Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 11 of 171
Found at i:5113352 original size:36 final size:36
Alignment explanation
Indices: 5113305--5113377 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
5113295 CTCCTAGTAC
5113305 TCAAGATCCTAATCACTTCCTCGTTGTTAAAAGCCT
1 TCAAGATCCTAATCACTTCCTCGTTGTTAAAAGCCT
5113341 TCAAGATCCTAATCACTTCCTCGTTGTTAAAAGCCT
1 TCAAGATCCTAATCACTTCCTCGTTGTTAAAAGCCT
5113377 T
1 T
5113378 TCCATGGAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.34
Consensus pattern (36 bp):
TCAAGATCCTAATCACTTCCTCGTTGTTAAAAGCCT
Found at i:5118221 original size:18 final size:18
Alignment explanation
Indices: 5118198--5118233 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
5118188 ATTTATTTTC
*
5118198 GATAAAATTAAAATTAAT
1 GATAAAAATAAAATTAAT
5118216 GATAAAAATAAAATTAAT
1 GATAAAAATAAAATTAAT
5118234 AATTCTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
GATAAAAATAAAATTAAT
Found at i:5119879 original size:51 final size:51
Alignment explanation
Indices: 5119768--5119864 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 51
5119758 AGATTTTGAG
* * * * *
5119768 AAAAAAAATTTAGAGTTGGCCATGCATTGGCCGACACCAATATTTTTTATC
1 AAAAAAAAATTGGTGTTGGCCATGCATTGACCGACACCAACATTTTTTATC
**
5119819 AAAAAAAAATTGGTGTTGGCCATGCATTGATTGACACC-ACATTTTT
1 AAAAAAAAATTGGTGTTGGCCATGCATTGACCGACACCAACATTTTT
5119865 ATCTGATAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
50 7 0.18
51 32 0.82
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (51 bp):
AAAAAAAAATTGGTGTTGGCCATGCATTGACCGACACCAACATTTTTTATC
Found at i:5119968 original size:62 final size:62
Alignment explanation
Indices: 5119831--5120458 Score: 394
Period size: 62 Copynumber: 10.5 Consensus size: 62
5119821 AAAAAAATTG
*** * * *
5119831 GTGTTGGCCATGCATTGATTGACACCA-CATTTTTATCTGA-TAAAAA---AATATTTTTTT
1 GTGTTGGCCATGCATTGGCCGACACCACCTTTTTTATCTGACAAAAAATTCAAAATTTTTTT
* * *
5119888 GTGTTGGCCATTGC-TTGGCCGATACCACCTTTATTATCTGACAAAAAATT-AAATTTTTTTTT
1 GTGTTGGCCA-TGCATTGGCCGACACCACCTTTTTTATCTGACAAAAAATTCAAA-ATTTTTTT
* * ** *
5119950 GTGTTGGCCATACATTGGCCGACATCATGTTTTTTATCTGACAAAAAATTCAAAATTTTTTG
1 GTGTTGGCCATGCATTGGCCGACACCACCTTTTTTATCTGACAAAAAATTCAAAATTTTTTT
* * * * * *
5120012 GTGTTAGTCATTG-TTTGGCCGACACCACCTTTATTATCTGACAAAAATTTCAAATTTTTTTT
1 GTGTTGGCCA-TGCATTGGCCGACACCACCTTTTTTATCTGACAAAAAATTCAAAATTTTTTT
* * * * * *
5120074 ATGTTAGCCATTG-TTTGG-CGACACCATCTTTTTTGTCTGATAAAAAAATT-AAAATTTTTTT
1 GTGTTGGCCA-TGCATTGGCCGACACCACCTTTTTTATCTGA-CAAAAAATTCAAAATTTTTTT
* * * * *
5120135 GTGTTGGCCATGCATTGGCCGACACCAACATTTTTATC--AGATAAAA---AAAA--TTTTG
1 GTGTTGGCCATGCATTGGCCGACACCACCTTTTTTATCTGACAAAAAATTCAAAATTTTTTT
* * *
5120190 GTGTAGGCCATTGC-TTGGTCGACACCA-CTTTTTTATCTGATAAAAAATTC-AAATTTTTTT
1 GTGTTGGCCA-TGCATTGGCCGACACCACCTTTTTTATCTGACAAAAAATTCAAAATTTTTTT
* * * * *
5120250 AGTGTTGGCCATGCATTGGCCGATACCAGCATTTTTTTATC--A-GATAAA---AAAA---TTTG
1 -GTGTTGGCCATGCATTGGCCGACACCA-C-CTTTTTTATCTGACAAAAAATTCAAAATTTTTTT
* * ** * *
5120306 GTGTTGGTCATTGC-TT-GACGACACCATATTTTTTATCTGATAAAAAATT--TAATTTTTTT
1 GTGTTGGCCA-TGCATTGGCCGACACCACCTTTTTTATCTGACAAAAAATTCAAAATTTTTTT
* * * * * *
5120365 GGTGTTAGCCATGCATTAGCCGACATCACC-TTTTTATCAGATAAAAAAAT--AAATTTTTTT
1 -GTGTTGGCCATGCATTGGCCGACACCACCTTTTTTATCTGACAAAAAATTCAAAATTTTTTT
* ** *
5120425 GACGTTGGTTATGCATTGGCCGACACCAACTTTT
1 G-TGTTGGCCATGCATTGGCCGACACCACCTTTT
5120459 CATCATTTCT
Statistics
Matches: 448, Mismatches: 83, Indels: 76
0.74 0.14 0.13
Matches are distributed among these distances:
52 9 0.02
54 18 0.04
55 40 0.09
56 17 0.04
57 23 0.05
58 17 0.04
59 20 0.04
60 68 0.15
61 80 0.18
62 143 0.32
63 4 0.01
64 9 0.02
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (62 bp):
GTGTTGGCCATGCATTGGCCGACACCACCTTTTTTATCTGACAAAAAATTCAAAATTTTTTT
Found at i:5120213 original size:55 final size:55
Alignment explanation
Indices: 5120130--5120413 Score: 206
Period size: 55 Copynumber: 5.0 Consensus size: 55
5120120 AATTAAAATT
*
5120130 TTTTTGTGTTGGCCATGCATTGGCCGACACCAACATTTTTATCAGATAAAAAAAA
1 TTTTGGTGTTGGCCATGCATTGGCCGACACCAACATTTTTATCAGATAAAAAAAA
* * * *
5120185 TTTTGGTGTAGGCCATTGC-TTGGTCGACACC-ACTTTTTTATCTGATAAAAAATTCAAA
1 TTTTGGTGTTGGCCA-TGCATTGGCCGACACCAACATTTTTATCAGAT-AAAAA---AAA
* * *
5120243 TTTTTTTAGTGTTGGCCATGCATTGGCCGATACCAGCATTTTTTTATCAGAT-AAAAAAA
1 ---TTTTGGTGTTGGCCATGCATTGGCCGACACCAACA--TTTTTATCAGATAAAAAAAA
* * * *
5120302 -TTTGGTGTTGGTCATTGC-TT-GACGACACCATA-TTTTTTATCTGATAAAAAATTTAA
1 TTTTGGTGTTGGCCA-TGCATTGGCCGACACCA-ACATTTTTATCAGATAAAAAA---AA
* * * *
5120358 TTTTTTTGGTGTTAGCCATGCATTAGCCGACATC-ACCTTTTTATCAGATAAAAAAA
1 ---TTTTGGTGTTGGCCATGCATTGGCCGACACCAACATTTTTATCAGATAAAAAAA
5120414 TAAATTTTTT
Statistics
Matches: 179, Mismatches: 25, Indels: 48
0.71 0.10 0.19
Matches are distributed among these distances:
52 11 0.06
53 5 0.03
54 21 0.12
55 43 0.24
56 8 0.04
57 1 0.01
58 3 0.02
59 7 0.04
60 34 0.19
61 30 0.17
62 5 0.03
64 11 0.06
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (55 bp):
TTTTGGTGTTGGCCATGCATTGGCCGACACCAACATTTTTATCAGATAAAAAAAA
Found at i:5120256 original size:116 final size:114
Alignment explanation
Indices: 5119782--5120413 Score: 515
Period size: 116 Copynumber: 5.4 Consensus size: 114
5119772 AAAATTTAGA
*
5119782 GTTGGCCATGCATTGGCCGACACCAATATTTTTTATC--A-AAAAAAAA--TTGGTGTTGGCCA-
1 GTTGGCCATGCATTGGCCGACACC-ACA-TTTTTATCAGATAAAAAAAATTTTGGTGTTGGCCAT
* * * *
5119841 TGCATTGATTGACACCA-CATTTTTATCTGATAAAAAA--ATATTTTTTTGT
64 TGC-TTGGTCGACACCATCTTTTTTATCTGATAAAAAATTAAATTTTTTTGT
* * * * *
5119890 GTTGGCCATTGC-TTGGCCGATACCACCTTTATTATCTGACAAAAAATTAAATTTTTTTTTGTGT
1 GTTGGCCA-TGCATTGGCCGACACCACATTT-TTATCAGA-TAAAAA--AAA----TTTTGGTGT
* * * * * *
5119954 TGGCCA-TACATTGGCCGACATCATGTTTTTTATCTGACAAAAAATTCAAAATTTTTTGGT
57 TGGCCATTGC-TTGGTCGACACCATCTTTTTTATCTGATAAAAAATT--AAATTTTTTTGT
* * * * * * **
5120014 GTTAGTCATTG-TTTGGCCGACACCACCTTTATTATCTGACAAAAATTTCAAATTTTTTTTATGT
1 GTTGGCCA-TGCATTGGCCGACACCACATTT-TTATCAGATAAAAA----AAA---TTTTGGTGT
* * *
5120078 TAGCCATTGTTTGG-CGACACCATCTTTTTTGTCTGATAAAAAAATTAAAATTTTTTTGT
57 TGGCCATTGCTTGGTCGACACCATCTTTTTTATCTGAT-AAAAAATT-AAATTTTTTTGT
*
5120137 GTTGGCCATGCATTGGCCGACACCAACATTTTTATCAGATAAAAAAAATTTTGGTGTAGGCCATT
1 GTTGGCCATGCATTGGCCGACACC-ACATTTTTATCAGATAAAAAAAATTTTGGTGTTGGCCATT
5120202 GCTTGGTCGACACCA-CTTTTTTATCTGATAAAAAATTCAAATTTTTTTAGT
65 GCTTGGTCGACACCATCTTTTTTATCTGATAAAAAATT-AAATTTTTTT-GT
* *
5120253 GTTGGCCATGCATTGGCCGATACCAGCATTTTTTTATCAGAT-AAAAAAA-TTTGGTGTTGGTCA
1 GTTGGCCATGCATTGGCCGACACCA-CA--TTTTTATCAGATAAAAAAAATTTTGGTGTTGGCCA
* * *
5120316 TTGCTT-GACGACACCATATTTTTTATCTGATAAAAAATTTAATTTTTTTGGT
63 TTGCTTGGTCGACACCATCTTTTTTATCTGATAAAAAATTAAATTTTTTT-GT
* * * *
5120368 GTTAGCCATGCATTAGCCGACATCACCTTTTTATCAGATAAAAAAA
1 GTTGGCCATGCATTGGCCGACACCACATTTTTATCAGATAAAAAAA
5120414 TAAATTTTTT
Statistics
Matches: 438, Mismatches: 53, Indels: 61
0.79 0.10 0.11
Matches are distributed among these distances:
106 3 0.01
107 6 0.01
108 19 0.04
109 4 0.01
111 5 0.01
112 12 0.03
113 9 0.02
114 1 0.00
115 60 0.14
116 97 0.22
117 15 0.03
118 12 0.03
119 27 0.06
120 17 0.04
122 2 0.00
123 66 0.15
124 78 0.18
125 5 0.01
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.39
Consensus pattern (114 bp):
GTTGGCCATGCATTGGCCGACACCACATTTTTATCAGATAAAAAAAATTTTGGTGTTGGCCATTG
CTTGGTCGACACCATCTTTTTTATCTGATAAAAAATTAAATTTTTTTGT
Found at i:5121327 original size:18 final size:17
Alignment explanation
Indices: 5121310--5121368 Score: 58
Period size: 17 Copynumber: 3.7 Consensus size: 17
5121300 GAAATAAAAT
5121310 TTAAAATATAAACGAAA
1 TTAAAATATAAACGAAA
5121327 TTAGAAAT-T--A--AAA
1 TTA-AAATATAAACGAAA
5121340 TTAAAATATAAACGAAA
1 TTAAAATATAAACGAAA
5121357 TTACAAAT-TAAA
1 TTA-AAATATAAA
5121369 TTTTAAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
12 4 0.11
13 7 0.20
15 2 0.06
17 14 0.40
18 8 0.23
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.27
Consensus pattern (17 bp):
TTAAAATATAAACGAAA
Found at i:5121331 original size:30 final size:31
Alignment explanation
Indices: 5121295--5121386 Score: 145
Period size: 30 Copynumber: 3.1 Consensus size: 31
5121285 AAAAAATAAT
5121295 AATTAGAAA-TAAAATTTAAAATATAAACGA
1 AATTAGAAATTAAAATTTAAAATATAAACGA
5121325 AATTAGAAATTAAAA-TTAAAATATAAACGA
1 AATTAGAAATTAAAATTTAAAATATAAACGA
* *
5121355 AATTACAAATTAAATTTTAAAA-ATAAACGA
1 AATTAGAAATTAAAATTTAAAATATAAACGA
5121385 AA
1 AA
5121387 AATTAAAATT
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
30 47 0.81
31 11 0.19
ACGTcount: A:0.63, C:0.04, G:0.05, T:0.27
Consensus pattern (31 bp):
AATTAGAAATTAAAATTTAAAATATAAACGA
Found at i:5122607 original size:20 final size:20
Alignment explanation
Indices: 5122578--5122627 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
5122568 AAAATAATTT
* *
5122578 AAAATTTTTTGAAAAGCTAA
1 AAAATATTTTGAAAAGATAA
* *
5122598 TAAATATTTTGAAAATATAA
1 AAAATATTTTGAAAAGATAA
5122618 AAAATATTTT
1 AAAATATTTT
5122628 TTTTACAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (20 bp):
AAAATATTTTGAAAAGATAA
Found at i:5122821 original size:15 final size:16
Alignment explanation
Indices: 5122801--5122835 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
5122791 TGAAAAATTG
5122801 AAAAATAAT-TAGAAT
1 AAAAATAATATAGAAT
*
5122816 AAAAATAATATATAAT
1 AAAAATAATATAGAAT
5122832 AAAA
1 AAAA
5122836 TTTTAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
AAAAATAATATAGAAT
Found at i:5123729 original size:22 final size:23
Alignment explanation
Indices: 5123704--5123762 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 23
5123694 TGGTCAACGA
5123704 TGGAATTTGGGTGGT-GGTGACC
1 TGGAATTTGGGTGGTAGGTGACC
* * * *
5123726 TGGAATTTCGAT-TTAGGTGAGC
1 TGGAATTTGGGTGGTAGGTGACC
5123748 TGGAATTTGGGTGGT
1 TGGAATTTGGGTGGT
5123763 CCAATGCTAT
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.17, C:0.07, G:0.41, T:0.36
Consensus pattern (23 bp):
TGGAATTTGGGTGGTAGGTGACC
Found at i:5125632 original size:22 final size:21
Alignment explanation
Indices: 5125607--5125649 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
5125597 TATTTCTTTC
5125607 AATTCTGATTTCTTTTATTTTT
1 AATTCTG-TTTCTTTTATTTTT
*
5125629 AATTTTGTTTCTTTTATTTTT
1 AATTCTGTTTCTTTTATTTTT
5125650 CCTCAGATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.72
Consensus pattern (21 bp):
AATTCTGTTTCTTTTATTTTT
Found at i:5128243 original size:62 final size:61
