Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 100 of 171
Found at i:32397690 original size:41 final size:41
Alignment explanation
Indices: 32397632--32397726 Score: 145
Period size: 41 Copynumber: 2.3 Consensus size: 41
32397622 CTCAGGTTCG
* * **
32397632 GGGTAAAAGATTAGAATCTTCATTTTTCCCTTCTTGATTAA
1 GGGTAAAAGACTGGAATCTTCAAATTTCCCTTCTTGATTAA
*
32397673 GGGTAAAAGACTGGAATCTTTAAATTTCCCTTCTTGATTAA
1 GGGTAAAAGACTGGAATCTTCAAATTTCCCTTCTTGATTAA
32397714 GGGTAAAAGACTG
1 GGGTAAAAGACTG
32397727 AATGATGATG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.36
Consensus pattern (41 bp):
GGGTAAAAGACTGGAATCTTCAAATTTCCCTTCTTGATTAA
Found at i:32398185 original size:50 final size:49
Alignment explanation
Indices: 32397967--32398800 Score: 551
Period size: 50 Copynumber: 17.0 Consensus size: 49
32397957 TGTTTTCTAA
* * *
32397967 GGTACTGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCATATC-TTCTAA
1 GGTAC-GGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTC-AT
* ** ** * *
32398017 GGTACCCAGGTTCGTCGTTGTAGCCTCAACCTTTCCCTTAAAATC-TTCAT
1 GGTA--CGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
* * * * * * * * *
32398067 GATATCGAGTTCGCCATTACGACTTCAACCTTTCCCAT--CATATTTCAT
1 GGTA-CGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
* ** ** ** * *
32398115 GGTATCGGATTTGCCGTTGCGATCTCAACCTTTCCCGACACATCTTTTAA
1 GGTA-CGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
* *
32398165 GGTATCGGGTTCACCATTGCGGCCTCAACCTTTCCCTTCAAATC-TTCAT
1 GGTA-CGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
* ** *
32398214 GGTACTGGGTTTACTATTGCGGCCTCAACCTTTCCCATCACA--TTTCAT
1 GGTAC-GGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
* * * * *
32398262 GGTAC-CG---ACCGTTGCGGCCTTAATCTTTCCCATCACATCTTCTGA-
1 GGTACGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTT-TCAT
* * * * * * * *
32398307 GGTACCGAGTTCACCTTTACGACCTCATCCTTTCCCGTCACATCTTTTAA
1 GGTA-CGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
** * * *
32398357 GGTACCGGGTTCGTCGTTGCGACCTTAACCTTTCCCTTCAAATC-TTCAT
1 GGTA-CGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
** * *
32398406 GGTACTGGGTTCACCGTTGTAGCCTCAACCTTTCCCTTAAAATC-TTCAT
1 GGTAC-GGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
* * * *
32398455 GGTACCAGGTTCACCATTGCGACCTCAACCTTTCCCATCACA--TTTCAT
1 GGTA-CGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
* * * * * * *
32398503 GGTACTGGATTCTCCGCTGCGGTCTCAACCTTTCCCGTCACATCTTTAAA
1 GGTAC-GGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
* * *
32398553 GGTATCGGGTTCAGCGTTACGGCCTCAACCTTTCCCTTCAAATC-TTCAT
1 GGTA-CGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
* *
32398602 GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTGA-
1 GGTAC-GGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTT-TCAT
* * * * *
32398652 GGTACCGGATTCGCCGTCGCGGTCTCAATCC-TTCCCTTCAAATC-TTCAT
1 GGTA-CGGGTTCACCGTTGCGGCCTCAA-CCTTTCCCTTCACATCTTTCAT
* * * *
32398701 GGTACAGGGTTTACCATTGCGGCCTCAACCTTTCCCGTCACATC-TTCTAA
1 GGTAC-GGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTC-AT
** * *
32398751 GGTATCGGGTTCGTCGTTGCGGCCTCAACCTTTCCCTCCAAATC-TTCAT
1 GGTA-CGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
32398800 G
1 G
32398801 TTTTTCTCAA
Statistics
Matches: 612, Mismatches: 139, Indels: 67
0.75 0.17 0.08
Matches are distributed among these distances:
43 26 0.04
45 6 0.01
46 4 0.01
47 4 0.01
48 88 0.14
49 217 0.35
50 224 0.37
51 42 0.07
52 1 0.00
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.33
Consensus pattern (49 bp):
GGTACGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTTCAT
Found at i:32398241 original size:49 final size:49
Alignment explanation
Indices: 32397967--32398800 Score: 611
Period size: 49 Copynumber: 17.0 Consensus size: 49
32397957 TGTTTTCTAA
* * *
32397967 GGTACTGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCTAA
1 GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTC-AT
** ** ** * *
32398017 GGTACCCAGGTTCGTCGTTGTAGCCTCAACCTTTCCCTTAAAATCTTCAT
1 GGTA-CTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
* * * * * * * * *
32398067 GATA-TCGAGTTCGCCATTACGACTTCAACCTTTCCCATCATAT-TTCAT
1 GGTACT-GGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
* ** ** ** * *
32398115 GGTA-TCGGATTTGCCGTTGCGATCTCAACCTTTCCCGACACATCTTTTAA
1 GGTACT-GGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATC-TTCAT
* *
32398165 GGTA-TCGGGTTCACCATTGCGGCCTCAACCTTTCCCTTCAAATCTTCAT
1 GGTACT-GGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
* ** *
32398214 GGTACTGGGTTTACTATTGCGGCCTCAACCTTTCCCATCACAT-TTCAT
1 GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
* * * *
32398262 GGTAC--CG---ACCGTTGCGGCCTTAATCTTTCCCATCACATCTTC-T
1 GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
* * * * * * * * *
32398305 GAGGTACCGAGTTCACCTTTACGACCTCATCCTTTCCCGTCACATCTTTTAA
1 --GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATC-TTCAT
* ** * * *
32398357 GGTACCGGGTTCGTCGTTGCGACCTTAACCTTTCCCTTCAAATCTTCAT
1 GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
** * *
32398406 GGTACTGGGTTCACCGTTGTAGCCTCAACCTTTCCCTTAAAATCTTCAT
1 GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
** * * *
32398455 GGTACCAGGTTCACCATTGCGACCTCAACCTTTCCCATCACAT-TTCAT
1 GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
* * * * * * *
32398503 GGTACTGGATTCTCCGCTGCGGTCTCAACCTTTCCCGTCACATCTTTAAA
1 GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATC-TTCAT
* * *
32398553 GGTA-TCGGGTTCAGCGTTACGGCCTCAACCTTTCCCTTCAAATCTTCAT
1 GGTACT-GGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
*
32398602 GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCATCACATCTTC-T
1 GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
* * * * * *
32398650 GAGGTACCGGATTCGCCGTCGCGGTCTCAATCC-TTCCCTTCAAATCTTCAT
1 --GGTACTGGGTTCACCGTTGCGGCCTCAA-CCTTTCCCTTCACATCTTCAT
* * * * *
32398701 GGTACAGGGTTTACCATTGCGGCCTCAACCTTTCCCGTCACATCTTCTAA
1 GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTC-AT
** * *
32398751 GGTA-TCGGGTTCGTCGTTGCGGCCTCAACCTTTCCCTCCAAATCTTCAT
1 GGTACT-GGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
32398800 G
1 G
32398801 TTTTTCTCAA
Statistics
Matches: 614, Mismatches: 144, Indels: 53
0.76 0.18 0.07
Matches are distributed among these distances:
43 28 0.05
44 3 0.00
45 5 0.01
46 1 0.00
47 1 0.00
48 89 0.14
49 225 0.37
50 221 0.36
51 41 0.07
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.33
Consensus pattern (49 bp):
GGTACTGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT
Found at i:32398244 original size:99 final size:99
Alignment explanation
Indices: 32397964--32398800 Score: 684
Period size: 99 Copynumber: 8.5 Consensus size: 99
32397954 TCTTGTTTTC
* * * * **
32397964 TAAGGTACTGGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCTAAGGTACCCAGGTT
1 TAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTC-ATGGTA-CTGGGTT
** ** * *
32398029 CGTCGTTGTAGCCTCAACCTTTCCCTTA-AAATC-TT
64 CACCGTTGCGGCCTCAACCTTTCCC-GACACATCTTT
* * * * * * * * * * * * * *
32398064 CATGATATCGAGTTCGCCATTACGACTTCAACCTTTCCCATCATAT-TTCATGGTA-TCGGATTT
1 TAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACT-GGGTTC
* **
32398127 GCCGTTGCGATCTCAACCTTTCCCGACACATCTTT
65 ACCGTTGCGGCCTCAACCTTTCCCGACACATCTTT
* * *
32398162 TAAGGTATCGGGTTCACCATTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTTA
1 TAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTCA
**
32398227 CTATTGCGGCCTCAACCTTTCCC-ATCACA--TTT
66 CCGTTGCGGCCTCAACCTTTCCCGA-CACATCTTT
* * * * * * * *
32398259 CATGGTACC--G---ACCGTTGCGGCCTTAATCTTTCCCATCACATCTTC-TGAGGTACCGAGTT
1 TAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCAT--GGTACTGGGTT
* * * * *
32398318 CACCTTTACGACCTCATCCTTTCCCGTCACATCTTT
64 CACCGTTGCGGCCTCAACCTTTCCCGACACATCTTT
** * *
32398354 TAAGGTACCGGGTTCGTCGTTGCGACCTTAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTCA
1 TAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTCA
** * *
32398419 CCGTTGTAGCCTCAACCTTTCCCTTA-AAATC-TT
66 CCGTTGCGGCCTCAACCTTTCCC-GACACATCTTT
* * * * * * * * *
32398452 CATGGTACCAGGTTCACCATTGCGACCTCAACCTTTCCCATCACAT-TTCATGGTACTGGATTCT
1 TAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTCA
* * *
32398516 CCGCTGCGGTCTCAACCTTTCCCGTCACATCTTT
66 CCGTTGCGGCCTCAACCTTTCCCGACACATCTTT
* * * *
32398550 AAAGGTATCGGGTTCAGCGTTACGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTCA
1 TAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTCA
*
32398615 CCGTTGCGGCCTCAACCTTTCCC-ATCACATCTTC
66 CCGTTGCGGCCTCAACCTTTCCCGA-CACATCTTT
* * * * * * *
32398649 TGAGGTACCGGATTCGCCGTCGCGGTCTCAATCC-TTCCCTTCAAATCTTCATGGTACAGGGTTT
1 TAAGGTACCGGGTTCACCGTTGCGGCCTCAA-CCTTTCCCTTCAAATCTTCATGGTACTGGGTTC
* * *
32398713 ACCATTGCGGCCTCAACCTTTCCCGTCACATCTTC
65 ACCGTTGCGGCCTCAACCTTTCCCGACACATCTTT
* ** *
32398748 TAAGGTATCGGGTTCGTCGTTGCGGCCTCAACCTTTCCCTCCAAATCTTCATG
1 TAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATG
32398801 TTTTTCTCAA
Statistics
Matches: 583, Mismatches: 129, Indels: 51
0.76 0.17 0.07
Matches are distributed among these distances:
91 1 0.00
92 30 0.05
93 32 0.05
95 11 0.02
96 1 0.00
97 75 0.13
98 123 0.21
99 242 0.42
100 67 0.11
101 1 0.00
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.33
Consensus pattern (99 bp):
TAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTCA
CCGTTGCGGCCTCAACCTTTCCCGACACATCTTT
Found at i:32399787 original size:20 final size:19
Alignment explanation
Indices: 32399741--32399814 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 19
32399731 CGACCTCTCC
*
32399741 TTTTCTTTTTCCCATTTTTTCT
1 TTTTCTTTTT-CC-TTTCTT-T
*
32399763 ATTTTATTTTTCCTTTTCTTT
1 -TTTTCTTTTTCC-TTTCTTT
*
32399784 TTTTCCTTTTTTCTTTCTTT
1 TTTT-CTTTTTCCTTTCTTT
32399804 TCTTTCTTTTT
1 T-TTTCTTTTT
32399815 TATTATTGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
20 18 0.41
21 10 0.23
22 7 0.16
23 9 0.20
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTCTTTTTCCTTTCTTT
Found at i:32399793 original size:21 final size:21
Alignment explanation
Indices: 32399769--32399815 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
32399759 TTCTATTTTA
32399769 TTTTTCCTTTTCTTTT-TTTCC
1 TTTTTCC-TTTCTTTTCTTTCC
* *
32399790 TTTTTTCTTTCTTTTCTTTCT
1 TTTTTCCTTTCTTTTCTTTCC
32399811 TTTTT
1 TTTTT
32399816 ATTATTGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTTCCTTTCTTTTCTTTCC
Found at i:32399815 original size:20 final size:20
Alignment explanation
Indices: 32399777--32399815 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
32399767 TATTTTTCCT
32399777 TTTCTTTTTTTCCTTTTTTC
1 TTTCTTTTTTTCCTTTTTTC
32399797 TTTCTTTTCTTT-CTTTTTT
1 TTTCTTTT-TTTCCTTTTTT
32399816 ATTATTGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTCTTTTTTTCCTTTTTTC
Found at i:32404667 original size:29 final size:30
Alignment explanation
Indices: 32404629--32404749 Score: 142
Period size: 29 Copynumber: 4.1 Consensus size: 30
32404619 CGGAGAGTTT
* *
32404629 AGGGTAAAAATGTAATTTTTGAGAAGTTTG
1 AGGGCAAAAATGTAATTTTTGAGAAGTTCG
*
32404659 AGGGCAAAAATGTAATTTTTG-TAAGTTCG
1 AGGGCAAAAATGTAATTTTTGAGAAGTTCG
* *
32404688 AGGGCAAAAATGT-TTTTTTGAGAAGTT-T
1 AGGGCAAAAATGTAATTTTTGAGAAGTTCG
* *
32404716 AGGGTC-AAAATGTAATTTTGGAAAAGTTCG
1 AGGG-CAAAAATGTAATTTTTGAGAAGTTCG
32404746 AGGG
1 AGGG
32404750 TTAAAATATG
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
28 17 0.22
29 36 0.47
30 24 0.31
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (30 bp):
AGGGCAAAAATGTAATTTTTGAGAAGTTCG
Found at i:32404725 original size:58 final size:57
Alignment explanation
Indices: 32404629--32404778 Score: 178
Period size: 58 Copynumber: 2.6 Consensus size: 57
32404619 CGGAGAGTTT
* * *
32404629 AGGGTAAAAATGTAATTTTTGAGAAGTTTGAGGGCAAAAATGTAATTTTTG-TAAGTTCG
1 AGGGTAAAAATGT-TTTTTTGAGAAGTTT-AGGGC-AAAATGTAATTTTGGAAAAGTTCG
*
32404688 AGGGCAAAAATGTTTTTTTGAGAAGTTTAGGGTCAAAATGTAATTTTGGAAAAGTTCG
1 AGGGTAAAAATGTTTTTTTGAGAAGTTTAGGG-CAAAATGTAATTTTGGAAAAGTTCG
* *
32404746 AGGGTTAAAATATGATTTTTGGA-AAGTTTAGGG
1 AGGG-TAAAA-ATGTTTTTTTGAGAAGTTTAGGG
32404779 ACCTTTTGGG
Statistics
Matches: 80, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
57 18 0.22
58 26 0.32
59 26 0.32
60 10 0.12
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (57 bp):
AGGGTAAAAATGTTTTTTTGAGAAGTTTAGGGCAAAATGTAATTTTGGAAAAGTTCG
Found at i:32404756 original size:30 final size:30
