAAC
Found at i:26364735 original size:88 final size:89
Alignment explanation
Indices: 26364516--26364745 Score: 252
Period size: 88 Copynumber: 2.6 Consensus size: 89
26364506 TTGACCCTTA
* * * * * **
26364516 AAACTTTTCTAAAATTACATTTTGACCCTTAAAACTTTCCTAAAATTATATTTTGACCATTAAAC
1 AAACTTTTCTAAAATTACATTTTGA-CC-TCAAACTTCCCCAAAATTACATTTTAACCACCAAAC
* *
26364581 TTCTCCAAAATTACATTTTAACCTTT
64 TTCTCCAAAATCACATTTTAACCTCT
* * * *
26364607 AAACTTTTCTAAAATCACA-TTTGACCCCAAACTTCTCCAAAATTACATTTTAACCCCCAAACTT
1 AAACTTTTCTAAAATTACATTTTGACCTCAAACTTCCCCAAAATTACATTTTAACCACCAAACTT
*
26364671 TTCCAAAATCACATTTTAAGCC-CT
66 CTCCAAAATCACATTTTAA-CCTCT
* *
26364695 AAACTTTTCCAAAATTACATTTTGACCTCGAA-TTCCCCAAAACTT-CATTTT
1 AAACTTTTCTAAAATTACATTTTGACCTCAAACTTCCCCAAAA-TTACATTTT
26364746 CGACCTCGTT
Statistics
Matches: 117, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
88 78 0.67
89 16 0.14
90 5 0.04
91 18 0.15
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.37
Consensus pattern (89 bp):
AAACTTTTCTAAAATTACATTTTGACCTCAAACTTCCCCAAAATTACATTTTAACCACCAAACTT
CTCCAAAATCACATTTTAACCTCT
Found at i:26364736 original size:58 final size:57
Alignment explanation
Indices: 26364576--26364723 Score: 197
Period size: 58 Copynumber: 2.5 Consensus size: 57
26364566 TTTTGACCAT
* * *
26364576 TAAACTTCTCCAAAATTACATTTTAACCTTTAAACTTTTCTAAAATCACATTTGACCC
1 TAAACTTCTCCAAAATTACATTTTAACC-TCAAACTTTTCCAAAATCACATTTAACCC
* *
26364634 CAAACTTCTCCAAAATTACATTTTAACCCCCAAACTTTTCCAAAATCACATTTTAAGCCC
1 TAAACTTCTCCAAAATTACATTTTAA-CCTCAAACTTTTCCAAAATCACA-TTTAA-CCC
* *
26364694 TAAACTTTTCCAAAATTACATTTTGACCTC
1 TAAACTTCTCCAAAATTACATTTTAACCTC
26364724 GAATTCCCCA
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
58 43 0.55
59 9 0.12
60 26 0.33
ACGTcount: A:0.36, C:0.27, G:0.02, T:0.35
Consensus pattern (57 bp):
TAAACTTCTCCAAAATTACATTTTAACCTCAAACTTTTCCAAAATCACATTTAACCC
Found at i:26369356 original size:7 final size:7
Alignment explanation
Indices: 26369341--26369373 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
26369331 GACATGTTAA
26369341 AAAAAAG
1 AAAAAAG
*
26369348 AAGAAAG
1 AAAAAAG
26369355 AAAAAAG
1 AAAAAAG
26369362 AAAAAAG
1 AAAAAAG
26369369 AAAAA
1 AAAAA
26369374 TAAAACAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:26369455 original size:16 final size:17
Alignment explanation
Indices: 26369431--26369463 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26369421 CTTGAAACCC
*
26369431 AAGGCAAAA-AAAGAAA
1 AAGGAAAAACAAAGAAA
26369447 AAGGAAAAACAAAGAAA
1 AAGGAAAAACAAAGAAA
26369464 GGAATGTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.76, C:0.06, G:0.18, T:0.00
Consensus pattern (17 bp):
AAGGAAAAACAAAGAAA
Found at i:26371344 original size:50 final size:49
Alignment explanation
Indices: 26371257--26371968 Score: 478
Period size: 50 Copynumber: 14.3 Consensus size: 49
26371247 TAGGTTTAAC
* * * *
26371257 AGGGAAAGATTGAGGCCGCGACGGTGAATCCGGTACCTTAAAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACC-TAAAAGATGTGA
* * **
26371307 AGGGAAAGTTTGAGGCCGCAACGACGAACCCAATACCTAAGAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTAA-AAGATGTGA
* * * ** * *
26371357 TGGGAAAGGTTGAGGCTGTAATAGCGAACTCGATACCTAAGAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTAA-AAGATGTGA
* * * *
26371407 TA-GGAAAGGTTGAGGCCGTAACGGCGAACCCGATACC-ATGAAGATGTAA
1 -AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTA-AAAGATGTGA
*
26371456 AGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTAA-AAGATGTGA
* * *
26371506 TA-GGAAAGGTTGAGGCCGCAACGGTGAACCCGGTATC-ATGAAGA-GATGA
1 -AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTA-AAAGATG-TGA
* * ** * *
26371555 AGGG-AAGGACTGAGGCCGCGACGGTAAATCCAGTACCTTAAAAGATGTGA
1 AGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGGTACC-TAAAAGATGTGA
* * **
26371605 TGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACC-ACGAAGATACGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTA-AAAGATGTGA
* * * * *
26371654 AGGGAAAGGTTGAGGCCGTAATGACGAACTCGGTACCTAAGAAGATGTGG
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTAA-AAGATGTGA
* * * ** ** ** * *
26371704 CGGGCAAGGTTGAGGTCAAAATAGTAAACTCGGTA-CTAGGAAGA-GATGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTA-AAAGATG-TGA
* * * * *
26371753 AGGG-AAGGATTGAGGCTGCGACGGTGAATCCGGTACCTTAGAAGATGTGA
1 AGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGGTACC-TAAAAGATGTGA
* * * *
26371803 TGGGAAAGGTTGAGGTCGCAACGGTGAACCTGGTACCTAAGAAGATGTGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTAA-AAGATGTGA
* ** * *
26371853 TGGGAAAGGTTGAGGTGGCAACGACGAACCCGGTACC-ATGAAGA-GATGA
1 AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTA-AAAGATG-TGA
* * * * * * * *
26371902 AGGG-AAGGATTGAGGCCCCGACGGTGAATCCGATACTTTAGAAGATGTGG
1 AGGGAAAGG-TTGAGGCCGCAACGGCGAACCCGGTAC-CTAAAAGATGTGA
* *
26371952 TGGGAAAGGTTAAGGCC
1 AGGGAAAGGTTGAGGCC
26371969 ATAATGACAA
Statistics
Matches: 526, Mismatches: 103, Indels: 66
0.76 0.15 0.09
Matches are distributed among these distances:
48 18 0.03
49 175 0.33
50 313 0.60
51 20 0.04
ACGTcount: A:0.32, C:0.16, G:0.34, T:0.17
Consensus pattern (49 bp):
AGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTAAAAGATGTGA
Found at i:26371501 original size:99 final size:99
Alignment explanation
Indices: 26371257--26371968 Score: 571
Period size: 99 Copynumber: 7.2 Consensus size: 99
26371247 TAGGTTTAAC
* * * *
26371257 AGGGAAAGATTGAGGCCGCGACGGTGAATCCGGTACCTTAA-AAGATGTGA-AGGGAAAGTTTGA
1 AGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACC-TAAGAAGATGTGATA-GGAAAGGTTGA
* **
26371320 GGCCGCAACGACGAACCCAATACCTAAGAAGATGTGA
64 GGCCGCAACGGCGAACCCGGTACC-AAGAAGATGTGA
* * * ** * * *
26371357 TGGGAAAGGTTGAGGCTGTAATAGCGAACTCGATACCTAAGAAGATGTGATAGGAAAGGTTGAGG
1 AGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATAGGAAAGGTTGAGG
* * * *
26371422 CCGTAACGGCGAACCCGATACCATGAAGATGTAA
66 CCGCAACGGCGAACCCGGTACCAAGAAGATGTGA
26371456 AGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATAGGAAAGGTTGAGG
1 AGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATAGGAAAGGTTGAGG
* * *
26371521 CCGCAACGGTGAACCCGGTATCATGAAGA-GATGA
66 CCGCAACGGCGAACCCGGTACCAAGAAGATG-TGA
* * * * * *
26371555 AGGG-AAGGACTGAGGCCGCGACGGTAAATCCAGTACCTTAA-AAGATGTGATGGGAAAGGTTGA
1 AGGGAAAGG-TTGAGGCCGCAACGGTGAACCCGGTACC-TAAGAAGATGTGATAGGAAAGGTTGA
* **
26371618 GGCCGCAACGGCGAACCCGGTACCACGAAGATACGA
64 GGCCGCAACGGCGAACCCGGTACCAAGAAGATGTGA
* * ** * *** *
26371654 AGGGAAAGGTTGAGGCCGTAATGACGAACTCGGTACCTAAGAAGATGTGGCGGGCAAGGTTGAGG
1 AGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATAGGAAAGGTTGAGG
* ** ** ** * * *
26371719 TCAAAATAGTAAACTCGGTACTAGGAAGA-GATGA
66 CCGCAACGGCGAACCCGGTACCAAGAAGATG-TGA
* * * * *
26371753 AGGG-AAGGATTGAGGCTGCGACGGTGAATCCGGTACCTTAGAAGATGTGATGGGAAAGGTTGAG
1 AGGGAAAGG-TTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATAGGAAAGGTTGAG
* * *
26371817 GTCGCAACGGTGAACCTGGTACCTAAGAAGATGTGA
65 GCCGCAACGGCGAACCCGGTACC-AAGAAGATGTGA
* ** ** * *
26371853 TGGGAAAGGTTGAGGTGGCAACGACGAACCCGGTACC-ATGAAGA-GATGA-AGGGAAGGATTGA
1 AGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATG-TGATAGGAAAGG-TTGA
* * * * * ** *
26371915 GGCCCCGACGGTGAATCCGATACTTTAGAAGATGTGG
64 GGCCGCAACGGCGAACCCGGTAC-CAAGAAGATGTGA
* *
26371952 TGGGAAAGGTTAAGGCC
1 AGGGAAAGGTTGAGGCC
26371969 ATAATGACAA
Statistics
Matches: 486, Mismatches: 110, Indels: 33
0.77 0.17 0.05
Matches are distributed among these distances:
98 19 0.04
99 354 0.73
100 107 0.22
101 6 0.01
ACGTcount: A:0.32, C:0.16, G:0.34, T:0.17
Consensus pattern (99 bp):
AGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATAGGAAAGGTTGAGG
CCGCAACGGCGAACCCGGTACCAAGAAGATGTGA
Found at i:26371663 original size:198 final size:197
Alignment explanation
Indices: 26371390--26371938 Score: 638
Period size: 198 Copynumber: 2.8 Consensus size: 197
26371380 GCGAACTCGA
* * * *
26371390 TACC-TAAGAAGATGTGATAGGAAAGGTTGAGGCCGTAACGGCGAACCCGATACCATGAAGATGT
1 TACCTTAA-AAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCAAGAAGATGT
* **
26371454 AAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATAGGAAAGGTTGA
65 GAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTAAGAAGATGTGA-AGGAAAGGTTGA
* *
26371519 GGCCGCAACGGTGAACCCGGTA-TCATGAAGAGATGAAGGGAAGGACTGAGGCCGCGACGGTAAA
129 GGCCACAACGGTGAACCCGGTACT-AGGAAGAGATGAAGGGAAGGACTGAGGCCGCGACGGTAAA
26371583 TCCAG
193 TCCAG
* **
26371588 TACCTTAAAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCACGAAGATACG
1 TACCTTAAAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCAAGAAGATGTG
