Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 101 of 171
Found at i:32615001 original size:117 final size:114
Alignment explanation
Indices: 32614879--32615207 Score: 315
Period size: 117 Copynumber: 2.8 Consensus size: 114
32614869 AAAAATGATA
32614879 TTTTTGAACTTTTAGGGGTAAAAATGTAA-TTTTGAAAGTTTTGGGGTTAAAAATGAAACTTTTG
1 TTTTTGAA--TTTAGGGGTAAAAATGTAAGTTTTGAAAGTTTT-GGGTTAAAAATGAAA-TTTTG
*
32614943 GAAGTTC-AGGGATAAAATAGTAATTTTTGGAAGTTTCAAGGTCAAAAGT-GGAT
62 GAAGTTCAAGGG-TAAAAT-GTAATTTTTGGAAGTTTCAAGGTCAAAAGTAGAAT
* * * * * * *
32614996 TTTTTGGAAGTTCGGGAGTAAAAATATAATTTTTGGAAGTTTTATGGTT-AAAATAGGAATTTTG
1 TTTTT-GAATTTAGGG-GTAAAAATGTAAGTTTTGAAAGTTTT-GGGTTAAAAAT-GAAATTTTG
* * * * *
32615060 AAAGTTCGAGGGTAGAAATGTAAATTTTAGAAGTTTCAGGGTCAAAAGTAGAAT
62 GAAGTTCAAGGGTA-AAATGTAATTTTTGGAAGTTTCAAGGTCAAAAGTAGAAT
* ** * * * *
32615114 TTTTGGAAGTTCGGGGGTCAAAATGAAAGTTTTGAAAGTTTCTGGGTCAAAAATAGAATTTTTGG
1 TTTTTGAA-TTTAGGGGTAAAAATGTAAGTTTTGAAAGTTT-TGGGTTAAAAAT-GAAATTTTGG
*
32615179 AAGTTCAAGGGTCAAATGTAATTTTTGGA
63 AAGTTCAAGGGTAAAATGTAATTTTTGGA
32615208 CAATTTAGGG
Statistics
Matches: 172, Mismatches: 30, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
116 5 0.03
117 101 0.59
118 66 0.38
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (114 bp):
TTTTTGAATTTAGGGGTAAAAATGTAAGTTTTGAAAGTTTTGGGTTAAAAATGAAATTTTGGAAG
TTCAAGGGTAAAATGTAATTTTTGGAAGTTTCAAGGTCAAAAGTAGAAT
Found at i:32615191 original size:30 final size:29
Alignment explanation
Indices: 32614938--32615194 Score: 172
Period size: 29 Copynumber: 8.7 Consensus size: 29
32614928 AAAATGAAAC
32614938 TTTTGGAAGTTCAGGG--ATAAAATAGTAAT
1 TTTTGGAAGTTCAGGGTCA-AAAATAG-AAT
* * * *
32614967 TTTTGGAAGTTTCAAGGTCAAAAGTGGATT
1 TTTTGGAAG-TTCAGGGTCAAAAATAGAAT
* *
32614997 TTTTGGAAGTTCGGGAGT-AAAAATATAAT
1 TTTTGGAAGTTCAGG-GTCAAAAATAGAAT
* * *
32615026 TTTTGGAAGTTTTATGGT-TAAAATAGGAA-
1 TTTTGGAAG-TTCAGGGTCAAAAATA-GAAT
* * *
32615055 TTTTGAAAGTTCGAGGGT-AGAAAT-GTAAA
1 TTTTGGAAGTTC-AGGGTCAAAAATAG-AAT
* *
32615084 TTTTAGAAGTTTCAGGGTCAAAAGTAGAAT
1 TTTTGGAAG-TTCAGGGTCAAAAATAGAAT
* *
32615114 TTTTGGAAGTTCGGGGGTC-AAAAT-GAAAG
1 TTTTGGAAGTTC-AGGGTCAAAAATAG-AAT
* *
32615143 TTTTGAAAGTTTCTGGGTCAAAAATAGAAT
1 TTTTGGAAG-TTCAGGGTCAAAAATAGAAT
32615173 TTTTGGAAGTTCAAGGGTCAAA
1 TTTTGGAAGTTC-AGGGTCAAA
32615195 TGTAATTTTT
Statistics
Matches: 176, Mismatches: 34, Indels: 35
0.72 0.14 0.14
Matches are distributed among these distances:
27 1 0.01
28 5 0.03
29 90 0.51
30 72 0.41
31 7 0.04
32 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (29 bp):
TTTTGGAAGTTCAGGGTCAAAAATAGAAT
Found at i:32617092 original size:18 final size:16
Alignment explanation
Indices: 32617054--32617146 Score: 87
Period size: 17 Copynumber: 5.4 Consensus size: 16
32617044 CTTTGTTTAT
*
32617054 TTTAAATTTATAATAAT
1 TTTAAATTTA-AATAAA
32617071 TTTAAATTTGAAGATAAA
1 TTTAAATTT-AA-ATAAA
* *
32617089 TTTAAACTCAAATTAAA
1 TTTAAATTTAAA-TAAA
32617106 TTTAAATTTAAAATAAA
1 TTTAAATTT-AAATAAA
*
32617123 TTTAAATTTTAAAACAAA
1 TTTAAA-TTT-AAATAAA
32617141 TTTAAA
1 TTTAAA
32617147 ATGAGTTTGG
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
16 1 0.02
17 33 0.51
18 31 0.48
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (16 bp):
TTTAAATTTAAATAAA
Found at i:32617110 original size:6 final size:6
Alignment explanation
Indices: 32617054--32617131 Score: 56
Period size: 6 Copynumber: 13.5 Consensus size: 6
32617044 CTTTGTTTAT
* * ** * *
32617054 TTTAAA TTTATAA --TAAT TTTAAA TTTGAA GATAAA TTTAAA CTCAAA
1 TTTAAA TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
32617101 -TTAAA TTTAAA TTTAAA -ATAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT
32617132 TAAAACAAAT
Statistics
Matches: 54, Mismatches: 13, Indels: 10
0.70 0.17 0.13
Matches are distributed among these distances:
4 1 0.02
5 10 0.19
6 41 0.76
7 2 0.04
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (6 bp):
TTTAAA
Found at i:32617112 original size:23 final size:23
Alignment explanation
Indices: 32617085--32617131 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
32617075 AATTTGAAGA
*
32617085 TAAATTTAAACTCAAA-TTAAATT
1 TAAATTTAAAAT-AAATTTAAATT
32617108 TAAATTTAAAATAAATTTAAATT
1 TAAATTTAAAATAAATTTAAATT
32617131 T
1 T
32617132 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 19 0.86
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
TAAATTTAAAATAAATTTAAATT
Found at i:32617818 original size:19 final size:19
Alignment explanation
Indices: 32617796--32617840 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
32617786 TTATATTAGG
32617796 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
32617815 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
32617834 ATTTAAT
1 ATTTAAT
32617841 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:32629220 original size:36 final size:36
Alignment explanation
Indices: 32629173--32629241 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
32629163 TAATGAAGAG
* *
32629173 AATCTGAGTGGGATTAGTATTGAATTGAAAGATCAA
1 AATCTAAGTGGGATTAGTATTCAATTGAAAGATCAA
* * *
32629209 AATCTAAGTGGGCTTGGTATTCAGTTGAAAGAT
1 AATCTAAGTGGGATTAGTATTCAATTGAAAGAT
32629242 AACATTGATC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (36 bp):
AATCTAAGTGGGATTAGTATTCAATTGAAAGATCAA
Found at i:32638762 original size:24 final size:25
Alignment explanation
Indices: 32638730--32638780 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
32638720 ATGGCAAAGA
32638730 AAAAGAATA-TTTTTTTGTTGCAGC
1 AAAAGAATATTTTTTTTGTTGCAGC
32638754 AAAAGAATATTTTTTTTGTTGCAGC
1 AAAAGAATATTTTTTTTGTTGCAGC
32638779 AA
1 AA
32638781 CAATGGGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (25 bp):
AAAAGAATATTTTTTTTGTTGCAGC
Found at i:32640107 original size:38 final size:38
Alignment explanation
Indices: 32640056--32640167 Score: 149
Period size: 38 Copynumber: 3.0 Consensus size: 38
32640046 TATCTATAGG
* * *
32640056 CATGAAAATGGTTATCTAGAGGCTCTTTGGAGTGACAT
1 CATGAAAATGGTTATCTACAGGCTCTTTGGAGCGACAC
*
32640094 CATGAAAATGGTTATCTACAGGCTTTTTGGAGCGACAC
1 CATGAAAATGGTTATCTACAGGCTCTTTGGAGCGACAC
* *
32640132 CATGAAAAT-G--ATCTCCAGGCTCTATGGAGCGACAC
1 CATGAAAATGGTTATCTACAGGCTCTTTGGAGCGACAC
32640167 C
1 C
32640168 TCGAAAGAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
35 23 0.34
37 1 0.01
38 43 0.64
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (38 bp):
CATGAAAATGGTTATCTACAGGCTCTTTGGAGCGACAC
Found at i:32645171 original size:22 final size:22
Alignment explanation
Indices: 32645141--32645183 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
32645131 TCAATGATGG
* *
32645141 TAATACTAAAATATATCTTAAT
1 TAATACTAAAAAATATATTAAT
*
32645163 TAATTCTAAAAAATATATTAA
1 TAATACTAAAAAATATATTAA
32645184 ATTTTTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
TAATACTAAAAAATATATTAAT
Found at i:32645887 original size:12 final size:12
Alignment explanation
Indices: 32645866--32645908 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
32645856 CAAGTAAGTT
32645866 CCCCCAATCCCCA
1 CCCCC-ATCCCCA
32645879 CCCCCATCCCCA
1 CCCCCATCCCCA
*
32645891 CCCCCACCCCCA
1 CCCCCATCCCCA
*
32645903 CTCCCA
1 CCCCCA
32645909 AATTCAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
12 23 0.82
13 5 0.18
ACGTcount: A:0.19, C:0.74, G:0.00, T:0.07
Consensus pattern (12 bp):
CCCCCATCCCCA
Found at i:32645889 original size:6 final size:6
Alignment explanation
Indices: 32645874--32645908 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
32645864 TTCCCCCAAT
* *
32645874 CCCCAC CCCCAT CCCCAC CCCCAC CCCCAC TCCCA
1 CCCCAC CCCCAC CCCCAC CCCCAC CCCCAC CCCCA
32645909 AATTCAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.17, C:0.77, G:0.00, T:0.06
Consensus pattern (6 bp):
CCCCAC
Found at i:32650499 original size:15 final size:15
Alignment explanation
Indices: 32650479--32650534 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
32650469 ATTCAGTATT
*
32650479 AATATTTTAATAATG
1 AATATTTTAATAATA
*
32650494 AATATTTATTAAATTATA
1 AATA-TT-TT-AATAATA
*
32650512 AATATATTAATAATA
1 AATATTTTAATAATA
32650527 AATATTTT
1 AATATTTT
32650535 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
15 17 0.52
16 4 0.12
17 3 0.09
18 9 0.27
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:32653645 original size:23 final size:23
Alignment explanation
Indices: 32653616--32653659 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
32653606 TTTTTAACAA
*
32653616 ATATATAAAAATTTCTAGTTTTT
1 ATATATAAAAATTTATAGTTTTT
* *
32653639 ATATATATATATTTATAGTTT
1 ATATATAAAAATTTATAGTTT
32653660 AATTTCTAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (23 bp):
ATATATAAAAATTTATAGTTTTT
Found at i:32654616 original size:18 final size:17
Alignment explanation
Indices: 32654576--32654620 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
32654566 AACATTATTT
32654576 TAATATTTATATTAGAG
1 TAATATTTATATTAGAG
*
32654593 TAATATTATATATT-TAG
1 TAATATT-TATATTAGAG
32654610 TATATATTTAT
1 TA-ATATTTAT
32654621 TTATTAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (17 bp):
TAATATTTATATTAGAG
Found at i:32656944 original size:17 final size:18
Alignment explanation
Indices: 32656922--32656962 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
32656912 GAAATTTAGC
32656922 TAAAAA-CTATTGAAACA
1 TAAAAACCTATTGAAACA
* *
32656939 TAAAAACCTTTTGAAGCA
1 TAAAAACCTATTGAAACA
32656957 TAAAAA
1 TAAAAA
32656963 TTTCATAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.56, C:0.12, G:0.07, T:0.24
Consensus pattern (18 bp):
TAAAAACCTATTGAAACA
Found at i:32661407 original size:36 final size:36
Alignment explanation
Indices: 32661339--32661619 Score: 364
Period size: 36 Copynumber: 7.8 Consensus size: 36
32661329 TTCAAAGGAA
* * * *
32661339 GCATACGTCTTGCTTAAAGCCTATTGCTATGAAGTT
1 GCATACGTCTCGGTTAGAGCGTATTGCTATGAAGTT
* *
32661375 GCAAACTTCTCGGTTAGAGCGTATTGCTATGAAGTT
1 GCATACGTCTCGGTTAGAGCGTATTGCTATGAAGTT
* * * *
32661411 GCATACATCTCGATTAGAGCATGTTGCTATGAAGTT
1 GCATACGTCTCGGTTAGAGCGTATTGCTATGAAGTT
* *
32661447 GCATACGTCTCAGTTAGAGCGTATTGCTATGATGTT
1 GCATACGTCTCGGTTAGAGCGTATTGCTATGAAGTT
* * * *
32661483 GCATACGTCTCGATTAGAGCATATTGCTAAGATGTT
1 GCATACGTCTCGGTTAGAGCGTATTGCTATGAAGTT
32661519 GCATACGTCTCGGTTAGAGCGTATTGCTATGAAGTT
1 GCATACGTCTCGGTTAGAGCGTATTGCTATGAAGTT
* *
32661555 GCATACGTCTTGGTTAGAGCGTATTGCTATGAATTT
1 GCATACGTCTCGGTTAGAGCGTATTGCTATGAAGTT
* * * *
32661591 GCTTATGTCTCAGTTAGAGCGTAATGCTA
1 GCATACGTCTCGGTTAGAGCGTATTGCTA
32661620 AGTGATTGCT
Statistics
Matches: 213, Mismatches: 32, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 213 1.00
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (36 bp):
GCATACGTCTCGGTTAGAGCGTATTGCTATGAAGTT
Found at i:32661530 original size:108 final size:108
Alignment explanation
Indices: 32661360--32661649 Score: 361
Period size: 108 Copynumber: 2.7 Consensus size: 108
32661350 GCTTAAAGCC
* * * * * * * *
32661360 TATTGCTATGAAGTTGCAAACTTCTCGGTTAGAGCGTATTGCTATGAAGTTGCATACATCTCGAT
1 TATTGCTATGATGTTGCATACGTCTCGATTAGAGCGTATTGCTAAGATGTTGCATACGTCTCGGT
*
32661425 TAGAGCATGTTGCTATGAAGTTGCATACGTCTCAGTTAGAGCG
66 TAGAGCATATTGCTATGAAGTTGCATACGTCTCAGTTAGAGCG
*
32661468 TATTGCTATGATGTTGCATACGTCTCGATTAGAGCATATTGCTAAGATGTTGCATACGTCTCGGT
1 TATTGCTATGATGTTGCATACGTCTCGATTAGAGCGTATTGCTAAGATGTTGCATACGTCTCGGT
* **
32661533 TAGAGCGTATTGCTATGAAGTTGCATACGTCTTGGTTAGAGCG
66 TAGAGCATATTGCTATGAAGTTGCATACGTCTCAGTTAGAGCG
* * * * * *
32661576 TATTGCTATGAAT-TTGCTTATGTCTC-AGTTAGAGCGTAATGCTAAG-TGATTGCTTATGTCTT
1 TATTGCTATG-ATGTTGCATACGTCTCGA-TTAGAGCGTATTGCTAAGATG-TTGCATACGTCTC
32661638 GGTTAGAGCATA
63 GGTTAGAGCATA
32661650 AGGTTATTTT
Statistics
Matches: 158, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
107 3 0.02
108 153 0.97
109 2 0.01
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (108 bp):
TATTGCTATGATGTTGCATACGTCTCGATTAGAGCGTATTGCTAAGATGTTGCATACGTCTCGGT
TAGAGCATATTGCTATGAAGTTGCATACGTCTCAGTTAGAGCG
Found at i:32663331 original size:16 final size:16
Alignment explanation
Indices: 32663310--32663372 Score: 74
Period size: 16 Copynumber: 3.9 Consensus size: 16
32663300 CACTGGAATT
32663310 GAATATGGCTGTAATG
1 GAATATGGCTGTAATG
*
32663326 GAATATGGCTGTAATA
1 GAATATGGCTGTAATG
*
32663342 GAATA-GAGCTGTAGTG
1 GAATATG-GCTGTAATG
* *
32663358 GAATAAGGTTGTAAT
1 GAATATGGCTGTAAT
32663373 CAATAATTCA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
15 1 0.03
16 38 0.95
17 1 0.03
ACGTcount: A:0.35, C:0.05, G:0.30, T:0.30
Consensus pattern (16 bp):