Alignment explanation
Indices: 32404629--32404773 Score: 143
Period size: 30 Copynumber: 4.9 Consensus size: 30
32404619 CGGAGAGTTT
* *
32404629 AGGGTAAAAATGTAATTTTTGAGAAGTTTG
1 AGGGTAAAAATGTAATTTTTGAAAAGTTCG
* *
32404659 AGGGCAAAAATGTAATTTTTG-TAAGTTCG
1 AGGGTAAAAATGTAATTTTTGAAAAGTTCG
* * * *
32404688 AGGGCAAAAATGT-TTTTTTGAGAAGTT-T
1 AGGGTAAAAATGTAATTTTTGAAAAGTTCG
* *
32404716 AGGGTCAAAATGTAATTTTGGAAAAGTTCG
1 AGGGTAAAAATGTAATTTTTGAAAAGTTCG
* * * *
32404746 AGGGTTAAAATATGATTTTTGGAAAGTT
1 AGGGTAAAAATGTAATTTTTGAAAAGTT
32404774 TAGGGACCTT
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
28 17 0.18
29 35 0.37
30 43 0.45
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (30 bp):
AGGGTAAAAATGTAATTTTTGAAAAGTTCG
Found at i:32405615 original size:97 final size:97
Alignment explanation
Indices: 32405447--32405639 Score: 278
Period size: 97 Copynumber: 2.0 Consensus size: 97
32405437 CAAGTTGAAG
* * * * *
32405447 GAGGTGATATTGCTAATGTTGACGTGACAACTCCTGATTGGGTGGAGGAGGGTGGCAGCCGCACA
1 GAGGTGATATTGCTAATGTTAACGTGACAACTCCTGATTGGGTGGAAGAGGATGGCAACAGCACA
* * *
32405512 AGTGGCTTAGTAGATTAGGGTTTTTGTTTTTA
66 AATGGCTTAGCAGATTAGGGTTTCTGTTTTTA
* ** *
32405544 GAGGTGATGTTGCTGGTGTTAACGTGGCAACTCCTGATTGGGTGGAAGAGGATGGCAACAGCACA
1 GAGGTGATATTGCTAATGTTAACGTGACAACTCCTGATTGGGTGGAAGAGGATGGCAACAGCACA
32405609 AATGGCTTAGCAGATTAGGGTTTCTGTTTTT
66 AATGGCTTAGCAGATTAGGGTTTCTGTTTTT
32405640 GGTTTAGTTT
Statistics
Matches: 84, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
97 84 1.00
ACGTcount: A:0.22, C:0.13, G:0.34, T:0.31
Consensus pattern (97 bp):
GAGGTGATATTGCTAATGTTAACGTGACAACTCCTGATTGGGTGGAAGAGGATGGCAACAGCACA
AATGGCTTAGCAGATTAGGGTTTCTGTTTTTA
Found at i:32410631 original size:29 final size:30
Alignment explanation
Indices: 32410598--32410751 Score: 188
Period size: 29 Copynumber: 5.2 Consensus size: 30
32410588 ATTAAAACTA
32410598 GGTTAAATTTGAATTTTTGGAAAATTT-GG
1 GGTTAAATTTGAATTTTTGGAAAATTTAGG
* *
32410627 GGTTAAATTTGAATTTTTAGAAAGTTTAGG
1 GGTTAAATTTGAATTTTTGGAAAATTTAGG
* * *
32410657 GGTCAATTTTGAA-TTTTGGAAAATTTAGT
1 GGTTAAATTTGAATTTTTGGAAAATTTAGG
* * * *
32410686 GATAAAACTTGGATTTTTGGAAAATTTA-G
1 GGTTAAATTTGAATTTTTGGAAAATTTAGG
* *
32410715 GGTCAAATTTGAATTTTTGGAAAGTTTAGG
1 GGTTAAATTTGAATTTTTGGAAAATTTAGG
32410745 GGTTAAA
1 GGTTAAA
32410752 ATAAGATTTT
Statistics
Matches: 103, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
29 69 0.67
30 34 0.33
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.42
Consensus pattern (30 bp):
GGTTAAATTTGAATTTTTGGAAAATTTAGG
Found at i:32410760 original size:59 final size:60
Alignment explanation
Indices: 32410602--32410761 Score: 186
Period size: 59 Copynumber: 2.7 Consensus size: 60
32410592 AAACTAGGTT
* *
32410602 AAATTTGAATTTTTGGAAAATTT-GGGGTT-AAATTTGAATTTTTAGAAAGTTTAGGGGTC
1 AAATTTGAATTTTTGGAAAATTTAGGGGTTAAAATTAG-ATTTTTAGAAAATTTAGGGGTC
* * * * *
32410661 AATTTTGAA-TTTTGGAAAATTTA-GTGATAAAACTTGGATTTTTGGAAAATTTA-GGGTC
1 AAATTTGAATTTTTGGAAAATTTAGGGGTTAAAA-TTAGATTTTTAGAAAATTTAGGGGTC
* *
32410719 AAATTTGAATTTTTGGAAAGTTTAGGGGTTAAAATAAGATTTT
1 AAATTTGAATTTTTGGAAAATTTAGGGGTTAAAATTAGATTTT
32410762 AAAATAAAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
58 29 0.35
59 45 0.54
60 10 0.12
ACGTcount: A:0.34, C:0.02, G:0.22, T:0.42
Consensus pattern (60 bp):
AAATTTGAATTTTTGGAAAATTTAGGGGTTAAAATTAGATTTTTAGAAAATTTAGGGGTC
Found at i:32415647 original size:23 final size:23
Alignment explanation
Indices: 32415575--32415722 Score: 169
Period size: 23 Copynumber: 6.4 Consensus size: 23
32415565 ACGGAACAAG
* *
32415575 CAGAGAGTAC-CAAAGTACTAA-
1 CAGAGAGCACACAAAGTGCTAAT
*
32415596 CAGAGAGCACA-TAAGTGCTGGGCAA-
1 CAGAGAGCACACAAAGTGCT----AAT
*
32415621 CAGAGAGCACACACAGTGCTAAT
1 CAGAGAGCACACAAAGTGCTAAT
* *
32415644 CAGAGAGTACACAAAGTACTAAT
1 CAGAGAGCACACAAAGTGCTAAT
32415667 CAGAGAGCACACAAAGTGCTAAT
1 CAGAGAGCACACAAAGTGCTAAT
*
32415690 CAGAGAACACACAAAGTGCTAAT
1 CAGAGAGCACACAAAGTGCTAAT
32415713 CAGAGAGCAC
1 CAGAGAGCAC
32415723 GAGACGTGCT
Statistics
Matches: 108, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
21 15 0.14
22 2 0.02
23 72 0.67
25 13 0.12
26 6 0.06
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.13
Consensus pattern (23 bp):
CAGAGAGCACACAAAGTGCTAAT
Found at i:32415671 original size:46 final size:46
Alignment explanation
Indices: 32415621--32415743 Score: 176
Period size: 46 Copynumber: 2.7 Consensus size: 46
32415611 TGCTGGGCAA
*
32415621 CAGAGAGCACACACAGTGCTAATCAGAGAGTACACAAAGTACTAAT
1 CAGAGAGCACACACAGTGCTAATCAGAGAGCACACAAAGTACTAAT
* * *
32415667 CAGAGAGCACACAAAGTGCTAATCAGAGAACACACAAAGTGCTAAT
1 CAGAGAGCACACACAGTGCTAATCAGAGAGCACACAAAGTACTAAT
* *
32415713 CAGAGAGCACGAGAC-GTGCTAAACAGAGAGC
1 CAGAGAGCAC-ACACAGTGCTAATCAGAGAGC
32415744 GCGCTAGTGT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 66 0.97
47 2 0.03
ACGTcount: A:0.43, C:0.22, G:0.23, T:0.12
Consensus pattern (46 bp):
CAGAGAGCACACACAGTGCTAATCAGAGAGCACACAAAGTACTAAT
Found at i:32415694 original size:69 final size:66
Alignment explanation
Indices: 32415575--32415719 Score: 193
Period size: 69 Copynumber: 2.1 Consensus size: 66
32415565 ACGGAACAAG
* * *
32415575 CAGAGAGTACCAAAGTACTAACAGAGAGCACATAAGTGCTGGGCAACAGAGAGCACACACAGTGC
1 CAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCT--G-AACAGAGAACACACAAAGTGC
32415640 TAAT
63 TAAT
32415644 CAGAGAGTACACAAAGTACTAATCAGAGAGCACACAAAGTGCT-AATCAGAGAACACACAAAGTG
1 CAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACA-AAAGTGCTGAA-CAGAGAACACACAAAGTG
32415708 CTAAT
62 CTAAT
32415713 CAGAGAG
1 CAGAGAG
32415720 CACGAGACGT
Statistics
Matches: 69, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
68 2 0.03
69 38 0.55
70 11 0.16
71 11 0.16
72 7 0.10
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.13
Consensus pattern (66 bp):
CAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCTGAACAGAGAACACACAAAGTGCTAA
T
Found at i:32415731 original size:23 final size:22
Alignment explanation
Indices: 32415575--32415743 Score: 144
Period size: 23 Copynumber: 7.4 Consensus size: 22
32415565 ACGGAACAAG
* * *
32415575 CAGAGAGTACCAAAGTACTAA-
1 CAGAGAGCACAAAAGTGCTAAT
*
32415596 CAGAGAGCACATAAGTGCTGGGCAA-
1 CAGAGAGCACAAAAGTGCT----AAT
*
32415621 CAGAGAGCACACACAGTGCTAAT
1 CAGAGAGCACA-AAAGTGCTAAT
* *
32415644 CAGAGAGTACACAAAGTACTAAT
1 CAGAGAGCACA-AAAGTGCTAAT
32415667 CAGAGAGCACACAAAGTGCTAAT
1 CAGAGAGCACA-AAAGTGCTAAT
*
32415690 CAGAGAACACACAAAGTGCTAAT
1 CAGAGAGCACA-AAAGTGCTAAT
* * *
32415713 CAGAGAGCACGAGACGTGCTAAA
1 CAGAGAGCAC-AAAAGTGCTAAT
32415736 CAGAGAGC
1 CAGAGAGC
32415744 GCGCTAGTGT
Statistics
Matches: 125, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
21 15 0.12
22 2 0.02
23 88 0.70
24 1 0.01
25 13 0.10
26 6 0.05
ACGTcount: A:0.43, C:0.21, G:0.24, T:0.12
Consensus pattern (22 bp):
CAGAGAGCACAAAAGTGCTAAT
Found at i:32423004 original size:23 final size:23
Alignment explanation
Indices: 32422934--32423102 Score: 166
Period size: 23 Copynumber: 7.3 Consensus size: 23
32422924 ACGGAACAAG
* *
32422934 CAGAGAGTAC-CAAAGTACT-AA
1 CAGAGAGCACACAAAGTGCTAAA
* *
32422955 CAGAGAGCACA-TAAGTGCTGGGCAA
1 CAGAGAGCACACAAAGTGCT---AAA
*
32422980 CAGAGAGCACACACAGTGCTAAA
1 CAGAGAGCACACAAAGTGCTAAA
* * *
32423003 CAGAGAGTACACAAAGTACTAAT
1 CAGAGAGCACACAAAGTGCTAAA
*
32423026 CAGAGAGCACACAAAGTGCTAAT
1 CAGAGAGCACACAAAGTGCTAAA
*
32423049 CAGAGAGCACACAAAGTGCTAAT
1 CAGAGAGCACACAAAGTGCTAAA
* *
32423072 CAGAGAGCACGA-GACGTGCTAAA
1 CAGAGAGCAC-ACAAAGTGCTAAA
32423095 CAGAGAGC
1 CAGAGAGC
32423103 GCGCTAGTGT
Statistics
Matches: 126, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
21 15 0.12
23 91 0.72
24 1 0.01
25 13 0.10
26 6 0.05
ACGTcount: A:0.43, C:0.21, G:0.24, T:0.12
Consensus pattern (23 bp):
CAGAGAGCACACAAAGTGCTAAA
Found at i:32423030 original size:46 final size:46
Alignment explanation
Indices: 32422980--32423102 Score: 185
Period size: 46 Copynumber: 2.7 Consensus size: 46
32422970 TGCTGGGCAA
*
32422980 CAGAGAGCACACACAGTGCTAAACAGAGAGTACACAAAGTACTAAT
1 CAGAGAGCACACACAGTGCTAAACAGAGAGCACACAAAGTACTAAT
* * *
32423026 CAGAGAGCACACAAAGTGCTAATCAGAGAGCACACAAAGTGCTAAT
1 CAGAGAGCACACACAGTGCTAAACAGAGAGCACACAAAGTACTAAT
*
32423072 CAGAGAGCACGAGAC-GTGCTAAACAGAGAGC
1 CAGAGAGCAC-ACACAGTGCTAAACAGAGAGC
32423103 GCGCTAGTGT
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
46 67 0.97
47 2 0.03
ACGTcount: A:0.43, C:0.22, G:0.24, T:0.11
Consensus pattern (46 bp):
CAGAGAGCACACACAGTGCTAAACAGAGAGCACACAAAGTACTAAT
Found at i:32423053 original size:69 final size:66
Alignment explanation
Indices: 32422934--32423078 Score: 193
Period size: 69 Copynumber: 2.1 Consensus size: 66
32422924 ACGGAACAAG
* *
32422934 CAGAGAGTACCAAAGTACTAACAGAGAGCACATAAGTGCTGGGCAACAGAGAGCACACACAGTGC
1 CAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCT--G-AACAGAGAGCACACAAAGTGC
32422999 TAAA
63 TAAA
32423003 CAGAGAGTACACAAAGTACTAATCAGAGAGCACACAAAGTGCT-AATCAGAGAGCACACAAAGTG
1 CAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACA-AAAGTGCTGAA-CAGAGAGCACACAAAGTG
*
32423067 CTAAT
62 CTAAA
32423072 CAGAGAG
1 CAGAGAG
32423079 CACGAGACGT
Statistics
Matches: 69, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
68 2 0.03
69 38 0.55
70 11 0.16
71 11 0.16
72 7 0.10
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.12
Consensus pattern (66 bp):
CAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCTGAACAGAGAGCACACAAAGTGCTAA
A
Found at i:32424994 original size:28 final size:27
Alignment explanation
Indices: 32424938--32424996 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
32424928 AGGAATTATC
32424938 AAAATGAATTTAATAATTTTTCAAAAA
1 AAAATGAATTTAATAATTTTTCAAAAA
*
32424965 AAAATTAATTTAATAATTTTT-ATAAAA
1 AAAATGAATTTAATAATTTTTCA-AAAA
32424992 AAAAT
1 AAAAT
32424997 AGTAAATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 1 0.03
27 29 0.97
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (27 bp):
AAAATGAATTTAATAATTTTTCAAAAA
Found at i:32430779 original size:13 final size:13
Alignment explanation
Indices: 32430761--32430797 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
32430751 TATTGTTAGA
*
32430761 AAAATTAAATAAG
1 AAAATTAAAAAAG
32430774 AAAATTGAAAAAAG
1 AAAATT-AAAAAAG
32430788 AAAATTAAAA
1 AAAATTAAAA
32430798 TAATGATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (13 bp):
AAAATTAAAAAAG
Found at i:32441943 original size:18 final size:18
Alignment explanation
Indices: 32441911--32441946 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
32441901 ACCTCCAGAA
*
32441911 AAAGGGGAAATAGAAGGG
1 AAAGGGGAAAGAGAAGGG
*
32441929 AAAGGGGAAGGAGAAGGG
1 AAAGGGGAAAGAGAAGGG
32441947 GAAACCTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.50, T:0.03
Consensus pattern (18 bp):
AAAGGGGAAAGAGAAGGG
Found at i:32448246 original size:27 final size:27
Alignment explanation
Indices: 32448216--32448273 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
32448206 GTCCTGATGG
32448216 ACTTCCCGCACTAGATAGTCTTGACAA
1 ACTTCCCGCACTAGATAGTCTTGACAA
* * *
32448243 ACTTCTCGCATTAGATAGTTTTGACAA
1 ACTTCCCGCACTAGATAGTCTTGACAA
32448270 ACTT
1 ACTT
32448274 TTCACAGTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (27 bp):
ACTTCCCGCACTAGATAGTCTTGACAA
Found at i:32448284 original size:27 final size:27
Alignment explanation
Indices: 32448227--32448331 Score: 84
Period size: 27 Copynumber: 3.9 Consensus size: 27
32448217 CTTCCCGCAC
* *
32448227 TAGATAGTCTTGACAAACTTCTCGCAT
1 TAGATAGTCTTGACAAACTTCTCACAG
* *
32448254 TAGATAGTTTTGACAAACTTTTCACAG
1 TAGATAGTCTTGACAAACTTCTCACAG
* * * * * *
32448281 TAGATAATCCTAACGAACTTCTCGCAT
1 TAGATAGTCTTGACAAACTTCTCACAG
* * **
32448308 TAAATAGTCCTGACGGACTTCTCA
1 TAGATAGTCTTGACAAACTTCTCA
32448332 TATAAATGAT
Statistics
Matches: 61, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.32
Consensus pattern (27 bp):
TAGATAGTCTTGACAAACTTCTCACAG
Found at i:32452729 original size:23 final size:23
Alignment explanation
Indices: 32452703--32452748 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
32452693 TTAAAAGCGT
*
32452703 TTATGTAATTTAATTTTAGAAAA
1 TTATGTAATATAATTTTAGAAAA
* * *
32452726 TTATTTCATATCATTTTAGAAAA
1 TTATGTAATATAATTTTAGAAAA
32452749 AATTTATCTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (23 bp):
TTATGTAATATAATTTTAGAAAA
Found at i:32453882 original size:14 final size:14
Alignment explanation