* * * ** *
26371653 AAGGGAAAGGTTGAGGCCGTAATGACGAACTCGGTACCTAAGAAGATGTGGCGGGCAAGGTTGAG
66 AAGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTAAGAAGATGT-GAAGGAAAGGTTGAG
* * ** * * * * *
26371718 GTCAAAATAGTAAACTCGGTACTAGGAAGAGATGAAGGGAAGGATTGAGGCTGCGACGGTGAATC
130 GCCACAACGGTGAACCCGGTACTAGGAAGAGATGAAGGGAAGGACTGAGGCCGCGACGGTAAATC
*
26371783 CGG
195 CAG
* * * *
26371786 TACCTTAGAAGATGTGATGGGAAAGGTTGAGGTCGCAACGGTGAACCTGGTACCTAAGAAGATGT
1 TACCTTAAAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACC-AAGAAGATGT
* ** * *
26371851 GATGGGAAAGGTTGAGGTGGCAACGACGAACCCGGTACC-ATGAAGA-GATGAAGGGAAGGATTG
65 GAAGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTAAGAAGATG-TGAAGGAAAGG-TTG
* * * *
26371914 AGGCCCCGACGGTGAATCCGATACT
128 AGGCCACAACGGTGAACCCGGTACT
26371939 TTAGAAGATG
Statistics
Matches: 291, Mismatches: 54, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
197 8 0.03
198 238 0.82
199 45 0.15
ACGTcount: A:0.32, C:0.17, G:0.34, T:0.17
Consensus pattern (197 bp):
TACCTTAAAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCAAGAAGATGTG
AAGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTAAGAAGATGTGAAGGAAAGGTTGAGG
CCACAACGGTGAACCCGGTACTAGGAAGAGATGAAGGGAAGGACTGAGGCCGCGACGGTAAATCC
AG
Found at i:26371868 original size:149 final size:149
Alignment explanation
Indices: 26371298--26372016 Score: 585
Period size: 149 Copynumber: 4.8 Consensus size: 149
26371288 GGTACCTTAA
* ** **
26371298 AAGATGTGAAGGGAAAGTTTGAGGCCGCAACGACGAACCCAATACCTAAGAAGATGTGATGGGAA
1 AAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATGGGAA
* * ** * * **
26371363 AGGTTGAGGCTGTAATAGCGAACTCGATACCTAAGAAGATGTGATAGGAAAGGTTGAGGCCGTAA
66 AGGTTGAGGCCGCAACGGCGAACTCGGTACCTAAGAAGATGTGATGGGAAAGGTTGAGGCCAAAA
** *
26371428 CGGCGAACCCGATACCATG
131 CGGTAAACCCGGTACCATG
* *
26371447 AAGATGTAAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATAGGAA
1 AAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATGGGAA
* * * * * * **
26371512 AGGTTGAGGCCGCAACGGTGAACCCGGTATC-ATGAAGA-GATGAAGGG-AAGGACTGAGGCCGC
66 AGGTTGAGGCCGCAACGGCGAACTCGGTACCTAAGAAGATG-TGATGGGAAAGG-TTGAGGCCAA
* * * * *
26371574 GACGGTAAATCCAGTACCTTAA
129 AACGGTAAACCCGGTACCAT-G
* * * ** *
26371596 AAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACC-ACGAAGATACGAAGGGAA
1 AAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATGGGAA
* * * ** * *
26371660 AGGTTGAGGCCGTAATGACGAACTCGGTACCTAAGAAGATGTGGCGGGCAAGGTTGAGGTCAAAA
66 AGGTTGAGGCCGCAACGGCGAACTCGGTACCTAAGAAGATGTGATGGGAAAGGTTGAGGCCAAAA
** * * *
26371725 TAGTAAACTCGGTACTAGG
131 CGGTAAACCCGGTACCATG
* * * *
26371744 AAGA-GATGAAGGG-AAGGATTGAGGCTGCGACGGTGAATCCGGTACCTTAGAAGATGTGATGGG
1 AAGATG-TGAAGGGAAAGG-TTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATGGG
* * ***
26371807 AAAGGTTGAGGTCGCAACGGTGAAC-CTGGTACCTAAGAAGATGTGATGGGAAAGGTTGAGGTGG
64 AAAGGTTGAGGCCGCAACGGCGAACTC-GGTACCTAAGAAGATGTGATGGGAAAGGTTGAGGCCA
* ***
26371871 CAACGACGAACCCGGTACCATG
128 AAACGGTAAACCCGGTACCATG
* * * * * * *
26371893 AAGA-GATGAAGGG-AAGGATTGAGGCCCCGACGGTGAATCCGATACTTTAGAAGATGTGGTGGG
1 AAGATG-TGAAGGGAAAGG-TTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATGGG
* ** * * * * * * *
26371956 AAAGGTTAAGGCCATAATGACAAACTCGGTGCC-ATGAAGATATGAAGGGAAAGGTTGAGGC
64 AAAGGTTGAGGCCGCAACGGCGAACTCGGTACCTAAGAAGATGTGATGGGAAAGGTTGAGGC
26372017 AGTAACGACA
Statistics
Matches: 453, Mismatches: 106, Indels: 23
0.78 0.18 0.04
Matches are distributed among these distances:
147 10 0.02
148 129 0.28
149 308 0.68
150 6 0.01
ACGTcount: A:0.33, C:0.16, G:0.34, T:0.17
Consensus pattern (149 bp):
AAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAGAAGATGTGATGGGAA
AGGTTGAGGCCGCAACGGCGAACTCGGTACCTAAGAAGATGTGATGGGAAAGGTTGAGGCCAAAA
CGGTAAACCCGGTACCATG
Found at i:26372041 original size:248 final size:248
Alignment explanation
Indices: 26371587--26372043 Score: 521
Period size: 248 Copynumber: 1.8 Consensus size: 248
26371577 GGTAAATCCA
* *
26371587 GTACCTTAAAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCACGAAGATAC
1 GTACCTTAAAAGATGTGATGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCACGAAGAGAC
** * * * *
26371652 GAAGGGAAAGGTTGAGGCCGTAATGACGAACTCGGTACCTAAGAAGATGTGGCGGGCAAGGTTGA
66 GAAGGGAAAGGTTGAGGCCCCAACGACGAACTCGATACCTAAGAAGATGTGGCGGGAAAGGTTAA
* * * * * ** *
26371717 GGTCAAAATAGTAAACTCGGTACTAGGAAGAGATGAAGGGAAGGATTGAGGCTGCGACGGTGAAT
131 GGCCAAAATAGCAAACTCGGTACCAGGAAGAGATGAAGGGAAGGATTGAGGCAGCAACGGACAAA
* *
26371782 CCGGTACCTTAGAAGATGTGATGGGAAAGGTTGAGGTCGCAACGGTGAACCTG
196 CCAGCACCTTAGAAGATGTGATGGGAAAGGTTGAGGTCGCAACGGTGAACCTG
** *
26371835 GTACC-TAAGAAGATGTGATGGGAAAGGTTGAGGTGGCAACGACGAACCCGGTACCATGAAGAGA
1 GTACCTTAA-AAGATGTGATGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCACGAAGAGA
* * ** * * *
26371899 TGAAGGG-AAGGATTGAGGCCCCGACGGTGAA-TCCGATACTTTAGAAGATGTGGTGGGAAAGGT
65 CGAAGGGAAAGG-TTGAGGCCCCAACGACGAACT-CGATACCTAAGAAGATGTGGCGGGAAAGGT
* * * * *
26371962 TAAGGCCATAAT-GACAAACTCGGTGCCATGAAGATATGAAGGGAAAGG-TTGAGGCAGTAAC-G
128 TAAGGCCAAAATAG-CAAACTCGGTACCAGGAAGAGATGAAGGG-AAGGATTGAGGCAGCAACGG
26372024 ACAAACCTAGCACCTTAGAA
191 ACAAACC-AGCACCTTAGAA
26372044 ATGCGACGAG
Statistics
Matches: 170, Mismatches: 33, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
247 14 0.08
248 152 0.89
249 4 0.02
ACGTcount: A:0.33, C:0.16, G:0.34, T:0.18
Consensus pattern (248 bp):
GTACCTTAAAAGATGTGATGGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCACGAAGAGAC
GAAGGGAAAGGTTGAGGCCCCAACGACGAACTCGATACCTAAGAAGATGTGGCGGGAAAGGTTAA
GGCCAAAATAGCAAACTCGGTACCAGGAAGAGATGAAGGGAAGGATTGAGGCAGCAACGGACAAA
CCAGCACCTTAGAAGATGTGATGGGAAAGGTTGAGGTCGCAACGGTGAACCTG
Found at i:26372408 original size:39 final size:38
Alignment explanation
Indices: 26372321--26372854 Score: 225
Period size: 39 Copynumber: 13.7 Consensus size: 38
26372311 AAAGATTTCG
* * * * * * *
26372321 ATCTCTTACCCCTATCATGGGGCAGATCACAATCATTCG
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATTA-CCA
* *
26372360 ATCTTTTACCCCGAGCCTAGGGCAGATCACCATTAGCCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATTA-CCA
* * *
26372399 ATCTCTTACCTCGAGCCTGGGGTAGATTGCAGCCA-T-CCG
1 ATCTCTTACCCCGAGCCTGGGGCAGA-T-CA-CCATTACCA
* *
26372438 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATTA-CCA
* * *
26372477 ATCTCTTACCCCGAGCTTGGGACAGATTGCAGCCA-T-CCG
1 ATCTCTTACCCCGAGCCTGGGGCAGA-T-CA-CCATTACCA
* * ** * *
26372516 ATCTCTTACCCTGAGCTTGGGATAGATCACTATCAACCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCAT-TACCA
* * * *
26372555 ATCTCTTACCCCAAGCCTGGGGCAAATTGTAGCCA-T-CCG
1 ATCTCTTACCCCGAGCCTGGGGCAGA-T-CA-CCATTACCA
* * * * *
26372594 ATCTTTTACCCCGAGCTTGGAGCAGATCACTATTAGCTA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATTA-CCA
* * *
26372633 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCGTT--CG
1 ATCTCTTACCCCGAGCCTGGGGCAGA-T-CA-CCATTACCA
* * * *
26372672 ATCTTTTACCCTGAGCCTAGGGTAGATCACCA-T-CCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATTACCA
* * * *
26372708 TTCGATCTTATACCCCGAGCTTGGGGCAGATTGTAGCCA-T-CCG
1 ATC--TC-T-TACCCCGAGCCTGGGGCAGA-T-CA-CCATTACCA
* * * * *
26372751 ATCTTTTATCCTGAGCCTGAGGCAGATTGCAGCCA-T-CCG
1 ATCTCTTACCCCGAGCCTGGGGCAGA-T-CA-CCATTACCA
* * * * *
26372790 ATCTTTTACCCCGAGCTTGGGGCAAATCACTATCAACCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCAT-TACCA
*
26372829 ATCTCTTTCCCCGAGCCT-GGGCAGAT
1 ATCTCTTACCCCGAGCCTGGGGCAGAT
26372855 TGTAACCATT
Statistics
Matches: 374, Mismatches: 89, Indels: 65
0.71 0.17 0.12
Matches are distributed among these distances:
35 1 0.00
36 14 0.04
37 9 0.02
38 13 0.03
39 287 0.77
40 21 0.06
41 9 0.02
42 12 0.03
43 8 0.02
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (38 bp):
ATCTCTTACCCCGAGCCTGGGGCAGATCACCATTACCA
Found at i:26372450 original size:78 final size:78
Alignment explanation
Indices: 26372358--26372777 Score: 479
Period size: 78 Copynumber: 5.4 Consensus size: 78
26372348 CACAATCATT
* * *
26372358 CGATCTTTTACCCCGAGCCTAGGGCAGATCACCATTAGCCAATCTCTTACCTCGAGCCTGGGGTA
1 CGATCTTTTACCCCGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGCA
*
26372423 GATTGCAGCCATC
66 GATTGTAGCCATC
* * * * *
26372436 CGATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCTTGGGACA
1 CGATCTTTTACCCCGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGCA
*
26372501 GATTGCAGCCATC
66 GATTGTAGCCATC
* * * * * * *
26372514 CGATCTCTTACCCTGAG-CTTGGGATAGATCACTATCAACCAATCTCTTACCCCAAGCCTGGGGC
1 CGATCTTTTACCCCGAGCCTAGGG-CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGC
*
26372578 AAATTGTAGCCATC
