Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42061019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 86 of 135
Found at i:26650670 original size:22 final size:21
Alignment explanation
Indices: 26650626--26650672 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
26650616 CCATCTAAGG
*
26650626 AAAAATAAAAGAAACAGATTT
1 AAAAATAAAAGAAACAGAATT
* *
26650647 AAAAATTAAAGAAAATAGAATT
1 AAAAATAAAAG-AAACAGAATT
26650669 AAAA
1 AAAA
26650673 GAAATAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.70, C:0.02, G:0.09, T:0.19
Consensus pattern (21 bp):
AAAAATAAAAGAAACAGAATT
Found at i:26651508 original size:19 final size:19
Alignment explanation
Indices: 26651484--26651526 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
26651474 AAACATAAAT
26651484 TAAATACAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
26651503 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
26651522 TAAAT
1 TAAAT
26651527 CCTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:26651915 original size:20 final size:20
Alignment explanation
Indices: 26651867--26651915 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
26651857 TTAAAAATAG
* * *
26651867 CAAACATTGGTTAGAAATGG
1 CAAACATTGGTAAAAAATGA
* *
26651887 TAAATATTGGTAAAAAATGA
1 CAAACATTGGTAAAAAATGA
26651907 CAAACATTG
1 CAAACATTG
26651916 CTCAAAAACA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.47, C:0.08, G:0.18, T:0.27
Consensus pattern (20 bp):
CAAACATTGGTAAAAAATGA
Found at i:26655727 original size:17 final size:17
Alignment explanation
Indices: 26655705--26655740 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26655695 TATCGATCCA
26655705 AAGAGGAAATAGTTCCC
1 AAGAGGAAATAGTTCCC
26655722 AAGAGGAAATAGTTCCC
1 AAGAGGAAATAGTTCCC
26655739 AA
1 AA
26655741 TGTTTTAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (17 bp):
AAGAGGAAATAGTTCCC
Found at i:26659783 original size:22 final size:21
Alignment explanation
Indices: 26659735--26659785 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
26659725 GATGATGACA
26659735 AAATAA-AAATAAATAAATAC
1 AAATAATAAATAAATAAATAC
**
26659755 ATTTAATAACATAAATAAATAC
1 AAATAATAA-ATAAATAAATAC
26659777 AAATAATAA
1 AAATAATAA
26659786 TAGTAGTGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 4 0.16
21 2 0.08
22 19 0.76
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (21 bp):
AAATAATAAATAAATAAATAC
Found at i:26662672 original size:3 final size:3
Alignment explanation
Indices: 26662664--26662712 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
26662654 TGTTCTTTGC
26662664 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
26662712 A
1 A
26662713 ACATTATTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:26663105 original size:29 final size:28
Alignment explanation
Indices: 26663040--26663105 Score: 64
Period size: 29 Copynumber: 2.2 Consensus size: 28
26663030 AAATTGTTTA
*
26663040 TAATTTTATAATTTTTAAATGATTAAAT
1 TAATTTTATAATTTTTAAAGGATTAAAT
26663068 TAAATTTT-TATATTTTT-AAGGAGTTAAAAT
1 T-AATTTTATA-ATTTTTAAAGGA-TT-AAAT
26663098 GTAATTTT
1 -TAATTTT
26663106 TTTTACTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
28 7 0.22
29 14 0.44
30 10 0.31
31 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (28 bp):
TAATTTTATAATTTTTAAAGGATTAAAT
Found at i:26663133 original size:17 final size:17
Alignment explanation
Indices: 26663091--26663137 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
26663081 TTTTAAGGAG
* *
26663091 TTAAAATGTAATTTTTT
1 TTAAAATTTAAATTTTT
*
26663108 TTACTAATTTAAATTTTT
1 TTA-AAATTTAAATTTTT
26663126 TTAAAATTTAAA
1 TTAAAATTTAAA
26663138 AAATTAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (17 bp):
TTAAAATTTAAATTTTT
Found at i:26664808 original size:22 final size:22
Alignment explanation
Indices: 26664766--26664808 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
26664756 TAGGGCGAGG
*
26664766 AAAATTCAAATTTGATTTTAAA
1 AAAATTCAAATTTGATGTTAAA
*
26664788 AAAATTCGAATTTTGA-GTTAA
1 AAAATTC-AAATTTGATGTTAA
26664809 TCGAATTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (22 bp):
AAAATTCAAATTTGATGTTAAA
Found at i:26666217 original size:58 final size:59
Alignment explanation
Indices: 26666121--26666247 Score: 179
Period size: 57 Copynumber: 2.2 Consensus size: 59
26666111 ATAAATTTAG
*
26666121 GTACCAAATTGAATCTAAAAAAAGTTTAGGTACCAAATTAAGAAAAAAATGTCAAATTCAA
1 GTACCAAATTGAATC-AAAAAAAGTTTAGGTACCAAATTAA-AAAAAAATATCAAATTCAA
* *
26666182 GTACCAAATT-AAGTC-AAAAAA-TTTAGGTACCAAATTAAAAAAAATTATCAAATTGAA
1 GTACCAAATTGAA-TCAAAAAAAGTTTAGGTACCAAATTAAAAAAAAATATCAAATTCAA
26666239 GTACCAAAT
1 GTACCAAAT
26666248 ATTATATTAA
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
57 25 0.40
58 17 0.27
59 6 0.10
60 2 0.03
61 12 0.19
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.25
Consensus pattern (59 bp):
GTACCAAATTGAATCAAAAAAAGTTTAGGTACCAAATTAAAAAAAAATATCAAATTCAA
Found at i:26669283 original size:22 final size:22
Alignment explanation
Indices: 26669258--26669299 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26669248 GAGGAACCGT
26669258 GCTAGATTCTGGAGGCAGTCAA
1 GCTAGATTCTGGAGGCAGTCAA
* * *
26669280 GCTAGTTTCTTGATGCAGTC
1 GCTAGATTCTGGAGGCAGTC
26669300 TTACACTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (22 bp):
GCTAGATTCTGGAGGCAGTCAA
Found at i:26679828 original size:29 final size:30
Alignment explanation
Indices: 26679788--26680071 Score: 119
Period size: 30 Copynumber: 9.5 Consensus size: 30
26679778 ACTCTAGGGC
* *
26679788 AAAATGGTAATTTTGGTGAAATCGAGTTTA
1 AAAATGGTAATTTTGGTGAAATCGGGGTTA
* * ** *
26679818 AAAATGG-AATTTTTGAGAGTTCGGGGGT-
1 AAAATGGTAATTTTGGTGAAATCGGGGTTA
26679846 AAAATGGTAATTTTTGGTGAAATCGGGGTTA
1 AAAATGGTAA-TTTTGGTGAAATCGGGGTTA
* * * *
26679877 AAAATAG-AATTTTAAGAGTTCG-TA-GGGGGGT-
1 AAAATGGTAATTTT--G-G-T-GAAATCGGGGTTA
*
26679908 AAAATAGTAATTTTTGGTGAAA-CTGGGGTTA
1 AAAATGGTAA-TTTTGGTGAAATC-GGGGTTA
** *** *
26679939 AAAATGG-AATTTTAGAAGGTTTAGGGG-T-
1 AAAATGGTAATTTT-GGTGAAATCGGGGTTA
* *
26679967 AAAATGGTAATTTTTAGTGAAATCGAGGTTA
1 AAAATGGTAA-TTTTGGTGAAATCGGGGTTA
** *** *
26679998 AAAATGG-AATTTTAGAAGGTTTAGGGG-T-
1 AAAATGGTAATTTT-GGTGAAATCGGGGTTA
*
26680026 AAAATGGTAATTTTTGGTGAAATTGGGGTTA
1 AAAATGGTAA-TTTTGGTGAAATCGGGGTTA
26680057 AAAATGG-AATTTTGG
1 AAAATGGTAATTTTGG
26680072 AAAGTTTAGG
Statistics
Matches: 182, Mismatches: 48, Indels: 49
0.65 0.17 0.18
Matches are distributed among these distances:
28 22 0.12
29 54 0.30
30 56 0.31
31 35 0.19
32 8 0.04
33 6 0.03
34 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.34
Consensus pattern (30 bp):
AAAATGGTAATTTTGGTGAAATCGGGGTTA
Found at i:26679878 original size:59 final size:58
Alignment explanation
Indices: 26679788--26680155 Score: 426
Period size: 59 Copynumber: 6.2 Consensus size: 58
26679778 ACTCTAGGGC
* * * **
26679788 AAAATGGTAA-TTTTGGTGAAATCGAGTTTAAAAATGGAATTTTTGAGAGTTCGGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGA-AGTTTAGGGGT
*
26679846 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTA-AGAGTTCGTAGGGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGA-AGTT--TA--GGGGT
*
26679908 AAAATAGTAATTTTTGGTGAAA-CTGGGGTTAAAAATGGAATTTTAGAAGGTTTAGGGGT
1 AAAATGGTAATTTTTGGTGAAATC-GGGGTTAAAAATGGAATTTTAGAA-GTTTAGGGGT
* *
26679967 AAAATGGTAATTTTTAGTGAAATCGAGGTTAAAAATGGAATTTTAGAAGGTTTAGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAA-GTTTAGGGGT
* *
26680026 AAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAAAGTTTA-GGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAG-AAGTTTAGGGGT
* * * *
26680084 AAAATAGTAATTTTT-G-GAAGTTTTGGGGTT-AAAATGGAATTTTGGAAAGTTTAGGGGT
1 AAAATGGTAATTTTTGGTGAA--ATCGGGGTTAAAAATGGAATTTTAG-AAGTTTAGGGGT
*
26680142 AAAATGATAATTTT
1 AAAATGGTAATTTT
26680156 GGAAGTTTCA
Statistics
Matches: 278, Mismatches: 19, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
56 3 0.01
57 24 0.09
58 58 0.21
59 136 0.49
60 3 0.01
61 3 0.01
62 47 0.17
63 4 0.01
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.35
Consensus pattern (58 bp):
AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAGTTTAGGGGT
Found at i:26680083 original size:29 final size:28
Alignment explanation
Indices: 26679933--26680183 Score: 174
Period size: 29 Copynumber: 8.6 Consensus size: 28
26679923 GGTGAAACTG
* *
26679933 GGGTTAAAAATGGAATTTTAGAAGGTTTA
1 GGGTT-AAAATGGAATTTTGGAAAGTTTA
* **
26679962 GGGGTAAAATGGTAATTTTTAGTGAAA-TCGA
1 GGGTTAAAATGG-AA-TTTT-G-GAAAGTTTA
* *
26679993 -GGTTAAAAATGGAATTTTAGAAGGTTTA
1 GGGTT-AAAATGGAATTTTGGAAAGTTTA
* *
26680021 GGGGTAAAATGGTAATTTTTGGTGAAA--TTG
1 GGGTTAAAATGG-AA-TTTT-G-GAAAGTTTA
26680051 GGGTTAAAAATGGAATTTTGGAAAGTTTA
1 GGGTT-AAAATGGAATTTTGGAAAGTTTA
* *
26680080 GGG-TAAAATAGTAATTTTTGG-AAGTTTTG
1 GGGTTAAAAT-GGAA-TTTTGGAAAG-TTTA
26680109 GGGTTAAAATGGAATTTTGGAAAGTTTA
1 GGGTTAAAATGGAATTTTGGAAAGTTTA
* *
26680137 GGGGTAAAATGATAATTTTGG-AAGTTTCA
1 GGGTTAAAATG-GAATTTTGGAAAGTTT-A
* *
26680166 GGGTCAAAATGTAATTTT
1 GGGTTAAAATGGAATTTT
26680184 TGGATTGTTT
Statistics
Matches: 177, Mismatches: 24, Indels: 43
0.73 0.10 0.18
Matches are distributed among these distances:
27 12 0.07
28 56 0.32
29 60 0.34
30 27 0.15
31 16 0.09
32 6 0.03
ACGTcount: A:0.35, C:0.01, G:0.28, T:0.36
Consensus pattern (28 bp):
GGGTTAAAATGGAATTTTGGAAAGTTTA
Found at i:26680548 original size:162 final size:162
Alignment explanation
Indices: 26680257--26680590 Score: 442
Period size: 162 Copynumber: 2.1 Consensus size: 162
26680247 GGCATCCTGA
*
26680257 AGTCAAAGGACTAATTTAAAAATCTTGAAAAATTTCTGAGCCAATTTTGTAATTAAACAGAACTT
1 AGTCAAAGGACTAATTTAAAAATCTTGAAAAATTTCTGAGCCAATTTTGTAATTAAACAAAACTT
* * * * ** *
26680322 GATTTTGAGACTAAATTAAAACAAATTAAAAGTGACAGGGACTAGATACTGAAATAAACCAAAAA
66 GATTTAGAGACTAAATTAAAACAAATTAAAAATAAAAGAAACTAAATACTGAAATAAACCAAAAA
*
26680387 GTGACACGTGG-AGGCCTCTGGTGCAGTCAAAC
131 GTGACACGTGGCA-GCCTCTAGTGCAGTCAAAC
* * * * *
26680419 AGTCAAAGGACTAATTTATAAATCTTGAAAAA-TTCTTGGGTCAATTTTGTAATTAAATAAAAGT
1 AGTCAAAGGACTAATTTAAAAATCTTGAAAAATTTC-TGAGCCAATTTTGTAATTAAACAAAACT
* * *
26680483 TGATTTA-AGGACTAAATTAAAACAAATTAAAAATAAAATAAACTAAATGCAT-AAATAAGCCAA
65 TGATTTAGA-GACTAAATTAAAACAAATTAAAAATAAAAGAAACTAAATAC-TGAAATAAACCAA
*
26680546 AAAGTGACACGTGGCAGCCTCTAGTGTAGTCAAAC
128 AAAGTGACACGTGGCAGCCTCTAGTGCAGTCAAAC
26680581 AGTCAAAGGA
1 AGTCAAAGGA
26680591 TTAAATTGAA
Statistics
Matches: 150, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
161 4 0.03
162 144 0.96
163 2 0.01
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (162 bp):
AGTCAAAGGACTAATTTAAAAATCTTGAAAAATTTCTGAGCCAATTTTGTAATTAAACAAAACTT
GATTTAGAGACTAAATTAAAACAAATTAAAAATAAAAGAAACTAAATACTGAAATAAACCAAAAA
GTGACACGTGGCAGCCTCTAGTGCAGTCAAAC
Found at i:26680815 original size:10 final size:11
Alignment explanation
Indices: 26680790--26680815 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26680780 ATTCAGATTT
26680790 TTTTTATTTCA
1 TTTTTATTTCA
26680801 TTTTTATTTCA
1 TTTTTATTTCA
26680812 TTTT
1 TTTT
26680816 CAAACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTATTTCA
Found at i:26681147 original size:24 final size:23
Alignment explanation
Indices: 26681112--26681156 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
26681102 CTTTTTCTTT
*