GAATATGGCTGTAATG
Found at i:32663672 original size:59 final size:58
Alignment explanation
Indices: 32663550--32663673 Score: 153
Period size: 59 Copynumber: 2.1 Consensus size: 58
32663540 TAATAGAATT
* * * *
32663550 ATTATTAAATATAATTTCATAAAAATGATAATAAATAATTTAATCCTTTTAAAATAGTT
1 ATTATTAAATATAATTTAATAAAAATAATAATAAATAATTTAATCATTTT-AAATAGTA
*
32663609 ATTATTAAATATAATTTAATAAAAATAATAATATATAATTTAATAACATTCTT-AATA-TA
1 ATTATTAAATATAATTTAATAAAAATAATAATAAATAATTTAAT--CATT-TTAAATAGTA
32663668 ATTATT
1 ATTATT
32663674 TTTATATTAA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
59 48 0.84
60 4 0.07
61 3 0.05
62 2 0.04
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.44
Consensus pattern (58 bp):
ATTATTAAATATAATTTAATAAAAATAATAATAAATAATTTAATCATTTTAAATAGTA
Found at i:32689191 original size:873 final size:873
Alignment explanation
Indices: 32687506--32689213 Score: 2583
Period size: 873 Copynumber: 2.0 Consensus size: 873
32687496 ACCCTACTTA
* * * *
32687506 ATCCACAGGCTCGATTTTATTTTTAACGACTATGACTAAAGATCGGTACCATAATGTTATGCTAA
1 ATCCACAGGCCCGATTTTATTTTTAACAACTACGACCAAAGATCGGTACCATAATGTTATGCTAA
* * *
32687571 AACGTAATATTCACTCCGAATAGGGTCTCCAACCATCTCCATATCAAACCTTGGGGAAACAAATT
66 AACGTAATATTCACTCCGAACAAGGTCTCCAACCATCTCCACATCAAACCTTGGGGAAACAAATT
** * * ** * * **
32687636 CACCGAACCATCAGTTGCCTTAGTTGGGAATATTTTTGTGACCATCTTTCTGGCTACTCTCCCAC
131 CACCGAACCATCAGCCGCCTCAGATGGGAATATTTTTACGACCATCGTCCTACCTACTCTCCCAC
* *
32687701 AATGGTGAGGGAGTTTTATGCGAATTTAGTGGATCAGGAGTAGGAGTTTATCTTTGTACGAGAAG
196 AATGGTGAGGGAGTTTTATGCGAATTTAGTGGATCAGGAGCAGGAGTTTATCTTTATACGAGAAG
* * * * * *
32687766 GGCTAGTTCCATGGAGTGTTGCGTAGATCAACGTTCTGTTGACAATTCCAGAATGAGTAGACAAT
261 GGCTAGTTCCATGGAGTGCTGCGCAGATCAACGTACTATTGACAATTCCAAAATGAGTAGACAAC
32687831 CATACACCCTTTATGCACCATTTGGATGATGATTGTTTGGCCCAAATGATGAACAACCTCTACAT
326 CATACACCCTTTATGCACCATTTGGATGATGATTGTTTGGCCCAAATGATGAACAACCTCTACAT
* * * * *
32687896 CGATGGCGCTACATGGATGGGTAATGGGTTTCACAATTATACAATGCATAGGCAATACCTTTCAA
391 CGATGGCGCTACATGGACGAGCAATGGGTTTCACAATTATACAATGCATAAGCAATACCTTACAA
* *
32687961 TCTTTTGCAAGGTATGGTTTCATTTCATCAATAGTCGTGTTATGCCTTCTACCCACAGCACTACG
456 TCTTTTGCAAGGTATGGTTTCATTTCATCAACAGTCGTGTTATGCCTTCTACCCACAGCACTAAG
* * * *
32688026 TTCACATTGGATCGTATGTGTATGCTGCATTCCATTCTACACCACTGACACATCGACATTGGGGA
521 CTCACATTGGACCGTATGTGTATGCTGCATTCCATTCTACACCACCGACACATCGACATTAGGGA
* * * * **
32688091 GCTTATACATGCCGAGATCGTAGAAGCTGCACGAAAGCAAACTGGTATCCTTCATTTTCCCTCTC
586 GCTCATACATGCCCAAATCGCAGAAGCTGCACGAAAGCAAACTCATATCCTTCATTTTCCCTCTC
32688156 TTATTATACTACTCTATCAACATAAGGGCATTGTACCCAAAGATGATGAGGAGGTCCTAGACAAT
651 TTATTATACTACTCTATCAACATAAGGGCATTGTACCCAAAGATGATGAGGAGGTCCTAGACAAT
*
32688221 AAAGGACCAATTAATGATATTTCTGTTGAGAGGATGAAACGAGGCCAAGACACCCTAGTAGCCAA
716 AAAGGACCAATCAATGATATTTCTGTTGAGAGGATGAAACGAGGCCAAGACACCCTAGTAGCCAA
* * *
32688286 AAAGATCTTCAAGAAGAGGGACAAAGGAAAGGGTAAGAAGAAGGCTAACAAAACTACTCCTACTG
781 AAAGATCTCCAAGAAGAGAGACAAAAGAAAGGGTAAGAAGAAGGCTAACAAAACTACTCCTACTG
32688351 TGGCTCCATCCACGGTACCACAGCCTTC
846 TGGCTCCATCCACGGTACCACAGCCTTC
* *
32688379 ATCCACAGGCCCGATTTTGTTTTTAACAACTACGACCAAAGATCGGTACCATATTGTTATGCTAA
1 ATCCACAGGCCCGATTTTATTTTTAACAACTACGACCAAAGATCGGTACCATAATGTTATGCTAA
* ** * *** * *
32688444 AATGTAATATTCACTTTGAACAAGGTTTCCAATTGTCTCTACATCAAACCTTGGGGAAAGAAATT
66 AACGTAATATTCACTCCGAACAAGGTCTCCAACCATCTCCACATCAAACCTTGGGGAAACAAATT
32688509 CACCGAACCATCAGCCGCCTCAGATGGGAATATTTTTACGACCATCGTCCTACCTACTCTCCCAC
131 CACCGAACCATCAGCCGCCTCAGATGGGAATATTTTTACGACCATCGTCCTACCTACTCTCCCAC
* *
32688574 AATGGTGTGGGAGTTTTATGCGAATTTGGTGGATCAGGAGCAGGAGTTTATCTTTATACGAGAAG
196 AATGGTGAGGGAGTTTTATGCGAATTTAGTGGATCAGGAGCAGGAGTTTATCTTTATACGAGAAG
* * *
32688639 GGCTAGTTCCATGGAGTGCTGCGCAGATCAGCGTACTATTGAGAATTCCAAAATGAGTAGACGAC
261 GGCTAGTTCCATGGAGTGCTGCGCAGATCAACGTACTATTGACAATTCCAAAATGAGTAGACAAC
* * *
32688704 CATACACCCTTTATGCGCCATTTGGATGATGATTGTTTGGCCCAAATGATGAACGACCTCTGCAT
326 CATACACCCTTTATGCACCATTTGGATGATGATTGTTTGGCCCAAATGATGAACAACCTCTACAT
* * * * **
32688769 CGATGGTGCTACATGGGCGAGCAATGGGTTTCATAATTATACAATTCATAAGCGGTACCTTACAA
391 CGATGGCGCTACATGGACGAGCAATGGGTTTCACAATTATACAATGCATAAGCAATACCTTACAA
*
32688834 TCTTTTGCAAGGTATGGTTTCATTTCATCAACAGTCGTGTTATGCCTTCTACCCATAGCACTATA
456 TCTTTTGCAAGGTATGGTTTCATTTCATCAACAGTCGTGTTATGCCTTCTACCCACAGCACTA-A
* * **
32688899 GCT-ATATTGGACCGTATGTGTATGTTGCATTCCATTCTGTACCACCGACACATCGACATTAGGG
520 GCTCACATTGGACCGTATGTGTATGCTGCATTCCATTCTACACCACCGACACATCGACATTAGGG
* *
32688963 AGCTCATACATGCCCAAATCGCAGAAGCTGCACGAAAGTAAATTCATATCCTTTC-TTTTCCCTC
585 AGCTCATACATGCCCAAATCGCAGAAGCTGCACGAAAGCAAACTCATATCC-TTCATTTTCCCTC
* * *
32689027 TCTTATTATGCTACTCTGTCAACATAAGGGCATTGTACCCAAAGATGATGAGGAGGTCCTGGACA
649 TCTTATTATACTACTCTATCAACATAAGGGCATTGTACCCAAAGATGATGAGGAGGTCCTAGACA
* * * * *
32689092 ATAAAGGACCAATCAATGATATTTCTGTTGAGAGTATGAAACGGGGCCAAGACACTCTAGTGGGC
714 ATAAAGGACCAATCAATGATATTTCTGTTGAGAGGATGAAACGAGGCCAAGACACCCTAGTAGCC
* * *
32689157 AAAGAGATCTCCAAGAAGAGAGACAAAAGAAAGGGTAAGAAGAAGGCTGACAGAACT
779 AAAAAGATCTCCAAGAAGAGAGACAAAAGAAAGGGTAAGAAGAAGGCTAACAAAACT
32689214 GATGCACGGA
Statistics
Matches: 744, Mismatches: 89, Indels: 4
0.89 0.11 0.00
Matches are distributed among these distances:
873 739 0.99
874 5 0.01
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (873 bp):
ATCCACAGGCCCGATTTTATTTTTAACAACTACGACCAAAGATCGGTACCATAATGTTATGCTAA
AACGTAATATTCACTCCGAACAAGGTCTCCAACCATCTCCACATCAAACCTTGGGGAAACAAATT
CACCGAACCATCAGCCGCCTCAGATGGGAATATTTTTACGACCATCGTCCTACCTACTCTCCCAC
AATGGTGAGGGAGTTTTATGCGAATTTAGTGGATCAGGAGCAGGAGTTTATCTTTATACGAGAAG
GGCTAGTTCCATGGAGTGCTGCGCAGATCAACGTACTATTGACAATTCCAAAATGAGTAGACAAC
CATACACCCTTTATGCACCATTTGGATGATGATTGTTTGGCCCAAATGATGAACAACCTCTACAT
CGATGGCGCTACATGGACGAGCAATGGGTTTCACAATTATACAATGCATAAGCAATACCTTACAA
TCTTTTGCAAGGTATGGTTTCATTTCATCAACAGTCGTGTTATGCCTTCTACCCACAGCACTAAG
CTCACATTGGACCGTATGTGTATGCTGCATTCCATTCTACACCACCGACACATCGACATTAGGGA
GCTCATACATGCCCAAATCGCAGAAGCTGCACGAAAGCAAACTCATATCCTTCATTTTCCCTCTC
TTATTATACTACTCTATCAACATAAGGGCATTGTACCCAAAGATGATGAGGAGGTCCTAGACAAT
AAAGGACCAATCAATGATATTTCTGTTGAGAGGATGAAACGAGGCCAAGACACCCTAGTAGCCAA
AAAGATCTCCAAGAAGAGAGACAAAAGAAAGGGTAAGAAGAAGGCTAACAAAACTACTCCTACTG
TGGCTCCATCCACGGTACCACAGCCTTC
Found at i:32690234 original size:17 final size:17
Alignment explanation
Indices: 32690212--32690249 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
32690202 AGTTTTCATA
*
32690212 CATTTTTATTGT-GTCTG
1 CATTTTAATTGTCGT-TG
32690229 CATTTTAATTGTCGTTG
1 CATTTTAATTGTCGTTG
32690246 CATT
1 CATT
32690250 CATTTTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.16, C:0.13, G:0.16, T:0.55
Consensus pattern (17 bp):
CATTTTAATTGTCGTTG
Found at i:32695539 original size:20 final size:21
Alignment explanation
Indices: 32695500--32695552 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
32695490 TATCCAAAAG
32695500 TATTAA-AAAATAAAATATTA
1 TATTAATAAAATAAAATATTA
*
32695520 TATTAATAAAATTAAA-ATTA
1 TATTAATAAAATAAAATATTA
*
32695540 -AATAAT-AAATAAA
1 TATTAATAAAATAAA
32695553 TTTTCAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 6 0.21
19 5 0.17
20 10 0.34
21 8 0.28
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
TATTAATAAAATAAAATATTA
Found at i:32696953 original size:27 final size:27
Alignment explanation
Indices: 32696913--32696967 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
32696903 TCATTGACTG
*
32696913 AGTCGGGTTAAAGTTGGGCCGATGTAA
1 AGTCGAGTTAAAGTTGGGCCGATGTAA
* *
32696940 AGTCGAGTTTAAGTTGGGTCGATGTAA
1 AGTCGAGTTAAAGTTGGGCCGATGTAA
32696967 A
1 A
32696968 ATTTTAGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.27, C:0.09, G:0.35, T:0.29
Consensus pattern (27 bp):
AGTCGAGTTAAAGTTGGGCCGATGTAA
Found at i:32697367 original size:21 final size:22
Alignment explanation
Indices: 32697329--32697369 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32697319 TATAATAGCA
32697329 AAAATGACAGCAAAACAACAAT
1 AAAATGACAGCAAAACAACAAT
*
32697351 AAAATGATAGC-AAACAACA
1 AAAATGACAGCAAAACAACA
32697370 CTAGGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.63, C:0.17, G:0.10, T:0.10
Consensus pattern (22 bp):
AAAATGACAGCAAAACAACAAT
Found at i:32697885 original size:11 final size:11
Alignment explanation
Indices: 32697869--32697893 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32697859 TGCTCTTATT
32697869 AAAAATTATAA
1 AAAAATTATAA
32697880 AAAAATTATAA
1 AAAAATTATAA
32697891 AAA
1 AAA
32697894 TAAAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:32697963 original size:45 final size:45
Alignment explanation
Indices: 32697864--32697966 Score: 115
Period size: 45 Copynumber: 2.3 Consensus size: 45
32697854 AGCCCTGCTC
32697864 TTATTAAAAATTATAAAAAAATTATAAAAATAAAAAATAATAACT
1 TTATTAAAAATTATAAAAAAATTATAAAAATAAAAAATAATAACT
* * *
32697909 TT-TAGAAAAATTAT-TAAAATTTAATAAAAATATAAAAATTAA-AA-T
1 TTAT-TAAAAATTATAAAAAAATT-ATAAAAATA-AAAAA-TAATAACT
32697954 TTATTAAAAATTA
1 TTATTAAAAATTA
32697967 GATTGTTTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
44 7 0.14
45 31 0.63
46 8 0.16
47 3 0.06
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (45 bp):
TTATTAAAAATTATAAAAAAATTATAAAAATAAAAAATAATAACT
Found at i:32698015 original size:39 final size:37
Alignment explanation
Indices: 32697958--32698038 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 37
32697948 TAAAATTTAT
*
32697958 TAAAAATTAGATTGTTTTATAAAAATCGTAAAAAAAATA
1 TAAAAATTAAATTGTTTTATAAAAATC--AAAAAAAATA
* *
32697997 TAAAAATTGAAATT-TTTTATAGAAATCATAAAAAATA
1 TAAAAATT-AAATTGTTTTATAAAAATCAAAAAAAATA
32698034 TAAAA
1 TAAAA
32698039 TGCATAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 14 0.37
39 20 0.53
40 4 0.11
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.33
Consensus pattern (37 bp):
TAAAAATTAAATTGTTTTATAAAAATCAAAAAAAATA
Found at i:32698047 original size:17 final size:18
Alignment explanation
Indices: 32698014--32698049 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
32698004 TGAAATTTTT
32698014 TATAGAAATCATAAAAAA
1 TATAGAAATCATAAAAAA
32698032 TATA-AAATGCATAAAAAA
1 TATAGAAAT-CATAAAAAA
32698050 GTTCCTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.22
Consensus pattern (18 bp):
TATAGAAATCATAAAAAA
Found at i:32698283 original size:20 final size:20
Alignment explanation
Indices: 32698225--32698394 Score: 85
Period size: 21 Copynumber: 8.7 Consensus size: 20
32698215 TGGTACAATA
*
32698225 ATTTTTATAATTTTTTTTACG
1 ATTTTTATAA-TTTTCTTACG
**
32698246 AAATTTAT-A-TTTCTTTAC-
1 ATTTTTATAATTTTC-TTACG
32698264 ATTTTGTATAATTTTCTTACG
1 ATTTT-TATAATTTTCTTACG
* *
32698285 ATTTTATAAAATTTT-ATA--
1 ATTTT-TATAATTTTCTTACG
*
32698303 ATTTTT-T-ATATTTC-TA-T
1 ATTTTTATAAT-TTTCTTACG
*
32698320 ATATTTTATAATTTTTTTACG
1 AT-TTTTATAATTTTCTTACG
** *
32698341 ATTTTTATAAAATT-TTACA
1 ATTTTTATAATTTTCTTACG
*
32698360 ATTTTTTATATATTTTTTTACG
1 A-TTTTTATA-ATTTTCTTACG
32698382 ATTTTTA-AATTTT
1 ATTTTTATAATTTT
32698395 TTTTTCTAAT
Statistics
Matches: 116, Mismatches: 17, Indels: 34
0.69 0.10 0.20
Matches are distributed among these distances:
15 2 0.02
16 5 0.04
17 3 0.03
18 15 0.13
19 21 0.18
20 31 0.27
21 34 0.29
22 5 0.04
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (20 bp):
ATTTTTATAATTTTCTTACG
Found at i:32698309 original size:10 final size:10
Alignment explanation
Indices: 32698286--32698377 Score: 59
Period size: 10 Copynumber: 9.4 Consensus size: 10
32698276 TTTCTTACGA
**
32698286 TTTTATAAAA
1 TTTTATAATT
32698296 TTTTATAATT
1 TTTTATAATT
32698306 TTTTAT-A-T
1 TTTTATAATT
* *
32698314 TTCTAT-ATA
1 TTTTATAATT
32698323 TTTTATAATT
1 TTTTATAATT
32698333 TTTT-TACGA-T
1 TTTTATA--ATT
**
32698343 TTTTATAAAA
1 TTTTATAATT
*
32698353 TTTTACAATT
1 TTTTATAATT
32698363 TTTTATATATT
1 TTTTATA-ATT
32698374 TTTT
1 TTTT
32698378 TACGATTTTT
Statistics
Matches: 64, Mismatches: 11, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
8 7 0.11
9 9 0.14
10 38 0.59
11 10 0.16
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:32698355 original size:57 final size:58
Alignment explanation
Indices: 32698249--32698370 Score: 185
Period size: 57 Copynumber: 2.1 Consensus size: 58
32698239 TTTTACGAAA
* *
32698249 TTTATATTTCTTTACATTTTGTATAATTTTCTTACGATTTTATAAAATTTTATAATTT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGATTTTATAAAATTTTACAATTT
* *
32698307 TTTATATTTCTATATA-TTT-TATAATTTTTTTACGATTTTTATAAAATTTTACAATTT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGA-TTTTATAAAATTTTACAATTT