65 AGATTGTAGCCATC
* * * *
26372592 CGATCTTTTACCCCGAG-CTTGGAGCAGATCACTATTAGCTAATCTCTTACCCCGAGCCTGGGGC
1 CGATCTTTTACCCCGAGCCTAGG-GCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGC
* *
26372656 AGATTGTAGCCGTT
65 AGATTGTAGCCATC
* * ** * *
26372670 CGATCTTTTACCCTGAGCCTAGGGTAGATCACCATCCATTCGATCT-TATACCCCGAGCTTGGGG
1 CGATCTTTTACCCCGAGCCTAGGGCAGATCACCAT-CAGCCAATCTCT-TACCCCGAGCCTGGGG
26372734 CAGATTGTAGCCATC
64 CAGATTGTAGCCATC
* *
26372749 CGATCTTTTATCCTGAGCCT-GAGGCAGAT
1 CGATCTTTTACCCCGAGCCTAG-GGCAGAT
26372778 TGCAGCCATC
Statistics
Matches: 293, Mismatches: 43, Indels: 11
0.84 0.12 0.03
Matches are distributed among these distances:
77 4 0.01
78 226 0.77
79 63 0.22
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (78 bp):
CGATCTTTTACCCCGAGCCTAGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGCA
GATTGTAGCCATC
Found at i:26373545 original size:17 final size:17
Alignment explanation
Indices: 26373519--26373595 Score: 111
Period size: 17 Copynumber: 4.6 Consensus size: 17
26373509 TGAACACAAT
*
26373519 TTTAAA-TTATTTTAAG
1 TTTAAATTTATTTTAAA
26373535 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* * *
26373552 TTTAAACTTATTTTGAG
1 TTTAAATTTATTTTAAA
26373569 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
26373586 TTTAAATTTA
1 TTTAAATTTA
26373596 ATTAAAAAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
16 6 0.11
17 47 0.89
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:26373563 original size:34 final size:33
Alignment explanation
Indices: 26373519--26373593 Score: 132
Period size: 34 Copynumber: 2.2 Consensus size: 33
26373509 TGAACACAAT
26373519 TTTAAATTATTTTAAGTTTAAATTTATTTTAAA
1 TTTAAATTATTTTAAGTTTAAATTTATTTTAAA
*
26373552 TTTAAACTTATTTTGAGTTTAAATTTATTTTAAA
1 TTTAAA-TTATTTTAAGTTTAAATTTATTTTAAA
26373586 TTTAAATT
1 TTTAAATT
26373594 TAATTAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
33 8 0.20
34 32 0.80
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.57
Consensus pattern (33 bp):
TTTAAATTATTTTAAGTTTAAATTTATTTTAAA
Found at i:26373598 original size:5 final size:6
Alignment explanation
Indices: 26373529--26373596 Score: 52
Period size: 6 Copynumber: 11.8 Consensus size: 6
26373519 TTTAAATTAT
* * * * * *
26373529 TTTAAG TTTAAA TTT-AT TTTAAA TTTAAA CTT-AT TTTGAG TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
26373575 TTT-AT TTTAAA TTTAAA TTTAA
1 TTTAAA TTTAAA TTTAAA TTTAA
26373597 TTAAAAAAGG
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
5 11 0.23
6 37 0.77
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:26374948 original size:30 final size:30
Alignment explanation
Indices: 26374878--26375196 Score: 279
Period size: 30 Copynumber: 10.7 Consensus size: 30
26374868 TAGCCTCTAA
**
26374878 TTTTTTAAAATTATATTTT-AGCCTTTAAA-
1 TTTTTTAAAATTATATTTTGA-CCCCTAAAC
* *
26374907 TTTTGTAAAATTATATTTTGACCCTTAAAC
1 TTTTTTAAAATTATATTTTGACCCCTAAAC
* *
26374937 TTTTTTAAAATTACATTTTGATCCCTAAAAC
1 TTTTTTAAAATTATATTTTGACCCCT-AAAC
* *
26374968 TTTCTTAAAATTACATTTTGACCCCTAAAC
1 TTTTTTAAAATTATATTTTGACCCCTAAAC
* * *
26374998 TTCTTTAAAATTATATTTTGACTCATAAAC
1 TTTTTTAAAATTATATTTTGACCCCTAAAC
* * * * *
26375028 TTTTTAAAAATCACATTTTAACCCCCAAAC
1 TTTTTTAAAATTATATTTTGACCCCTAAAC
* ** *
26375058 TTCTCCAAAATTATATTTTGACACCTAAAC
1 TTTTTTAAAATTATATTTTGACCCCTAAAC
* * *
26375088 -TTTTTAAAATCACATTTTAACCCCTAAAC
1 TTTTTTAAAATTATATTTTGACCCCTAAAC
*
26375117 TTTTCTAAAATT-TCATTTTGACCCCTAAAC
1 TTTTTTAAAATTAT-ATTTTGACCCCTAAAC
** ** * *
26375147 TTTTCCAAAATTGCATTTT-AACCTTAAAC
1 TTTTTTAAAATTATATTTTGACCCCTAAAC
** *
26375176 TTTTCCAAAATTATGTTTTGA
1 TTTTTTAAAATTATATTTTGA
26375197 TCTAGAATTC
Statistics
Matches: 236, Mismatches: 47, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
29 71 0.30
30 137 0.58
31 28 0.12
ACGTcount: A:0.35, C:0.18, G:0.03, T:0.43
Consensus pattern (30 bp):
TTTTTTAAAATTATATTTTGACCCCTAAAC
Found at i:26375127 original size:59 final size:59
Alignment explanation
Indices: 26374847--26375196 Score: 324
Period size: 59 Copynumber: 5.9 Consensus size: 59
26374837 AGGACTTTCG
* * * * *
26374847 AACTTTTCTAAAATTTCATTTTAGCCTCT-AA-TTTTTTAAAATTATATTTT-AGCCTTTA
1 AACTTTTCTAAAATTACATTTTAACCCCTAAACTTTTCTAAAATTATATTTTGA-CC-CTA
* * * * * *
26374905 AA-TTTTGTAAAATTATATTTTGACCCTTAAACTTTTTTAAAATTACATTTTGATCCCTAA
1 AACTTTTCTAAAATTACATTTTAACCCCTAAACTTTTCTAAAATTATATTTTGA-CCCT-A
* *
26374965 AAC-TTTCTTAAAATTACATTTTGACCCCTAAACTTCTT-TAAAATTATATTTTGACTCATA
1 AACTTTTC-TAAAATTACATTTTAACCCCTAAACTT-TTCTAAAATTATATTTTGAC-CCTA
* * * *
26375025 AACTTTT-TAAAAATCACATTTTAACCCCCAAACTTCTCCAAAATTATATTTTGACACCTA
1 AACTTTTCT-AAAATTACATTTTAACCCCTAAACTTTTCTAAAATTATATTTTGAC-CCTA
*
26375085 AACTTTT-TAAAATCACATTTTAACCCCTAAACTTTTCTAAAATT-TCATTTTGACCCCTA
1 AACTTTTCTAAAATTACATTTTAACCCCTAAACTTTTCTAAAATTAT-ATTTTGA-CCCTA
* * * * *
26375144 AACTTTTCCAAAATTGCATTTTAA-CCTTAAACTTTTCCAAAATTATGTTTTGA
1 AACTTTTCTAAAATTACATTTTAACCCCTAAACTTTTCTAAAATTATATTTTGA
26375197 TCTAGAATTC
Statistics
Matches: 246, Mismatches: 31, Indels: 29
0.80 0.10 0.09
Matches are distributed among these distances:
57 19 0.08
58 5 0.02
59 96 0.39
60 79 0.32
61 45 0.18
62 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.43
Consensus pattern (59 bp):
AACTTTTCTAAAATTACATTTTAACCCCTAAACTTTTCTAAAATTATATTTTGACCCTA
Found at i:26377180 original size:19 final size:18
Alignment explanation
Indices: 26377146--26377185 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
26377136 AATTTAAATG
*
26377146 TTTTTTAATTTTAATTAA
1 TTTTTTAATTTAAATTAA
*
26377164 TTTTTTAAGTTTAAATTCA
1 TTTTTTAA-TTTAAATTAA
26377183 TTT
1 TTT
26377186 GCTGATGTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (18 bp):
TTTTTTAATTTAAATTAA
Found at i:26381480 original size:17 final size:17
Alignment explanation
Indices: 26381458--26381496 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26381448 AGGTGGAGAA
* *
26381458 CTTGTTCATTGAGAGTT
1 CTTGTTCATAGAGAATT
*
26381475 CTTGTTCGTAGAGAATT
1 CTTGTTCATAGAGAATT
26381492 CTTGT
1 CTTGT
26381497 CAAGGTGAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.13, G:0.23, T:0.46
Consensus pattern (17 bp):
CTTGTTCATAGAGAATT
Found at i:26381550 original size:41 final size:41
Alignment explanation
Indices: 26381486--26381576 Score: 137
Period size: 41 Copynumber: 2.2 Consensus size: 41
26381476 TTGTTCGTAG
* *
26381486 AGAATTCTTGTCAAGGTGAAGATTGTTAGAATTGGGTGACT
1 AGAATTCTTATCAAGGTGAAGATTGTTAGAATTGAGTGACT
* * *
26381527 AGAATTCTTATTAGGGTGGAGATTGTTAGAATTGAGTGACT
1 AGAATTCTTATCAAGGTGAAGATTGTTAGAATTGAGTGACT
26381568 AGAATTCTT
1 AGAATTCTT
26381577 GTTAAAATAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (41 bp):
AGAATTCTTATCAAGGTGAAGATTGTTAGAATTGAGTGACT
Found at i:26383460 original size:21 final size:20
Alignment explanation
Indices: 26383430--26383487 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
26383420 CCCATGCAGA
*
26383430 AAAGTTCCAAAATCAAAATCC
1 AAAG-TCCAAAATCAAAAACC
* *
26383451 GAAGTCCCAAAAGCAAAAACC
1 AAAGT-CCAAAATCAAAAACC
26383472 AAAGTCCAAAATCAAA
1 AAAGTCCAAAATCAAA
26383488 GTCCATAGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 11 0.35
21 20 0.65
ACGTcount: A:0.55, C:0.24, G:0.09, T:0.12
Consensus pattern (20 bp):
AAAGTCCAAAATCAAAAACC
Found at i:26385975 original size:25 final size:24
Alignment explanation
Indices: 26385898--26385978 Score: 73
Period size: 25 Copynumber: 3.5 Consensus size: 24
26385888 TGGGTTTGGT
26385898 TTGGTTTTTAAAGGGTTTGGGTTA
1 TTGGTTTTTAAAGGGTTTGGGTTA
* *
26385922 TTGG--GTTCAA--GTTTGGGCTTA
1 TTGGTTTTTAAAGGGTTTGGG-TTA
*
26385943 -AGGATTTTTAAAGGGTTTGGGTTA
1 TTGG-TTTTTAAAGGGTTTGGGTTA
26385967 TTTGGTTTTTAA
1 -TTGGTTTTTAA
26385979 TTCTTATTCA
Statistics
Matches: 43, Mismatches: 6, Indels: 15
0.67 0.09 0.23
Matches are distributed among these distances:
20 9 0.21
21 3 0.07
22 4 0.09
23 4 0.09
24 7 0.16
25 14 0.33
26 2 0.05
ACGTcount: A:0.19, C:0.02, G:0.31, T:0.48
Consensus pattern (24 bp):
TTGGTTTTTAAAGGGTTTGGGTTA
Found at i:26388287 original size:14 final size:14
Alignment explanation
Indices: 26388268--26388305 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
26388258 TCTAAGGTTG
26388268 TTTGATTGAAGATA
1 TTTGATTGAAGATA
26388282 TTTGATTGAAGATA
1 TTTGATTGAAGATA
*
26388296 TTTGCTTGAA
1 TTTGATTGAA
26388306 AGTGCTTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.32, C:0.03, G:0.21, T:0.45
Consensus pattern (14 bp):
TTTGATTGAAGATA
Found at i:26400768 original size:42 final size:42
Alignment explanation
Indices: 26400673--26401048 Score: 524