Alignment explanation
Indices: 5128075--5128245 Score: 188
Period size: 62 Copynumber: 2.8 Consensus size: 61
5128065 ACACCAAATT
* * * * *
5128075 TTTTTTATCTGATAAAAAAATGCTAGTGTCGGTCAATGCATTGCCAACA-CAAAAAAATTTAT
1 TTTTTTATCAGAT-AAAAAA-GGTAGTGTCGGCCAATGCATGGCCAACACCAAAAAAATTTAA
* * *
5128137 TTTTTTATCTA-AT-AAAAAGGTGGTGTCGCCCAATGCATGACCAACACCAAAAAAATTTGAA
1 TTTTTTATC-AGATAAAAAAGGTAGTGTCGGCCAATGCATGGCCAACACCAAAAAAATTT-AA
*
5128198 TTTTTTATCAGATAAAAAAGGTAGTGACGGCCAA-GCAATGGCCAACAC
1 TTTTTTATCAGATAAAAAAGGTAGTGTCGGCCAATGC-ATGGCCAACAC
5128246 AAATTTTTTT
Statistics
Matches: 91, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
59 22 0.24
60 17 0.19
61 14 0.15
62 38 0.42
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.29
Consensus pattern (61 bp):
TTTTTTATCAGATAAAAAAGGTAGTGTCGGCCAATGCATGGCCAACACCAAAAAAATTTAA
Found at i:5145680 original size:29 final size:31
Alignment explanation
Indices: 5145645--5145709 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 31
5145635 TCACAATATT
5145645 AGAATTTAATCTCTATACTTTT-AT-TTTCA
1 AGAATTTAATCTCTATACTTTTCATATTTCA
* *
5145674 AGAATTTAATCTCTTTATTTTTCATATTTCA
1 AGAATTTAATCTCTATACTTTTCATATTTCA
5145705 A-AATT
1 AGAATT
5145710 CTGGTCAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 20 0.62
30 6 0.19
31 6 0.19
ACGTcount: A:0.32, C:0.12, G:0.03, T:0.52
Consensus pattern (31 bp):
AGAATTTAATCTCTATACTTTTCATATTTCA
Found at i:5146676 original size:14 final size:14
Alignment explanation
Indices: 5146652--5146691 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
5146642 AAATAATTTT
*
5146652 CAATATAAATTTAA
1 CAATTTAAATTTAA
*
5146666 TAATTTAAATTTAA
1 CAATTTAAATTTAA
*
5146680 CAATTAAAATTT
1 CAATTTAAATTT
5146692 TAATTTATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (14 bp):
CAATTTAAATTTAA
Found at i:5149557 original size:174 final size:174
Alignment explanation
Indices: 5149232--5149582 Score: 474
Period size: 174 Copynumber: 2.0 Consensus size: 174
5149222 AGTCGCTTTG
* *
5149232 GTTTCAATTCAGTCATTCAACTTTTGAAAAATAACAAAATAGTCATTAACGTTATAAAAAAGTGA
1 GTTTCAATTCAGTCATTCAACTTTTAAAAAATAACAAAATAGTCACTAACGTTATAAAAAAGTGA
* * * *
5149297 CAAATCAGTCACCCATTAACATTTTCCGTTATAGGCATAACGGGACAGGTGATGTGGTCAGTTAA
66 CAAATCAGTCACCCATTAACATTTTCCGTTATAGGCATAACGAGACAAGTGACGTGGTCAGTAAA
* * * *
5149362 TTAACTGACGTGGCTAATTAACTTGTCACATTGGACGAGGTAAA
131 TTAACTGACGCGGCCAATTAACTTGCCACATTAGACGAGGTAAA
**
5149406 GTTTCAATTCAGTCACTT-AACTTTTAAAAAATAAC-AAATCAGTCACTAACGTTATCGAAAAGT
1 GTTTCAATTCAGTCA-TTCAACTTTTAAAAAATAACAAAAT-AGTCACTAACGTTATAAAAAAGT
* * * *
5149469 GACAAATCATTCACTCATTAACATTTTTCGTTATAGGCCTAACGAGACAAGTGACGTGG-CTAGT
64 GACAAATCAGTCACCCATTAACATTTTCCGTTATAGGCATAACGAGACAAGTGACGTGGTC-AGT
* * * *
5149533 AAATTAGCTGATGCGGCCAATTAACTTGCCGCGTTAGACGAGGTAAA
128 AAATTAACTGACGCGGCCAATTAACTTGCCACATTAGACGAGGTAAA
5149580 GTT
1 GTT
5149583 GAGTGACTAT
Statistics
Matches: 154, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
173 5 0.03
174 147 0.95
175 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (174 bp):
GTTTCAATTCAGTCATTCAACTTTTAAAAAATAACAAAATAGTCACTAACGTTATAAAAAAGTGA
CAAATCAGTCACCCATTAACATTTTCCGTTATAGGCATAACGAGACAAGTGACGTGGTCAGTAAA
TTAACTGACGCGGCCAATTAACTTGCCACATTAGACGAGGTAAA
Found at i:5149642 original size:28 final size:28
Alignment explanation
Indices: 5149617--5149676 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
5149607 CTTTTTTTGT
*
5149617 TTTTTAATAAATGATCCAATATTTTTAC
1 TTTTTAATAAATGACCCAATATTTTTAC
**
5149645 TTTTTGGTAAATGACCCAATATATTTATAC
1 TTTTTAATAAATGACCCAATAT-TTT-TAC
5149675 TT
1 TT
5149677 CTTCTCCATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 19 0.70
29 3 0.11
30 5 0.19
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.48
Consensus pattern (28 bp):
TTTTTAATAAATGACCCAATATTTTTAC
Found at i:5150536 original size:30 final size:30
Alignment explanation
Indices: 5150485--5150542 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
5150475 GGTGTATGGC
5150485 TTTTTGAAAGTTAGTAGGATTGATTTGTTAT
1 TTTTTGAAAGTTAGTA-GATTGATTTGTTAT
*
5150516 TTTTTGAAAGTTAAGT-GATTGTTTTGT
1 TTTTTGAAAGTT-AGTAGATTGATTTGT
5150543 CATTGAGATC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 10 0.40
31 12 0.48
32 3 0.12
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.53
Consensus pattern (30 bp):
TTTTTGAAAGTTAGTAGATTGATTTGTTAT
Found at i:5161368 original size:13 final size:13
Alignment explanation
Indices: 5161350--5161376 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
5161340 ATATCATCGA
5161350 TAAGTTAATGAAT
1 TAAGTTAATGAAT
5161363 TAAGTTAATGAAT
1 TAAGTTAATGAAT
5161376 T
1 T
5161377 TTATTTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (13 bp):
TAAGTTAATGAAT
Found at i:5162379 original size:25 final size:25
Alignment explanation
Indices: 5162332--5162379 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
5162322 ATAAATAATT
*
5162332 AAAAATTAAAAGAAGAGATAAAATA
1 AAAAATTAAAAGAAGAGAAAAAATA
*
5162357 AAAAATTGAAAATAA-AGAAAAAA
1 AAAAATT-AAAAGAAGAGAAAAAA
5162380 ATGAAACCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (25 bp):
AAAAATTAAAAGAAGAGAAAAAATA
Found at i:5163458 original size:12 final size:12
Alignment explanation
Indices: 5163441--5163475 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
5163431 TTTTTCATCT
5163441 TATATATATTTA
1 TATATATATTTA
5163453 TATATATATTTA
1 TATATATATTTA
5163465 TATATATATTT
1 TATATATATTT
5163476 GTTTTAGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATATATATTTA
Found at i:5166818 original size:5 final size:5
Alignment explanation
Indices: 5166808--5166839 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
5166798 ATTGAAGTGA
5166808 TACAC TACAC TACAC TACAC TACAC TACAC TA
1 TACAC TACAC TACAC TACAC TACAC TACAC TA
5166840 ATGTTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.22
Consensus pattern (5 bp):
TACAC
Found at i:5175994 original size:14 final size:15
Alignment explanation
Indices: 5175975--5176007 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
5175965 ATAAACTAGT
5175975 AAATTATT-TTCTTA
1 AAATTATTATTCTTA
*
5175989 AAATTATTATTTTTA
1 AAATTATTATTCTTA
5176004 AAAT
1 AAAT
5176008 AAGTAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
AAATTATTATTCTTA
Found at i:5178679 original size:20 final size:20
Alignment explanation
Indices: 5178647--5178685 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
5178637 ATTTTATCAC
5178647 TTTATCTTTATATATAAAAG
1 TTTATCTTTATATATAAAAG
*
5178667 TTTAT-TTTAATATTTAAAA
1 TTTATCTTT-ATATATAAAA
5178686 AATAAATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (20 bp):
TTTATCTTTATATATAAAAG
Found at i:5183025 original size:18 final size:16
Alignment explanation
Indices: 5182993--5183036 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
5182983 ATGGAATGAG
5182993 AATAAATTTTTAATTA
1 AATAAATTTTTAATTA
5183009 AATAAA--TTTAATTA
1 AATAAATTTTTAATTA
*
5183023 ATTAAAATTTTTAA
1 AAT-AAATTTTTAA
5183037 ACCCTAAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 10 0.42
15 3 0.12
16 6 0.25
17 5 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AATAAATTTTTAATTA
Found at i:5183386 original size:18 final size:16
Alignment explanation
Indices: 5183363--5183398 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 16
5183353 GTTTAAAATT
5183363 TTTAATTAATTAAATTTA
1 TTTAATTAA--AAATTTA
5183381 TTTAATTAAAAATTTA
1 TTTAATTAAAAATTTA
5183397 TT
1 TT
5183399 CTCATTCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
18 9 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTAATTAAAAATTTA
Found at i:5187954 original size:87 final size:87
Alignment explanation
Indices: 5187853--5188027 Score: 341
Period size: 87 Copynumber: 2.0 Consensus size: 87
5187843 CACAAAGTGC
5187853 TCGTTTATGTTTCTTCTTTAACCACTGCCAAAGCAAACGAAGGATTAATTAAAAAACCAGCTGAA
1 TCGTTTATGTTTCTTCTTTAACCACTGCCAAAGCAAACGAAGGATTAATTAAAAAACCAGCTGAA
5187918 AAGCAACTTATATAGATAGGGG
66 AAGCAACTTATATAGATAGGGG
5187940 TCGTTTATGTTTCTTCTTTAACCACTGCCAAAGCAAACGAAGGATTAATTAAAAAACCAGCTGAA
1 TCGTTTATGTTTCTTCTTTAACCACTGCCAAAGCAAACGAAGGATTAATTAAAAAACCAGCTGAA
*
5188005 AATCAACTTATATAGATAGGGG
66 AAGCAACTTATATAGATAGGGG
5188027 T
1 T
5188028 GATACCTTTC
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (87 bp):
TCGTTTATGTTTCTTCTTTAACCACTGCCAAAGCAAACGAAGGATTAATTAAAAAACCAGCTGAA
AAGCAACTTATATAGATAGGGG
Found at i:5193054 original size:6 final size:6
Alignment explanation
Indices: 5193043--5193081 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
5193033 TGATCAAAAT
* * *
5193043 TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA
5193082 TATGAATTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (6 bp):
TGAAAG
Found at i:5243913 original size:21 final size:23
Alignment explanation
Indices: 5243889--5243943 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
5243879 TACTTGAAAC
5243889 ATATTAATTTTTC-TAAAAAA-T
1 ATATTAATTTTTCTTAAAAAATT
* *
5243910 ATATT-CTATTTCTTAAAAAATT
1 ATATTAATTTTTCTTAAAAAATT
5243932 ATATTTAATTTT
1 ATA-TTAATTTT
5243944 ATTAACTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 5 0.19
21 12 0.46
22 4 0.15
23 2 0.08
24 3 0.12
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (23 bp):
ATATTAATTTTTCTTAAAAAATT
Found at i:5243942 original size:22 final size:22
Alignment explanation
Indices: 5243892--5243942 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
5243882 TTGAAACATA
*
5243892 TTAATTTTTCTAAAAAATATAT
1 TTAATTTCTCTAAAAAATATAT
5243914 TCT-ATTTCT-TAAAAAATTATAT
1 T-TAATTTCTCTAAAAAA-TATAT
5243936 TTAATTT
1 TTAATTT
5243943 TATTAACTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
21 8 0.32
22 16 0.64
23 1 0.04
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAATTTCTCTAAAAAATATAT
Found at i:5245322 original size:60 final size:56
Alignment explanation
Indices: 5245255--5245369 Score: 176
Period size: 56 Copynumber: 2.0 Consensus size: 56
5245245 GAAGTAAAGG
*
5245255 AAAAGAAAAGAAATAAAAATATATTTTTTTAAGTTTATATGATGTGGTAAATTATTGAGT
1 AAAAGAAAAG-AATAAAAATATA-TTTTTTAAG-TT-TATGATGTGGTAAACTATTGAGT
*
5245315 AAAAGAAAAGAATTAAAATATATTTTTTAAGTTTATGATGTGGTAAACTATTGAG
1 AAAAGAAAAGAATAAAAATATATTTTTTAAGTTTATGATGTGGTAAACTATTGAG
5245370 GCACCAAAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
56 21 0.40
57 2 0.04
58 9 0.17
59 11 0.21
60 10 0.19
ACGTcount: A:0.46, C:0.01, G:0.16, T:0.37
