Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 117 of 171
Found at i:37242080 original size:69 final size:67
Alignment explanation
Indices: 37241957--37242107 Score: 180
Period size: 69 Copynumber: 2.2 Consensus size: 67
37241947 ATATACGGAA
* *
37241957 TAAACAAAGAGTACCAAAGTACTAACAGAAAGCACAAAAGTGCTGGGCAACAGAGAGCACACACA
1 TAAACAGAGAGTACCAAAGTACTAACAGAAAGCACAAAAGTGCT--G-AACAGAGAGCAAACACA
37242022 GTG-T
63 GTGCT
*
37242026 TAAACAGAGAGTACACAAAGTACTAATCAGAGAGCACACAAAGTGCT-AATCAGAGAGCAAACAC
1 TAAACAGAGAGTAC-CAAAGTACTAA-CAGAAAGCACA-AAAGTGCTGAA-CAGAGAGCAAACAC
37242090 AGTGCT
62 AGTGCT
*
37242096 AATAACAGAGAG
1 TA-AACAGAGAG
37242108 CACGAGATGT
Statistics
Matches: 72, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
68 2 0.03
69 30 0.42
70 13 0.18
71 19 0.26
72 8 0.11
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.13
Consensus pattern (67 bp):
TAAACAGAGAGTACCAAAGTACTAACAGAAAGCACAAAAGTGCTGAACAGAGAGCAAACACAGTG
CT
Found at i:37249277 original size:23 final size:23
Alignment explanation
Indices: 37249204--37249381 Score: 130
Period size: 23 Copynumber: 7.7 Consensus size: 23
37249194 TATACGGAAC
* *
37249204 AAACAGAGAGTAC-CAAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
*
37249226 -AACAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
37249247 CAGCAACAGAGAGCACACACAGTGCT
1 -A--AACAGAGAGCACACAAAGTGCT
* *
37249273 AAACAGAGAGTACACAAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
* * *
37249296 AATCAGAGAGCAGACAAAGTGTT
1 AAACAGAGAGCACACAAAGTGCT
* * * *
37249319 AATCAGAGAGTAGACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
37249342 AATAACAGAGAGCACGA-GACGTGCT
1 -A-AACAGAGAGCAC-ACAAAGTGCT
*
37249367 AAGCAGAGAGCACAC
1 AAACAGAGAGCACAC
37249382 TAGCGTTCCT
Statistics
Matches: 123, Mismatches: 23, Indels: 19
0.75 0.14 0.12
Matches are distributed among these distances:
21 17 0.14
22 1 0.01
23 68 0.55
24 2 0.02
25 28 0.23
26 7 0.06
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.12
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:37249326 original size:69 final size:69
Alignment explanation
Indices: 37249204--37249380 Score: 182
Period size: 71 Copynumber: 2.5 Consensus size: 69
37249194 TATACGGAAC
37249204 AAACAGAGAGTACCAAAGTACTAACAGAGAGCACATAAGTGCTCAGCAACAGAGAGCACACACAG
1 AAACAGAGAGTACCAAAGTACTAACAGAGAGCACATAAGTGCTCA-CAACAGAGAGCACACACAG
37249269 TGCT-
65 TGCTA
* * * *
37249273 AAACAGAGAGTACACAAAGTACTAATCAGAGAGCAGACA-AAGTG-TTA-ATCAGAGAGTAGACA
1 AAACAGAGAGTAC-CAAAGTACTAA-CAGAGAGC--ACATAAGTGCTCACAACAGAGAGCACACA
37249335 CAGTGCTA
62 CAGTGCTA
* * * *
37249343 ATAACAGAGAGCACGAGACGTGCTAAGCAGAGAGCACA
1 A-AACAGAGAGTACCA-AAGTACTAA-CAGAGAGCACA
37249381 CTAGCGTTCC
Statistics
Matches: 92, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
69 35 0.38
70 13 0.14
71 36 0.39
72 5 0.05
73 3 0.03
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.12
Consensus pattern (69 bp):
AAACAGAGAGTACCAAAGTACTAACAGAGAGCACATAAGTGCTCACAACAGAGAGCACACACAGT
GCTA
Found at i:37253569 original size:12 final size:12
Alignment explanation
Indices: 37253552--37253576 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37253542 AACTTATATT
37253552 TTTTATTTTTTC
1 TTTTATTTTTTC
37253564 TTTTATTTTTTC
1 TTTTATTTTTTC
37253576 T
1 T
37253577 AAAGGGAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTATTTTTTC
Found at i:37255808 original size:80 final size:80
Alignment explanation
Indices: 37255708--37255861 Score: 265
Period size: 80 Copynumber: 1.9 Consensus size: 80
37255698 CCGGATTTCT
*
37255708 TCAGATAAGGATGCTATCACTTCATGTTCTTGGAGTGAAACACCTGGCAAATGCTTTT-TCTTGT
1 TCAGATAAGGATGCTATCACTTCATGTTCTTGGAGTGAAACACCTGGCAAATGCTTTTCT-TTGC
37255772 TGATAAGCATAAGTAA
65 TGATAAGCATAAGTAA
* *
37255788 TCAGATAAGGATGCTATCACTTCATGTTGTTTGAGTGAAACACCTGGCAAATGCTTTTCTTTGCT
1 TCAGATAAGGATGCTATCACTTCATGTTCTTGGAGTGAAACACCTGGCAAATGCTTTTCTTTGCT
37255853 GATAAGCAT
66 GATAAGCAT
37255862 TAGATCTTCC
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
80 69 0.99
81 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (80 bp):
TCAGATAAGGATGCTATCACTTCATGTTCTTGGAGTGAAACACCTGGCAAATGCTTTTCTTTGCT
GATAAGCATAAGTAA
Found at i:37261190 original size:31 final size:30
Alignment explanation
Indices: 37261148--37261217 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
37261138 TGCTGACAAG
*
37261148 GTGACTATTTTGTCAC-TTTTCGATAACGTT-A
1 GTGACTGTTTTGTCACATTTTC-A-AA-GTTGA
*
37261179 GTGACTGTTTTGTTACATTTTCAAAGTTGA
1 GTGACTGTTTTGTCACATTTTCAAAGTTGA
37261209 GTGACTGTT
1 GTGACTGTT
37261218 GTGTTAAATG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 3 0.09
30 12 0.34
31 15 0.43
32 5 0.14
ACGTcount: A:0.21, C:0.13, G:0.20, T:0.46
Consensus pattern (30 bp):
GTGACTGTTTTGTCACATTTTCAAAGTTGA
Found at i:37261214 original size:30 final size:31
Alignment explanation
Indices: 37261148--37261223 Score: 86
Period size: 30 Copynumber: 2.5 Consensus size: 31
37261138 TGCTGACAAG
* *
37261148 GTGACTATTTTGTCACTTTTCGATAACGTTA
1 GTGACTGTTTTGTTACTTTTCGATAACGTTA
37261179 GTGACTGTTTTGTTACATTTTC-A-AA-GTTGA
1 GTGACTGTTTTGTTAC-TTTTCGATAACGTT-A
*
37261209 GTGACTGTTGTGTTA
1 GTGACTGTTTTGTTA
37261224 AATGTAACCA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
29 3 0.08
30 17 0.43
31 15 0.38
32 5 0.12
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.46
Consensus pattern (31 bp):
GTGACTGTTTTGTTACTTTTCGATAACGTTA
Found at i:37266348 original size:20 final size:21
Alignment explanation
Indices: 37266323--37266364 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37266313 CCAAGAAAAA
*
37266323 TAAAAAATCAGATTTTTTTTC
1 TAAAATATCAGATTTTTTTTC
* *
37266344 TAAAATTTCAGTTTTTTTTTC
1 TAAAATATCAGATTTTTTTTC
37266365 CTGACAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.55
Consensus pattern (21 bp):
TAAAATATCAGATTTTTTTTC
Found at i:37267916 original size:13 final size:13
Alignment explanation
Indices: 37267898--37267960 Score: 63
Period size: 13 Copynumber: 4.8 Consensus size: 13
37267888 AGTTTAATAT
37267898 TACTTTTGAAAAG
1 TACTTTTGAAAAG
*
37267911 TACTTTTAAAAAG
1 TACTTTTGAAAAG
* **
37267924 TGCTTTAAAAAAG
1 TACTTTTGAAAAG
* *
37267937 TAATTTTGAAAAA
1 TACTTTTGAAAAG
*
37267950 TATTTTTGAAA
1 TACTTTTGAAA
37267961 TGTTTAGTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.44, C:0.05, G:0.11, T:0.40
Consensus pattern (13 bp):
TACTTTTGAAAAG
Found at i:37268328 original size:13 final size:13
Alignment explanation
Indices: 37268310--37268335 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37268300 TTTTGAAAAG
37268310 TCAAAAATTGCTT
1 TCAAAAATTGCTT
37268323 TCAAAAATTGCTT
1 TCAAAAATTGCTT
37268336 GTTTAGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
TCAAAAATTGCTT
Found at i:37268409 original size:23 final size:23
Alignment explanation
Indices: 37268378--37268427 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
37268368 TACAGTGAAA
*
37268378 AGTGTTTTTTGGAAGCATTGATG
1 AGTGCTTTTTGGAAGCATTGATG
*
37268401 AGTGCTTTTTGGAAGCATTGGTG
1 AGTGCTTTTTGGAAGCATTGATG
37268424 AGTG
1 AGTG
37268428 GAGTCTTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.20, C:0.06, G:0.34, T:0.40
Consensus pattern (23 bp):
AGTGCTTTTTGGAAGCATTGATG
Found at i:37273609 original size:23 final size:23
Alignment explanation
Indices: 37273437--37273597 Score: 148
Period size: 23 Copynumber: 6.9 Consensus size: 23
37273427 CGAAGTACTT
37273437 AACAGTAAGCACAC-AAGTGCTGGGGA
1 AACAGTAAGCACACAAAGTGC----GA
*
37273463 AACAGTAAGCACACACAGTGC-A
1 AACAGTAAGCACACAAAGTGCGA
* ** * * *
37273485 ATCAGTGGGCGCACATAGCGC-A
1 AACAGTAAGCACACAAAGTGCGA
* * *
37273507 AATTAGTAGGCACACGAAGTGCGA
1 AA-CAGTAAGCACACAAAGTGCGA
*
37273531 AACAGTAGGCACACAAAGTGCGA
1 AACAGTAAGCACACAAAGTGCGA
37273554 AACAGTAAGCACACAAAGTGCGA
1 AACAGTAAGCACACAAAGTGCGA
*
37273577 AACAGTAAGCACACACAGTGC
1 AACAGTAAGCACACAAAGTGC
37273598 TGAACGGTAA
Statistics
Matches: 114, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
22 18 0.16
23 74 0.65
24 3 0.03
26 14 0.12
27 5 0.04
ACGTcount: A:0.40, C:0.23, G:0.25, T:0.11
Consensus pattern (23 bp):
AACAGTAAGCACACAAAGTGCGA
Found at i:37279846 original size:23 final size:23
Alignment explanation
Indices: 37279674--37279834 Score: 148
Period size: 23 Copynumber: 6.9 Consensus size: 23
37279664 CGAAGTACTT
37279674 AACAGTAAGCACAC-AAGTGCTGGGGA
1 AACAGTAAGCACACAAAGTGC----GA
*
37279700 AACAGTAAGCACACACAGTGC-A
1 AACAGTAAGCACACAAAGTGCGA
* ** * * *
37279722 ATCAGTGGGCGCACATAGCGC-A
1 AACAGTAAGCACACAAAGTGCGA
* * *
37279744 AATTAGTAGGCACACGAAGTGCGA
1 AA-CAGTAAGCACACAAAGTGCGA
*
37279768 AACAGTAGGCACACAAAGTGCGA
1 AACAGTAAGCACACAAAGTGCGA
37279791 AACAGTAAGCACACAAAGTGCGA
1 AACAGTAAGCACACAAAGTGCGA
*
37279814 AACAGTAAGCACACACAGTGC
1 AACAGTAAGCACACAAAGTGC
37279835 TGAACGGTAA
Statistics
Matches: 114, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