Period size: 42 Copynumber: 9.2 Consensus size: 42
26400663 TACCAACCAG
*
26400673 TCTCTTACCCCGACCATGGGACAGATTGAAG-C--CATCCAA
1 TCTCTTACCCCGACCATGGGGCAGATTGAAGACATCATCCAA
*
26400712 TCTCTTACCCCGACCATGGGGTAGATTGAAGACATCATCCAA
1 TCTCTTACCCCGACCATGGGGCAGATTGAAGACATCATCCAA
*
26400754 TCTCTTACCTCGACCATGGGGCAGATTGAAG-C--CATCCAA
1 TCTCTTACCCCGACCATGGGGCAGATTGAAGACATCATCCAA
* *
26400793 TCTCTTACCCCGACCATAGGACAGATTGAAGACATCATCCAA
1 TCTCTTACCCCGACCATGGGGCAGATTGAAGACATCATCCAA
* * *
26400835 TCTCTTACCTCGACCATGGGGTAGATT-AA-A-ACCATCCAA
1 TCTCTTACCCCGACCATGGGGCAGATTGAAGACATCATCCAA
* *
26400874 TCTGTTACCTCGACCATGGGGCAGATTGAAGACATCATCCAA
1 TCTCTTACCCCGACCATGGGGCAGATTGAAGACATCATCCAA
* *
26400916 TCTCTTACCTCGACCATAGGGCAGATTGAAG-C--CATCCAA
1 TCTCTTACCCCGACCATGGGGCAGATTGAAGACATCATCCAA
* *
26400955 TCTCTTACCCCGACCATGGGGCAAATTGAAGACATCATCTAA
1 TCTCTTACCCCGACCATGGGGCAGATTGAAGACATCATCCAA
* *
26400997 TCTCTTACCCCGACCATGGGGCAGATTAAAGACATCATTCAA
1 TCTCTTACCCCGACCATGGGGCAGATTGAAGACATCATCCAA
26401039 TCTCTTACCC
1 TCTCTTACCC
26401049 TAATGATAGC
Statistics
Matches: 300, Mismatches: 25, Indels: 21
0.87 0.07 0.06
Matches are distributed among these distances:
39 132 0.44
40 6 0.02
41 5 0.02
42 157 0.52
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (42 bp):
TCTCTTACCCCGACCATGGGGCAGATTGAAGACATCATCCAA
Found at i:26400768 original size:81 final size:81
Alignment explanation
Indices: 26400673--26401048 Score: 581
Period size: 81 Copynumber: 4.6 Consensus size: 81
26400663 TACCAACCAG
* * *
26400673 TCTCTTACCCCGACCATGGGACAGATTGAAGCCATCCAATCTCTTACCCCGACCATGGGGTAGAT
1 TCTCTTACCTCGACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGGGGCAGAT
26400738 TGAAGACATCATCCAA
66 TGAAGACATCATCCAA
* *
26400754 TCTCTTACCTCGACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATAGGACAGAT
1 TCTCTTACCTCGACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGGGGCAGAT
26400819 TGAAGACATCATCCAA
66 TGAAGACATCATCCAA
* * * * *
26400835 TCTCTTACCTCGACCATGGGGTAGATTAAAACCATCCAATCTGTTACCTCGACCATGGGGCAGAT
1 TCTCTTACCTCGACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGGGGCAGAT
26400900 TGAAGACATCATCCAA
66 TGAAGACATCATCCAA
* *
26400916 TCTCTTACCTCGACCATAGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGGGGCAAAT
1 TCTCTTACCTCGACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGGGGCAGAT
*
26400981 TGAAGACATCATCTAA
66 TGAAGACATCATCCAA
* * *
26400997 TCTCTTACCCCGACCATGGGGCAGATTAAAGACATCATTCAATCTCTTACCC
1 TCTCTTACCTCGACCATGGGGCAGATTGAAG-C--CATCCAATCTCTTACCC
26401049 TAATGATAGC
Statistics
Matches: 268, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
81 251 0.94
82 1 0.00
84 16 0.06
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (81 bp):
TCTCTTACCTCGACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGGGGCAGAT
TGAAGACATCATCCAA
Found at i:26404001 original size:18 final size:18
Alignment explanation
Indices: 26403978--26404028 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
26403968 CATAGTAATA
26403978 TCAGATGCAGTCACATGC
1 TCAGATGCAGTCACATGC
* *
26403996 TCAGATGTAATCACATGC
1 TCAGATGCAGTCACATGC
*
26404014 TC-GTATGCAGCCACA
1 TCAG-ATGCAGTCACA
26404029 GCAGGATGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 1 0.04
18 26 0.96
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (18 bp):
TCAGATGCAGTCACATGC
Found at i:26406974 original size:12 final size:12
Alignment explanation
Indices: 26406957--26406982 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26406947 TGCCGATGTT
26406957 GTCAATTATTTG
1 GTCAATTATTTG
26406969 GTCAATTATTTG
1 GTCAATTATTTG
26406981 GT
1 GT
26406983 GTATGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.19, T:0.50
Consensus pattern (12 bp):
GTCAATTATTTG
Found at i:26407750 original size:24 final size:24
Alignment explanation
Indices: 26407709--26407755 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
26407699 GTTAAGAGTA
* *
26407709 AAAATTGTCAGTGTAAATGTAATAT
1 AAAATTGTCAGAGCAAAT-TAATAT
26407734 AAAA-TGTCAGAGCAAATTAATA
1 AAAATTGTCAGAGCAAATTAATA
26407756 AAAGATGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 11 0.55
25 4 0.20
ACGTcount: A:0.49, C:0.06, G:0.15, T:0.30
Consensus pattern (24 bp):
AAAATTGTCAGAGCAAATTAATAT
Found at i:26424553 original size:24 final size:24
Alignment explanation
Indices: 26424512--26424558 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
26424502 GTTAAGAGTA
* *
26424512 AAAATTGTCAGTGTAAATGTAATAT
1 AAAATTGTCAGAGCAAAT-TAATAT
26424537 AAAA-TGTCAGAGCAAATTAATA
1 AAAATTGTCAGAGCAAATTAATA
26424559 AAAGATGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 11 0.55
25 4 0.20
ACGTcount: A:0.49, C:0.06, G:0.15, T:0.30
Consensus pattern (24 bp):
AAAATTGTCAGAGCAAATTAATAT
Found at i:26428436 original size:12 final size:12
Alignment explanation
Indices: 26428419--26428443 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26428409 GGGTATCGAG
26428419 GAAGAAAAAGAA
1 GAAGAAAAAGAA
26428431 GAAGAAAAAGAA
1 GAAGAAAAAGAA
26428443 G
1 G
26428444 TAGGAGAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAAAAGAA
Found at i:26431307 original size:38 final size:38
Alignment explanation
Indices: 26431255--26431351 Score: 185
Period size: 38 Copynumber: 2.6 Consensus size: 38
26431245 TACTTGCATG
*
26431255 GGGCAGATTGAAGCCATCCAAACTCTTATCCCGACCAT
1 GGGCAGATTTAAGCCATCCAAACTCTTATCCCGACCAT
26431293 GGGCAGATTTAAGCCATCCAAACTCTTATCCCGACCAT
1 GGGCAGATTTAAGCCATCCAAACTCTTATCCCGACCAT
26431331 GGGCAGATTTAAGCCATCCAA
1 GGGCAGATTTAAGCCATCCAA
26431352 TCTTTTACAC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (38 bp):
GGGCAGATTTAAGCCATCCAAACTCTTATCCCGACCAT
Found at i:26432987 original size:216 final size:218
Alignment explanation
Indices: 26432688--26433239 Score: 613
Period size: 216 Copynumber: 2.5 Consensus size: 218
26432678 TGTATTGCTT
* * * * *
26432688 TTTTTAATACATAAATTGTTTTAAAACAACAAAGTAATTTTCTTTTATTTTAGGGAATTTGA-AA
1 TTTTTAATACATAAATTGTTTTAAAA-AATAAAGCAATGTTATTTTATTTTAGGGAATTCGAGAA
* * * **
26432752 AGTG-GTGCCTTAACGTGTTGGGTACGATTTTTCTTCGAACCTAAATAATCAAATATCCTATTTT
65 ATTGTGT-CCCTAACGTGTTGGGTACGATTTTTCTTTGAACCTAAATAATCAAATATCCT-CCTT
* * * * *
26432816 AAATTGATAA-T-CGTCATTT-TTACTTGTACATTAC-TTG-GATTTATCCATCTTTTGCAGAAC
128 AAATTGATAATTCCGTCATTTGTTACTTATAAATTACATAGTGATTTATCCATATTTTACAGAAC
*
26432876 ATTTCTAACAAAATAAA-ATGTATATCG
193 ATTT-TAACAAAATAAATA-GCATATCG
26432903 TTCTTTATATACATAAATTGTTTT-AAAAATAAAGACAATGTTATTTTATTTTAGGGAATTCGAG
1 TT-TTTA-ATACATAAATTGTTTTAAAAAATAAAG-CAATGTTATTTTATTTTAGGGAATTCGAG
* * ** *
26432967 AAATTGTGT-CCTAACGTGTTGGATACGATTTTTCTTTTAACCTAAATAATTGAGTATCCTCCTT
63 AAATTGTGTCCCTAACGTGTTGGGTACGATTTTTCTTTGAACCTAAATAATCAAATATCCTCCTT
* ** ** *
26433031 AAATTGATAATTGCCTTTTTTTGTTTTTTATAAATTACATAGTTATTTATCCATATTTTACAGAA
128 AAATTGATAATT-CCGTCATTTGTTACTTATAAATTACATAGTGATTTATCCATATTTTACAGAA
26433096 CATTTTAACAAAATAAATAGCATATCG
192 CATTTTAACAAAATAAATAGCATATCG
*
26433123 TTTTTAAAATACATAAATTGTTTTAGGAAAAATTAAGGCAATGTTATTTTATTTTAGGGAATTCG
1 TTTTT--AATACATAAATTGTTTTA--AAAAA-TAAAGCAATGTTATTTTATTTTAGGGAATTCG
* * * *
26433188 AGAAATAGT-TCCCTAATGTGTTGAGTATGATTTTTCTTTGAACCTAAATAAT
61 AGAAATTGTGTCCCTAACGTGTTGGGTACGATTTTTCTTTGAACCTAAATAAT
26433240 TGAGTATCCT
Statistics
Matches: 284, Mismatches: 34, Indels: 30
0.82 0.10 0.09
Matches are distributed among these distances:
215 20 0.07
216 76 0.27
217 21 0.07
218 7 0.02
219 14 0.05
220 39 0.14
221 26 0.09
222 1 0.00
223 76 0.27
224 4 0.01
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.42
Consensus pattern (218 bp):
TTTTTAATACATAAATTGTTTTAAAAAATAAAGCAATGTTATTTTATTTTAGGGAATTCGAGAAA
TTGTGTCCCTAACGTGTTGGGTACGATTTTTCTTTGAACCTAAATAATCAAATATCCTCCTTAAA
TTGATAATTCCGTCATTTGTTACTTATAAATTACATAGTGATTTATCCATATTTTACAGAACATT
TTAACAAAATAAATAGCATATCG
Found at i:26433240 original size:223 final size:221
Alignment explanation
Indices: 26432693--26433256 Score: 634
Period size: 223 Copynumber: 2.6 Consensus size: 221
26432683 TGCTTTTTTT
* * * * * *
26432693 AATACATAAATTGTTTTAAAACAACAAAG-TAATTTTCTTTTATTTTAGGGAATTTGA-AAAGTG
1 AATACATAAATTGTTTT-AAA-AATAAAGACAATGTTATTTTATTTTAGGGAATTCGAGAAA-TA
* * ** * *
26432756 GTG-CCTTAACGTGTTGGGTACGATTTTTCTTCGAACCTAAATAATCAAATATCCTATTTTAAAT
63 GTGTCC-TAACGTGTTGGATACGATTTTTCTTTGAACCTAAATAATTGAGTATCCTA-CTTAAAT
* ** ** * * * * * *
26432820 TGATAA-T--CGTCATTT-TTACTTGTACATTAC-TTG-GATTTATCCATCTTTTGCAGAACATT
126 TGATAATTGCCTTTTTTTGTTTTTTATAAATTACATAGTTATTTATCCATATTTTACAGAACATT
*
26432879 TCTAACAAAATAAAATGTATATCGTTCTTTA
191 TCTAACAAAATAAAATGCATATCGTTCTTTA
* *