Consensus pattern (56 bp):
AAAAGAAAAGAATAAAAATATATTTTTTAAGTTTATGATGTGGTAAACTATTGAGT
Found at i:5255367 original size:18 final size:18
Alignment explanation
Indices: 5255340--5255383 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
5255330 TTTGTTTAAT
5255340 AATA-TTTTTA-CCTCAAA
1 AATACTTTTTATCCT-AAA
*
5255357 AGTACTTTTTATCCTAAA
1 AATACTTTTTATCCTAAA
5255375 AATACTTTT
1 AATACTTTT
5255384 GAAAAACAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 3 0.13
18 17 0.74
19 3 0.13
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.45
Consensus pattern (18 bp):
AATACTTTTTATCCTAAA
Found at i:5258102 original size:28 final size:28
Alignment explanation
Indices: 5258042--5258115 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
5258032 TTAATATAAT
* *
5258042 ATTTAGTATTTAAATTTGATATTTTTTTA
1 ATTTAGTA-TTAAACTTGACATTTTTTTA
5258071 ATTTAGTACTTAAACTT-ACATTTTTTTA
1 ATTTAGTA-TTAAACTTGACATTTTTTTA
*
5258099 ATTTGGTATCTAAACTT
1 ATTTAGTAT-TAAACTT
5258116 TTTTTTAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.03
28 24 0.60
29 15 0.38
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (28 bp):
ATTTAGTATTAAACTTGACATTTTTTTA
Found at i:5274315 original size:5 final size:5
Alignment explanation
Indices: 5274300--5274329 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
5274290 AGTAGCGCTA
5274300 AAATT -AATT AAATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT AAATT AAATT AAATT A
5274330 TTTTTAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:5275522 original size:85 final size:85
Alignment explanation
Indices: 5275374--5275618 Score: 386
Period size: 85 Copynumber: 2.9 Consensus size: 85
5275364 CTTTTTCTAG
*
5275374 ATTTATTTTTATCAAATCTATCAAGTGTCTTGTGAATAGAATAGATATGAACTTTAAATTTAAGA
1 ATTTGTTTTTATCAAATCTATCAAGTGTCTTGTGAATAGAATAGATATGAACTTTAAATTTAAGA
5275439 GAATCAAATACATCTCCTAA
66 GAATCAAATACATCTCCTAA
* *
5275459 ATTTGTTTTTATCAAATCTATCACGCGTCTTGTGAATAGAATTA-ATATGAACTTTAAATTTAAG
1 ATTTGTTTTTATCAAATCTATCAAGTGTCTTGTGAATAGAA-TAGATATGAACTTTAAATTTAAG
* *
5275523 AGAATCAAATATATCTCCTAG
65 AGAATCAAATACATCTCCTAA
* * *
5275544 ATTTGTTTTTACCAAATCTATCATGTGTCTTGTGAATAGAATAGATATGAA-TCTTAGATTTAAG
1 ATTTGTTTTTATCAAATCTATCAAGTGTCTTGTGAATAGAATAGATATGAACT-TTAAATTTAAG
5275608 AGAATCAAATA
65 AGAATCAAATA
5275619 AATGTAATTG
Statistics
Matches: 148, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
84 3 0.02
85 143 0.97
86 2 0.01
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.38
Consensus pattern (85 bp):
ATTTGTTTTTATCAAATCTATCAAGTGTCTTGTGAATAGAATAGATATGAACTTTAAATTTAAGA
GAATCAAATACATCTCCTAA
Found at i:5281185 original size:258 final size:258
Alignment explanation
Indices: 5280727--5281494 Score: 1344
Period size: 258 Copynumber: 3.0 Consensus size: 258
5280717 AATAATAAAG
* * * *
5280727 TTTTCCTTGAGGTTAAACGTGCTGGAGTAGTTCAGTTGGTTAGAGCGTGTGGCTGTTAACCACAA
1 TTTTCCTTAAGTTTAAACGTGCTGGAATAGCTCAGTTGGTTAGAGCGTGTGGCTGTTAACCACAA
* *
5280792 AGTCGGAGGTTCAAGCCTTCCTTCTAGCGATTTTTCTAGA--CTTAAGCCTTTTTTACCTTGGGC
66 GGTCGGAGGTTCAAGCCCTCCTTCTAGCGATTTTTCTAGACTCTTAAGCCTTTTTTACCTTGGGC
5280855 CTTCATTGTTTATCTTTTATTTTTAATTTTATATTTCGGCCATCACGCTCCTTACTTTTCCCAGT
131 CTTCATTGTTTATCTTTTATTTTTAATTTTATATTTCGGCCATCACGCTCCTTACTTTTCCCAGT
5280920 TCCTTTGTTTTGCAGGTATGGCATTTCCTCGACCTCCAGGTTTTATCATCAAAGTAGAAACTT
196 TCCTTTGTTTTGCAGGTATGGCATTTCCTCGACCTCCAGGTTTTATCATCAAAGTAGAAACTT
5280983 TTTTCCTTAAGTTTAAACGTGCTGGAATAGCTCAGTTGGTTAGAGCGTGTGGCTGTTAACCACAA
1 TTTTCCTTAAGTTTAAACGTGCTGGAATAGCTCAGTTGGTTAGAGCGTGTGGCTGTTAACCACAA
* *
5281048 GGTCGGAGGTTCAAGCCCTCCTTCTAGCGTTTTTTCTAGACTCTTAAGCCTTTCTTACCTTGGGC
66 GGTCGGAGGTTCAAGCCCTCCTTCTAGCGATTTTTCTAGACTCTTAAGCCTTTTTTACCTTGGGC
5281113 CTTCATTGTTTATCTTTTATTTTTAATTTTATATTTCGGCCATCACGCTCCTTACTTTTCCCAGT
131 CTTCATTGTTTATCTTTTATTTTTAATTTTATATTTCGGCCATCACGCTCCTTACTTTTCCCAGT
5281178 TCCTTTGTTTTGCAGGTATGGCATTTCCTCGACCTCCAGGTTTTATCATCAAAGTAGAAACTT
196 TCCTTTGTTTTGCAGGTATGGCATTTCCTCGACCTCCAGGTTTTATCATCAAAGTAGAAACTT
* *** * * *
5281241 TTTTCCTTAAGTTTAAACGTGCTAGAATAGCTTTTTTGGTTAGAGCATGTGGCTGCTATCCACAA
1 TTTTCCTTAAGTTTAAACGTGCTGGAATAGCTCAGTTGGTTAGAGCGTGTGGCTGTTAACCACAA
*
5281306 GATCGGAGGTTCAAGCCCTCCTTCTAGCGATTTTTCTAGACTC-TAAGCCTTTTTTACCTTGGGC
66 GGTCGGAGGTTCAAGCCCTCCTTCTAGCGATTTTTCTAGACTCTTAAGCCTTTTTTACCTTGGGC
*
5281370 CTTCATTGTTTATCTTTTATTTTTAATTTTATATTTCGGCCATCGCGCTCCTTACTTTTCCCAGT
131 CTTCATTGTTTATCTTTTATTTTTAATTTTATATTTCGGCCATCACGCTCCTTACTTTTCCCAGT
* *
5281435 TCCTTTGTTTTGCAGGTATGGCATTTCCTCGACCTCCAGGTTTTACCATCAAAGCAGAAA
196 TCCTTTGTTTTGCAGGTATGGCATTTCCTCGACCTCCAGGTTTTATCATCAAAGTAGAAA
5281495 GGCAACGGTA
Statistics
Matches: 489, Mismatches: 21, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
256 98 0.20
257 142 0.29
258 249 0.51
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (258 bp):
TTTTCCTTAAGTTTAAACGTGCTGGAATAGCTCAGTTGGTTAGAGCGTGTGGCTGTTAACCACAA
GGTCGGAGGTTCAAGCCCTCCTTCTAGCGATTTTTCTAGACTCTTAAGCCTTTTTTACCTTGGGC
CTTCATTGTTTATCTTTTATTTTTAATTTTATATTTCGGCCATCACGCTCCTTACTTTTCCCAGT
TCCTTTGTTTTGCAGGTATGGCATTTCCTCGACCTCCAGGTTTTATCATCAAAGTAGAAACTT
Found at i:5291458 original size:28 final size:25
Alignment explanation
Indices: 5291404--5291451 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
5291394 TTGCATAATT
5291404 ATGTCATGATTCTATCACAACAATC
1 ATGTCATGATTCTATCACAACAATC
*
5291429 ATGT-ATGATTACTCTCACAACAA
1 ATGTCATGATT-CTATCACAACAA
5291452 CCTTCATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (25 bp):
ATGTCATGATTCTATCACAACAATC
Found at i:5293993 original size:607 final size:607
Alignment explanation
Indices: 5292841--5294057 Score: 2434
Period size: 607 Copynumber: 2.0 Consensus size: 607
5292831 TATATGAGTT
5292841 AATTCACTTATGATGTGGTTAGTTCTCTACTGGAATTTTGCTCTTCCGTTGCGGTGTGCTTAGAG
1 AATTCACTTATGATGTGGTTAGTTCTCTACTGGAATTTTGCTCTTCCGTTGCGGTGTGCTTAGAG
5292906 ATTAATCAAAAAATGAAACCGTATCATGTGAAACTAGGAATTGCTGTTCATACTGTTCTTTTACA
66 ATTAATCAAAAAATGAAACCGTATCATGTGAAACTAGGAATTGCTGTTCATACTGTTCTTTTACA
5292971 GTACATGTTTCTCATGCTATCAGTATATCATGATCATGAGCATGTCCTTTTAAAAGTACATGTTT
131 GTACATGTTTCTCATGCTATCAGTATATCATGATCATGAGCATGTCCTTTTAAAAGTACATGTTT
5293036 CTAATTCTAATCATGTATCCAGATCATCAACATGCCCGGGAATCCAAATGCAGTCGCAGAATGCA
196 CTAATTCTAATCATGTATCCAGATCATCAACATGCCCGGGAATCCAAATGCAGTCGCAGAATGCA
5293101 TGGAGGCATTGTTCCCTGCCCTTAAACATGCACTAAAGCAGGTAAAGGGTGACAAAAGAGAGAAA
261 TGGAGGCATTGTTCCCTGCCCTTAAACATGCACTAAAGCAGGTAAAGGGTGACAAAAGAGAGAAA
5293166 CATCCCCGGCACGTCCCTCATAAACATGCTACACCAGTGGATACTTGGGAGCGCAGCCATAAGTT
326 CATCCCCGGCACGTCCCTCATAAACATGCTACACCAGTGGATACTTGGGAGCGCAGCCATAAGTT
5293231 GGCCTCTGCTGGTAGTGTCGAACCCAGTTGTCCTTGTTCCCATTAATATGATCTTTTTGTTTAGA
391 GGCCTCTGCTGGTAGTGTCGAACCCAGTTGTCCTTGTTCCCATTAATATGATCTTTTTGTTTAGA
5293296 GGATAAGTAGAATCTTTAGCGATCTTTGAGAGCCATAACTTTTTTGTTATTATCCGACATATCAA
456 GGATAAGTAGAATCTTTAGCGATCTTTGAGAGCCATAACTTTTTTGTTATTATCCGACATATCAA
5293361 AATGTGAATAAAGATGTCAAAACTTGAGAACTCGAGCAAGCATTGGGAACGTGCAGATGATCAAT
521 AATGTGAATAAAGATGTCAAAACTTGAGAACTCGAGCAAGCATTGGGAACGTGCAGATGATCAAT
5293426 TCATTATCAATAATTTGATAGA
586 TCATTATCAATAATTTGATAGA
5293448 AATTCACTTATGATGTGGTTAGTTCTCTACTGGAATTTTGCTCTTCCGTTGCGGTGTGCTTAGAG
1 AATTCACTTATGATGTGGTTAGTTCTCTACTGGAATTTTGCTCTTCCGTTGCGGTGTGCTTAGAG
5293513 ATTAATCAAAAAATGAAACCGTATCATGTGAAACTAGGAATTGCTGTTCATACTGTTCTTTTACA
66 ATTAATCAAAAAATGAAACCGTATCATGTGAAACTAGGAATTGCTGTTCATACTGTTCTTTTACA
5293578 GTACATGTTTCTCATGCTATCAGTATATCATGATCATGAGCATGTCCTTTTAAAAGTACATGTTT
131 GTACATGTTTCTCATGCTATCAGTATATCATGATCATGAGCATGTCCTTTTAAAAGTACATGTTT
5293643 CTAATTCTAATCATGTATCCAGATCATCAACATGCCCGGGAATCCAAATGCAGTCGCAGAATGCA
196 CTAATTCTAATCATGTATCCAGATCATCAACATGCCCGGGAATCCAAATGCAGTCGCAGAATGCA
5293708 TGGAGGCATTGTTCCCTGCCCTTAAACATGCACTAAAGCAGGTAAAGGGTGACAAAAGAGAGAAA
261 TGGAGGCATTGTTCCCTGCCCTTAAACATGCACTAAAGCAGGTAAAGGGTGACAAAAGAGAGAAA
5293773 CATCCCCGGCACGTCCCTCATAAACATGCTACACCAGTGGATACTTGGGAGCGCAGCCATAAGTT
326 CATCCCCGGCACGTCCCTCATAAACATGCTACACCAGTGGATACTTGGGAGCGCAGCCATAAGTT
5293838 GGCCTCTGCTGGTAGTGTCGAACCCAGTTGTCCTTGTTCCCATTAATATGATCTTTTTGTTTAGA
391 GGCCTCTGCTGGTAGTGTCGAACCCAGTTGTCCTTGTTCCCATTAATATGATCTTTTTGTTTAGA
5293903 GGATAAGTAGAATCTTTAGCGATCTTTGAGAGCCATAACTTTTTTGTTATTATCCGACATATCAA
456 GGATAAGTAGAATCTTTAGCGATCTTTGAGAGCCATAACTTTTTTGTTATTATCCGACATATCAA
5293968 AATGTGAATAAAGATGTCAAAACTTGAGAACTCGAGCAAGCATTGGGAACGTGCAGATGATCAAT
521 AATGTGAATAAAGATGTCAAAACTTGAGAACTCGAGCAAGCATTGGGAACGTGCAGATGATCAAT
5294033 TCATTATCAATAATTTGATAGA
586 TCATTATCAATAATTTGATAGA
5294055 AAT
1 AAT
5294058 GAGAAAGAAA
Statistics
Matches: 610, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
607 610 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (607 bp):
AATTCACTTATGATGTGGTTAGTTCTCTACTGGAATTTTGCTCTTCCGTTGCGGTGTGCTTAGAG
ATTAATCAAAAAATGAAACCGTATCATGTGAAACTAGGAATTGCTGTTCATACTGTTCTTTTACA
GTACATGTTTCTCATGCTATCAGTATATCATGATCATGAGCATGTCCTTTTAAAAGTACATGTTT
CTAATTCTAATCATGTATCCAGATCATCAACATGCCCGGGAATCCAAATGCAGTCGCAGAATGCA
TGGAGGCATTGTTCCCTGCCCTTAAACATGCACTAAAGCAGGTAAAGGGTGACAAAAGAGAGAAA
CATCCCCGGCACGTCCCTCATAAACATGCTACACCAGTGGATACTTGGGAGCGCAGCCATAAGTT
GGCCTCTGCTGGTAGTGTCGAACCCAGTTGTCCTTGTTCCCATTAATATGATCTTTTTGTTTAGA
GGATAAGTAGAATCTTTAGCGATCTTTGAGAGCCATAACTTTTTTGTTATTATCCGACATATCAA
AATGTGAATAAAGATGTCAAAACTTGAGAACTCGAGCAAGCATTGGGAACGTGCAGATGATCAAT
TCATTATCAATAATTTGATAGA
Found at i:5295426 original size:269 final size:269
Alignment explanation
Indices: 5294942--5295486 Score: 1002
Period size: 269 Copynumber: 2.0 Consensus size: 269
5294932 CATCAATGGA
5294942 AAAGAAATCATAAAACATTTTATCAAAAGTAATCTACTAAACTGCTGGGAACAGTGACATTTTCC
1 AAAG-AATCATAAAACATTTTATCAAAAGTAATCTACTAAACTGCTGGGAACAGTGACATTTTCC
* *
5295007 TTGCTTTTTGTTCTTCGTGACCAATGTAAACCGAGGTATTTACCGGTCACTCCATTCATCGACGA
65 TTGCTTTTTGTTCTTAGTGACCAATGTAAACCGAGGTATTTACCGATCACTCCATTCATCGACGA
5295072 AATCCCATCACAAATCGTTGGATACCAGCAAAATCAGATACTATGTTCATATCGCGAAAGCTGCC
130 AATCCCATCACAAATCGTTGGATACCAGCAAAATCAGATACTATGTTCATATCGCGAAAGCTGCC
5295137 TGGCTTCTCATTCTCAATGTATTCCACAAGAAACTTGCACTGCTTTTCACCATTTGTCTGTTACA
195 TGGCTTCTCATTCTCAATGTATTCCACAAGAAACTTGCACTGCTTTTCACCATTTGTCTGTTACA
5295202 AGAGAATCAC
260 AGAGAATCAC
* *
5295212 AAAGAATCATAAATCATTTTATCAAAAGTGATCTACTAAACTGCTGGGAACAGTGACCA-TTTCC
1 AAAGAATCATAAAACATTTTATCAAAAGTAATCTACTAAACTGCTGGGAACAGTGA-CATTTTCC
* * *
5295276 TTGCTTTTTGTTCTTAGTGACCAATGTAAACCGAGGTATTTACCGATCATTCCATTCATTGACGG