26681112 TAAAT-CCTTTTTTATTTTAAAAC
1 TAAATCCCTTTTTT-CTTTAAAAC
26681135 TAAACTCCCTTTTTTCTTTAAA
1 TAAA-TCCCTTTTTTCTTTAAA
26681157 GACCAAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.21
24 7 0.37
25 8 0.42
ACGTcount: A:0.31, C:0.18, G:0.00, T:0.51
Consensus pattern (23 bp):
TAAATCCCTTTTTTCTTTAAAAC
Found at i:26681164 original size:25 final size:25
Alignment explanation
Indices: 26681117--26681164 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
26681107 TCTTTTAAAT
* *
26681117 CCTTTTTTATTTTAAAACTAAACTC
1 CCTTTTTTACTTTAAAACCAAACTC
26681142 CCTTTTTT-CTTTAAAGACCAAAC
1 CCTTTTTTACTTTAAA-ACCAAAC
26681165 CCAGATCTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.31, C:0.23, G:0.02, T:0.44
Consensus pattern (25 bp):
CCTTTTTTACTTTAAAACCAAACTC
Found at i:26681194 original size:15 final size:16
Alignment explanation
Indices: 26681165--26681196 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26681155 AAGACCAAAC
26681165 CCAGATCTGGGAAAAT
1 CCAGATCTGGGAAAAT
*
26681181 CCAGATCTGGAAAAAT
1 CCAGATCTGGGAAAAT
26681197 TTCTAAATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.19
Consensus pattern (16 bp):
CCAGATCTGGGAAAAT
Found at i:26681465 original size:16 final size:16
Alignment explanation
Indices: 26681446--26681533 Score: 61
Period size: 16 Copynumber: 5.1 Consensus size: 16
26681436 TTAATGGTTG
26681446 ATATTATTAATTATTA
1 ATATTATTAATTATTA
*
26681462 ATATTAATTATAATTATAA
1 ATATT-A-T-TAATTATTA
26681481 ATATTTATTACTATTATTA
1 ATA-TTATTA--ATTATTA
*
26681500 ATTATTA-TGATTATTA
1 A-TATTATTAATTATTA
* **
26681516 ATAATATTTTTTATTA
1 ATATTATTAATTATTA
26681532 AT
1 AT
26681534 GATATTTATG
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
15 4 0.07
16 22 0.38
17 3 0.05
18 3 0.05
19 22 0.38
20 4 0.07
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (16 bp):
ATATTATTAATTATTA
Found at i:26681468 original size:13 final size:13
Alignment explanation
Indices: 26681448--26681533 Score: 54
Period size: 13 Copynumber: 6.7 Consensus size: 13
26681438 AATGGTTGAT
26681448 ATTATTAATTATTA
1 ATTATTAA-TATTA
26681462 A-TATTAAT-TATA
1 ATTATTAATAT-TA
* *
26681474 ATTATAAATATTT
1 ATTATTAATATTA
* *
26681487 ATTACTATTATTA
1 ATTATTAATATTA
26681500 ATTATT-ATGATT-
1 ATTATTAAT-ATTA
* *
26681512 ATTAATAATATTT
1 ATTATTAATATTA
*
26681525 TTTATTAAT
1 ATTATTAAT
26681534 GATATTTATG
Statistics
Matches: 55, Mismatches: 11, Indels: 13
0.70 0.14 0.16
Matches are distributed among these distances:
11 1 0.02
12 13 0.24
13 39 0.71
14 2 0.04
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (13 bp):
ATTATTAATATTA
Found at i:26681475 original size:6 final size:7
Alignment explanation
Indices: 26681448--26681517 Score: 67
Period size: 7 Copynumber: 10.3 Consensus size: 7
26681438 AATGGTTGAT
26681448 ATTATTA
1 ATTATTA
26681455 ATTATTA
1 ATTATTA
26681462 A-TATTA
1 ATTATTA
26681468 ATTA-TA
1 ATTATTA
26681474 ATTA-TA
1 ATTATTA
* *
26681480 AATATTT
1 ATTATTA
*
26681487 ATTACT-
1 ATTATTA
26681493 ATTATTA
1 ATTATTA
26681500 ATTATTA
1 ATTATTA
26681507 TGATTATTA
1 --ATTATTA
26681516 AT
1 AT
26681518 AATATTTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
6 22 0.42
7 24 0.45
9 7 0.13
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (7 bp):
ATTATTA
Found at i:26681477 original size:19 final size:19
Alignment explanation
Indices: 26681447--26681523 Score: 65
Period size: 19 Copynumber: 4.2 Consensus size: 19
26681437 TAATGGTTGA
*
26681447 TATTATTAATTATTAATAT
1 TATTACTAATTATTAATAT
*
26681466 TAATTA-TAATTATAAATATT
1 T-ATTACTAATTATTAATA-T
26681486 TATTACT-ATTATT-A-AT
1 TATTACTAATTATTAATAT
* *
26681502 TATTA-TGATTATTAATAA
1 TATTACTAATTATTAATAT
26681520 TATT
1 TATT
26681524 TTTTATTAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
15 1 0.02
16 12 0.24
17 2 0.04
18 6 0.12
19 21 0.43
20 7 0.14
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (19 bp):
TATTACTAATTATTAATAT
Found at i:26681538 original size:16 final size:16
Alignment explanation
Indices: 26681510--26681540 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26681500 ATTATTATGA
26681510 TTATTAATAATATTTT
1 TTATTAATAATATTTT
*
26681526 TTATTAATGATATTT
1 TTATTAATAATATTT
26681541 ATGAAATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (16 bp):
TTATTAATAATATTTT
Found at i:26682271 original size:12 final size:13
Alignment explanation
Indices: 26682248--26682303 Score: 51
Period size: 15 Copynumber: 4.0 Consensus size: 13
26682238 GACCTTGTAC
26682248 TTTTTAATTTAAA
1 TTTTTAATTTAAA
26682261 TTTTTAA-TTAAA
1 TTTTTAATTTAAA
*
26682273 TTTAAATTTATTTCAAA
1 TTT---TTAATTT-AAA
26682290 TATTTTAATTTAAA
1 T-TTTTAATTTAAA
26682304 ATGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
12 8 0.23
13 7 0.20
14 3 0.09
15 9 0.26
16 2 0.06
17 4 0.11
18 2 0.06
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTTTAATTTAAA
Found at i:26684278 original size:2 final size:2
Alignment explanation
Indices: 26684271--26684297 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26684261 ATACATACAT
26684271 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
26684298 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:26684476 original size:6 final size:6
Alignment explanation
Indices: 26684451--26684489 Score: 60
Period size: 6 Copynumber: 6.2 Consensus size: 6
26684441 AATGAGCACG
26684451 ATATGA ACTATGA TATATGA ATATGA ATATGA ATATGA A
1 ATATGA A-TATGA -ATATGA ATATGA ATATGA ATATGA A
26684490 CATATATGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 20 0.65
7 10 0.32
8 1 0.03
ACGTcount: A:0.49, C:0.03, G:0.15, T:0.33
Consensus pattern (6 bp):
ATATGA
Found at i:26696303 original size:21 final size:21
Alignment explanation
Indices: 26696277--26696321 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
26696267 TACACACGTG
26696277 TTATGGATTCATATTTAGGGT
1 TTATGGATTCATATTTAGGGT
26696298 TTATGGATTCATATTTAGGGT
1 TTATGGATTCATATTTAGGGT
26696319 TTA
1 TTA
26696322 AAGTTTAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.04, G:0.22, T:0.49
Consensus pattern (21 bp):
TTATGGATTCATATTTAGGGT
Found at i:26696687 original size:4 final size:4
Alignment explanation
Indices: 26696674--26696702 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
26696664 TATATTTTTG
26696674 TTAA -TAA TTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
26696703 TGTTGAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:26699341 original size:23 final size:23
Alignment explanation
Indices: 26699315--26699365 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
26699305 TCAACAAGAT
26699315 GGGTTAGTCAAAGTCAATGGGTC
1 GGGTTAGTCAAAGTCAATGGGTC
*
26699338 GGGTTGGTCAAAGTCAATGGGTC
1 GGGTTAGTCAAAGTCAATGGGTC
26699361 GGGTT
1 GGGTT
26699366 CGATTCGGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.22, C:0.12, G:0.39, T:0.27
Consensus pattern (23 bp):
GGGTTAGTCAAAGTCAATGGGTC
Found at i:26700591 original size:15 final size:15
Alignment explanation
Indices: 26700571--26700606 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
26700561 AGAACTCGAT
26700571 AAGGACCGATATAAC
1 AAGGACCGATATAAC
26700586 AAGGACCGATATAAC
1 AAGGACCGATATAAC
26700601 AAGGAC
1 AAGGAC
26700607 TCAACTTGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.11
Consensus pattern (15 bp):
AAGGACCGATATAAC
Found at i:26702995 original size:15 final size:15
Alignment explanation
Indices: 26702975--26703013 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
26702965 TGAGTTTCTT
**
26702975 AGGTGCCATTCGGTA
1 AGGTGCCATTCAATA
26702990 AGGTGCCATTCAATA
1 AGGTGCCATTCAATA
26703005 AGGTGCCAT
1 AGGTGCCAT
26703014 AGATATAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (15 bp):
AGGTGCCATTCAATA
Found at i:26730289 original size:19 final size:20
Alignment explanation
Indices: 26730247--26730292 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
26730237 ACACATATTT
* *
26730247 ATCACATTTGATCATATATA
1 ATCACATTTAATCACATATA
26730267 ATCACATTTAATCACAT-TA
1 ATCACATTTAATCACATATA
26730286 ATCACAT
1 ATCACAT
26730293 GAATATTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (20 bp):
ATCACATTTAATCACATATA
Found at i:26730306 original size:23 final size:23
Alignment explanation
Indices: 26730280--26730513 Score: 118
Period size: 23 Copynumber: 9.9 Consensus size: 23
26730270 ACATTTAATC
*
26730280 ACATTAATCACATGAATATTTCA
1 ACATTAATCACATTAATATTTCA
* *
26730303 ACATTTATCACATCACATATTAATC-
1 ACATTAATCACATTA-ATATT--TCA
* *
26730328 ACATTTAGTCACATGAATATTTCA
1 ACA-TTAATCACATTAATATTTCA
* * *
26730352 ATATTTATCACATCACATATTAATC-
1 ACATTAATCACATTA-ATATT--TCA
*
26730377 ACATTTAATCAAATTAATATTTCA
1 ACA-TTAATCACATTAATATTTCA
* ** * *
26730401 GCACAAATGACATTAATATTTAA
1 ACATTAATCACATTAATATTTCA
** *
26730424 ACACAAATGACATTAATATTT-A
1 ACATTAATCACATTAATATTTCA
*
26730446 AGCATAAATCACATTAAT-TTTCA
1 A-CATTAATCACATTAATATTTCA
* * *
26730469 AGTATAAATCATATTAATATTT-A
1 A-CATTAATCACATTAATATTTCA
** *
26730492 AGCAGAAATCACATTCATATTT
1 A-CATTAATCACATTAATATTT
26730514 AATTATCTTT
Statistics
Matches: 170, Mismatches: 28, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
22 5 0.03
23 111 0.65
24 17 0.10
25 15 0.09
26 22 0.13
ACGTcount: A:0.44, C:0.16, G:0.04, T:0.36
Consensus pattern (23 bp):
ACATTAATCACATTAATATTTCA
Found at i:26730346 original size:49 final size:49
Alignment explanation
Indices: 26730267--26730400 Score: 218
Period size: 49 Copynumber: 2.8 Consensus size: 49
26730257 ATCATATATA
26730267 ATCACAT-TTAATCACA-TTAATCACATGAATATTTCAACATTTATCAC
1 ATCACATATTAATCACATTTAATCACATGAATATTTCAACATTTATCAC
* *
26730314 ATCACATATTAATCACATTTAGTCACATGAATATTTCAATATTTATCAC
1 ATCACATATTAATCACATTTAATCACATGAATATTTCAACATTTATCAC
* *
26730363 ATCACATATTAATCACATTTAATCAAATTAATATTTCA
1 ATCACATATTAATCACATTTAATCACATGAATATTTCA
26730401 GCACAAATGA
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
47 7 0.09
48 9 0.11
49 64 0.80
ACGTcount: A:0.41, C:0.19, G:0.02, T:0.38
Consensus pattern (49 bp):
ATCACATATTAATCACATTTAATCACATGAATATTTCAACATTTATCAC
Found at i:26730462 original size:69 final size:69
Alignment explanation
Indices: 26730383--26730515 Score: 169
Period size: 69 Copynumber: 1.9 Consensus size: 69
26730373 AATCACATTT
* *
26730383 AATCAAATTAATATTTC-AGCACAAATGACATTAATATTTAAACACAAATGACATTAATATTTAA
1 AATCAAATTAAT-TTTCAAGCACAAATCACATTAATATTTAAACACAAATCACATTAATATTTAA
26730447 GCATA
65 GCATA
* * * * * * *
26730452 AATCACATTAATTTTCAAGTATAAATCATATTAATATTTAAGCAGAAATCACATTCATATTTAA
1 AATCAAATTAATTTTCAAGCACAAATCACATTAATATTTAAACACAAATCACATTAATATTTAA
26730516 TTATCTTTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
68 4 0.07
69 50 0.93
ACGTcount: A:0.47, C:0.13, G:0.05, T:0.35
Consensus pattern (69 bp):
AATCAAATTAATTTTCAAGCACAAATCACATTAATATTTAAACACAAATCACATTAATATTTAAG
CATA
Found at i:26730514 original size:23 final size:23
Alignment explanation
Indices: 26730383--26730515 Score: 151
Period size: 23 Copynumber: 5.8 Consensus size: 23
26730373 AATCACATTT
* *
26730383 AATCAAATTAATATTTCAGCACA
1 AATCACATTAATATTTAAGCACA
* *
26730406 AATGACATTAATATTTAAACACA
1 AATCACATTAATATTTAAGCACA
* *
26730429 AATGACATTAATATTTAAGCATA
1 AATCACATTAATATTTAAGCACA
* *
26730452 AATCACATTAAT-TTTCAAGTATA
1 AATCACATTAATATTT-AAGCACA
* *