Indices: 32453863--32453889 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32453853 AATGAAGAAA
32453863 CAGCTAAGCAAAAC
1 CAGCTAAGCAAAAC
32453877 CAGCTAAGCAAAA
1 CAGCTAAGCAAAA
32453890 GCTTTCCGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.26, G:0.15, T:0.07
Consensus pattern (14 bp):
CAGCTAAGCAAAAC
Found at i:32455415 original size:83 final size:82
Alignment explanation
Indices: 32455294--32455501 Score: 210
Period size: 83 Copynumber: 2.5 Consensus size: 82
32455284 ATTTACCCAT
* * * * **
32455294 AAAAGTTGCTGAGA---TCGTTTTTATTTGTTCAGTAACAGTAGTAGATTGTGTTCTTCAATTAT
1 AAAAGTTGCTGAGATTGTTGTTTTTATTTGTTCAGTGACAGTAGTAGATTCTATAATTCAATTAT
32455356 GCTTGG-TCGTG-CTTCTA
66 GCTTGGCT-GTGCCTT-TA
* * * * *
32455373 AAAAGTTGCTGAGATTGTTGTTTTTAATTTGTTCAGTGACAGTAATTGCTTCTATAATTCATTTG
1 AAAAGTTGCTGAGATTGTTGTTTTT-ATTTGTTCAGTGACAGTAGTAGATTCTATAATTCAATTA
*
32455438 TGCTTGGCTTTGCCTTTA
65 TGCTTGGCTGTGCCTTTA
* * *
32455456 AAAAGGTGCTGAGATTGTTGTTTATCATTTGTTCAGTGACGGTAGT
1 AAAAGTTGCTGAGATTGTTGTTT-TTATTTGTTCAGTGACAGTAGT
32455502 TTTACAAATC
Statistics
Matches: 106, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
79 14 0.13
82 7 0.07
83 80 0.75
84 5 0.05
ACGTcount: A:0.23, C:0.12, G:0.22, T:0.44
Consensus pattern (82 bp):
AAAAGTTGCTGAGATTGTTGTTTTTATTTGTTCAGTGACAGTAGTAGATTCTATAATTCAATTAT
GCTTGGCTGTGCCTTTA
Found at i:32459155 original size:17 final size:18
Alignment explanation
Indices: 32459120--32459156 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
32459110 AAAAAAAAAT
32459120 TAAAATTCAATATATTTA
1 TAAAATTCAATATATTTA
32459138 TAAAATTTCAA-A-ATTTA
1 TAAAA-TTCAATATATTTA
32459155 TA
1 TA
32459157 TTTTAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 6 0.33
19 5 0.28
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (18 bp):
TAAAATTCAATATATTTA
Found at i:32460046 original size:274 final size:275
Alignment explanation
Indices: 32459557--32460108 Score: 1052
Period size: 274 Copynumber: 2.0 Consensus size: 275
32459547 ATAGGTAATC
32459557 ATTAGAGCCTTTAAACACTCAGTGCTTATGATAATAGCCAGGGTGATAACGATAATGTTAAAGAT
1 ATTAGAGCCTTTAAACACTCAGTGCTTATGATAATAGCCAGGGTGATAACGATAATGTTAAAGAT
*
32459622 ATTCAGATTTTGATTTGAAATTCACACATGTTTACGATAGTGATTATGGAATAAATAATCTAGCA
66 ATTCAGATTTTGATTTGAAATTCACACATGTTTACGATAGTGATTATGGAATAAATAATCTAACA
*
32459687 GGACATTTATAAGTTCGTCCTACTAAATTTGTTGCATTCCCAAAAGTGAATGCAAACATAAAGAA
131 GGACATTTATAAGTTCGTCCTACTAAATTTGTTGCATTCCCAAAAGTGAATACAAACATAAAGAA
*
32459752 AATAAAAGATATAATTATGGACCACT-AAAAGTGGGAACATAGTGATGAATAAGAGAACAATGAG
196 AATAAAAGATATAATTATGGACCAATAAAAAGTGGGAACATAGTGATGAATAAGAGAACAATGAG
32459816 AGTTATGCCACAAAT
261 AGTTATGCCACAAAT
*
32459831 ATTAGAGCCTTTAACCACTCAGTGCTTATGATAATAGCCAGGGTGATAACGATAATGTTAAAGAT
1 ATTAGAGCCTTTAAACACTCAGTGCTTATGATAATAGCCAGGGTGATAACGATAATGTTAAAGAT
32459896 ATTCAGATTTTGATTTGAAATTCACACATGTTTACGATAGTGATTATGGAATAAATAATCTAACA
66 ATTCAGATTTTGATTTGAAATTCACACATGTTTACGATAGTGATTATGGAATAAATAATCTAACA
*
32459961 GGATATTTATAAGTTCGTCCTACTAAATTTGTTGCATTCCCAAAAGTGAATACAAACATAAAGAA
131 GGACATTTATAAGTTCGTCCTACTAAATTTGTTGCATTCCCAAAAGTGAATACAAACATAAAGAA
32460026 AATAAAAGATATAATTATGGACCAATAAAAAGTGGGAACATAGTGATGAATAAGAGAACAATGAG
196 AATAAAAGATATAATTATGGACCAATAAAAAGTGGGAACATAGTGATGAATAAGAGAACAATGAG
32460091 AGTTATGCCACAAAT
261 AGTTATGCCACAAAT
32460106 ATT
1 ATT
32460109 TTGTTTTTGT
Statistics
Matches: 272, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
274 216 0.79
275 56 0.21
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.29
Consensus pattern (275 bp):
ATTAGAGCCTTTAAACACTCAGTGCTTATGATAATAGCCAGGGTGATAACGATAATGTTAAAGAT
ATTCAGATTTTGATTTGAAATTCACACATGTTTACGATAGTGATTATGGAATAAATAATCTAACA
GGACATTTATAAGTTCGTCCTACTAAATTTGTTGCATTCCCAAAAGTGAATACAAACATAAAGAA
AATAAAAGATATAATTATGGACCAATAAAAAGTGGGAACATAGTGATGAATAAGAGAACAATGAG
AGTTATGCCACAAAT
Found at i:32469214 original size:283 final size:283
Alignment explanation
Indices: 32468707--32469270 Score: 1101
Period size: 283 Copynumber: 2.0 Consensus size: 283
32468697 CCAATTTATA
*
32468707 AGAGCTTTGCTCCCAATACATTTCATCCTTCTCGATCTCAAGATTTAACAAAACCTTTGTATCAA
1 AGAGCTTTGCTCCCAATACATTTCATCCTTCTCGATCTCAAGATTCAACAAAACCTTTGTATCAA
32468772 TAAACTCTGCAAGATTCTCATCATCTATCTCTTTTTGCATCAACACTTCCAATTTATTTGTCAAA
66 TAAACTCTGCAAGATTCTCATCATCTATCTCTTTTTGCATCAACACTTCCAATTTATTTGTCAAA
32468837 TTCTTCTTGAGACCCTTCTTATTTCTTTTGACTCACCCAACCCATTTCTCCAAACCATTTTTAAG
131 TTCTTCTTGAGACCCTTCTTATTTCTTTTGACTCACCCAACCCATTTCTCCAAACCATTTTTAAG
32468902 GTTTTCAATTTGATCAATAAGTTTCCTGTTGAAGCCATCCATATATTCTTCATCACTTTTGTGAA
196 GTTTTCAATTTGATCAATAAGTTTCCTGTTGAAGCCATCCATATATTCTTCATCACTTTTGTGAA
32468967 AGATTCTTCCAAAACCCATTACG
261 AGATTCTTCCAAAACCCATTACG
*
32468990 AGAGCTTTGTTCCCAATACATTTCATCCTTCTCGATCTCAAGATTCAACAAAACCTTTGTATCAA
1 AGAGCTTTGCTCCCAATACATTTCATCCTTCTCGATCTCAAGATTCAACAAAACCTTTGTATCAA
*
32469055 TAAACTCTGCAAGATTCTCATCATCTATCTCTTTTTGCATCAACACTTCTAATTTATTTGTCAAA
66 TAAACTCTGCAAGATTCTCATCATCTATCTCTTTTTGCATCAACACTTCCAATTTATTTGTCAAA
32469120 TTCTTCTTGAGACCCTTCTTATTTCTTTTGACTCACCCAACCCATTTCTCCAAACCATTTTTAAG
131 TTCTTCTTGAGACCCTTCTTATTTCTTTTGACTCACCCAACCCATTTCTCCAAACCATTTTTAAG
32469185 GTTTTCAATTTGATCAATAAGTTTCCTGTTGAAGCCATCCATATATTCTTCATCACTTTTGTGAA
196 GTTTTCAATTTGATCAATAAGTTTCCTGTTGAAGCCATCCATATATTCTTCATCACTTTTGTGAA
32469250 AGATTCTTCCAAAACCCATTA
261 AGATTCTTCCAAAACCCATTA
32469271 TGCCTCAAAG
Statistics
Matches: 278, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
283 278 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (283 bp):
AGAGCTTTGCTCCCAATACATTTCATCCTTCTCGATCTCAAGATTCAACAAAACCTTTGTATCAA
TAAACTCTGCAAGATTCTCATCATCTATCTCTTTTTGCATCAACACTTCCAATTTATTTGTCAAA
TTCTTCTTGAGACCCTTCTTATTTCTTTTGACTCACCCAACCCATTTCTCCAAACCATTTTTAAG
GTTTTCAATTTGATCAATAAGTTTCCTGTTGAAGCCATCCATATATTCTTCATCACTTTTGTGAA
AGATTCTTCCAAAACCCATTACG
Found at i:32470676 original size:37 final size:37
Alignment explanation
Indices: 32470635--32470706 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
32470625 ATACGTAAAT
32470635 AATTTCACAAGCCCTATCCTAAATTAGTGCTATCAAA
1 AATTTCACAAGCCCTATCCTAAATTAGTGCTATCAAA
32470672 AATTTCACAAGCCCTATCCTAAATTAGTGCTATCA
1 AATTTCACAAGCCCTATCCTAAATTAGTGCTATCA
32470707 TACTCCAGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.31
Consensus pattern (37 bp):
AATTTCACAAGCCCTATCCTAAATTAGTGCTATCAAA
Found at i:32470695 original size:21 final size:21
Alignment explanation
Indices: 32470635--32470696 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
32470625 ATACGTAAAT
32470635 AATTTCACAAGCCCTATCCTA
1 AATTTCACAAGCCCTATCCTA
** **
32470656 AA-TT----AGTGCTATCAAA
1 AATTTCACAAGCCCTATCCTA
32470672 AATTTCACAAGCCCTATCCTA
1 AATTTCACAAGCCCTATCCTA
32470693 AATT
1 AATT
32470697 AGTGCTATCA
Statistics
Matches: 28, Mismatches: 8, Indels: 10
0.61 0.17 0.22
Matches are distributed among these distances:
16 10 0.36
17 2 0.07
20 2 0.07
21 14 0.50
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (21 bp):
AATTTCACAAGCCCTATCCTA
Found at i:32473870 original size:17 final size:17
Alignment explanation
Indices: 32473848--32473883 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32473838 AAGTTAAATA
32473848 AATATTAAAATATTTTT
1 AATATTAAAATATTTTT
* *
32473865 AATATTTAATTATTTTT
1 AATATTAAAATATTTTT
32473882 AA
1 AA
32473884 ATAGTATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATATTAAAATATTTTT
Found at i:32475219 original size:3 final size:3
Alignment explanation
Indices: 32475213--32475243 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
32475203 CTTTTTACGA
*
32475213 ATT ATT ATT ATT ATT ATT ATT ATT TTT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
32475244 CTTTTCTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:32480333 original size:5 final size:5
Alignment explanation
Indices: 32480325--32480366 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
32480315 AAGTGAGTGA
32480325 AAAAG AAAAG AAAA- AGAAAG -AAAG -AAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG A-AAAG AAAAG AAAAG AAAAG AAAAG AAAA
32480367 TACTCATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 9 0.26
5 25 0.74
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:32481356 original size:49 final size:49
Alignment explanation
Indices: 32481269--32481368 Score: 139
Period size: 49 Copynumber: 2.0 Consensus size: 49
32481259 AGTCTCGAAG
*** *
32481269 CATCAAACTTAGAAGCCAAAGTACCTTGAAAATGAAGGCAATGTTGCAA
1 CATCAAACTTAGAAGCCAAAGTACCAAAAAAATGAAGGCAATGTTACAA
*
32481318 CATCAAACTTAGAAGCCAAAGTACCCAAAAAAAT-AAGGCAGTGTTACAA
1 CATCAAACTTAGAAGCCAAAGTA-CCAAAAAAATGAAGGCAATGTTACAA
32481367 CA
1 CA
32481369 CCAATCTTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
49 38 0.84
50 7 0.16
ACGTcount: A:0.46, C:0.20, G:0.16, T:0.18
Consensus pattern (49 bp):
CATCAAACTTAGAAGCCAAAGTACCAAAAAAATGAAGGCAATGTTACAA
Found at i:32483152 original size:27 final size:27
Alignment explanation
Indices: 32483122--32483201 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
32483112 TGTAAACACG
* *
32483122 CTATAAAATGGAAGCCTTTGTGGCAAT
1 CTATGAAATGGAAGCCTTTGTGGCAAC
* *
32483149 CTATGAAGTGGAAACCTTTGTGGCAAC
1 CTATGAAATGGAAGCCTTTGTGGCAAC
*
32483176 CTATGATATGTG-AGCCTTTGTGGCAA
1 CTATGAAATG-GAAGCCTTTGTGGCAA
32483202 ATGATGAAAG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 44 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (27 bp):
CTATGAAATGGAAGCCTTTGTGGCAAC
Found at i:32486042 original size:33 final size:34
Alignment explanation
Indices: 32485972--32486042 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 34
32485962 AAAAAAATAA
* *
32485972 AAAAATATATAAAAATTTCAAAAATTATATTTTT
1 AAAAATATATAAAAATTTCAAAAATTATATATAT
* *
32486006 AAAAAT-TAT-AAAATTTCTAATATATATATATAT
1 AAAAATATATAAAAATTTCAAAAAT-TATATATAT
32486039 AAAA
1 AAAA
32486043 GTTAAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 12 0.38
33 14 0.44
34 6 0.19
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (34 bp):
AAAAATATATAAAAATTTCAAAAATTATATATAT
Found at i:32497194 original size:7 final size:6
Alignment explanation
Indices: 32497178--32497229 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
32497168 TAATTTTGAA
** *
32497178 ATTTTT ATTTTT CATTTTT ATTGCT ATTTTT AATTTT ATTTGTTT ATTTTT
1 ATTTTT ATTTTT -ATTTTT ATTTTT ATTTTT ATTTTT A-TT-TTT ATTTTT
32497229 A
1 A
32497230 ATAAAGGGGG
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
6 24 0.65
7 9 0.24
8 4 0.11
ACGTcount: A:0.19, C:0.04, G:0.04, T:0.73
Consensus pattern (6 bp):
ATTTTT
Found at i:32499827 original size:13 final size:13
Alignment explanation
Indices: 32499806--32499838 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
32499796 CTCATGCTTT
32499806 AAAAAAAAGAG-A
1 AAAAAAAAGAGCA
32499818 AAAAAGAAAGAGCA
1 AAAAA-AAAGAGCA
32499832 AAAAAAA
1 AAAAAAA
32499839 GTTTGCTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.26
13 8 0.42
14 6 0.32
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGAGCA
Found at i:32500747 original size:25 final size:25
Alignment explanation
Indices: 32500719--32500773 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
32500709 TTATTTCATT
32500719 AAATTGGGTTGATTAAAATGTTATA
1 AAATTGGGTTGATTAAAATGTTATA
*
32500744 AAATTGGGTTGGTTAAAATGTTATA
1 AAATTGGGTTGATTAAAATGTTATA
32500769 AAATT
1 AAATT
32500774 AAGTTAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (25 bp):
AAATTGGGTTGATTAAAATGTTATA
Found at i:32500784 original size:25 final size:25
Alignment explanation
Indices: 32500730--32500785 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
32500720 AATTGGGTTG
** *
32500730 ATTAAAATGTTATAAAATTGGGTTG
1 ATTAAAATGTTATAAAATTAAGTTA
*
32500755 GTTAAAATGTTATAAAATTAAGTTA
1 ATTAAAATGTTATAAAATTAAGTTA
32500780 ATTAAA
1 ATTAAA
32500786 TTAATTAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.39
Consensus pattern (25 bp):
ATTAAAATGTTATAAAATTAAGTTA
Found at i:32504668 original size:48 final size:46
Alignment explanation
Indices: 32504612--32504760 Score: 140
Period size: 46 Copynumber: 3.2 Consensus size: 46
32504602 GAACATTAGC
* *
32504612 GTGCTCTCTGTTTAGCACGTCT-CATGCTCTTTGTTATTAGCACTTTGT
1 GTGCTCTCTGATTAGCAC-TCTGCATGCTCTCTG--ATTAGCACTTTGT
* ** *
32504660 GTGCTCTCTGATTAGCACTTTGTGTGCTCTCTGATTAGTACTTTGT
1 GTGCTCTCTGATTAGCACTCTGCATGCTCTCTGATTAGCACTTTGT
* * ** * *
32504706 GTGCTCTCTGATTAGTACTTTGTGTACTCTCTGCTTAGCACTTTG-
1 GTGCTCTCTGATTAGCACTCTGCATGCTCTCTGATTAGCACTTTGT
*
32504751 CTGCTCTCTG