65 TTGCTTTTTGTTCTTAGTGACCAATGTAAACCGAGGTATTTACCGATCACTCCATTCATCGACGA
5295341 AATCCCATCACAAATCGTTGGATACCAGCAAAATCAGATACTATGTTCATATCGCGAAAGCTGCC
130 AATCCCATCACAAATCGTTGGATACCAGCAAAATCAGATACTATGTTCATATCGCGAAAGCTGCC
5295406 TGGCTTCTCATTCTCAATGTATTCCACAAGAAACTTGCACTGCTTTTCACCATTTGTCTGTTACA
195 TGGCTTCTCATTCTCAATGTATTCCACAAGAAACTTGCACTGCTTTTCACCATTTGTCTGTTACA
5295471 AGAGAATCAC
260 AGAGAATCAC
5295481 AAAGAA
1 AAAGAA
5295487 CTCAAGTCAG
Statistics
Matches: 267, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
269 261 0.98
270 6 0.02
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (269 bp):
AAAGAATCATAAAACATTTTATCAAAAGTAATCTACTAAACTGCTGGGAACAGTGACATTTTCCT
TGCTTTTTGTTCTTAGTGACCAATGTAAACCGAGGTATTTACCGATCACTCCATTCATCGACGAA
ATCCCATCACAAATCGTTGGATACCAGCAAAATCAGATACTATGTTCATATCGCGAAAGCTGCCT
GGCTTCTCATTCTCAATGTATTCCACAAGAAACTTGCACTGCTTTTCACCATTTGTCTGTTACAA
GAGAATCAC
Found at i:5300328 original size:23 final size:23
Alignment explanation
Indices: 5300302--5300465 Score: 139
Period size: 23 Copynumber: 7.3 Consensus size: 23
5300292 ACACTAGCGC
5300302 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* *
5300325 GCTCTCTGTTTAGCAC-GTCTCGT
1 GCTCTCTGATTAGCACTGTGT-GT
*
5300348 GCTCTCTATTATTAGCACTGTGTGT
1 GCTCTC--TGATTAGCACTGTGTGT
* *
5300373 GCTTTCCGATTAGCACT-TCGTGT
1 GCTCTCTGATTAGCACTGT-GTGT
*
5300396 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* *
5300419 G--CTC-----AGTACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* *
5300435 GCTCTCTGTTTAGCACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
5300458 GCTCTCTG
1 GCTCTCTG
5300466 TTGCCCAGCA
Statistics
Matches: 116, Mismatches: 12, Indels: 26
0.75 0.08 0.17
Matches are distributed among these distances:
16 12 0.10
18 3 0.03
21 3 0.03
22 4 0.03
23 75 0.65
24 1 0.01
25 15 0.13
26 3 0.03
ACGTcount: A:0.12, C:0.24, G:0.23, T:0.42
Consensus pattern (23 bp):
GCTCTCTGATTAGCACTGTGTGT
Found at i:5300371 original size:48 final size:46
Alignment explanation
Indices: 5300302--5300422 Score: 145
Period size: 48 Copynumber: 2.6 Consensus size: 46
5300292 ACACTAGCGC
* * *
5300302 GCTCTCTGATTAGCACTGTGTGTGCTCTCTGTTTAGCACGTCTCGTGCT
1 GCTCTATGATTAGCACTGTGTGTGCTCTCCGATTAGCAC-T-TCGTG-T
* *
5300351 -CTCTATTATTAGCACTGTGTGTGCTTTCCGATTAGCACTTCGTGT
1 GCTCTATGATTAGCACTGTGTGTGCTCTCCGATTAGCACTTCGTGT
* *
5300396 GCTCTCTGATTAGCACTTTGTGTGCTC
1 GCTCTATGATTAGCACTGTGTGTGCTC
5300423 AGTACTTTGT
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
45 1 0.02
46 27 0.44
47 1 0.02
48 33 0.53
ACGTcount: A:0.12, C:0.25, G:0.22, T:0.40
Consensus pattern (46 bp):
GCTCTATGATTAGCACTGTGTGTGCTCTCCGATTAGCACTTCGTGT
Found at i:5300448 original size:39 final size:39
Alignment explanation
Indices: 5300387--5300461 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
5300377 TCCGATTAGC
5300387 ACTTCGTGTGCTCTCTGATTAGCACTTTGTGTGCTCAGT
1 ACTTCGTGTGCTCTCTGATTAGCACTTTGTGTGCTCAGT
* *
5300426 ACTTTGTGTGCTCTCTGTTTAGCACTTTGTGTGCTC
1 ACTTCGTGTGCTCTCTGATTAGCACTTTGTGTGCTC
5300462 TCTGTTGCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.44
Consensus pattern (39 bp):
ACTTCGTGTGCTCTCTGATTAGCACTTTGTGTGCTCAGT
Found at i:5300483 original size:25 final size:25
Alignment explanation
Indices: 5300446--5300517 Score: 126
Period size: 25 Copynumber: 2.8 Consensus size: 25
5300436 CTCTCTGTTT
*
5300446 AGCACTTTGTGTGCTCTCTGTTGCCC
1 AGCAC-TTATGTGCTCTCTGTTGCCC
5300472 AGCACTTATGTGCTCTCTGTTGCCC
1 AGCACTTATGTGCTCTCTGTTGCCC
5300497 AGCACTTATGTGCTCTCTGTT
1 AGCACTTATGTGCTCTCTGTT
5300518 CAGTACTTCG
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 40 0.89
26 5 0.11
ACGTcount: A:0.11, C:0.29, G:0.21, T:0.39
Consensus pattern (25 bp):
AGCACTTATGTGCTCTCTGTTGCCC
Found at i:5305278 original size:17 final size:18
Alignment explanation
Indices: 5305252--5305288 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
5305242 CAAAAAATTC
*
5305252 AATCATTAAATATAA-AA
1 AATCAATAAATATAATAA
5305269 AATCAATAAATATAATAA
1 AATCAATAAATATAATAA
5305287 AA
1 AA
5305289 AATCGAATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (18 bp):
AATCAATAAATATAATAA
Found at i:5305289 original size:21 final size:22
Alignment explanation
Indices: 5305238--5305290 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
5305228 TATCTGTTTG
* *
5305238 AATACAAAAAATTCAATCATTA
1 AATACAAAAAATTCAATAAATA
*
5305260 AATATAAAAAA-TCAATAAATA
1 AATACAAAAAATTCAATAAATA
5305281 TAATA-AAAAA
1 -AATACAAAAA
5305291 TCGAATCCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.48
22 14 0.52
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.25
Consensus pattern (22 bp):
AATACAAAAAATTCAATAAATA
Found at i:5326733 original size:17 final size:17
Alignment explanation
Indices: 5326672--5326735 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 17
5326662 TAGGGTTTAG
* *
5326672 AAGAAAAAGAGGAG-AA
1 AAGAAGAAGAGAAGAAA
*
5326688 AAGGAGAAGAAGAAGAAA
1 AAGAAGAAG-AGAAGAAA
* *
5326706 AAGAGGGAGAGAAGAAA
1 AAGAAGAAGAGAAGAAA
5326723 AAGAAGAAGAGAA
1 AAGAAGAAGAGAA
5326736 TATACAAATA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
16 7 0.18
17 23 0.61
18 8 0.21
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
AAGAAGAAGAGAAGAAA
Found at i:5326804 original size:17 final size:18
Alignment explanation
Indices: 5326766--5326804 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
5326756 AGAAGAGAAT
*
5326766 TTTTCTTTCCTTGACAAA
1 TTTTCTTTCCTTCACAAA
5326784 TTTTCTTTCCTTCAC-AA
1 TTTTCTTTCCTTCACAAA
5326801 TTTT
1 TTTT
5326805 AAAGAAGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.18, C:0.23, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTTCTTTCCTTCACAAA
Found at i:5339871 original size:18 final size:20
Alignment explanation
Indices: 5339848--5339889 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
5339838 TTTCATGCTA
5339848 TTTTTTAA-AATTTTA-AAT
1 TTTTTTAATAATTTTATAAT
*
5339866 TTTTTTAATATTTTTATAAT
1 TTTTTTAATAATTTTATAAT
5339886 TTTT
1 TTTT
5339890 AAATTATTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.38
19 6 0.29
20 7 0.33
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTTTAATAATTTTATAAT
Found at i:5340937 original size:38 final size:35
Alignment explanation
Indices: 5340894--5340973 Score: 99
Period size: 38 Copynumber: 2.2 Consensus size: 35
5340884 AAAAGGAGAA
5340894 TAATTTTTGTCACTACACTTC-TATTTAAACAAATGATT
1 TAATTTTTGTCACTACA-TTCTTATTT--A-AAATGATT
* *
5340932 TAATTTTTGTCATTATATTCTTATTTAAAATGATT
1 TAATTTTTGTCACTACATTCTTATTTAAAATGATT
5340967 TAATTTT
1 TAATTTT
5340974 ACATTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
35 15 0.38
36 1 0.03
37 3 0.08
38 20 0.51
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.53
Consensus pattern (35 bp):
TAATTTTTGTCACTACATTCTTATTTAAAATGATT
Found at i:5343193 original size:16 final size:17
Alignment explanation
Indices: 5343161--5343204 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
5343151 CCACAAAGGC
5343161 AAATAAAAACTAGAAAA
1 AAATAAAAACTAGAAAA
5343178 AAATAAAATA-TA-AAAA
1 AAATAAAA-ACTAGAAAA
*
5343194 AAATAAGAACT
1 AAATAAAAACT
5343205 GAATATAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 1 0.04
16 12 0.50
17 10 0.42
18 1 0.04
ACGTcount: A:0.75, C:0.05, G:0.05, T:0.16
Consensus pattern (17 bp):
AAATAAAAACTAGAAAA
Found at i:5345007 original size:6 final size:6
Alignment explanation
Indices: 5344996--5345021 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
5344986 TAAAAATTAG
5344996 AAGTGA AAGTGA AAGTGA AAGTGA AA
1 AAGTGA AAGTGA AAGTGA AAGTGA AA
5345022 TTGGAATTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.31, T:0.15
Consensus pattern (6 bp):
AAGTGA
Found at i:5346498 original size:29 final size:30
Alignment explanation
Indices: 5346451--5346508 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
5346441 TCGATTTAAT
* * *
5346451 GTGTAATTGTATACATG-AACTTTAATTTG
1 GTGTAATTATACACATGAAACTCTAATTTG
*
5346480 GTGTAATTATACACGTGAAACTCTAATTT
1 GTGTAATTATACACATGAAACTCTAATTT
5346509 TGATTCAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (30 bp):
GTGTAATTATACACATGAAACTCTAATTTG
Found at i:5346706 original size:30 final size:29
Alignment explanation
Indices: 5346670--5346735 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
5346660 ATAATTTACA
5346670 AAAATTGAATCA-AATCAAAATTTCATGCAT
1 AAAATTGAA-CACAATCAAAATTT-ATGCAT
* *
5346700 AAAATTGCACACAATCAAAATTTATGTAT
1 AAAATTGAACACAATCAAAATTTATGCAT
*
5346729 ATAATTG
1 AAAATTG
5346736 CACATTAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 13 0.41
30 19 0.59
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (29 bp):
AAAATTGAACACAATCAAAATTTATGCAT
Found at i:5348798 original size:17 final size:17
Alignment explanation
Indices: 5348776--5348814 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
5348766 TTAATGTTTA
5348776 TATTTTTT--ATTAATT
1 TATTTTTTGAATTAATT
5348791 TATTTTTTGAATTAATT
1 TATTTTTTGAATTAATT
5348808 T-TTTTTT
1 TATTTTTT
5348815 AAAAACATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.36
16 6 0.27
17 8 0.36
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
TATTTTTTGAATTAATT
Found at i:5351043 original size:16 final size:17
Alignment explanation
Indices: 5351022--5351063 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
5351012 CTACTATTTT
5351022 ACAGTTTTC-TG-TTATA
1 ACAGTTTTCATGCTT-TA
5351038 ACAGTTTCTCATGCTTTA
1 ACAGTTT-TCATGCTTTA
5351056 ACAGTTTT
1 ACAGTTTT
5351064 GTCTTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 7 0.30
17 3 0.13
18 11 0.48
19 2 0.09
ACGTcount: A:0.24, C:0.17, G:0.12, T:0.48
Consensus pattern (17 bp):
ACAGTTTTCATGCTTTA
Found at i:5355689 original size:21 final size:21
Alignment explanation
Indices: 5355663--5355705 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
5355653 TAGAGCATAG
5355663 CACACTCGTTGCTCTAATAAC
1 CACACTCGTTGCTCTAATAAC
5355684 CACACTCGTTGCTCTAATAAC
1 CACACTCGTTGCTCTAATAAC
5355705 C
1 C
5355706 TTCATGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.35, G:0.09, T:0.28
Consensus pattern (21 bp):
CACACTCGTTGCTCTAATAAC
Found at i:5364682 original size:3 final size:3
Alignment explanation
Indices: 5364674--5364698 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
5364664 TCTCGAGGTC
5364674 CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT C