32698364 TTTATAT
1 TTTATAT
32698371 ATTTTTTTAC
Statistics
Matches: 59, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
56 15 0.25
57 30 0.51
58 14 0.24
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.61
Consensus pattern (58 bp):
TTTATATTTCTATACATTTTGTATAATTTTCTTACGATTTTATAAAATTTTACAATTT
Found at i:32699098 original size:24 final size:23
Alignment explanation
Indices: 32699071--32699118 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
32699061 TTGTTGTTGC
* *
32699071 TAAATTAGAGGTATAAGTTGTTTT
1 TAAA-TAGAGATATAAGTCGTTTT
*
32699095 TAAATAGAGATTTAAGTCGTTTT
1 TAAATAGAGATATAAGTCGTTTT
32699118 T
1 T
32699119 CAAAAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (23 bp):
TAAATAGAGATATAAGTCGTTTT
Found at i:32704228 original size:3 final size:3
Alignment explanation
Indices: 32704220--32704245 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32704210 ATTCCAACTC
32704220 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
32704246 TGTTGATCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:32704595 original size:89 final size:88
Alignment explanation
Indices: 32704492--32704688 Score: 254
Period size: 89 Copynumber: 2.2 Consensus size: 88
32704482 CTCAAACTTA
*** *
32704492 AAAATAAACAATTAAGTCCCT-CTTTTTTTTTGCACTCAATTGAGCACTTGAATTTTCAAAATGC
1 AAAA-AAACAATTAAGTCCCTGCTTTTTTTCCCCACTCAATTGAGCACTTGAACTTTCAAAATGC
*
32704556 ATAAAAAAGACACTCAAACTTCTTC
65 A-AAAAAAGACACTCAAAATTCTTC
* * *
32704581 AAAAAGAACAATTAAGCCCCTGCTTTTTTTCCCCACTCAATTGAGTATTTGAACTTTCAAAATGC
1 AAAAA-AACAATTAAGTCCCTGCTTTTTTTCCCCACTCAATTGAGCACTTGAACTTTCAAAATGC
* *
32704646 AAAAAAAGACCCTCAAAATTTTTC
65 AAAAAAAGACACTCAAAATTCTTC
*
32704670 AAAAAAGCAATTAA-TCCCT
1 AAAAAAACAATTAAGTCCCT
32704689 TGCTCTTATT
Statistics
Matches: 94, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
87 4 0.04
88 9 0.10
89 43 0.46
90 38 0.40
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (88 bp):
AAAAAAACAATTAAGTCCCTGCTTTTTTTCCCCACTCAATTGAGCACTTGAACTTTCAAAATGCA
AAAAAAGACACTCAAAATTCTTC
Found at i:32704743 original size:17 final size:17
Alignment explanation
Indices: 32704704--32704766 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 17
32704694 TTATTAAAAA
*
32704704 TTAGAAAAAAA-AAA-C
1 TTAGAAAAAAATAAATT
*
32704719 TTATAAAAAAATAAATT
1 TTAGAAAAAAATAAATT
*
32704736 TTAGAAAAATTATTAAATT
1 TTAGAAAAA--AATAAATT
*
32704755 TTA-ATAAAAATA
1 TTAGAAAAAAATA
32704767 TAAAAACTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
15 10 0.26
16 6 0.16
17 8 0.21
18 4 0.11
19 10 0.26
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (17 bp):
TTAGAAAAAAATAAATT
Found at i:32704953 original size:105 final size:108
Alignment explanation
Indices: 32704740--32704971 Score: 346
Period size: 106 Copynumber: 2.1 Consensus size: 108
32704730 TAAATTTTAG
* * *
32704740 AAAAATTATTAAATTTTAATAAAAATATAAAAACTTTAAAATTTATTAAAAAATCAAACTTTTTA
1 AAAAATTA-TAAAATTTATTAAAAA-AT-CAAACTTTAAAATTTATTAAAAAATC--ACTTTTTA
32704805 TAAAAATTGTAAAAAATAAAAAATTATAAAATTTTTATAGAAATCATA
61 TAAAAATTGTAAAAAATAAAAAATTATAAAATTTTTATAGAAATCATA
*
32704853 AAAAACTT-TAAAATTTATTAAAAAATCAAACTTTAAAATTTATTAAAAAA-C-TTTTTTATAAA
1 AAAAA-TTATAAAATTTATTAAAAAATCAAACTTTAAAATTTATTAAAAAATCACTTTTTATAAA
32704915 AATTGTAAAAAATAAAAAATTAT-AAATTTTTATAGAAATCATA
65 AATTGTAAAAAATAAAAAATTATAAAATTTTTATAGAAATCATA
32704958 AAAAATTATAAAAT
1 AAAAATTATAAAAT
32704972 GCATCGAAAA
Statistics
Matches: 113, Mismatches: 4, Indels: 12
0.88 0.03 0.09
Matches are distributed among these distances:
104 2 0.02
105 31 0.27
106 33 0.29
109 1 0.01
110 23 0.20
111 2 0.02
112 14 0.12
113 5 0.04
114 2 0.02
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (108 bp):
AAAAATTATAAAATTTATTAAAAAATCAAACTTTAAAATTTATTAAAAAATCACTTTTTATAAAA
ATTGTAAAAAATAAAAAATTATAAAATTTTTATAGAAATCATA
Found at i:32704982 original size:105 final size:108
Alignment explanation
Indices: 32704770--32704984 Score: 330
Period size: 105 Copynumber: 2.0 Consensus size: 108
32704760 AAAAATATAA
32704770 AAACTTTAAAATTTATTAAAAAATCAAACTTTTTATAAAAATTGTAAAAAATAAAAAATTATAAA
1 AAACTTTAAAATTTATTAAAAAATC--ACTTTTTATAAAAATTGTAAAAAATAAAAAATTATAAA
** *
32704835 ATTTTTATAGAAATCATAAAAAACTTTAAAATTTATTAAAAAATC
64 ATTTTTATAGAAATCATAAAAAACTTTAAAATGCATCAAAAAATC
*
32704880 AAACTTTAAAATTTATTAAAAAA-C-TTTTTTATAAAAATTGTAAAAAATAAAAAATTAT-AAAT
1 AAACTTTAAAATTTATTAAAAAATCACTTTTTATAAAAATTGTAAAAAATAAAAAATTATAAAAT
*
32704942 TTTTATAGAAATCATAAAAAA-TTATAAAATGCATCGAAAAATC
66 TTTTATAGAAATCATAAAAAACTT-TAAAATGCATCAAAAAATC
32704985 CCTTTAACAA
Statistics
Matches: 99, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
104 2 0.02
105 40 0.40
106 33 0.33
109 1 0.01
110 23 0.23
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.35
Consensus pattern (108 bp):
AAACTTTAAAATTTATTAAAAAATCACTTTTTATAAAAATTGTAAAAAATAAAAAATTATAAAAT
TTTTATAGAAATCATAAAAAACTTTAAAATGCATCAAAAAATC
Found at i:32705403 original size:10 final size:10
Alignment explanation
Indices: 32705390--32705461 Score: 51
Period size: 10 Copynumber: 7.5 Consensus size: 10
32705380 TTTCTACATA
32705390 TTTATAATTT
1 TTTATAATTT
** *
32705400 TTTACGA-CT
1 TTTATAATTT
**
32705409 TTTATAAAAT
1 TTTATAATTT
*
32705419 TTTACAA-TT
1 TTTATAATTT
32705428 TTTAT-ATTT
1 TTTATAATTT
*
32705437 TTTCTAATTT
1 TTTATAATTT
*
32705447 TTAATAATTT
1 TTTATAATTT
32705457 TTTAT
1 TTTAT
32705462 TAAAATTTAA
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
8 1 0.02
9 17 0.37
10 28 0.61
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (10 bp):
TTTATAATTT
Found at i:32705414 original size:19 final size:19
Alignment explanation
Indices: 32705390--32705460 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 19
32705380 TTTCTACATA
*
32705390 TTTATAATTTTTTACGACT
1 TTTATAATTTTTTACAACT
** *
32705409 TTTATAAAATTTTACAATT
1 TTTATAATTTTTTACAACT
*
32705428 TTTAT-ATTTTTT-CTAATT
1 TTTATAATTTTTTAC-AACT
32705446 TTTAATAATTTTTTA
1 TTT-ATAATTTTTTA
32705461 TTAAAATTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.02
18 12 0.29
19 22 0.52
20 7 0.17
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (19 bp):
TTTATAATTTTTTACAACT
Found at i:32705414 original size:56 final size:57
Alignment explanation
Indices: 32705353--32705460 Score: 157
Period size: 56 Copynumber: 1.9 Consensus size: 57
32705343 TTCTTACAAG
* *
32705353 TTTATAAAATTTTATAATTTTTTTA-TATTTCTACATATTT-ATAATTTTTTACGACT
1 TTTATAAAATTTTACAATTTTTATATTATTTCTA-ATATTTAATAATTTTTTACGACT
* *
32705409 TTTATAAAATTTTACAATTTTTATATTTTTTCTAATTTTTAATAATTTTTTA
1 TTTATAAAATTTTACAATTTTTATATTATTTCTAATATTTAATAATTTTTTA
32705461 TTAAAATTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
56 28 0.61
57 18 0.39
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (57 bp):
TTTATAAAATTTTACAATTTTTATATTATTTCTAATATTTAATAATTTTTTACGACT
Found at i:32708095 original size:9 final size:9
Alignment explanation
Indices: 32708057--32708139 Score: 59
Period size: 9 Copynumber: 9.6 Consensus size: 9
32708047 AGATATAGCA
32708057 AAAAATTA-
1 AAAAATTAT
32708065 AAAAA--AT
1 AAAAATTAT
*
32708072 AAAAATCAAT
1 AAAAAT-TAT
*
32708082 GAAAATTAT
1 AAAAATTAT
32708091 AAAAATTAT
1 AAAAATTAT
* *
32708100 TAAATTTATT
1 AAAAATTA-T
32708110 AAAAATT-T
1 AAAAATTAT
*
32708118 AAAAA-AAT
1 AAAAATTAT
*
32708126 AAAAATCAT
1 AAAAATTAT
32708135 AAAAA
1 AAAAA
32708140 AAATATAAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
6 1 0.02
7 5 0.08
8 17 0.29
9 23 0.39
10 13 0.22
ACGTcount: A:0.69, C:0.02, G:0.01, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:32708159 original size:20 final size:18
Alignment explanation
Indices: 32708118--32708160 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
32708108 TTAAAAATTT
*
32708118 AAAAAAATAAAAATCATA
1 AAAAAAATAAAAAGCATA
*
32708136 AAAAAAATATAAAACGCATC
1 AAAAAAATA-AAAA-GCATA
32708156 AAAAA
1 AAAAA
32708161 TGTCATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 9 0.43
19 4 0.19
20 8 0.38
ACGTcount: A:0.74, C:0.09, G:0.02, T:0.14
Consensus pattern (18 bp):
AAAAAAATAAAAAGCATA
Found at i:32708288 original size:17 final size:19
Alignment explanation
Indices: 32708263--32708311 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
32708253 GACATTTGGC
*
32708263 AAAAA-TAATAAAA-AT-T
1 AAAAATTAATAAAATATAG
32708279 AAAAATTAATAAAATATAG
1 AAAAATTAATAAAATATAG
32708298 AAAAATT-ATAAAAT
1 AAAAATTAATAAAAT
32708312 GCTTCTTTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 5 0.17
17 8 0.28
18 9 0.31
19 7 0.24
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAATTAATAAAATATAG
Found at i:32708379 original size:19 final size:18
Alignment explanation
Indices: 32708330--32708395 Score: 64
Period size: 19 Copynumber: 3.6 Consensus size: 18
32708320 TGGTAGGATA
*
32708330 ATTTTTACAATTTTTTAC
1 ATTTTTATAATTTTTTAC
32708348 GGA-TTTTAT-ATTTCTTTAC
1 --ATTTTTATAATTT-TTTAC
32708367 ATTTTTATAATTTTCTTAC
1 ATTTTTATAATTTT-TTAC
*
32708386 AATTTTATAA
1 ATTTTTATAA
32708396 AATTTTATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
17 1 0.03
18 11 0.28
19 27 0.68
20 1 0.03
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.59
Consensus pattern (18 bp):
ATTTTTATAATTTTTTAC
Found at i:32708831 original size:87 final size:88
Alignment explanation
Indices: 32708718--32708926 Score: 232
Period size: 89 Copynumber: 2.4 Consensus size: 88
32708708 AAAAAAAAAA
* * *
32708718 AAAAAAAAGCAGGGGC-TAATTGCTTTTTTGAAAAAGGTTAAGA-G-TCTTTTTTATACATTTTG
1 AAAAAAAAGTAGGGGCTTAATTACTTTTTTGAAAAA-G-TAAGAGGATCTTTTTGATACATTTTG
*
32708780 AAAGTTCAAGTACCCAATTGAATG-
64 AAAGTTCAAGCACCCAATTGAATGC
* * * *
32708804 AAAAAAAAGTAGGGACTTAATTACTTTTTTTGTTAAAAGTATGAGGATCTTTTTGATGCATTTTG
1 AAAAAAAAGTAGGGGCTTAATTAC-TTTTTTG-AAAAAGTAAGAGGATCTTTTTGATACATTTTG
* * *
32708869 AAATTTCAAGCACCTAATTGAGTGC
64 AAAGTTCAAGCACCCAATTGAATGC
*
32708894 AAAAAAAA-TTGGGGCTTAATTA-TTTTTTGAAAA
1 AAAAAAAAGTAGGGGCTTAATTACTTTTTTGAAAA
32708927 GATTTGAGGA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
86 17 0.17
87 17 0.17
88 9 0.09
89 52 0.50
90 8 0.08
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (88 bp):
AAAAAAAAGTAGGGGCTTAATTACTTTTTTGAAAAAGTAAGAGGATCTTTTTGATACATTTTGAA
AGTTCAAGCACCCAATTGAATGC
Found at i:32714781 original size:9 final size:9
Alignment explanation
Indices: 32714767--32714850 Score: 68
Period size: 9 Copynumber: 9.1 Consensus size: 9
32714757 GCAAATGATT
32714767 TTAAAATTA
1 TTAAAATTA
32714776 TTAAAATTA
1 TTAAAATTA
32714785 TTTTTAAAA-TA
1 ---TTAAAATTA
32714796 -TAAAATTA
1 TTAAAATTA
32714804 TTAAAATTA
1 TTAAAATTA
* *
32714813 TTTTAAA-CA
1 -TTAAAATTA
32714822 -TAAAATTA
1 TTAAAATTA
32714830 TTAAAATTA
1 TTAAAATTA
32714839 TTTTAAAATTA
1 --TTAAAATTA
32714850 T
1 T
32714851 AATCATCATC
Statistics
Matches: 61, Mismatches: 4, Indels: 20
0.72 0.05 0.24
Matches are distributed among these distances:
7 9 0.15
8 3 0.05
9 27 0.44
10 5 0.08
11 11 0.18
12 6 0.10
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (9 bp):
TTAAAATTA
Found at i:32714801 original size:19 final size:21
Alignment explanation
Indices: 32714765--32714850 Score: 68
Period size: 19 Copynumber: 4.6 Consensus size: 21
32714755 CAGCAAATGA
32714765 TTTTAAAATTATTAAAATTAT
1 TTTTAAAATTATTAAAATTAT
32714786 TTTTAAAA-TA-TAAAATTA-
1 TTTTAAAATTATTAAAATTAT
* *
32714804 --TTAAAATTATTTTAAA-CA-
1 TTTTAAAATTA-TTAAAATTAT
32714822 ---TAAAATTATTAAAATTA-
1 TTTTAAAATTATTAAAATTAT
32714839 TTTTAAAATTAT
1 TTTTAAAATTAT
32714851 AATCATCATC
Statistics
Matches: 54, Mismatches: 4, Indels: 15
0.74 0.05 0.21
Matches are distributed among these distances:
16 11 0.20
17 11 0.20
18 1 0.02
19 12 0.22
20 11 0.20
21 8 0.15
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTTAAAATTATTAAAATTAT
Found at i:32714808 original size:28 final size:27
Alignment explanation
Indices: 32714768--32714852 Score: 136
Period size: 26 Copynumber: 3.1 Consensus size: 27
32714758 CAAATGATTT
32714768 TAAAATTATTAAAATTATTTTTAAAATA
1 TAAAATTATTAAAATTA-TTTTAAAATA
*
32714796 TAAAATTATTAAAATTATTTT-AAACA
1 TAAAATTATTAAAATTATTTTAAAATA
32714822 TAAAATTATTAAAATTATTTTAAAATTA
1 TAAAATTATTAAAATTATTTTAAAA-TA
32714850 TAA
1 TAA
32714853 TCATCATCAT
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.47
27 7 0.13
28 21 0.40
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (27 bp):
TAAAATTATTAAAATTATTTTAAAATA
Found at i:32715323 original size:15 final size:15
Alignment explanation
Indices: 32715303--32715375 Score: 51
Period size: 15 Copynumber: 4.6 Consensus size: 15
32715293 TTGCAAATTG