1 GTGCTCTCTG
32504761 TTGCCCAGCA
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
45 9 0.10
46 53 0.60
47 2 0.02
48 25 0.28
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.45
Consensus pattern (46 bp):
GTGCTCTCTGATTAGCACTCTGCATGCTCTCTGATTAGCACTTTGT
Found at i:32504677 original size:23 final size:23
Alignment explanation
Indices: 32504647--32504760 Score: 176
Period size: 23 Copynumber: 5.0 Consensus size: 23
32504637 GCTCTTTGTT
32504647 ATTAGCACTTTGTGTGCTCTCTG
1 ATTAGCACTTTGTGTGCTCTCTG
32504670 ATTAGCACTTTGTGTGCTCTCTG
1 ATTAGCACTTTGTGTGCTCTCTG
*
32504693 ATTAGTACTTTGTGTGCTCTCTG
1 ATTAGCACTTTGTGTGCTCTCTG
* *
32504716 ATTAGTACTTTGTGTACTCTCTG
1 ATTAGCACTTTGTGTGCTCTCTG
* *
32504739 CTTAGCACTTTG-CTGCTCTCTG
1 ATTAGCACTTTGTGTGCTCTCTG
32504761 TTGCCCAGCA
Statistics
Matches: 85, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
22 8 0.09
23 77 0.91
ACGTcount: A:0.13, C:0.22, G:0.20, T:0.45
Consensus pattern (23 bp):
ATTAGCACTTTGTGTGCTCTCTG
Found at i:32504790 original size:69 final size:69
Alignment explanation
Indices: 32504647--32504805 Score: 184
Period size: 69 Copynumber: 2.3 Consensus size: 69
32504637 GCTCTTTGTT
* * * * *
32504647 ATTAGCACTTTGTGTGCTCTCTGATTAGCACTTTGTGTGCTCTCTGATTAGTACTTTGTGTGCTC
1 ATTAGTACTTTGTGTACTCTCTGATTAGCACTTTGTCTGCTCTCTGATTAGCACTTTATGTGCTC
32504712 TCTG
66 TCTG
*
32504716 ATTAGTACTTTGTGTACTCTCTGCTTAGCACTTTG-CTGCTCTCTG-TTGCCCAGCAC-TTATGT
1 ATTAGTACTTTGTGTACTCTCTGATTAGCACTTTGTCTGCTCTCTGATT----AGCACTTTATGT
32504778 GCTCTCTG
62 GCTCTCTG
*
32504786 -TTAGTACTTTG-ATACTCTCT
1 ATTAGTACTTTGTGTACTCTCT
32504806 ATTTGTTCTG
Statistics
Matches: 79, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
67 2 0.03
68 17 0.22
69 43 0.54
70 13 0.16
71 4 0.05
ACGTcount: A:0.14, C:0.23, G:0.19, T:0.44
Consensus pattern (69 bp):
ATTAGTACTTTGTGTACTCTCTGATTAGCACTTTGTCTGCTCTCTGATTAGCACTTTATGTGCTC
TCTG
Found at i:32504795 original size:46 final size:43
Alignment explanation
Indices: 32504647--32504805 Score: 133
Period size: 46 Copynumber: 3.5 Consensus size: 43
32504637 GCTCTTTGTT
* *
32504647 ATTAGCACTTTGTGTGCTCTCTGATTAGCACTTTGTGTGCTCTCTG
1 ATTAGTACTTTG-ATGCTCTCTGATTAGCAC-TT-TGTGCTCTCTG
* *
32504693 ATTAGTACTTTGTGTGCTCTCTGATTAGTACTTTGTGTACTCTCTG
1 ATTAGTACTTTG-ATGCTCTCTGATTAGCACTTTGTG--CTCTCTG
* * *
32504739 CTTAGCACTTTGCTGCTCTCTG-TTGCCCAGCACTTATGTGCTCTCTG
1 ATTAGTACTTTGATGCTCTCTGATT----AGCACTT-TGTGCTCTCTG
*
32504786 -TTAGTACTTTGATACTCTCT
1 ATTAGTACTTTGATGCTCTCT
32504806 ATTTGTTCTG
Statistics
Matches: 97, Mismatches: 9, Indels: 14
0.81 0.08 0.12
Matches are distributed among these distances:
44 6 0.06
45 11 0.11
46 63 0.65
47 7 0.07
48 6 0.06
49 4 0.04
ACGTcount: A:0.14, C:0.23, G:0.19, T:0.44
Consensus pattern (43 bp):
ATTAGTACTTTGATGCTCTCTGATTAGCACTTTGTGCTCTCTG
Found at i:32511877 original size:23 final size:23
Alignment explanation
Indices: 32511847--32511973 Score: 112
Period size: 23 Copynumber: 5.4 Consensus size: 23
32511837 ACATTAGCGC
32511847 GCTCTCTGTTTAGCACGTC-TCGT
1 GCTCTCTGTTTAGCACGTCGT-GT
*
32511870 GCTCTCTGTTATTAGCACTTCGTGT
1 GCTCTCTG-T-TTAGCACGTCGTGT
* * *
32511895 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACGTCGTGT
* * * *
32511918 GCTCTCTGATTAGTACTTTGTGT
1 GCTCTCTGTTTAGCACGTCGTGT
* * *
32511941 GCTCTCTGCTTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACGTCGTGT
*
32511964 GCTCTTTGTT
1 GCTCTCTGTT
32511974 GCCCAGCACT
Statistics
Matches: 93, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
23 72 0.77
24 1 0.01
25 19 0.20
26 1 0.01
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (23 bp):
GCTCTCTGTTTAGCACGTCGTGT
Found at i:32511947 original size:46 final size:47
Alignment explanation
Indices: 32511868--32512018 Score: 159
Period size: 46 Copynumber: 3.2 Consensus size: 47
32511858 AGCACGTCTC
32511868 GTGCTCTCTGTTATTAGCACTTCGTGTGCTCTCTGATTAGCACTTTGT
1 GTGCTCTCTG-TATTAGCACTTCGTGTGCTCTCTGATTAGCACTTTGT
* * *
32511916 GTGCTCTCTG-ATTAGTACTTTGTGTGCTCTCTGCTTAGCACTTTGT
1 GTGCTCTCTGTATTAGCACTTCGTGTGCTCTCTGATTAGCACTTTGT
* * * *
32511962 GTGCTCTTTGT-TGCCCAGCACTT-ATGTGCTCTCTG-TTAGTACTTTG-
1 GTGCTCTCTGTAT---TAGCACTTCGTGTGCTCTCTGATTAGCACTTTGT
*
32512008 GTACTCTCTGT
1 GTGCTCTCTGT
32512019 TTGTTCCGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
46 52 0.58
47 10 0.11
48 21 0.24
49 6 0.07
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.44
Consensus pattern (47 bp):
GTGCTCTCTGTATTAGCACTTCGTGTGCTCTCTGATTAGCACTTTGT
Found at i:32511968 original size:69 final size:66
Alignment explanation
Indices: 32511881--32512017 Score: 168
Period size: 69 Copynumber: 2.0 Consensus size: 66
32511871 CTCTCTGTTA
* *
32511881 TTAGCACTTCGTGTGCTCTCTGATT-AGCACTTTGTGTGCTCTCTGATTAGTACTTTGTGTGCTC
1 TTAGCACTTCGTGTGCTCTCTG-TTCAGCAC-TTATGTGCTCTCTG-TTAGTACTTTG-GTACTC
32511945 TCTGC
62 TCTGC
* *
32511950 TTAGCACTTTGTGTGCTCTTTGTTGCCCAGCACTTATGTGCTCTCTGTTAGTACTTTGGTACTCT
1 TTAGCACTTCGTGTGCTCTCTGTT---CAGCACTTATGTGCTCTCTGTTAGTACTTTGGTACTCT
32512015 CTG
63 CTG
32512018 TTTGTTCCGT
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
68 2 0.03
69 29 0.48
70 11 0.18
71 13 0.22
72 5 0.08
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (66 bp):
TTAGCACTTCGTGTGCTCTCTGTTCAGCACTTATGTGCTCTCTGTTAGTACTTTGGTACTCTCTG
C
Found at i:32521189 original size:23 final size:22
Alignment explanation
Indices: 32521159--32521225 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 22
32521149 ATGCAATCCT
32521159 AGATATGATATGTAAATCTTAGA
1 AGATATGAT-TGTAAATCTTAGA
32521182 AGATATGATCCT-TATAATCTTAG-
1 AGATATGAT--TGTA-AATCTTAGA
*
32521205 AGATTTGATTGT-AATCTTAGA
1 AGATATGATTGTAAATCTTAGA
32521226 GATTCATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 8 0.21
21 1 0.03
22 1 0.03
23 19 0.50
24 9 0.24
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATTGTAAATCTTAGA
Found at i:32523926 original size:21 final size:22
Alignment explanation
Indices: 32523891--32523931 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
32523881 GTACTTAGAT
32523891 GTTTGAGTTGTGGAAAGTTTTA
1 GTTTGAGTTGTGGAAAGTTTTA
* *
32523913 GTTTG-GTTTTGGAATGTTT
1 GTTTGAGTTGTGGAAAGTTT
32523932 AAATGCCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (22 bp):
GTTTGAGTTGTGGAAAGTTTTA
Found at i:32524552 original size:14 final size:14
Alignment explanation
Indices: 32524533--32524565 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
32524523 TTTATTAAAG
*
32524533 TAATTGATTTTTTA
1 TAATTGATTATTTA
32524547 TAATTGATTATTTA
1 TAATTGATTATTTA
32524561 TAATT
1 TAATT
32524566 TTTCTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (14 bp):
TAATTGATTATTTA
Found at i:32528192 original size:6 final size:6
Alignment explanation
Indices: 32528181--32528223 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
32528171 TTTGTGATCA
* * *
32528181 AAAGTG AAAGTG AAAGTG AAAGTG AAATTG GAATTG AAAGTG A
1 AAAGTG AAAGTG AAAGTG AAAGTG AAAGTG AAAGTG AAAGTG A
32528224 TATGAATTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.30, T:0.21
Consensus pattern (6 bp):
AAAGTG
Found at i:32528232 original size:16 final size:18
Alignment explanation
Indices: 32528181--32528235 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 18
32528171 TTTGTGATCA
* * *
32528181 AAAGTGAAAGTGAAAGTG
1 AAAGTGAAATTGGAATTG
32528199 AAAGTGAAATTGGAATTG
1 AAAGTGAAATTGGAATTG
*
32528217 AAAGTGATA-T-GAATTG
1 AAAGTGAAATTGGAATTG
32528233 AAA
1 AAA
32528236 TTTGAAAATC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
16 9 0.27
17 1 0.03
18 23 0.70
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (18 bp):
AAAGTGAAATTGGAATTG
Found at i:32530242 original size:30 final size:31
Alignment explanation
Indices: 32530202--32530268 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
32530192 TAGATTATAG
* *
32530202 GTTATG-ATATGTAAATTTGAATG-TTACAT
1 GTTATGAATATGTAAATATAAATGATTACAT
*
32530231 GTTATGAATATGTGAATATAAATGATTACAT
1 GTTATGAATATGTAAATATAAATGATTACAT
*
32530262 GGTATGA
1 GTTATGA
32530269 TAATGAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 6 0.19
30 14 0.44
31 12 0.38
ACGTcount: A:0.37, C:0.03, G:0.19, T:0.40
Consensus pattern (31 bp):
GTTATGAATATGTAAATATAAATGATTACAT
Found at i:32532478 original size:19 final size:19
Alignment explanation
Indices: 32532453--32532510 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 19
32532443 TTATAATTTT
*
32532453 AAACCCTAAATCCTAAATC
1 AAACCCTAAATCCAAAATC
* * *
32532472 AATCCCTAAACCCCAAATC
1 AAACCCTAAATCCAAAATC
32532491 AAACCCTAAATCCAAAATC
1 AAACCCTAAATCCAAAATC
32532510 A
1 A
32532511 TTGATCCCTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.48, C:0.34, G:0.00, T:0.17
Consensus pattern (19 bp):
AAACCCTAAATCCAAAATC
Found at i:32532858 original size:26 final size:26
Alignment explanation
Indices: 32532822--32532875 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
32532812 CCACAATAAT
32532822 ATATTAGGATGACATGTGCTTGATCC
1 ATATTAGGATGACATGTGCTTGATCC
32532848 ATATTAGGATGACATGTGCTTGATCC
1 ATATTAGGATGACATGTGCTTGATCC
32532874 AT
1 AT
32532876 TTCTTCCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (26 bp):
ATATTAGGATGACATGTGCTTGATCC
Found at i:32533375 original size:6 final size:6
Alignment explanation
Indices: 32533364--32533399 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
32533354 TTAAATTATG
32533364 TAGAAT TAGAAT TAGAAT TAGAAT TAGAAT TA-AAT T
1 TAGAAT TAGAAT TAGAAT TAGAAT TAGAAT TAGAAT T
32533400 GATATAATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (6 bp):
TAGAAT
Found at i:32533889 original size:17 final size:18
Alignment explanation
Indices: 32533853--32533890 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
32533843 AAGTTTTAAC
*
32533853 TTTTAATCAAAAATTCTT
1 TTTTAATCAAAAATTATT
*
32533871 TTTTATTCAAAAA-TATT
1 TTTTAATCAAAAATTATT
32533888 TTT
1 TTT
32533891 AAAAAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (18 bp):
TTTTAATCAAAAATTATT
Found at i:32535387 original size:61 final size:61
Alignment explanation
Indices: 32535315--32535439 Score: 232
Period size: 61 Copynumber: 2.0 Consensus size: 61
32535305 TACTGTCCAG
*
32535315 CATCATTGTGGTTATAAACTGAAAAGTATAAAATAAAATTATAAAACAGTTCTAGTTCTAT
1 CATCATCGTGGTTATAAACTGAAAAGTATAAAATAAAATTATAAAACAGTTCTAGTTCTAT
*
32535376 CATCATCGTGGTTATAAACTGAAAAGTATAAAATAAAATTATAGAACAGTTCTAGTTCTAT
1 CATCATCGTGGTTATAAACTGAAAAGTATAAAATAAAATTATAAAACAGTTCTAGTTCTAT
32535437 CAT
1 CAT
32535440 TAACTCTTAA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (61 bp):
CATCATCGTGGTTATAAACTGAAAAGTATAAAATAAAATTATAAAACAGTTCTAGTTCTAT
Found at i:32541814 original size:33 final size:30
Alignment explanation
Indices: 32541779--32541883 Score: 101
Period size: 33 Copynumber: 3.4 Consensus size: 30
32541769 ATTAATTTAT
32541779 ATTTTATATATGATTATATTTAATTATCTAAA
1 ATTTTATATAT-ATTATATTTAATTAT-TAAA
* *
32541811 TATTTTATGTACTATTATA-TTAATTTATTTAA
1 -ATTTTATATA-TATTATATTTAA-TTATTAAA
*
32541843 ATTTTAT-T-TATTATATTTAATTTTTTAAA
1 ATTTTATATATATTATATTTAA-TTATTAAA
32541872 ATTTT-TATATAT
1 ATTTTATATATAT
32541884 GATAAATTTT
Statistics
Matches: 63, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
28 8 0.13
29 17 0.27
30 4 0.06
31 7 0.11
32 7 0.11
33 19 0.30
34 1 0.02
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (30 bp):
ATTTTATATATATTATATTTAATTATTAAA
Found at i:32541865 original size:14 final size:14
Alignment explanation
Indices: 32541823--32541865 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
32541813 TTTTATGTAC
32541823 TATTATA-TTAATT
1 TATTATATTTAATT
* *
32541836 TATTTAAATTTTATT
1 TA-TTATATTTAATT
32541851 TATTATATTTAATT
1 TATTATATTTAATT
32541865 T
1 T
32541866 TTTAAAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 2 0.08
14 15 0.62
15 7 0.29
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TATTATATTTAATT
Found at i:32542477 original size:14 final size:14
Alignment explanation
Indices: 32542454--32542487 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32542444 TATCATTTTG
*
32542454 CTATTATATTGTTA
1 CTATTTTATTGTTA
32542468 CTATTTTATTGTTA
1 CTATTTTATTGTTA
*
32542482 TTATTT
1 CTATTT
32542488 GAATATTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (14 bp):
CTATTTTATTGTTA
Found at i:32545086 original size:13 final size:14
Alignment explanation
Indices: 32545068--32545099 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
32545058 CCTGAACCAT
32545068 GAACCCCTAACC-C