26730475 AATCATATTAATATTTAAGCAGA
1 AATCACATTAATATTTAAGCACA
*
26730498 AATCACATTCATATTTAA
1 AATCACATTAATATTTAA
26730516 TTATCTTTTA
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
22 3 0.03
23 89 0.94
24 3 0.03
ACGTcount: A:0.47, C:0.13, G:0.05, T:0.35
Consensus pattern (23 bp):
AATCACATTAATATTTAAGCACA
Found at i:26730597 original size:10 final size:10
Alignment explanation
Indices: 26730582--26730647 Score: 87
Period size: 10 Copynumber: 6.6 Consensus size: 10
26730572 CATCACAGAT
26730582 TAATCACATA
1 TAATCACATA
*
26730592 TAATCACATT
1 TAATCACATA
26730602 TAATCACATA
1 TAATCACATA
*
26730612 TAACCACATA
1 TAATCACATA
* *
26730622 TAGTCACTTA
1 TAATCACATA
*
26730632 TAATCACATT
1 TAATCACATA
26730642 TAATCA
1 TAATCA
26730648 TATTTTATGA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 47 1.00
ACGTcount: A:0.44, C:0.21, G:0.02, T:0.33
Consensus pattern (10 bp):
TAATCACATA
Found at i:26730606 original size:20 final size:20
Alignment explanation
Indices: 26730581--26730647 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
26730571 TCATCACAGA
26730581 TTAATCACATATAATCACAT
1 TTAATCACATATAATCACAT
*
26730601 TTAATCACATATAACCACAT
1 TTAATCACATATAATCACAT
* * *
26730621 ATAGTCACTTATAATCACAT
1 TTAATCACATATAATCACAT
26730641 TTAATCA
1 TTAATCA
26730648 TATTTTATGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.43, C:0.21, G:0.01, T:0.34
Consensus pattern (20 bp):
TTAATCACATATAATCACAT
Found at i:26730837 original size:66 final size:64
Alignment explanation
Indices: 26730722--26730856 Score: 177
Period size: 66 Copynumber: 2.1 Consensus size: 64
26730712 GATACACGGA
*
26730722 TCTCCAAACACACCAAATAACTCAAAGTCAAACATATCCCATAAGTGAAGCAT-ATAGCTAACAC
1 TCTCCAAACACACCAAATAACTCAAAGTCAAACATATCCCAAAAGTGAAGCATAAT-GCTAACAC
*
26730786 TCTCCAAACACACCAAA-AGACTCATACAGTCAAACA-AGTCCCAAAAGTGAAGCGTAATGCTAA
1 TCTCCAAACACACCAAATA-ACTCA-A-AGTCAAACATA-TCCCAAAAGTGAAGCATAATGCTAA
*
26730849 GAC
62 CAC
26730852 TCTCC
1 TCTCC
26730857 TTATTTCCCC
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
63 1 0.02
64 22 0.35
65 2 0.03
66 36 0.57
67 2 0.03
ACGTcount: A:0.43, C:0.29, G:0.10, T:0.18
Consensus pattern (64 bp):
TCTCCAAACACACCAAATAACTCAAAGTCAAACATATCCCAAAAGTGAAGCATAATGCTAACAC
Found at i:26731138 original size:36 final size:36
Alignment explanation
Indices: 26731093--26731277 Score: 291
Period size: 36 Copynumber: 5.1 Consensus size: 36
26731083 ATAATCACTG
* *
26731093 TCACATGGCATGAA-AAGCATACCCACATATTTATTG
1 TCACATGGCATGAATAA-CATACCCACATATTTACTA
* *
26731129 TCACATGGCATGAATAACACACCTACATATTTACTA
1 TCACATGGCATGAATAACATACCCACATATTTACTA
26731165 TCACATGGCATGAATAACATACCCACATATTTACTA
1 TCACATGGCATGAATAACATACCCACATATTTACTA
* *
26731201 TCTCATGACATGAATAACATACCCACATATTTACTA
1 TCACATGGCATGAATAACATACCCACATATTTACTA
*
26731237 TCACATGGCATGAATAACATACCCACATATTTACTT
1 TCACATGGCATGAATAACATACCCACATATTTACTA
26731273 TCACA
1 TCACA
26731278 ACAGTCATGA
Statistics
Matches: 137, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
36 135 0.99
37 2 0.01
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.29
Consensus pattern (36 bp):
TCACATGGCATGAATAACATACCCACATATTTACTA
Found at i:26731929 original size:148 final size:148
Alignment explanation
Indices: 26731749--26732044 Score: 538
Period size: 148 Copynumber: 2.0 Consensus size: 148
26731739 AATTCCATTC
*
26731749 ATCTACATATTCATCTCCAGCTAATTCTTAACCTTTAAACTACCAAAAACTACACATTTTAAGGT
1 ATCTACATATTCATCTCCAGCTAATTCTTAACCTTTAAACTACCAAAAACTAAACATTTTAAGGT
26731814 ATCAAAATGTTTCAACATACAATTGCTATAATAACGAAAATTTATTAAAAACTCAAGAAATCTTT
66 ATCAAAATGTTTCAACATACAATTGCTATAATAACGAAAATTTATTAAAAACTCAAGAAATCTTT
26731879 AACGAAACTTCAAAGTAA
131 AACGAAACTTCAAAGTAA
* *
26731897 ATCTACATATTCATCTCTAGCTAATTCTTAACCTTTAAACTACCAAAAACTAAACGTTTTAAGGT
1 ATCTACATATTCATCTCCAGCTAATTCTTAACCTTTAAACTACCAAAAACTAAACATTTTAAGGT
* * *
26731962 ATCAAAATGTTTCGACATATAATTGCTATAATAACGAAACTTTATTAAAAACTCAAGAAATCTTT
66 ATCAAAATGTTTCAACATACAATTGCTATAATAACGAAAATTTATTAAAAACTCAAGAAATCTTT
26732027 AACGAAACTTCAAAGTAA
131 AACGAAACTTCAAAGTAA
26732045 CTTTAGAAAC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
148 142 1.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (148 bp):
ATCTACATATTCATCTCCAGCTAATTCTTAACCTTTAAACTACCAAAAACTAAACATTTTAAGGT
ATCAAAATGTTTCAACATACAATTGCTATAATAACGAAAATTTATTAAAAACTCAAGAAATCTTT
AACGAAACTTCAAAGTAA
Found at i:26733408 original size:36 final size:36
Alignment explanation
Indices: 26733368--26733459 Score: 166
Period size: 36 Copynumber: 2.6 Consensus size: 36
26733358 CTTGGTCTTA
*
26733368 ATGAAGAACAAACAATTCCTCCTGATGTTGGCATTG
1 ATGAAGAACAAACAATTCCTCCTAATGTTGGCATTG
*
26733404 ATGAAGAACAAACAATTCCCCCTAATGTTGGCATTG
1 ATGAAGAACAAACAATTCCTCCTAATGTTGGCATTG
26733440 ATGAAGAACAAACAATTCCT
1 ATGAAGAACAAACAATTCCT
26733460 TCTTTGGATA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (36 bp):
ATGAAGAACAAACAATTCCTCCTAATGTTGGCATTG
Found at i:26736672 original size:14 final size:14
Alignment explanation
Indices: 26736653--26736680 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26736643 AACATGAAAG
26736653 AAAACATTTTTCAT
1 AAAACATTTTTCAT
26736667 AAAACATTTTTCAT
1 AAAACATTTTTCAT
26736681 CTTCTTCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (14 bp):
AAAACATTTTTCAT
Found at i:26740899 original size:18 final size:18
Alignment explanation
Indices: 26740873--26740918 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
26740863 ACGCAGCCTG
26740873 ATCAGATGCAGTCACATA
1 ATCAGATGCAGTCACATA
* * *
26740891 CTGAGATGCAGTCATATA
1 ATCAGATGCAGTCACATA
26740909 ATCAGATGCA
1 ATCAGATGCA
26740919 ACCACATGCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (18 bp):
ATCAGATGCAGTCACATA
Found at i:26761411 original size:25 final size:25
Alignment explanation
Indices: 26761376--26761448 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
26761366 TGGTTAAACT
*
26761376 CTATTTGGGCTTGTAAGAGCTAACC
1 CTATTTGGGCTCGTAAGAGCTAACC
* * *
26761401 TTATTTTGGCTCGTAAGAGTTAACC
1 CTATTTGGGCTCGTAAGAGCTAACC
* *
26761426 CTATCTGGGCTCGTATGAGCTAA
1 CTATTTGGGCTCGTAAGAGCTAA
26761449 TCCTGTCTGA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.34
Consensus pattern (25 bp):
CTATTTGGGCTCGTAAGAGCTAACC
Found at i:26761457 original size:25 final size:25
Alignment explanation
Indices: 26761376--26761466 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
26761366 TGGTTAAACT
* * *
26761376 CTATTTGGGCTTGTAAGAGCTAACC
1 CTATCTGGGCTCGTATGAGCTAACC
* * * * *
26761401 TTATTTTGGCTCGTAAGAGTTAACC
1 CTATCTGGGCTCGTATGAGCTAACC
*
26761426 CTATCTGGGCTCGTATGAGCTAATC
1 CTATCTGGGCTCGTATGAGCTAACC
* *
26761451 CTGTCTGAGCTCGTAT
1 CTATCTGGGCTCGTAT
26761467 TACCTAAATT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (25 bp):
CTATCTGGGCTCGTATGAGCTAACC
Found at i:26764112 original size:29 final size:28
Alignment explanation
Indices: 26764070--26764146 Score: 120
Period size: 27 Copynumber: 2.8 Consensus size: 28
26764060 TAATTTAAAT
*
26764070 TATTTGCACTAATTAACTTTTTTTTTGAA
1 TATTTGCATTAATTAA-TTTTTTTTTGAA
26764099 TATTTGCATTAATTAA-TTTTTTTTGAA
1 TATTTGCATTAATTAATTTTTTTTTGAA
*
26764126 TAATTGCATTAATTAATTTTT
1 TATTTGCATTAATTAATTTTT
26764147 GTTACTTATC
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 26 0.58
28 4 0.09
29 15 0.33
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.57
Consensus pattern (28 bp):
TATTTGCATTAATTAATTTTTTTTTGAA
Found at i:26767891 original size:25 final size:25
Alignment explanation
Indices: 26767863--26767914 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
26767853 ATATTGGTTA
*
26767863 AACTCTATCTGGGCTCGT-TAGAGCT
1 AACTCTATCTAGGCTCGTAT-GAGCT
26767888 AACTCTATCTAGGCTCGTATGAGCT
1 AACTCTATCTAGGCTCGTATGAGCT
26767913 AA
1 AA
26767915 ATTTCTGGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (25 bp):
AACTCTATCTAGGCTCGTATGAGCT
Found at i:26769550 original size:14 final size:13
Alignment explanation
Indices: 26769532--26769556 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26769522 GAATCAAGCA
26769532 AAAAAATCCAAAT
1 AAAAAATCCAAAT
26769545 AAAAAATCCAAA
1 AAAAAATCCAAA
26769557 GTCCAAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.16, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATCCAAAT
Found at i:26769570 original size:20 final size:20
Alignment explanation
Indices: 26769547--26769594 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26769537 ATCCAAATAA
26769547 AAAATCCAAAGTCCAAAACC
1 AAAATCCAAAGTCCAAAACC
* * *
26769567 AAAAACCAAATTCCAAAATC
1 AAAATCCAAAGTCCAAAACC
*
26769587 AAAGTCCA
1 AAAATCCA
26769595 CAGTAAATAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.56, C:0.27, G:0.04, T:0.12
Consensus pattern (20 bp):
AAAATCCAAAGTCCAAAACC
Found at i:26769689 original size:15 final size:15
Alignment explanation
Indices: 26769669--26769698 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26769659 CGAGAGCGTG
26769669 TAACACCTCAAAATT
1 TAACACCTCAAAATT
26769684 TAACACCTCAAAATT
1 TAACACCTCAAAATT
26769699 GGGCATTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.27
Consensus pattern (15 bp):
TAACACCTCAAAATT
Found at i:26771452 original size:23 final size:23
Alignment explanation
Indices: 26771421--26771691 Score: 347
Period size: 23 Copynumber: 12.0 Consensus size: 23
26771411 TAATGCATTA
26771421 TATG-TTAAAAGTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
** *
26771443 TACACTTAAAAGATAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
26771466 TATGCTTAAAAGTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
**
26771489 TACACTTAAAAGTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
*
26771512 TATGCTTAAAATTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
26771535 TATGCTTAAAAGTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
* *
26771558 TTTGCTTAAAAG-TATATGCGATT
1 TATGCTTAAAAGTTA-ATGTGATT
*
26771581 TATGCTTAAAATTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
* *
26771604 TTTGCTTAAAAGTTGA--TG--T
1 TATGCTTAAAAGTTAATGTGATT
* *
26771623 TATACTTAAAATTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
26771646 TATGCTTAAAAGTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
* * *
26771669 TATGCTCAAATGATAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
26771692 AATGTGTAAA
Statistics
Matches: 213, Mismatches: 29, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
19 13 0.06
21 4 0.02
22 4 0.02
23 190 0.89
24 2 0.01
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (23 bp):
TATGCTTAAAAGTTAATGTGATT
Found at i:26772825 original size:3 final size:3
Alignment explanation
Indices: 26772817--26772857 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
26772807 TAGTGTGGGT
26772817 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26772858 GAATTTAACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:26773181 original size:49 final size:49
Alignment explanation
Indices: 26773113--26773208 Score: 129
Period size: 49 Copynumber: 2.0 Consensus size: 49
26773103 CCAAAAATAG
* * *
26773113 AATAGTGTGGTCAAACCACCAGATATTGCAGATTTACTGCCAGATACAA
1 AATAGTGTGGACAAACCACCAGATAATGCAAATTTACTGCCAGATACAA
* * * *
26773162 AATATTGTGGACAATCCACCAGATAATGCAAATTTATTGTCAGATAC
1 AATAGTGTGGACAAACCACCAGATAATGCAAATTTACTGCCAGATAC