22 18 0.16
23 74 0.65
24 3 0.03
26 14 0.12
27 5 0.04
ACGTcount: A:0.40, C:0.23, G:0.25, T:0.11
Consensus pattern (23 bp):
AACAGTAAGCACACAAAGTGCGA
Found at i:37285501 original size:17 final size:17
Alignment explanation
Indices: 37285481--37285519 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
37285471 GACAATGTAG
37285481 ATGCAACGACAATAAAA
1 ATGCAACGACAATAAAA
* * *
37285498 ATGCAATGACATTAACA
1 ATGCAACGACAATAAAA
37285515 ATGCA
1 ATGCA
37285520 GGGACAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.51, C:0.18, G:0.13, T:0.18
Consensus pattern (17 bp):
ATGCAACGACAATAAAA
Found at i:37286661 original size:17 final size:17
Alignment explanation
Indices: 37286635--37286668 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37286625 AAACTTTTCT
* *
37286635 TTTGAGTTTAAATTTAA
1 TTTGAATTTAAAATTAA
37286652 TTTGAATTTAAAATTAA
1 TTTGAATTTAAAATTAA
37286669 AATTAATTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (17 bp):
TTTGAATTTAAAATTAA
Found at i:37288410 original size:29 final size:29
Alignment explanation
Indices: 37288327--37288411 Score: 77
Period size: 29 Copynumber: 2.9 Consensus size: 29
37288317 TAAATTGTCT
*
37288327 AAAAATT-CTATTTTTAGCCC-CGAACTTTC
1 AAAAATTAC-ATTTTT-GCCCTCGAACTTCC
* * * *
37288356 GAAAGTTACA-TTTTGACCTTGAAACTTCC
1 AAAAATTACATTTTTGCCCTCG-AACTTCC
37288385 AAAAATTACATTTTTGCCCTCGAACTT
1 AAAAATTACATTTTTGCCCTCGAACTT
37288412 ACCTTCGAAC
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
27 3 0.07
28 5 0.12
29 25 0.58
30 10 0.23
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.36
Consensus pattern (29 bp):
AAAAATTACATTTTTGCCCTCGAACTTCC
Found at i:37288474 original size:29 final size:29
Alignment explanation
Indices: 37288426--37288677 Score: 242
Period size: 29 Copynumber: 8.7 Consensus size: 29
37288416 TCGAACTTTC
37288426 AAAAATTACATTTTTAACCCCAAAACTTCT
1 AAAAATTACATTTTT-ACCCCAAAACTTCT
** * *
37288456 AAAAATTACATTTTTACCCTTAAATTTTT
1 AAAAATTACATTTTTACCCCAAAACTTCT
* * *
37288485 AAAAATTCCATTTTTAACCCTAAACTTCT
1 AAAAATTACATTTTTACCCCAAAACTTCT
* * *
37288514 AAAAATTACATTTTTGCCCC-GAACTTCC
1 AAAAATTACATTTTTACCCCAAAACTTCT
* * *
37288542 AAAAATTCCATTTTTGA-TCC-AAACTTCC
1 AAAAATTACATTTTT-ACCCCAAAACTTCT
* *
37288570 AAAAATTCCATTTTTGACCCCAAAATTTCT
1 AAAAATTACATTTTT-ACCCCAAAACTTCT
* *
37288600 AAAAATTATATTTTTACCCCTAAACTT-T
1 AAAAATTACATTTTTACCCCAAAACTTCT
* * *
37288628 CAAAAATTCCATTTTTAACCCTAAAATTTCT
1 -AAAAATTACATTTTT-ACCCCAAAACTTCT
*
37288659 ATAAATTACATTTTTACCC
1 AAAAATTACATTTTTACCC
37288678 TCGGACATTT
Statistics
Matches: 184, Mismatches: 32, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
28 47 0.26
29 80 0.43
30 56 0.30
31 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.02, T:0.38
Consensus pattern (29 bp):
AAAAATTACATTTTTACCCCAAAACTTCT
Found at i:37288675 original size:59 final size:57
Alignment explanation
Indices: 37288422--37288702 Score: 250
Period size: 59 Copynumber: 4.8 Consensus size: 57
37288412 ACCTTCGAAC
* * *
37288422 TTTC-AAAAATTACATTTTTAACCCCAAAAC-TTCTAAAAATTACATTTTTACCCTTAAA
1 TTTCTAAAAATTACATTTTT-A-CCCTAAACTTTC-AAAAATTCCATTTTTACCCTAAAA
* * * * **
37288480 TTTTTAAAAATTCCATTTTTAACCCTAAAC-TTCTAAAAATTACATTTTTGCCC-CGAA
1 TTTCTAAAAATTACATTTTT-ACCCTAAACTTTC-AAAAATTCCATTTTTACCCTAAAA
* * * * * *
37288537 CTTCCAAAAATTCCATTTTTGATCC-AAACTTCCAAAAATTCCATTTTTGACCCCAAAA
1 TTTCTAAAAATTACATTTTT-ACCCTAAACTTTCAAAAATTCCATTTTT-ACCCTAAAA
*
37288595 TTTCTAAAAATTATATTTTTACCCCTAAACTTTCAAAAATTCCATTTTTAACCCTAAAA
1 TTTCTAAAAATTACATTTTTA-CCCTAAACTTTCAAAAATTCCATTTTT-ACCCTAAAA
* **
37288654 TTTCTATAAATTACATTTTTACCCTCGGACATTT-AAAAATTCCATTTTT
1 TTTCTAAAAATTACATTTTTACCCT-AAAC-TTTCAAAAATTCCATTTTT
37288703 TATTCTGATT
Statistics
Matches: 187, Mismatches: 28, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
56 18 0.10
57 28 0.15
58 56 0.30
59 82 0.44
60 3 0.02
ACGTcount: A:0.37, C:0.22, G:0.02, T:0.40
Consensus pattern (57 bp):
TTTCTAAAAATTACATTTTTACCCTAAACTTTCAAAAATTCCATTTTTACCCTAAAA
Found at i:37294393 original size:12 final size:12
Alignment explanation
Indices: 37294366--37294445 Score: 108
Period size: 12 Copynumber: 6.3 Consensus size: 12
37294356 AATAAATATA
37294366 AAAAGAAGAGAAAG
1 AAAA-AAGA-AAAG
37294380 AAAAAAGAAAAG
1 AAAAAAGAAAAG
37294392 AAAAAAGAAAAG
1 AAAAAAGAAAAG
37294404 AAAAAAGAAAAG
1 AAAAAAGAAAAG
37294416 AAAAAAGAAAA-
1 AAAAAAGAAAAG
37294427 AAAAGAGAGAAAAAG
1 AAAA-A-AG-AAAAG
37294442 AAAA
1 AAAA
37294446 GGGGAGGTCG
Statistics
Matches: 62, Mismatches: 0, Indels: 7
0.90 0.00 0.10
Matches are distributed among these distances:
11 4 0.06
12 40 0.65
13 6 0.10
14 8 0.13
15 4 0.06
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:37294400 original size:19 final size:20
Alignment explanation
Indices: 37294366--37294446 Score: 93
Period size: 19 Copynumber: 4.2 Consensus size: 20
37294356 AATAAATATA
37294366 AAAAGAAGAGAAAGAAAAAAG
1 AAAAGAAGA-AAAGAAAAAAG
37294387 AAAAGAA-AAAAG--AAAAG
1 AAAAGAAGAAAAGAAAAAAG
37294404 AAAA-AAGAAAAGAAAAAAG
1 AAAAGAAGAAAAGAAAAAAG
*
37294423 AAAA-AA-AAGAGAGAAAAAG
1 AAAAGAAGAAAAGA-AAAAAG
37294442 AAAAG
1 AAAAG
37294447 GGGAGGTCGA
Statistics
Matches: 54, Mismatches: 1, Indels: 11
0.82 0.02 0.17
Matches are distributed among these distances:
16 2 0.04
17 14 0.26
18 5 0.09
19 25 0.46
20 1 0.02
21 7 0.13
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (20 bp):
AAAAGAAGAAAAGAAAAAAG
Found at i:37294446 original size:24 final size:23
Alignment explanation
Indices: 37294365--37294446 Score: 80
Period size: 23 Copynumber: 3.5 Consensus size: 23
37294355 AAATAAATAT
*
37294365 AAAAAGAAGAGAAAGAAAAAAGA-
1 AAAAAGAAAAGAAA-AAAAAAGAG
37294388 AAAGAA-AAAAGAAAAGAAAAA-AG
1 AAA-AAGAAAAGAAAA-AAAAAGAG
*
37294411 AAAAGAAAAAAGAAAAAAAAGAGAG
1 AAAA-AGAAAAGAAAAAAAA-AGAG
37294436 AAAAAGAAAAG
1 AAAAAGAAAAG
37294447 GGGAGGTCGA
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
22 3 0.06
23 23 0.46
24 18 0.36
25 6 0.12
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (23 bp):
AAAAAGAAAAGAAAAAAAAAGAG
Found at i:37295821 original size:101 final size:101
Alignment explanation
Indices: 37295641--37295981 Score: 330
Period size: 101 Copynumber: 3.4 Consensus size: 101
37295631 GCACCATGAA
* * * *
37295641 ACACGACGGGAAAGATCTAAGATCGCAACGGCGAATCAACTACCGCAAAGATACAAAAGAGAAAG
1 ACACGACGGGAAAGATCTAAGACCGCAACGGCGGATCAACTACCGCAAAAAGACAAAAGAGAAAG
* * *
37295706 GTCTAAGTCGCAACGATAGACCGTGTACCTCAAAAG
66 GTCTAAGTCACAACGACAGACCATGTACCTCAAAAG
* * * * *
37295742 ACACGATGGGAAAGATCTAAGACCGCAACGGCGGATCTAA-TATCGGAAAAAGATAAAAGGGAAA
1 ACACGACGGGAAAGATCTAAGACCGCAACGGCGGATC-AACTACCGCAAAAAGACAAAAGAGAAA
* * *
37295806 GGTGTAAGTCACAACGACAGACTATGTACCTCAGAAG
65 GGTCTAAGTCACAACGACAGACCATGTACCTCAAAAG
* * * * * * * *
37295843 ACACGACGGGAAAGATCTAAGACCGCAGCGGCAGATCCAGTACCGCAAAAACACAGACGGGAAAG
1 ACACGACGGGAAAGATCTAAGACCGCAACGGCGGATCAACTACCGCAAAAAGACAAAAGAGAAAG
* * *
37295908 ATCTAAGACAGCAATGACAGATCCA-GTA-CT-ACAAAG
66 GTCTAAGTCA-CAACGACAGA-CCATGTACCTCA-AAAG
* ** * *
37295944 ATACAGAAAGGAAAGATCTAAGATCGCAACGGCAGATC
1 ACAC-GACGGGAAAGATCTAAGACCGCAACGGCGGATC
37295982 CAGTACCACG
Statistics
Matches: 198, Mismatches: 36, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
100 2 0.01
101 151 0.76
102 43 0.22
103 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.24, T:0.13
Consensus pattern (101 bp):
ACACGACGGGAAAGATCTAAGACCGCAACGGCGGATCAACTACCGCAAAAAGACAAAAGAGAAAG
GTCTAAGTCACAACGACAGACCATGTACCTCAAAAG
Found at i:37295902 original size:51 final size:51
Alignment explanation
Indices: 37295648--37296113 Score: 294
Period size: 51 Copynumber: 9.3 Consensus size: 51
37295638 GAAACACGAC
* * * * * *
37295648 GGGAAAGATCTAAGATCGCAACGGC-GAATCAACTACCGCAAAGATACAAAA
1 GGGAAAGATCTAAGACCGCAACGGCAG-ATCCAGTACCACAAAGACACAGAA
* * * ** * * *
37295699 GAGAAAGGTCTAAG-TCGCAACGATAGA-CCGTGTACCTCAAAAGACAC-GAT
1 GGGAAAGATCTAAGACCGCAACGGCAGATCC-AGTACCAC-AAAGACACAGAA
* * * * * *
37295749 GGGAAAGATCTAAGACCGCAACGGCGGATCTAATATCGGAAAAAGATA-A-AA
1 GGGAAAGATCTAAGACCGCAACGGCAGATCCAGTA-C-CACAAAGACACAGAA
* * * * * * * *
37295800 GGGAAAGGTGTAAG-TCACAACGACAGA-CTATGTACCTCAGAAGACAC-GAC
1 GGGAAAGATCTAAGACCGCAACGGCAGATCCA-GTACCACA-AAGACACAGAA
* * * *
37295850 GGGAAAGATCTAAGACCGCAGCGGCAGATCCAGTACCGCAAAAACACAGAC
1 GGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACAAAGACACAGAA
* * * * *
37295901 GGGAAAGATCTAAGACAGCAATGACAGATCCAGTACTACAAAGATACAGAA
1 GGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACAAAGACACAGAA
* * * *
37295952 AGGAAAGATCTAAGATCGCAACGGCAGATCCAGTACCACGAAGACA-TGAA
1 GGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACAAAGACACAGAA
* ** * * *
37296002 GGGAAAGATCTAAG-CTGCAATAGCGGATCCAGTACCACGAAGACA-TGAA
1 GGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACAAAGACACAGAA
* * * * *