26432910 TATACATAAATTGTTTTAAAAATAAAGACAATGTTATTTTATTTTAGGGAATTCGAGAAATTGTG
1 AATACATAAATTGTTTTAAAAATAAAGACAATGTTATTTTATTTTAGGGAATTCGAGAAATAGTG
* *
26432975 TCCTAACGTGTTGGATACGATTTTTCTTTTAACCTAAATAATTGAGTATCCTCCTTAAATTGATA
66 TCCTAACGTGTTGGATACGATTTTTCTTTGAACCTAAATAATTGAGTATCCTACTTAAATTGATA
26433040 ATTGCCTTTTTTTGTTTTTTATAAATTACATAGTTATTTATCCATATTTTACAGAACATTT-TAA
131 ATTGCCTTTTTTTGTTTTTTATAAATTACATAGTTATTTATCCATATTTTACAGAACATTTCTAA
26433104 CAAAAT-AAATAGCATATCGTT-TTTAA
196 CAAAATAAAAT-GCATATCGTTCTTT-A
* *
26433130 AATACATAAATTGTTTTAGGAAAAATTAAGGCAATGTTATTTTATTTTAGGGAATTCGAGAAATA
1 AATACATAAATTGTTTT---AAAAATAAAGACAATGTTATTTTATTTTAGGGAATTCGAGAAATA
* *
26433195 GT-TCCCTAATGTGTT-GAGTATGATTTTTCTTTGAACCTAAATAATTGAGTATCCTACTTAAA
63 GTGT-CCTAACGTGTTGGA-TACGATTTTTCTTTGAACCTAAATAATTGAGTATCCTACTTAAA
26433257 CTATAAATGC
Statistics
Matches: 296, Mismatches: 35, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
215 18 0.06
216 75 0.25
217 21 0.07
218 5 0.02
219 18 0.06
220 37 0.12
221 24 0.08
222 3 0.01
223 95 0.32
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (221 bp):
AATACATAAATTGTTTTAAAAATAAAGACAATGTTATTTTATTTTAGGGAATTCGAGAAATAGTG
TCCTAACGTGTTGGATACGATTTTTCTTTGAACCTAAATAATTGAGTATCCTACTTAAATTGATA
ATTGCCTTTTTTTGTTTTTTATAAATTACATAGTTATTTATCCATATTTTACAGAACATTTCTAA
CAAAATAAAATGCATATCGTTCTTTA
Found at i:26437271 original size:6 final size:6
Alignment explanation
Indices: 26437257--26437312 Score: 67
Period size: 6 Copynumber: 9.0 Consensus size: 6
26437247 CACCCTTTAT
* * *
26437257 TAAACA TAAAAA TAAAAA TAAAAA TAAAAA AACAACAA TAAAAA TGAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TA-AA-AA TAAAAA TAAAAA
26437307 TAAAAA
1 TAAAAA
26437313 ATTCAAAGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
6 36 0.84
7 4 0.09
8 3 0.07
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (6 bp):
TAAAAA
Found at i:26440347 original size:74 final size:74
Alignment explanation
Indices: 26440254--26440494 Score: 209
Period size: 74 Copynumber: 3.3 Consensus size: 74
26440244 ATTGTTGTCA
* *
26440254 GTTTACCTAACTAGGGCTGGGCACACCATTATATTCGTCGA-TTATCCGACTAGCGATGGGCACA
1 GTTTATCTAACTAGAGCTGGGCACACCATT-TATTCGTCGATTTATCCGACTAGCGATGGGCACA
26440318 ACGT-TCGTT-G
65 A-GTATC-TTCG
* *
26440328 GTTTATCTAACTAGTGCTGGGCACA-CACTT-TT--T-GATTTATCCGACTAGCGATGGGCAC-A
1 GTTTATCTAACTAGAGCTGGGCACACCATTTATTCGTCGATTTATCCGACTAGCGATGGGCACAA
26440387 GTATCTTCG
66 GTATCTTCG
* * * * * * * *
26440396 GTTAATCCAACTAGAGCTGGGCTCACAATTTATTTCGTCAATTTATCTGACTAGTGTTGGGCACA
1 GTTTATCTAACTAGAGCTGGGCACACCATTTA-TTCGTCGATTTATCCGACTAGCGATGGGCACA
*
26440461 CA-T-TTTTCG
65 -AGTATCTTCG
* *
26440470 GTTTAT-TCGACTAGCGCTGGGCACA
1 GTTTATCT-AACTAGAGCTGGGCACA
26440495 AATATCGTTG
Statistics
Matches: 136, Mismatches: 19, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
67 4 0.03
68 27 0.20
69 26 0.19
71 4 0.03
72 1 0.01
73 4 0.03
74 68 0.50
75 1 0.01
76 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (74 bp):
GTTTATCTAACTAGAGCTGGGCACACCATTTATTCGTCGATTTATCCGACTAGCGATGGGCACAA
GTATCTTCG
Found at i:26440375 original size:34 final size:33
Alignment explanation
Indices: 26440295--26440494 Score: 112
Period size: 34 Copynumber: 5.7 Consensus size: 33
26440285 TATTCGTCGA
* * *
26440295 TTATCCGACTAGCGATGGGCACAACGTTCGTTGGT
1 TTATCCGACTAGCGCTGGGCAC-ACATT-TTTGGT
** * *
26440330 TTATCTAACTAGTGCTGGGCACACACTTTTTGAT
1 TTATCCGACTAGCGCTGGGCACACA-TTTTTGGT
* * * *
26440364 TTATCCGACTAGCGATGGGCACAGTATCTTCGGT
1 TTATCCGACTAGCGCTGGGCACA-CATTTTTGGT
* * * * *
26440398 TAATCCAACTAGAGCTGGGCTCACAATTTATTTCGTCAAT
1 TTATCCGACTAGCGCTGGGCACAC-A-TT-TTT-G---GT
* * *
26440438 TTATCTGACTAGTGTTGGGCACACATTTTTCGGT
1 TTATCCGACTAGCGCTGGGCACACATTTTT-GGT
*
26440472 TTATTCGACTAGCGCTGGGCACA
1 TTATCCGACTAGCGCTGGGCACA
26440495 AATATCGTTG
Statistics
Matches: 121, Mismatches: 35, Indels: 19
0.69 0.20 0.11
Matches are distributed among these distances:
34 69 0.57
35 22 0.18
36 2 0.02
37 6 0.05
38 2 0.02
39 1 0.01
40 19 0.16
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.33
Consensus pattern (33 bp):
TTATCCGACTAGCGCTGGGCACACATTTTTGGT
Found at i:26440433 original size:108 final size:109
Alignment explanation
Indices: 26440329--26440530 Score: 293
Period size: 108 Copynumber: 1.9 Consensus size: 109
26440319 CGTTCGTTGG
*
26440329 TTTATCTAACTAGTGCTGGGCACACACTTTTT-GATTTATCCGACTAGCGATGGGCAC-AGTATC
1 TTTATCTAACTAGTGCTGGGCACACA-TTTTTCGATTTATCCGACTAGCGATGGGCACAAATATC
26440392 -TTCGGTTAATCCAACTAGAGCTGGGCTCACAATTTATTTCGTCAA
65 GTT-GGTTAATCCAACTAGAGCTGGGCTCACAATTTATTTCGTCAA
* * * * *
26440437 TTTATCTGACTAGTGTTGGGCACACATTTTTCGGTTTATTCGACTAGCGCTGGGCACAAATATCG
1 TTTATCTAACTAGTGCTGGGCACACATTTTTCGATTTATCCGACTAGCGATGGGCACAAATATCG
* *
26440502 TTGGTTAATCCAACTAGAGTTTGGCTCAC
66 TTGGTTAATCCAACTAGAGCTGGGCTCAC
26440531 TTTTAATATC
Statistics
Matches: 83, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
107 5 0.06
108 46 0.55
109 30 0.36
110 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (109 bp):
TTTATCTAACTAGTGCTGGGCACACATTTTTCGATTTATCCGACTAGCGATGGGCACAAATATCG
TTGGTTAATCCAACTAGAGCTGGGCTCACAATTTATTTCGTCAA
Found at i:26440565 original size:109 final size:108
Alignment explanation
Indices: 26440345--26440566 Score: 261
Period size: 109 Copynumber: 2.0 Consensus size: 108
26440335 TAACTAGTGC
*
26440345 TGGGCACACACTTTTTGATTTATCCGACTAGCGATGGGCACAGTATCTTCGGTTAATCCAACTAG
1 TGGGCACACACTTTTTGATTTATCCGACTAGCGATGGGCACAATATCTTCGGTTAATCCAACTAG
* ** **
26440410 AGCTGGGCTCACAATTTATTTCGTCAATTTATCTGACTAGTGT
66 AGCTGGGCTCACAATTTATATCGTCAATTTATCCAACTAGCAT
* * *
26440453 TGGGCACACA-TTTTTCGGTTTATTCGACTAGCGCTGGGCACAAATATCGTT-GGTTAATCCAAC
1 TGGGCACACACTTTTT-GATTTATCCGACTAGCGATGGGCAC-AATATC-TTCGGTTAATCCAAC
* * * * *
26440516 TAGAGTTTGGCTCAC-TTTTAATATCGTCAGTTTATCCAATTAGCAT
63 TAGAGCTGGGCTCACAATTT-ATATCGTCAATTTATCCAACTAGCAT
26440562 TGGGC
1 TGGGC
26440567 GCAAATTCTT
Statistics
Matches: 96, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
107 5 0.05
108 35 0.36
109 54 0.56
110 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (108 bp):
TGGGCACACACTTTTTGATTTATCCGACTAGCGATGGGCACAATATCTTCGGTTAATCCAACTAG
AGCTGGGCTCACAATTTATATCGTCAATTTATCCAACTAGCAT
Found at i:26442570 original size:17 final size:17
Alignment explanation
Indices: 26442545--26442578 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26442535 TTTCTTAAGC
*
26442545 CTAAGGATGAGGTTCAT
1 CTAAAGATGAGGTTCAT
26442562 CTAAAGATGAGGTTCAT
1 CTAAAGATGAGGTTCAT
26442579 AGTACCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.29
Consensus pattern (17 bp):
CTAAAGATGAGGTTCAT
Found at i:26447252 original size:69 final size:70
Alignment explanation
Indices: 26447135--26447286 Score: 191
Period size: 69 Copynumber: 2.2 Consensus size: 70
26447125 TGCGCTCAAT
* * *
26447135 GCTAGTCGGATAAACCGATGAATTGTGTGCCCATCACTAGTCAAATAAACTGACA-AAGGTTGCA
1 GCTAGTCGGATAAACCGACGAATTGTGTGCCCAACACTAGTCAAATAAACTAACAGAA-GTTGCA
26447199 CCCAGC
65 CCCAGC
** * * *
26447205 GCTAGTCGGATAAGTCGACGAA-TGTGTGTCCAACACTAGTCAGATAAACTAACAGAAGTTGCGC
1 GCTAGTCGGATAAACCGACGAATTGTGTGCCCAACACTAGTCAAATAAACTAACAGAAGTTGCAC
*
26447269 CCAGT
66 CCAGC
*
26447274 GCTAGTTGGATAA
1 GCTAGTCGGATAA
26447287 CTGAAAATAT
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
69 50 0.70
70 21 0.30
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (70 bp):
GCTAGTCGGATAAACCGACGAATTGTGTGCCCAACACTAGTCAAATAAACTAACAGAAGTTGCAC
CCAGC
Found at i:26448332 original size:26 final size:26
Alignment explanation
Indices: 26448303--26448422 Score: 150
Period size: 26 Copynumber: 4.6 Consensus size: 26
26448293 CTCTATCTAA
*
26448303 GCTCGTAAGAGCTAAATTCTGTCTGG
1 GCTCGTATGAGCTAAATTCTGTCTGG
* *
26448329 GCTCGCATGAGCTAAATTCTATCTGG
1 GCTCGTATGAGCTAAATTCTGTCTGG
* *
26448355 GCTCGTATGAGCTAAATTTTGTCCGG
1 GCTCGTATGAGCTAAATTCTGTCTGG
* * * * *
26448381 GCTCATAAGAGCTAAATTTTTTCTAG
1 GCTCGTATGAGCTAAATTCTGTCTGG
26448407 GCTCGTATGAGCTAAA
1 GCTCGTATGAGCTAAA
26448423 CTTTTGGAAA
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (26 bp):
GCTCGTATGAGCTAAATTCTGTCTGG
Found at i:26448351 original size:52 final size:52
Alignment explanation
Indices: 26448294--26448422 Score: 168
Period size: 52 Copynumber: 2.5 Consensus size: 52
26448284 AGAGCGTAAC
* * * * *
26448294 TCTATCTAAGCTCGTAAGAGCTAAATTCTGTCTGGGCTCGCATGAGCTAAAT
1 TCTATCTAGGCTCGTATGAGCTAAATTCTGTCCGGGCTCACAAGAGCTAAAT
* * *
26448346 TCTATCTGGGCTCGTATGAGCTAAATTTTGTCCGGGCTCATAAGAGCTAAAT
1 TCTATCTAGGCTCGTATGAGCTAAATTCTGTCCGGGCTCACAAGAGCTAAAT
* *
26448398 TTTTTCTAGGCTCGTATGAGCTAAA
1 TCTATCTAGGCTCGTATGAGCTAAA