26773209 TTCCTCTGTA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.27
Consensus pattern (49 bp):
AATAGTGTGGACAAACCACCAGATAATGCAAATTTACTGCCAGATACAA
Found at i:26776461 original size:71 final size:72
Alignment explanation
Indices: 26776345--26776482 Score: 208
Period size: 71 Copynumber: 1.9 Consensus size: 72
26776335 TCATTCATTC
*
26776345 TTGAGTAATAGAAATTACTTAGCATTTACTCTTGCTTTTCTTGTC-TTTTTACATTTCTTGCATT
1 TTGAGTAATAGAAATTACTTAGCATTAACTCTTGCTTTTCTTGTCTTTTTTACATTTCTTGCATT
26776409 TTAATTT
66 TTAATTT
* * * *
26776416 TTGAGTAATAGAAATTGCTTAGCATTAACT-TTGGTTTCTCTTGTCTTTTTTACTTTTCTTGTAT
1 TTGAGTAATAGAAATTACTTAGCATTAACTCTTGCTTT-TCTTGTCTTTTTTACATTTCTTGCAT
26776480 TTT
65 TTT
26776483 TATCTTTTTA
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
70 6 0.10
71 35 0.58
72 19 0.32
ACGTcount: A:0.21, C:0.13, G:0.12, T:0.54
Consensus pattern (72 bp):
TTGAGTAATAGAAATTACTTAGCATTAACTCTTGCTTTTCTTGTCTTTTTTACATTTCTTGCATT
TTAATTT
Found at i:26777031 original size:17 final size:17
Alignment explanation
Indices: 26777009--26777046 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
26776999 TGATGTTTAG
26777009 ATTTTTT-TCAGTTAAAT
1 ATTTTTTAT-AGTTAAAT
*
26777026 ATTTTTTATATTTAAAT
1 ATTTTTTATAGTTAAAT
26777043 ATTT
1 ATTT
26777047 AATTCAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 18 0.95
18 1 0.05
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (17 bp):
ATTTTTTATAGTTAAAT
Found at i:26778916 original size:43 final size:43
Alignment explanation
Indices: 26778859--26779289 Score: 401
Period size: 43 Copynumber: 10.0 Consensus size: 43
26778849 ATGCCACTAT
*
26778859 AGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAT
1 AGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
* * *
26778902 AGAACATGGTCTTTAGCGACGCTTTCCCCACAAACGCCACTAA
1 AGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
** * * * * *
26778945 AGAACATGGTCTTTTTATTGACGCTTTCCCCACAAACACGGCTAT
1 AGAACATGGTC--TTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
* *
26778990 AGAACATGGTCTTTAGTGGCGC-TTTCCCAACAAACGCTGCTAA
1 AGAACATGGTCTTTAGCGGCGCTTTTCCC-ACAAACGCCGCTAA
* * ** * *
26779033 AGAACATGGTCTTTAACGGTGCTTTTTTCACAAATGCCGCCAA
1 AGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
* * *
26779076 AGAATATGGTCTTTAGC-G-ACTTTTACATCACAAACG-C-CTAA
1 AGAACATGGTCTTTAGCGGCGCTTTT-C-CCACAAACGCCGCTAA
* * * * *
26779117 AGAACATGGTCTTTAGCGACAC-TTTCCTCAAAAACACTGCTAA
1 AGAACATGGTCTTTAGCGGCGCTTTTCC-CACAAACGCCGCTAA
* * * *
26779160 AGAACATGGTCTTTAGTGGCGC-TTTCATCACAAATGCCGCTAT
1 AGAACATGGTCTTTAGCGGCGCTTTTC-CCACAAACGCCGCTAA
* *
26779203 AGAACATGGTCTTTAGAGGCGCTTTTCCCACAAACGCCGCTAT
1 AGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
* * * *
26779246 AGATA-ATGTTCTCTAGCGTCGTTTTTCCCACAAACGCCGCTAA
1 AGA-ACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
26779289 A
1 A
26779290 ATTAACAGAT
Statistics
Matches: 320, Mismatches: 54, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
41 31 0.10
42 10 0.03
43 233 0.73
44 9 0.03
45 37 0.12
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
AGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
Found at i:26779089 original size:131 final size:129
Alignment explanation
Indices: 26778855--26779216 Score: 410
Period size: 127 Copynumber: 2.8 Consensus size: 129
26778845 AAAAATGCCA
* *
26778855 CTATAGAACATGGTCTTTAGCGGCGCTTTTCCC-ACAAACGCCGCTATAGAACATGGTCTTTAGC
1 CTATAGAACATGGTCTTTAGCGGCGC-TTTCCCAACAAACGCTGCTAAAGAACATGGTCTTTAGC
* ** * * ** *
26778919 GACGCTTTCCCCACAAACGCCACTAAAGAACATGGTCTTTTTATTGACGCTTT-CCCCACAAACA
65 GGCGCTTTCATCACAAATGCCGCTAAAGAACATGGTCTTTTTAGCGAC-CTTTACACCAC-AA-A
*
26778983 CGG
127 CGC
* *
26778986 CTATAGAACATGGTCTTTAGTGGCGCTTTCCCAACAAACGCTGCTAAAGAACATGGTCTTTAACG
1 CTATAGAACATGGTCTTTAGCGGCGCTTTCCCAACAAACGCTGCTAAAGAACATGGTCTTTAGCG
* ** * * * *
26779051 GTGCTTTTTTCACAAATGCCGCCAAAGAATATGGTC--TTTAGCGACTTTTACATCACAAACGC
66 GCGCTTTCATCACAAATGCCGCTAAAGAACATGGTCTTTTTAGCGACCTTTACACCACAAACGC
* * * * *
26779113 CTAAAGAACATGGTCTTTAGCGACACTTTCCTCAA-AAACACTGCTAAAGAACATGGTCTTTAGT
1 CTATAGAACATGGTCTTTAGCGGCGCTTTCC-CAACAAACGCTGCTAAAGAACATGGTCTTTAGC
*
26779177 GGCGCTTTCATCACAAATGCCGCTATAGAACATGGTCTTT
65 GGCGCTTTCATCACAAATGCCGCTAAAGAACATGGTCTTT
26779217 AGAGGCGCTT
Statistics
Matches: 194, Mismatches: 32, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
127 87 0.45
128 8 0.04
129 12 0.06
130 6 0.03
131 81 0.42
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (129 bp):
CTATAGAACATGGTCTTTAGCGGCGCTTTCCCAACAAACGCTGCTAAAGAACATGGTCTTTAGCG
GCGCTTTCATCACAAATGCCGCTAAAGAACATGGTCTTTTTAGCGACCTTTACACCACAAACGC
Found at i:26779280 original size:170 final size:171
Alignment explanation
Indices: 26778847--26779283 Score: 533
Period size: 170 Copynumber: 2.5 Consensus size: 171
26778837 TTATGAGGAA
* *
26778847 AAATGCCACTATAGAACATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAACATGGT
1 AAATGCCGCTATAGAACATGGTCTTTAGAGGCGCTTTTCCCACAAACGCCGCTATAGAACATGGT
* * ** *
26778912 CTTTAGCGACGCTTTCCCCACAAACGCCACTAAAGAACATGGTCTTTTTATTGACGCTTTCCCCA
66 CTTTAGCGACGTTTTACCCACAAACG-C-CTAAAGAACATGGTC-TTTTAGCGACACTTTCCCCA
* *
26778977 CAAACACGGCTATAGAACATGGTCTTTAGTGGCGCTTTCCCAAC
128 AAAACACGGCTAAAGAACATGGTCTTTAGTGGCGCTTTCCCAAC
* * * * ** * * * *
26779021 AAACGCTGCTAAAGAACATGGTCTTTA-ACGGTGCTTTTTTCACAAATGCCGCCAAAGAATATGG
1 AAATGCCGCTATAGAACATGGTCTTTAGA-GGCGCTTTTCCCACAAACGCCGCTATAGAACATGG
* *
26779085 TCTTTAGCGAC-TTTTACATCACAAACGCCTAAAGAACATGGTC-TTTAGCGACACTTTCCTCAA
65 TCTTTAGCGACGTTTTAC-CCACAAACGCCTAAAGAACATGGTCTTTTAGCGACACTTTCCCCAA
* *
26779148 AAACACTGCTAAAGAACATGGTCTTTAGTGGCGCTTTCATC-AC
129 AAACACGGCTAAAGAACATGGTCTTTAGTGGCGCTTTC-CCAAC
*
26779191 AAATGCCGCTATAGAACATGGTCTTTAGAGGCGCTTTTCCCACAAACGCCGCTATAGATA-ATGT
1 AAATGCCGCTATAGAACATGGTCTTTAGAGGCGCTTTTCCCACAAACGCCGCTATAGA-ACATGG
* * *
26779255 TCTCTAGCGTCGTTTTTCCCACAAACGCC
65 TCTTTAGCGACGTTTTACCCACAAACGCC
26779284 GCTAAAATTA
Statistics
Matches: 220, Mismatches: 37, Indels: 16
0.81 0.14 0.06
Matches are distributed among these distances:
170 122 0.55
171 8 0.04
172 15 0.07
173 5 0.02
174 70 0.32
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (171 bp):
AAATGCCGCTATAGAACATGGTCTTTAGAGGCGCTTTTCCCACAAACGCCGCTATAGAACATGGT
CTTTAGCGACGTTTTACCCACAAACGCCTAAAGAACATGGTCTTTTAGCGACACTTTCCCCAAAA
ACACGGCTAAAGAACATGGTCTTTAGTGGCGCTTTCCCAAC
Found at i:26784746 original size:15 final size:15
Alignment explanation
Indices: 26784726--26784754 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26784716 CATCTTCTCT
26784726 AGCATACTGATGATG
1 AGCATACTGATGATG
26784741 AGCATACTGATGAT
1 AGCATACTGATGAT
26784755 AACTCGGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (15 bp):
AGCATACTGATGATG
Found at i:26785367 original size:14 final size:14
Alignment explanation
Indices: 26785348--26785380 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
26785338 ATAATTAAAT
26785348 AATTTAATATTTTG
1 AATTTAATATTTTG
26785362 AATTTAATATTTTG
1 AATTTAATATTTTG
26785376 -ATTTA
1 AATTTA
26785381 GGGTTTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (14 bp):
AATTTAATATTTTG
Found at i:26785424 original size:121 final size:121
Alignment explanation
Indices: 26785276--26785789 Score: 861
Period size: 121 Copynumber: 4.2 Consensus size: 121
26785266 TTTTATTTAA
*
26785276 TAATTAAAT-ATGTAATTATTTTAATATTTGTTCTGTTTTTAATAATTGAATATTTATTTAATAT
1 TAATTAAATAAT-TAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAATAT
*
26785340 AATTAAATAATTTAATATTTTGAATTTAATATTTTGA-TTTAGGGTTTAATAAATAAC
65 AATTAAATAATTTAATATTTTGAATTAAATA-TTTGAGTTTAGGGTTTAATAAATAAC
* *
26785397 TAATTAAATACTTAATTATTTTAATATTTATTCTATTTTTAATAATTGAATATTTATTTAATATA
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAATATA
26785462 ATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTTAGGGTTTAATAAATAAC
66 ATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTTAGGGTTTAATAAATAAC
*
26785518 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTT-AATAT
* * ** *
26785583 AATTAAATCATTTAATATTTTGAATTAAATATTTCAACTTAGTGTTTAATAAATAAC
65 AATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTTAGGGTTTAATAAATAAC
* *
26785640 TAATTAAATAATTAATTATATTAATATTTGTTATATTTTTAATAATTGAATATTTATTTAATATA
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAATATA
*
26785705 ATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTTAAGGTTTAATAAATAAC
66 ATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTTAGGGTTTAATAAATAAC
*
26785761 TAATTATATAATTAATTATTTTAATATTT
1 TAATTAAATAATTAATTATTTTAATATTT
26785790 CATAACTCTT
Statistics
Matches: 367, Mismatches: 23, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
120 5 0.01
121 248 0.68
122 114 0.31
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.51
Consensus pattern (121 bp):
TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAATATA
ATTAAATAATTTAATATTTTGAATTAAATATTTGAGTTTAGGGTTTAATAAATAAC
Found at i:26785664 original size:66 final size:64
Alignment explanation
Indices: 26785581--26785789 Score: 152
Period size: 66 Copynumber: 3.3 Consensus size: 64
26785571 TTATTTAAAT
*
26785581 ATAATTAAATCAT-TTAATATTTTGAATTAAATATTTCAACTTAGTGTTTAATAAATAACTAATT
1 ATAATT-AATTATATTAATATTTTGAATTAAATATTTCAA-TTAG-GTTTAATAAATAACTAATT
26785645 AA
63 AA
* * * * ** **
26785647 ATAATTAATTATATTAATA-TTTG--TTATAT-TTTTAA-TA-ATTGAATATTTATTTAATATAA
1 ATAATTAATTATATTAATATTTTGAATTAAATATTTCAATTAGGTTTAATAAATAACTAAT-TAA
* * * *
26785706 TTAAAT-A--AT-TTAATATTTTGAATTAAATATTTGAGTTTAAGGTTTAATAAATAACTAATTA
1 ATAATTAATTATATTAATATTTTGAATTAAATATTTCA-ATT-AGGTTTAATAAATAACTAATTA
*
26785767 T
64 A
*
26785768 ATAATTAATTATTTTAATATTT
1 ATAATTAATTATATTAATATTT
26785790 CATAACTCTT
Statistics
Matches: 106, Mismatches: 23, Indels: 28
0.68 0.15 0.18
Matches are distributed among these distances:
55 6 0.06
56 6 0.06
58 18 0.17
59 11 0.10
60 2 0.02
61 1 0.01
62 12 0.11
63 18 0.17
65 11 0.10
66 21 0.20
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (64 bp):
ATAATTAATTATATTAATATTTTGAATTAAATATTTCAATTAGGTTTAATAAATAACTAATTAA
Found at i:26785703 original size:243 final size:242
Alignment explanation
Indices: 26785276--26785789 Score: 877
Period size: 243 Copynumber: 2.1 Consensus size: 242
26785266 TTTTATTTAA
*
26785276 TAATTAAAT-ATGTAATTATTTTAATATTTGTTCTGTTTTTAATAATTGAATATTTATTTAATAT
1 TAATTAAATAAT-TAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAATAT
* ** *
26785340 AATTAAATAATTTAATATTTTGAATTTAATATTTTGATTTAGGGTTTAATAAATAACTAATTAAA
65 AATTAAATAATTTAATATTTTGAATTAAATATTTCAACTTAGGGTTTAATAAATAACTAATTAAA
* * *
26785405 TACTTAATTATTTTAATATTTATTCTATTTTTAATAATTGAATATTTATTTAATATAATTAAATA
130 TAATTAATTATATTAATATTTATTATATTTTTAATAATTGAATATTTATTTAATATAATTAAATA
*
26785470 ATTTAATATTTTGAATTAAATATTTGAGTTTAGGGTTTAATAAATAAC
195 ATTTAATATTTTGAATTAAATATTTGAGTTTAAGGTTTAATAAATAAC
*
26785518 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTTAATATTTATTTAAATAT
1 TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTT-AATAT
* *
26785583 AATTAAATCATTTAATATTTTGAATTAAATATTTCAACTTAGTGTTTAATAAATAACTAATTAAA
65 AATTAAATAATTTAATATTTTGAATTAAATATTTCAACTTAGGGTTTAATAAATAACTAATTAAA
*
26785648 TAATTAATTATATTAATATTTGTTATATTTTTAATAATTGAATATTTATTTAATATAATTAAATA
130 TAATTAATTATATTAATATTTATTATATTTTTAATAATTGAATATTTATTTAATATAATTAAATA