37296051 GAGAAAGATCTAAG-CCGTAACGGCGGATCCAGTACCACGAAGACA-TGAA
1 GGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACAAAGACACAGAA
*
37296100 GAGAAAGATCTAAG
1 GGGAAAGATCTAAG
37296114 CAGCGACAGT
Statistics
Matches: 325, Mismatches: 75, Indels: 32
0.75 0.17 0.07
Matches are distributed among these distances:
48 1 0.00
49 98 0.30
50 73 0.22
51 143 0.44
52 10 0.03
ACGTcount: A:0.42, C:0.21, G:0.25, T:0.13
Consensus pattern (51 bp):
GGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACAAAGACACAGAA
Found at i:37296039 original size:49 final size:49
Alignment explanation
Indices: 37295839--37296142 Score: 263
Period size: 49 Copynumber: 6.1 Consensus size: 49
37295829 ATGTACCTCA
* * * * * * *
37295839 GAAGACACGACGGGAAAGATCTAAGACCGCAGCGGCAGATCCAGTACCGC
1 GAAGACATGAAGGGAAAGATCTAAG-CAGCAACAGCGGATCCAGTACCAC
* * * * * * *
37295889 AAAAACACAGACGGGAAAGATCTAAGACAGCAA-TGACAGATCCAGTACTAC
1 GAAGACA-TGAAGGGAAAGATCTAAG-CAGCAACAG-CGGATCCAGTACCAC
* * * *
37295940 AAAGATACA-GAAAGGAAAGATCTAAG-ATCGCAACGGCAGATCCAGTACCAC
1 GAAG--ACATGAAGGGAAAGATCTAAGCA--GCAACAGCGGATCCAGTACCAC
* *
37295991 GAAGACATGAAGGGAAAGATCTAAGCTGCAATAGCGGATCCAGTACCAC
1 GAAGACATGAAGGGAAAGATCTAAGCAGCAACAGCGGATCCAGTACCAC
* * * *
37296040 GAAGACATGAAGAGAAAGATCTAAGCCGTAACGGCGGATCCAGTACCAC
1 GAAGACATGAAGGGAAAGATCTAAGCAGCAACAGCGGATCCAGTACCAC
* * * *
37296089 GAAGACATGAAGAGAAAGATCTAAGCAGCGACAGTGAATCCAGTACCAC
1 GAAGACATGAAGGGAAAGATCTAAGCAGCAACAGCGGATCCAGTACCAC
37296138 GAAGA
1 GAAGA
37296143 TTTGAAGGAA
Statistics
Matches: 215, Mismatches: 30, Indels: 19
0.81 0.11 0.07
Matches are distributed among these distances:
49 115 0.53
50 22 0.10
51 74 0.34
52 1 0.00
53 3 0.01
ACGTcount: A:0.41, C:0.22, G:0.25, T:0.12
Consensus pattern (49 bp):
GAAGACATGAAGGGAAAGATCTAAGCAGCAACAGCGGATCCAGTACCAC
Found at i:37296085 original size:98 final size:98
Alignment explanation
Indices: 37295851--37296142 Score: 338
Period size: 98 Copynumber: 2.9 Consensus size: 98
37295841 AGACACGACG
* * * * * *
37295851 GGAAAGATCTAAGACCGCAGCGGCAGATCCAGTACCGCAAAAACACAGACGGGAAAGATCTAAGA
1 GGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACGAAGACA-TGAAGGGAAAGATCTAAG-
* * *
37295916 CAGCAAT-GACAGATCCAGTACTACAAAGATACAGAAA
64 CAGCAATAG-CGGATCCAGTACCACGAAG--ACAGAAA
* *
37295953 GGAAAGATCTAAGATCGCAACGGCAGATCCAGTACCACGAAGACATGAAGGGAAAGATCTAAGCT
1 GGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACGAAGACATGAAGGGAAAGATCTAAGCA
37296018 GCAATAGCGGATCCAGTACCACGAAGACATG-AA
66 GCAATAGCGGATCCAGTACCACGAAGACA-GAAA
* * *
37296051 GAGAAAGATCTAAG-CCGTAACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAGC
1 G-GAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACGAAGACATGAAGGGAAAGATCTAAGC
* * * *
37296115 AGCGACAGTGAATCCAGTACCACGAAGA
65 AGCAATAGCGGATCCAGTACCACGAAGA
37296143 TTTGAAGGAA
Statistics
Matches: 167, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
98 75 0.45
99 13 0.08
100 22 0.13
101 17 0.10
102 40 0.24
ACGTcount: A:0.41, C:0.22, G:0.25, T:0.12
Consensus pattern (98 bp):
GGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACGAAGACATGAAGGGAAAGATCTAAGCA
GCAATAGCGGATCCAGTACCACGAAGACAGAAA
Found at i:37296171 original size:98 final size:98
Alignment explanation
Indices: 37295954--37296173 Score: 289
Period size: 98 Copynumber: 2.2 Consensus size: 98
37295944 ATACAGAAAG
* * *
37295954 GAAAGATCTAAGATCGCAACGGCAGATCCAGTACCACGAAGACATGAAGGGAAAGATCTAAGCTG
1 GAAAGATCTAAG-TCGCAACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAGCAG
* *
37296019 CAATAGCGGATCCAGTACCACGAAGACATGAAGA
65 CAACAGCGAATCCAGTACCACGAAGACATGAAGA
* *
37296053 GAAAGATCTAAGCCGTAACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAGCAGC
1 GAAAGATCTAAGTCGCAACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAGCAGC
* * **
37296118 GACAGTGAATCCAGTACCACGAAGATTTGAAG-
66 AACAGCGAATCCAGTACCACGAAGACATGAAGA
* * *
37296150 GAAAAGGTTTATGTCGCAACGGCG
1 G-AAAGATCTAAGTCGCAACGGCG
37296174 AATTCGGTAC
Statistics
Matches: 104, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
97 1 0.01
98 91 0.88
99 12 0.12
ACGTcount: A:0.39, C:0.20, G:0.26, T:0.15
Consensus pattern (98 bp):
GAAAGATCTAAGTCGCAACGGCGGATCCAGTACCACGAAGACATGAAGAGAAAGATCTAAGCAGC
AACAGCGAATCCAGTACCACGAAGACATGAAGA
Found at i:37296895 original size:207 final size:206
Alignment explanation
Indices: 37296532--37297052 Score: 817
Period size: 207 Copynumber: 2.5 Consensus size: 206
37296522 ATCCACAAGT
* * ** * *
37296532 GATGCGATCATCTTCCTGATGAGATACTAAGAAGTAGACCAAATCAAACTAATGCTCGATGTGAG
1 GATGCGGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAAACCCACGCTCGATATGAG
* * * **
37296597 TAAATCTTCGAATCCCAGCTTCCTGATGAGATACTGAGAAGCGGGTCGAAGCAATAAAATGGTTA
66 CAAGTCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGCAATAAAATGGTTA
* *
37296662 GCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGAA
131 GCTTCCTGATGAGATACTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGCGAA
*
37296727 TTGAAACAATC
196 TTGAAACAAAC
*
37296738 GATGCGGTAATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAAACCCACGCTCGATATGAG
1 GATGCGGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAAACCCACGCTCGATATGAG
* *
37296803 CAAGTCTTCGAACCCCGAGCTTCCTGATGAGATACTAAGAAGTAGGTCGAAGTAATAAAATGGTT
66 CAAGTCTTCGAACCCC-AGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGCAATAAAATGGTT
* * *
37296868 AGCTTCCTGATGAGATATTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGTGG
130 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGCGA
37296933 ATTGAAACAAAC
195 ATTGAAACAAAC
* * *
37296945 AATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCACGCTTGATATGAG
1 GATGCGGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAAACCCACGCTCGATATGAG
37297010 CAAGTCTTCGAACCCCCAGCTTCCTGATGAGATACTGAGAAGT
66 CAAGTCTTCGAA-CCCCAGCTTCCTGATGAGATACTGAGAAGT
37297053 GGACCAAATT
Statistics
Matches: 288, Mismatches: 25, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
206 71 0.25
207 213 0.74
208 4 0.01
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (206 bp):
GATGCGGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAAACCCACGCTCGATATGAG
CAAGTCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGCAATAAAATGGTTA
GCTTCCTGATGAGATACTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGCGAA
TTGAAACAAAC
Found at i:37297060 original size:159 final size:159
Alignment explanation
Indices: 37296868--37297210 Score: 578
Period size: 159 Copynumber: 2.2 Consensus size: 159
37296858 TAAAATGGTT
* * *
37296868 AGCTTCCTGATGAGATATTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGTGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGCGA
37296933 ATTGAAACAAACAATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCAC
66 ATTGAAACAAACAATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCAC
* *
37296998 GCTTGATATGAGCAAGTCTTCGAACCCCC
131 GCTTGATATGAACAAATCTTCGAACCCCC
* *
37297027 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGCGA
* **
37297092 ATTGAAACAAGCGGTGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCAC
66 ATTGAAACAAACAATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCAC
*
37297157 GCTTGATATGAACAAATCTTTGAACCCCC
131 GCTTGATATGAACAAATCTTCGAACCCCC
*
37297186 AGCTTCCTAATGAGATACTGAGAAG
1 AGCTTCCTGATGAGATACTGAGAAG
37297211 CAAGTCGAAG
Statistics
Matches: 172, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
159 172 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (159 bp):
AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGCGA
ATTGAAACAAACAATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCAC
GCTTGATATGAACAAATCTTCGAACCCCC
Found at i:37297333 original size:366 final size:366
Alignment explanation
Indices: 37296661--37297417 Score: 1316
Period size: 366 Copynumber: 2.1 Consensus size: 366
37296651 TAAAATGGTT
37296661 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
*
37296726 ATTGAAACAATCGATGCGGTAATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAAACCCAC
66 ATTGAAACAAGCGATGCGGTAATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAAACCCAC
* * * * * *
37296791 GCTCGATATGAGCAAGTCTTCGAACCCCGAGCTTCCTGATGAGATACTAAGAAGTAGGTCGAAGT
131 GCTCGATATGAACAAATCTTCGAACCCCCAGCTTCCTAATGAGATACTAAGAAGCAAGTCGAAGT
* *
37296856 AATAAAATGGTTAGCTTCCTGATGAGATATTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGAT
196 AATAAAATGGTTAGCTTCCTAATGAGATACTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGAT
* * *
37296921 ACAGAGAAGTGGATTGAAACAAACAATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCA
261 ACAAAGAAGAGGATTGAAACAAACAATGCGGTCATCTTCCTGATGAGAAACTGAGAAGAAGACCA
*
37296986 AATCAAACCCACGCTTGATATGAGCAAGTCTTCGAACCCCC
326 AATCAAACCCACGCTCGATATGAGCAAGTCTTCGAACCCCC
37297027 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
* * *
37297092 ATTGAAACAAGCGGTGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCAC
66 ATTGAAACAAGCGATGCGGTAATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAAACCCAC
* * *
37297157 GCTTGATATGAACAAATCTTTGAACCCCCAGCTTCCTAATGAGATACTGAGAAGCAAGTCGAAGT
131 GCTCGATATGAACAAATCTTCGAACCCCCAGCTTCCTAATGAGATACTAAGAAGCAAGTCGAAGT
*
37297222 AATAAAATGGTTAGCTTCCTAATGAGATACTGAGAAGTGGACCAAATCCGTCTTCCTGATGAGAT
196 AATAAAATGGTTAGCTTCCTAATGAGATACTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGAT
*
37297287 ACAAAGAAGAGGATTGAAACAAACGATGCGGTCATCTTCCTGATGAGAAACTGAGAAGAAGACCA
261 ACAAAGAAGAGGATTGAAACAAACAATGCGGTCATCTTCCTGATGAGAAACTGAGAAGAAGACCA
*
37297352 AATCAAACCCATGCTCGATATGAGCAAGTCTTCGAACCCCC
326 AATCAAACCCACGCTCGATATGAGCAAGTCTTCGAACCCCC
37297393 AGCTTCCTGATGAGATACTGAGAAG
1 AGCTTCCTGATGAGATACTGAGAAG
37297418 CAGGTCGAAG
Statistics
Matches: 369, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
366 369 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (366 bp):
AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
ATTGAAACAAGCGATGCGGTAATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAAACCCAC
GCTCGATATGAACAAATCTTCGAACCCCCAGCTTCCTAATGAGATACTAAGAAGCAAGTCGAAGT
AATAAAATGGTTAGCTTCCTAATGAGATACTGAGAAGTGGACCAAATCCGTCTTCCTAATGAGAT
ACAAAGAAGAGGATTGAAACAAACAATGCGGTCATCTTCCTGATGAGAAACTGAGAAGAAGACCA
AATCAAACCCACGCTCGATATGAGCAAGTCTTCGAACCCCC
Found at i:37297531 original size:207 final size:207
Alignment explanation
Indices: 37297027--37297540 Score: 735
Period size: 207 Copynumber: 2.5 Consensus size: 207
37297017 TCGAACCCCC
* *
37297027 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAAT-TCGTCTTCCTGATGAGATACAGAGAAGCG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATCT-GTCTTCCTGATGAGATACAAAGAAGAG
* *
37297091 AATTGAAACAAGCG-GTGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCC
65 GATTGAAACAAGCGAG-GCGGTCATCTTCCTGATGAGAAACTGAGAAGAAGACCAAATCAAACCC
* *
37297155 ACGCTTGATATGAACAAATCTTTGAACCCCCAGCTTCCTAATGAGATACTGAGAAGCAAGTCGAA
129 ACGCTCGATATGAACAAATCTTCGAACCCCCAGCTTCCTAATGAGATACTGAGAAGCAAGTCGAA
*
37297220 GTAATAAAATGGTT
194 GCAATAAAATGGTT
* *
37297234 AGCTTCCTAATGAGATACTGAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAAAGAAGAGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATCTGTCTTCCTGATGAGATACAAAGAAGAGG
* * *
37297299 ATTGAAACAAACGATGCGGTCATCTTCCTGATGAGAAACTGAGAAGAAGACCAAATCAAACCCAT
66 ATTGAAACAAGCGAGGCGGTCATCTTCCTGATGAGAAACTGAGAAGAAGACCAAATCAAACCCAC
* * * *
37297364 GCTCGATATGAGCAAGTCTTCGAACCCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
131 GCTCGATATGAACAAATCTTCGAACCCCCAGCTTCCTAATGAGATACTGAGAAGCAAGTCGAAGC
*
37297429 AATAAAGTGGTT
196 AATAAAATGGTT
* * * * * * *
37297441 AGCTTCTTGATGAGATACGGAGAAGTGAACCAAATCTGTGTTCCTGATGAAACACAAAGAAGTGG
1 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATCTGTCTTCCTGATGAGATACAAAGAAGAGG
** * * *
37297506 ATCAAAACAAGTGAGGCGATCATCTTTCTGATGAG
66 ATTGAAACAAGCGAGGCGGTCATCTTCCTGATGAG
37297541 GTACAGAGAA
Statistics
Matches: 272, Mismatches: 33, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
207 272 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.22
Consensus pattern (207 bp):
AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATCTGTCTTCCTGATGAGATACAAAGAAGAGG
ATTGAAACAAGCGAGGCGGTCATCTTCCTGATGAGAAACTGAGAAGAAGACCAAATCAAACCCAC
GCTCGATATGAACAAATCTTCGAACCCCCAGCTTCCTAATGAGATACTGAGAAGCAAGTCGAAGC
AATAAAATGGTT
Found at i:37297908 original size:15 final size:15
Alignment explanation
Indices: 37297888--37297917 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37297878 TTAAATCCAA
*
37297888 TTTTAACTTTTAATT
1 TTTTAAATTTTAATT
37297903 TTTTAAATTTTAATT
1 TTTTAAATTTTAATT
37297918 CATGATTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTAAATTTTAATT
Found at i:37297952 original size:23 final size:24
Alignment explanation
Indices: 37297926--37297975 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
37297916 TTCATGATTG
* *
37297926 AATTTTAATTT-AGTTTAAGTTTA
1 AATTTTAATTTGAATTTAAATTTA
37297949 AA-TTTAATTTGAATTTAAATTTA
1 AATTTTAATTTGAATTTAAATTTA
37297972 AATT
1 AATT
37297976 AATTAAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 8 0.35
23 14 0.61
24 1 0.04
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (24 bp):
AATTTTAATTTGAATTTAAATTTA
Found at i:37297954 original size:17 final size:17
Alignment explanation
Indices: 37297923--37297972 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
37297913 TAATTCATGA
* *
37297923 TTGAATTTTAATTTAGT
1 TTGAATTTAAATTTAAT
37297940 TT-AAGTTTAAATTTAAT
1 TTGAA-TTTAAATTTAAT
37297957 TTGAATTTAAATTTAA
1 TTGAATTTAAATTTAA
37297973 ATTAATTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 2 0.07
17 25 0.86
18 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (17 bp):
TTGAATTTAAATTTAAT
Found at i:37299690 original size:30 final size:29
Alignment explanation
Indices: 37299648--37299938 Score: 232
Period size: 30 Copynumber: 9.9 Consensus size: 29
37299638 AGAGATCCCT
37299648 AAACTTCCAAAAATTACATTTTTACCCCC
1 AAACTTCCAAAAATTACATTTTTACCCCC
* * *
37299677 GAACTTCCAAAAAATACATTTTTGACCCCA
1 AAACTTCCAAAAATTACATTTTT-ACCCCC
* * * *
37299707 AAACTTTCAAAAATTATATTTTCA-ACCC
1 AAACTTCCAAAAATTACATTTTTACCCCC
* * *
37299735 AAACTTTCAAAAATTACATTTTTAACCTCG
1 AAACTTCCAAAAATTACATTTTT-ACCCCC
* *
37299765 AAACTTCCCAAAATTACA-TTTTACCCCT
1 AAACTTCCAAAAATTACATTTTTACCCCC
*
37299793 AAACTTCCAAAAATT-CTATTTTTAACCCCA
1 AAACTTCCAAAAATTAC-ATTTTT-ACCCCC
*** * * *
37299823 AAACTTTTGAATATTACATTTCTATCCCC
1 AAACTTCCAAAAATTACATTTTTACCCCC
* **
37299852 AAACTTCCAAAAATTCCATTTTTGTCCCC
1 AAACTTCCAAAAATTACATTTTTACCCCC
* * **
37299881 AAAATT-TATAAACATTACATTTTTACCCTT
1 AAACTTCCA-AAA-ATTACATTTTTACCCCC
*
37299911 GAA-TATCCAAAAATTACCATTTTTACCC
1 AAACT-TCCAAAAATTA-CATTTTTACCC
37299939 TTGAGAGTCC
Statistics
Matches: 206, Mismatches: 44, Indels: 23
0.75 0.16 0.08
Matches are distributed among these distances:
27 1 0.00
28 43 0.21
29 70 0.34
30 90 0.44
31 2 0.01
ACGTcount: A:0.38, C:0.25, G:0.02, T:0.35
Consensus pattern (29 bp):
AAACTTCCAAAAATTACATTTTTACCCCC
Found at i:37299757 original size:58 final size:59
Alignment explanation
Indices: 37299648--37299935 Score: 253
Period size: 58 Copynumber: 4.9 Consensus size: 59
37299638 AGAGATCCCT
* * * *
37299648 AAACTTCCAAAAATTACATTTTTACCCCCGAACTTCCAAAAAATACATTTTTGACCCCA
1 AAACTTCCAAAAATTACATTTTCACCCCCAAACTTCCAAAAATTACATTTTTAACCCCA
* * * * * *
37299707 AAACTTTCAAAAATTATATTTTCA-ACCCAAACTTTCAAAAATTACATTTTTAACCTCG
1 AAACTTCCAAAAATTACATTTTCACCCCCAAACTTCCAAAAATTACATTTTTAACCCCA
* *
37299765 AAACTTCCCAAAATTACATTTT-ACCCCTAAACTTCCAAAAATT-CTATTTTTAACCCCA
1 AAACTTCCAAAAATTACATTTTCACCCCCAAACTTCCAAAAATTAC-ATTTTTAACCCCA
*** * * * **
37299823 AAACTTTTGAATATTACA-TTTCTATCCCCAAACTTCCAAAAATTCCATTTTTGTCCCCA
1 AAACTTCCAAAAATTACATTTTC-ACCCCCAAACTTCCAAAAATTACATTTTTAACCCCA
* ** * * ***
37299882 AAATTTATAAACATTACATTTTTACCCTTGAA-TATCCAAAAATTACCATTTTTA
1 AAACTTCCAAAAATTACATTTTCACCCCCAAACT-TCCAAAAATTA-CATTTTTA
37299936 CCCTTGAGAG
Statistics
Matches: 184, Mismatches: 37, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
57 5 0.03
58 88 0.48
59 80 0.43
60 11 0.06
ACGTcount: A:0.38, C:0.25, G:0.02, T:0.35
Consensus pattern (59 bp):
AAACTTCCAAAAATTACATTTTCACCCCCAAACTTCCAAAAATTACATTTTTAACCCCA
Found at i:37299952 original size:29 final size:30
Alignment explanation
Indices: 37299894--37299962 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 30
37299884 ATTTATAAAC
37299894 ATTA-CATTTTTACCCTTGAATATCCAAAA
1 ATTACCATTTTTACCCTTGAATATCCAAAA
*
37299923 ATTACCATTTTTACCCTTGAGA-GTCC-AAA
1 ATTACCATTTTTACCCTTGA-ATATCCAAAA
37299952 ATTACCATTTT
1 ATTACCATTTT
37299963 GCCCTCGGGT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
29 18 0.49
30 18 0.49
31 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (30 bp):
ATTACCATTTTTACCCTTGAATATCCAAAA
Found at i:37299977 original size:28 final size:29
Alignment explanation
Indices: 37299894--37299980 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 29
37299884 ATTTATAAAC
* *
37299894 ATTA-CATTTTTACCCTTGAATATCCAAAA
1 ATTACCATTTTTACCCTCGAGTATCC-AAA
*
37299923 ATTACCATTTTTACCCTTGAG-AGTCCAAA
1 ATTACCATTTTTACCCTCGAGTA-TCCAAA
* *
37299952 ATTACCA-TTTTGCCCTCGGGTATCCAAA
1 ATTACCATTTTTACCCTCGAGTATCCAAA
37299980 A
1 A
37299981 AGTCTCATTT
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
28 17 0.33
29 16 0.31
30 18 0.35
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.34
Consensus pattern (29 bp):
ATTACCATTTTTACCCTCGAGTATCCAAA
Found at i:37299981 original size:29 final size:30
Alignment explanation
Indices: 37299894--37299981 Score: 94
Period size: 29 Copynumber: 3.0 Consensus size: 30
37299884 ATTTATAAAC
* *
37299894 ATTA-CATTTTTACCCTTGAATATCCAAAA
1 ATTACCATTTTTACCCTCGAGTATCCAAAA
*
37299923 ATTACCATTTTTACCCTTGAG-AGTCC-AAA