26448423 CTTTTGGAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (52 bp):
TCTATCTAGGCTCGTATGAGCTAAATTCTGTCCGGGCTCACAAGAGCTAAAT
Found at i:26453651 original size:21 final size:21
Alignment explanation
Indices: 26453604--26453654 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
26453594 AATAGTGCAG
* *
26453604 ACTTCTACCGATACAAGTGAT
1 ACTTCTATCGATACAACTGAT
*
26453625 AGTTCTATCGATACAACTGACT
1 ACTTCTATCGATACAACTGA-T
26453647 -CTTCTATC
1 ACTTCTATC
26453655 AAAACAAGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (21 bp):
ACTTCTATCGATACAACTGAT
Found at i:26455997 original size:19 final size:20
Alignment explanation
Indices: 26455973--26456013 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26455963 GTGAAAGCGT
*
26455973 AAATAATAAA-TAAAATAAA
1 AAATAACAAATTAAAATAAA
*
26455992 AAATAACAAATTAAACTAAA
1 AAATAACAAATTAAAATAAA
26456012 AA
1 AA
26456014 GAAACTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.20
Consensus pattern (20 bp):
AAATAACAAATTAAAATAAA
Found at i:26460301 original size:31 final size:31
Alignment explanation
Indices: 26460261--26460319 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
26460251 CTTAACAACT
*
26460261 TAGTGACTTAAATAAAAACTTTTGAATAGTC
1 TAGTAACTTAAATAAAAACTTTTGAATAGTC
*
26460292 TAGTAACTTAAATGAAAACTTTTGAATA
1 TAGTAACTTAAATAAAAACTTTTGAATA
26460320 TTTTAGTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (31 bp):
TAGTAACTTAAATAAAAACTTTTGAATAGTC
Found at i:26461536 original size:19 final size:19
Alignment explanation
Indices: 26461512--26461549 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
26461502 ATACCACACT
26461512 TTTAACAACGTGAGATATG
1 TTTAACAACGTGAGATATG
26461531 TTTAACAACGTGAGATATG
1 TTTAACAACGTGAGATATG
26461550 ACGTTTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (19 bp):
TTTAACAACGTGAGATATG
Found at i:26462982 original size:14 final size:14
Alignment explanation
Indices: 26462963--26463009 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
26462953 TCATCTCCCC
26462963 TCTTTTCTTAGTTT
1 TCTTTTCTTAGTTT
* *
26462977 TCTTTTCGTA-TCT
1 TCTTTTCTTAGTTT
* *
26462990 TCTTTTATTGGTTT
1 TCTTTTCTTAGTTT
26463004 TCTTTT
1 TCTTTT
26463010 TCATTTGACT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 9 0.35
14 17 0.65
ACGTcount: A:0.06, C:0.15, G:0.09, T:0.70
Consensus pattern (14 bp):
TCTTTTCTTAGTTT
Found at i:26465071 original size:52 final size:52
Alignment explanation
Indices: 26464979--26465213 Score: 283
Period size: 52 Copynumber: 4.5 Consensus size: 52
26464969 CCTTTAATAT
* * * ** * * *
26464979 TCACGATGACACATAGTCATTGGACCTCTTCTTCCTTAAAGGAATCATACAC
1 TCACGATGACACATAATCATCGGACCTCATAATCCGTAAAGGATTTATACAC
** * ** *
26465031 TCACGATGACACATACCCATCGAACCTTGTAATCCGTAAAGGATTTATATAC
1 TCACGATGACACATAATCATCGGACCTCATAATCCGTAAAGGATTTATACAC
* *
26465083 TCACGATGACACATAGTCATCGGACCTCATAATCTGTAAAGGATTTATACAC
1 TCACGATGACACATAATCATCGGACCTCATAATCCGTAAAGGATTTATACAC
*
26465135 TCAC-AGTGACACATAATCATCGGACCTCATAATCCGTAAAGGATTTATATAC
1 TCACGA-TGACACATAATCATCGGACCTCATAATCCGTAAAGGATTTATACAC
* *
26465187 TCACGATGACACAGAGTCATCGGACCT
1 TCACGATGACACATAATCATCGGACCT
26465214 TTTTCATTTA
Statistics
Matches: 157, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
51 1 0.01
52 155 0.99
53 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (52 bp):
TCACGATGACACATAATCATCGGACCTCATAATCCGTAAAGGATTTATACAC
Found at i:26465168 original size:104 final size:104
Alignment explanation
Indices: 26464971--26465213 Score: 330
Period size: 104 Copynumber: 2.3 Consensus size: 104
26464961 ATTCATTTCC
* * * **
26464971 TTTA-ATATTCACGATGACACATAGTCATTGGACCTCTTCTTCCTTAAAGGAATCATACACTCAC
1 TTTATATACTCACGATGACACATAGTCATCGGACCTCATAATCCTTAAAGGAATCATACACTCAC
* **
26465035 GATGACACATACCCATCGAACCTTGTAATCCGTAAAGGA
66 GATGACACATAACCATCGAACCTCATAATCCGTAAAGGA
* *
26465074 TTTATATACTCACGATGACACATAGTCATCGGACCTCATAAT-CTGTAAAGGATTTATACACTCA
1 TTTATATACTCACGATGACACATAGTCATCGGACCTCATAATCCT-TAAAGGAATCATACACTCA
* *
26465138 C-AGTGACACATAATCATCGGACCTCATAATCCGTAAAGGA
65 CGA-TGACACATAACCATCGAACCTCATAATCCGTAAAGGA
*
26465178 TTTATATACTCACGATGACACAGAGTCATCGGACCT
1 TTTATATACTCACGATGACACATAGTCATCGGACCT
26465214 TTTTCATTTA
Statistics
Matches: 124, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
103 7 0.06
104 117 0.94
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (104 bp):
TTTATATACTCACGATGACACATAGTCATCGGACCTCATAATCCTTAAAGGAATCATACACTCAC
GATGACACATAACCATCGAACCTCATAATCCGTAAAGGA
Found at i:26471482 original size:25 final size:24
Alignment explanation
Indices: 26471448--26471502 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 24
26471438 AGCAAACATT
26471448 TTTTTCTTCTTTTTTTCTC-TTTT-C
1 TTTTTCTTC--TTTTTCTCATTTTCC
26471472 TTTTTCTTTCTTTTTCTCATTTTCC
1 TTTTTC-TTCTTTTTCTCATTTTCC
26471497 TTTTTC
1 TTTTTC
26471503 AAGTGACTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
23 8 0.29
24 10 0.36
25 10 0.36
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (24 bp):
TTTTTCTTCTTTTTCTCATTTTCC
Found at i:26484344 original size:52 final size:52
Alignment explanation
Indices: 26484266--26484486 Score: 300
Period size: 52 Copynumber: 4.2 Consensus size: 52
26484256 TTCCTTTAAT
* * * * * * * *
26484266 ACTCACAATGACACATAGTCATCAGACCACTTATTCCTTAAAGGAATCATAC
1 ACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAGGATTTATAA
*
26484318 ACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAAGATTTATAA
1 ACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAGGATTTATAA
* * *
26484370 ACTCACGATGACAGATAGTCATCGGACCTCATAATCCGTAAAGGATTTATAT
1 ACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAGGATTTATAA
* *
26484422 ACTCACGATGACACATAGTCATC-GAACCTCATAATCCGTAAAAGATTTATAT
1 ACTCACGATGACACATAGTCATCAG-ACCTCATAATCCGTAAAGGATTTATAA
26484474 ACTCACGATGACA
1 ACTCACGATGACA
26484487 GAGTCATCGG
Statistics
Matches: 153, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
51 1 0.01
52 152 0.99
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.25
Consensus pattern (52 bp):
ACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAGGATTTATAA
Found at i:26484451 original size:104 final size:104
Alignment explanation
Indices: 26484266--26484499 Score: 339
Period size: 104 Copynumber: 2.3 Consensus size: 104
26484256 TTCCTTTAAT
* * * * * *
26484266 ACTCACAATGACACATAGTCATCAGACCACTTATTCCTTAAAGGAATCATACACTCACGATGACA
1 ACTCACGATGACAGATAGTCATCGGACCACATAATCCGTAAAGGAATCATACACTCACGATGACA
26484331 CATAGTCATCAGACCTCATAATCCGTAAAAGATTTATAA
66 CATAGTCATCAGACCTCATAATCCGTAAAAGATTTATAA
* * * *
26484370 ACTCACGATGACAGATAGTCATCGGACCTCATAATCCGTAAAGGATTTATATACTCACGATGACA
1 ACTCACGATGACAGATAGTCATCGGACCACATAATCCGTAAAGGAATCATACACTCACGATGACA
*
26484435 CATAGTCATC-GAACCTCATAATCCGTAAAAGATTTATAT
66 CATAGTCATCAG-ACCTCATAATCCGTAAAAGATTTATAA
26484474 ACTCACGATGACAG--AGTCATCGGACC
1 ACTCACGATGACAGATAGTCATCGGACC
26484500 CTTTTCATTT
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
102 12 0.10
103 1 0.01
104 105 0.89
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (104 bp):
ACTCACGATGACAGATAGTCATCGGACCACATAATCCGTAAAGGAATCATACACTCACGATGACA
CATAGTCATCAGACCTCATAATCCGTAAAAGATTTATAA
Found at i:26490917 original size:21 final size:20
Alignment explanation
Indices: 26490870--26490917 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
26490860 AAATCCTATT
* *
26490870 ATTTTTACTATTTTTTTTCC
1 ATTTTTACTATTGTTTTCCC
*
26490890 ATGTTTTACTGTTGTTTTCCC
1 AT-TTTTACTATTGTTTTCCC
26490911 ACTTTTT
1 A-TTTTT
26490918 GTTACCATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 2 0.09
21 20 0.87
22 1 0.04
ACGTcount: A:0.12, C:0.17, G:0.06, T:0.65
Consensus pattern (20 bp):
ATTTTTACTATTGTTTTCCC
Found at i:26491902 original size:2 final size:2
Alignment explanation
Indices: 26491895--26491927 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26491885 AGCCTCAAGG
26491895 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26491928 GCAATTATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26494552 original size:31 final size:29
Alignment explanation
Indices: 26494515--26494578 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 29
26494505 GTTAAAATAT
*
26494515 TTTTTAA-AATATATTTTTATATTTTTTATAA
1 TTTTTAATAA-ATATTTTGA-ATTTTTTA-AA
26494546 TTTTTAATAAATATTTTGAATTTTTTAAA
1 TTTTTAATAAATATTTTGAATTTTTTAAA
26494575 TTTT
1 TTTT
26494579 AAAGAATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 6 0.19
30 8 0.26
31 15 0.48
32 2 0.06
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (29 bp):
TTTTTAATAAATATTTTGAATTTTTTAAA