5364699 GGCAGCATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:5380375 original size:18 final size:17
Alignment explanation
Indices: 5380343--5380376 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
5380333 ATTCTTGGAT
5380343 AATATATAAATTATATA
1 AATATATAAATTATATA
*
5380360 AATATGATATATTATAT
1 AATAT-ATAAATTATAT
5380377 TGGGTTATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
AATATATAAATTATATA
Found at i:5381171 original size:18 final size:19
Alignment explanation
Indices: 5381133--5381171 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
5381123 CCTAACGAAA
*
5381133 GGTTATTAATTAAGGAGTT
1 GGTTATTAATTAAAGAGTT
*
5381152 GGTTATTAA-TAAATAGTT
1 GGTTATTAATTAAAGAGTT
5381170 GG
1 GG
5381172 AAATGATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (19 bp):
GGTTATTAATTAAAGAGTT
Found at i:5382228 original size:22 final size:23
Alignment explanation
Indices: 5382178--5382228 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 23
5382168 GTCCATCAAC
*
5382178 AATAAGATTAAATCTATGAACAGT
1 AATAA-ATTAAATCTATAAACAGT
*
5382202 -A-AAATTTAATC-ATAAACAGT
1 AATAAATTAAATCTATAAACAGT
5382222 AATAAAT
1 AATAAAT
5382229 ATATAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
20 8 0.35
21 8 0.35
22 6 0.26
23 1 0.04
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.29
Consensus pattern (23 bp):
AATAAATTAAATCTATAAACAGT
Found at i:5399437 original size:50 final size:49
Alignment explanation
Indices: 5399379--5399546 Score: 230
Period size: 50 Copynumber: 3.4 Consensus size: 49
5399369 CCCTCTATTG
5399379 CTTTAGGGGTATAAGATTTGCTTTTGTATCTTCAATCTGTCCATCTGTAA
1 CTTTAGGGGTATAAGATTTGCTTTTGTATCTTCAATCTG-CCATCTGTAA
* *
5399429 CTTTAGGGGTATAAGATTTGCTTTTGTAGCTTTAATCTGCCATTCTGTAA
1 CTTTAGGGGTATAAGATTTGCTTTTGTATCTTCAATCTGCCA-TCTGTAA
* * * *
5399479 CTTTAGGGGTATAAGATTTACTTTTGTAGT-TTCAATTTGCCTTTTTGTAA
1 CTTTAGGGGTATAAGATTTGCTTTTGTA-TCTTCAATCTGCC-ATCTGTAA
*
5399529 CTTTAGGGGTAAAAGATT
1 CTTTAGGGGTATAAGATT
5399547 GGATTGTTTC
Statistics
Matches: 106, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
49 3 0.03
50 103 0.97
ACGTcount: A:0.23, C:0.12, G:0.20, T:0.45
Consensus pattern (49 bp):
CTTTAGGGGTATAAGATTTGCTTTTGTATCTTCAATCTGCCATCTGTAA
Found at i:5399616 original size:39 final size:39
Alignment explanation
Indices: 5399573--5399786 Score: 184
Period size: 39 Copynumber: 5.4 Consensus size: 39
5399563 TCTCATGGTT
5399573 GGGGTAAAAGATTGGATTTCTTCAATCTGCTCC-ATAATC
1 GGGGTAAAAGATTGGATTTCTTCAATCTGC-CCTATAATC
* * * * * *
5399612 GGGGTAAAAGA-TCGATGGTCTTTAATCTTGCCCTTTAGTT
1 GGGGTAAAAGATTGGAT-TTCTTCAATC-TGCCCTATAATC
* * * *
5399652 AGGGTAAAAGATTGGATTTTTTTAATCTGCCCTATGATC
1 GGGGTAAAAGATTGGATTTCTTCAATCTGCCCTATAATC
* * * * *
5399691 GGGGTAAAAGATCGGATGGTT-TTTAATCTTGCCCTTTAGTT
1 GGGGTAAAAGATTGGAT--TTCTTCAATC-TGCCCTATAATC
* *
5399732 AGGGTAAAAGATTGGATTTCTTCAATCTGTCCC-ATTATC
1 GGGGTAAAAGATTGGATTTCTTCAATCTG-CCCTATAATC
5399771 GGGGTAAAAGATTGGA
1 GGGGTAAAAGATTGGA
5399787 GGTTGTTACT
Statistics
Matches: 138, Mismatches: 28, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
38 4 0.03
39 65 0.47
40 40 0.29
41 29 0.21
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.36
Consensus pattern (39 bp):
GGGGTAAAAGATTGGATTTCTTCAATCTGCCCTATAATC
Found at i:5399737 original size:41 final size:41
Alignment explanation
Indices: 5399613--5399748 Score: 172
Period size: 40 Copynumber: 3.4 Consensus size: 41
5399603 TCCATAATCG
*
5399613 GGGTAAAAGATC-GATGGTCTTTAATCTTGCCCTTTAGTTA
1 GGGTAAAAGATCGGATGGTTTTTAATCTTGCCCTTTAGTTA
* * * **
5399653 GGGTAAAAGATTGGAT-TTTTTTAATC-TGCCCTAT-GATCG
1 GGGTAAAAGATCGGATGGTTTTTAATCTTGCCCTTTAG-TTA
5399692 GGGTAAAAGATCGGATGGTTTTTAATCTTGCCCTTTAGTTA
1 GGGTAAAAGATCGGATGGTTTTTAATCTTGCCCTTTAGTTA
*
5399733 GGGTAAAAGATTGGAT
1 GGGTAAAAGATCGGAT
5399749 TTCTTCAATC
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
38 1 0.01
39 23 0.29
40 28 0.35
41 26 0.33
42 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.37
Consensus pattern (41 bp):
GGGTAAAAGATCGGATGGTTTTTAATCTTGCCCTTTAGTTA
Found at i:5399747 original size:80 final size:79
Alignment explanation
Indices: 5399574--5399790 Score: 339
Period size: 80 Copynumber: 2.7 Consensus size: 79
5399564 CTCATGGTTG
*
5399574 GGGTAAAAGATTGGATTTCTTCAATCTGCTCCATAATCGGGGTAAAAGATC-GATGGTCTTTAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGC-CCATAATCGGGGTAAAAGATCGGATGGTTTTTAAT
5399638 CTTGCCCTTTAGTTA
65 CTTGCCCTTTAGTTA
* * *
5399653 GGGTAAAAGATTGGATTTTTTTAATCTGCCCTATGATCGGGGTAAAAGATCGGATGGTTTTTAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCC-ATAATCGGGGTAAAAGATCGGATGGTTTTTAAT
5399718 CTTGCCCTTTAGTTA
65 CTTGCCCTTTAGTTA
* *
5399733 GGGTAAAAGATTGGATTTCTTCAATCTGTCCCATTATCGGGGTAAAAGATTGGA-GGTT
1 GGGTAAAAGATTGGATTTCTTCAATCTG-CCCATAATCGGGGTAAAAGATCGGATGGTT
5399791 GTTACTTTAG
Statistics
Matches: 127, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
78 2 0.02
79 49 0.39
80 73 0.57
81 3 0.02
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (79 bp):
GGGTAAAAGATTGGATTTCTTCAATCTGCCCATAATCGGGGTAAAAGATCGGATGGTTTTTAATC
TTGCCCTTTAGTTA
Found at i:5399905 original size:50 final size:50
Alignment explanation
Indices: 5399824--5399968 Score: 164
Period size: 51 Copynumber: 2.9 Consensus size: 50
5399814 CAGGAGTATA
* * * *
5399824 AGATTCGTCATTGTGACTTCAATCTGTCCCTCTACAGCTTTAGGTGAATG
1 AGATTTGTCATTGCGGCTTCAATCTGCCCCTCTACAGCTTTAGGTGAATG
* * *
5399874 GGATTTGTCATTGCGGCTTCATTCTGCCCCTCTACAGCTTTTAGGTGTATG
1 AGATTTGTCATTGCGGCTTCAATCTGCCCCTCTACAGC-TTTAGGTGAATG
* * * * * *
5399925 AGATTTGCCTTTGCGGTTTCAATCTGCACCTTTATAGCTTTAGG
1 AGATTTGTCATTGCGGCTTCAATCTGCCCCTCTACAGCTTTAGG
5399969 GGTAAAAGAT
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 38 0.48
51 41 0.52
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.39
Consensus pattern (50 bp):
AGATTTGTCATTGCGGCTTCAATCTGCCCCTCTACAGCTTTAGGTGAATG
Found at i:5404344 original size:47 final size:47
Alignment explanation
Indices: 5404293--5404386 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
5404283 CAACTCTTAG
5404293 GGATTTTTCATTTTGTCACCCAAAATGAAATAGTTGCAATTTTATCA
1 GGATTTTTCATTTTGTCACCCAAAATGAAATAGTTGCAATTTTATCA
5404340 GGATTTTTCATTTTGTCACCCAAAATGAAATAGTTGCAATTTTATCA
1 GGATTTTTCATTTTGTCACCCAAAATGAAATAGTTGCAATTTTATCA
5404387 CTCAATTTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (47 bp):
GGATTTTTCATTTTGTCACCCAAAATGAAATAGTTGCAATTTTATCA
Found at i:5410240 original size:26 final size:26
Alignment explanation
Indices: 5410211--5410262 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5410201 CATTAAGACC
5410211 CAGTGGTATTTATATATTAGTAAGTT
1 CAGTGGTATTTATATATTAGTAAGTT
*
5410237 CAGTGGTATTTATATGTTAGTAAGTT
1 CAGTGGTATTTATATATTAGTAAGTT
5410263 ATAGCGTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.21, T:0.46
Consensus pattern (26 bp):
CAGTGGTATTTATATATTAGTAAGTT
Found at i:5420373 original size:10 final size:11
Alignment explanation
Indices: 5420357--5420384 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
5420347 TTTTTTTGAC
5420357 TATTTTTAATT
1 TATTTTTAATT
5420368 TATTTTTAATT
1 TATTTTTAATT
5420379 TATTTT
1 TATTTT
5420385 GTTTTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (11 bp):
TATTTTTAATT
Found at i:5420690 original size:27 final size:25
Alignment explanation
Indices: 5420658--5420718 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
5420648 TTTTTGTTGT
5420658 TTTTAATTTAATT-TAAAGTTATTTTG
1 TTTTAATTTAATTATAAA-TTA-TTTG
5420684 TTATTAA-TT-ATTATAAATTATTTG
1 TT-TTAATTTAATTATAAATTATTTG
5420708 -TTTAATTTAAT
1 TTTTAATTTAAT
5420719 GTTGGTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
22 4 0.13
23 3 0.10
24 6 0.19
25 6 0.19
26 8 0.26
27 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (25 bp):
TTTTAATTTAATTATAAATTATTTG
Found at i:5420854 original size:152 final size:150
Alignment explanation
Indices: 5420452--5420873 Score: 611
Period size: 148 Copynumber: 2.8 Consensus size: 150
5420442 TATAAATTTT
** * * * *
5420452 TTTGTTTAGTAGAGTAGATTAAAGAAAAAAAAACTAAAAGAGAGGT-AATTTTTT-TTGTTTTTA
1 TTTGTTTAGTAGAGTAGATTAAAGGGAAGAAAGCTAAAAGAAAAGTAAATTTTTTGTTGTTTTTA
*
5420515 ATTTAATTTAAAGTTATATTGTTAATAATTATTATAAATTATTTGTTTAGTTTAATGTTGGTTTA
66 ATTTAATTTAAAGTTATTTTGTTAATAATTATTATAAATTATTTGTTTAGTTTAATGTTGGTTTA
*
5420580 TGTGATTTTTTATAAAAAAT
131 TGTGATTTTTTATAAAAAAA
* * * * * *
5420600 TTTGTTTGGTATAATATATTAAAGGGAAGAAAGC--CAA-AAAAGGAAATTTTTTTGTTGTTTTT
1 TTTGTTTAGTAGAGTAGATTAAAGGGAAGAAAGCTAAAAGAAAAGTAAA-TTTTTTGTTGTTTTT
* *
5420662 AATTTAATTTAAAGTTATTTTGTTATTAATTATTATAAATTATTTGTTTAATTTAATGTTGGTTT
65 AATTTAATTTAAAGTTATTTTGTTAATAATTATTATAAATTATTTGTTTAGTTTAATGTTGGTTT
5420727 ATGTGATTTTTTATTAAAAAAA
130 ATGTGATTTTTTA-TAAAAAAA
* *
5420749 TTTGTTTAGTAGAGTAGATTAAAGGGAAGAAAGCTAAAAGAAAATTAAATTGTTTTGTAGTTTTT
1 TTTGTTTAGTAGAGTAGATTAAAGGGAAGAAAGCTAAAAGAAAAGTAAATT-TTTTGTTGTTTTT
*
5420814 AATTTAATTTAAAGTTATTTTGTTAGTAATTATTATAAATTATTTGTTTAGTTTAATGTT
65 AATTTAATTTAAAGTTATTTTGTTAATAATTATTATAAATTATTTGTTTAGTTTAATGTT
5420874 TATGTAATTT
Statistics
Matches: 240, Mismatches: 26, Indels: 12
0.86 0.09 0.04
Matches are distributed among these distances:
145 3 0.01
146 4 0.02
147 6 0.03
148 109 0.45
149 37 0.15
151 4 0.02
152 77 0.32
ACGTcount: A:0.36, C:0.01, G:0.14, T:0.48
Consensus pattern (150 bp):
TTTGTTTAGTAGAGTAGATTAAAGGGAAGAAAGCTAAAAGAAAAGTAAATTTTTTGTTGTTTTTA
ATTTAATTTAAAGTTATTTTGTTAATAATTATTATAAATTATTTGTTTAGTTTAATGTTGGTTTA
TGTGATTTTTTATAAAAAAA
Found at i:5420940 original size:16 final size:15
Alignment explanation
Indices: 5420914--5420956 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
5420904 TGTTCTTTGT
5420914 TTTTAAATTATTTTA
1 TTTTAAATTATTTTA
*
5420929 TTTTAAAGTTATTTTG
1 TTTTAAA-TTATTTTA
*
5420945 TTTTTAATTATT
1 TTTTAAATTATT
5420957 ATAATTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (15 bp):
TTTTAAATTATTTTA
Found at i:5420965 original size:40 final size:40
Alignment explanation
Indices: 5420919--5421028 Score: 101
Period size: 37 Copynumber: 2.9 Consensus size: 40
5420909 TTTGTTTTTA
5420919 AATTATTTTATTTTAAAGTTATTTTGTTTTTAATTATTAT
1 AATTATTTTATTTTAAAGTTATTTTGTTTTTAATTATTAT
* * * * *
5420959 AATTATTATAAATTATAAA--T-TCTTG-TTTT-GTTGTTAT
1 AATTATT-T-TATTTTAAAGTTATTTTGTTTTTAATTATTAT
5420996 --TTA-TTTATTTTAAAGTTATTTTGTTTTTAATTA
1 AATTATTTTATTTTAAAGTTATTTTGTTTTTAATTA
5421029 AATTTGTTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 17