1 ATTACCATTTTTACCCTCGAGTA-TCCAAAA
* *
37299952 ATTACCA-TTTTGCCCTCGGGTATCCAAAA
1 ATTACCATTTTTACCCTCGAGTATCCAAAA
37299981 A
1 A
37299982 GTCTCATTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
28 13 0.25
29 20 0.39
30 18 0.35
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (30 bp):
ATTACCATTTTTACCCTCGAGTATCCAAAA
Found at i:37308187 original size:161 final size:161
Alignment explanation
Indices: 37307921--37308246 Score: 528
Period size: 161 Copynumber: 2.0 Consensus size: 161
37307911 ATCAGTGATG
* *
37307921 AAGGTTCACACTTCGATTGTCGTTATATCGAAGATGCATTAACAAGGTATGGGATAAATCATAAA
1 AAGGTTCACACGTCGATTGTCGTTACATCGAAGATGCATTAACAAGGTATGGGATAAATCATAAA
* * *
37307986 ATTACGACCGCATATCATCCCTAGACGAATGGATAAGCGGAGATATCAAACAGAGAGATTAAATC
66 ACTACGACCGCATATCATCCCCAGACGAATGGACAAGCGGAGATATCAAACAGAGAGATTAAATC
* *
37308051 AATTTTAGAAAAGGTTGTTGATCCTACACGC
131 AATTTTAGAAAAGGTTATTGATCCTACACAC
* *
37308082 AAGGTTCACACGTCGATTGTCGTTACATTGAAGATGCGTTAACAAGGTATGGGATAAATCATAAA
1 AAGGTTCACACGTCGATTGTCGTTACATCGAAGATGCATTAACAAGGTATGGGATAAATCATAAA
** *
37308147 ACTACGATTGCATATCATCCCCAGGA-GAATGGACAAGCGGAGATATCAAATAGAGAGATTAAAT
66 ACTACGACCGCATATCATCCCCA-GACGAATGGACAAGCGGAGATATCAAACAGAGAGATTAAAT
37308211 CAATTTTAGAAAAGGTTATTGATCCTACACAC
130 CAATTTTAGAAAAGGTTATTGATCCTACACAC
37308243 AAGG
1 AAGG
37308247 ATTGGGCGTC
Statistics
Matches: 152, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
161 150 0.99
162 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (161 bp):
AAGGTTCACACGTCGATTGTCGTTACATCGAAGATGCATTAACAAGGTATGGGATAAATCATAAA
ACTACGACCGCATATCATCCCCAGACGAATGGACAAGCGGAGATATCAAACAGAGAGATTAAATC
AATTTTAGAAAAGGTTATTGATCCTACACAC
Found at i:37311298 original size:12 final size:12
Alignment explanation
Indices: 37311281--37311330 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
37311271 TAAGTTCTAT
37311281 TTCTTCTTTCTC
1 TTCTTCTTTCTC
37311293 TTCTTCCTTTC-C
1 TTCTT-CTTTCTC
37311305 TTCTTCTTGT-TC
1 TTCTTCTT-TCTC
* *
37311317 TTCATCCTTCTC
1 TTCTTCTTTCTC
37311329 TT
1 TT
37311331 AATCGCTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
11 4 0.12
12 23 0.72
13 5 0.16
ACGTcount: A:0.02, C:0.34, G:0.02, T:0.62
Consensus pattern (12 bp):
TTCTTCTTTCTC
Found at i:37321089 original size:22 final size:24
Alignment explanation
Indices: 37321062--37321118 Score: 64
Period size: 28 Copynumber: 2.3 Consensus size: 24
37321052 TTAGCCTTTG
37321062 TTTCTTT-A-TTTGTAAGGTCATT
1 TTTCTTTAAGTTTGTAAGGTCATT
37321084 TTTCTTTAAAAGTGTTTGTAAGGTCATT
1 TTTCTTT--AA--GTTTGTAAGGTCATT
37321112 TTTCTTT
1 TTTCTTT
37321119 GAAAGTGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
22 7 0.24
25 1 0.03
28 21 0.72
ACGTcount: A:0.19, C:0.09, G:0.14, T:0.58
Consensus pattern (24 bp):
TTTCTTTAAGTTTGTAAGGTCATT
Found at i:37321110 original size:28 final size:28
Alignment explanation
Indices: 37321070--37321126 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
37321060 TGTTTCTTTA
37321070 TTTGTAAGGTCATTTTTCTTTAAAAGTG
1 TTTGTAAGGTCATTTTTCTTTAAAAGTG
*
37321098 TTTGTAAGGTCATTTTTCTTTGAAAGTG
1 TTTGTAAGGTCATTTTTCTTTAAAAGTG
37321126 T
1 T
37321127 ATGTTTCCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.23, C:0.07, G:0.19, T:0.51
Consensus pattern (28 bp):
TTTGTAAGGTCATTTTTCTTTAAAAGTG
Found at i:37323122 original size:25 final size:25
Alignment explanation
Indices: 37323088--37323209 Score: 183
Period size: 25 Copynumber: 4.8 Consensus size: 25
37323078 TGAAGTACTT
*
37323088 AACAGAAGCACATAAGTGCTGGGGA
1 AACAGAAGCACATAAGTGCTGGAGA
*
37323113 AACAGGAGCACATAAGTGCTGGAGA
1 AACAGAAGCACATAAGTGCTGGAGA
37323138 AACAGAAGCACATAAGTGCTGGAGA
1 AACAGAAGCACATAAGTGCTGGAGA
37323163 AACAGAAGCACATAAGTGCTGG-GA
1 AACAGAAGCACATAAGTGCTGGAGA
* *
37323187 AACAGTAGGCACACACAGTGCTG
1 AACAG-AAGCACATA-AGTGCTG
37323210 AACAGAAGCA
Statistics
Matches: 90, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
24 7 0.08
25 76 0.84
26 7 0.08
ACGTcount: A:0.40, C:0.18, G:0.30, T:0.12
Consensus pattern (25 bp):
AACAGAAGCACATAAGTGCTGGAGA
Found at i:37323221 original size:22 final size:22
Alignment explanation
Indices: 37323163--37323293 Score: 122
Period size: 22 Copynumber: 5.9 Consensus size: 22
37323153 GTGCTGGAGA
*
37323163 AACAGAAGCACATA-AGTGCTGGG
1 AACAGAAGCACACACAGTGCT--G
*
37323186 AAACAGTAGGCACACACAGTGCTG
1 -AACAG-AAGCACACACAGTGCTG
* *
37323210 AACAGAAGCACACATAGTGTTG
1 AACAGAAGCACACACAGTGCTG
* *
37323232 AACAGAAGCACACGCAGT-TTG
1 AACAGAAGCACACACAGTGCTG
* * * *
37323253 ATCAAAAGCAAACACAGTACTG
1 AACAGAAGCACACACAGTGCTG
37323275 AACAGAAGCACACACAGTG
1 AACAGAAGCACACACAGTG
37323294 TTCCTTAATG
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
21 17 0.19
22 47 0.53
23 5 0.06
24 6 0.07
25 7 0.08
26 6 0.07
ACGTcount: A:0.42, C:0.22, G:0.23, T:0.13
Consensus pattern (22 bp):
AACAGAAGCACACACAGTGCTG
Found at i:37326770 original size:17 final size:18
Alignment explanation
Indices: 37326737--37326783 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
37326727 TATTAGTGTT
37326737 TAAAAAGAAAGAAAAA-TG
1 TAAAAAGAAA-AAAAATTG
*
37326755 TTAAAAGAAAAAAAATTG
1 TAAAAAGAAAAAAAATTG
37326773 TAAAAAGAAAA
1 TAAAAAGAAAA
37326784 TTATTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 5 0.19
18 21 0.81
ACGTcount: A:0.72, C:0.00, G:0.13, T:0.15
Consensus pattern (18 bp):
TAAAAAGAAAAAAAATTG
Found at i:37329333 original size:22 final size:22
Alignment explanation
Indices: 37329308--37329350 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
37329298 CACATAGCTC
*
37329308 CACCACCGTTGGACCACCACTT
1 CACCACCGTCGGACCACCACTT
* *
37329330 CACCATCGTCGGACGACCACT
1 CACCACCGTCGGACCACCACT
37329351 CCTTTATATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.44, G:0.16, T:0.16
Consensus pattern (22 bp):
CACCACCGTCGGACCACCACTT
Found at i:37330182 original size:21 final size:21
Alignment explanation
Indices: 37330156--37330206 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
37330146 TTCAACTATG
37330156 ATTAAACTTAATCATTT-T-AAT
1 ATTAAA-TTAAT-ATTTATAAAT
37330177 ATTAAATTAATATTTATAAAT
1 ATTAAATTAATATTTATAAAT
*
37330198 ATTATATTA
1 ATTAAATTA
37330207 GTTTAATACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 4 0.15
20 6 0.22
21 17 0.63
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
ATTAAATTAATATTTATAAAT
Found at i:37331682 original size:80 final size:80
Alignment explanation
Indices: 37331556--37331707 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
37331546 TCCAAATCTG
* * * * * **
37331556 TCAATTCATGGAACCTAGTGTCTAGTGGATAAATCGCTATAAGTGAGCTCTGCTCTAGTTAGATT
1 TCAATTCATGGAACCCAGTGCCTAGCGGATAAATCGATATAAGTGAGCCCAACTCTAGTTAGATT
37331621 AACCAACAAAATCCA
66 AACCAACAAAATCCA
* * *
37331636 TCAATTCATGGCACCCAGTGCCTAGCGGATAAA-CTATGATAAGTGAGCCCAACTCTAGTTGGAT
1 TCAATTCATGGAACCCAGTGCCTAGCGGATAAATCGAT-ATAAGTGAGCCCAACTCTAGTTAGAT
37331700 TAACCAAC
65 TAACCAAC
37331708 GATTTTGCGC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
79 2 0.03
80 59 0.97
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (80 bp):
TCAATTCATGGAACCCAGTGCCTAGCGGATAAATCGATATAAGTGAGCCCAACTCTAGTTAGATT
AACCAACAAAATCCA
Found at i:37333240 original size:17 final size:17
Alignment explanation
Indices: 37333218--37333270 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 17
37333208 ATAAAATACT
37333218 ATTAAAATAAGTATTAA-
1 ATTAAAATAA-TATTAAC
*
37333235 ATTAAATTTAATATTAAAC
1 ATTAAA-ATAATATT-AAC
37333254 TATTAAAATAATATTAA
1 -ATTAAAATAATATTAA
37333271 TTTTGGAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
17 10 0.33
18 7 0.23
19 7 0.23
20 6 0.20
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
ATTAAAATAATATTAAC
Found at i:37335551 original size:2 final size:2
Alignment explanation
Indices: 37335544--37335571 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
37335534 TTGTTTTGGG
37335544 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37335572 TATTTTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37344509 original size:14 final size:15
Alignment explanation
Indices: 37344479--37344517 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
37344469 TGCTTGCGTA
37344479 TTAATTTTTAGGGTT
1 TTAATTTTTAGGGTT
*
37344494 TTAATTTTTA-GTTT
1 TTAATTTTTAGGGTT
*
37344508 TTGATTTTTA
1 TTAATTTTTA
37344518 TAACGCCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.67
Consensus pattern (15 bp):
TTAATTTTTAGGGTT
Found at i:37372951 original size:110 final size:110
Alignment explanation
Indices: 37372675--37373214 Score: 566
Period size: 110 Copynumber: 4.9 Consensus size: 110
37372665 CACTTCGTTG
* * * * * *
37372675 TTTGACCCACTTTTCTGTA-TCTCACTAGGAATATGGGATTTTGAAGTTTCACTCCACTCCACTA
1 TTTGACCCACTTCTCTATACT-TCACCAAGAAGATGGGA-TTCGAAGTTTCACTCCACTCCACTA
* * * * * ** * *
37372739 TATCCTTAGGGACGTTGAGCTCGGCTTCATTATTTTTATTCA-ACACACT