1 GAACCCCTAACCTC
32545081 GAA-CCCTAACCTC
1 GAACCCCTAACCTC
32545094 GAACCC
1 GAACCC
32545100 TAAACTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 8 0.47
13 7 0.41
14 2 0.12
ACGTcount: A:0.31, C:0.50, G:0.09, T:0.09
Consensus pattern (14 bp):
GAACCCCTAACCTC
Found at i:32545089 original size:12 final size:13
Alignment explanation
Indices: 32545072--32545102 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
32545062 AACCATGAAC
32545072 CCCTAACC-CGAA
1 CCCTAACCTCGAA
32545084 CCCTAACCTCGAA
1 CCCTAACCTCGAA
32545097 CCCTAA
1 CCCTAA
32545103 ACTTCAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.32, C:0.48, G:0.06, T:0.13
Consensus pattern (13 bp):
CCCTAACCTCGAA
Found at i:32545153 original size:19 final size:20
Alignment explanation
Indices: 32545131--32545173 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
32545121 CTAATTTAGA
32545131 TTTAAGGTT-AGAGTTT-GGG
1 TTTAAGGTTCA-AGTTTGGGG
*
32545150 TTTAGGGTTCAAGTTTGGGG
1 TTTAAGGTTCAAGTTTGGGG
32545170 TTTA
1 TTTA
32545174 GGATTTGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.19, C:0.02, G:0.35, T:0.44
Consensus pattern (20 bp):
TTTAAGGTTCAAGTTTGGGG
Found at i:32545558 original size:49 final size:47
Alignment explanation
Indices: 32545449--32545561 Score: 111
Period size: 49 Copynumber: 2.3 Consensus size: 47
32545439 TTTAATTAAT
* *
32545449 TTTTAAATTTTAAAATATTAAAAAAATTCTTTATAATTTTTAAAATA
1 TTTTAAGTTTTAAAATATTAAAAAAATTCTTTATAATTTTTAAAAGA
** * * *
32545496 AATTAATGATTTTAAATTTTTAAAAATAGTT-TTTATAATTTTTATTAAAGA
1 TTTTAA-G-TTTTAAAATATTAAAAA-AATTCTTTATAATTTTTA--AAAGA
32545547 TTTTAAGTTTTAAAA
1 TTTTAAGTTTTAAAA
32545562 AAATTAATTA
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
47 4 0.08
49 35 0.69
50 4 0.08
51 8 0.16
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.50
Consensus pattern (47 bp):
TTTTAAGTTTTAAAATATTAAAAAAATTCTTTATAATTTTTAAAAGA
Found at i:32554317 original size:29 final size:30
Alignment explanation
Indices: 32554285--32554355 Score: 90
Period size: 31 Copynumber: 2.4 Consensus size: 30
32554275 AAATCATAAT
* *
32554285 TTCATATATAAAATTGCACA-AAACCAAAG
1 TTCATGTATAAAATTACACATAAACCAAAG
* *
32554314 TTCATGTATACAATTACACATTAAACCATAG
1 TTCATGTATAAAATTACACA-TAAACCAAAG
32554345 TTCATGTATAA
1 TTCATGTATAA
32554356 TTTTGGGATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 17 0.49
31 18 0.51
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.31
Consensus pattern (30 bp):
TTCATGTATAAAATTACACATAAACCAAAG
Found at i:32556652 original size:20 final size:20
Alignment explanation
Indices: 32556605--32556666 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
32556595 TATGAATATT
*
32556605 ATATGTATATGGTATGAATATG
1 ATATGTATATGATATG--TATG
*
32556627 ACATGTATATGATATGTATG
1 ATATGTATATGATATGTATG
* *
32556647 ATATGTACATGATGTGTATG
1 ATATGTATATGATATGTATG
32556667 TGTTTAAGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 21 0.60
22 14 0.40
ACGTcount: A:0.34, C:0.03, G:0.23, T:0.40
Consensus pattern (20 bp):
ATATGTATATGATATGTATG
Found at i:32556658 original size:11 final size:11
Alignment explanation
Indices: 32556595--32556665 Score: 65
Period size: 11 Copynumber: 6.6 Consensus size: 11
32556585 ATCATTTGCT
* *
32556595 TATGAATATTA
1 TATGTATATGA
*
32556606 TATGTATATGG
1 TATGTATATGA
*
32556617 TATGAATATGA
1 TATGTATATGA
*
32556628 CATGTATATGA
1 TATGTATATGA
32556639 TATG--TATGA
1 TATGTATATGA
*
32556648 TATGTACATGA
1 TATGTATATGA
*
32556659 TGTGTAT
1 TATGTAT
32556666 GTGTTTAAGG
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
9 9 0.19
11 38 0.81
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (11 bp):
TATGTATATGA
Found at i:32559376 original size:43 final size:43
Alignment explanation
Indices: 32559281--32559635 Score: 381
Period size: 43 Copynumber: 8.3 Consensus size: 43
32559271 TTATTAAAAA
* *
32559281 AAACGCCGCTATAGAACATGGTCTTTAGCGGCGC-TTCCCCAT
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCCAC
* * * *
32559323 AGACGCTGCTAAAAAACATGGTCTTTAGCGGCGCTTTCCCCAT
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCCAC
** * * *
32559366 AAACGTTGCTAAAGAACATGGTCTTTAACGGTGCTTTCCCCAA
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCCAC
* *
32559409 AAACACCGCTAAAGAACATGGTCTTTAGCGGCGCTTTACCCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCCAC
* * * * *
32559452 AAACGCCGCTAAAAAAAATGGTTTTTAGCGGCGCTTTCTCCGC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCCAC
* * * * * ***
32559495 AAATGCCACCAAAGAACATGGTATTTAGCGGCGCTTTTCCTGT
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCCAC
* * * * * *
32559538 AAATGCCACTAAAGAACATGATCTTTAGCGACGCTTCCCCCAA
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCCAC
* *
32559581 AAACGCCGCTAAA-AACATTGTCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCCAC
*
32559623 AAACGCCACTAAA
1 AAACGCCGCTAAA
32559636 ATTAACATAT
Statistics
Matches: 260, Mismatches: 52, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
42 65 0.25
43 195 0.75
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCCAC
Found at i:32565729 original size:8 final size:8
Alignment explanation
Indices: 32565694--32565862 Score: 59
Period size: 8 Copynumber: 20.6 Consensus size: 8
32565684 ACATAGTTGC
32565694 AAATAATT
1 AAATAATT
*
32565702 AACTAATT
1 AAATAATT
**
32565710 AAATAACC
1 AAATAATT
32565718 AAATAATT
1 AAATAATT
*
32565726 AAATATTT
1 AAATAATT
*** *
32565734 GGGTTATTTT
1 -AAATA-ATT
* *
32565744 TAATAAAT
1 AAATAATT
*
32565752 AACTAATT
1 AAATAATT
*
32565760 GAATAATT
1 AAATAATT
32565768 AAATAATT
1 AAATAATT
*
32565776 AAATATTT
1 AAATAATT
*** *
32565784 GGGTTATTTT
1 -AAATA-ATT
* *
32565794 TAATAAAT
1 AAATAATT
*
32565802 AACTAATT
1 AAATAATT
*
32565810 GAATAATT
1 AAATAATT
*
32565818 AAATATTT
1 AAATAATT
* **
32565826 GAATTTTT
1 AAATAATT
*
32565834 TAATAATT
1 AAATAATT
*
32565842 AACTAATT
1 AAATAATT
32565850 AAATAATT
1 AAATAATT
32565858 AAATA
1 AAATA
32565863 TTTGGGTTTA
Statistics
Matches: 112, Mismatches: 45, Indels: 8
0.68 0.27 0.05
Matches are distributed among these distances:
8 98 0.88
9 8 0.07
10 6 0.05
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.42
Consensus pattern (8 bp):
AAATAATT
Found at i:32565772 original size:50 final size:50
Alignment explanation
Indices: 32565695--32565822 Score: 220
Period size: 50 Copynumber: 2.6 Consensus size: 50
32565685 CATAGTTGCA
* * **
32565695 AATAATTAACTAATTAAATAACCAAATAATTAAATATTTGGGTTATTTTT
1 AATAAATAACTAATTGAATAATTAAATAATTAAATATTTGGGTTATTTTT
32565745 AATAAATAACTAATTGAATAATTAAATAATTAAATATTTGGGTTATTTTT
1 AATAAATAACTAATTGAATAATTAAATAATTAAATATTTGGGTTATTTTT
32565795 AATAAATAACTAATTGAATAATTAAATA
1 AATAAATAACTAATTGAATAATTAAATA
32565823 TTTGAATTTT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.41
Consensus pattern (50 bp):
AATAAATAACTAATTGAATAATTAAATAATTAAATATTTGGGTTATTTTT
Found at i:32565888 original size:34 final size:34
Alignment explanation
Indices: 32565840--32565964 Score: 103
Period size: 34 Copynumber: 3.6 Consensus size: 34
32565830 TTTTTAATAA
*
32565840 TTAACTAATTAAATAATTAAATATTTGGGTTTATT
1 TTAA-TAATTAAATAATTAAATATTTGGGTTAATT
* * * *
32565875 TTAATAATTAAATATTTCTATTATTT---TTAATAA
1 TTAATAATTAAATAATT-AAATATTTGGGTTAAT-T
* * * *
32565908 ATAGCTAATTAAATAATTAAATATTTGGGCTGATT
1 TTA-ATAATTAAATAATTAAATATTTGGGTTAATT
*
32565943 TTATTAATTAAATAATTAAATA
1 TTAATAATTAAATAATTAAATA
32565965 ATTAAATATT
Statistics
Matches: 69, Mismatches: 15, Indels: 13
0.71 0.15 0.13
Matches are distributed among these distances:
32 4 0.06
33 8 0.12
34 42 0.61
35 12 0.17
36 3 0.04
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.47
Consensus pattern (34 bp):
TTAATAATTAAATAATTAAATATTTGGGTTAATT
Found at i:32565902 original size:26 final size:25
Alignment explanation
Indices: 32565851--32565907 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
32565841 TAACTAATTA
*
32565851 AATAATTAAATATTTGGGTTTATTTT
1 AATAATTAAATATTT-GCTTTATTTT
32565877 AATAATTAAATATTT-CTATTATTTTT
1 AATAATTAAATATTTGCT-TTA-TTTT
32565903 AATAA
1 AATAA
32565908 ATAGCTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 1 0.04
25 3 0.11
26 24 0.86
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (25 bp):
AATAATTAAATATTTGCTTTATTTT
Found at i:32565916 original size:68 final size:66
Alignment explanation
Indices: 32565811--32565956 Score: 211
Period size: 68 Copynumber: 2.2 Consensus size: 66
32565801 TAACTAATTG
* * *
32565811 AATAATTAAATATTTGAATTTTTTAATAATTAACTAATTAAATAATTAAATATTTGGGTTTATTT
1 AATAATTAAATATTTGAATTTTTTAATAAATAACTAATTAAATAATTAAATATTTGGGCTGATTT
32565876 T
66 T
* * *
32565877 AATAATTAAATATTTCTATTATTTTTAATAAATAGCTAATTAAATAATTAAATATTTGGGCTGAT
1 AATAATTAAATATTT-GAAT-TTTTTAATAAATAACTAATTAAATAATTAAATATTTGGGCTGAT
32565942 TTT
64 TTT
*
32565945 ATTAATTAAATA
1 AATAATTAAATA
32565957 ATTAAATAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
66 15 0.21
67 2 0.03
68 54 0.76
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (66 bp):
AATAATTAAATATTTGAATTTTTTAATAAATAACTAATTAAATAATTAAATATTTGGGCTGATTT
T
Found at i:32565923 original size:42 final size:40
Alignment explanation
Indices: 32565877--32566016 Score: 122
Period size: 42 Copynumber: 3.3 Consensus size: 40
32565867 GGTTTATTTT
32565877 AATAATTAAATATTTCTATTATTTTTAATAAATAGCTAATTA
1 AATAATTAAATATTTCTATTATTTTTAATAAATA--TAATTA
* *
32565919 AATAATTAAATATTTGGGCTGATT-TTATTAATTAA-ATAATTA
1 AATAATTAAATATTT---CT-ATTATTTTTAATAAATATAATTA
** * *
32565961 AATAATTAAATATTTGGATTACTTTTATTAAATATTTAATTAA
1 AATAATTAAATATTTCTATTATTTTTAATAAATA--TAATT-A
32566004 ATATAATTAAATA
1 A-ATAATTAAATA
32566017 ATTAAATATT
Statistics
Matches: 80, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
38 3 0.04
39 7 0.09
40 1 0.01
42 41 0.51
43 2 0.03
44 12 0.15
45 11 0.14
46 3 0.04
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (40 bp):
AATAATTAAATATTTCTATTATTTTTAATAAATATAATTA
Found at i:32565960 original size:8 final size:8
Alignment explanation
Indices: 32565947--32565972 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
32565937 CTGATTTTAT
32565947 TAATTAAA
1 TAATTAAA
32565955 TAATTAAA
1 TAATTAAA
32565963 TAATTAAA
1 TAATTAAA
32565971 TA
1 TA
32565973 TTTGGATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAATTAAA
Found at i:32566012 original size:22 final size:22
Alignment explanation
Indices: 32565987--32566047 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
32565977 GATTACTTTT
32565987 ATTAAATATTTAATTAAATATA
1 ATTAAATATTTAATTAAATATA
* * * *
32566009 ATTAAATAATTAAAT-ATTTTA
1 ATTAAATATTTAATTAAATATA
32566030 ACTTAAATATTTAATTAA
1 A-TTAAATATTTAATTAA
32566048 CTAATACTGT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
21 5 0.16
22 25 0.81
23 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
ATTAAATATTTAATTAAATATA
Found at i:32567280 original size:30 final size:29
Alignment explanation
Indices: 32567246--32567305 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
32567236 AAGGAATTCG
* * *
32567246 GGGATCAAAATTGAAATTTTTGGAAACTTT
1 GGGATCAAAATCG-AACTTTTGGAAAATTT
*
32567276 GGGATTAAAATCGAACTTTTGGAAAATTT
1 GGGATCAAAATCGAACTTTTGGAAAATTT
32567305 G
1 G
32567306 AAGTTAGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.35
Consensus pattern (29 bp):
GGGATCAAAATCGAACTTTTGGAAAATTT
Found at i:32567401 original size:29 final size:28
Alignment explanation
Indices: 32567335--32567403 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
32567325 TGGAAACTTG
* *
32567335 AGGGAAAAATAGTAATTTTTGGATGTTC
1 AGGGAAAAATGGTAATTTTTAGATGTTC
* * *
32567363 GGGGGTAAAATGGTAATTTTTAGATGTTT
1 -AGGGAAAAATGGTAATTTTTAGATGTTC
32567392 AGGGCAAAAATG
1 AGGG-AAAAATG
32567404 CAATTTTGGA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (28 bp):
AGGGAAAAATGGTAATTTTTAGATGTTC
Found at i:32567496 original size:30 final size:30
Alignment explanation
Indices: 32567396--32567693 Score: 164
Period size: 29 Copynumber: 10.2 Consensus size: 30
32567386 ATGTTTAGGG
* *
32567396 CAAAAATGCAATTTTGGAAAAGTTTA--GGT
1 CAAAAATGTAATTTTGG-AAAGTTCAGGGGT
* * *
32567425 C-AAAATGGTATTTTTGGAAAGTCCAAGGG-
1 CAAAAAT-GTAATTTTGGAAAGTTCAGGGGT
* *
32567454 AAAAAATATAATTTTGGAAAGTTCAGGGGT
1 CAAAAATGTAATTTTGGAAAGTTCAGGGGT
** *
32567484 CAAAACGGTAATTTTTGG-ATGTTC-GAGGG-
1 CAAAAATGTAA-TTTTGGAAAGTTCAG-GGGT
* *
32567513 CAAAAATGCAATTTTGGAAAAGTTTAGGGGT
1 CAAAAATGTAATTTTGG-AAAGTTCAGGGGT
* **
32567544 --AAAATGGAATTTTTGGAAAGTTTGGGGGT