0.66 0.12 0.21
Matches are distributed among these distances:
32 7 0.13
33 1 0.02
34 2 0.04
35 7 0.13
36 4 0.08
37 8 0.15
38 4 0.08
39 4 0.08
40 8 0.15
41 1 0.02
42 7 0.13
ACGTcount: A:0.30, C:0.01, G:0.06, T:0.63
Consensus pattern (40 bp):
AATTATTTTATTTTAAAGTTATTTTGTTTTTAATTATTAT
Found at i:5422410 original size:26 final size:28
Alignment explanation
Indices: 5422381--5422450 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 28
5422371 TTGAAAACAA
5422381 TACTAATTTCTTGTTGTCT-T-GTTCTC
1 TACTAATTTCTTGTTGTCTATAGTTCTC
* * *
5422407 TACTGATTTCTT-TTTTTTAGTAAGTTCTC
1 TACTAATTTCTTGTTGTCTA-T-AGTTCTC
5422436 TACTAATTTCTTGTT
1 TACTAATTTCTTGTT
5422451 CTGTTCTCCC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
25 4 0.11
26 11 0.31
27 1 0.03
29 17 0.49
30 2 0.06
ACGTcount: A:0.16, C:0.16, G:0.10, T:0.59
Consensus pattern (28 bp):
TACTAATTTCTTGTTGTCTATAGTTCTC
Found at i:5426569 original size:21 final size:21
Alignment explanation
Indices: 5426544--5426613 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
5426534 GAATTGCACA
5426544 TCTCTTAAGCTATGACATACC
1 TCTCTTAAGCTATGACATACC
* *
5426565 TCTC-TAA-CTCTTCGA-ATTGCACA
1 TCTCTTAAGCT-AT-GACA-T--ACC
5426588 TCTCTTAAGCTATGACATACC
1 TCTCTTAAGCTATGACATACC
5426609 TCTCT
1 TCTCT
5426614 AACTCTTCCT
Statistics
Matches: 37, Mismatches: 4, Indels: 16
0.65 0.07 0.28
Matches are distributed among these distances:
19 2 0.05
20 5 0.14
21 14 0.38
23 9 0.24
24 5 0.14
25 2 0.05
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.36
Consensus pattern (21 bp):
TCTCTTAAGCTATGACATACC
Found at i:5426577 original size:44 final size:44
Alignment explanation
Indices: 5426529--5426621 Score: 186
Period size: 44 Copynumber: 2.1 Consensus size: 44
5426519 CATAACTGTT
5426529 TCTTCGAATTGCACATCTCTTAAGCTATGACATACCTCTCTAAC
1 TCTTCGAATTGCACATCTCTTAAGCTATGACATACCTCTCTAAC
5426573 TCTTCGAATTGCACATCTCTTAAGCTATGACATACCTCTCTAAC
1 TCTTCGAATTGCACATCTCTTAAGCTATGACATACCTCTCTAAC
5426617 TCTTC
1 TCTTC
5426622 CTTCTCATCG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.35
Consensus pattern (44 bp):
TCTTCGAATTGCACATCTCTTAAGCTATGACATACCTCTCTAAC
Found at i:5428302 original size:209 final size:209
Alignment explanation
Indices: 5427939--5428743 Score: 1481
Period size: 209 Copynumber: 3.9 Consensus size: 209
5427929 TGTAAGAAGT
* *
5427939 TTTTTATAAACACTTCAGAGGATTGGTTCTTTCAGCATTTACCAATTCATCCTGGGTTGAAGCAT
1 TTTTTATAAACACTTTAGAGGATTGGTTCTTTCAGCATTTACCAATTCATCCTGGCTTGAAGCAT
5428004 TGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
66 TGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
*
5428069 TTACTGAATGCAGTCCTTTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCAGGCTCAAAGC
131 TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCAGGCTCAAAGC
5428134 ACTGGTGCATTGAC
196 ACTGGTGCATTGAC
*
5428148 TTTTTATAAACACTTTACAGGATTGGTTCTTTCAGCATTTACCAATTCATCCTGGCTTGAAGCAT
1 TTTTTATAAACACTTTAGAGGATTGGTTCTTTCAGCATTTACCAATTCATCCTGGCTTGAAGCAT
5428213 TGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
66 TGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
*
5428278 TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCACGCTCAAAGC
131 TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCAGGCTCAAAGC
5428343 ACTGGTGCATTGAC
196 ACTGGTGCATTGAC
* *
5428357 TTTTTATAAACACTTTAGAGAATTGGTTCTTTCAGAATTTACCAATTCATCCTGGCTTGAAGCAT
1 TTTTTATAAACACTTTAGAGGATTGGTTCTTTCAGCATTTACCAATTCATCCTGGCTTGAAGCAT
*
5428422 TGACTTTTTGGTAGGAAAGAGTC-GCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
66 TGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
*
5428486 TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCAGGATCAAAGC
131 TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCAGGCTCAAAGC
5428551 ACTGGTGCATTGAC
196 ACTGGTGCATTGAC
* *
5428565 TTTTTATAAACACTTTAGA-TA-AGGTTCTTTCAGCATTTACCAATTCATCCTGGCTTGAAGCAT
1 TTTTTATAAACACTTTAGAGGATTGGTTCTTTCAGCATTTACCAATTCATCCTGGCTTGAAGCAT
*
5428628 TGACTTTTTGGTAGAAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
66 TGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
5428693 TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGC
131 TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGC
5428744 TGGTTGCATG
Statistics
Matches: 579, Mismatches: 16, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
206 61 0.11
207 93 0.16
208 137 0.24
209 288 0.50
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (209 bp):
TTTTTATAAACACTTTAGAGGATTGGTTCTTTCAGCATTTACCAATTCATCCTGGCTTGAAGCAT
TGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCAGGCTCAAAGC
ACTGGTGCATTGAC
Found at i:5428722 original size:415 final size:417
Alignment explanation
Indices: 5427939--5428743 Score: 1490
Period size: 415 Copynumber: 1.9 Consensus size: 417
5427929 TGTAAGAAGT
* * *
5427939 TTTTTATAAACACTTCAGAGGATTGGTTCTTTCAGCATTTACCAATTCATCCTGGGTTGAAGCAT
1 TTTTTATAAACACTTCAGAGAATTGGTTCTTTCAGAATTTACCAATTCATCCTGGCTTGAAGCAT
5428004 TGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
66 TGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
* *
5428069 TTACTGAATGCAGTCCTTTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCAGGCTCAAAGC
131 TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCAGGATCAAAGC
*
5428134 ACTGGTGCATTGACTTTTTATAAACACTTTACAGGATTGGTTCTTTCAGCATTTACCAATTCATC
196 ACTGGTGCATTGACTTTTTATAAACACTTTA-AGGATAGGTTCTTTCAGCATTTACCAATTCATC
*
5428199 CTGGCTTGAAGCATTGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAG
260 CTGGCTTGAAGCATTGACTTTTTGGTAGAAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAG
5428264 ATTTAAACTAGACCTTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGC
325 ATTTAAACTAGACCTTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGC
5428329 ACCACGCTCAAAGCACTGGTGCATTGAC
390 ACCACGCTCAAAGCACTGGTGCATTGAC
*
5428357 TTTTTATAAACACTTTAGAGAATTGGTTCTTTCAGAATTTACCAATTCATCCTGGCTTGAAGCAT
1 TTTTTATAAACACTTCAGAGAATTGGTTCTTTCAGAATTTACCAATTCATCCTGGCTTGAAGCAT
*
5428422 TGACTTTTTGGTAGGAAAGAGTC-GCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
66 TGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
5428486 TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCAGGATCAAAGC
131 TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCAGGATCAAAGC
5428551 ACTGGTGCATTGACTTTTTATAAACACTTT-A-GATAAGGTTCTTTCAGCATTTACCAATTCATC
196 ACTGGTGCATTGACTTTTTATAAACACTTTAAGGAT-AGGTTCTTTCAGCATTTACCAATTCATC
5428614 CTGGCTTGAAGCATTGACTTTTTGGTAGAAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAG
260 CTGGCTTGAAGCATTGACTTTTTGGTAGAAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAG
5428679 ATTTAAACTAGACCTTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGC
325 ATTTAAACTAGACCTTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGC
5428744 TGGTTGCATG
Statistics
Matches: 377, Mismatches: 9, Indels: 5
0.96 0.02 0.01
Matches are distributed among these distances:
414 3 0.01
415 157 0.42
417 134 0.36
418 83 0.22
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (417 bp):
TTTTTATAAACACTTCAGAGAATTGGTTCTTTCAGAATTTACCAATTCATCCTGGCTTGAAGCAT
TGACTTTTTGGTAGGAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGATTTAAACTAGACC
TTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGCACCAGGATCAAAGC
ACTGGTGCATTGACTTTTTATAAACACTTTAAGGATAGGTTCTTTCAGCATTTACCAATTCATCC
TGGCTTGAAGCATTGACTTTTTGGTAGAAAAGAGACTGCAGCTTGAAAATAAGTAAATGCTAAGA
TTTAAACTAGACCTTACTGAATGCAGTCCTCTTAAGATGGTTGCATGAACCAATTAAGTTAAGCA
CCACGCTCAAAGCACTGGTGCATTGAC
Found at i:5444317 original size:6 final size:6
Alignment explanation
Indices: 5444306--5444332 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
5444296 AGTAGTTCAA
5444306 CCCAAT CCCAAT CCCAAT CCCAAT CCC
1 CCCAAT CCCAAT CCCAAT CCCAAT CCC
5444333 CCCTCCTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.56, G:0.00, T:0.15
Consensus pattern (6 bp):
CCCAAT
Found at i:5444494 original size:11 final size:11
Alignment explanation
Indices: 5444477--5444506 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
5444467 AAGTTTGACT
5444477 TTGTTGATTGA
1 TTGTTGATTGA
*
5444488 TTTTTGATTGA
1 TTGTTGATTGA
5444499 TTGTTGAT
1 TTGTTGAT
5444507 AGATCATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.23, T:0.60
Consensus pattern (11 bp):
TTGTTGATTGA
Found at i:5452985 original size:15 final size:14
Alignment explanation
Indices: 5452958--5452992 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
5452948 TAAAAAATAT
5452958 TTATTTTTTAAAAA
1 TTATTTTTTAAAAA
*
5452972 TTATTTTTTGAAAA
1 TTATTTTTTAAAAA
*
5452986 TCATTTT
1 TTATTTT
5452993 CAATAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (14 bp):
TTATTTTTTAAAAA
Found at i:5456927 original size:31 final size:31
Alignment explanation
Indices: 5456885--5456946 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
5456875 TAATAATTTT
*
5456885 ATTATTAAATTATTTAAAAGTTTTCATTTAA
1 ATTATTAAATTATTCAAAAGTTTTCATTTAA
* *
5456916 ATTATTGAATTATTCAAAAGTTTTTATTTAA
1 ATTATTAAATTATTCAAAAGTTTTCATTTAA
5456947 GTGGTCATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (31 bp):
ATTATTAAATTATTCAAAAGTTTTCATTTAA
Found at i:5457924 original size:3 final size:3
Alignment explanation
Indices: 5457916--5457946 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
5457906 AGCTTTCCCA
5457916 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
5457947 TATTGCTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:5479018 original size:23 final size:23
Alignment explanation
Indices: 5478970--5479023 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
5478960 TACAATATTC
* *
5478970 AAATAATATTAAAAAAGACAGTA
1 AAATAATAGTAAAAAAGACAGAA
*
5478993 AAATAATAGTAAAAAAGTATA-AA
1 AAATAATAGTAAAAAAG-ACAGAA
5479016 AAATAATA
1 AAATAATA
5479024 TTCAAACAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 25 0.93
24 2 0.07
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (23 bp):
AAATAATAGTAAAAAAGACAGAA
Found at i:5479118 original size:12 final size:12
Alignment explanation
Indices: 5479083--5479143 Score: 70
Period size: 12 Copynumber: 5.2 Consensus size: 12
5479073 ACAAAATTAA
*
5479083 AACAACAAAAAC
1 AACAACAAAAAT
5479095 AACAACAAAAAT
1 AACAACAAAAAT
*
5479107 AACAGCAAAAAT
1 AACAACAAAAAT
* *
5479119 AA-TACGAAAAT
1 AACAACAAAAAT
*
5479130 AACAACCAAAAT
1 AACAACAAAAAT
5479142 AA
1 AA