26785713 ATTTAATATTTTGAATTAAATATTTGAGTTTAAGGTTTAATAAATAAC
195 ATTTAATATTTTGAATTAAATATTTGAGTTTAAGGTTTAATAAATAAC
*
26785761 TAATTATATAATTAATTATTTTAATATTT
1 TAATTAAATAATTAATTATTTTAATATTT
26785790 CATAACTCTT
Statistics
Matches: 256, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
242 54 0.21
243 202 0.79
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.51
Consensus pattern (242 bp):
TAATTAAATAATTAATTATTTTAATATTTGTTCTATTTTTAATAATTGAATATTTATTTAATATA
ATTAAATAATTTAATATTTTGAATTAAATATTTCAACTTAGGGTTTAATAAATAACTAATTAAAT
AATTAATTATATTAATATTTATTATATTTTTAATAATTGAATATTTATTTAATATAATTAAATAA
TTTAATATTTTGAATTAAATATTTGAGTTTAAGGTTTAATAAATAAC
Found at i:26787349 original size:43 final size:43
Alignment explanation
Indices: 26787285--26787412 Score: 141
Period size: 43 Copynumber: 3.0 Consensus size: 43
26787275 TAAAATATGG
* * *
26787285 TCTTTAAAGGCACTTTTCCCACAAACGCCACTAAAGAACATGA
1 TCTTTAAAGGCGCTTTCCCCACAAACGCCGCTAAAGAACATGA
* * * *
26787328 TCTTTAACGGCGCTTTCCCCACAAACACCGCTAACGAACATAA
1 TCTTTAAAGGCGCTTTCCCCACAAACGCCGCTAAAGAACATGA
* * * *
26787371 TCTTTAATGACGC-TTCTACCACAAACGCCGCTAAAAAACATG
1 TCTTTAAAGGCGCTTTC-CCCACAAACGCCGCTAAAGAACATG
26787413 GTTTGTAGCG
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
42 3 0.04
43 67 0.96
ACGTcount: A:0.35, C:0.30, G:0.12, T:0.23
Consensus pattern (43 bp):
TCTTTAAAGGCGCTTTCCCCACAAACGCCGCTAAAGAACATGA
Found at i:26788437 original size:17 final size:19
Alignment explanation
Indices: 26788410--26788444 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26788400 CCTACATTAC
26788410 AGTAGGAAAAT-ATTAATT
1 AGTAGGAAAATAATTAATT
26788428 AGTA-GAAAATAATTAAT
1 AGTAGGAAAATAATTAAT
26788445 ATTTGACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.14, T:0.31
Consensus pattern (19 bp):
AGTAGGAAAATAATTAATT
Found at i:26793642 original size:114 final size:118
Alignment explanation
Indices: 26793513--26793778 Score: 380
Period size: 114 Copynumber: 2.3 Consensus size: 118
26793503 ATAGTTGCAA
* * * *
26793513 ATAATTAAATAATTAAATACTTTGAATTAAATATTTGGGTTTAGGGTTTAATAAATAACTAATTA
1 ATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTTAAGGTCTAATAAATAACTAATAA
26793578 AATAATTAA-A-TGT-TTG-GGTTGTTTTTAATAATTTAATATTTATTTAAAT
66 AATAATTAATATTGTATTGAGGTTGTTTTTAATAATTTAATATTTATTTAAAT
* * *
26793627 ATTATTAAATGATTAAATATTTTTAATTAAATATTTGGGTTTAAGGTCTAATAAATAACTAATAA
1 ATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTTAAGGTCTAATAAATAACTAATAA
* **
26793692 AATAATTAATTATTTTAATTGAATTTTGTTTTTAATAATTTAATATTTATTTAAAT
66 AATAATTAA-TATTGT-ATTG-AGGTTGTTTTTAATAATTTAATATTTATTTAAAT
26793748 ATAATTAAATAATT-AATATTTTGAATTAAAT
1 ATAATTAAATAATTAAATATTTTGAATTAAAT
26793779 CTTGATGGGA
Statistics
Matches: 132, Mismatches: 13, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
114 67 0.51
116 1 0.01
117 2 0.02
119 3 0.02
120 16 0.12
121 43 0.33
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.48
Consensus pattern (118 bp):
ATAATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTTAAGGTCTAATAAATAACTAATAA
AATAATTAATATTGTATTGAGGTTGTTTTTAATAATTTAATATTTATTTAAAT
Found at i:26794156 original size:82 final size:82
Alignment explanation
Indices: 26794056--26794222 Score: 307
Period size: 82 Copynumber: 2.0 Consensus size: 82
26794046 GGATTGGGGC
26794056 AATTTGTTTTATTCTAAGGAACCACTTTCAAACAATCAAGAGAAAAGACAATTGCATAAAAAATG
1 AATTTGTTTTATTCTAAGGAACCACTTTCAAACAATCAAGAGAAAAGACAATTGCATAAAAAATG
26794121 TTATCTGGATTCGAGTG
66 TTATCTGGATTCGAGTG
* *
26794138 AATTTGTTTTATTCTAAGGAACTACTTTCAAACAATCAAGAGAGAAGACAATTGCATAAAAAATG
1 AATTTGTTTTATTCTAAGGAACCACTTTCAAACAATCAAGAGAAAAGACAATTGCATAAAAAATG
*
26794203 TTATCTGGATTCGGGTG
66 TTATCTGGATTCGAGTG
26794220 AAT
1 AAT
26794223 GTCAAATACG
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.31
Consensus pattern (82 bp):
AATTTGTTTTATTCTAAGGAACCACTTTCAAACAATCAAGAGAAAAGACAATTGCATAAAAAATG
TTATCTGGATTCGAGTG
Found at i:26795189 original size:14 final size:14
Alignment explanation
Indices: 26795165--26795202 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
26795155 ATTTCCACAC
26795165 CAACC-ATACCAGT
1 CAACCAATACCAGT
26795178 CAACCAATACCAGT
1 CAACCAATACCAGT
*
26795192 AAACCGAATAC
1 CAACC-AATAC
26795203 AAAGAGTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 5 0.23
14 12 0.55
15 5 0.23
ACGTcount: A:0.45, C:0.34, G:0.08, T:0.13
Consensus pattern (14 bp):
CAACCAATACCAGT
Found at i:26797386 original size:40 final size:40
Alignment explanation
Indices: 26797341--26797426 Score: 129
Period size: 40 Copynumber: 2.1 Consensus size: 40
26797331 ATGCTACGAT
*
26797341 CTTTTGCGCCGTTTAT-GAATAAATACCGCTATTGCTTTAC
1 CTTTTGCGCCGTTTATAGAA-AAACACCGCTATTGCTTTAC
* *
26797381 CTTTTGCGGCGTTTATAGAAAAACGCCGCTATTGCTTTAC
1 CTTTTGCGCCGTTTATAGAAAAACACCGCTATTGCTTTAC
26797421 CTTTTG
1 CTTTTG
26797427 TGGCGTTTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
40 39 0.93
41 3 0.07
ACGTcount: A:0.21, C:0.22, G:0.17, T:0.40
Consensus pattern (40 bp):
CTTTTGCGCCGTTTATAGAAAAACACCGCTATTGCTTTAC
Found at i:26798439 original size:40 final size:39
Alignment explanation
Indices: 26798384--26798670 Score: 190
Period size: 40 Copynumber: 7.3 Consensus size: 39
26798374 CAACTCCGAG
* * * *
26798384 TCTTTTACCCTAATTAGAGGGCAGATTAAAGACCATCCAA
1 TCTTTTACCCCAACTAG-GGGCAGATTGAAGACAATCCAA
* * * *
26798424 TCTTTTACCCTAATTAGAGGGCAAATTGAAGACCATCCAA
1 TCTTTTACCCCAACTAG-GGGCAGATTGAAGACAATCCAA
* * * *
26798464 TATTTTACCCCGACCATGGGGTAGATTGAAG-CAATCCAA
1 TCTTTTACCCCAACTA-GGGGCAGATTGAAGACAATCCAA
* * * * * *
26798503 TCTTTTACCTCGACCATGGAGCAGATTGAAG-TAATCCAG
1 TCTTTTACCCCAACTA-GGGGCAGATTGAAGACAATCCAA
* * * * *
26798542 TCATTTACCCCCGACCATGGGGCAAATTAAAG-CAATCCAA
1 TCTTTTA-CCCCAACTA-GGGGCAGATTGAAGACAATCCAA
* *
26798582 TCTTTTACCCCAA-TCATGGGACGGATTGAAG-CAATCCAA
1 TCTTTTACCCCAACT-A-GGGGCAGATTGAAGACAATCCAA
* * *
26798621 TCTTTTACCCTAACTAGAGGGCAAATT-AATGACCATCCAA
1 TCTTTTACCCCAACTAG-GGGCAGATTGAA-GACAATCCAA
26798661 TCTTTTACCC
1 TCTTTTACCC
26798671 GTAAAGCTAT
Statistics
Matches: 205, Mismatches: 35, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
38 3 0.01
39 91 0.44
40 110 0.54
41 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (39 bp):
TCTTTTACCCCAACTAGGGGCAGATTGAAGACAATCCAA
Found at i:26798509 original size:79 final size:77
Alignment explanation
Indices: 26798402--26798671 Score: 194
Period size: 79 Copynumber: 3.4 Consensus size: 77
26798392 CCTAATTAGA
* * * *
26798402 GGGCAGATTAAAGACCATCCAATCTTTTACCCTA-ATTAGAGGGCAAATTGAAG-ACCATCCAAT
1 GGGCAAATTAAAG-CAATCCAATCTTTTACCCGACA-T-G-GAGCAAATTGAAGTA--ATCCAAT
26798465 -ATTTTA-CCCCGACCATG
60 CA-TTTACCCCCGACCATG
* * * * *
26798482 GGGTAGATTGAAGCAATCCAATCTTTTACCTCGACCATGGAGCAGATTGAAGTAATCCAGTCATT
1 GGGCAAATTAAAGCAATCCAATCTTTTACC-CGA-CATGGAGCAAATTGAAGTAATCCAATCATT
26798547 TACCCCCGACCATG
64 TACCCCCGACCATG
* ** * *
26798561 GGGCAAATTAAAGCAATCCAATCTTTTACCCCAATCATGG-GACGGATTGAAGCAATCCAATCTT
1 GGGCAAATTAAAGCAATCCAATCTTTTA-CCCGA-CATGGAG-CAAATTGAAGTAATCCAATCAT
** *
26798625 TTA-CCCTAACTA-G
63 TTACCCCCGACCATG
* *
26798638 AGGGCAAATTAATGACCATCCAATCTTTTACCCG
1 -GGGCAAATTAAAG-CAATCCAATCTTTTACCCG
26798672 TAAAGCTATA
Statistics
Matches: 158, Mismatches: 22, Indels: 22
0.78 0.11 0.11
Matches are distributed among these distances:
77 1 0.01
78 32 0.20
79 106 0.67
80 17 0.11
81 1 0.01
82 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (77 bp):
GGGCAAATTAAAGCAATCCAATCTTTTACCCGACATGGAGCAAATTGAAGTAATCCAATCATTTA
CCCCCGACCATG
Found at i:26798517 original size:39 final size:39
Alignment explanation
Indices: 26798402--26798630 Score: 226
Period size: 39 Copynumber: 5.8 Consensus size: 39
26798392 CCTAATTAGA
* * ** **
26798402 GGGCAGATTAAAGACCATCCAATCTTTTACCCTAATTA-G
1 GGGCAGATTGAAG-CAATCCAATCTTTTACCCCGACCATG
* * *
26798441 AGGGCAAATTGAAGACCATCCAATATTTTACCCCGACCATG
1 -GGGCAGATTGAAG-CAATCCAATCTTTTACCCCGACCATG
* *
26798482 GGGTAGATTGAAGCAATCCAATCTTTTACCTCGACCATG
1 GGGCAGATTGAAGCAATCCAATCTTTTACCCCGACCATG
* * * *
26798521 GAGCAGATTGAAGTAATCCAGTCATTTACCCCCGACCATG
1 GGGCAGATTGAAGCAATCCAATCTTTTA-CCCCGACCATG
* * * *
26798561 GGGCAAATTAAAGCAATCCAATCTTTTACCCCAATCATG
1 GGGCAGATTGAAGCAATCCAATCTTTTACCCCGACCATG
* *
26798600 GGACGGATTGAAGCAATCCAATCTTTTACCC
1 GGGCAGATTGAAGCAATCCAATCTTTTACCC
26798631 TAACTAGAGG
Statistics
Matches: 157, Mismatches: 30, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
39 82 0.52
40 74 0.47
41 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (39 bp):
GGGCAGATTGAAGCAATCCAATCTTTTACCCCGACCATG
Found at i:26799432 original size:63 final size:66
Alignment explanation
Indices: 26799292--26799463 Score: 260
Period size: 66 Copynumber: 2.6 Consensus size: 66
26799282 CTTATTTTTC
*
26799292 TTATTATTTATTTATTTATTGTATGAATATAAATAAATAAATATAAAATAATATTAATTTTATTT
1 TTATTATTTATTTA-TTATTGTATGAATATAAATAAATAAATATAAAATAATATTAATTTTATGT
26799357 TA
65 TA
* *
26799359 TTATTATTTATTTATTATTGTATTAATATAAATAAATAAATGTAAAATAATATTAA-TTT-TGTT
1 TTATTATTTATTTATTATTGTATGAATATAAATAAATAAATATAAAATAATATTAATTTTATGTT
26799422 -
66 A
* * *
26799422 TTGTTATTTATTTATTATTTTATGAATATAGATAAATAAATA
1 TTATTATTTATTTATTATTGTATGAATATAAATAAATAAATA
26799464 AATAACCCAA
Statistics
Matches: 97, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
63 37 0.38
64 3 0.03
65 3 0.03
66 40 0.41
67 14 0.14
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (66 bp):
TTATTATTTATTTATTATTGTATGAATATAAATAAATAAATATAAAATAATATTAATTTTATGTT
A
Found at i:26800620 original size:61 final size:60
Alignment explanation
Indices: 26800501--26800637 Score: 186
Period size: 61 Copynumber: 2.2 Consensus size: 60
26800491 CCTTAACTGT
* * * *
26800501 CAAACAATTCAAATTTGATACCCGAACTTTCCAAAAATCTAAGTTTTACCCTCGAATTTTC
1 CAAA-AATTCAAATTTGACACCCGAACTTTCCAAAAATCTAAGTTTGACCCCCAAATTTTC
* *
26800562 CAAAAATTCAAATTTGACCCCCTGAACTTTCCAAAAATTTGAA-TTTGACCCCCAAATTTTC
1 CAAAAATTCAAATTTGACACCC-GAACTTTCCAAAAATCT-AAGTTTGACCCCCAAATTTTC
26800623 CAAAAATTCAAATTT
1 CAAAAATTCAAATTT
26800638 AATCTGGTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
60 16 0.24
61 50 0.74
62 2 0.03
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (60 bp):
CAAAAATTCAAATTTGACACCCGAACTTTCCAAAAATCTAAGTTTGACCCCCAAATTTTC
Found at i:26800637 original size:30 final size:30
Alignment explanation
Indices: 26800484--26800637 Score: 150
Period size: 30 Copynumber: 5.1 Consensus size: 30
26800474 AAAATTATAT
** *
26800484 TTTGACCCCTTAACTGT-CAAACAATTCAAA
1 TTTGACCCCCGAACTTTCCAAA-AATTCAAA
** *
26800514 TTTGATACCCGAACTTTCCAAAAA-TCTAAG
1 TTTGACCCCCGAACTTTCCAAAAATTC-AAA
* * *
26800544 TTTTACCCTCGAATTTTCCAAAAATTCAAA
1 TTTGACCCCCGAACTTTCCAAAAATTCAAA
**
26800574 TTTGACCCCCTGAACTTTCCAAAAATTTGAA
1 TTTGACCCCC-GAACTTTCCAAAAATTCAAA
* *
26800605 TTTGACCCCCAAATTTTCCAAAAATTCAAA
1 TTTGACCCCCGAACTTTCCAAAAATTCAAA
26800635 TTT
1 TTT
26800638 AATCTGGTTT
Statistics
Matches: 99, Mismatches: 21, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
29 2 0.02
30 64 0.65
31 33 0.33
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (30 bp):
TTTGACCCCCGAACTTTCCAAAAATTCAAA
Found at i:26803751 original size:37 final size:37
Alignment explanation
Indices: 26803696--26803786 Score: 101
Period size: 37 Copynumber: 2.5 Consensus size: 37