1 CAAAAATGTAA-TTTTGGAAAGTTCAGGGGT
*
32567573 -AAAAATATAATTTTGG-AAGTTC-GAGGGT
1 CAAAAATGTAATTTTGGAAAGTTCAG-GGGT
* * *
32567601 CAAAACT-TGATTTTTAGAAAGTTC-GAGGGT
1 CAAAAATGT-AATTTTGGAAAGTTCAG-GGGT
*
32567631 -AAAAATGTAATTTT-GAGAAGTT-TGGGGT
1 CAAAAATGTAATTTTGGA-AAGTTCAGGGGT
* * *
32567659 -TAAAATGTAATTTTAGAGAAGTTTAGGGGT
1 CAAAAATGTAATTTTGGA-AAGTTCAGGGGT
32567689 CAAAA
1 CAAAA
32567694 TTTTTTTTGG
Statistics
Matches: 214, Mismatches: 32, Indels: 44
0.74 0.11 0.15
Matches are distributed among these distances:
27 1 0.00
28 46 0.21
29 97 0.45
30 60 0.28
31 10 0.05
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (30 bp):
CAAAAATGTAATTTTGGAAAGTTCAGGGGT
Found at i:32567531 original size:117 final size:114
Alignment explanation
Indices: 32567335--32567672 Score: 371
Period size: 117 Copynumber: 2.9 Consensus size: 114
32567325 TGGAAACTTG
* * * *
32567335 AGGGAAAAATAGTAATTTTTGGATGTTCGGGGGT-AAAATGGTAATTTTTAGATGTT-TAGGGCA
1 AGGGAAAAATA-TAA-TTTTGGAAGTTC-GGGGTCAAAACGGTAATTTTTGGATGTTCGAGGGCA
*
32567398 AAAATGCAATTTTGGAAAAGTTTA-GGTCAAAATGGTATTTTTGGAAAGTCCA
63 AAAATGCAATTTTGGAAAAGTTTAGGGT-AAAATGGAATTTTTGGAAAGTCCA
32567450 AGGGAAAAAATATAATTTTGGAAAGTTCAGGGGTCAAAACGGTAATTTTTGGATGTTCGAGGGCA
1 AGGG-AAAAATATAATTTTGG-AAGTTC-GGGGTCAAAACGGTAATTTTTGGATGTTCGAGGGCA
***
32567515 AAAATGCAATTTTGGAAAAGTTTAGGGGTAAAATGGAATTTTTGGAAAGTTTG
63 AAAATGCAATTTTGGAAAAGTTTA-GGGTAAAATGGAATTTTTGGAAAGTCCA
* * * * * *
32567568 GGGGTAAAAATATAATTTTGGAAGTTCGAGGGTCAAAAC-TTGATTTTTAGAAAGTTCGAGGGTA
1 AGGG-AAAAATATAATTTTGGAAGTTCG-GGGTCAAAACGGTAATTTTT-GGATGTTCGAGGGCA
* * * *
32567632 AAAATGTAATTTT-GAGAAGTTTGGGGTTAAAATGTAATTTT
63 AAAATGCAATTTTGGAAAAGTTTAGGG-TAAAATGGAATTTT
32567673 AGAGAAGTTT
Statistics
Matches: 194, Mismatches: 20, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
114 6 0.03
115 20 0.10
116 56 0.29
117 70 0.36
118 39 0.20
119 3 0.02
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.33
Consensus pattern (114 bp):
AGGGAAAAATATAATTTTGGAAGTTCGGGGTCAAAACGGTAATTTTTGGATGTTCGAGGGCAAAA
ATGCAATTTTGGAAAAGTTTAGGGTAAAATGGAATTTTTGGAAAGTCCA
Found at i:32567672 original size:58 final size:57
Alignment explanation
Indices: 32567308--32567681 Score: 237
Period size: 58 Copynumber: 6.4 Consensus size: 57
32567298 AAAATTTGAA
* * * * *
32567308 GTTAGAAATGTGATTTTTGGAAACTT-GAGGG-AAAAATAGTAATTTTTGGATGTTCGGG
1 GTTA-AAATGTAATTTTTAGAAAGTTCGAGGGCAAAAAT-GTAA-TTTTGGAAGTTTGGG
* * * * *
32567366 GGTAAAATGGTAATTTTTAG-ATGTT-TAGGGCAAAAATGCAATTTTGGAAAAGTTT-AG
1 GTTAAAAT-GTAATTTTTAGAAAGTTCGAGGGCAAAAATGTAATTTTGG--AAGTTTGGG
* * * * * * *
32567423 GTCAAAATGGT-ATTTTTGGAAAGTCCAAGGGAAAAAATATAATTTTGGAAAGTTCAGGG
1 GTTAAAAT-GTAATTTTTAGAAAGTTCGAGGGCAAAAATGTAATTTTGG-AAGTT-TGGG
* * * * *
32567482 GTCAAAACGGTAATTTTT-GGATGTTCGAGGGCAAAAATGCAATTTTGGAAAAGTTTAGGG
1 GTTAAAA-TGTAATTTTTAGAAAGTTCGAGGGCAAAAATGTAATTTTGG--AAGTTT-GGG
* * * * * * *
32567542 G-TAAAATGGAATTTTTGGAAAGTTTGGGGGTAAAAATATAATTTTGGAAGTTCGAGG
1 GTTAAAATGTAATTTTTAGAAAGTTCGAGGGCAAAAATGTAATTTTGGAAGTTTG-GG
* * *
32567599 GTCAAAACT-TGATTTTTAGAAAGTTCGAGGGTAAAAATGTAATTTTGAGAAGTTTGGG
1 GTTAAAA-TGTAATTTTTAGAAAGTTCGAGGGCAAAAATGTAATTTTG-GAAGTTTGGG
32567657 GTTAAAATGTAA-TTTTAGAGAAGTT
1 GTTAAAATGTAATTTTTAGA-AAGTT
32567682 TAGGGGTCAA
Statistics
Matches: 246, Mismatches: 51, Indels: 38
0.73 0.15 0.11
Matches are distributed among these distances:
56 14 0.06
57 49 0.20
58 99 0.40
59 68 0.28
60 16 0.07
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (57 bp):
GTTAAAATGTAATTTTTAGAAAGTTCGAGGGCAAAAATGTAATTTTGGAAGTTTGGG
Found at i:32567701 original size:29 final size:28
Alignment explanation
Indices: 32567515--32567694 Score: 134
Period size: 30 Copynumber: 6.2 Consensus size: 28
32567505 TTCGAGGGCA
* *
32567515 AAAATGCAATTTTGGAAAAGTTTAGGGGT-
1 AAAATGTAATTTT-GAGAAGTTT-GGGGTC
* *
32567544 AAAATGGAATTTTTG-GAAAGTTTGGGGGTA
1 AAAATGTAA-TTTTGAG-AAGTTT-GGGGTC
* *
32567574 AAAATATAATTTTG-GAAGTTCGAGGGTC
1 AAAATGTAATTTTGAGAAGTTTG-GGGTC
* * * *
32567602 AAAACT-TGATTTTTAGAAAGTTCGAGGGTA
1 AAAA-TGTAATTTTGAG-AAGTTTG-GGGTC
*
32567632 AAAATGTAATTTTGAGAAGTTTGGGGTT
1 AAAATGTAATTTTGAGAAGTTTGGGGTC
32567660 AAAATGTAATTTTAGAGAAGTTTAGGGGTC
1 AAAATGTAATTTT-GAGAAGTTT-GGGGTC
32567690 AAAAT
1 AAAAT
32567695 TTTTTTTGGA
Statistics
Matches: 126, Mismatches: 15, Indels: 19
0.79 0.09 0.12
Matches are distributed among these distances:
27 1 0.01
28 36 0.29
29 44 0.35
30 45 0.36
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.33
Consensus pattern (28 bp):
AAAATGTAATTTTGAGAAGTTTGGGGTC
Found at i:32568838 original size:16 final size:16
Alignment explanation
Indices: 32568800--32568849 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
32568790 GTTCGACTCC
*
32568800 TTTTATTTATTTATTA
1 TTTTATTTATTAATTA
32568816 --TTA-TTATT-ATTA
1 TTTTATTTATTAATTA
32568828 TATTTATTTATTAATTA
1 T-TTTATTTATTAATTA
32568845 TTTTA
1 TTTTA
32568850 AAAATAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 4 0.14
13 5 0.17
14 3 0.10
15 3 0.10
16 9 0.31
17 5 0.17
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTATTTATTAATTA
Found at i:32571953 original size:2 final size:2
Alignment explanation
Indices: 32571946--32571970 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32571936 AAATAGTAAA
32571946 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
32571971 AAACCCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:32572595 original size:21 final size:21
Alignment explanation
Indices: 32572569--32572619 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
32572559 AAGATAAGAC
32572569 TGAAGAAGAGAAGGGCATGCG
1 TGAAGAAGAGAAGGGCATGCG
*
32572590 TGAAGAAGGGAAGGGCATGCG
1 TGAAGAAGAGAAGGGCATGCG
32572611 TGAAGAAGA
1 TGAAGAAGA
32572620 AGGTAATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.39, C:0.08, G:0.43, T:0.10
Consensus pattern (21 bp):
TGAAGAAGAGAAGGGCATGCG
Found at i:32572975 original size:6 final size:6
Alignment explanation
Indices: 32572964--32573047 Score: 63
Period size: 6 Copynumber: 14.5 Consensus size: 6
32572954 TATTATTTTT
*
32572964 TATTAA TATTAA GTAATT-A -A-TAA TATTAA TATTAA TATT-A TATTTA
1 TATTAA TATTAA -T-ATTAA TATTAA TATTAA TATTAA TATTAA TATTAA
* * *
32573010 TATTAA TAATTAA TA-T-A TTTTTA TATTTA TATTAA TAT
1 TATTAA T-ATTAA TATTAA TATTAA TATTAA TATTAA TAT
32573048 ATTTCGATTT
Statistics
Matches: 65, Mismatches: 4, Indels: 18
0.75 0.05 0.21
Matches are distributed among these distances:
3 1 0.02
4 4 0.06
5 8 0.12
6 41 0.63
7 8 0.12
8 3 0.05
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (6 bp):
TATTAA
Found at i:32572989 original size:17 final size:15
Alignment explanation
Indices: 32572967--32573019 Score: 61
Period size: 17 Copynumber: 3.3 Consensus size: 15
32572957 TATTTTTTAT
32572967 TAATATTAAGTAATTAA
1 TAATATTAA-T-ATTAA
32572984 TAATATTAATATTAA
1 TAATATTAATATTAA
*
32572999 TATTATATTTATATTAA
1 TA--ATATTAATATTAA
32573016 TAAT
1 TAAT
32573020 TAATATATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 9 0.27
16 1 0.03
17 23 0.70
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
TAATATTAATATTAA
Found at i:32572990 original size:23 final size:21
Alignment explanation
Indices: 32572970--32573050 Score: 73
Period size: 23 Copynumber: 3.9 Consensus size: 21
32572960 TTTTTATTAA
32572970 TATTAAGTAATTAATAATATTAA
1 TATTAA-TAATTAAT-ATATTAA
32572993 TATTAAT-ATT-ATAT-TT-A
1 TATTAATAATTAATATATTAA
*
32573010 TATTAATAATTAATATATTTTTA
1 TATTAATAATTAATATA--TTAA
*
32573033 TATTTAT-ATTAATATATT
1 TATTAATAATTAATATATT
32573051 TCGATTTAGA
Statistics
Matches: 51, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
17 8 0.16
18 5 0.10
19 6 0.12
20 4 0.08
21 3 0.06
22 12 0.24
23 13 0.25
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (21 bp):
TATTAATAATTAATATATTAA
Found at i:32573016 original size:29 final size:28
Alignment explanation
Indices: 32572984--32573047 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 28
32572974 AAGTAATTAA
32572984 TAATATTAATATTAATATTATATTTATAT
1 TAATATTAATA-TAATATTATATTTATAT
* *
32573013 TAATAATTAATATATTTTTATATTTATAT
1 TAAT-ATTAATATAATATTATATTTATAT
32573042 TAATAT
1 TAATAT
32573048 ATTTCGATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
28 2 0.06
29 23 0.72
30 7 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
TAATATTAATATAATATTATATTTATAT
Found at i:32573090 original size:17 final size:17
Alignment explanation
Indices: 32573070--32573136 Score: 50
Period size: 19 Copynumber: 3.9 Consensus size: 17
32573060 AAATTTATAT
32573070 TTCTATATTATTTTTTA
1 TTCTATATTATTTTTTA
* *
32573087 TTCTAT-CTA-TTATTA
1 TTCTATATTATTTTTTA
*
32573102 TATATATATTATTATTTTA
1 T-TCTATATTATT-TTTTA
32573121 TT-TAAATATTATTTTT
1 TTCT--ATATTATTTTT
32573137 ATTTAGTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
15 6 0.15
16 6 0.15
17 9 0.23
18 5 0.13
19 13 0.33
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (17 bp):
TTCTATATTATTTTTTA
Found at i:32573147 original size:17 final size:16
Alignment explanation
Indices: 32573075--32573149 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 16
32573065 TATATTTCTA
32573075 TATTATTTTTTATTCTAT
1 TATTA-TTTTTATT-TAT
* *
32573093 CTATTATTATATATATAT
1 -TATTATT-TTTATTTAT
*
32573111 TATTA-TTTTATTTAAA
1 TATTATTTTTATTT-AT
32573127 TATTATTTTTATTTAGT
1 TATTATTTTTATTTA-T
32573144 TATTAT
1 TATTAT
32573150 CTATATTTAG
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
15 5 0.11
16 8 0.17
17 19 0.41
18 5 0.11
19 9 0.20
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (16 bp):
TATTATTTTTATTTAT
Found at i:32573504 original size:170 final size:168
Alignment explanation
Indices: 32573216--32573550 Score: 535
Period size: 170 Copynumber: 2.0 Consensus size: 168
32573206 CCGGTAAATA
32573216 GACATCCACGGGAATTAGCTTATCCACCCCCCGAACAGTACTATAAGAATCAGTACTGAACATCC
1 GACATCCACGGGAATTAGCTTATCCACCCCCCGAACAGTACTATAAGAATCAGTACTGAACATCC
* * * *
32573281 CTCCTGTAACTGTACACGCGCCCATAGTAATGACATATTTAGGTTTGGGCATTTGTTCATATATA
66 CTCCTATAACTGTACACGCGCCCATAGCAATAACATATTTAGGTTTAGGCATTTGTTC--ATATA
*
32573346 ATCTCACTAAAGAGGGCGCCATTTTCATTGTTACTGTATG
129 ATCTCACTAAAGAGAGCGCCATTTTCATTGTTACTGTATG
* * * *
32573386 GACATCCACGGGAATTAGCTTTTCGACCCCCCGAACAGTACTATAAGAATCATTATTGAACATCC
1 GACATCCACGGGAATTAGCTTATCCACCCCCCGAACAGTACTATAAGAATCAGTACTGAACATCC
* *
32573451 CTCCTATAATTGTACATGCGCCCATAGCAATAACATATTTAGGTTTAGGCATTTGTTCATATAAT
66 CTCCTATAACTGTACACGCGCCCATAGCAATAACATATTTAGGTTTAGGCATTTGTTCATATAAT
* *
32573516 CTCACTAAAGAGAGTGTCATTTTCATTGTTACTGT
131 CTCACTAAAGAGAGCGCCATTTTCATTGTTACTGT
32573551 TCCAACTGTT
Statistics
Matches: 152, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
168 39 0.26
170 113 0.74
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (168 bp):
GACATCCACGGGAATTAGCTTATCCACCCCCCGAACAGTACTATAAGAATCAGTACTGAACATCC
CTCCTATAACTGTACACGCGCCCATAGCAATAACATATTTAGGTTTAGGCATTTGTTCATATAAT
CTCACTAAAGAGAGCGCCATTTTCATTGTTACTGTATG
Found at i:32574267 original size:41 final size:41
Alignment explanation
Indices: 32574173--32574362 Score: 240
Period size: 41 Copynumber: 4.7 Consensus size: 41
32574163 GCGCTTTCCC
*
32574173 AATGCCCTGACCTTTAGC-GACGCTTATGGG-AAGCGCTGCT
1 AATGCCCTGACCTTTAGCAG-CGCTTATGGGAAAGCGCCGCT
* * * *
32574213 AATGCCTTGACCTTTAGCAGTGCTTATGGGAAACCGCTGCT
1 AATGCCCTGACCTTTAGCAGCGCTTATGGGAAAGCGCCGCT
* * * *
32574254 AATGCCCTAACCTTTAGCGGAGCTTATAGGAAAGCGCCGCT
1 AATGCCCTGACCTTTAGCAGCGCTTATGGGAAAGCGCCGCT
* * *
32574295 AGTGCCCAGACCTTTAGCAGCGCTTATGAGAAAGCGCCGCT
1 AATGCCCTGACCTTTAGCAGCGCTTATGGGAAAGCGCCGCT
*
32574336 AATGCCCTGACCTTTAGCTGCGCTTAT
1 AATGCCCTGACCTTTAGCAGCGCTTAT
32574363 TGAAAAACTC
Statistics
Matches: 128, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
40 26 0.20
41 102 0.80
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (41 bp):
AATGCCCTGACCTTTAGCAGCGCTTATGGGAAAGCGCCGCT
Found at i:32574408 original size:40 final size:40
Alignment explanation
Indices: 32574345--32574440 Score: 138
Period size: 40 Copynumber: 2.4 Consensus size: 40
32574335 TAATGCCCTG
* * * * *
32574345 ACCTTTAGCTGCGCTTATTGAAAAACTCCGCTATTGCTTT
1 ACCTTTTGCGGCGCTTATGGAAAAACGCCACTATTGCTTT
*
32574385 ACCTTTTGCGGCGTTTATGGAAAAACGCCACTATTGCTTT
1 ACCTTTTGCGGCGCTTATGGAAAAACGCCACTATTGCTTT
32574425 ACCTTTTGCGGCGCTT
1 ACCTTTTGCGGCGCTT
32574441 TCTTTCCAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (40 bp):
ACCTTTTGCGGCGCTTATGGAAAAACGCCACTATTGCTTT