5479144 TAAAAAAAGT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
11 8 0.20
12 33 0.80
ACGTcount: A:0.70, C:0.18, G:0.03, T:0.08
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:5479151 original size:23 final size:23
Alignment explanation
Indices: 5479083--5479151 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
5479073 ACAAAATTAA
* *
5479083 AACAACAAAAACAACAACAAAAAT
1 AACAACAAAAATAATAA-AAAAAT
* **
5479107 AACAGCAAAAATAATACGAAAAT
1 AACAACAAAAATAATAAAAAAAT
*
5479130 AACAACCAAAATAATAAAAAAA
1 AACAACAAAAATAATAAAAAAA
5479152 GTATCAAAAC
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 23 0.64
24 13 0.36
ACGTcount: A:0.72, C:0.16, G:0.03, T:0.09
Consensus pattern (23 bp):
AACAACAAAAATAATAAAAAAAT
Found at i:5479170 original size:19 final size:19
Alignment explanation
Indices: 5479145--5479189 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
5479135 CCAAAATAAT
* *
5479145 AAAAAAAGTATCAAAACAGT
1 AAAAAAA-TATAAAAACAGC
5479165 AAAAAAATATAAAAACAGC
1 AAAAAAATATAAAAACAGC
5479184 AAAAAA
1 AAAAAA
5479190 CAACAACCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.73, C:0.09, G:0.07, T:0.11
Consensus pattern (19 bp):
AAAAAAATATAAAAACAGC
Found at i:5479170 original size:22 final size:22
Alignment explanation
Indices: 5479145--5479225 Score: 69
Period size: 22 Copynumber: 3.8 Consensus size: 22
5479135 CCAAAATAAT
*
5479145 AAAAAAAGTATCAAAACAGTAA
1 AAAAAAAGTACCAAAACAGTAA
* *
5479167 AAAAATA-TA--AAAACAGCAA
1 AAAAAAAGTACCAAAACAGTAA
* ** *
5479186 AAAACAACAACCAAAATAGTAA
1 AAAAAAAGTACCAAAACAGTAA
*
5479208 AAAAAAAGCACCAAAACA
1 AAAAAAAGTACCAAAACA
5479226 ACAATATAAT
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
19 14 0.31
20 1 0.02
21 2 0.04
22 28 0.62
ACGTcount: A:0.70, C:0.15, G:0.06, T:0.09
Consensus pattern (22 bp):
AAAAAAAGTACCAAAACAGTAA
Found at i:5488364 original size:22 final size:22
Alignment explanation
Indices: 5488336--5488399 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
5488326 AATTTAAAGT
5488336 TTATATTTATCAAATAATTTAA
1 TTATATTTATCAAATAATTTAA
*
5488358 TTATATTTAGT-AATTAATTTTAA
1 TTATATTTA-TCAAATAA-TTTAA
* *
5488381 GTA-ATATATCAAATAATTT
1 TTATATTTATCAAATAATTT
5488400 TATAACTCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
21 4 0.11
22 23 0.66
23 8 0.23
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (22 bp):
TTATATTTATCAAATAATTTAA
Found at i:5494880 original size:22 final size:22
Alignment explanation
Indices: 5494829--5494954 Score: 94
Period size: 23 Copynumber: 5.5 Consensus size: 22
5494819 CTGGGGAAAT
*
5494829 AGTAAGCACACACAGTGCAATCC
1 AGTAGGCACACACAGTGCAAT-C
*
5494852 AGTAGGCACACACAGTGCAATA
1 AGTAGGCACACACAGTGCAATC
** * *
5494874 AGTAGGCGTACATAGCGCAAATC
1 AGTAGGCACACACAGTGC-AATC
5494897 AGTAGGCACACA-AGGTGCGAAAT-
1 AGTAGGCACACACA-GTGC--AATC
* * *
5494920 AGTAAGCACACAAAGTGCGAAAC
1 AGTAGGCACACACAGTGC-AATC
*
5494943 AGTAAGCACACA
1 AGTAGGCACACA
5494955 AAATGTGAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
22 17 0.20
23 63 0.74
24 5 0.06
ACGTcount: A:0.41, C:0.23, G:0.23, T:0.13
Consensus pattern (22 bp):
AGTAGGCACACACAGTGCAATC
Found at i:5494955 original size:23 final size:23
Alignment explanation
Indices: 5494896--5494971 Score: 107
Period size: 23 Copynumber: 3.3 Consensus size: 23
5494886 TAGCGCAAAT
* *
5494896 CAGTAGGCACACAAGGTGCGAAA
1 CAGTAAGCACACAAAGTGCGAAA
*
5494919 TAGTAAGCACACAAAGTGCGAAA
1 CAGTAAGCACACAAAGTGCGAAA
* *
5494942 CAGTAAGCACACAAAATGTGAAA
1 CAGTAAGCACACAAAGTGCGAAA
5494965 CAGTAAG
1 CAGTAAG
5494972 TGCGCTAGCA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.46, C:0.18, G:0.24, T:0.12
Consensus pattern (23 bp):
CAGTAAGCACACAAAGTGCGAAA
Found at i:5497690 original size:15 final size:15
Alignment explanation
Indices: 5497667--5497708 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
5497657 AGCACCCTAC
5497667 TGAACCTGAACCTTT
1 TGAACCTGAACCTTT
* *
5497682 TGTACCTGAACATTT
1 TGAACCTGAACCTTT
5497697 TGAACCTGAACC
1 TGAACCTGAACC
5497709 GGTTCCCCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (15 bp):
TGAACCTGAACCTTT
Found at i:5498601 original size:10 final size:10
Alignment explanation
Indices: 5498586--5498627 Score: 57
Period size: 10 Copynumber: 3.9 Consensus size: 10
5498576 GCCCAACAAA
5498586 ATTTAAATTT
1 ATTTAAATTT
5498596 ATTTAAAATTT
1 ATTT-AAATTT
5498607 AAGTTTAAATTT
1 -A-TTTAAATTT
5498619 ATTTAAATT
1 ATTTAAATT
5498628 AAAAAGTCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 12 0.41
11 7 0.24
12 7 0.24
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (10 bp):
ATTTAAATTT
Found at i:5499231 original size:17 final size:17
Alignment explanation
Indices: 5499211--5499245 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
5499201 AACGAAACAG
* *
5499211 AGGAAGAAGAAAAGGGA
1 AGGAAAAAGAAAAAGGA
5499228 AGGAAAAAGAAAAAGGA
1 AGGAAAAAGAAAAAGGA
5499245 A
1 A
5499246 AAACTAGGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
AGGAAAAAGAAAAAGGA
Found at i:5500539 original size:2 final size:2
Alignment explanation
Indices: 5500532--5500566 Score: 61
Period size: 2 Copynumber: 17.0 Consensus size: 2
5500522 TTGGTTACAA
5500532 AT AT AT AT AT AT AT AT AT AT AT AT AT AT ACT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
5500567 TTTGATATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 30 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:5502592 original size:30 final size:30
Alignment explanation
Indices: 5502556--5502612 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
5502546 CCCAAGAGGT
*
5502556 CCCTAAACTATCCAGAAATCACATTTTAAC
1 CCCTAAACTATCCAAAAATCACATTTTAAC
* * *
5502586 CCCTAAACTTTCTAAAAATTACATTTT
1 CCCTAAACTATCCAAAAATCACATTTT
5502613 TGCCCTCGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.39, C:0.26, G:0.02, T:0.33
Consensus pattern (30 bp):
CCCTAAACTATCCAAAAATCACATTTTAAC
Found at i:5502641 original size:30 final size:29
Alignment explanation
Indices: 5502594--5502700 Score: 110
Period size: 29 Copynumber: 3.7 Consensus size: 29
5502584 ACCCCTAAAC
*
5502594 TTTCTAAAAATTACATTTTTGCCCTCGAA
1 TTTCCAAAAATTACATTTTTGCCCTCGAA
* *
5502623 TTTCCAAAAATTATCA-TTTTACCCTCGGA
1 TTTCCAAAAATTA-CATTTTTGCCCTCGAA
* *
5502652 TGTCCAAAAATTACATTTTTGATCCT-GAA
1 TTTCCAAAAATTACATTTTTG-CCCTCGAA
* *
5502681 TTTTTCAAAAATTACGTTTT
1 -TTTCCAAAAATTACATTTT
5502701 ACACCCGAAC
Statistics
Matches: 64, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
28 2 0.03
29 41 0.64
30 21 0.33
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (29 bp):
TTTCCAAAAATTACATTTTTGCCCTCGAA
Found at i:5502716 original size:58 final size:58
Alignment explanation
Indices: 5502599--5502748 Score: 146
Period size: 58 Copynumber: 2.6 Consensus size: 58
5502589 TAAACTTTCT
* **
5502599 AAAAATTACATTTTTGCCCTCGAATTTCCAAAAATTATCATTTTACCCTCGGATGTCC
1 AAAAATTACATTTTTGCCCTCGAATTTCCAAAAATTATCATTTTACCCTCGAACATCC
* * *
5502657 AAAAATTACATTTTTGATCCT-GAATTTTTCAAAAATTA-CGTTTTACACC-CGAACATCC
1 AAAAATTACATTTTTG-CCCTCGAA-TTTCCAAAAATTATCATTTTAC-CCTCGAACATCC
* * *
5502715 AAAAATTATC-GTTTTGCCCCCGAAGTGTCCAAAA
1 AAAAATTA-CATTTTTGCCCTCGAA-TTTCCAAAA
5502749 TCACCGTTTT
Statistics
Matches: 75, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
57 2 0.03
58 55 0.73
59 18 0.24
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (58 bp):
AAAAATTACATTTTTGCCCTCGAATTTCCAAAAATTATCATTTTACCCTCGAACATCC
Found at i:5502748 original size:30 final size:28
Alignment explanation
Indices: 5502599--5502748 Score: 93
Period size: 29 Copynumber: 5.1 Consensus size: 28
5502589 TAAACTTTCT
* * *
5502599 AAAAATTACATTTTTGCCCTCGAATTTCC
1 AAAAATTAC-GTTTTGCCCCCGAATGTCC
* * * *
5502628 AAAAATTATCATTTTACCCTCGGATGTCC
1 AAAAATTA-CGTTTTGCCCCCGAATGTCC
* ** * * *
5502657 AAAAATTACATTTTTGATCCTGAATTTTTC
1 AAAAATTAC-GTTTTGCCCCCGAA-TGTCC
* * **
5502687 AAAAATTACGTTTTACACCCGAACATCC
1 AAAAATTACGTTTTGCCCCCGAATGTCC
5502715 AAAAATTATCGTTTTGCCCCCGAAGTGTCC
1 AAAAATTA-CGTTTTGCCCCCGAA-TGTCC
5502745 AAAA
1 AAAA
5502749 TCACCGTTTT
Statistics
Matches: 91, Mismatches: 25, Indels: 9
0.73 0.20 0.07
Matches are distributed among these distances:
28 11 0.12
29 60 0.66
30 20 0.22
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (28 bp):
AAAAATTACGTTTTGCCCCCGAATGTCC
Found at i:5505902 original size:25 final size:24
Alignment explanation
Indices: 5505874--5505928 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
5505864 ATATATAATA
5505874 TAATTTAAAATGCTTTT-TAAGAAAT
1 TAATTTAAAATG-TTTTGTAA-AAAT
* * *
5505899 TAATATAAATTGTTTTGTAAAATT
1 TAATTTAAAATGTTTTGTAAAAAT
5505923 TAATTT
1 TAATTT
5505929 GAATATATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (24 bp):
TAATTTAAAATGTTTTGTAAAAAT
Found at i:5512790 original size:31 final size:31
Alignment explanation
Indices: 5512738--5512801 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
5512728 CCCAAAAAGC
* * **
5512738 TTAAGTACTAACTTATAAAAAAGTTTCAAGT
1 TTAAGTACTAAATTAGAAAAAAGTGACAAGT
*
5512769 TTAAGTACTAAATTAGGAAAAAGTGACAAGT
1 TTAAGTACTAAATTAGAAAAAAGTGACAAGT
5512800 TT
1 TT
5512802 TAATATCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (31 bp):
TTAAGTACTAAATTAGAAAAAAGTGACAAGT
Found at i:5519154 original size:30 final size:31
Alignment explanation
Indices: 5519097--5519154 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
5519087 TAGTAAAAGA
*
5519097 AAAATTATATTTTAACTCCTCTAAAAATGAT
1 AAAATTATAATTTAACTCCTCTAAAAATGAT
* *
5519128 AAAATTTTAATTTAA-TCCTTTAAAAAT
1 AAAATTATAATTTAACTCCTCTAAAAAT
5519155 TACACTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.41
Consensus pattern (31 bp):
AAAATTATAATTTAACTCCTCTAAAAATGAT
Found at i:5520472 original size:127 final size:128
Alignment explanation
Indices: 5520142--5520480 Score: 436
Period size: 127 Copynumber: 2.6 Consensus size: 128
5520132 AATGATAGCC
* * *
5520142 TTTAATAATATTAATTTGAATTCGG-GTTTTAATCTATTGTGAGTTGACACGATCCAATATTTTC
1 TTTAATAATATTAA-TTGAGTT-GGAGTTTTAATCTATTGTGAGTTAACACGATTCAATATTTTC
* **
5520206 AATCATTATTATTTTATATATTTTCAGTGAAGTAAAAAAAATTGCATAAAAACTACAGAATGGTA
64 AATCATTATTA--TTAT-TATTTTCAATGAAGTAAAAAAAATCACATAAAAACTACAGAATGGTA
5520271 ACT
126 ACT
* * *
5520274 TTTAATAATATTCATTGAG-T-GAGTTTTAATCTATTGTGAGTTTACACGAGTCAATATTTTCAA
1 TTTAATAATATTAATTGAGTTGGAGTTTTAATCTATTGTGAGTTAACACGATTCAATATTTTCAA
* * * *
5520337 TCATTATTATTATTATTTTTAATGAAGTAAAGAAAATCACATAAAAACTACCGAATGGT-ATT