32715303 TTGTTTCTTGTTTTT
1 TTGTTTCTTGTTTTT
32715318 TTG-TT-TTGTTGTTT
1 TTGTTTCTTGTT-TTT
*
32715332 CTTGTTCTGCTATTGTTTTA
1 -TTGTT-T-C--TTGTTTTT
* *
32715352 TTGTTTCTTGTTCTC
1 TTGTTTCTTGTTTTT
32715367 TTGTTTCTT
1 TTGTTTCTT
32715376 TAGTTGTGGG
Statistics
Matches: 47, Mismatches: 3, Indels: 16
0.71 0.05 0.24
Matches are distributed among these distances:
13 5 0.11
14 5 0.11
15 21 0.45
16 1 0.02
17 2 0.04
18 1 0.02
19 5 0.11
20 2 0.04
21 5 0.11
ACGTcount: A:0.03, C:0.11, G:0.15, T:0.71
Consensus pattern (15 bp):
TTGTTTCTTGTTTTT
Found at i:32715330 original size:23 final size:23
Alignment explanation
Indices: 32715300--32715372 Score: 83
Period size: 23 Copynumber: 3.0 Consensus size: 23
32715290 CCATTGCAAA
*
32715300 TTGTTGTTTCTTGTTTTTTTGTT
1 TTGTTGTTTCTTGTTTTATTGTT
32715323 TTGTTGTTTCTTGTTCTGCTATTGTT
1 TTGTTGTTTCTTGTT-T--TATTGTT
* * *
32715349 TTATTGTTTCTTGTTCTCTTGTT
1 TTGTTGTTTCTTGTTTTATTGTT
32715372 T
1 T
32715373 CTTTAGTTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
23 22 0.51
24 1 0.02
26 20 0.47
ACGTcount: A:0.03, C:0.10, G:0.16, T:0.71
Consensus pattern (23 bp):
TTGTTGTTTCTTGTTTTATTGTT
Found at i:32715347 original size:26 final size:24
Alignment explanation
Indices: 32715300--32715365 Score: 89
Period size: 26 Copynumber: 2.7 Consensus size: 24
32715290 CCATTGCAAA
*
32715300 TTGTTGTTTCTTGTT-TTTTTGTT
1 TTGTTGTTTCTTGTTCTTATTGTT
32715323 TTGTTGTTTCTTGTTCTGCTATTGTT
1 TTGTTGTTTCTTGTTCT--TATTGTT
*
32715349 TTATTGTTTCTTGTTCT
1 TTGTTGTTTCTTGTTCT
32715366 CTTGTTTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
23 15 0.39
24 1 0.03
26 22 0.58
ACGTcount: A:0.03, C:0.09, G:0.17, T:0.71
Consensus pattern (24 bp):
TTGTTGTTTCTTGTTCTTATTGTT
Found at i:32715644 original size:16 final size:16
Alignment explanation
Indices: 32715623--32715693 Score: 58
Period size: 16 Copynumber: 4.6 Consensus size: 16
32715613 GGAAATTAAA
32715623 ATTATTTAATAATTTT
1 ATTATTTAATAATTTT
***
32715639 ATTATTTCAA-AAAAAT
1 ATTATTT-AATAATTTT
*
32715655 AAT-TTTAATAATTTT
1 ATTATTTAATAATTTT
* *
32715670 ATAATTTAAAAATTTT
1 ATTATTTAATAATTTT
32715686 A-TATTTAA
1 ATTATTTAA
32715694 AAAAAATAAT
Statistics
Matches: 41, Mismatches: 11, Indels: 7
0.69 0.19 0.12
Matches are distributed among these distances:
14 2 0.05
15 13 0.32
16 24 0.59
17 2 0.05
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTATTTAATAATTTT
Found at i:32715697 original size:16 final size:16
Alignment explanation
Indices: 32715653--32715696 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
32715643 TTTCAAAAAA
*
32715653 ATAATTTTAATAATTTT
1 ATAA-TTTAAAAATTTT
32715670 ATAATTTAAAAATTTT
1 ATAATTTAAAAATTTT
32715686 AT-ATTTAAAAA
1 ATAATTTAAAAA
32715697 AAATAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 9 0.35
16 13 0.50
17 4 0.15
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATAATTTAAAAATTTT
Found at i:32719629 original size:24 final size:24
Alignment explanation
Indices: 32719602--32719652 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
32719592 TGTTATTTTA
*
32719602 AAATATATAAATATTC-TAATATTC
1 AAATATA-AAATATTCATAATAGTC
* *
32719626 AAATTTAAAATGTTCATAATAGTC
1 AAATATAAAATATTCATAATAGTC
32719650 AAA
1 AAA
32719653 GGTTAGAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATAAAATATTCATAATAGTC
Found at i:32720914 original size:26 final size:26
Alignment explanation
Indices: 32720878--32721104 Score: 237
Period size: 26 Copynumber: 8.7 Consensus size: 26
32720868 AGACTCTGAA
*
32720878 GATATACTGAATTGGCTCGAAAGAGT
1 GATATACTGAACTGGCTCGAAAGAGT
*
32720904 GATATACTGAACTAGCTCGAAAGAGT
1 GATATACTGAACTGGCTCGAAAGAGT
* * *
32720930 GATATACTAAACTGGCTCAAAAGAGC
1 GATATACTGAACTGGCTCGAAAGAGT
*
32720956 GATATACT-AATCTGGCTCGAAAGAGA
1 GATATACTGAA-CTGGCTCGAAAGAGT
* * * *
32720982 GAAATATTGAACTAGCTCGAAAGAGC
1 GATATACTGAACTGGCTCGAAAGAGT
* *
32721008 GATATACTAAACTGGCTCAAAAGAGT
1 GATATACTGAACTGGCTCGAAAGAGT
* *
32721034 GATATACTGAACTAGTTCGTAAA-AGT
1 GATATACTGAACTGGCTCG-AAAGAGT
* *
32721060 GATATACTAAACTGGCTC-ATAAGAGC
1 GATATACTGAACTGGCTCGA-AAGAGT
*
32721086 GATAAACTG-ACTGAGCTCG
1 GATATACTGAACTG-GCTCG
32721105 TATGAGCTAA
Statistics
Matches: 166, Mismatches: 28, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
24 1 0.01
25 8 0.05
26 152 0.92
27 5 0.03
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (26 bp):
GATATACTGAACTGGCTCGAAAGAGT
Found at i:32721084 original size:78 final size:78
Alignment explanation
Indices: 32720878--32721089 Score: 286
Period size: 78 Copynumber: 2.7 Consensus size: 78
32720868 AGACTCTGAA
* *
32720878 GATATACTGAATTGGCTCGAAAGAGTGATATACTGAACTAGCTCGAAAGAGTGATATACTAAACT
1 GATATACTGAACTGGCTCGAAAGAGTGATATACTGAACTAGCTCGAAAGAGCGATATACTAAACT
32720943 GGCTCAAAAGAGC
66 GGCTCAAAAGAGC
* * *
32720956 GATATACT-AATCTGGCTCGAAAGAGAGAAATATTGAACTAGCTCGAAAGAGCGATATACTAAAC
1 GATATACTGAA-CTGGCTCGAAAGAGTGATATACTGAACTAGCTCGAAAGAGCGATATACTAAAC
*
32721020 TGGCTCAAAAGAGT
65 TGGCTCAAAAGAGC
* * * *
32721034 GATATACTGAACTAGTTCGTAAA-AGTGATATACTAAACTGGCTC-ATAAGAGCGATA
1 GATATACTGAACTGGCTCG-AAAGAGTGATATACTGAACTAGCTCGA-AAGAGCGATA
32721090 AACTGACTGA
Statistics
Matches: 117, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
77 3 0.03
78 109 0.93
79 5 0.04
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.24
Consensus pattern (78 bp):
GATATACTGAACTGGCTCGAAAGAGTGATATACTGAACTAGCTCGAAAGAGCGATATACTAAACT
GGCTCAAAAGAGC
Found at i:32723346 original size:12 final size:12
Alignment explanation
Indices: 32723331--32723360 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32723321 AGTAACCAAT
32723331 GAAGTGCCAAAG
1 GAAGTGCCAAAG
32723343 GAAGTGCCAAAG
1 GAAGTGCCAAAG
*
32723355 AAAGTG
1 GAAGTG
32723361 GGAGTTGCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.13, G:0.33, T:0.10
Consensus pattern (12 bp):
GAAGTGCCAAAG
Found at i:32728221 original size:24 final size:24
Alignment explanation
Indices: 32728150--32728221 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
32728140 ATTGTATTTT
* * *
32728150 TATACATATATATTGTTTTATATA
1 TATACATATACACTATTTTATATA
*
32728174 TATAATCTTATATC-C-ATTTTATATA
1 TAT-A-CATATA-CACTATTTTATATA
32728199 TATACATATACACTATTTTATAT
1 TATACATATACACTATTTTATAT
32728222 GTACACATTG
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
22 1 0.03
23 6 0.16
24 13 0.34
25 13 0.34
26 5 0.13
ACGTcount: A:0.38, C:0.10, G:0.01, T:0.51
Consensus pattern (24 bp):
TATACATATACACTATTTTATATA
Found at i:32737415 original size:26 final size:26
Alignment explanation
Indices: 32737377--32737577 Score: 190
Period size: 26 Copynumber: 7.7 Consensus size: 26
32737367 AGACTCTGAA
*
32737377 GATATATTGAACTGGCTCGAAAGAGC
1 GATATACTGAACTGGCTCGAAAGAGC
* ** * *
32737403 GATATACTTAACTAACTTGTAAGAGC
1 GATATACTGAACTGGCTCGAAAGAGC
*
32737429 GATATACTGAACTGGCTTGAAAGAGC
1 GATATACTGAACTGGCTCGAAAGAGC
* *
32737455 GATATACTGAACTGGCTCGAAGGAGT
1 GATATACTGAACTGGCTCGAAAGAGC
* * * *
32737481 AATATACTAAACTAGCTCAAAAGAGC
1 GATATACTGAACTGGCTCGAAAGAGC
* * * *
32737507 AATATACTGAATTGCCTCGTAAGAGC
1 GATATACTGAACTGGCTCGAAAGAGC
* *
32737533 GATATACTGAATTGGCT-TATAAGAGC
1 GATATACTGAACTGGCTCGA-AAGAGC
*
32737559 GATAAACTG-ACTAGGCTCG
1 GATATACTGAACT-GGCTCG
32737578 TATGAGCTAA
Statistics
Matches: 140, Mismatches: 32, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
25 2 0.01
26 138 0.99
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (26 bp):
GATATACTGAACTGGCTCGAAAGAGC
Found at i:32737506 original size:78 final size:78
Alignment explanation
Indices: 32737377--32737549 Score: 211
Period size: 78 Copynumber: 2.2 Consensus size: 78
32737367 AGACTCTGAA
* * * *** *
32737377 GATATATTGAACTGGCTCGAAAGAGCGATATACTTAACTAACTTGTAAGAGCGATATACTGAACT
1 GATATACTGAACTGGCTCGAAAGAGCAATATACTAAACTAACTCAAAAGAGCAATATACTGAACT
* *
32737442 GGCTTGAAAGAGC
66 GCCTCGAAAGAGC
* * * *
32737455 GATATACTGAACTGGCTCGAAGGAGTAATATACTAAACTAGCTCAAAAGAGCAATATACTGAATT
1 GATATACTGAACTGGCTCGAAAGAGCAATATACTAAACTAACTCAAAAGAGCAATATACTGAACT
*
32737520 GCCTCGTAAGAGC
66 GCCTCGAAAGAGC
*
32737533 GATATACTGAATTGGCT
1 GATATACTGAACTGGCT
32737550 TATAAGAGCG
Statistics
Matches: 80, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (78 bp):
GATATACTGAACTGGCTCGAAAGAGCAATATACTAAACTAACTCAAAAGAGCAATATACTGAACT
GCCTCGAAAGAGC
Found at i:32739725 original size:2 final size:2
Alignment explanation
Indices: 32739718--32739748 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
32739708 AAAGATCAAA
32739718 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32739749 ATCGAAAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32740953 original size:6 final size:6
Alignment explanation
Indices: 32740942--32741018 Score: 70
Period size: 6 Copynumber: 13.2 Consensus size: 6
32740932 CATTTTTTTA
** *
32740942 AAATTT AAATTT ATTTTT AAATTT -AGTTT AAATTT AAATTT AAA-TT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
* **
32740988 -CATTCT AAATTT AAATTT ATTTTT AAATTT A
1 AAATT-T AAATTT AAATTT AAATTT AAATTT A
32741019 CTTAAAAATT
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
4 1 0.02
5 7 0.13
6 44 0.80
7 3 0.05
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.55
Consensus pattern (6 bp):
AAATTT
Found at i:32740973 original size:23 final size:22
Alignment explanation
Indices: 32740944--32741006 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
32740934 TTTTTTTAAA
** *
32740944 ATTTAAATTTATTTTTAAATTT
1 ATTTAAATTTAAATTTAAATTC
32740966 AGTTTAAATTTAAATTTAAATTC
1 A-TTTAAATTTAAATTTAAATTC
32740989 ATTCTAAATTTAAATTTA
1 ATT-TAAATTTAAATTTA
32741007 TTTTTAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 3 0.08
23 33 0.92
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (22 bp):
ATTTAAATTTAAATTTAAATTC
Found at i:32754291 original size:50 final size:50
Alignment explanation
Indices: 32754227--32754395 Score: 230
Period size: 50 Copynumber: 3.4 Consensus size: 50
32754217 TTGAAGACAG
***
32754227 AGGTTGAGGCCGCAACGGCGAACCCAAAACCTAAGAAGATGTGATGGGAA
1 AGGTTGAGGCCGCAACGGCGAACCCGGTACCTAAGAAGATGTGATGGGAA
* * * *
32754277 AGGTTGAGGTCGCAACGGTGAACCCGGTACCTAAGAAGATATGAAGGGAA
1 AGGTTGAGGCCGCAACGGCGAACCCGGTACCTAAGAAGATGTGATGGGAA
* * * *
32754327 AGGTTGAGGCTGCAATGACGAACCCGGTACCTAAGCAGATGTGATGGGAA
1 AGGTTGAGGCCGCAACGGCGAACCCGGTACCTAAGAAGATGTGATGGGAA
*
32754377 AGGTTGAGGCCACAACGGC
1 AGGTTGAGGCCGCAACGGC
32754396 AAATTCAAGG
Statistics
Matches: 100, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 100 1.00
ACGTcount: A:0.33, C:0.19, G:0.34, T:0.15
Consensus pattern (50 bp):
AGGTTGAGGCCGCAACGGCGAACCCGGTACCTAAGAAGATGTGATGGGAA
Found at i:32754367 original size:100 final size:99
Alignment explanation
Indices: 32754176--32754394 Score: 269
Period size: 100 Copynumber: 2.2 Consensus size: 99
32754166 TTTGACAGGG
* ** *
32754176 AAGGATTGAGGCCGCGACGGTGAATTCGGTACCTTAAAAGATTGAAGACAGAGGTTGAGGCCGCA
1 AAGG-TTGAGGCCGCAACGGTGAACCCGGTACCTTAAAAGATTGAAGACAAAGGTTGAGGCCGCA
*
32754241 ACGGCGAACCCAAAACCTAAGAAGATGTGATGGGA
65 ACGACGAACCCAAAACCTAAGAAGATGTGATGGGA
* ** *
32754276 AAGGTTGAGGTCGCAACGGTGAACCCGGTACC-TAAGAAGATATGAAGGGAAAGGTTGAGGCTGC
1 AAGGTTGAGGCCGCAACGGTGAACCCGGTACCTTAA-AAGAT-TGAAGACAAAGGTTGAGGCCGC
* *** *
32754340 AATGACGAACCCGGTACCTAAGCAGATGTGATGGGA
64 AACGACGAACCCAAAACCTAAGAAGATGTGATGGGA
*
32754376 AAGGTTGAGGCCACAACGG
1 AAGGTTGAGGCCGCAACGG
32754395 CAAATTCAAG
Statistics
Matches: 101, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
98 3 0.03
99 29 0.29
100 69 0.68
ACGTcount: A:0.33, C:0.18, G:0.33, T:0.16
Consensus pattern (99 bp):
AAGGTTGAGGCCGCAACGGTGAACCCGGTACCTTAAAAGATTGAAGACAAAGGTTGAGGCCGCAA
CGACGAACCCAAAACCTAAGAAGATGTGATGGGA
Found at i:32754830 original size:39 final size:40
Alignment explanation
Indices: 32754739--32754834 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 40
32754729 AATTGAATAT
* *
32754739 TTCGATCTTTTATCCCGAGCTTGGGGCAGATCACCATCAG
1 TTCGATCTTTTACCCCGAGCTTAGGGCAGATCACCATCAG
* * **
32754779 TT-AATCTCTTACCCCGAGCTTAGGGCAGAT-TGCAGTCA-
1 TTCGATCTTTTACCCCGAGCTTAGGGCAGATCACCA-TCAG
32754817 TTCGATCTTTTACCCCGA
1 TTCGATCTTTTACCCCGA
32754835 CCATAGGCAA
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
38 4 0.09
39 40 0.87
40 2 0.04
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (40 bp):
TTCGATCTTTTACCCCGAGCTTAGGGCAGATCACCATCAG
Found at i:32755538 original size:208 final size:208
Alignment explanation
Indices: 32754913--32756230 Score: 1631
Period size: 208 Copynumber: 6.3 Consensus size: 208
32754903 TAAAATGGTC
* * * ** * * * **