Found at i:32576997 original size:16 final size:16
Alignment explanation
Indices: 32576975--32577021 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
32576965 TCTCTATTCC
*
32576975 CATCTTTT-TATTTTT
1 CATCTTTTCAATTTTT
32576990 CTATCTTTTCAATTTTT
1 C-ATCTTTTCAATTTTT
*
32577007 CATCTTTCCAATTTT
1 CATCTTTTCAATTTT
32577022 CTTTTCACTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 1 0.04
16 20 0.71
17 7 0.25
ACGTcount: A:0.17, C:0.19, G:0.00, T:0.64
Consensus pattern (16 bp):
CATCTTTTCAATTTTT
Found at i:32577888 original size:18 final size:18
Alignment explanation
Indices: 32577858--32577895 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
32577848 TATTTGAAAC
32577858 AAATTAGAAAAATTTAGAA
1 AAATTAGAAAAATTTA-AA
32577877 AAATTA-AAAAATTTAAA
1 AAATTAGAAAAATTTAAA
32577894 AA
1 AA
32577896 CAAGGGTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.21
18 9 0.47
19 6 0.32
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.26
Consensus pattern (18 bp):
AAATTAGAAAAATTTAAA
Found at i:32580251 original size:2 final size:2
Alignment explanation
Indices: 32580244--32580272 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
32580234 CAAAACTACA
32580244 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
32580273 CCAAATTACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:32580820 original size:23 final size:24
Alignment explanation
Indices: 32580794--32580853 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
32580784 TCCCAACCTT
32580794 TTTTATTTTTAAAATT-AAATTAA
1 TTTTATTTTTAAAATTAAAATTAA
*
32580817 TTTT-TATTTTAAAATTAAAATTTA
1 TTTTAT-TTTTAAAATTAAAATTAA
*
32580841 TATTATTATTTAA
1 TTTTATT-TTTAA
32580854 TCTAATTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 1 0.03
23 14 0.45
24 10 0.32
25 6 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTTATTTTTAAAATTAAAATTAA
Found at i:32603600 original size:29 final size:28
Alignment explanation
Indices: 32603513--32603791 Score: 142
Period size: 29 Copynumber: 9.6 Consensus size: 28
32603503 TTTGAGGTTG
* *
32603513 AAAATGAAATTTTTGGAATTTTAGGGGT-
1 AAAATGAAATTTTTGGAAGTTCA-GGGTA
* * **
32603541 AAAATGTAA-TTTTGAAAGTTTTGGGGTTA
1 AAAATGAAATTTTTGGAAG-TTCAGGG-TA
*
32603570 AAAATGAAACTTTTGGAAGTTCAGGG-A
1 AAAATGAAATTTTTGGAAGTTCAGGGTA
* * *
32603597 TAAAATGGTAATTTTTGAAAGTTTCAAGGTCA
1 -AAAAT-GAAATTTTTGGAAG-TTCAGGGT-A
* * *
32603629 AAAGTGGAATTTTTGGAAGTTTAGGGGTA
1 AAAATGAAATTTTTGGAAGTTCA-GGGTA
**
32603658 AAAAT-ATAATTTTTGGAAGTTTTGGAGTCA
1 AAAATGA-AATTTTTGGAAGTTCAGG-GT-A
* *
32603688 AAAATGGGAA-TTTTAGAAGTTCGAGGGTA
1 AAAAT-GAAATTTTTGGAAGTTC-AGGGTA
* *
32603717 GAAATGTAAA-TTTTGGAAGTTTC-GGGTC
1 AAAATG-AAATTTTTGGAAG-TTCAGGGTA
* *
32603745 AAAA-GTAGAATTTTTGGAAGTTTAGGGGTC
1 AAAATG-A-AATTTTTGGAAGTTCA-GGGTA
*
32603775 AAAATGTAATTTTTGGA
1 AAAATGAAATTTTTGGA
32603792 CAATTTAGGG
Statistics
Matches: 197, Mismatches: 31, Indels: 45
0.72 0.11 0.16
Matches are distributed among these distances:
27 14 0.07
28 31 0.16
29 83 0.42
30 59 0.30
31 9 0.05
32 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.35
Consensus pattern (28 bp):
AAAATGAAATTTTTGGAAGTTCAGGGTA
Found at i:32603643 original size:59 final size:57
Alignment explanation
Indices: 32603513--32603789 Score: 281
Period size: 59 Copynumber: 4.8 Consensus size: 57
32603503 TTTGAGGTTG
* * * *
32603513 AAAATGAAATTTTTGGAATTTTAGGGGTAAAATGTAA-TTTTGAAAGTTTTGGGGTTA
1 AAAATGGAATTTTTGGAAGTTTAGGGGTAAAATGTAATTTTTGAAAG-TTTCGGGTCA
* * * * *
32603570 AAAATGAAACTTTTGGAAGTTCAGGGATAAAATGGTAATTTTTGAAAGTTTCAAGGTCA
1 AAAATGGAATTTTTGGAAGTTTAGGGGTAAAAT-GTAATTTTTGAAAGTTTC-GGGTCA
* * * *
32603629 AAAGTGGAATTTTTGGAAGTTTAGGGGTAAAAATATAATTTTTGGAAGTTTTGGAGTCA
1 AAAATGGAATTTTTGGAAGTTTAGGGGT-AAAATGTAATTTTTGAAAGTTTCGG-GTCA
* * * *
32603688 AAAATGGGAA-TTTTAGAAG-TTCGAGGGTAGAAATGTAAATTTTGGAAGTTTCGGGTCA
1 AAAAT-GGAATTTTTGGAAGTTTAG-GGGTA-AAATGTAATTTTTGAAAGTTTCGGGTCA
* *
32603746 AAAGTAGAATTTTTGGAAGTTTAGGGGTCAAAATGTAATTTTTG
1 AAAATGGAATTTTTGGAAGTTTAGGGGT-AAAATGTAATTTTTG
32603790 GACAATTTAG
Statistics
Matches: 182, Mismatches: 27, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
57 32 0.18
58 45 0.25
59 96 0.53
60 9 0.05
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (57 bp):
AAAATGGAATTTTTGGAAGTTTAGGGGTAAAATGTAATTTTTGAAAGTTTCGGGTCA
Found at i:32604921 original size:13 final size:12
Alignment explanation
Indices: 32604903--32604944 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
32604893 CTTTTTTTTA
32604903 TATTAACATTATT
1 TATTAA-ATTATT
*
32604916 TATTAAA-TACT
1 TATTAAATTATT
32604927 TATTAAATCTATT
1 TATTAAAT-TATT
32604940 TATTA
1 TATTA
32604945 CTACTATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 10 0.40
12 1 0.04
13 14 0.56
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTAAATTATT
Found at i:32606266 original size:86 final size:86
Alignment explanation
Indices: 32606121--32606323 Score: 370
Period size: 86 Copynumber: 2.4 Consensus size: 86
32606111 GAGCGTCGAG
* *
32606121 TTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTCTG
1 TTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTCTG
32606186 TATCTCATCAGGAAGACGAAT
66 TATCTCATCAGGAAGACGAAT
32606207 TTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTCTG
1 TTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTCTG
*
32606272 TATCTCATCAGGAAGATGAAT
66 TATCTCATCAGGAAGACGAAT
*
32606293 TTGGTCCACTTCTCAGTATCTCATCAGGAAG
1 TTGGTCTACTTCTCAGTATCTCATCAGGAAG
32606324 CTAACCATTT
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 113 1.00
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (86 bp):
TTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTCTG
TATCTCATCAGGAAGACGAAT
Found at i:32606448 original size:207 final size:205
Alignment explanation
Indices: 32606205--32606701 Score: 778
Period size: 207 Copynumber: 2.4 Consensus size: 205
32606195 AGGAAGACGA
* * *
32606205 ATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATCTGCTTCTC
1 ATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCA-TTGTTTCAATCTGCTTCTC
32606270 TGTATCTCATCAGGAAGATGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTT
65 TGTATCTCATCAGGAAGATGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTT
*
32606335 ATTACTTCGACTTGCTTCTCAATATCTCATCAGGAAGCTGGGGGTTCGAAGACTTGCTCATATCG
130 ATTACTTCGACCTGCTTCTCAATATCTCATCAGGAAGCT-GGGGTTCGAAGACTTGCTCATATCG
*
32606400 AGCGTGGGTTTG
194 AGCGTGAGTTTG
32606412 ATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCATTTGTTTCAATCTGCTTCTC
1 ATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCA-TTGTTTCAATCTGCTTCTC
* * *
32606477 TATATCTCATCAGGAAGACGGATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTT
65 TGTATCTCATCAGGAAGATGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTT
* * **
32606542 ATTATTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGGTTTGCTCATATCGA
130 ATTACTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGACTTGCTCATATCGA
32606607 GCGTGAGTTTG
195 GCGTGAGTTTG
* * * *** * * *
32606618 ATTTGGTCTTCTTCTCAGTATCTCATAAAAAATATGACCATTTTATTGTTTCAACCTGCTTCTCA
1 ATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCATTGTTTCAATCTGCTTCTCT
32606683 GTATCTCATCAGGAAGATG
66 GTATCTCATCAGGAAGATG
32606702 GGGTTCGAAG
Statistics
Matches: 266, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
205 35 0.13
206 72 0.27
207 159 0.60
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.36
Consensus pattern (205 bp):
ATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGATGACCGCATCATTGTTTCAATCTGCTTCTCT
GTATCTCATCAGGAAGATGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTA
TTACTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAAGACTTGCTCATATCGAG
CGTGAGTTTG
Found at i:32606664 original size:120 final size:120
Alignment explanation
Indices: 32606497--32606820 Score: 443
Period size: 120 Copynumber: 2.7 Consensus size: 120
32606487 CAGGAAGACG
** * * *
32606497 GATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTATTTCGACCTGCTTCTC
1 GATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCATTTTATTATTTCAACCTGCTTCTC
* * * * *
32606562 AGTATCTCATCAGGAAGCTGGGGTTCGAAGGTTTGCTCATATCGAGCGTGAGTTT
66 AGTATCTCATCAGGAAGATGGGGTTCGAAGATTTCCTCACATCGAGCATGAGTTT
* ** * *
32606617 GATTTGGTCTTCTTCTCAGTATCTCATAAAAAATATGACCATTTTATTGTTTCAACCTGCTTCTC
1 GATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCATTTTATTATTTCAACCTGCTTCTC
*
32606682 AGTATCTCATCAGGAAGATGGGGTTCGAAGATTTCCTCACATCGAGCATGGGTTT
66 AGTATCTCATCAGGAAGATGGGGTTCGAAGATTTCCTCACATCGAGCATGAGTTT
***
32606737 GATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTACTTATTTCAATCC-GCTTC
1 GATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCATTTTA-TTATTTCAA-CCTGCTTC
*
32606801 TCTGTATCTCATCAGGAAGA
64 TCAGTATCTCATCAGGAAGA
32606821 CGAATTTGGT
Statistics
Matches: 177, Mismatches: 25, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
120 143 0.81
121 32 0.18
122 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (120 bp):
GATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCATTTTATTATTTCAACCTGCTTCTC
AGTATCTCATCAGGAAGATGGGGTTCGAAGATTTCCTCACATCGAGCATGAGTTT
Found at i:32606885 original size:326 final size:327
Alignment explanation
Indices: 32606291--32607026 Score: 1098
Period size: 326 Copynumber: 2.3 Consensus size: 327
32606281 AGGAAGATGA
** * * ** * *
32606291 ATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACTTGCTTCTCA
1 ATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCATTTTATTGTTTCAACCTGCTTCTCA
* * * * *
32606356 ATATCTCATCAGGAAGCTGGGGGTTCGAAGACTTGCTCATATCGAGCGTGGGTTTGATTTGGTCT
66 GTATCTCATCAGGAAGATGGGGGTTCGAAGACTTCCTCACATCGAGCATGGGTTTGATTTGGTCT
* * *
32606421 TCTTCTCAGTATCTCATCAAGAAGATGACCGCATCATTTGTTTCAATCTGCTTCTCTATATCTCA
131 TCTTCTCAGTATCTCATCAAGAAGATGACCGCATCACTTATTTCAATCCGCTTCTCTATATCTCA
* *
32606486 TCAGGAAGACGGATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTATTTCG
196 TCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCG
* * *
32606551 ACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGGTTTGCTCATATCGAGCGTGAGTT
261 ACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCATGAGTT
32606616 TG
326 TG
* ** *
32606618 ATTTGGTCTTCTTCTCAGTATCTCATAAAAAATATGACCATTTTATTGTTTCAACCTGCTTCTCA
1 ATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCATTTTATTGTTTCAACCTGCTTCTCA
*
32606683 GTATCTCATCAGGAAGAT-GGGGTTCGAAGATTTCCTCACATCGAGCATGGGTTTGATTTGGTCT
66 GTATCTCATCAGGAAGATGGGGGTTCGAAGACTTCCTCACATCGAGCATGGGTTTGATTTGGTCT
* * *
32606747 TCTTCTCAGTATCTCATCAGGAAGATGACCGCATTACTTATTTCAATCCGCTTCTCTGTATCTCA
131 TCTTCTCAGTATCTCATCAAGAAGATGACCGCATCACTTATTTCAATCCGCTTCTCTATATCTCA
*
32606812 TCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCG
196 TCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCG
* * *
32606877 ACCTGCTTCTTAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTCTCACATCGAGCATGGGTT
261 ACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCATGAGTT
32606942 TG
326 TG
* **
32606944 ATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGTATTGCTTGTTTCAATCC-GCTTCT
1 ATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCAT-TTTATTGTTTCAA-CCTGCTTCT
* *
32607008 CTGTATCTCATCAGAAAGA
64 CAGTATCTCATCAGGAAGA
32607027 CGAATTTGGT
Statistics
Matches: 365, Mismatches: 42, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
326 260 0.71
327 103 0.28
328 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.35
Consensus pattern (327 bp):
ATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCATTTTATTGTTTCAACCTGCTTCTCA
GTATCTCATCAGGAAGATGGGGGTTCGAAGACTTCCTCACATCGAGCATGGGTTTGATTTGGTCT
TCTTCTCAGTATCTCATCAAGAAGATGACCGCATCACTTATTTCAATCCGCTTCTCTATATCTCA
TCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCG
ACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCATGAGTT
TG
Found at i:32607056 original size:206 final size:206
Alignment explanation
Indices: 32606618--32607064 Score: 732
Period size: 206 Copynumber: 2.2 Consensus size: 206
32606608 CGTGAGTTTG
** * * ** * *
32606618 ATTTGGTCTTCTTCTCAGTATCTCATAAAAAATATGACCATTTTATTGTTTCAACCTGCTTCTCA
1 ATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCA
32606683 GTATCTCATCAGGAAGATGGGGTTCGAAGATTTCCTCACATCGAGCATGGGTTTGATTTGGTCTT
66 GTATCTCATCAGGAAGATGGGGTTCGAAGATTTCCTCACATCGAGCATGGGTTTGATTTGGTCTT
32606748 CTTCTCAGTATCTCATCAGGAAGATGACCGCATTACTTATTTCAATCCGCTTCTCTGTATCTCAT
131 CTTCTCAGTATCTCATCAGGAAGATGACCGCATTACTTATTTCAATCCGCTTCTCTGTATCTCAT