26803686 TCATTTAAGT
* * * * *
26803696 AATTTGGGCTATATGCCTAGCAAGCTTTGTGTCGGTG
1 AATTAGGGCTATGTGCCTAGCAAGCTTCGTGCCGATG
* *
26803733 TATTAGGGCTATGTGCCTAGCAGGCTTCGTGCCGATG
1 AATTAGGGCTATGTGCCTAGCAAGCTTCGTGCCGATG
* *
26803770 AATTCGAGCTATGTGCC
1 AATTAGGGCTATGTGCC
26803787 GGTGAAATCA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.32
Consensus pattern (37 bp):
AATTAGGGCTATGTGCCTAGCAAGCTTCGTGCCGATG
Found at i:26803787 original size:21 final size:21
Alignment explanation
Indices: 26803753--26803809 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
26803743 ATGTGCCTAG
*
26803753 CAGGCT-TCGTGCCGATGAATT
1 CAGGCTAT-GTGCCGATGAAAT
*
26803774 C-GAGCTATGTGCCGGTGAAAT
1 CAG-GCTATGTGCCGATGAAAT
*
26803795 CAGGCTATGTTCCGA
1 CAGGCTATGTGCCGA
26803810 GTAGGCTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
20 1 0.03
21 26 0.90
22 2 0.07
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (21 bp):
CAGGCTATGTGCCGATGAAAT
Found at i:26814936 original size:33 final size:32
Alignment explanation
Indices: 26814863--26814925 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
26814853 TTATTCAAAG
*
26814863 TTGTTATTTTATTAATTTTATTTTGACTAAAT
1 TTGTTATTTTATTAATTATATTTTGACTAAAT
* *
26814895 TTGTTATTTTCTTAGTTATATTTTGACTAAA
1 TTGTTATTTTATTAATTATATTTTGACTAAA
26814926 ATTATTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.27, C:0.05, G:0.08, T:0.60
Consensus pattern (32 bp):
TTGTTATTTTATTAATTATATTTTGACTAAAT
Found at i:26815476 original size:223 final size:223
Alignment explanation
Indices: 26815088--26815508 Score: 770
Period size: 223 Copynumber: 1.9 Consensus size: 223
26815078 TTTTCTTCCA
*
26815088 ATTCGTCAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAAATTTGTCCAATTGCTATA
1 ATTCGTCAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAAATTTGTCCAATTACTATA
* * *
26815153 TTAACCCCTTCCCATTTTCATCTTTCATAATCACAAATAATTCACTACATTCATCCATCAAGCAT
66 TTAACCCCTTCCCATTTTCATCTTTCATAAACACAAACAATTCACCACATTCATCCATCAAGCAT
26815218 GATTAAAATCATGTGCCACTAAATTCTTTTCCATTTCAACAGTGCTCTCTCTGCCTTTTCCATTT
131 GATTAAAATCATGTGCCACTAAATTCTTTTCCATTTCAACAGTGCTCTCTCTGCCTTTTCCATTT
26815283 CATCATGTGCCACTAAACAATTCACCAC
196 CATCATGTGCCACTAAACAATTCACCAC
* *
26815311 ATTCGTCAGTGCTCTCTCTGTCTTTTCCATTTCATTCCTTTTCAAAACTTTGTCCAATTACTATA
1 ATTCGTCAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAAATTTGTCCAATTACTATA
*
26815376 TTAACCCCTTCCCATTTTCATTTTTCATAAACACAAACAATTCACCACATTCATCCATCAAGCAT
66 TTAACCCCTTCCCATTTTCATCTTTCATAAACACAAACAATTCACCACATTCATCCATCAAGCAT
*
26815441 GATTAAAATCATGTGCCAGTAAATTCTTTTCCATTTCAACAGTGCTCTCTCTGCCTTTTCCATTT
131 GATTAAAATCATGTGCCACTAAATTCTTTTCCATTTCAACAGTGCTCTCTCTGCCTTTTCCATTT
26815506 CAT
196 CAT
26815509 TCCTTTTCAA
Statistics
Matches: 190, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
223 190 1.00
ACGTcount: A:0.26, C:0.28, G:0.07, T:0.39
Consensus pattern (223 bp):
ATTCGTCAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAAATTTGTCCAATTACTATA
TTAACCCCTTCCCATTTTCATCTTTCATAAACACAAACAATTCACCACATTCATCCATCAAGCAT
GATTAAAATCATGTGCCACTAAATTCTTTTCCATTTCAACAGTGCTCTCTCTGCCTTTTCCATTT
CATCATGTGCCACTAAACAATTCACCAC
Found at i:26815587 original size:163 final size:163
Alignment explanation
Indices: 26815317--26815671 Score: 638
Period size: 163 Copynumber: 2.2 Consensus size: 163
26815307 CCACATTCGT
*
26815317 CAGTGCTCTCTCTGTCTTTTCCATTTCATTCCTTTTCAAAACTTTGTCCAATTACTATATTAACC
1 CAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAACTTTGTCCAATTACTATATTAACC
*
26815382 CCTTCCCATTTTCATTTTTCATAAACACAAACAATTCACCACATTCATCCATCAAGCATGATTAA
66 CCTTCCCATTTTCATCTTTCATAAACACAAACAATTCACCACATTCATCCATCAAGCATGATTAA
*
26815447 AATCATGTGCCAGTAAATTCTTTTCCATTTCAA
131 AATCATGTGCCACTAAATTCTTTTCCATTTCAA
* *
26815480 CAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAATTTTGTCCAATTGCTATATTAACC
1 CAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAACTTTGTCCAATTACTATATTAACC
* *
26815545 CCTTCCCATTTTCATCTTTCATAATCACAAACAATTCACCACATTCATCTATCAAGCATGATTAA
66 CCTTCCCATTTTCATCTTTCATAAACACAAACAATTCACCACATTCATCCATCAAGCATGATTAA
*
26815610 AATCATGTGCCACTAAATTCTTTTCCATTTCAT
131 AATCATGTGCCACTAAATTCTTTTCCATTTCAA
26815643 CAGTGCTCTCTCTGCCTTTTCCATTTCAT
1 CAGTGCTCTCTCTGCCTTTTCCATTTCAT
26815672 CATGTGCCAC
Statistics
Matches: 184, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
163 184 1.00
ACGTcount: A:0.26, C:0.28, G:0.06, T:0.40
Consensus pattern (163 bp):
CAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAACTTTGTCCAATTACTATATTAACC
CCTTCCCATTTTCATCTTTCATAAACACAAACAATTCACCACATTCATCCATCAAGCATGATTAA
AATCATGTGCCACTAAATTCTTTTCCATTTCAA
Found at i:26815661 original size:29 final size:29
Alignment explanation
Indices: 26815629--26815731 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 29
26815619 CCACTAAATT
26815629 CTTTTCCATTTCATCAGTGCTCTCTCTGC
1 CTTTTCCATTTCATCAGTGCTCTCTCTGC
* ***
26815658 CTTTTCCATTTCATCATGTGC-CACTAAAC
1 CTTTTCCATTTCATCA-GTGCTCTCTCTGC
* ** * *
26815687 AATTCACCACGTTCGTCAGTGCTCTCTCTGC
1 -CTTTTCCA-TTTCATCAGTGCTCTCTCTGC
26815718 CTTTTCCATTTCAT
1 CTTTTCCATTTCAT
26815732 TCCTTTTCAA
Statistics
Matches: 52, Mismatches: 18, Indels: 8
0.67 0.23 0.10
Matches are distributed among these distances:
29 24 0.46
30 18 0.35
31 10 0.19
ACGTcount: A:0.17, C:0.33, G:0.10, T:0.41
Consensus pattern (29 bp):
CTTTTCCATTTCATCAGTGCTCTCTCTGC
Found at i:26815807 original size:386 final size:386
Alignment explanation
Indices: 26815094--26815856 Score: 1409
Period size: 386 Copynumber: 2.0 Consensus size: 386
26815084 TCCAATTCGT
26815094 CAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAAATTTGTCCAATTGCTATATTAACC
1 CAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAAATTTGTCCAATTGCTATATTAACC
* *
26815159 CCTTCCCATTTTCATCTTTCATAATCACAAATAATTCACTACATTCATCCATCAAGCATGATTAA
66 CCTTCCCATTTTCATCTTTCATAATCACAAACAATTCACCACATTCATCCATCAAGCATGATTAA
26815224 AATCATGTGCCACTAAATTCTTTTCCATTTCAACAGTGCTCTCTCTGCCTTTTCCATTTCATCAT
131 AATCATGTGCCACTAAATTCTTTTCCATTTCAACAGTGCTCTCTCTGCCTTTTCCATTTCATCAT
*
26815289 GTGCCACTAAACAATTCACCACATTCGTCAGTGCTCTCTCTGTCTTTTCCATTTCATTCCTTTTC
196 GTGCCACTAAACAATTCACCACATTCGTCAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTC
* *
26815354 AAAACTTTGTCCAATTACTATATTAACCCCTTCCCATTTTCATTTTTCATAAACACAAACAATTC
261 AAAAATTTGTCCAATTACTATATTAACCCCTTCCCATTTTCATCTTTCATAAACACAAACAATTC
*
26815419 ACCACATTCATCCATCAAGCATGATTAAAATCATGTGCCAGTAAATTCTTTTCCATTTCAA
326 ACCACATTCATCCATCAAGCATGATTAAAATCATGTGCCACTAAATTCTTTTCCATTTCAA
*
26815480 CAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAATTTTGTCCAATTGCTATATTAACC
1 CAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAAATTTGTCCAATTGCTATATTAACC
*
26815545 CCTTCCCATTTTCATCTTTCATAATCACAAACAATTCACCACATTCATCTATCAAGCATGATTAA
66 CCTTCCCATTTTCATCTTTCATAATCACAAACAATTCACCACATTCATCCATCAAGCATGATTAA
*
26815610 AATCATGTGCCACTAAATTCTTTTCCATTTCATCAGTGCTCTCTCTGCCTTTTCCATTTCATCAT
131 AATCATGTGCCACTAAATTCTTTTCCATTTCAACAGTGCTCTCTCTGCCTTTTCCATTTCATCAT
*
26815675 GTGCCACTAAACAATTCACCACGTTCGTCAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTC
196 GTGCCACTAAACAATTCACCACATTCGTCAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTC
* *
26815740 AAAAATTTGTCCAATTGCTATATTAACCCCTTCCCATTTTCATCTTTCATAATCACAAACAATTC
261 AAAAATTTGTCCAATTACTATATTAACCCCTTCCCATTTTCATCTTTCATAAACACAAACAATTC
*
26815805 ACCACATTCTTCCATCAAGCATGATTAAAATCATGTGCCACTAAATTCTTTT
326 ACCACATTCATCCATCAAGCATGATTAAAATCATGTGCCACTAAATTCTTTT
26815857 TAGCCCTATT
Statistics
Matches: 364, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
386 364 1.00
ACGTcount: A:0.27, C:0.28, G:0.06, T:0.39
Consensus pattern (386 bp):
CAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTCAAAAATTTGTCCAATTGCTATATTAACC
CCTTCCCATTTTCATCTTTCATAATCACAAACAATTCACCACATTCATCCATCAAGCATGATTAA
AATCATGTGCCACTAAATTCTTTTCCATTTCAACAGTGCTCTCTCTGCCTTTTCCATTTCATCAT
GTGCCACTAAACAATTCACCACATTCGTCAGTGCTCTCTCTGCCTTTTCCATTTCATTCCTTTTC
AAAAATTTGTCCAATTACTATATTAACCCCTTCCCATTTTCATCTTTCATAAACACAAACAATTC
ACCACATTCATCCATCAAGCATGATTAAAATCATGTGCCACTAAATTCTTTTCCATTTCAA
Found at i:26822221 original size:13 final size:13
Alignment explanation
Indices: 26822203--26822229 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26822193 GGGATTTTGA
26822203 TAAGCAAATTATT
1 TAAGCAAATTATT
26822216 TAAGCAAATTATT
1 TAAGCAAATTATT
26822229 T
1 T
26822230 GTGTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (13 bp):
TAAGCAAATTATT
Found at i:26822518 original size:33 final size:32
Alignment explanation
Indices: 26822445--26822507 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
26822435 TTATTCAAAG
* *
26822445 TTGTAATTTTATTAATTTTGTTTTGACTAAAT
1 TTGTTATTTTATTAATTTTATTTTGACTAAAT
*
26822477 TTGTTATTTTCTTAATTTTATTTTGACTAAA
1 TTGTTATTTTATTAATTTTATTTTGACTAAA
26822508 ATTATTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.27, C:0.05, G:0.08, T:0.60
Consensus pattern (32 bp):
TTGTTATTTTATTAATTTTATTTTGACTAAAT
Found at i:26829946 original size:7 final size:7
Alignment explanation
Indices: 26829934--26829967 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
26829924 TATGGAAAGC
26829934 TAGGGTT
1 TAGGGTT
26829941 TAGGGTT
1 TAGGGTT
*
26829948 TAAGGTT
1 TAGGGTT
26829955 TAGGGTT
1 TAGGGTT
26829962 TAGGGT
1 TAGGGT
26829968 AACAGGTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (7 bp):
TAGGGTT
Found at i:26833034 original size:3 final size:3
Alignment explanation
Indices: 26833026--26833081 Score: 64
Period size: 3 Copynumber: 18.7 Consensus size: 3
26833016 TGAGGCAGAG
26833026 GAA GAA GAA GGAA -AA GAA GAA GAA GAA GAA GAA G-A GAA TGAA GAA
1 GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -GAA GAA
26833071 -ATA GAA GAA GA
1 GA-A GAA GAA GA
26833082 TGTTACTCGA
Statistics
Matches: 47, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
2 5 0.11
3 35 0.74
4 7 0.15
ACGTcount: A:0.64, C:0.00, G:0.32, T:0.04
Consensus pattern (3 bp):
GAA
Found at i:26833058 original size:24 final size:24
Alignment explanation
Indices: 26833026--26833081 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
26833016 TGAGGCAGAG
26833026 GAAGAAGAAG-GAAAAGAAGAAGA-A
1 GAAGAAGAAGAG-AAAGAAGAA-ATA
*
26833050 GAAGAAGAAGAGAATGAAGAAATA
1 GAAGAAGAAGAGAAAGAAGAAATA
26833074 GAAGAAGA
1 GAAGAAGA
26833082 TGTTACTCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 1 0.03
24 27 0.93
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.32, T:0.04
Consensus pattern (24 bp):
GAAGAAGAAGAGAAAGAAGAAATA
Found at i:26850696 original size:30 final size:30
Alignment explanation
Indices: 26850662--26850783 Score: 142
Period size: 30 Copynumber: 4.1 Consensus size: 30
26850652 AAACCAGGTT
26850662 AAATTTGAATTTTTGGAAAGTTTAG-GGGTC
1 AAATTTGAATTTTTGGAAAG-TTAGAGGGTC
* * *
26850692 AAATTTGAATTTTTGGAAAATTTGAGGGTA
1 AAATTTGAATTTTTGGAAAGTTAGAGGGTC
* *
26850722 AAAATT-AGATTTTTGGAAAGTTCGAGGGTC
1 AAATTTGA-ATTTTTGGAAAGTTAGAGGGTC
* *
26850752 AAATTTGAATTTTTAGATAGTTAGA-GGTC
1 AAATTTGAATTTTTGGAAAGTTAGAGGGTC
26850781 AAA
1 AAA
26850784 ACACAATTTT
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
29 11 0.14
30 66 0.85
31 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (30 bp):
AAATTTGAATTTTTGGAAAGTTAGAGGGTC