32754913 ACCTTCCTAATAAGATACAGAGAAGT-AGACCAAATCTTTCTTTCTAATGAGATATAGAGAAGCA
1 ACCTTCCTGATGAGATACAGAGAAGTGA-ACCAGATCCATCTTCCTGATGAGATACAGAGAAGTG
** ** ** * * * * *
32754977 GATTGAAACAGTGATACGGTCATCTTTCTGATGAGATACAGAGAAGAAGACCACATCAATGAAGC
65 GATCAAAACAACGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAAC
* ** ** * * * * *
32755042 AAAACTCAGTGCGAGTGAAA-CTTC-AAACCTATCTTCCTGATGAGATACTGAGAAGT-GAGTCG
130 CAGGCTCAAAGTGAG-CAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAG-GTCG
* *
32755104 AAGTAATAAAG-TGTT
193 AAGCAATAAAGCGGTT
* * * * * * * * *
32755119 CATCTTCTTGACGGGATACGGTGAAGTGAACCAAATCCATCTTCTTGATGAGATATAGAGAAGTG
1 -ACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCATCTTCCTGATGAGATACAGAGAAGTG
* * * * *
32755184 GATAAAAATAACGAGACGGTCATATTCCTGATGAGATACTGAGAAGTAGACCAAACCAATG-AAC
65 GATCAAAACAACGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAAC
* * * * *
32755248 CAAGTTTAAAGTGAGCAAATCTTCGAACCCCAGCTTCTTGATGAGATACTGAGAAGTAGATCGAA
130 CAGGCTCAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAA
32755313 GCAATAAAGCGGTT
195 GCAATAAAGCGGTT
* * * *
32755327 ACCTTCCTGATGAGATACAAAGAAGTGAACCAGATCCGTCTTCCTAATGAGATACAAAGAAGTGG
1 ACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCATCTTCCTGATGAGATACAGAGAAGTGG
* * * *
32755392 ATCAAAATAACGAGGTGGTCATCTTCTTGATGAGATACTGAGAAGTAGATCAAATCAATGAAACC
66 ATCAAAACAACGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACC
32755457 AGGCTCAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAG
131 AGGCTCAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAG
*
32755522 CAATAAAGCAGTT
196 CAATAAAGCGGTT
* * * * * * * * *
32755535 ACCTTCTTGCTAAGATACAGAGAAGTGAGCCAGATCCGTCTTCTTAATAAGATACAGAAAAGTGG
1 ACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCATCTTCCTGATGAGATACAGAGAAGTGG
* * * *
32755600 ATCAAAACAACGAGGCGATCATCTTCCTGATAAGATATTGAGAAGTGGACCAAATCAATGAAACC
66 ATCAAAACAACGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACC
* * * *
32755665 AGACTCAAAGTGAGCAAATCTTTGAACCTCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAG
131 AGGCTCAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAG
*
32755730 CAATAAAACGGTT
196 CAATAAAGCGGTT
* *
32755743 ACCTTCCTGATGAGATACAAAGAAGTGAACCAGATCCATTTTCCTGATGAGATACAGAGAAGTGG
1 ACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCATCTTCCTGATGAGATACAGAGAAGTGG
* * *
32755808 ATCAAAACAACGAGGTGGTCATCTTCTTGATGAGATATTGAGAAGTAGACCAAATCAATGAAACC
66 ATCAAAACAACGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACC
* * * * * *
32755873 AGGCTCAAAGTAAGCAAATCTTCAAATCCCAGCTTCCTGATGAGATAATAAGAAGCAGGTCGAAG
131 AGGCTCAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAG
*
32755938 CAATAAAGCAGTT
196 CAATAAAGCGGTT
* *
32755951 ACCTTCCTGATGAGATATAGAGAAGTGAACCAGATTCATCTTCCTGATGAGATACAGAGAAGTGG
1 ACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCATCTTCCTGATGAGATACAGAGAAGTGG
*
32756016 ATCAAAACAACGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTGGACCAAATCAATGAAACC
66 ATCAAAACAACGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACC
* * *
32756081 AGACTCAAAGTGAGCAAATCTTTGAGCCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAG
131 AGGCTCAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAG
32756146 CAATAAAGCGGTT
196 CAATAAAGCGGTT
* * * * *
32756159 ACCTTCCTGATGAGATACAGAGAAGTAAACCAGATCCGTCTTCTTGATAAGATACAGAGAAATGG
1 ACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCATCTTCCTGATGAGATACAGAGAAGTGG
*
32756224 ACCAAAA
66 ATCAAAA
32756231 AATGAAGTCA
Statistics
Matches: 961, Mismatches: 144, Indels: 11
0.86 0.13 0.01
Matches are distributed among these distances:
205 3 0.00
206 14 0.01
207 242 0.25
208 702 0.73
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (208 bp):
ACCTTCCTGATGAGATACAGAGAAGTGAACCAGATCCATCTTCCTGATGAGATACAGAGAAGTGG
ATCAAAACAACGAGGCGGTCATCTTCCTGATGAGATACTGAGAAGTAGACCAAATCAATGAAACC
AGGCTCAAAGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAG
CAATAAAGCGGTT
Found at i:32756651 original size:6 final size:6
Alignment explanation
Indices: 32756627--32756715 Score: 60
Period size: 6 Copynumber: 15.3 Consensus size: 6
32756617 CATTTTTTTA
* ** * *
32756627 AAATTT TAATTT ATTTTT AAATTT -AGTTT AAATTT AAATTT -ATTTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
* * **
32756673 GAATTT AAA-TT -CATTCT AAATTT AAATTT ATTTTT AAATTT AA
1 AAATTT AAATTT AAATT-T AAATTT AAATTT AAATTT AAATTT AA
32756716 TTAAAAATTA
Statistics
Matches: 61, Mismatches: 17, Indels: 10
0.69 0.19 0.11
Matches are distributed among these distances:
4 1 0.02
5 11 0.18
6 46 0.75
7 3 0.05
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (6 bp):
AAATTT
Found at i:32756717 original size:17 final size:17
Alignment explanation
Indices: 32756642--32756715 Score: 103
Period size: 17 Copynumber: 4.3 Consensus size: 17
32756632 TTAATTTATT
*
32756642 TTTAAATTTAGTTTAAA
1 TTTAAATTTATTTTAAA
*
32756659 TTTAAATTTATTTTGAA
1 TTTAAATTTATTTTAAA
* *
32756676 TTTAAATTCATTCTAAA
1 TTTAAATTTATTTTAAA
32756693 TTTAAATTTATTTTTAAA
1 TTTAAATTTA-TTTTAAA
32756711 TTTAA
1 TTTAA
32756716 TTAAAAATTA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
17 38 0.78
18 11 0.22
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:32760002 original size:17 final size:17
Alignment explanation
Indices: 32759965--32760003 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
32759955 ATATTAAGGG
*
32759965 CCAAAGTGACCCAAGAA
1 CCAAAGTGACCCAACAA
*
32759982 CCAAAGTGACCCAACAC
1 CCAAAGTGACCCAACAA
32759999 CCAAA
1 CCAAA
32760004 CATTATGAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.36, G:0.13, T:0.05
Consensus pattern (17 bp):
CCAAAGTGACCCAACAA
Found at i:32761703 original size:16 final size:16
Alignment explanation
Indices: 32761682--32761754 Score: 53
Period size: 16 Copynumber: 4.6 Consensus size: 16
32761672 CCTTGACATA
32761682 TTCATCATCACCATCC
1 TTCATCATCACCATCC
* *
32761698 TTCATCATCTCTTCAACC
1 TTCATCATCAC--CATCC
**
32761716 ACCATCATCA-C--CC
1 TTCATCATCACCATCC
*
32761729 TATCATTATCACCATCC
1 T-TCATCATCACCATCC
32761746 TTCATCATC
1 TTCATCATC
32761755 TCTTCAACCA
Statistics
Matches: 42, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
13 2 0.05
14 7 0.17
15 2 0.05
16 17 0.40
17 3 0.07
18 11 0.26
ACGTcount: A:0.26, C:0.41, G:0.00, T:0.33
Consensus pattern (16 bp):
TTCATCATCACCATCC
Found at i:32761712 original size:27 final size:27
Alignment explanation
Indices: 32761682--32761760 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
32761672 CCTTGACATA
32761682 TTCATCATCACCATCCTTCATCATCTC
1 TTCATCATCACCATCCTTCATCATCTC
* *
32761709 -T--TCA--ACCA-CCATCATCA-CCC
1 TTCATCATCACCATCCTTCATCATCTC
*
32761729 TATCATTATCACCATCCTTCATCATCTC
1 T-TCATCATCACCATCCTTCATCATCTC
32761757 TTCA
1 TTCA
32761761 ACCACCATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 16
0.65 0.08 0.27
Matches are distributed among these distances:
20 2 0.05
21 8 0.21
22 5 0.13
24 5 0.13
26 5 0.13
27 11 0.28
28 3 0.08
ACGTcount: A:0.25, C:0.41, G:0.00, T:0.34
Consensus pattern (27 bp):
TTCATCATCACCATCCTTCATCATCTC
Found at i:32761753 original size:48 final size:48
Alignment explanation
Indices: 32761683--32761786 Score: 190
Period size: 48 Copynumber: 2.2 Consensus size: 48
32761673 CTTGACATAT
32761683 TCATCATCACCATCCTTCATCATCTCTTCAACCACCATCATCACCCTA
1 TCATCATCACCATCCTTCATCATCTCTTCAACCACCATCATCACCCTA
* *
32761731 TCATTATCACCATCCTTCATCATCTCTTCAACCACCATTATCACCCTA
1 TCATCATCACCATCCTTCATCATCTCTTCAACCACCATCATCACCCTA
32761779 TCATCATC
1 TCATCATC
32761787 TTCTTCTTGG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.27, C:0.41, G:0.00, T:0.32
Consensus pattern (48 bp):
TCATCATCACCATCCTTCATCATCTCTTCAACCACCATCATCACCCTA
Found at i:32767095 original size:29 final size:29
Alignment explanation
Indices: 32767063--32767284 Score: 142
Period size: 29 Copynumber: 7.6 Consensus size: 29
32767053 CTCCGAGGGC
*
32767063 AAAAATGGAATTTTGGTGAAACCGGGGTT
1 AAAAATGGAATTTTGGTGAAATCGGGGTT
* *
32767092 AAAAATGGGATTTT-G-GAAAGTTTAGGGG-T
1 AAAAATGGAATTTTGGTGAAA---TCGGGGTT
32767121 -AAAATGGTAATTTTTGGTGAAATCGGGGTT
1 AAAAATGG-AA-TTTTGGTGAAATCGGGGTT
*
32767151 AAAAATGGAATTTT-G-GAAAGTTTAGGGG-T
1 AAAAATGGAATTTTGGTGAAA---TCGGGGTT
* *
32767180 -AAAATGGTAATTTTTAGTGAAATCGAGGTT
1 AAAAATGG-AA-TTTTGGTGAAATCGGGGTT
* * *
32767210 AAAAATGAAATTTT-G-GAAAGTTTGGGGGT
1 AAAAATGGAATTTTGGTGAAA--TCGGGGTT
* *
32767239 -AAAATGGTAATTTTTGGTGAAACCGAGGTT
1 AAAAATGG-AA-TTTTGGTGAAATCGGGGTT
32767269 AAAAATGGAATTTTGG
1 AAAAATGGAATTTTGG
32767285 AAAGTTTGGG
Statistics
Matches: 151, Mismatches: 17, Indels: 50
0.69 0.08 0.23
Matches are distributed among these distances:
27 12 0.08
28 23 0.15
29 48 0.32
30 33 0.22
31 23 0.15
32 12 0.08
ACGTcount: A:0.36, C:0.03, G:0.29, T:0.32
Consensus pattern (29 bp):
AAAAATGGAATTTTGGTGAAATCGGGGTT
Found at i:32767136 original size:30 final size:30
Alignment explanation
Indices: 32767102--32767255 Score: 128
Period size: 30 Copynumber: 5.2 Consensus size: 30
32767092 AAAAATGGGA
32767102 TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
*
32767132 TTTTGGTGAAA---TCGGGGTTAAAAATGG-AA-
1 TTTT-G-GAAAGTTTAGGGG-T-AAAATGGTAAT
32767161 TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
** * *
32767191 TTTTAGTGAAA-TCGA-GGTTAAAAAT-G-AAA
1 TTTT-G-GAAAGTTTAGGGGT-AAAATGGTAAT
*
32767220 TTTTGGAAAGTTTGGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
32767250 TTTTGG
1 TTTTGG
32767256 TGAAACCGAG
Statistics
Matches: 97, Mismatches: 11, Indels: 32
0.69 0.08 0.23
Matches are distributed among these distances:
27 8 0.08
28 15 0.15
29 22 0.23
30 28 0.29
31 16 0.16
32 8 0.08
ACGTcount: A:0.34, C:0.01, G:0.29, T:0.36
Consensus pattern (30 bp):
TTTTGGAAAGTTTAGGGGTAAAATGGTAAT
Found at i:32767148 original size:59 final size:59
Alignment explanation
Indices: 32767064--32767295 Score: 371
Period size: 59 Copynumber: 4.0 Consensus size: 59
32767054 TCCGAGGGCA
* *
32767064 AAAATGG-AA-TTTTGGTGAAACCGGGGTTAAAAATGGGATTTTGGAAAGTTTAGGGGT
1 AAAATGGTAATTTTTGGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGT
* *
32767121 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGT
1 AAAATGGTAATTTTTGGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGT
* * * *
32767180 AAAATGGTAATTTTTAGTGAAATCGAGGTTAAAAATGAAATTTTGGAAAGTTTGGGGGT
1 AAAATGGTAATTTTTGGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGT
32767239 AAAATGGTAATTTTTGGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGTTT-GGGG
1 AAAATGGTAATTTTTGGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGTTTAGGGG
32767296 ACTAGAGAGC
Statistics
Matches: 164, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
57 7 0.04
58 6 0.04
59 151 0.92
ACGTcount: A:0.35, C:0.03, G:0.30, T:0.32
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGT
Found at i:32767952 original size:28 final size:28
Alignment explanation
Indices: 32767919--32767976 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
32767909 GAAGGTCCTC
32767919 CACGCGCCTCCGACCACACACGCTTGCT
1 CACGCGCCTCCGACCACACACGCTTGCT
* *
32767947 CACGCGCCTCCGACCACGCATGCTTGCT
1 CACGCGCCTCCGACCACACACGCTTGCT
32767975 CA
1 CA
32767977 TGTGCCGACG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.17, C:0.48, G:0.19, T:0.16
Consensus pattern (28 bp):
CACGCGCCTCCGACCACACACGCTTGCT
Found at i:32768422 original size:10 final size:10
Alignment explanation
Indices: 32768405--32768438 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
32768395 TTTTTAAAAA
32768405 TAATTATTAT
1 TAATTATTAT
*
32768415 TTATTATTAT
1 TAATTATTAT
*
32768425 TAATTAATAT
1 TAATTATTAT
32768435 TAAT
1 TAAT
32768439 GAGTTTGGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TAATTATTAT
Found at i:32769218 original size:6 final size:6
Alignment explanation
Indices: 32769207--32769270 Score: 55
Period size: 6 Copynumber: 11.3 Consensus size: 6
32769197 TTTTAAATGT
** *
32769207 ATTTAA ATTTAA A-ACAA ATTTAA ATTTAA A--TAA ATTTAA AATT-A
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
* *
32769251 ATTTAA ACTTAA ATTAAA AT
1 ATTTAA ATTTAA ATTTAA AT
32769271 CCAAGTTGGG
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
4 4 0.09
5 7 0.16
6 34 0.76
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (6 bp):
ATTTAA
Found at i:32769219 original size:16 final size:16
Alignment explanation
Indices: 32769207--32769270 Score: 65
Period size: 17 Copynumber: 3.9 Consensus size: 16
32769197 TTTTAAATGT
*
32769207 ATTTAAATTTAAAACAA
1 ATTTAAATTT-AAATAA