66 TCATTATTATTATTATTTTCAATGAAGTAAAAAAAATCACATAAAAACTACAGAATGGTAACT
* * * * *
5520399 TTTAATAAGATTAATTGAGTTGGAGTTTTAATTTATTGTGAGCTAATACGATTCAATATTTTTAA
1 TTTAATAATATTAATTGAGTTGGAGTTTTAATCTATTGTGAGTTAACACGATTCAATATTTTCAA
5520464 TCATTATTATT-TTATTT
66 TCATTATTATTATTATTT
5520481 ATTTTAGTGC
Statistics
Matches: 184, Mismatches: 20, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
125 19 0.10
126 47 0.26
127 52 0.28
128 1 0.01
129 47 0.26
130 1 0.01
131 4 0.02
132 13 0.07
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (128 bp):
TTTAATAATATTAATTGAGTTGGAGTTTTAATCTATTGTGAGTTAACACGATTCAATATTTTCAA
TCATTATTATTATTATTTTCAATGAAGTAAAAAAAATCACATAAAAACTACAGAATGGTAACT
Found at i:5523835 original size:14 final size:14
Alignment explanation
Indices: 5523816--5523845 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
5523806 ATATGAAAAG
*
5523816 TTTCTAAGTTTTTT
1 TTTCTAAATTTTTT
5523830 TTTCTAAATTTTTT
1 TTTCTAAATTTTTT
5523844 TT
1 TT
5523846 ATACAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.73
Consensus pattern (14 bp):
TTTCTAAATTTTTT
Found at i:5530998 original size:18 final size:18
Alignment explanation
Indices: 5530975--5531020 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
5530965 TAATTAATTT
5530975 TTAATTAAATAA-ATTTAA
1 TTAATTAAA-AAGATTTAA
*
5530993 TTAATTAAAAAGTTTTAA
1 TTAATTAAAAAGATTTAA
5531011 TTAATTAAAA
1 TTAATTAAAA
5531021 GAAAATATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 2 0.08
18 24 0.92
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
TTAATTAAAAAGATTTAA
Found at i:5549252 original size:33 final size:33
Alignment explanation
Indices: 5549209--5549316 Score: 110
Period size: 33 Copynumber: 3.3 Consensus size: 33
5549199 GAGGCCGAGT
* * *
5549209 AGCAGTGATGATCCCCCTATAAGCATATTAAGC
1 AGCAGGGATGATCCCCCTATAAGCAGATCAAGC
* * *
5549242 AGCTGGGATGATGCCCCC-ATAAGCAGGTCAAGT
1 AGCAGGGATGAT-CCCCCTATAAGCAGATCAAGC
* * * *
5549275 AGCAGGGACGATGCCCCTATAAGCAGGTCAAGT
1 AGCAGGGATGATCCCCCTATAAGCAGATCAAGC
5549308 AGCAGGGAT
1 AGCAGGGAT
5549317 ACCCCTGTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
32 4 0.06
33 54 0.86
34 5 0.08
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.19
Consensus pattern (33 bp):
AGCAGGGATGATCCCCCTATAAGCAGATCAAGC
Found at i:5549279 original size:36 final size:34
Alignment explanation
Indices: 5549246--5549314 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 34
5549236 TTAAGCAGCT
*
5549246 GGGATGATGCCCCCATAAGCAGGTCAAGTAGCA-
1 GGGACGATGCCCCCATAAGCAGGTCAAGTAGCAG
*
5549279 GGGACGATGCCCCTATAAGCAGGTCAAGTAGCAG
1 GGGACGATGCCCCCATAAGCAGGTCAAGTAGCAG
5549313 GG
1 GG
5549315 ATACCCCTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
33 31 0.94
34 2 0.06
ACGTcount: A:0.29, C:0.23, G:0.33, T:0.14
Consensus pattern (34 bp):
GGGACGATGCCCCCATAAGCAGGTCAAGTAGCAG
Found at i:5554993 original size:12 final size:11
Alignment explanation
Indices: 5554963--5554992 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
5554953 TTTAAGTATT
5554963 TAATTTTTAAA
1 TAATTTTTAAA
5554974 TAATTTTTAAA
1 TAATTTTTAAA
5554985 TAATTTTT
1 TAATTTTT
5554993 TTAATTATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TAATTTTTAAA
Found at i:5555814 original size:12 final size:12
Alignment explanation
Indices: 5555797--5555822 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
5555787 ATTGAATTGC
5555797 AATCTGTGTTAT
1 AATCTGTGTTAT
5555809 AATCTGTGTTAT
1 AATCTGTGTTAT
5555821 AA
1 AA
5555823 AATTAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (12 bp):
AATCTGTGTTAT
Found at i:5557032 original size:12 final size:12
Alignment explanation
Indices: 5557012--5557042 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
5557002 GGAATAAAAA
5557012 AAGAAGAAGATG
1 AAGAAGAAGATG
*
5557024 AAGATGAAGATG
1 AAGAAGAAGATG
5557036 AAGAAGA
1 AAGAAGA
5557043 GAGGTGTGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.32, T:0.10
Consensus pattern (12 bp):
AAGAAGAAGATG
Found at i:5560630 original size:91 final size:88
Alignment explanation
Indices: 5560457--5560724 Score: 344
Period size: 87 Copynumber: 3.0 Consensus size: 88
5560447 CCCTAAAAAA
* * * * *
5560457 CCCTCAAATTTTTTCAAAAAAAATCAATTAAGCCCCTATTTTTTT-CACTCACTTAGATACTTGA
1 CCCTCAAATTTTTTCAAAAAAAAACAATTAAGCCTCTATTTTTTTGCACTCAATTGGGTACTTGA
* *
5560521 ACTTTTAGAATGCATCAAAAAGG
66 ACTTTCAAAATGCATCAAAAAGG
*
5560544 CCCTCAAATTTTTTCAAAAAAAAACAATTAAGCCTCTGTTTTTATTTTGCACTCAATTGGGTACT
1 CCCTCAAATTTTTTCAAAAAAAAACAATTAAGCCTC--TATTT-TTTTGCACTCAATTGGGTACT
*
5560609 TGAACTTTCAAAATGCATCAAAAAGA
63 TGAACTTTCAAAATGCATCAAAAAGG
* * * * *
5560635 CCCTTAAACTTTTTC-AAGAAAAGCAATTAAGCCTCCATTTTTTTGCACTCAATTGGGTACTTGA
1 CCCTCAAATTTTTTCAAAAAAAAACAATTAAGCCTCTATTTTTTTGCACTCAATTGGGTACTTGA
* *
5560699 ACTGTCAAAA-ACATCAAAAAGG
66 ACTTTCAAAATGCATCAAAAAGG
5560721 CCCT
1 CCCT
5560725 TTGATCGTTA
Statistics
Matches: 159, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
86 14 0.09
87 67 0.42
88 3 0.02
89 4 0.03
90 22 0.14
91 49 0.31
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (88 bp):
CCCTCAAATTTTTTCAAAAAAAAACAATTAAGCCTCTATTTTTTTGCACTCAATTGGGTACTTGA
ACTTTCAAAATGCATCAAAAAGG
Found at i:5561305 original size:92 final size:90
Alignment explanation
Indices: 5561131--5561339 Score: 222
Period size: 92 Copynumber: 2.3 Consensus size: 90
5561121 TTAGGGACGA
* * * **
5561131 TTCAAGTACCCATTTGAGTGCAAAA-AAATTCAGGGGCTTAATTGATTTTTTTGAAAAAGTTTGA
1 TTCAAGTATCCAATTGAATGCAAAATAAAACCAGGGGCTTAATTGATTTTTTTGAAAAAGTTTGA
* * *
5561195 GGGCCTTTTTGATACATTTTGAAAG
66 AGGCATTTTTGATACATTTTAAAAG
* *** *
5561220 TTCAAGTATCCAATTGAATGCAAAATAAAACCAGGGGCTTAATTGCTTTTTTTTTTTTAAATTTT
1 TTCAAGTATCCAATTGAATGCAAAATAAAACCAGGGGCTTAATTG--ATTTTTTTGAAAAAGTTT
* * *
5561285 GAAGGTATTTTTTATGCATTTTAAAAG
64 GAAGGCATTTTTGATACATTTTAAAAG
* * *
5561312 TTTAAATATCCAAATGAATGCAAAATAA
1 TTCAAGTATCCAATTGAATGCAAAATAA
5561340 GAGCAAAAGT
Statistics
Matches: 98, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
89 22 0.22
90 17 0.17
92 59 0.60
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.39
Consensus pattern (90 bp):
TTCAAGTATCCAATTGAATGCAAAATAAAACCAGGGGCTTAATTGATTTTTTTGAAAAAGTTTGA
AGGCATTTTTGATACATTTTAAAAG
Found at i:5570110 original size:25 final size:24
Alignment explanation
Indices: 5570077--5570124 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
5570067 TGATAATAGT
5570077 TATGTTTTATATTT-TATTATTTTC
1 TATGTTTTAT-TTTATATTATTTTC
*
5570101 TATGCTTTTATTTTATTTTATTTT
1 TATG-TTTTATTTTATATTATTTT
5570125 AATTAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.19, C:0.04, G:0.04, T:0.73
Consensus pattern (24 bp):
TATGTTTTATTTTATATTATTTTC
Found at i:5590023 original size:3 final size:3
Alignment explanation
Indices: 5590015--5590049 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
5590005 ATAGAATCTG
5590015 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
5590050 TCAATTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:5591523 original size:6 final size:6
Alignment explanation
Indices: 5591512--5591537 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
5591502 TTGTTTCTAA
5591512 TTTTCG TTTTCG TTTTCG TTTTCG TT
1 TTTTCG TTTTCG TTTTCG TTTTCG TT
5591538 CTCTTCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.15, T:0.69
Consensus pattern (6 bp):
TTTTCG
Found at i:5597086 original size:21 final size:22
Alignment explanation
Indices: 5597057--5597099 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
5597047 ATTGTAACAT
5597057 TAATAGATAAAAATTTAATTTA
1 TAATAGATAAAAATTTAATTTA
**
5597079 TAAT-GATAAATTTTTAATTTA
1 TAATAGATAAAAATTTAATTTA
5597100 ATATATCCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (22 bp):
TAATAGATAAAAATTTAATTTA
Found at i:5601536 original size:28 final size:28
Alignment explanation
Indices: 5601474--5601529 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
5601464 TAAGAGAAAC
*
5601474 ACAAAAATCAAATATCGTGCTTACTAAA
1 ACAAAAATCAAATATCATGCTTACTAAA
5601502 ACAAAAATCAAATATCATGCTTACTAAA
1 ACAAAAATCAAATATCATGCTTACTAAA
5601530 GAAAAAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.52, C:0.18, G:0.05, T:0.25
Consensus pattern (28 bp):
ACAAAAATCAAATATCATGCTTACTAAA
Found at i:5602143 original size:31 final size:31
Alignment explanation
Indices: 5602108--5602177 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
5602098 AAAATTTATT
* * * *
5602108 ATTTTAATCCCTCTT-ATTAGATAGGTTGTCA
1 ATTTTAATCACT-TTAATTAAATAAGTTGCCA
*
5602139 ATTTTAATTACTTTAATTAAATAAGTTGCCA
1 ATTTTAATCACTTTAATTAAATAAGTTGCCA
5602170 ATTTTAAT
1 ATTTTAAT
5602178 TATTCAAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 2 0.06
31 31 0.94
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47
Consensus pattern (31 bp):
ATTTTAATCACTTTAATTAAATAAGTTGCCA
Found at i:5609101 original size:13 final size:13
Alignment explanation
Indices: 5609085--5609112 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
5609075 TATTTGTTGT
5609085 ATTAATTTAGTGA
1 ATTAATTTAGTGA
5609098 ATTAATTTAGTGA
1 ATTAATTTAGTGA
5609111 AT
1 AT
5609113 CTTATTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.46
Consensus pattern (13 bp):
ATTAATTTAGTGA
Found at i:5614875 original size:34 final size:34
Alignment explanation
Indices: 5614831--5614895 Score: 89
Period size: 33 Copynumber: 1.9 Consensus size: 34
5614821 CTTAAAAGTT
*
5614831 AAAATAATTTTTTTTGGGC-CCTTTAAAAATTGATA
1 AAAATAA-TTTTTTGGGGCGCC-TTAAAAATTGATA
5614866 AAAAT-ATTTTTTGGGGCGCCTTAAAAATTG
1 AAAATAATTTTTTGGGGCGCCTTAAAAATTG
5614896 GAAAATAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 20 0.71
34 3 0.11
35 5 0.18
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.40
Consensus pattern (34 bp):
AAAATAATTTTTTGGGGCGCCTTAAAAATTGATA
Found at i:5614909 original size:34 final size:32
Alignment explanation
Indices: 5614818--5614909 Score: 84
Period size: 33 Copynumber: 2.8 Consensus size: 32
5614808 AAAATTTTGT
* * *
5614818 GCCC-TTAAAAGTT-AAAATAATTTTTTTTGG
1 GCCCTTTAAAAATTGAAAATAAATTTTTTGGG
5614848 GCCCTTTAAAAATTGATAAA-AATATTTTTTGGG
1 GCCCTTTAAAAATTGA-AAATAA-ATTTTTTGGG
5614881 GCGCC-TTAAAAATTGGAAAATAACATTTT
1 GC-CCTTTAAAAATT-GAAAATAA-ATTTT
5614910 GAACCCCTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
30 4 0.08
31 8 0.16
32 3 0.06
33 25 0.49
34 11 0.22
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (32 bp):
GCCCTTTAAAAATTGAAAATAAATTTTTTGGG
Done.