Found at i:26854461 original size:21 final size:21
Alignment explanation
Indices: 26854412--26854463 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
26854402 GGAGTTTTTA
*
26854412 GTATCAGTAGAAGCATGACAT
1 GTATCGGTAGAAGCATGACAT
*
26854433 GT-TCCGGTAGAAGTCAT-ACTT
1 GTAT-CGGTAGAAG-CATGACAT
26854454 GTATCGGTAG
1 GTATCGGTAG
26854464 TATTATCTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 1 0.04
21 21 0.81
22 4 0.15
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (21 bp):
GTATCGGTAGAAGCATGACAT
Found at i:26855020 original size:13 final size:13
Alignment explanation
Indices: 26855004--26855033 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26854994 TGGGCTTGTA
26855004 ATTTGAGTTTATT
1 ATTTGAGTTTATT
*
26855017 ATTTGGGTTTATT
1 ATTTGAGTTTATT
26855030 ATTT
1 ATTT
26855034 ATTTATCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.17, T:0.63
Consensus pattern (13 bp):
ATTTGAGTTTATT
Found at i:26855159 original size:58 final size:55
Alignment explanation
Indices: 26855059--26855190 Score: 160
Period size: 58 Copynumber: 2.3 Consensus size: 55
26855049 TAAAATAATA
* *
26855059 AATAAATAAATAACA-AAACAAAATTAATATTATTTTACATTTATTTACTTATATTCATAC
1 AATAAATAAATAA-ATAAA-TAAGTTAATATTATTTTACATTTA--T--TTATATTCATAC
* *
26855119 AAT-AATAAATAAATAAATAAGTTAATATTATTTTATATTTATTTATATTCATAT
1 AATAAATAAATAAATAAATAAGTTAATATTATTTTACATTTATTTATATTCATAC
26855173 AATAAATAAATAAATAAA
1 AATAAATAAATAAATAAA
26855191 AGAAAATAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
54 14 0.21
55 14 0.21
56 1 0.02
58 22 0.33
59 12 0.18
60 3 0.05
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (55 bp):
AATAAATAAATAAATAAATAAGTTAATATTATTTTACATTTATTTATATTCATAC
Found at i:26863142 original size:20 final size:20
Alignment explanation
Indices: 26863117--26863211 Score: 76
Period size: 20 Copynumber: 4.9 Consensus size: 20
26863107 TAAGTCTTAT
26863117 AAATTTTATATATATTTTTA
1 AAATTTTATATATATTTTTA
*
26863137 AAATTTTCTATAT-TTTTAATA
1 AAATTTTATATATATTTT--TA
*
26863158 AAATTTTA-ATAT-TTTATA
1 AAATTTTATATATATTTTTA
* *
26863176 ATAGTTTT-TATATATTATTA
1 A-AATTTTATATATATTTTTA
*
26863196 AATTTTTA-ATA-ATTTT
1 AAATTTTATATATATTTT
26863212 CTAATTTTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
18 7 0.11
19 21 0.34
20 24 0.39
21 9 0.15
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (20 bp):
AAATTTTATATATATTTTTA
Found at i:26863152 original size:29 final size:29
Alignment explanation
Indices: 26863113--26863220 Score: 91
Period size: 29 Copynumber: 3.8 Consensus size: 29
26863103 AGATTAAGTC
26863113 TTATAA-ATTTTATATATATTTTTAAAATT
1 TTATAATATTTT-TATATATTTTTAAAATT
* * * *
26863142 TTCT-ATATTTTTAATAAAATTTTAATATT
1 TTATAATATTTTT-ATATATTTTTAAAATT
*
26863171 TTATAATAGTTTTTATATATTATT-AAATT
1 TTATAATA-TTTTTATATATTTTTAAAATT
* *
26863200 TT-TAATAATTTTCTA-ATTTTT
1 TTATAATATTTTTATATATTTTT
26863221 TTCTACATTT
Statistics
Matches: 63, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
26 5 0.08
27 6 0.10
28 7 0.11
29 30 0.48
30 10 0.16
31 5 0.08
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (29 bp):
TTATAATATTTTTATATATTTTTAAAATT
Found at i:26863172 original size:19 final size:18
Alignment explanation
Indices: 26863113--26863211 Score: 65
Period size: 19 Copynumber: 5.1 Consensus size: 18
26863103 AGATTAAGTC
26863113 TTAT-AAATTTTATATATAT
1 TTATAAAATTTTA-ATAT-T
* *
26863132 TTTTAAAATTTTCTATATTT
1 TTATAAAATTTT-AATA-TT
26863152 TTAATAAAATTTTAATATT
1 TT-ATAAAATTTTAATATT
* * *
26863171 TTATAATAGTTTTTATATA
1 TTATAA-AATTTTAATATT
*
26863190 TTATTAAATTTTTAATAATT
1 TTA-TAAAATTTTAAT-ATT
26863210 TT
1 TT
26863212 CTAATTTTTT
Statistics
Matches: 63, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
18 4 0.06
19 26 0.41
20 23 0.37
21 10 0.16
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (18 bp):
TTATAAAATTTTAATATT
Found at i:26864791 original size:25 final size:23
Alignment explanation
Indices: 26864750--26864795 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
26864740 CCAATTAGGG
26864750 AATTATTATTTAGATTTAATTCA
1 AATTATTATTTAGATTTAATTCA
*
26864773 AATTATCTTTTTAGAATTTAATT
1 AATTAT-TATTTAG-ATTTAATT
26864796 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (23 bp):
AATTATTATTTAGATTTAATTCA
Found at i:26871758 original size:50 final size:50
Alignment explanation
Indices: 26871694--26872018 Score: 403
Period size: 50 Copynumber: 6.6 Consensus size: 50
26871684 GTCGAAATAA
* * * * * *
26871694 GTAAACGTATATATAAGTTGACGAGCGTAAACATCTACAAGATGGCGAGC
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGTTGGCGAGC
* * * * *
26871744 TTAAATGCATATAT-AGTTGACGAGCATAAATGTGTGCAAGTTGGCGAGC
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGTTGGCGAGC
*
26871793 GTAAACGCATATATAAGCTGGCGAGCGTAAACGTGTGCAAGTTGGCGAGC
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGTTGGCGAGC
* * *
26871843 GTAAATGC--ATATAAGCTGACAAGCGTAAACGTGTGCAAGTTGACGAGC
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGTTGGCGAGC
* *
26871891 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGTGAGC
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGTTGGCGAGC
* * *
26871941 GTAAACGCATATAT-GGCTGACGAGCGTAAACGTGTGCAAGCTGACGAGC
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGTTGGCGAGC
*
26871990 GTAAACG--TATGA-AAGCTGGCGAGCGTAAA
1 GTAAACGCATAT-ATAAGCTGACGAGCGTAAA
26872019 AACACAATGA
Statistics
Matches: 241, Mismatches: 29, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
47 3 0.01
48 59 0.24
49 80 0.33
50 99 0.41
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.21
Consensus pattern (50 bp):
GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGTTGGCGAGC
Found at i:26871791 original size:24 final size:24
Alignment explanation
Indices: 26871758--26872018 Score: 162
Period size: 24 Copynumber: 10.7 Consensus size: 24
26871748 ATGCATATAT
* * *
26871758 AGTTGACGAGCATAAATGTGTGCA
1 AGTTGGCGAGCGTAAACGTGTGCA
* **
26871782 AGTTGGCGAGCGTAAACGCATATATA
1 AGTTGGCGAGCGTAAACG--TGTGCA
*
26871808 AGCTGGCGAGCGTAAACGTGTGCA
1 AGTTGGCGAGCGTAAACGTGTGCA
* ** **
26871832 AGTTGGCGAGCGTAAATGCATATA
1 AGTTGGCGAGCGTAAACGTGTGCA
* * *
26871856 AGCTGACAAGCGTAAACGTGTGCA
1 AGTTGGCGAGCGTAAACGTGTGCA
* * **
26871880 AGTTGACGAGCGTAAACGCATATATA
1 AGTTGGCGAGCGTAAACG--TGTGCA
* *
26871906 AGCTGACGAGCGTAAACGTGTGCA
1 AGTTGGCGAGCGTAAACGTGTGCA
* * ** **
26871930 AGCTGGTGAGCGTAAACGCATATA
1 AGTTGGCGAGCGTAAACGTGTGCA
* * *
26871954 TGGCTGACGAGCGTAAACGTGTGCA
1 -AGTTGGCGAGCGTAAACGTGTGCA
* * * *
26871979 AGCTGACGAGCGTAAACGTATGAA
1 AGTTGGCGAGCGTAAACGTGTGCA
*
26872003 AGCTGGCGAGCGTAAA
1 AGTTGGCGAGCGTAAA
26872019 AACACAATGA
Statistics
Matches: 182, Mismatches: 50, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
24 125 0.69
25 17 0.09
26 40 0.22
ACGTcount: A:0.32, C:0.17, G:0.31, T:0.20
Consensus pattern (24 bp):
AGTTGGCGAGCGTAAACGTGTGCA
Found at i:26871823 original size:99 final size:99
Alignment explanation
Indices: 26871694--26872018 Score: 442
Period size: 99 Copynumber: 3.3 Consensus size: 99
26871684 GTCGAAATAA
* * * * * *
26871694 GTAAACGTATATATAAGTTGACGAGCGTAAACATCTACAAGATGGCGAGCTTAAATGCATATATA
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGATGGCGAGCGTAAATGCATATATA
* * * *
26871759 GTTGACGAGCATAAATGTGTGCAAGTTGGCGAGC
66 GCTGACGAGCGTAAACGTGTGCAAGTTGACGAGC
* *
26871793 GTAAACGCATATATAAGCTGGCGAGCGTAAACGTGTGCAAGTTGGCGAGCGTAAATGCATATA-A
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGATGGCGAGCGTAAATGCATATATA
*
26871857 GCTGACAAGCGTAAACGTGTGCAAGTTGACGAGC
66 GCTGACGAGCGTAAACGTGTGCAAGTTGACGAGC
* * * *
26871891 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGTGAGCGTAAACGCATATATG
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGATGGCGAGCGTAAATGCATATATA
*
26871956 GCTGACGAGCGTAAACGTGTGCAAGCTGACGAGC
66 GCTGACGAGCGTAAACGTGTGCAAGTTGACGAGC
*
26871990 GTAAACG--TATGA-AAGCTGGCGAGCGTAAA
1 GTAAACGCATAT-ATAAGCTGACGAGCGTAAA
26872019 AACACAATGA
Statistics
Matches: 203, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
97 19 0.09
98 90 0.44
99 94 0.46
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.21
Consensus pattern (99 bp):
GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGATGGCGAGCGTAAATGCATATATA
GCTGACGAGCGTAAACGTGTGCAAGTTGACGAGC
Found at i:26872672 original size:71 final size:71
Alignment explanation
Indices: 26872584--26872728 Score: 263
Period size: 71 Copynumber: 2.0 Consensus size: 71
26872574 CATGTATCGA
*
26872584 TAGAAGTTGTAGGGCAAATCTACCTTGCTCTTTGGAAATTATTGTATCGGTAACTGTATGGGTTA
1 TAGAAGTTGTAGGGCAAATCTACCTTGCTCTTTGGAAATTATTGTATCGGTAACTGTATGAGTTA
26872649 TGTCGG
66 TGTCGG
* *
26872655 TAGAAGTTGTAGGGCAAATCTACCTTGCTCTTTGGAACTTATTGTATCGGTAGCTGTATGAGTTA
1 TAGAAGTTGTAGGGCAAATCTACCTTGCTCTTTGGAAATTATTGTATCGGTAACTGTATGAGTTA
26872720 TGTCGG
66 TGTCGG
26872726 TAG
1 TAG
26872729 TACCCATGCT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (71 bp):
TAGAAGTTGTAGGGCAAATCTACCTTGCTCTTTGGAAATTATTGTATCGGTAACTGTATGAGTTA
TGTCGG
Found at i:26878958 original size:50 final size:50
Alignment explanation
Indices: 26878895--26879149 Score: 311
Period size: 50 Copynumber: 5.1 Consensus size: 50
26878885 GTCAAAATAA
* * *
26878895 GTAAACGTATATATAAGCTAACGAGCGTAAACGTGTGCAAGCTAGCGAGC
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGCGAGC
* * * * * *
26878945 GTAAATGCATATATTAGCTAATGAGCAG-AAACTTGTGCAAGTTGGCGAGC
1 GTAAACGCATATATAAGCTGACGAGC-GTAAACGTGTGCAAGCTGGCGAGC
* *
26878995 GTAAACACATATATAA-CTTGACGAGCATAAACGTGTGCAAGCTGGCGAGC
1 GTAAACGCATATATAAGC-TGACGAGCGTAAACGTGTGCAAGCTGGCGAGC
* * *
26879045 GTAAATGC--ATATAAGATGACGAGCGTAAACGTGTGCAAGTTGGCGAGC
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGCGAGC
* * *
26879093 GTAAACGCATATATAAGCTGACGAGCATAAACGTGTGCATGCTGACGAGC
1 GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGCGAGC
26879143 GTAAACG
1 GTAAACG
26879150 TATGAAAGCT
Statistics
Matches: 173, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
48 43 0.25
49 1 0.01
50 128 0.74
51 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (50 bp):
GTAAACGCATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGCGAGC
Found at i:26879000 original size:24 final size:24
Alignment explanation
Indices: 26878973--26879171 Score: 101
Period size: 24 Copynumber: 8.1 Consensus size: 24
26878963 TAATGAGCAG
*
26878973 AAACTTGTGCAAGTTGGCGAGCGT
1 AAACGTGTGCAAGTTGGCGAGCGT
* * ** * * *
26878997 AAACACATATATAACTTGACGAGCAT
1 -AA-ACGTGTGCAAGTTGGCGAGCGT
*
26879023 AAACGTGTGCAAGCTGGCGAGCGT
1 AAACGTGTGCAAGTTGGCGAGCGT
* ** ** * *
26879047 AAATGCATATAAGATGACGAGCGT
1 AAACGTGTGCAAGTTGGCGAGCGT
26879071 AAACGTGTGCAAGTTGGCGAGCGT
1 AAACGTGTGCAAGTTGGCGAGCGT
* ** * * *
26879095 AAACGCATATATAAGCTGACGAGCAT
1 AAACG--TGTGCAAGTTGGCGAGCGT
* * *
26879121 AAACGTGTGCATGCTGACGAGCGT
1 AAACGTGTGCAAGTTGGCGAGCGT
* * * *
26879145 AAACGTATGAAAGCTGGCAAGCGT
1 AAACGTGTGCAAGTTGGCGAGCGT
26879169 AAA
1 AAA
26879172 ATGCAATGAA
Statistics
Matches: 126, Mismatches: 45, Indels: 7
0.71 0.25 0.04
Matches are distributed among these distances:
24 89 0.71
25 4 0.03
26 33 0.26
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.20
Consensus pattern (24 bp):
AAACGTGTGCAAGTTGGCGAGCGT
Found at i:26879120 original size:98 final size:99
Alignment explanation