32769224 ATTTAAATTTAAATAA
1 ATTTAAATTTAAATAA
* *
32769240 ATTTAAAATTAATTTAA
1 ATTTAAATTTAA-ATAA
* *
32769257 ACTTAAATTAAAAT
1 ATTTAAATTTAAAT
32769271 CCAAGTTGGG
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
16 17 0.44
17 22 0.56
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
ATTTAAATTTAAATAA
Found at i:32769227 original size:17 final size:17
Alignment explanation
Indices: 32769207--32769251 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
32769197 TTTTAAATGT
32769207 ATTTAAATTTAAAACAA
1 ATTTAAATTTAAAACAA
*
32769224 ATTTAAATTT-AAATAA
1 ATTTAAATTTAAAACAA
*
32769240 ATTTAAAATTAA
1 ATTTAAATTTAA
32769252 TTTAAACTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTTAAATTTAAAACAA
Found at i:32769228 original size:27 final size:27
Alignment explanation
Indices: 32769198--32769257 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
32769188 TTCAAATTAT
**
32769198 TTTAAATGTATTTAAATTTAAAACAAA
1 TTTAAATGTAAATAAATTTAAAACAAA
* **
32769225 TTTAAATTTAAATAAATTTAAAATTAA
1 TTTAAATGTAAATAAATTTAAAACAAA
32769252 TTTAAA
1 TTTAAA
32769258 CTTAAATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (27 bp):
TTTAAATGTAAATAAATTTAAAACAAA
Found at i:32769262 original size:27 final size:27
Alignment explanation
Indices: 32769210--32769264 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
32769200 TAAATGTATT
*
32769210 TAAATTTAAAACAAATTTAAATTTAAA
1 TAAATTTAAAACAAATTTAAACTTAAA
**
32769237 TAAATTTAAAATTAATTTAAACTTAAA
1 TAAATTTAAAACAAATTTAAACTTAAA
32769264 T
1 T
32769265 TAAAATCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (27 bp):
TAAATTTAAAACAAATTTAAACTTAAA
Found at i:32769912 original size:14 final size:15
Alignment explanation
Indices: 32769895--32769933 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
32769885 GTCATAAATT
*
32769895 ATATTTCA-TTAAAA
1 ATATTTCACATAAAA
32769909 ATATTTCACATAAAA
1 ATATTTCACATAAAA
32769924 A-ATTTCACAT
1 ATATTTCACAT
32769934 CATCCTCGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 17 0.74
15 6 0.26
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (15 bp):
ATATTTCACATAAAA
Found at i:32770687 original size:16 final size:16
Alignment explanation
Indices: 32770656--32770689 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32770646 AACTAATTTA
**
32770656 ATAAATAATTTTTCAT
1 ATAAATAATTAATCAT
32770672 ATAAATAATTAATCAT
1 ATAAATAATTAATCAT
32770688 AT
1 AT
32770690 TTTTGTATAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAAATAATTAATCAT
Found at i:32774248 original size:308 final size:308
Alignment explanation
Indices: 32773671--32774288 Score: 1001
Period size: 309 Copynumber: 2.0 Consensus size: 308
32773661 GCTTCAATCT
32773671 GATCAAGATCGTGTCACCAATTGTGAAAAGAGAAAATTACGGATTTGTCCCTAGAGTTCACTTTA
1 GATCAAGATCGTGTCACCAATTGTGAAAAGAGAAAATTACGGATTTGTCCCTAGAGTTCACTTTA
* * * * *
32773736 ACTGCAATTTCATTCGGTAAGTTCGTAACGTTAAATTTGCATTTTAATAGTACATTATTGTATTC
66 ACTGCAATTTCATCCGGTAAGTTCGTAACATTAAATTTACATTTTAATAATACATTATTGTATTA
* * * * **
32773801 TTTATAATCGTTGTAGAACAGGTTATGGTACGTGAAATTGAGAAATATGAAAAGGAAATGAATGA
131 TTTATAATCGTTGTAGAACAAGTTATGATACATGAAATTGAGAAAGATGAAAAAAAAATGAATGA
**
32773866 AAGAGAAATCAAGCTTTGAGCCGGTGATTTGAAACCAACGCGATGGCTGAGGTACCGCATACGTT
196 AAGAGAAATCAAGCTTTGAGCCGGTGATTTGAAACCAACAAGATGGCTGAGGTACCGCATACGTT
* *
32773931 GCGAGTTCTCGGCAGCTCATGTGAGCAGCATT-GTGAGTT-GAGAAATGA
261 GCGAGTTCTCGACAGCTCATGTAAGCAGC-TTCGTGAGTTGGA-AAATGA
*
32773979 GATCAAGATCGTGTCACCGATTGTGGAAAAG-GAAAAATTACGGATTTGTCCCTAGAGTTCACTT
1 GATCAAGATCGTGTCACCAATTGT-GAAAAGAG-AAAATTACGGATTTGTCCCTAGAGTTCACTT
32774043 TAACTGCAATTTCATCCGGTAAGTTCGTAACATTAAATTTACATTTTAATAATACATTATTGTAT
64 TAACTGCAATTTCATCCGGTAAGTTCGTAACATTAAATTTACATTTTAATAATACATTATTGTAT
*
32774108 TATTTATAATCGTTGTTGAACAAGTTATGATACATGAAATTGAGAAAGAT-AAAAAAAAATGAAT
129 TATTTATAATCGTTGTAGAACAAGTTATGATACATGAAATTGAGAAAGATGAAAAAAAAATGAAT
*
32774172 GAAAGAGATATCAAGCTTTGAGCCGGTGATTTGAAACCAACAAGATGGCTGAGGTACCGCATACG
194 GAAAGAGAAATCAAGCTTTGAGCCGGTGATTTGAAACCAACAAGATGGCTGAGGTACCGCATACG
*
32774237 TTGCGAGTTCTCGACAGCTTATGTAAGCAGCTTCGTGAGTTGGAAAATGA
259 TTGCGAGTTCTCGACAGCTCATGTAAGCAGCTTCGTGAGTTGGAAAATGA
32774287 GA
1 GA
32774289 AATGAATCCA
Statistics
Matches: 287, Mismatches: 19, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
307 2 0.01
308 141 0.49
309 144 0.50
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (308 bp):
GATCAAGATCGTGTCACCAATTGTGAAAAGAGAAAATTACGGATTTGTCCCTAGAGTTCACTTTA
ACTGCAATTTCATCCGGTAAGTTCGTAACATTAAATTTACATTTTAATAATACATTATTGTATTA
TTTATAATCGTTGTAGAACAAGTTATGATACATGAAATTGAGAAAGATGAAAAAAAAATGAATGA
AAGAGAAATCAAGCTTTGAGCCGGTGATTTGAAACCAACAAGATGGCTGAGGTACCGCATACGTT
GCGAGTTCTCGACAGCTCATGTAAGCAGCTTCGTGAGTTGGAAAATGA
Found at i:32774624 original size:120 final size:120
Alignment explanation
Indices: 32774405--32774639 Score: 416
Period size: 120 Copynumber: 2.0 Consensus size: 120
32774395 CATAGATACC
*
32774405 GTATAGATGGCTGGGGTACCGCATATATTGCGAGTCCTCGACAGCTAGTGTGAGCAGCATCGTAT
1 GTATAGATGGCTGGGGTACCACATATATTGCGAGTCCTCGACAGCTAGTGTGAGCAGCATCGTAT
*
32774470 ACTGGTAACGGAGTTGATACAGACATGAGAATGAAATTCTGGATTATAGCATATT
66 ACTGGTAACAGAGTTGATACAGACATGAGAATGAAATTCTGGATTATAGCATATT
* * *
32774525 GTATCGATGGCTGGGGTACCACATATGTTGCGAGTCCTCGACAGCTTGTGTGAGCAGCATCGTAT
1 GTATAGATGGCTGGGGTACCACATATATTGCGAGTCCTCGACAGCTAGTGTGAGCAGCATCGTAT
*
32774590 ACTGGTAACAGAGTTGATACAGACATGAGGATGAAATTCTGGATTATAGC
66 ACTGGTAACAGAGTTGATACAGACATGAGAATGAAATTCTGGATTATAGC
32774640 TTGTGGAAGC
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 109 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (120 bp):
GTATAGATGGCTGGGGTACCACATATATTGCGAGTCCTCGACAGCTAGTGTGAGCAGCATCGTAT
ACTGGTAACAGAGTTGATACAGACATGAGAATGAAATTCTGGATTATAGCATATT
Found at i:32775263 original size:21 final size:21
Alignment explanation
Indices: 32775237--32775293 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
32775227 TCTGGAGTTT
32775237 ATTGTATTGGTAGAAGTAATA
1 ATTGTATTGGTAGAAGTAATA
* * *
32775258 ATTGTATCGGTAGTAGTCATA
1 ATTGTATTGGTAGAAGTAATA
*
32775279 CTTGTATCT-GTAGAA
1 ATTGTAT-TGGTAGAA
32775294 CCTTTTCAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.39
Consensus pattern (21 bp):
ATTGTATTGGTAGAAGTAATA
Found at i:32778272 original size:30 final size:29
Alignment explanation
Indices: 32778212--32778453 Score: 207
Period size: 30 Copynumber: 8.1 Consensus size: 29
32778202 CCCAAAAAAC
* *
32778212 CCCTAAACTTTTCCAAAATCACATTTTTGA
1 CCCTAAACTTTTCCAAAATTATA-TTTTGA
* *
32778242 CACCTAAACTTCTCTAAAATTATATTTTGA
1 C-CCTAAACTTTTCCAAAATTATATTTTGA
* ** * *
32778272 CCCCTAAACTTCTGTAAAATTACATTTTAA
1 -CCCTAAACTTTTCCAAAATTATATTTTGA
* *
32778302 CCCCTAAAATTTTCCAAAATTAAATTTTGA
1 -CCCTAAACTTTTCCAAAATTATATTTTGA
* **
32778332 CCCTTAAAATTTTCCAAAATTGCATTTTGA
1 CCC-TAAACTTTTCCAAAATTATATTTTGA
* * *
32778362 CCCATAAACCTTTCCAAAATCATATTTTAA
1 CCC-TAAACTTTTCCAAAATTATATTTTGA
** * *
32778392 CCCTAAACTCCTCTAAAATCATAATTTT-A
1 CCCTAAACTTTTCCAAAATTAT-ATTTTGA
*
32778421 CCCTCAAACTTTTCTAAAATTATATTTTGA
1 CCCT-AAACTTTTCCAAAATTATATTTTGA
32778451 CCC
1 CCC
32778454 CGTATTCTCT
Statistics
Matches: 177, Mismatches: 29, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
29 28 0.16
30 130 0.73
31 19 0.11
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.37
Consensus pattern (29 bp):
CCCTAAACTTTTCCAAAATTATATTTTGA
Found at i:32778351 original size:60 final size:60
Alignment explanation
Indices: 32778210--32778454 Score: 237
Period size: 60 Copynumber: 4.1 Consensus size: 60
32778200 TACCCAAAAA
* * * *
32778210 ACCCCTAAACTTTTCCAAAATCACATTTTTGACACCTAAACTTCTCTAAAATTATATTTTG
1 ACCCCTAAACTTTTCCAAAATTACA-TTTTGACCCCTAAACTTTTCCAAAATTATATTTTG
* ** * * *
32778271 ACCCCTAAACTTCTGTAAAATTACATTTTAACCCCTAAAATTTTCCAAAATTAAATTTTG
1 ACCCCTAAACTTTTCCAAAATTACATTTTGACCCCTAAACTTTTCCAAAATTATATTTTG
* * * * * *
32778331 ACCCTTAAAATTTTCCAAAATTGCATTTTGACCCATAAACCTTTCCAAAATCATATTTT-
1 ACCCCTAAACTTTTCCAAAATTACATTTTGACCCCTAAACTTTTCCAAAATTATATTTTG
* ** * *
32778390 AACCCTAAACTCCTCTAAAATCATA-ATTTT-A-CCCTCAAACTTTTCTAAAATTATATTTTG
1 ACCCCTAAACTTTTCCAAAAT--TACATTTTGACCCCT-AAACTTTTCCAAAATTATATTTTG
32778450 ACCCC
1 ACCCC
32778455 GTATTCTCTG
Statistics
Matches: 146, Mismatches: 34, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
58 3 0.02
59 36 0.25
60 85 0.58
61 22 0.15
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.37
Consensus pattern (60 bp):
ACCCCTAAACTTTTCCAAAATTACATTTTGACCCCTAAACTTTTCCAAAATTATATTTTG
Found at i:32778370 original size:90 final size:91
Alignment explanation
Indices: 32778209--32778453 Score: 275
Period size: 90 Copynumber: 2.7 Consensus size: 91
32778199 TTACCCAAAA
* *
32778209 AACCCCTAAACTTTTCCAAAATCACATTTTTGACACC-TAAACTTCTCTAAAATTATATTTTGAC
1 AACCCCTAAACTTTTCCAAAATCACAATTTTGAC-CCTTAAACTTTTCTAAAATTATATTTTGAC
* ** *
32778273 CCCTAAA-CTTCTGTAAAATTACATTTT
65 CCATAAACCTT-TCCAAAATCACATTTT
* * * * **
32778300 AACCCCTAAAATTTTCCAAAATTA-AATTTTGACCCTTAAAATTTTCCAAAATTGCATTTTGACC
1 AACCCCTAAACTTTTCCAAAATCACAATTTTGACCCTTAAACTTTTCTAAAATTATATTTTGACC
*
32778364 CATAAACCTTTCCAAAATCATATTTT
66 CATAAACCTTTCCAAAATCACATTTT
** * * *
32778390 AA-CCCTAAACTCCTCTAAAATCATAATTTT-ACCCTCAAACTTTTCTAAAATTATATTTTGACC
1 AACCCCTAAACTTTTCCAAAATCACAATTTTGACCCTTAAACTTTTCTAAAATTATATTTTGACC
32778453 C
66 C
32778454 CGTATTCTCT
Statistics
Matches: 128, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
89 47 0.37
90 56 0.44
91 25 0.20
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.37
Consensus pattern (91 bp):
AACCCCTAAACTTTTCCAAAATCACAATTTTGACCCTTAAACTTTTCTAAAATTATATTTTGACC
CATAAACCTTTCCAAAATCACATTTT
Found at i:32783882 original size:39 final size:37
Alignment explanation
Indices: 32783830--32784405 Score: 241
Period size: 39 Copynumber: 14.8 Consensus size: 37
32783820 TCACCATCAG
* *
32783830 CCAATCTCTTACCCCGAGCCTAGGGTAGATTGCAGCCAT
1 CCAATCTCTTACCCCGAGCCTGGGGCAGATT-CA-CCAT
* * * * * *
32783869 CCGATCTTTTACCCTGAGCTTGAGGTAGA-TCACCAT
1 CCAATCTCTTACCCCGAGCCTGGGGCAGATTCACCAT
*
32783905 CAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCAT
1 ---CCAATCTCTTACCCCGAGCCTGGGGCAGATT-CA-CCAT
* * * * * *
32783947 CCGATCTTTTACCCTGAGCTTGAGGTAGA-TCACCAT
1 CCAATCTCTTACCCCGAGCCTGGGGCAGATTCACCAT
* *
32783983 CAACAAATCTCTTACCTCGAGCCTAGGGCAGATTACAGCCAAT
1 C--C-AATCTCTTACCCCGAGCCTGGGGCAGATT-CA-CC-AT
* * * * * *
32784026 -CGATCTTTTA-CCCAAGCTTGGGGCAGATCATCATCAG
1 CCAATCTCTTACCCCGAGCCTGGGGCAGAT--TCACCAT
* *
32784063 CCAATCTCTTACCCCGAGCTTGGGGCAGATTGTAACCAT
1 CCAATCTCTTACCCCGAGCCTGGGGCAGA-T-TCACCAT
* * * *
32784102 TCAATCTTTTACCCCGATCATGGGGCAGA-TCACCAT
1 CCAATCTCTTACCCCGAGCCTGGGGCAGATTCACCAT
* **
32784138 CAGCCAATATCTTACCTTGAGCCTGGGGCAGATTACAGCCAT
1 ---CCAATCTCTTACCCCGAGCCTGGGGCAGATT-CA-CCAT
* * * * * *
32784180 TCGATCTTTTACCCCGATCATGGGGCAG-GTCACCAT
1 CCAATCTCTTACCCCGAGCCTGGGGCAGATTCACCAT
** * * *
32784216 CAACCAATCTCTTACCCCGAGCCTAAGGTAGATTGTAGCCAA
1 ---CCAATCTCTTACCCCGAGCCTGGGGCAGATT-CA-CCAT
* * *
32784258 CCGATCTTTTACCCCAAGCCTGGGGCAGA-TCACCAT
1 CCAATCTCTTACCCCGAGCCTGGGGCAGATTCACCAT
** * * * *
32784294 CAGCAAATCTCTTACCCTAAGCTTAGGGCAGATTGCAGCTAA
1 C--C-AATCTCTTACCCCGAGCCTGGGGCAGATT-CA-CCAT
* * * * *
32784336 CCGATCTTTTACCCCGAGCTTGAGGCAGA-TCACCGT
1 CCAATCTCTTACCCCGAGCCTGGGGCAGATTCACCAT
* * *
32784372 CAGACAATCTCTTACCTCGAGCCTAGGGTAGATT
1 C---CAATCTCTTACCCCGAGCCTGGGGCAGATT
32784406 GTAGTCATTC
Statistics
Matches: 391, Mismatches: 106, Indels: 79
0.68 0.18 0.14
Matches are distributed among these distances:
36 25 0.06
37 10 0.03
38 30 0.08
39 289 0.74
40 10 0.03
41 9 0.02
42 16 0.04
43 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
CCAATCTCTTACCCCGAGCCTGGGGCAGATTCACCAT
Found at i:32784486 original size:78 final size:78
Alignment explanation
Indices: 32783816--32784468 Score: 770
Period size: 78 Copynumber: 8.4 Consensus size: 78
32783806 AGAAGTTTGA
*
32783816 CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGTAGATTGCAGCCATCCGATCTTTTAC
1 CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATCCGATCTTTTAC
* *
32783881 CCTGAGCTTGAGG
66 CCCGAGCTTGGGG
*
32783894 TAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATCCGATCTTTTAC
1 CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATCCGATCTTTTAC
* *
32783959 CCTGAGCTTGAGG
66 CCCGAGCTTGGGG
* * * * *
32783972 TAGATCACCATCAACAAATCTCTTACCTCGAGCCTAGGGCAGATTACAGCCAAT-CGATCTTTTA
1 CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCC-ATCCGATCTTTTA
*
32784036 -CCCAAGCTTGGGG
65 CCCCGAGCTTGGGG