64 TAACCTCAAGGACGTTGAGCTCCGCTTCATTGTTTCGA-TCATA-TC-GT
* * * * *
37372788 GTTTGCACCCACTTCTCTGTACCTT-ACCAGGAAGATGGGATTTGAAGTCTCACTCCACTCCAAT
1 -TTTG-ACCCACTTCTCTATA-CTTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCCACT
* * * * **
37372852 ATAACCTCAAGGGCATTGAGCTCTGCTTCATTGTTTCAATCATGCCGT
63 ATAACCTCAAGGACGTTGAGCTCCGCTTCATTGTTTCGATCATATCGT
* * * *
37372900 TTTGACCCACTCCTCTATATTTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCTACTGTA
1 TTTGACCCACTTCTCTATACTTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCCACTATA
37372965 ACCTCAAGGACGTTGAGCTCCGCTTCATTGTTTCGATCATATCGT
66 ACCTCAAGGACGTTGAGCTCCGCTTCATTGTTTCGATCATATCGT
* * * *
37373010 TTTGACCCATTTCTCTGTACCTT-ACCAGGAAGATGGGATTCGAAGTTTCACTCCACTCTACTAT
1 TTTGACCCACTTCTCTATA-CTTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCCACTAT
* * *
37373074 ATCCTCAAGGATGTTAAGCTCCGCTTCATTGTTTCGATCATATCGT
65 AACCTCAAGGACGTTGAGCTCCGCTTCATTGTTTCGATCATATCGT
* *
37373120 TTTGACCCACTTCTCTATACCTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCCACTGTA
1 TTTGACCCACTTCTCTATACTTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCCACTATA
* * * * *
37373185 TCCTTAGGGATGTTTGAGCTCTGCTTCATT
66 ACCTCAAGGACG-TTGAGCTCCGCTTCATT
37373215 TTGGTCTACT
Statistics
Matches: 367, Mismatches: 51, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
109 4 0.01
110 252 0.69
111 21 0.06
112 1 0.00
113 4 0.01
114 56 0.15
115 27 0.07
116 1 0.00
117 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.34
Consensus pattern (110 bp):
TTTGACCCACTTCTCTATACTTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCCACTATA
ACCTCAAGGACGTTGAGCTCCGCTTCATTGTTTCGATCATATCGT
Found at i:37373064 original size:220 final size:224
Alignment explanation
Indices: 37372675--37373214 Score: 694
Period size: 220 Copynumber: 2.4 Consensus size: 224
37372665 CACTTCGTTG
* * * * * * *
37372675 TTTGACCCACTTTTCTGTATCTCACTAGGAATATGGGATTTTGAAGTTTCACTCCACTCCACTAT
1 TTTGACCCACTTCTCTATATCTCACCAAGAAGATGGGA-TTCGAAGTTTCACTCCACTCCACTGT
* **
37372740 ATCCTTAGGGACGTTGAGCTCGGCTTCATTATTTTTATTCAACACACTGTTTGCACCCACTTCTC
65 ATCCTTAGGGACGTTGAGCTCCGCTTCATTATTTCGATTCAACACACTGTTTGCACCCACTTCTC
* * *
37372805 TGTACCTTACCAGGAAGATGGGATTTGAAGTCTCACTCCACTCCAATATAACCTCAAGGGCATTG
130 TGTACCTTACCAGGAAGATGGGATTCGAAGTCTCACTCCACTCCAATATAACCTCAAGGACATTA
* *
37372870 AGCTCTGCTTCATTGTTTCAATCATGCCGT
195 AGCTCCGCTTCATTGTTTCAATCATACCGT
* * *
37372900 TTTGACCCACTCCTCTATATTTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCTACTGTA
1 TTTGACCCACTTCTCTATATCTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCCACTGTA
* * * * * * *
37372965 ACCTCAAGGACGTTGAGCTCCGCTTCATTGTTTCGA-TC-ATA-TC-GTTTTG-ACCCATTTCTC
66 TCCTTAGGGACGTTGAGCTCCGCTTCATTATTTCGATTCAACACACTG-TTTGCACCCACTTCTC
* * * * **
37373025 TGTACCTTACCAGGAAGATGGGATTCGAAGTTTCACTCCACTCTACTATATCCTCAAGGATGTTA
130 TGTACCTTACCAGGAAGATGGGATTCGAAGTCTCACTCCACTCCAATATAACCTCAAGGACATTA
* *
37373090 AGCTCCGCTTCATTGTTTCGATCATATCGT
195 AGCTCCGCTTCATTGTTTCAATCATACCGT
*
37373120 TTTGACCCACTTCTCTATACCTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCCACTGTA
1 TTTGACCCACTTCTCTATATCTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCCACTGTA
* *
37373185 TCCTTAGGGATGTTTGAGCTCTGCTTCATT
66 TCCTTAGGGACG-TTGAGCTCCGCTTCATT
37373215 TTGGTCTACT
Statistics
Matches: 271, Mismatches: 42, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
220 162 0.60
221 21 0.08
222 2 0.01
223 2 0.01
224 53 0.20
225 31 0.11
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.34
Consensus pattern (224 bp):
TTTGACCCACTTCTCTATATCTCACCAAGAAGATGGGATTCGAAGTTTCACTCCACTCCACTGTA
TCCTTAGGGACGTTGAGCTCCGCTTCATTATTTCGATTCAACACACTGTTTGCACCCACTTCTCT
GTACCTTACCAGGAAGATGGGATTCGAAGTCTCACTCCACTCCAATATAACCTCAAGGACATTAA
GCTCCGCTTCATTGTTTCAATCATACCGT
Found at i:37377344 original size:20 final size:21
Alignment explanation
Indices: 37377310--37377348 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
37377300 GAGATGCTTG
*
37377310 TTTCGATCTTTATTTCCTTCT
1 TTTCGATCTTCATTTCCTTCT
37377331 TTTC-ATCTTCATTTCCTT
1 TTTCGATCTTCATTTCCTT
37377349 GGCTCACAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.10, C:0.26, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTCGATCTTCATTTCCTTCT
Found at i:37387103 original size:123 final size:124
Alignment explanation
Indices: 37386923--37387146 Score: 283
Period size: 123 Copynumber: 1.8 Consensus size: 124
37386913 GTTTCATTGA
* * *
37386923 TTTGGTCTACTTCTCTGTATCTCACCAGGAAGATGACCGCTTAATTATCTGACCCACTTCTCTAT
1 TTTGGTCTACTTATCTGTATCTCACCAGGAAGATGAACACTTAATTATCTGACCCACTTCTCTAT
* *
37386988 ATCTCATCAGGAAGATAGG-TTTTCGAAGTTTTACTCACGTTTGAGCTTCACCTAATTAT
66 ATCTCACCAGGAAGATAGGATTTT-GAAGTTTCACTCACGTTTGAGCTTCACCTAATTAT
** * * * * *
37387047 TTTGGT-TCACTTATCTGTA-CTCATTAGGAAGATGAACACTTCATTTTTTGACCCACTTCTTTG
1 TTTGGTCT-ACTTATCTGTATCTCACCAGGAAGATGAACACTTAATTATCTGACCCACTTCTCTA
* *
37387110 TATCTCACCAGGAATATGGGATTTTGAAGTTTCACTC
65 TATCTCACCAGGAAGATAGGATTTTGAAGTTTCACTC
37387147 CACCCCACTG
Statistics
Matches: 84, Mismatches: 14, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
123 64 0.76
124 20 0.24
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (124 bp):
TTTGGTCTACTTATCTGTATCTCACCAGGAAGATGAACACTTAATTATCTGACCCACTTCTCTAT
ATCTCACCAGGAAGATAGGATTTTGAAGTTTCACTCACGTTTGAGCTTCACCTAATTAT
Found at i:37387385 original size:110 final size:110
Alignment explanation
Indices: 37387092--37387602 Score: 558
Period size: 110 Copynumber: 4.6 Consensus size: 110
37387082 ACACTTCATT
* * * *
37387092 TTTTGACCCACTTCTTTGTATCTCACCAGGAATATGGGATTTTGAAGTTTCACTCCACCCCACTG
1 TTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGGGA-TTTGAAGTTTCACTCCACTCCACTG
* * * * *** * *
37387157 TATCCTCAGGGATGTTGATCTCGGTTTCATTGTTTTGATTCA-ATACA
65 TAACCTCAAGGACGTTGAGCTCCACTTCATTATTTCGA-TCATAT-CA
* * * *
37387204 CTGTTTGCACCCACTTCTCTATACCTCACTAGGAAGATAGGATTTGAAGTCTCACTCCACTCCAC
1 -T-TTTG-ACCCACTTCTCTGTACCTCACCAGGAAGATGGGATTTGAAGTTTCACTCCACTCCAC
* ** * **
37387269 TATAACCTCAAGGACGTTGAGCTCTGCTTCATTGTTTCGATCATGCCA
63 TGTAACCTCAAGGACGTTGAGCTCCACTTCATTATTTCGATCATATCA
* * * * * * *
37387317 TTTTGACCCACATCTTTGTACCTTACCAAGAAAATAGG-TTTCGAAGTTTCACTCCACTCTACTG
1 TTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGGGATTT-GAAGTTTCACTCCACTCCACTG
* * *
37387381 TAACCTTAGGGATGTTGAGCTCCACTTCATTATTTCGATCATATCA
65 TAACCTCAAGGACGTTGAGCTCCACTTCATTATTTCGATCATATCA
* * *
37387427 TTTTGACCCACTTCTCTATACCTTACCAGGAAGATGGGATTCGAAGTTTCACTCCACTCCACTGT
1 TTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGGGATTTGAAGTTTCACTCCACTCCACTGT
* * *
37387492 ATCCTCAAGGACGTTGAGCTCCACTTCATTATTTCAATCATATCG
66 AACCTCAAGGACGTTGAGCTCCACTTCATTATTTCGATCATATCA
* * * *
37387537 TTTTGACCTAGTTCTCTGTACCTCACCAGGAAGATGGGATTTGATGTTTCACTCCACTCTACTGT
1 TTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGGGATTTGAAGTTTCACTCCACTCCACTGT
37387602 A
66 A
37387603 TCCTTAGGAA
Statistics
Matches: 336, Mismatches: 57, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
109 3 0.01
110 235 0.70
111 6 0.02
112 1 0.00
113 6 0.02
114 57 0.17
115 28 0.08
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.35
Consensus pattern (110 bp):
TTTTGACCCACTTCTCTGTACCTCACCAGGAAGATGGGATTTGAAGTTTCACTCCACTCCACTGT
AACCTCAAGGACGTTGAGCTCCACTTCATTATTTCGATCATATCA
Found at i:37387481 original size:220 final size:224
Alignment explanation
Indices: 37387092--37387623 Score: 662
Period size: 220 Copynumber: 2.4 Consensus size: 224
37387082 ACACTTCATT
* * * *
37387092 TTTTGACCCACTTCTTTGTATCTCACCAGGAATATGGGATTTTGAAGTTTCACTCCACCCCACTG
1 TTTTGACCCACTTCTTTGTACCTCACCAGGAAAATGGGA-TTTGAAGTTTCACTCCACTCTACTG
* * *** * *
37387157 TATCCTCAGGGATGTTGATCTCGGTTTCATTGTTTTGATTCAATACACTGTTTGCACCCACTTCT
65 TATCCTTAGGGATGTTGAGCTCCACTTCATTATTTCGATTCAATACACTGTTTGCACCCACTTCT
* *
37387222 CTATACCTCACTAGGAAGATAGGATTTGAAGTCTCACTCCACTCCACTATAACCTCAAGGACGTT
130 CTATACCTCACCAGGAAGATAGGATTCGAAGTCTCACTCCACTCCACTATAACCTCAAGGACGTT
** * * *
37387287 GAGCTCTGCTTCATTGTTTCGATCATGCCA
195 GAGCTCCACTTCATTATTTCAATCATACCA
* * * *
37387317 TTTTGACCCACATCTTTGTACCTTACCAAGAAAATAGG-TTTCGAAGTTTCACTCCACTCTACTG
1 TTTTGACCCACTTCTTTGTACCTCACCAGGAAAATGGGATTT-GAAGTTTCACTCCACTCTACTG
*
37387381 TAACCTTAGGGATGTTGAGCTCCACTTCATTATTTCGA-TC-ATATCA-T-TTTG-ACCCACTTC
65 TATCCTTAGGGATGTTGAGCTCCACTTCATTATTTCGATTCAATA-CACTGTTTGCACCCACTTC
* * * * *
37387441 TCTATACCTTACCAGGAAGATGGGATTCGAAGTTTCACTCCACTCCACTGTATCCTCAAGGACGT
129 TCTATACCTCACCAGGAAGATAGGATTCGAAGTCTCACTCCACTCCACTATAACCTCAAGGACGT
* *
37387506 TGAGCTCCACTTCATTATTTCAATCATATCG
194 TGAGCTCCACTTCATTATTTCAATCATACCA
* * * * *
37387537 TTTTGACCTAGTTCTCTGTACCTCACCAGGAAGATGGGATTTGATGTTTCACTCCACTCTACTGT
1 TTTTGACCCACTTCTTTGTACCTCACCAGGAAAATGGGATTTGAAGTTTCACTCCACTCTACTGT
*
37387602 ATCCTTAGGAATGTTTGAGCTC
66 ATCCTTAGGGATG-TTGAGCTC
37387624 TTCTTTGTTT