Indices: 26878895--26879147 Score: 359
Period size: 98 Copynumber: 2.6 Consensus size: 99
26878885 GTCAAAATAA
* * * *
26878895 GTAAACGTATATATAAGCTAACGAGCGTAAACGTGTGCAAGCTAGCGAGCGTAAATGCATATATT
1 GTAAACGCATATATAAGCTGACGAGCATAAACGTGTGCAAGCTGGCGAGCGTAAATGCATATA-T
* * *
26878960 AGCTAATGAGCAGAAACTTGTGCAAGTTGGCGAGC
65 AGATAACGAGCAGAAACGTGTGCAAGTTGGCGAGC
*
26878995 GTAAACACATATATAA-CTTGACGAGCATAAACGTGTGCAAGCTGGCGAGCGTAAATGCATATA-
1 GTAAACGCATATATAAGC-TGACGAGCATAAACGTGTGCAAGCTGGCGAGCGTAAATGCATATAT
*
26879058 AGATGACGAGC-GTAAACGTGTGCAAGTTGGCGAGC
65 AGATAACGAGCAG-AAACGTGTGCAAGTTGGCGAGC
* *
26879093 GTAAACGCATATATAAGCTGACGAGCATAAACGTGTGCATGCTGACGAGCGTAAA
1 GTAAACGCATATATAAGCTGACGAGCATAAACGTGTGCAAGCTGGCGAGCGTAAA
26879148 CGTATGAAAG
Statistics
Matches: 138, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
97 1 0.01
98 79 0.57
99 2 0.01
100 56 0.41
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.21
Consensus pattern (99 bp):
GTAAACGCATATATAAGCTGACGAGCATAAACGTGTGCAAGCTGGCGAGCGTAAATGCATATATA
GATAACGAGCAGAAACGTGTGCAAGTTGGCGAGC
Found at i:26880582 original size:17 final size:17
Alignment explanation
Indices: 26880540--26880586 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
26880530 AAATTTTTTA
*
26880540 TATAGTTATATTAACAT
1 TATAGTAATATTAACAT
** *
26880557 TATTTTAATATTTACAT
1 TATAGTAATATTAACAT
26880574 TATAGTAATATTA
1 TATAGTAATATTA
26880587 TATTTAGTAT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (17 bp):
TATAGTAATATTAACAT
Found at i:26894630 original size:11 final size:12
Alignment explanation
Indices: 26894586--26894655 Score: 58
Period size: 11 Copynumber: 5.9 Consensus size: 12
26894576 GTCTTTCATT
26894586 TTTCTTTCTC-A
1 TTTCTTTCTCTA
*
26894597 TTTTTTTTCTCTTA
1 -TTTCTTTCTC-TA
* *
26894611 TTCCATTCT-TA
1 TTTCTTTCTCTA
26894622 TTTCTTTCTCT-
1 TTTCTTTCTCTA
26894633 TTTCTTT-TCTA
1 TTTCTTTCTCTA
26894644 TTCTCTTTCTCT
1 TT-TCTTTCTCT
26894656 TTTAATCACT
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
10 3 0.07
11 18 0.39
12 15 0.33
13 9 0.20
14 1 0.02
ACGTcount: A:0.07, C:0.24, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTCTTTCTCTA
Found at i:26895182 original size:7 final size:7
Alignment explanation
Indices: 26895172--26895221 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
26895162 ACCGTTGACC
26895172 GACCGTT
1 GACCGTT
26895179 GACCGTT
1 GACCGTT
*
26895186 GA-CTTT
1 GACCGTT
26895192 GACCGTT
1 GACCGTT
26895199 GACCGTT
1 GACCGTT
**
26895206 GA-TTTT
1 GACCGTT
26895212 GACCGTT
1 GACCGTT
26895219 GAC
1 GAC
26895222 TTTTTGAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 9 0.26
7 26 0.74
ACGTcount: A:0.16, C:0.24, G:0.26, T:0.34
Consensus pattern (7 bp):
GACCGTT
Found at i:26895195 original size:13 final size:13
Alignment explanation
Indices: 26895177--26895201 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26895167 TGACCGACCG
26895177 TTGACCGTTGACT
1 TTGACCGTTGACT
26895190 TTGACCGTTGAC
1 TTGACCGTTGAC
26895202 CGTTGATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (13 bp):
TTGACCGTTGACT
Found at i:26895197 original size:20 final size:20
Alignment explanation
Indices: 26895172--26895221 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
26895162 ACCGTTGACC
26895172 GACCGTTGACCGTTGACTTT
1 GACCGTTGACCGTTGACTTT
*
26895192 GACCGTTGACCGTTGATTTT
1 GACCGTTGACCGTTGACTTT
26895212 GACCGTTGAC
1 GACCGTTGAC
26895222 TTTTTGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.16, C:0.24, G:0.26, T:0.34
Consensus pattern (20 bp):
GACCGTTGACCGTTGACTTT
Found at i:26895213 original size:13 final size:14
Alignment explanation
Indices: 26895197--26895225 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26895187 ACTTTGACCG
26895197 TTGACCGTTGA-TT
1 TTGACCGTTGACTT
26895210 TTGACCGTTGACTT
1 TTGACCGTTGACTT
26895224 TT
1 TT
26895226 TGAAAAACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.14, C:0.17, G:0.21, T:0.48
Consensus pattern (14 bp):
TTGACCGTTGACTT
Found at i:26897128 original size:18 final size:17
Alignment explanation
Indices: 26897105--26897141 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
26897095 TAAACGAACA
26897105 TAAAAAATAAAATAAAAC
1 TAAAAAAT-AAATAAAAC
*
26897123 TAAAAACTAAATAAAAC
1 TAAAAAATAAATAAAAC
26897140 TA
1 TA
26897142 TCTATGTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.19
Consensus pattern (17 bp):
TAAAAAATAAATAAAAC
Found at i:26900372 original size:202 final size:202
Alignment explanation
Indices: 26900026--26900631 Score: 1113
Period size: 202 Copynumber: 3.0 Consensus size: 202
26900016 TAGTGAAATT
*
26900026 CTCAAGTATACAACAAGAACATAACCAATGGACTTTTCATTCGTAAGTTATCTCTTTTCGTTGAA
1 CTCAAGTATACAACAAGAACATAACCAATGGACTTTTCATTCGTAAGTTGTCTCTTTTCGTTGAA
* *
26900091 GGGTTATATTGAGAACTCTTATTGTTCTCTTAGTTATCTCTATGTTTCCACTTCTAATGACAAGA
66 GGGTTATATTGAGAACTCTTATTGTTCTCTTAGTTATCTCTATGTTTCCACTTCTAATGGCGAGA
*
26900156 ATAATTATTACTAATAAGATATTCAATAATCAAGTAATGTGGCACAATCTACAAAAAATATGCAC
131 ATAATTATTACTAATAAGATATCCAATAATCAAGTAATGTGGCACAATCTACAAAAAATATGCAC
26900221 TTCATAC
196 TTCATAC
* *
26900228 CTCAAGTATACAACAAGAACATAACCAATGGACTTTTCATTCGTAAGTTGTCTTTTTTTGTTGAA
1 CTCAAGTATACAACAAGAACATAACCAATGGACTTTTCATTCGTAAGTTGTCTCTTTTCGTTGAA
*
26900293 GGGTTATATTGAGAACTCTTATTGTCCTCTTAGTTATCTCTATGTTTCCACTTCTAATGGCGAGA
66 GGGTTATATTGAGAACTCTTATTGTTCTCTTAGTTATCTCTATGTTTCCACTTCTAATGGCGAGA
*
26900358 ATAATTATTACTAATAAGATATCCAATAATCAAGTAATGTGGCACAATCTACAAAAAGTATGCAC
131 ATAATTATTACTAATAAGATATCCAATAATCAAGTAATGTGGCACAATCTACAAAAAATATGCAC
26900423 TTCATAC
196 TTCATAC
26900430 CTCAAGTATACAACAAGAACATAACCAATGGACTTTTCATTCGTAAGTTGTCTCTTTTCGTTGAA
1 CTCAAGTATACAACAAGAACATAACCAATGGACTTTTCATTCGTAAGTTGTCTCTTTTCGTTGAA
* *
26900495 GGGTTATATTGAGAACTCTTATTATTCTCTTAGTTATCTCTATGTTTTCACTTCTAATGGCGAGA
66 GGGTTATATTGAGAACTCTTATTGTTCTCTTAGTTATCTCTATGTTTCCACTTCTAATGGCGAGA
*
26900560 ATAATTATTACTAATAAGATATCCAATAATCAAGTAATGTGGCACAATCTACCAAAAATATGCAC
131 ATAATTATTACTAATAAGATATCCAATAATCAAGTAATGTGGCACAATCTACAAAAAATATGCAC
26900625 TTCATAC
196 TTCATAC
26900632 TTACAAAAAT
Statistics
Matches: 389, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
202 389 1.00
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (202 bp):
CTCAAGTATACAACAAGAACATAACCAATGGACTTTTCATTCGTAAGTTGTCTCTTTTCGTTGAA
GGGTTATATTGAGAACTCTTATTGTTCTCTTAGTTATCTCTATGTTTCCACTTCTAATGGCGAGA
ATAATTATTACTAATAAGATATCCAATAATCAAGTAATGTGGCACAATCTACAAAAAATATGCAC
TTCATAC
Found at i:26907177 original size:19 final size:19
Alignment explanation
Indices: 26907057--26907177 Score: 70
Period size: 19 Copynumber: 6.4 Consensus size: 19
26907047 CTATACAGGT
*
26907057 GTATGCACTTCGTGTGCCA
1 GTATGCACTTCATGTGCCA
* * * *
26907076 ATATACACTTCGTGTGTCA
1 GTATGCACTTCATGTGCCA
* * *
26907095 GGAATGCACCT-ATGCGCCA
1 -GTATGCACTTCATGTGCCA
*
26907114 GTATGCACTTCGTGTGCCAA
1 GTATGCACTTCATGTGCC-A
* *
26907134 GAATATG--CTT-ATGCGACA
1 G--TATGCACTTCATGTGCCA
*
26907152 ATATGCACTTCATGTGCCA
1 GTATGCACTTCATGTGCCA
26907171 GTATGCA
1 GTATGCA
26907178 ATTTTTGTAT
Statistics
Matches: 73, Mismatches: 21, Indels: 16
0.66 0.19 0.15
Matches are distributed among these distances:
16 4 0.05
18 12 0.16
19 42 0.58
20 11 0.15
22 4 0.05
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (19 bp):
GTATGCACTTCATGTGCCA
Found at i:26911701 original size:38 final size:38
Alignment explanation
Indices: 26911621--26911738 Score: 123
Period size: 38 Copynumber: 3.1 Consensus size: 38
26911611 TATGCGTCAG
* *** *
26911621 TATGCACTTCGTATGCCAGGAATGTGCTTATATGCCAG
1 TATGCACTTCGTGTGCCAGGAATGTGCTTATGCACCAA
*
26911659 TATGCACTTCGTGTGCTAGGAATGTGCTTATGCACCAA
1 TATGCACTTCGTGTGCCAGGAATGTGCTTATGCACCAA
* * *
26911697 TATGCACATT-GTGTACCAGG-ATGCGCTTCGTGCACCAA
1 TATGCAC-TTCGTGTGCCAGGAATGTGCTT-ATGCACCAA
26911735 TATG
1 TATG
26911739 TACTATATGT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
37 7 0.10
38 59 0.87
39 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (38 bp):
TATGCACTTCGTGTGCCAGGAATGTGCTTATGCACCAA
Found at i:26912586 original size:104 final size:104
Alignment explanation
Indices: 26912406--26912608 Score: 406
Period size: 104 Copynumber: 2.0 Consensus size: 104
26912396 CATACGGTTT
26912406 GTTTACTCTGTGTGCAAGTATAGGTGATCCTTGAAGCCTCAAGAAGAGAAGTCAGCATCCGTACC
1 GTTTACTCTGTGTGCAAGTATAGGTGATCCTTGAAGCCTCAAGAAGAGAAGTCAGCATCCGTACC
26912471 ACCATCTTCGACTCAACTAAGTTTGTATAACTCAACTAA
66 ACCATCTTCGACTCAACTAAGTTTGTATAACTCAACTAA
26912510 GTTTACTCTGTGTGCAAGTATAGGTGATCCTTGAAGCCTCAAGAAGAGAAGTCAGCATCCGTACC
1 GTTTACTCTGTGTGCAAGTATAGGTGATCCTTGAAGCCTCAAGAAGAGAAGTCAGCATCCGTACC
26912575 ACCATCTTCGACTCAACTAAGTTTGTATAACTCA
66 ACCATCTTCGACTCAACTAAGTTTGTATAACTCA
26912609 TTACATTTTG
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 99 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (104 bp):
GTTTACTCTGTGTGCAAGTATAGGTGATCCTTGAAGCCTCAAGAAGAGAAGTCAGCATCCGTACC
ACCATCTTCGACTCAACTAAGTTTGTATAACTCAACTAA
Found at i:26914140 original size:11 final size:11
Alignment explanation
Indices: 26914124--26914151 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
26914114 TTGTGAGCTT
26914124 AATTTGCAAAC
1 AATTTGCAAAC
26914135 AATTTGCAAAC
1 AATTTGCAAAC
26914146 AATTTG
1 AATTTG
26914152 ATCTTGTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (11 bp):
AATTTGCAAAC
Found at i:26919491 original size:41 final size:41
Alignment explanation
Indices: 26919436--26919523 Score: 176
Period size: 41 Copynumber: 2.1 Consensus size: 41
26919426 TTTAATGGGC
26919436 TTTTTTCAGTAAATACCTTGAGGAATAAGAAAAAAATAATT
1 TTTTTTCAGTAAATACCTTGAGGAATAAGAAAAAAATAATT
26919477 TTTTTTCAGTAAATACCTTGAGGAATAAGAAAAAAATAATT
1 TTTTTTCAGTAAATACCTTGAGGAATAAGAAAAAAATAATT
26919518 TTTTTT
1 TTTTTT
26919524 TACATTATGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (41 bp):
TTTTTTCAGTAAATACCTTGAGGAATAAGAAAAAAATAATT
Found at i:26919909 original size:20 final size:19
Alignment explanation
Indices: 26919867--26919932 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 19
26919857 CTATTTGGTG
*
26919867 TCGATACTATTTAAAATTA
1 TCGATACTATTTAAAAATA
26919886 TCGATACT-TTTATACAAATA
1 TCGATACTATTTA-A-AAATA
**
26919906 TCGATACTCATGAAAAAATA
1 TCGATACT-ATTTAAAAATA
26919926 TCGATAC
1 TCGATAC
26919933 CATGGGGCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 4 0.10
19 9 0.22
20 24 0.60
21 1 0.03
22 2 0.05
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (19 bp):
TCGATACTATTTAAAAATA
Found at i:26934323 original size:18 final size:19
Alignment explanation
Indices: 26934295--26934330 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26934285 ATGGTTGATA
*
26934295 CTTCAGGTTGCGTCGACAT
1 CTTCAGGTTGCATCGACAT
26934314 CTTC-GGTTGCATCGACA
1 CTTCAGGTTGCATCGACA
26934331 GTTTCGAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.17, C:0.28, G:0.25, T:0.31
Consensus pattern (19 bp):
CTTCAGGTTGCATCGACAT
Found at i:26938635 original size:13 final size:13
Alignment explanation
Indices: 26938617--26938641 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26938607 AAAAGTATCA
26938617 ATACTTTTTGGCG
1 ATACTTTTTGGCG
26938630 ATACTTTTTGGC
1 ATACTTTTTGGC
26938642 TAAGTATCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.20, T:0.48
Consensus pattern (13 bp):
ATACTTTTTGGCG
Done.