* * * * * * *
32784049 CAGATCATCATCAGCCAATCTCTTACCCCGAGCTTGGGGCAGATTGTAACCATTCAATCTTTTAC
1 CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATCCGATCTTTTAC
* *
32784114 CCCGATCATGGGG
66 CCCGAGCTTGGGG
* ** * * *
32784127 CAGATCACCATCAGCCAATATCTTACCTTGAGCCTGGGGCAGATTACAGCCATTCGATCTTTTAC
1 CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATCCGATCTTTTAC
* *
32784192 CCCGATCATGGGG
66 CCCGAGCTTGGGG
* * * * * *
32784205 CAGGTCACCATCAACCAATCTCTTACCCCGAGCCTAAGGTAGATTGTAGCCAACCGATCTTTTAC
1 CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATCCGATCTTTTAC
* *
32784270 CCCAAGCCTGGGG
66 CCCGAGCTTGGGG
* ** * * *
32784283 CAGATCACCATCAGCAAATCTCTTACCCTAAGCTTAGGGCAGATTGCAGCTAACCGATCTTTTAC
1 CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATCCGATCTTTTAC
*
32784348 CCCGAGCTTGAGG
66 CCCGAGCTTGGGG
* * * * * * * *
32784361 CAGATCACCGTCAGACAATCTCTTACCTCGAGCCTAGGGTAGATTGTAGTCATTCGACCTTTTAC
1 CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATCCGATCTTTTAC
* * *
32784426 CCTGATCATGGGG
66 CCCGAGCTTGGGG
* *
32784439 CAGATCACCGTCAGCCAATCTCTCACCCCG
1 CAGATCACCATCAGCCAATCTCTTACCCCG
32784469 CGATAGGGGC
Statistics
Matches: 491, Mismatches: 81, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
76 2 0.00
77 60 0.12
78 427 0.87
79 2 0.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (78 bp):
CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATCCGATCTTTTAC
CCCGAGCTTGGGG
Found at i:32784883 original size:124 final size:124
Alignment explanation
Indices: 32784660--32784934 Score: 469
Period size: 124 Copynumber: 2.2 Consensus size: 124
32784650 TTTCAAATCC
* * * *
32784660 CATCTTCCTGGTGAAATACGGAGAAGTAGACCAATTCAATGAAGCGAAGCTCAATGTGAGTGAAA
1 CATCTTCCTGATGAGATACAGAGAAGTAGACCAATTCAATGAAGCGAAGCTCAATATGAGTGAAA
*
32784725 CTTCCAAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGT
66 CTTCCAAACCCAATCTTCCTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGT
32784784 CATCTTCCTGATGAGATACAGAGAAGTAGACCAATTCAATGAAGCGAAGCTCAATATGAGTGAAA
1 CATCTTCCTGATGAGATACAGAGAAGTAGACCAATTCAATGAAGCGAAGCTCAATATGAGTGAAA
*
32784849 CTTCCAAACCCAATCTTCCTGATGAGATATAGAGAAGTGGGTCGAAGCAATAAAGTGGT
66 CTTCCAAACCCAATCTTCCTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGT
* * *
32784908 CATCTTCTTGACGAGATGCAGAGAAGT
1 CATCTTCCTGATGAGATACAGAGAAGT
32784935 GAACCAAATC
Statistics
Matches: 142, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
124 142 1.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (124 bp):
CATCTTCCTGATGAGATACAGAGAAGTAGACCAATTCAATGAAGCGAAGCTCAATATGAGTGAAA
CTTCCAAACCCAATCTTCCTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGT
Found at i:32786671 original size:30 final size:29
Alignment explanation
Indices: 32786570--32786924 Score: 363
Period size: 30 Copynumber: 12.0 Consensus size: 29
32786560 GGCAACCTCC
*
32786570 AAAC-TTTCCTAAAATTACATTTTGACCCT
1 AAACTTTTCC-AAAATTACATTTTAACCCT
* * *
32786599 AAACTTCTT-TAAAATTACAATTTAAACCT
1 AAACTT-TTCCAAAATTACATTTTAACCCT
* *
32786628 AAACTTCTCCAAAATTATATTTTAACCCTT
1 AAACTTTTCCAAAATTACATTTTAACCC-T
* *
32786658 AAGCTTTTCCAAAATTACATTTTGATCCCT
1 AAACTTTTCCAAAATTACATTTT-AACCCT
* *
32786688 AAAATTTTCCAAAATTGCATTTTAACCCCT
1 AAACTTTTCCAAAATTACATTTTAA-CCCT
* *
32786718 AAACTTCTCTAAAATTACATTTTAACCCCT
1 AAACTTTTCCAAAATTACATTTTAA-CCCT
*
32786748 AAACTTTACCAAAATTACATTTTAACCCCT
1 AAACTTTTCCAAAATTACATTTTAA-CCCT
* *
32786778 AAACTTTTCTAAAATTACATTTTCACCCTT
1 AAACTTTTCCAAAATTACATTTTAACCC-T
* *
32786808 AAACCTTTCCAAAATTACATTTTGACCCT
1 AAACTTTTCCAAAATTACATTTTAACCCT
** * *
32786837 AAACTCCTCCAAAATCACATTTTTACCCT
1 AAACTTTTCCAAAATTACATTTTAACCCT
* * *
32786866 CAAACTTTTCTAAAATCACATTTTTACCCTT
1 -AAACTTTTCCAAAATTACATTTTAACCC-T
** *
32786897 AAACTTTTTTAAAATTACATTTTGACCC
1 AAACTTTTCCAAAATTACATTTTAACCC
32786925 CGTATTCTCT
Statistics
Matches: 276, Mismatches: 41, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
28 1 0.00
29 70 0.25
30 198 0.72
31 7 0.03
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.38
Consensus pattern (29 bp):
AAACTTTTCCAAAATTACATTTTAACCCT
Found at i:32786887 original size:89 final size:87
Alignment explanation
Indices: 32786570--32786924 Score: 401
Period size: 89 Copynumber: 4.0 Consensus size: 87
32786560 GGCAACCTCC
* *
32786570 AAACTTTCCTAAAATTACATTTTGACCCTAAACTTCTT-TAAAATTACAATTTAAACC-TAAACT
1 AAACTTTCC-AAAATTACATTTTGACCCTAAACTT-TTCTAAAATTACATTTTAACCCTTAAACT
*
32786633 TCTCCAAAATTATATTTTAACCCTT
64 TCTCCAAAATTACATTTTAACCC-T
* * * * *
32786658 AAGCTTTTCCAAAATTACATTTTGATCCCTAAAATTTTCCAAAATTGCATTTTAACCCCTAAACT
1 AAAC-TTTCCAAAATTACATTTTGA-CCCTAAACTTTTCTAAAATTACATTTTAACCCTTAAACT
*
32786723 TCTCTAAAATTACATTTTAACCCCT
64 TCTCCAAAATTACATTTTAA-CCCT
* *
32786748 AAACTTTACCAAAATTACATTTTAACCCCTAAACTTTTCTAAAATTACATTTTCACCCTTAAACC
1 AAACTTT-CCAAAATTACATTTTGA-CCCTAAACTTTTCTAAAATTACATTTTAACCCTTAAA-C
*
32786813 TT-TCCAAAATTACATTTTGACCCT
63 TTCTCCAAAATTACATTTTAACCCT
* * * * *
32786837 AAACTCCTCCAAAATCACATTTTTACCCTCAAACTTTTCTAAAATCACATTTTTACCCTTAAACT
1 AAACT-TTCCAAAATTACATTTTGACCCT-AAACTTTTCTAAAATTACATTTTAACCCTTAAACT
* ** *
32786902 TTTTTAAAATTACATTTTGACCC
64 TCTCCAAAATTACATTTTAACCC
32786925 CGTATTCTCT
Statistics
Matches: 232, Mismatches: 25, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
88 27 0.12
89 106 0.46
90 93 0.40
91 6 0.03
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.38
Consensus pattern (87 bp):
AAACTTTCCAAAATTACATTTTGACCCTAAACTTTTCTAAAATTACATTTTAACCCTTAAACTTC
TCCAAAATTACATTTTAACCCT
Found at i:32795326 original size:25 final size:25
Alignment explanation
Indices: 32795298--32795355 Score: 84
Period size: 24 Copynumber: 2.4 Consensus size: 25
32795288 TATTTTTCTC
32795298 ATAAAAATAAAAAAT-TATAAAAAAT
1 ATAAAAATAAAAAATAT-TAAAAAAT
32795323 AT-AAAATAAAAAATATTAAAAAAT
1 ATAAAAATAAAAAATATTAAAAAAT
*
32795347 TTAAAAATA
1 ATAAAAATA
32795356 GGAAAATTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 21 0.70
25 9 0.30
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (25 bp):
ATAAAAATAAAAAATATTAAAAAAT
Found at i:32795333 original size:14 final size:15
Alignment explanation
Indices: 32795314--32795343 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
32795304 ATAAAAAATT
32795314 ATAAAAAATA-TAAA
1 ATAAAAAATATTAAA
32795328 ATAAAAAATATTAAA
1 ATAAAAAATATTAAA
32795343 A
1 A
32795344 AATTTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
ATAAAAAATATTAAA
Found at i:32795413 original size:26 final size:23
Alignment explanation
Indices: 32795378--32795441 Score: 74
Period size: 26 Copynumber: 2.6 Consensus size: 23
32795368 TAAACTTGTA
* *
32795378 AAAATTATAAAATCATAAAAATCT
1 AAAATTATAAAAT-AAAAAAATAT
32795402 AATAAATTATAAAATAAAAAAATAT
1 -A-AAATTATAAAATAAAAAAATAT
32795427 AAAATTAATAAAATA
1 AAAATT-ATAAAATA
32795442 TATTTAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 5 0.14
24 9 0.26
25 9 0.26
26 12 0.34
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (23 bp):
AAAATTATAAAATAAAAAAATAT
Found at i:32795439 original size:16 final size:16
Alignment explanation
Indices: 32795378--32795443 Score: 73
Period size: 15 Copynumber: 4.1 Consensus size: 16
32795368 TAAACTTGTA
32795378 AAAATT-ATAAAATCAT
1 AAAATTAATAAAAT-AT
*
32795394 AAAAATCTAATAAATTAT
1 -AAAAT-TAATAAAATAT
*
32795412 AAAA-TAAAAAAATAT
1 AAAATTAATAAAATAT
32795427 AAAATTAATAAAATAT
1 AAAATTAATAAAATAT
32795443 A
1 A
32795444 TTTAAAATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
15 13 0.31
16 11 0.26
17 9 0.21
18 3 0.07
19 6 0.14
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATTAATAAAATAT
Found at i:32795480 original size:21 final size:22
Alignment explanation
Indices: 32795447--32795496 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
32795437 AAATATATTT
*
32795447 AAAAT-AT-TTAAAATTTTATA
1 AAAATCATATTAAAATTCTATA
32795467 AAAA-CATATTAAAATTCTATA
1 AAAATCATATTAAAATTCTATA
32795488 AAAATCATA
1 AAAATCATA
32795497 AATATTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 6 0.23
21 16 0.62
22 4 0.15
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAATCATATTAAAATTCTATA
Found at i:32795558 original size:29 final size:29
Alignment explanation
Indices: 32795464--32795560 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
32795454 TTAAAATTTT
* *
32795464 ATAAAAACATATTAAAATTCTATAAAAATC
1 ATAAAAACTTATTAAAATT-AATAAAAATC
* * * * *
32795494 ATAAATA-TTATTAAAAGTATTAAAATTG
1 ATAAAAACTTATTAAAATTAATAAAAATC
* * *
32795522 ATATAAACTTATGAAAATTAAAAAAAATC
1 ATAAAAACTTATTAAAATTAATAAAAATC
32795551 ATAAAAACTT
1 ATAAAAACTT
32795561 GAACAATACC
Statistics
Matches: 50, Mismatches: 16, Indels: 3
0.72 0.23 0.04
Matches are distributed among these distances:
28 11 0.22
29 33 0.66
30 6 0.12
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (29 bp):
ATAAAAACTTATTAAAATTAATAAAAATC
Found at i:32796052 original size:27 final size:27
Alignment explanation
Indices: 32796013--32796067 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
32796003 TTAAATAAGT
*
32796013 TTTATTAATTTTAGAATTTTTTTATAA
1 TTTATTAATTTTAGAATATTTTTATAA
**
32796040 TTTATTAGA-TTTATTATATTTTTATAA
1 TTTATTA-ATTTTAGAATATTTTTATAA
32796067 T
1 T
32796068 ATTTATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.64
Consensus pattern (27 bp):
TTTATTAATTTTAGAATATTTTTATAA
Found at i:32796063 original size:20 final size:20
Alignment explanation
Indices: 32796040--32796090 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
32796030 TTTTTTATAA
* *
32796040 TTTATTAGATTTATTATATT
1 TTTATAAGATTTATAATATT
*
32796060 TTTATAATATTTATAATA-T
1 TTTATAAGATTTATAATATT
32796079 TTTATAAG-TTTA
1 TTTATAAGATTTA
32796091 ATAAGTTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 4 0.15
19 8 0.30
20 15 0.56
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (20 bp):
TTTATAAGATTTATAATATT
Found at i:32796141 original size:17 final size:17
Alignment explanation
Indices: 32796121--32796155 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32796111 ATATATAATA
32796121 TATT-TTTAATAATTTTT
1 TATTGTTTAAT-ATTTTT
32796138 TATTGTTTAATATTTTT
1 TATTGTTTAATATTTTT
32796155 T
1 T
32796156 CATGAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
TATTGTTTAATATTTTT
Found at i:32812552 original size:12 final size:12
Alignment explanation
Indices: 32812535--32812563 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
32812525 GAACGAGGAG
32812535 GAAGAGAAAGAA
1 GAAGAGAAAGAA
32812547 GAAGAGAAAGAA
1 GAAGAGAAAGAA
32812559 GAAGA
1 GAAGA
32812564 AGAACCTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (12 bp):
GAAGAGAAAGAA
Found at i:32813004 original size:17 final size:18
Alignment explanation
Indices: 32812982--32813022 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
32812972 TTAGTTTTCA
32812982 TGCATTCTT-ATTGT-GCT
1 TGCATTCTTAATTGTCG-T
32812999 TGCATT-TTAATTGTCGT
1 TGCATTCTTAATTGTCGT
32813016 TGCATTC
1 TGCATTC
32813023 CTTTCAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 2 0.10
17 18 0.86
18 1 0.05
ACGTcount: A:0.15, C:0.17, G:0.17, T:0.51
Consensus pattern (18 bp):
TGCATTCTTAATTGTCGT
Found at i:32815648 original size:588 final size:588
Alignment explanation
Indices: 32813509--32816123 Score: 2740
Period size: 588 Copynumber: 4.5 Consensus size: 588
32813499 AGAGTGTGTT
* *
32813509 AAATGATGAATCAAAACAAGGAATGCCAAATATTTATGGGAAGAGACGGGTTCATGAATTTTTTT
1 AAATGAAGAATCAAAACAAGGAATGCCAAATATTTATGAGAAGAGAC-GGTTCATGAA-TTTTTT
* * *
32813574 GATTTTAACGTTACTAAATTAACGATAGAGGAAGTTAAAGCAATGGAATTCAACAACTTAGATGA
64 GATTTTAACGTTACTAAATTAACGACAGAGGAAGTTAAAGAAATGAAATTCAACAACTTAGATGA
* * * * *
32813639 TGCTCAATCAATTTATCTAAGCTATGTTCATATCTAAGAAATGGAAGTTCATGTCAGATTTTTAT
129 TCCTCAATCATTTTATCTAAGCTATGCTCATATCTAAGCAATGGAAGTTCACGT-AGATTTTT-T
* ** * * *
32813704 AGATAATTGTGTTATTACTG-T--ACCAATTTTACCGGTTCAATCTACAAGCAAGTGATTTTTTA
192 AGATAATTGTGTTATTACCGTTCCACCAATTCAACCGATTCCATCTACAAGCAAGGGATTTTTTA
* * * * * * ** *
32813766 ACGAAGCTTCAACGGAAAGAAATACTATTCTCTCTCTATTGAAACTTAAAAATCTGAAAATTTTA
257 GCAAAGCTTCAACGGAAAGAAAAACCATTCTCTCTCTATTGCAACATACTAATCTGAAAAATTTA
* * * *
32813831 GATCATAACAGTTAAACCCTTTGAGAACGACAACAAAATTACAAAGTTC-AGATGTGGCCATCTT
322 GACCATAACTGTTAAACCCATTGAGAACGACAACAAAATTACAAACTTCAAG-TGTGGCCAT-TT
* * *
32813895 -ATAATCTTTGAAGACTTAGATTAATCGAGATTTTGGTTCAAAGTATTGGGGAAAAGTTTGAAAC
385 GATAATCTTTGAAGACATAGATTAATCGAGATTTCGGTTCAAAGTATAGGGGAAAAGTTTGAAAC
*
32813959 TG-T-T---G-----T-ATTGGTAAGTACGTTTATTTTTTAGACTATGCATGATTAAATCTGAAA