Found at i:26497024 original size:14 final size:16
Alignment explanation
Indices: 26496996--26497028 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
26496986 TGAAATTTAA
26496996 TTTTTTACCCAAATTT
1 TTTTTTACCCAAATTT
26497012 TTTTTTA-CC-AATTT
1 TTTTTTACCCAAATTT
26497026 TTT
1 TTT
26497029 AAAATTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 2 0.12
16 7 0.41
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTTTACCCAAATTT
Found at i:26497862 original size:31 final size:31
Alignment explanation
Indices: 26497827--26497885 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
26497817 CAACCTAGTG
26497827 ACTTAAATAAAAACTTGTGAATAATTCAGTA
1 ACTTAAATAAAAACTTGTGAATAATTCAGTA
* * *
26497858 ACTTAAATTAAAACTTTTGAATATTTCA
1 ACTTAAATAAAAACTTGTGAATAATTCA
26497886 ATGACCAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37
Consensus pattern (31 bp):
ACTTAAATAAAAACTTGTGAATAATTCAGTA
Found at i:26500029 original size:50 final size:50
Alignment explanation
Indices: 26499968--26500069 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
26499958 AAAGTAAAAT
26499968 GGTATATAAATAAAAGTATGGTGGCAAATTACAATCATAGGCGAATCTAG
1 GGTATATAAATAAAAGTATGGTGGCAAATTACAATCATAGGCGAATCTAG
26500018 GGTATATAAATAAAAGTATGGTGGCAAATTACAATCATAGGCGAATCTAG
1 GGTATATAAATAAAAGTATGGTGGCAAATTACAATCATAGGCGAATCTAG
26500068 GG
1 GG
26500070 GGGGTTGGAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.25
Consensus pattern (50 bp):
GGTATATAAATAAAAGTATGGTGGCAAATTACAATCATAGGCGAATCTAG
Found at i:26509956 original size:2 final size:2
Alignment explanation
Indices: 26509939--26509978 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
26509929 TAGCAACTTC
*
26509939 AT AT CT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26509979 CACACACACA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26543787 original size:9 final size:8
Alignment explanation
Indices: 26543773--26543842 Score: 61
Period size: 9 Copynumber: 8.2 Consensus size: 8
26543763 TTATATTGTT
26543773 AAAAAATGA
1 AAAAAAT-A
26543782 AAAAAATA
1 AAAAAATA
26543790 AAAAAATCTA
1 AAAAAA--TA
*
26543800 AAAATATA
1 AAAAAATA
26543808 TAAAAAAT-
1 -AAAAAATA
*
26543816 TAAAAATA
1 AAAAAATA
26543824 AAAAAATTA
1 AAAAAA-TA
*
26543833 AAATAATA
1 AAAAAATA
26543841 AA
1 AA
26543843 TTTGAGATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
7 6 0.12
8 18 0.35
9 20 0.39
10 7 0.14
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.20
Consensus pattern (8 bp):
AAAAAATA
Found at i:26544484 original size:21 final size:21
Alignment explanation
Indices: 26544440--26544491 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
26544430 CTTTATAGTT
*
26544440 CTACCGATACAAGTGAGGCAA
1 CTACCGATACAAGTGAGACAA
* * *
26544461 CTACCGATACAAGTTATACTA
1 CTACCGATACAAGTGAGACAA
26544482 CTACCGATAC
1 CTACCGATAC
26544492 TAAAAACTCC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.21
Consensus pattern (21 bp):
CTACCGATACAAGTGAGACAA
Found at i:26544570 original size:63 final size:63
Alignment explanation
Indices: 26544471--26544593 Score: 237
Period size: 63 Copynumber: 2.0 Consensus size: 63
26544461 CTACCGATAC
*
26544471 AAGTTATACTACTACCGATACTAAAAACTCCAGAGAGTTGGGAAGTCTTACCCCGTAACTTCT
1 AAGTTATACTACTACCGATACTAAAAACTCCAGAGAGTTGGGAAGTCTTACCCCGCAACTTCT
26544534 AAGTTATACTACTACCGATACTAAAAACTCCAGAGAGTTGGGAAGTCTTACCCCGCAACT
1 AAGTTATACTACTACCGATACTAAAAACTCCAGAGAGTTGGGAAGTCTTACCCCGCAACT
26544594 CCTATCGATA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.25
Consensus pattern (63 bp):
AAGTTATACTACTACCGATACTAAAAACTCCAGAGAGTTGGGAAGTCTTACCCCGCAACTTCT
Found at i:26545244 original size:35 final size:35
Alignment explanation
Indices: 26545198--26545283 Score: 129
Period size: 35 Copynumber: 2.5 Consensus size: 35
26545188 TTACTCCCTA
*
26545198 TTGACCCAAAGGTCATTATGCTCACTTTCTC-CTTG
1 TTGACCCAAAGGTCATTATACTCACTTTCTCTC-TG
*
26545233 TTGACCCAAAGGTCATTATACTCATTTTCTCTCTG
1 TTGACCCAAAGGTCATTATACTCACTTTCTCTCTG
*
26545268 TTGACCTAAAGGTCAT
1 TTGACCCAAAGGTCAT
26545284 GCCTGTTACC
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
35 46 0.98
36 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (35 bp):
TTGACCCAAAGGTCATTATACTCACTTTCTCTCTG
Found at i:26550380 original size:40 final size:40
Alignment explanation
Indices: 26550330--26550467 Score: 197
Period size: 40 Copynumber: 3.4 Consensus size: 40
26550320 TTCCTTTAAC
* *
26550330 CATATTCTCATTCTCATCTTGAGACATGATTCTTCCTTAT
1 CATAATCTCATTCTCATCTTGAGATATGATTCTTCCTTAT
*
26550370 CATAATCTCATTCTCATCTCGAGATATGAGTT-TTCCTTAT
1 CATAATCTCATTCTCATCTTGAGATATGA-TTCTTCCTTAT
*
26550410 CATAATCTCATTCTCATCTTGAGATATGAGTCTTCCTTATT
1 CATAATCTCATTCTCATCTTGAGATATGATTCTTCCTTA-T
* *
26550451 CAAAATCTCATGCTCAT
1 CATAATCTCATTCTCAT
26550468 TTTCGAGTCA
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 69 0.78
41 18 0.20
ACGTcount: A:0.25, C:0.24, G:0.09, T:0.42
Consensus pattern (40 bp):
CATAATCTCATTCTCATCTTGAGATATGATTCTTCCTTAT
Found at i:26553924 original size:25 final size:25
Alignment explanation
Indices: 26553875--26554006 Score: 90
Period size: 25 Copynumber: 5.2 Consensus size: 25
26553865 ACAGAGTTTA
26553875 GCTCTTACGAA-CCCTAACAGAATATT
1 GCTCTTAC-AAGCCC-AACAGAATATT
* *
26553901 GCTCTTACAAGCCCATCAGAATATC
1 GCTCTTACAAGCCCAACAGAATATT
* *
26553926 GCTCCTACAAG-CTAGACAGAATATT
1 GCTCTTACAAGCCCA-ACAGAATATT
** * *
26553951 GCTCTTATGAG-CCAGATAGAATATC
1 GCTCTTACAAGCCCA-ACAGAATATT
* * * * *
26553976 GCTGTTACGAGCCAAACAAAATATC
1 GCTCTTACAAGCCCAACAGAATATT
26554001 GCTCTT
1 GCTCTT
26554007 TCGAGCTAGA
Statistics
Matches: 85, Mismatches: 18, Indels: 7
0.77 0.16 0.06
Matches are distributed among these distances:
24 2 0.02
25 70 0.82
26 13 0.15
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (25 bp):
GCTCTTACAAGCCCAACAGAATATT
Found at i:26553999 original size:50 final size:50
Alignment explanation
Indices: 26553890--26554006 Score: 128
Period size: 50 Copynumber: 2.3 Consensus size: 50
26553880 TACGAACCCT
*
26553890 AACAGAATATTGCTCTTACAAGCCCATCAGAATATCGCTCCTACAAGCTA
1 AACAGAATATTGCTCTTACAAGCCCATCAGAATATCGCTCCTACAAGCCA
* ** * ** *
26553940 GACAGAATATTGCTCTTATGAGCCAGAT-AGAATATCGCTGTTACGAGCCA
1 AACAGAATATTGCTCTTACAAGCC-CATCAGAATATCGCTCCTACAAGCCA
* *
26553990 AACAAAATATCGCTCTT
1 AACAGAATATTGCTCTT
26554007 TCGAGCTAGA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 53 0.96
51 2 0.04
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (50 bp):
AACAGAATATTGCTCTTACAAGCCCATCAGAATATCGCTCCTACAAGCCA
Found at i:26558548 original size:14 final size:15
Alignment explanation
Indices: 26558529--26558562 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
26558519 ACTAACTTTT
*
26558529 AATTCACTAATT-AA
1 AATTCACCAATTCAA
26558543 AATTCACCAATTCAA
1 AATTCACCAATTCAA
26558558 AATTC
1 AATTC
26558563 TATATAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (15 bp):
AATTCACCAATTCAA
Found at i:26563034 original size:24 final size:24
Alignment explanation
Indices: 26563007--26563074 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 24
26562997 CCTAGAGTTT
26563007 TTTTGTATGATTATGACGTTAGAC
1 TTTTGTATGATTATGACGTTAGAC
* * * ** * *
26563031 TTTTGTATG-GTATTAGGCAATAT
1 TTTTGTATGATTATGACGTTAGAC
26563054 TTTTGTATGATTATGACGTTA
1 TTTTGTATGATTATGACGTTA
26563075 AACTCGTGGC
Statistics
Matches: 31, Mismatches: 12, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
23 16 0.52
24 15 0.48
ACGTcount: A:0.25, C:0.06, G:0.21, T:0.49
Consensus pattern (24 bp):
TTTTGTATGATTATGACGTTAGAC
Found at i:26570708 original size:29 final size:29
Alignment explanation
Indices: 26570666--26570723 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
26570656 ATCAACATGC
*
26570666 GATAACACAACACAGATTAA-ATTCACACA
1 GATAACACAACACAGAATAATA-TCACACA
26570695 GATAACACAACACAGAATAATATCACACA
1 GATAACACAACACAGAATAATATCACACA
26570724 AGGTGTGAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 26 0.96
30 1 0.04
ACGTcount: A:0.53, C:0.24, G:0.07, T:0.16
Consensus pattern (29 bp):
GATAACACAACACAGAATAATATCACACA
Found at i:26571199 original size:13 final size:13
Alignment explanation
Indices: 26571183--26571237 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
26571173 GTTGTTTGAA
26571183 AAAGTCAACAGTC
1 AAAGTCAACAGTC
26571196 AAAGTCAACAGTC
1 AAAGTCAACAGTC
* *
26571209 AATGGTCAA-TGATC
1 AA-AGTCAACAG-TC
*
26571223 AAAGTCAACAATC
1 AAAGTCAACAGTC
26571236 AA
1 AA
26571238 TGATTCAGGT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 25 0.74
14 9 0.26
ACGTcount: A:0.47, C:0.20, G:0.15, T:0.18