Statistics
Matches: 262, Mismatches: 41, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
220 154 0.59
221 15 0.06
222 4 0.02
223 7 0.03
224 50 0.19
225 32 0.12
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (224 bp):
TTTTGACCCACTTCTTTGTACCTCACCAGGAAAATGGGATTTGAAGTTTCACTCCACTCTACTGT
ATCCTTAGGGATGTTGAGCTCCACTTCATTATTTCGATTCAATACACTGTTTGCACCCACTTCTC
TATACCTCACCAGGAAGATAGGATTCGAAGTCTCACTCCACTCCACTATAACCTCAAGGACGTTG
AGCTCCACTTCATTATTTCAATCATACCA
Found at i:37394596 original size:10 final size:10
Alignment explanation
Indices: 37394581--37394606 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
37394571 CTCAGCTCTC
37394581 TTCTTCCCTT
1 TTCTTCCCTT
37394591 TTCTTCCCTT
1 TTCTTCCCTT
37394601 TTCTTC
1 TTCTTC
37394607 AACTTTCTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (10 bp):
TTCTTCCCTT
Found at i:37397289 original size:4 final size:4
Alignment explanation
Indices: 37397272--37397374 Score: 152
Period size: 4 Copynumber: 25.8 Consensus size: 4
37397262 TCAAAAAAAA
* *
37397272 ATAT ACAT ACAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
* * * *
37397320 ATAT ATAT ATAT GTAT GTAT ATAT ATAT ATAT ATGT ATGT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
37397368 ATAT ATA
1 ATAT ATA
37397375 CGTTTTAAAG
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 93 1.00
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.48
Consensus pattern (4 bp):
ATAT
Found at i:37397298 original size:22 final size:22
Alignment explanation
Indices: 37397272--37397374 Score: 152
Period size: 22 Copynumber: 4.7 Consensus size: 22
37397262 TCAAAAAAAA
* *
37397272 ATATACATACATATATATATAT
1 ATATATATATATATATATATAT
37397294 ATATATATATATATATATATAT
1 ATATATATATATATATATATAT
* *
37397316 ATATATATATATATATGTATGT
1 ATATATATATATATATATATAT
* *
37397338 ATATATATATATATATGTATGT
1 ATATATATATATATATATATAT
37397360 ATATATATATATATA
1 ATATATATATATATA
37397375 CGTTTTAAAG
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 77 1.00
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.48
Consensus pattern (22 bp):
ATATATATATATATATATATAT
Found at i:37397303 original size:18 final size:18
Alignment explanation
Indices: 37397272--37397374 Score: 152
Period size: 18 Copynumber: 5.7 Consensus size: 18
37397262 TCAAAAAAAA
* *
37397272 ATATACATACATATATAT
1 ATATATATATATATATAT
37397290 ATATATATATATATATAT
1 ATATATATATATATATAT
37397308 ATATATATATATATATAT
1 ATATATATATATATATAT
* *
37397326 ATATATGTATGTATATAT
1 ATATATATATATATATAT
* *
37397344 ATATATATATGTATGTAT
1 ATATATATATATATATAT
37397362 ATATATATATATA
1 ATATATATATATA
37397375 CGTTTTAAAG
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 78 1.00
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.48
Consensus pattern (18 bp):
ATATATATATATATATAT
Found at i:37446602 original size:15 final size:15
Alignment explanation
Indices: 37446560--37446606 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
37446550 TGTACCAAAG
*
37446560 AGAAGCAAACAGAGACA
1 AGAAG-AAA-AGAAACA
*
37446577 A-AAGCAAAGAAACA
1 AGAAGAAAAGAAACA
37446591 AGAAGAAAAGAAACA
1 AGAAGAAAAGAAACA
37446606 A
1 A
37446607 AAATAATCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 7 0.27
15 15 0.58
16 3 0.12
17 1 0.04
ACGTcount: A:0.68, C:0.13, G:0.19, T:0.00
Consensus pattern (15 bp):
AGAAGAAAAGAAACA
Found at i:37459769 original size:110 final size:110
Alignment explanation
Indices: 37459564--37460050 Score: 598
Period size: 110 Copynumber: 4.4 Consensus size: 110
37459554 AACGAAGTAA
*
37459564 AGCTCAAACATCCCTGAGGATACAGTAGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTAAG
1 AGCTC-AACATCCCTGAGGATACAGTGGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTAAG
* * *
37459629 GTATAGAGAAGTGGGTCAAAACGATATGATCGAAACAATAAAGCGG
65 GTACAAAGAAGTGGGTCAAAACGATATGATCGAAACAATGAAGCGG
* *** * * *
37459675 AGCTTAATGCCCCTGAGGATATAGTGGAGTGGAGTGAAACTTCGAATCCCATCTTCCTGATAAGG
1 AGCTCAACATCCCTGAGGATACAGTGGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTAAGG
* * * *
37459740 TACAAAGAAGTGGGTGAAAATGATGTGATCGAAAAAATGAAGCGG
66 TACAAAGAAGTGGGTCAAAACGATATGATCGAAACAATGAAGCGG
* * * * *
37459785 AGCTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTGAGG
1 AGCTCAACATCCCTGAGGATACAGTGGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTAAGG
* * * *
37459850 TGCAAAGAAGTGGGTCAAAGCGACATGATCGAAACAATGAAGCAG
66 TACAAAGAAGTGGGTCAAAACGATATGATCGAAACAATGAAGCGG
* * * * *
37459895 AGCTCAACATCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATCTCATCTTCCTGGTGAGG
1 AGCTCAACATCCCTGAGGATACAGTGGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTAAGG
* * * *
37459960 TACAAAGAAGTAGGTGC-AAACAGTATGTTGAATCAAAACAATGAAGCCG
66 TACAAAGAAGTGGGT-CAAAAC-G-AT-ATG-ATCGAAACAATGAAGCGG
* *
37460009 AGCTCAACATCCCTGAGGATACAGTGGAGTAGAGTAAAACTT
1 AGCTCAACATCCCTGAGGATACAGTGGAGTGGAGTGAAACTT
37460051 TAAAATCCCA
Statistics
Matches: 322, Mismatches: 49, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
110 260 0.81
111 6 0.02
112 1 0.00
113 2 0.01
114 53 0.16
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (110 bp):
AGCTCAACATCCCTGAGGATACAGTGGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTAAGG
TACAAAGAAGTGGGTCAAAACGATATGATCGAAACAATGAAGCGG
Found at i:37459966 original size:220 final size:224
Alignment explanation
Indices: 37459564--37460093 Score: 660
Period size: 220 Copynumber: 2.4 Consensus size: 224
37459554 AACGAAGTAA
*
37459564 AGCTCAAACATCCCTGAGGATACAGTAGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTAAG
1 AGCTC-AACATCCCTGAGGATACAGTAGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTGAG
* * * * * **
37459629 GTATAGAGAAGTGGGTCAAAACGATATGATCGAAACAATAAAGCGGAGCTTAATGCCCCTGAGGA
65 GTACAAAGAAGTGGGTCAAAACGACATGATCGAAACAATAAAGCAGAGCTCAACACCCCTGAGGA
* * *
37459694 TATAGTGGAGTGGAGTGAAACTTCGAATCCCATCTTCCTGATAAGGTACAAAGAAGTGGGTG-AA
130 TACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGATAAGGTACAAAGAAGTAGGTGCAA
*
37459758 A-A-TGATG-TG-ATCGAAAA-AATGAAGCGG
195 ACAGT-ATGTTGAATC-AAAACAATGAAGCCG
* * *
37459785 AGCTCAACGTCCTTGAGGTTACAGTAGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTGAGG
1 AGCTCAACATCCCTGAGGATACAGTAGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTGAGG
* * * * * *
37459850 TGCAAAGAAGTGGGTCAAAGCGACATGATCGAAACAATGAAGCAGAGCTCAACATCCTTGAGGTT
66 TACAAAGAAGTGGGTCAAAACGACATGATCGAAACAATAAAGCAGAGCTCAACACCCCTGAGGAT
* * * *
37459915 ACAGTGGAGTGGAGTGAGACTTCAAATCTCATCTTCCTGGTGAGGTACAAAGAAGTAGGTGCAAA
131 ACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGATAAGGTACAAAGAAGTAGGTGCAAA
37459980 CAGTATGTTGAATCAAAACAATGAAGCCG
196 CAGTATGTTGAATCAAAACAATGAAGCCG
* * * ** * *
37460009 AGCTCAACATCCCTGAGGATACAGTGGAGTAGAGTAAAACTTTAAAATCCCATATTCCTGGTGAG
1 AGCTCAACATCCCTGAGGATACAGTAGAGTGGAGTGAAAC-TTCGAATCTCATCTTCCTGGTGAG
* *
37460074 ATA-AAGAGAAGTGGTTCAAA
65 GTACAA-AGAAGTGGGTCAAA
37460094 CAATGAAGTG
Statistics
Matches: 263, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
220 162 0.62
221 8 0.03
222 4 0.02
223 7 0.03
224 48 0.18
225 34 0.13
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.23
Consensus pattern (224 bp):
AGCTCAACATCCCTGAGGATACAGTAGAGTGGAGTGAAACTTCGAATCTCATCTTCCTGGTGAGG
TACAAAGAAGTGGGTCAAAACGACATGATCGAAACAATAAAGCAGAGCTCAACACCCCTGAGGAT
ACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGATAAGGTACAAAGAAGTAGGTGCAAA
CAGTATGTTGAATCAAAACAATGAAGCCG
Found at i:37460263 original size:124 final size:124
Alignment explanation
Indices: 37460040--37460271 Score: 326
Period size: 124 Copynumber: 1.9 Consensus size: 124
37460030 CAGTGGAGTA
* * * *
37460040 GAGTAAAACTTTAAAATCCCATATTCCTGGTGAGATAAAGAGAAGTGGTTCAAACAATGAAGTGT
1 GAGTAAAACTTTAAAATCCCATATTCCTGATGAGATAAAGAGAAGTGGGTCAAACAATGAAGCGA
*
37460105 TCATCTTCCTGATGAGATATAGAGAAGTGAACCAAAATAATGAGGTGAAGCTCAACCGT
66 TCATCTTCCTGATGAGATACAGAGAAGTGAACCAAAATAATGAGGTGAAGCTCAACCGT
* * * *
37460164 GAGTAAAACTTTGAAA-CCCTATCTTCCTGATGAGATACAGAGAAGTGGGTCAGACAATGAAGCG
1 GAGTAAAACTTTAAAATCCC-ATATTCCTGATGAGATAAAGAGAAGTGGGTCAAACAATGAAGCG
*
37460228 ATCATCTTCCT-AGTGAGATACAGAGAAGT-AGACCAAATTAATGA
65 ATCATCTTCCTGA-TGAGATACAGAGAAGTGA-ACCAAAATAATGA
37460272 AACAGAGCTT
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
123 5 0.05
124 90 0.95
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (124 bp):
GAGTAAAACTTTAAAATCCCATATTCCTGATGAGATAAAGAGAAGTGGGTCAAACAATGAAGCGA
TCATCTTCCTGATGAGATACAGAGAAGTGAACCAAAATAATGAGGTGAAGCTCAACCGT
Found at i:37461141 original size:15 final size:15
Alignment explanation
Indices: 37461123--37461153 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37461113 TTTATATAAT
*
37461123 ATTTTGAAATAAATA
1 ATTTTAAAATAAATA
37461138 ATTTTAAAATAAATA
1 ATTTTAAAATAAATA
37461153 A
1 A
37461154 AATGCAGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (15 bp):
ATTTTAAAATAAATA