*
32606813 CAGGAAGACGA
196 CAGAAAGACGA
* * *
32606824 ATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTTA
1 ATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCA
* *
32606889 GTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTCTCACATCGAGCATGGGTTTGATTTGGTCTT
66 GTATCTCATCAGGAAGATGGGGTTCGAAGATTTCCTCACATCGAGCATGGGTTTGATTTGGTCTT
* * *
32606954 CTTCTCAGTATCTCATCAGGAAGATGACCGTATTGCTTGTTTCAATCCGCTTCTCTGTATCTCAT
131 CTTCTCAGTATCTCATCAGGAAGATGACCGCATTACTTATTTCAATCCGCTTCTCTGTATCTCAT
32607019 CAGAAAGACGA
196 CAGAAAGACGA
*
32607030 ATTTGGTTCACTTCTCAGTATCTCATCAAGAAGCT
1 ATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCT
32607065 GGGGTTCGAA
Statistics
Matches: 222, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
206 222 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (206 bp):
ATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCA
GTATCTCATCAGGAAGATGGGGTTCGAAGATTTCCTCACATCGAGCATGGGTTTGATTTGGTCTT
CTTCTCAGTATCTCATCAGGAAGATGACCGCATTACTTATTTCAATCCGCTTCTCTGTATCTCAT
CAGAAAGACGA
Found at i:32607084 original size:158 final size:158
Alignment explanation
Indices: 32606882--32607304 Score: 765
Period size: 158 Copynumber: 2.7 Consensus size: 158
32606872 CTTCGACCTG
*
32606882 CTTCTTAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTCTCACATCGAGCATGGGTTTGATT
1 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTCTCACATCGAGCATGGGTTTGATT
*
32606947 TGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGTATTGCTTGTTTCAATCCGCTTCTCTGT
66 TGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTGCTTGTTTCAATCCGCTTCTCTGT
* *
32607012 ATCTCATCAGAAAGACGAATTTGGTTCA
131 ATCTCATCAGAAAGACGAATTTAGTCCA
* *
32607040 CTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTTCTCACATTGAGCATGGGTTTGATT
1 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTCTCACATCGAGCATGGGTTTGATT
32607105 TGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTGCTTGTTTCAATCCGCTTCTCTGT
66 TGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTGCTTGTTTCAATCCGCTTCTCTGT
*
32607170 ATCTCATCAGGAAGACGAATTTAGTCCA
131 ATCTCATCAGAAAGACGAATTTAGTCCA
* *
32607198 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCAAAGATTTGCTCACATCGAGCATGGGTTTGATT
1 CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTCTCACATCGAGCATGGGTTTGATT
32607263 TGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTG
66 TGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTG
32607305 TTATTTGTGG
Statistics
Matches: 254, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
158 254 1.00
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (158 bp):
CTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTCTCACATCGAGCATGGGTTTGATT
TGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATTGCTTGTTTCAATCCGCTTCTCTGT
ATCTCATCAGAAAGACGAATTTAGTCCA
Found at i:32607417 original size:39 final size:39
Alignment explanation
Indices: 32607368--32607571 Score: 141
Period size: 39 Copynumber: 5.2 Consensus size: 39
32607358 TGGTAATCAA
32607368 CCCAGGCTCGGGGTAAAAGATCAAATGGTTTCAATCTGC
1 CCCAGGCTCGGGGTAAAAGATCAAATGGTTTCAATCTGC
* * * ** * * *
32607407 CCTAGGCTCGGGGTAAGAGATTAGTTGATGAT-GATCTGC
1 CCCAGGCTCGGGGTAAAAGATCAAATGGT-TTCAATCTGC
* * * *
32607446 CCCAAGCTCGGGGTGAAAGATCAAATGGCTTCAATATGC
1 CCCAGGCTCGGGGTAAAAGATCAAATGGTTTCAATCTGC
* * * *
32607485 CCCAAGCTCAGGGTAAGAGAT----TGGTTGATGATGATCTGC
1 CCCAGGCTCGGGGTAAAAGATCAAATGGTT--TCA--ATCTGC
* *
32607524 CCCAGGCTCGAGGTGAAAGATCAAAT-GTCTTCAATCTGC
1 CCCAGGCTCGGGGTAAAAGATCAAATGGT-TTCAATCTGC
*
32607563 CCCAAGCTC
1 CCCAGGCTC
32607572 AATGTAAGAT
Statistics
Matches: 121, Mismatches: 33, Indels: 22
0.69 0.19 0.12
Matches are distributed among these distances:
35 4 0.03
37 2 0.02
38 1 0.01
39 107 0.88
40 1 0.01
41 2 0.02
42 2 0.02
43 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
CCCAGGCTCGGGGTAAAAGATCAAATGGTTTCAATCTGC
Found at i:32607470 original size:78 final size:78
Alignment explanation
Indices: 32607368--32607595 Score: 314
Period size: 78 Copynumber: 2.9 Consensus size: 78
32607358 TGGTAATCAA
* * * *
32607368 CCCAGGCTCGGGGTAAAAGATCAAATGGTTTCAATCTGCCCTAGGCTCGGGGTAAGAGATTAGTT
1 CCCAGGCTCGGGGTGAAAGATCAAATGGTTTCAATCTGCCCCAAGCTCAGGGTAAGAGATTAGTT
32607433 GATGATGATCTGC
66 GATGATGATCTGC
* * * *
32607446 CCCAAGCTCGGGGTGAAAGATCAAATGGCTTCAATATGCCCCAAGCTCAGGGTAAGAGATTGGTT
1 CCCAGGCTCGGGGTGAAAGATCAAATGGTTTCAATCTGCCCCAAGCTCAGGGTAAGAGATTAGTT
32607511 GATGATGATCTGC
66 GATGATGATCTGC
* ** * *
32607524 CCCAGGCTCGAGGTGAAAGATCAAAT-GTCTTCAATCTGCCCCAAGCTCAATGTAAGATATTGGT
1 CCCAGGCTCGGGGTGAAAGATCAAATGGT-TTCAATCTGCCCCAAGCTCAGGGTAAGAGATTAGT
*
32607588 TAATGATG
65 TGATGATG
32607596 TAACTTTACT
Statistics
Matches: 133, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
77 1 0.01
78 132 0.99
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (78 bp):
CCCAGGCTCGGGGTGAAAGATCAAATGGTTTCAATCTGCCCCAAGCTCAGGGTAAGAGATTAGTT
GATGATGATCTGC
Found at i:32608050 original size:150 final size:150
Alignment explanation
Indices: 32607878--32608181 Score: 473
Period size: 150 Copynumber: 2.0 Consensus size: 150
32607868 CAAATTTTCG
* * *
32607878 TGGTACTGGATTCGCCGTTGCGGATTAAATCTTTCCTTTCCTGTCTTCTGAGGTGCACGGTCCAC
1 TGGTACTGGATTCGCCGTTGCGGATTAAATCTTTCCCTTCCTATCTTCTGAGGTACACGGTCCAC
* * **
32607943 CGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGGTACTGGATCTGCCGTTGCGGTCTTAGA
66 CGTTGCAACTTAAACCTTTCCCTTTTGCATCTTTGTGGTACTGGATCCACCGTTGCGGTCTTAGA
32608008 TCTTTCCCTTCATGTCTTCA
131 TCTTTCCCTTCATGTCTTCA
* * * * *
32608028 TGGTACTGGATTCGCTGTTGCGGCTTAAATCTTTCCCTTCTTATCTTCTGAGGTACACGGTTCGC
1 TGGTACTGGATTCGCCGTTGCGGATTAAATCTTTCCCTTCCTATCTTCTGAGGTACACGGTCCAC
* *
32608093 CGTTGCAACTTAGACCTTTCCCTTTTGCATCTTTGTGGTACTGGATCCACCGTTGTGGTCTTAGA
66 CGTTGCAACTTAAACCTTTCCCTTTTGCATCTTTGTGGTACTGGATCCACCGTTGCGGTCTTAGA
*
32608158 TTTTTCCCTTCATGTCTTCA
131 TCTTTCCCTTCATGTCTTCA
32608178 TGGT
1 TGGT
32608182 TCTGAGACTT
Statistics
Matches: 139, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
150 139 1.00
ACGTcount: A:0.13, C:0.25, G:0.21, T:0.40
Consensus pattern (150 bp):
TGGTACTGGATTCGCCGTTGCGGATTAAATCTTTCCCTTCCTATCTTCTGAGGTACACGGTCCAC
CGTTGCAACTTAAACCTTTCCCTTTTGCATCTTTGTGGTACTGGATCCACCGTTGCGGTCTTAGA
TCTTTCCCTTCATGTCTTCA
Found at i:32608146 original size:50 final size:50
Alignment explanation
Indices: 32607848--32608147 Score: 199
Period size: 50 Copynumber: 6.0 Consensus size: 50
32607838 TTTGCCATCA
** *
32607848 CGACTTAAACCTTTCCCCTTC-AAAT-TTTCGTGGTACTGGATTCGCCGTTG
1 CGACTTAAACCTTT-CCCTTCTTGATCTTT-GTGGTACTGGATCCGCCGTTG
* * * * *
32607898 CGGA-TTAAATCTTTCCTTTCCTG-TCTTCTGAGGTGCAC-GG-TCCACCGTTG
1 C-GACTTAAACCTTTCCCTTCTTGATCTT-TGTGGT--ACTGGATCCGCCGTTG
*
32607948 CGACTTAAACCTTTCCCTT-TTGTATCTTTGTGGTACTGGATCTGCCGTTG
1 CGACTTAAACCTTTCCCTTCTTG-ATCTTTGTGGTACTGGATCCGCCGTTG
* * * * ** * *
32607998 CGGTCTTAGATCTTTCCCTTCATG-TCTTCATGGTACTGGATTCGCTGTTG
1 C-GACTTAAACCTTTCCCTTCTTGATCTTTGTGGTACTGGATCCGCCGTTG
* * * * *
32608048 CGGCTTAAATCTTTCCCTTCTT-ATCTTCTGAGGTACACGG-TTCGCCGTTG
1 CGACTTAAACCTTTCCCTTCTTGATCTT-TGTGGTAC-TGGATCCGCCGTTG
* * *
32608098 CAACTTAGACCTTTCCCTT-TTGCATCTTTGTGGTACTGGATCCACCGTTG
1 CGACTTAAACCTTTCCCTTCTTG-ATCTTTGTGGTACTGGATCCGCCGTTG
32608148 TGGTCTTAGA
Statistics
Matches: 193, Mismatches: 38, Indels: 38
0.72 0.14 0.14
Matches are distributed among these distances:
48 2 0.01
49 38 0.20
50 118 0.61
51 31 0.16
52 4 0.02
ACGTcount: A:0.15, C:0.27, G:0.20, T:0.39
Consensus pattern (50 bp):
CGACTTAAACCTTTCCCTTCTTGATCTTTGTGGTACTGGATCCGCCGTTG
Found at i:32609181 original size:7 final size:7
Alignment explanation
Indices: 32609169--32609247 Score: 78
Period size: 7 Copynumber: 11.3 Consensus size: 7
32609159 CGACCTCTCC
32609169 TTTTCTT
1 TTTTCTT
32609176 TTTTCTCT
1 TTTTCT-T
32609184 TTTCTCTT
1 TTT-TCTT
32609192 TTTTC--
1 TTTTCTT
32609197 TTTTCTT
1 TTTTCTT
32609204 TTTTC-T
1 TTTTCTT
32609210 TTTTCTT
1 TTTTCTT
32609217 TTTAT-TT
1 TTT-TCTT
32609224 TTCTTCTT
1 TT-TTCTT
32609232 TTTT-TT
1 TTTTCTT
32609238 CTTTTCTT
1 -TTTTCTT
32609246 TT
1 TT
32609248 ATTCATTGAA
Statistics
Matches: 62, Mismatches: 0, Indels: 20
0.76 0.00 0.24
Matches are distributed among these distances:
5 5 0.08
6 8 0.13
7 30 0.48
8 16 0.26
9 3 0.05
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTCTT
Found at i:32609200 original size:28 final size:28
Alignment explanation
Indices: 32609168--32609251 Score: 111
Period size: 28 Copynumber: 3.0 Consensus size: 28
32609158 TCGACCTCTC
32609168 CTTTTCTTTTTTCTCTTTTCTCTTTT-TT
1 CTTTTCTTTTTTCTCTTTTCT-TTTTATT
32609196 CTTTTCTTTTTTCT-TTTTCTTTTTATT
1 CTTTTCTTTTTTCTCTTTTCTTTTTATT
* *
32609223 TTTCTTCTTTTTTTTCTTTTC-TTTTATT
1 CTT-TTCTTTTTTCTCTTTTCTTTTTATT
32609251 C
1 C
32609252 ATTGAATTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
26 4 0.08
27 10 0.20
28 31 0.62
29 5 0.10
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (28 bp):
CTTTTCTTTTTTCTCTTTTCTTTTTATT
Found at i:32609247 original size:12 final size:12
Alignment explanation
Indices: 32609168--32609242 Score: 73
Period size: 12 Copynumber: 5.8 Consensus size: 12
32609158 TCGACCTCTC
32609168 CTTTTCTTTTTTCT
1 CTTTTC-TTTTT-T
32609182 CTTTTCTCTTTTTT
1 C-TTT-TCTTTTTT
32609196 CTTTTCTTTTTT
1 CTTTTCTTTTTT
32609208 CTTTTTCTTTTTAT
1 C-TTTTCTTTTT-T
32609222 -TTTTCTTCTTTT
1 CTTTTCTT-TTTT
32609234 -TTTTCTTTT
1 CTTTTCTTTT
32609243 CTTTTATTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 13
0.81 0.00 0.19
Matches are distributed among these distances:
11 2 0.04
12 24 0.43
13 16 0.29
14 4 0.07
15 8 0.14
16 2 0.04
ACGTcount: A:0.01, C:0.17, G:0.00, T:0.81
Consensus pattern (12 bp):
CTTTTCTTTTTT
Found at i:32614958 original size:29 final size:28
Alignment explanation
Indices: 32614868--32615207 Score: 158
Period size: 29 Copynumber: 11.7 Consensus size: 28
32614858 ATTTTGAGAT
* * *
32614868 TAAAAATGATATTTTT-GAACTTTTAGGGG
1 TAAAAATGAAATTTTTGGAA-GTTCA-GGG
* * **
32614897 TAAAAATGTAA-TTTTGAAAGTTTTGGGG
1 TAAAAATGAAATTTTTGGAAG-TTCAGGG
*
32614925 TTAAAAATGAAACTTTTGGAAGTTCAGGG
1 -TAAAAATGAAATTTTTGGAAGTTCAGGG
* *
32614954 -ATAAAATAGTAATTTTTGGAAGTTTCAAGG
1 TA-AAAAT-GAAATTTTTGGAAG-TTCAGGG
* * * *
32614984 TCAAAAGTGGATTTTTTGGAAGTTCGGGAG
1 T-AAAAATGAAATTTTTGGAAGTTCAGG-G
* *
32615014 TAAAAAT-ATAATTTTTGGAAGTTTTATGG
1 TAAAAATGA-AATTTTTGGAAG-TTCAGGG
* * *
32615043 TTAAAATAGGAA-TTTTGAAAGTTCGAGGG
1 TAAAAAT-GAAATTTTTGGAAGTTC-AGGG
* *
32615072 TAGAAATGTAAA-TTTTAGAAGTTTCAGGG
1 TAAAAATG-AAATTTTTGGAAG-TTCAGGG
* *
32615101 TCAAAA-GTAGAATTTTTGGAAGTTCGGGGG
1 TAAAAATG-A-AATTTTTGGAAGTTC-AGGG
* * * *
32615131 TCAAAATGAAAGTTTTGAAAGTTTCTGGG
1 TAAAAATGAAATTTTTGGAAG-TTCAGGG
32615160 TCAAAAAT-AGAATTTTTGGAAGTTCAAGGG
1 T-AAAAATGA-AATTTTTGGAAGTTC-AGGG
* *
32615190 T-CAAATGTAATTTTTGGA
1 TAAAAATGAAATTTTTGGA
32615208 CAATTTAGGG
Statistics
Matches: 239, Mismatches: 46, Indels: 53
0.71 0.14 0.16
Matches are distributed among these distances:
27 1 0.00
28 32 0.13
29 124 0.52
30 76 0.32
31 5 0.02
32 1 0.00
ACGTcount: A:0.36, C:0.04, G:0.24, T:0.36
Consensus pattern (28 bp):
TAAAAATGAAATTTTTGGAAGTTCAGGG
Found at i:32615001 original size:59 final size:57
Alignment explanation
Indices: 32614894--32615207 Score: 276
Period size: 59 Copynumber: 5.4 Consensus size: 57
32614884 GAACTTTTAG
* ** * * *
32614894 GGGTAAAAATGTAA-TTTTGAAAGTTTTGGGGTTAAAAAT-GAAACTTTTGGAAGTTCA
1 GGGT-AAAATGTAATTTTTGGAAGTTTCAGGGTCAAAAGTAG-AATTTTTGGAAGTTCA
* * * *
32614951 GGGATAAAATAGTAATTTTTGGAAGTTTCAAGGTCAAAAGTGGATTTTTTGGAAGTTCG
1 GGG-TAAAAT-GTAATTTTTGGAAGTTTCAGGGTCAAAAGTAGAATTTTTGGAAGTTCA
* * * * *
32615010 GGAGTAAAAATATAATTTTTGGAAGTTTTATGGTTAAAA-TAGGAA-TTTTGAAAGTTCGA
1 GG-GT-AAAATGTAATTTTTGGAAGTTTCAGGGTCAAAAGTA-GAATTTTTGGAAGTTC-A
* * *
32615069 GGGTAGAAATGTAAATTTTAGAAGTTTCAGGGTCAAAAGTAGAATTTTTGGAAGTTCGG
1 GGGTA-AAATGTAATTTTTGGAAGTTTCAGGGTCAAAAGTAGAATTTTTGGAAGTTC-A
* * * * *
32615128 GGGTCAAAATGAAAGTTTTGAAAGTTTCTGGGTCAAAAATAGAATTTTTGGAAGTTCAA
1 GGGT-AAAATGTAATTTTTGGAAGTTTCAGGGTCAAAAGTAGAATTTTTGGAAGTTC-A
*
32615187 GGGTCAAATGTAATTTTTGGA
1 GGGTAAAATGTAATTTTTGGA
32615208 CAATTTAGGG
Statistics
Matches: 208, Mismatches: 37, Indels: 23
0.78 0.14 0.09
Matches are distributed among these distances:
57 9 0.04
58 61 0.29
59 130 0.62
60 8 0.04
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.35
Consensus pattern (57 bp):
GGGTAAAATGTAATTTTTGGAAGTTTCAGGGTCAAAAGTAGAATTTTTGGAAGTTCA
Done.