450 TGTTGTCAAGTACCTTAATTGGTAAGTACGTTTATTTTTGAGACTATGCATGATTAAATCTGAAA
* * * * * *
32814013 AATTGTAGTTGTAAATAGGAAACTATTTAAGATTGGTTGAATGTTTAAGGTAATAA-ATAGATGA
515 AATTGTACTTGTAAATAGGAAACTATTTAAGAATGGTTGAATATTTAAGGCAAGAACAGAGATGA
32814077 TATTCTG-G
580 TATTCTGTG
* * *
32814085 TAAATGAATAATCAAAACAAGGAATGCCAAATATTTATGAGAAGAAACGGGTTCAGGAATTTTTT
1 -AAATGAAGAATCAAAACAAGGAATGCCAAATATTTATGAGAAGAGAC-GGTTCATGAATTTTTT
* * * * *
32814150 GATTTTAACGTCAATAAATTAACGACAGAGGAAGTTAAAGTAATAAAATTCAATAACTTAGATGA
64 GATTTTAACGTTACTAAATTAACGACAGAGGAAGTTAAAGAAATGAAATTCAACAACTTAGATGA
* * * * *
32814215 -CACACAATCATTTT-TTTAAGCTATGCTCATATCTAAGCAATGGAAGTTCACCTCGAATTTTAT
129 TC-CTCAATCATTTTATCTAAGCTATGCTCATATCTAAGCAATGGAAGTTCACGTAG-ATTTTTT
* * * * * * *
32814278 GGATATTTGTGTTATTACTGTTCCACCAATTCAACTGCTTCCATCTAAAAGCAAGGGATTTTTCA
192 AGATAATTGTGTTATTACCGTTCCACCAATTCAACCGATTCCATCTACAAGCAAGGGATTTTTTA
* * * * * * *
32814343 GTGAAA-CTTCAACGGAATGAAATACCATTCTCTCTCTGTTGTAACATACTAATTTGAAAATTTT
257 G-CAAAGCTTCAACGGAAAGAAAAACCATTCTCTCTCTATTGCAACATACTAATCTGAAAAATTT
* * *
32814407 AGACCATAACTGTTAAACCCATTGAGAACGACAACAAAATTACAAACTTTAGGTGTGGCCATGTG
321 AGACCATAACTGTTAAACCCATTGAGAACGACAACAAAATTACAAACTTCAAGTGTGGCCATTTG
* * * * *
32814472 ATAATCTTTGAAGACGTAGATTTATCGAGATTTCGATTCAAAGTACTA-GGGAAAAGGTTGAAAT
386 ATAATCTTTGAAGACATAGATTAATCGAGATTTCGGTTCAAAGTA-TAGGGGAAAAGTTTGAAAC
* * * *
32814536 TGTTGTCATGTACCTTAATTGGTTAA-TGCGATTATTTTTGAGACTATACATGATTAAA-CATGA
450 TGTTGTCAAGTACCTTAATTGG-TAAGTACGTTTATTTTTGAGACTATGCATGATTAAATC-TGA
* * *
32814599 AAAATTGTACTTGTAAATATGAAACTCTTTAAGAATGGTTGAATATTTAAGG-AAGCACAGAGAT
513 AAAATTGTACTTGTAAATAGGAAACTATTTAAGAATGGTTGAATATTTAAGGCAAGAACAGAGAT
* * *
32814663 TATATTCTATT
578 GATATTCTGTG
* *
32814674 AAATGAAGAATCAAAATAAGAAATGCCAAATATTTATGAGAAGAGACGGGTTCATGAATTTTTTG
1 AAATGAAGAATCAAAACAAGGAATGCCAAATATTTATGAGAAGAGAC-GGTTCATGAATTTTTTG
* * * * ** *
32814739 ATTTTAACGTTACTAAATTAATGACAAAAGAAGTTAAATAAATGGGATTCAACAATTTAGATGAT
65 ATTTTAACGTTACTAAATTAACGACAGAGGAAGTTAAAGAAATGAAATTCAACAACTTAGATGAT
* * * * * * * * *
32814804 GCTAAATCTTTTTATCTAAGATGTGCTCATATCTAAGCAATGGAAGTTTATGCCAGATTTTGTAG
130 CCTCAATCATTTTATCTAAGCTATGCTCATATCTAAGCAATGGAAGTTCACG-TAGATTTTTTAG
** * * **
32814869 ATAGCTGTGTTATTACCGTTCCACCAATTCAACCAATTCCATCTACAATCAAGATATTTTTTAGC
194 ATAATTGTGTTATTACCGTTCCACCAATTCAACCGATTCCATCTACAAGCAAGGGATTTTTTAGC
* *
32814934 GAAGCTTCAAGGGAAA-AAAATACCATTCTCTCTCTATTGCAACATACTAATCTGAAAAATTTAG
259 AAAGCTTCAACGGAAAGAAAA-ACCATTCTCTCTCTATTGCAACATACTAATCTGAAAAATTTAG
* * * * * * * *
32814998 ACCCTTATTATTGAACCCATTGAGAAC-ATTAACAAAATTACAAATTTCAGGTGTGGCCATTTGA
323 ACCATAACTGTTAAACCCATTGAGAACGA-CAACAAAATTACAAACTTCAAGTGTGGCCATTTGA
* * * *
32815062 TAATCTTTGAAGATATTGATTAATCGAGGTTTCGGTTCAAAGTATAGGGGAAAAGTTTGAAATTG
387 TAATCTTTGAAGACATAGATTAATCGAGATTTCGGTTCAAAGTATAGGGGAAAAGTTTGAAACTG
* *
32815127 TTGTCAAGTACCTTAATTGGTAAGTACGTTTATTTTTGACACTATGCATGATTAAATTTGAAAAA
452 TTGTCAAGTACCTTAATTGGTAAGTACGTTTATTTTTGAGACTATGCATGATTAAATCTGAAAAA
** * ** * * *
32815192 TAATACTTATAAATAGGAAACTATTTAAGAATGGCAGAATGTTTAGGGCAA-AACAAAGATGATA
517 TTGTACTTGTAAATAGGAAACTATTTAAGAATGGTTGAATATTTAAGGCAAGAACAGAGATGATA
*
32815256 TTTTGTG
582 TTCTGTG
* * *
32815263 GAATGAAAAATCAAAACAAGAAATGCCAAATATTTAT-AGGAAGAGA-GGTTCAT-AATTTTTTT
1 AAATGAAGAATCAAAACAAGGAATGCCAAATATTTATGA-GAAGAGACGGTTCATGAA---TTTT
* * * *
32815325 TTG-TTTTACCTTTACTAAATTAACGACAGAGGAAATTAAAGAAATGAAACTCAACAACTTAGAT
62 TTGATTTTAACGTTACTAAATTAACGACAGAGGAAGTTAAAGAAATGAAATTCAACAACTTAGAT
* * * * *
32815389 GATCCTCAATCGTTTTATCTAAGTTATGGTCATATATAAGCAATGGAAGTTCACGTTGTATTTTT
127 GATCCTCAATCATTTTATCTAAGCTATGCTCATATCTAAGCAATGGAAGTTCACGTAG-ATTTTT
** * * * *
32815454 TAGATAATTGTGTTATTACCGTTCCACCAATTCAATTGATGCCATCTTCAAGAAAGGGTTTTTTT
191 TAGATAATTGTGTTATTACCGTTCCACCAATTCAACCGATTCCATCTACAAGCAAGGGATTTTTT
** * * *
32815519 AGCAAAGCTTCAACATAAAGAAAAACAATTCTCTCTCTATTGCAACATTCTAATATGAAAAATTT
256 AGCAAAGCTTCAACGGAAAGAAAAACCATTCTCTCTCTATTGCAACATACTAATCTGAAAAATTT
* * * * * *
32815584 AGACCCTAATTGTTAAAGCCATTGAAAACGACAACAAAATTACAAACTTCAAGTGCGACCATTTG
321 AGACCATAACTGTTAAACCCATTGAGAACGACAACAAAATTACAAACTTCAAGTGTGGCCATTTG
* * **
32815649 ATAATCTTTAAAGACATAGATTAATTGAGATTTCGGTTCAAAGTATTTGGGAAAAGTTTGAAACT
386 ATAATCTTTGAAGACATAGATTAATCGAGATTTCGGTTCAAAGTATAGGGGAAAAGTTTGAAACT
* * * * *
32815714 GTTGTGAAGTACCTTAATTGGTATGTACGTTCAATTTTGAGAATATGCATGATTAAATCTGAAAA
451 GTTGTCAAGTACCTTAATTGGTAAGTACGTTTATTTTTGAGACTATGCATGATTAAATCTG-AAA
* * * ** *
32815779 AATTGTACTTGTAAA-AAGAAATTGTTTAAGAATGGTTGAATATTTTGGGCAA-CACAGAGATGA
515 AATTGTACTTGTAAATAGGAAACTATTTAAGAATGGTTGAATATTTAAGGCAAGAACAGAGATGA
* *
32815842 TATTATGTT
580 TATTCTGTG
32815851 AAATGAAGAATCAAAACAAGGAATGCCAAATATTTATGAGAAGAGA-----C-------------
1 AAATGAAGAATCAAAACAAGGAATGCCAAATATTTATGAGAAGAGACGGTTCATGAATTTTTTGA
* * * *
32815898 ---T----TTACTAAATTAATGGCAGAGGAAGTTAAAGTAATGAAATTCAACAACTTAGATGATG
66 TTTTAACGTTACTAAATTAACGACAGAGGAAGTTAAAGAAATGAAATTCAACAACTTAGATGATC
* * * * * * * * * *
32815956 CACAATCGTTTTATCTAATCTATGCTTATATCTAAGCAAAGGATGTTCACGTTGGACTTTGTGGA
131 CTCAATCATTTTATCTAAGCTATGCTCATATCTAAGCAATGGAAGTTCACG-TAGATTTTTTAGA
* * ** * * *
32816021 TAATTGTGTTATTACTGTTCCGCCAATTCAACCTTTTCTAACTACAAGAAAGGGATTTTTTTAGG
195 TAATTGTGTTATTACCGTTCCACCAATTCAACCGATTCCATCTACAAGCAAGGGA-TTTTTTA-G
* * *
32816086 GAAA-CTTCAATGGAAAGAAATACCATTCTCTCTCTATT
258 CAAAGCTTCAACGGAAAGAAAAACCATTCTCTCTCTATT
32816124 TTTAGGGAAA
Statistics
Matches: 1710, Mismatches: 282, Indels: 105
0.82 0.13 0.05
Matches are distributed among these distances:
563 145 0.08
564 38 0.02
565 4 0.00
567 1 0.00
574 20 0.01
575 40 0.02
576 75 0.04
577 247 0.14
578 5 0.00
579 1 0.00
582 1 0.00
584 1 0.00
586 2 0.00
587 13 0.01
588 686 0.40
589 428 0.25
590 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (588 bp):
AAATGAAGAATCAAAACAAGGAATGCCAAATATTTATGAGAAGAGACGGTTCATGAATTTTTTGA
TTTTAACGTTACTAAATTAACGACAGAGGAAGTTAAAGAAATGAAATTCAACAACTTAGATGATC
CTCAATCATTTTATCTAAGCTATGCTCATATCTAAGCAATGGAAGTTCACGTAGATTTTTTAGAT
AATTGTGTTATTACCGTTCCACCAATTCAACCGATTCCATCTACAAGCAAGGGATTTTTTAGCAA
AGCTTCAACGGAAAGAAAAACCATTCTCTCTCTATTGCAACATACTAATCTGAAAAATTTAGACC
ATAACTGTTAAACCCATTGAGAACGACAACAAAATTACAAACTTCAAGTGTGGCCATTTGATAAT
CTTTGAAGACATAGATTAATCGAGATTTCGGTTCAAAGTATAGGGGAAAAGTTTGAAACTGTTGT
CAAGTACCTTAATTGGTAAGTACGTTTATTTTTGAGACTATGCATGATTAAATCTGAAAAATTGT
ACTTGTAAATAGGAAACTATTTAAGAATGGTTGAATATTTAAGGCAAGAACAGAGATGATATTCT
GTG
Found at i:32816671 original size:13 final size:14
Alignment explanation
Indices: 32816653--32816682 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
32816643 GTCAATGCAA
32816653 TCAGA-GTTAAATG
1 TCAGAGGTTAAATG
32816666 TCAGAGGTTAAATG
1 TCAGAGGTTAAATG
32816680 TCA
1 TCA
32816683 ATATACTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (14 bp):
TCAGAGGTTAAATG
Found at i:32818224 original size:16 final size:16
Alignment explanation
Indices: 32818203--32818233 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32818193 TTATCAAATA
*
32818203 TTTCTTTCTTTTTCTT
1 TTTCTTCCTTTTTCTT
32818219 TTTCTTCCTTTTTCT
1 TTTCTTCCTTTTTCT
32818234 CATTTTGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTCTTCCTTTTTCTT
Found at i:32827187 original size:13 final size:14
Alignment explanation
Indices: 32827169--32827198 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
32827159 GTCAATGCAA
32827169 TCAGA-GTTAAATG
1 TCAGAGGTTAAATG
32827182 TCAGAGGTTAAATG
1 TCAGAGGTTAAATG
32827196 TCA
1 TCA
32827199 ATGTACTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (14 bp):
TCAGAGGTTAAATG
Found at i:32829109 original size:34 final size:34
Alignment explanation
Indices: 32829066--32829134 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
32829056 AATTGGTAAG
32829066 TACATTTATTTTTGAGATTATACATGGTTAAATC
1 TACATTTATTTTTGAGATTATACATGGTTAAATC
*
32829100 TACATTTATTTTTGAGATTGTACATGGTTAAATC
1 TACATTTATTTTTGAGATTATACATGGTTAAATC
32829134 T
1 T
32829135 GAAAAATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.48
Consensus pattern (34 bp):
TACATTTATTTTTGAGATTATACATGGTTAAATC
Found at i:32833320 original size:47 final size:46
Alignment explanation
Indices: 32833262--32833370 Score: 128
Period size: 46 Copynumber: 2.3 Consensus size: 46
32833252 GGCATTATGG
* * *
32833262 AATATGCCACACGGGCATCACAAAAATACTCCACAAAGGCTTTACAA
1 AATATGCCACACAGGCATCAC-AAAACACACCACAAAGGCTTTACAA
* * * *
32833309 AATATGGCACACATGCATCACAGAACACACCACAAAGGCTTTACAT
1 AATATGCCACACAGGCATCACAAAACACACCACAAAGGCTTTACAA
* *
32833355 AATACGCCACAAAGGC
1 AATATGCCACACAGGC
32833371 TTCATAGAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
46 33 0.65
47 18 0.35
ACGTcount: A:0.42, C:0.28, G:0.14, T:0.16
Consensus pattern (46 bp):
AATATGCCACACAGGCATCACAAAACACACCACAAAGGCTTTACAA
Found at i:32833364 original size:23 final size:23
Alignment explanation
Indices: 32833284--32833372 Score: 79
Period size: 23 Copynumber: 3.9 Consensus size: 23
32833274 GGGCATCACA
*
32833284 AAAATACTCCACAAAGGCTTTAC
1 AAAATACGCCACAAAGGCTTTAC
* * * * * *
32833307 AAAATATGGCACACATGCATCAC
1 AAAATACGCCACAAAGGCTTTAC
* * *
32833330 AGAACACACCACAAAGGCTTTAC
1 AAAATACGCCACAAAGGCTTTAC
*
32833353 ATAATACGCCACAAAGGCTT
1 AAAATACGCCACAAAGGCTT
32833373 CATAGAAAAT
Statistics
Matches: 47, Mismatches: 19, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.43, C:0.27, G:0.12, T:0.18
Consensus pattern (23 bp):
AAAATACGCCACAAAGGCTTTAC
Found at i:32856670 original size:3 final size:3
Alignment explanation
Indices: 32856621--32856651 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
32856611 AGACATTAGT
*
32856621 ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
32856652 AATTATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:32856864 original size:17 final size:16
Alignment explanation
Indices: 32856831--32856864 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32856821 AATATTTTAA
*
32856831 TAAAATAATCCAAATT
1 TAAAATAATCAAAATT
32856847 TAAAATAATTCAAAATT
1 TAAAATAA-TCAAAATT
32856864 T
1 T
32856865 GAGCAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (16 bp):
TAAAATAATCAAAATT
Found at i:32858673 original size:21 final size:21
Alignment explanation
Indices: 32858649--32858708 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
32858639 TTTTTTTAAC
*
32858649 TTGAATCCTCAACCTTAAATT
1 TTGAATCCTAAACCTTAAATT
* *
32858670 TTGAATTCTAAACCTTGAATT
1 TTGAATCCTAAACCTTAAATT
* *
32858691 TTAAACCCTAAA-CTTAAA
1 TTGAATCCTAAACCTTAAA
32858709 CTTTAAAACG
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 5 0.16
21 27 0.84
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.37
Consensus pattern (21 bp):
TTGAATCCTAAACCTTAAATT
Found at i:32861666 original size:21 final size:21
Alignment explanation
Indices: 32861637--32861680 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
32861627 TCATCCAACA
*
32861637 TAGCAAGTTAACTGGCCATGT
1 TAGCAAGTTAACTGGCCACGT
*
32861658 TAGCTAGTTAACTGGCCACGT
1 TAGCAAGTTAACTGGCCACGT
32861679 TA
1 TA
32861681 CCTGTCTCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (21 bp):
TAGCAAGTTAACTGGCCACGT
Found at i:32861752 original size:175 final size:174
Alignment explanation
Indices: 32861464--32861795 Score: 416
Period size: 175 Copynumber: 1.9 Consensus size: 174
32861454 GTCTAACGTG
* * *
32861464 GCAAGTTTATTGGCCACATTAGCTAATTTACTGGCCACATCACCTGTCTCGTTAGGCCTATAACA
1 GCAAGTTAACTGGCCACATTAGCTAATTAACTGGCCACATCACCTGTCTCGTTAGGCCTATAACA
* * *
32861529 GAAACTGTACATGAGTGACTCATTTGTCACTTTACGATAACATTAGTGACTGA-TTTGTTATTTT
66 GAAAATGTACATGAGTGACTAATTTGTAACTTTACGATAACATTAGTGACT-ATTTTGTTATTTT
** * *
32861593 TTTGAAAGTTGAGTGACTGAATTGAAACTTTGCATCATCCAACATA
130 TCCG-AAGTCGAGTGACTAAATTGAAACTTTGCATCATCCAACATA
** * * * * * *
32861639 GCAAGTTAACTGGCCATGTTAGCTAGTTAACTGGCCACGTTACCTGTCTCGTTAGGCTTGTAACG
1 GCAAGTTAACTGGCCACATTAGCTAATTAACTGGCCACATCACCTGTCTCGTTAGGCCTATAACA
* ** *
32861704 GAAAATGTTA-ATGGGTGACTAATTTGTAACTTTTTGATAACGTTAGTGACTATTTTGTTATTTT
66 GAAAATG-TACATGAGTGACTAATTTGTAACTTTACGATAACATTAGTGACTATTTTGTTATTTT
*
32861768 TCCGAAGTCGAGTTACTAAATTGAAACT
130 TCCGAAGTCGAGTGACTAAATTGAAACT
32861796 AGAGTGACTA
Statistics
Matches: 132, Mismatches: 23, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
174 22 0.17
175 108 0.82
176 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (174 bp):
GCAAGTTAACTGGCCACATTAGCTAATTAACTGGCCACATCACCTGTCTCGTTAGGCCTATAACA
GAAAATGTACATGAGTGACTAATTTGTAACTTTACGATAACATTAGTGACTATTTTGTTATTTTT
CCGAAGTCGAGTGACTAAATTGAAACTTTGCATCATCCAACATA
Done.