Consensus pattern (13 bp):
AAAGTCAACAGTC
Found at i:26571238 original size:20 final size:20
Alignment explanation
Indices: 26571183--26571241 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
26571173 GTTGTTTGAA
*
26571183 AAAGTCAACAGTCAAAG-TC
1 AAAGTCAACAGTCAATGATC
**
26571202 AACAGTCAATGGTCAATGATC
1 AA-AGTCAACAGTCAATGATC
*
26571223 AAAGTCAACAATCAATGAT
1 AAAGTCAACAGTCAATGAT
26571242 TCAGGTTCGG
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
19 2 0.06
20 26 0.81
21 4 0.12
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.20
Consensus pattern (20 bp):
AAAGTCAACAGTCAATGATC
Found at i:26571354 original size:25 final size:25
Alignment explanation
Indices: 26571321--26571371 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
26571311 AAAGCTTGGG
*
26571321 TCATAGTTGGGCTCA-ACATTGGGCT
1 TCATAGTTGGG-TCACAAATTGGGCT
*
26571346 TCATGGTTGGGTCACAAATTGGGCT
1 TCATAGTTGGGTCACAAATTGGGCT
26571371 T
1 T
26571372 GAGTTTTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 3 0.13
25 20 0.87
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (25 bp):
TCATAGTTGGGTCACAAATTGGGCT
Found at i:26573525 original size:22 final size:22
Alignment explanation
Indices: 26573500--26573541 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
26573490 TTTTGGTTTT
26573500 TATTTTATT-TTATTTATTTATC
1 TATTTT-TTATTATTTATTTATC
*
26573522 TATTTTTTATTCTTTATTTA
1 TATTTTTTATTATTTATTTA
26573542 CTAACTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (22 bp):
TATTTTTTATTATTTATTTATC
Found at i:26591155 original size:18 final size:17
Alignment explanation
Indices: 26591132--26591165 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26591122 TTTAAAAGAA
26591132 AATCAACAAAAGATTAGT
1 AATCAACAAAAG-TTAGT
*
26591150 AATCAATAAAAGTTAG
1 AATCAACAAAAGTTAG
26591166 AAAAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.56, C:0.09, G:0.12, T:0.24
Consensus pattern (17 bp):
AATCAACAAAAGTTAGT
Found at i:26598282 original size:20 final size:21
Alignment explanation
Indices: 26598242--26598284 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
26598232 TTCCAAATAG
26598242 TATCGATAGCCCTTGTAAAAA
1 TATCGATAGCCCTTGTAAAAA
* *
26598263 TATCGATA-CCTTTTTAAAAA
1 TATCGATAGCCCTTGTAAAAA
26598283 TA
1 TA
26598285 CCAATACCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (21 bp):
TATCGATAGCCCTTGTAAAAA
Found at i:26608554 original size:18 final size:18
Alignment explanation
Indices: 26608533--26608590 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
26608523 TTATATGAAT
26608533 GCATCTGATTTTGTGATC
1 GCATCTGATTTTGTGATC
26608551 GCATCTGATTTTGTGATC
1 GCATCTGATTTTGTGATC
* **
26608569 GCATCTGGTCATGTGATC
1 GCATCTGATTTTGTGATC
26608587 GCAT
1 GCAT
26608591 ATTATCTGGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.17, C:0.19, G:0.24, T:0.40
Consensus pattern (18 bp):
GCATCTGATTTTGTGATC
Found at i:26617999 original size:7 final size:7
Alignment explanation
Indices: 26617987--26618027 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
26617977 TATTTTCTTT
26617987 CTTTTCC
1 CTTTTCC
26617994 CTTTTCC
1 CTTTTCC
26618001 CTTTTCC
1 CTTTTCC
*
26618008 CTTTTTCT
1 C-TTTTCC
*
26618016 CTTTTCT
1 CTTTTCC
26618023 CTTTT
1 CTTTT
26618028 TTTTATATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 26 0.81
8 6 0.19
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (7 bp):
CTTTTCC
Found at i:26618019 original size:15 final size:15
Alignment explanation
Indices: 26617986--26618028 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
26617976 ATATTTTCTT
26617986 TCTTTTCCC-TTTTC
1 TCTTTTCCCTTTTTC
*
26618000 CCTTTTCCCTTTTTC
1 TCTTTTCCCTTTTTC
*
26618015 TCTTTTCTCTTTTT
1 TCTTTTCCCTTTTT
26618029 TTTATATGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 8 0.32
15 17 0.68
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (15 bp):
TCTTTTCCCTTTTTC
Found at i:26618622 original size:17 final size:17
Alignment explanation
Indices: 26618587--26618668 Score: 76
Period size: 17 Copynumber: 4.8 Consensus size: 17
26618577 CTCTAAATTA
26618587 CAATGACAAATAG-AAATG
1 CAATGAC-AAT-GCAAATG
26618605 CAATGACAATGCAAATG
1 CAATGACAATGCAAATG
**
26618622 CAATGACAATTAAAATG
1 CAATGACAATGCAAATG
* **
26618639 TAATGACAATGGGAATG
1 CAATGACAATGCAAATG
**
26618656 TGATGACAATGCA
1 CAATGACAATGCA
26618669 TACTAACAGA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
16 1 0.02
17 46 0.85
18 7 0.13
ACGTcount: A:0.48, C:0.12, G:0.20, T:0.21
Consensus pattern (17 bp):
CAATGACAATGCAAATG
Found at i:26633938 original size:20 final size:20
Alignment explanation
Indices: 26633913--26633950 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
26633903 AAACTGAAAT
26633913 TAAACAAATAAATAAAAAAA
1 TAAACAAATAAATAAAAAAA
26633933 TAAACAAATAAATAAAAA
1 TAAACAAATAAATAAAAA
26633951 GAATCGTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (20 bp):
TAAACAAATAAATAAAAAAA
Found at i:26636721 original size:21 final size:23
Alignment explanation
Indices: 26636680--26636723 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
26636670 ATAACGAATT
26636680 AAAAAATTAATTACAATAATTAA
1 AAAAAATTAATTACAATAATTAA
26636703 AAAAACATT-ATTA-AA-AATTAA
1 AAAAA-ATTAATTACAATAATTAA
26636724 TTTTAAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 6 0.30
22 2 0.10
23 9 0.45
24 3 0.15
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (23 bp):
AAAAAATTAATTACAATAATTAA
Found at i:26645027 original size:24 final size:24
Alignment explanation
Indices: 26645002--26645088 Score: 124
Period size: 24 Copynumber: 3.6 Consensus size: 24
26644992 TGTTCAACCT
26645002 TTCACCTTTCATCTTT-CTCAAC-C
1 TTCACCTTTCAT-TTTCCTCAACTC
*
26645025 TTTCACCTTTCATTTTCCTTAACTC
1 -TTCACCTTTCATTTTCCTCAACTC
*
26645050 TTCACCTTTCATTTTCCTTAACTC
1 TTCACCTTTCATTTTCCTCAACTC
26645074 TTCACCTTTCATTTT
1 TTCACCTTTCATTTT
26645089 ATTATAACTC
Statistics
Matches: 60, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
23 3 0.05
24 56 0.93
25 1 0.02
ACGTcount: A:0.16, C:0.33, G:0.00, T:0.51
Consensus pattern (24 bp):
TTCACCTTTCATTTTCCTCAACTC
Found at i:26645524 original size:24 final size:24
Alignment explanation
Indices: 26645497--26645544 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26645487 ATATATTCCA
26645497 TGGTATGCATGTTTATGATTTAAG
1 TGGTATGCATGTTTATGATTTAAG
26645521 TGGTATGCATGTTTATGATTTAAG
1 TGGTATGCATGTTTATGATTTAAG
26645545 ACTTTGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.04, G:0.25, T:0.46
Consensus pattern (24 bp):
TGGTATGCATGTTTATGATTTAAG
Found at i:26647884 original size:23 final size:23
Alignment explanation
Indices: 26647864--26647929 Score: 62
Period size: 23 Copynumber: 2.7 Consensus size: 23
26647854 TAAGAAATAT
26647864 ATAAATAAAAAAATAAAAAATGA
1 ATAAATAAAAAAATAAAAAATGA
* *
26647887 ATATAT-AAAAAATGATAAAATGTAA
1 ATAAATAAAAAAAT-AAAAAATG--A
*
26647912 ATTAAATACAAAAATAAA
1 A-TAAATAAAAAAATAAA
26647930 TAAAAATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
22 7 0.21
23 12 0.36
25 2 0.06
26 6 0.18
27 6 0.18
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.23
Consensus pattern (23 bp):
ATAAATAAAAAAATAAAAAATGA
Found at i:26649026 original size:21 final size:22
Alignment explanation
Indices: 26648987--26649039 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 22
26648977 CCTGCATGCG
* *
26648987 GACGTGGCGAGAGGTCGGTGCT
1 GACGTGGCGAGACGTCGGTACT
26649009 GACGTGGCGA-ACGTCGGTACT
1 GACGTGGCGAGACGTCGGTACT
26649030 GACGTGGCGA
1 GACGTGGCGA
26649040 CAACGGTGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 19 0.66
22 10 0.34
ACGTcount: A:0.17, C:0.21, G:0.45, T:0.17
Consensus pattern (22 bp):
GACGTGGCGAGACGTCGGTACT
Found at i:26649779 original size:100 final size:100
Alignment explanation
Indices: 26649634--26649813 Score: 227
Period size: 100 Copynumber: 1.8 Consensus size: 100
26649624 TTCGCTTCAC
* * * * *
26649634 TGCAACTTTAGGAAGATAGGATTTAATATTGTAGTCTTATATTGCTCCACTATATCTTCAGGGAG
1 TGCAACTTTAGGAAGATAGGATTTAATATTGTAGCCTCATATTGCTCCACTACAACTTCAGAGAG
26649699 ATAAGATTTGCTTTCATATCTTTAATCCGATCCAT
66 ATAAGATTTGCTTTCATATCTTTAATCCGATCCAT
* ** * * ** *
26649734 TGCAACTTTA-GAGGTATAGGATTTGGTGTTGTAGCCTCATCTTGCTCTGCTACAACTTTAGAGA
1 TGCAACTTTAGGAAG-ATAGGATTTAATATTGTAGCCTCATATTGCTCCACTACAACTTCAGAGA
26649798 GATAAGATTTGCTTTC
65 GATAAGATTTGCTTTC
26649814 GTAACTCCAA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
99 3 0.05
100 63 0.95
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (100 bp):
TGCAACTTTAGGAAGATAGGATTTAATATTGTAGCCTCATATTGCTCCACTACAACTTCAGAGAG
ATAAGATTTGCTTTCATATCTTTAATCCGATCCAT
Done.