Found at i:37472824 original size:12 final size:12
Alignment explanation
Indices: 37472803--37472833 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
37472793 CTTTAAACTG
*
37472803 TATATATATATA
1 TATATGTATATA
37472815 TATATGTATATA
1 TATATGTATATA
37472827 TATATGT
1 TATATGT
37472834 TTTTTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (12 bp):
TATATGTATATA
Found at i:37502728 original size:208 final size:209
Alignment explanation
Indices: 37502248--37504952 Score: 3595
Period size: 208 Copynumber: 13.0 Consensus size: 209
37502238 TCGATTTGTC
* * * * * *
37502248 GTTTTGACCC-TTTTTTCTGTATCTAATCAGGAAGATGGGGTTTGAAGTTTCACTTACATTTAGT
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
* ** * * * *
37502312 TTCACTTTATTTATTTGATCTACTTCTCAGTATCTTATCAGGAAGATGACGGCCTCTTTGTTTTA
66 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
* * * *
37502377 ATCCACTTCTCAGTATCTCATCAGGAAGATGGATTTGTACAA---CTCTGTATCTCATTAGGAAG
131 ATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGACAACTTCTCTGTATCTCATCAGGAAG
* * *
37502439 ATAACTTTTTTATT
196 ATGACCTCTTTATT
** * *
37502453 ACTTTGACCCAC-TTCTCTGTATCTCATCAGGATGATGGGGTTTGAAGTTTCACTTACATTGAGC
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
* * *
37502517 TTCACTTCATCGATTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGACCGTCTCATTATTTTA
66 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
* * * * *
37502582 ATCCACTTCTCTGTATCTCATCAGGAAGACAGATTTGGAAAACTTCTTTATATCTCATCAGAAAG
131 ATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGACAACTTCTCTGTATCTCATCAGGAAG
37502647 ATGACCTCTTTATT
196 ATGACCTCTTTATT
* * *
37502661 GTTTTGACCCACTTTC-CTGTATCTCATCAGAAAGATGGGGTTTGAAGTCTCAATCACATTGAGC
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
* * * * *
37502725 TTCACTTCATCGATTTGGTCTACTCCTCAGTATCTCATCAGGAAAATGACCACTTCTTTGTTTTA
66 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
* * *
37502790 ATCCACTTCTCTGTATCTCATTAGGAAGACGGATTTGGACAACTTCTCTGTATCTCATTAGGAAC
131 ATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGACAACTTCTCTGTATCTCATCAGGAAG
37502855 ATGACCTCTTTATT
196 ATGACCTCTTTATT
* * *
37502869 -TTTTGACCCAC-TTCTCTGTATCTCATCAGAAAGATGGGGTTTGAAGTCTCACTCACATTAAGC
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
* * *
37502932 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATTAGGAAGATGACTGCCTCATTATTTTA
66 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
* *
37502997 ATCCACTTCTCTGTATCTCATCAAGAAGACGGATTTTGGACAACTTCTTTGTATCTCATCAGGAA
131 ATCCACTTCTCTGTATCTCATCAGGAAGACGGA-TTTGGACAACTTCTCTGTATCTCATCAGGAA
37503062 TG-TGACCTCTTTATT
195 -GATGACCTCTTTATT
* * * * * *
37503077 GTTTTGACCCACTTT-TTTATATGTCAACAGGAAGATGGGGTTTGAAGTTTCACTTACATTAAGC
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
** * * **
37503141 TTTGCTTTATCGATTTGGTCTACTTCTCAGTATCTTATCAGGAAGATGACCGCCTTTTTGTTTTA
66 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
* * * * *
37503206 ATCCACTTCTCAGTATCTCATCAGGAAGATGGATTTGTACAACTTCTATGTATCTCATTAGGAAG
131 ATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGACAACTTCTCTGTATCTCATCAGGAAG
37503271 ATGACCTCTTTATT
196 ATGACCTCTTTATT
* *
37503285 GCTTTGACCCAC-TTCTCTGTATCTCATCAGGATGATGGGGTTTGAAGTTTCACTCACATTGAGC
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
* * *
37503349 TTCACTTCATCGATTTGGTCCACTTCTCAGTATCTCATAAGGAAGATAACCGCCTCATTGTTTTA
66 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
* * * * * * *
37503414 ACCCACTTCTTTGTATCTCATCAAGAAGATGGATTTGGATAACTTCTCTGTATATCATCAAGAAG
131 ATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGACAACTTCTCTGTATCTCATCAGGAAG
37503479 ATGACCTCTTTATT
196 ATGACCTCTTTATT
* * * *
37503493 GTTTTGACCCACTTT-TTTGTATCTCATCAAGAAGATAGGGTTTGAAGTCTCACTCACATTGAGC
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
* * *
37503557 TTCACTTCATCGATTTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCACCTCATTATTTTA
66 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
* * * * * *
37503622 ATCCACTTCTTTGTATCTCATCAGGAAGATGAATTTTAGACAACTTCTCTGTATCTTATCAAGAA
131 ATCCACTTCTCTGTATCTCATCAGGAAGACGGA-TTTGGACAACTTCTCTGTATCTCATCAGGAA
*
37503687 TATGACCTCTTTATT
195 GATGACCTCTTTATT
* * **
37503702 GTTTTGATCCAC-TTCTCTATATCTCATCAAAAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
** * *
37503766 TTTGCTTCATCGATTTGGTCTACTTCTCAATATCTCATCAGGAAGATGACCGCCTCTTTGTTTTA
66 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
* * * *
37503831 ATCCACTTCT-TAGTATCTCATCAGGAAGATGGATTTGTACAACTTCTCTATATCTCATTAGGAA
131 ATCCACTTCTCT-GTATCTCATCAGGAAGACGGATTTGGACAACTTCTCTGTATCTCATCAGGAA
37503895 GATGACCTCTTTATT
195 GATGACCTCTTTATT
* *
37503910 -TCTTTGACCCAC-TTCTCTATATCTCATCAGGAAGATGAGGTTTGAAGTTTCACTCACATTGAG
1 GT-TTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAG
*
37503973 CTTCACTTCATCGATTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTT
65 CTTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTT
* * *
37504038 AATCCACTTCTTTGTATCTCATCAAGAAGACGGATTTGGACAACTTCTTTGTATCTCATCAGGAA
130 AATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGACAACTTCTCTGTATCTCATCAGGAA
37504103 GATGACCTCTTTATT
195 GATGACCTCTTTATT
* * * * *
37504118 ATTTTGACCCACTTT-TTTGTATCTCATCAAGAAGATAGGGTTTGAAGTCTCACTCACATTGAGC
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
* * *
37504182 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATAACCACCTCATTGTTTTA
66 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
* *
37504247 ATCCACTTCTCTGTATCTCATCAAGAAGACGGATTTTGGACAACTTCTCTATATCTCATCAGGAA
131 ATCCACTTCTCTGTATCTCATCAGGAAGACGGA-TTTGGACAACTTCTCTGTATCTCATCAGGAA
*
37504312 TATGACCTCTTTATT
195 GATGACCTCTTTATT
* * * * *
37504327 GTTTTGACCCAC-TTATCTATATCTCATCAGAAAGATGGGGTTTGAAGTTTTACTCACATTGGGC
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
** ** * * * *
37504391 TTTGCTTCATTAATTTGGTCTACTTCTCAGTATCTCATTAGGAAGATGACTGCCTCTTTATTTTA
66 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
* * *
37504456 ATCCACTTCT-TAGTATCTCATCAGGAAGATGGATTCGGACAACTTCTTTGTATCTCATCAGGAA
131 ATCCACTTCTCT-GTATCTCATCAGGAAGACGGATTTGGACAACTTCTCTGTATCTCATCAGGAA
* *
37504520 TATTACCTCTTTATT
195 GATGACCTCTTTATT
* * * *
37504535 ATTTTGACTCAC-TTCTTTGTATCTCATTAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
* * *
37504599 TTCACTTCATCGATTTGATCTACTTCTCAGTATCTCATCAGGAATATGACCGCCTCATTTTTTTA
66 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
* *
37504664 ATCCACTTCTCTGTATCTCATAAGGAAGACGGATTTTGGACAACTTCTTTGTATCTCATCAGGAA
131 ATCCACTTCTCTGTATCTCATCAGGAAGACGGA-TTTGGACAACTTCTCTGTATCTCATCAGGAA
*
37504729 GATGACTTCTTTATT
195 GATGACCTCTTTATT
* * * * * *
37504744 CTTTTGACCCA-TTTCTCTGTATCTTATCAGGAAGATGGGTTTTGAAGTTTAATTCAAATTGAGC
1 GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
* * * * * *
37504808 TGT-GCTTCAAT-GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGATCGCTTCTTTGATT
66 T-TCACTTC-ATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTT
* * * ** * * *
37504871 TAATCCACTTCTCTTTATGTCATGAATAAGACGGATTTGGTTC-ACTTCTCTGCATCTCATCAAG
129 TAATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGG-ACAACTTCTCTGTATCTCATCAGG
*
37504935 AAGATGACCACTTTATT
193 AAGATGACCTCTTTATT
37504952 G
1 G
37504953 CTTCGGATGA
Statistics
Matches: 2203, Mismatches: 268, Indels: 55
0.87 0.11 0.02
Matches are distributed among these distances:
205 147 0.07
206 3 0.00
207 149 0.07
208 1212 0.55
209 687 0.31
210 5 0.00
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (209 bp):
GTTTTGACCCACTTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGC
TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTA
ATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGACAACTTCTCTGTATCTCATCAGGAAG
ATGACCTCTTTATT
Found at i:37503297 original size:85 final size:85
Alignment explanation
Indices: 37503162--37503322 Score: 218
Period size: 85 Copynumber: 1.9 Consensus size: 85
37503152 GATTTGGTCT
* * *
37503162 ACTTCTCAGTATCTTATCAGGAAGATGACCGCCTTTTTGTTTTAATCCACTTCTCAGTATCTCAT
1 ACTTCTCAGTATCTCATCAGGAAGATGACCGCCTTTTTGCTTTAACCCACTTCTCAGTATCTCAT
37503227 CAGGAAGATGGATTTGTACA
66 CAGGAAGATGGATTTGTACA
* * * *
37503247 ACTTCT-ATGTATCTCATTAGGAAGATGACC-TCTTTATTGCTTTGACCCACTTCTCTGTATCTC
1 ACTTCTCA-GTATCTCATCAGGAAGATGACCGCCTTT-TTGCTTTAACCCACTTCTCAGTATCTC
*
37503310 ATCAGGATGATGG
64 ATCAGGAAGATGG
37503323 GGTTTGAAGT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
84 5 0.08
85 61 0.92
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (85 bp):
ACTTCTCAGTATCTCATCAGGAAGATGACCGCCTTTTTGCTTTAACCCACTTCTCAGTATCTCAT
CAGGAAGATGGATTTGTACA
Found at i:37503503 original size:85 final size:85
Alignment explanation
Indices: 37503370--37503528 Score: 230
Period size: 85 Copynumber: 1.9 Consensus size: 85
37503360 GATTTGGTCC
*
37503370 ACTTCTCAGTATCTCATAAGGAAGATAACCGCCTCATTGTTTTAACCCACTTCTTTGTATCTCAT
1 ACTTCTCAGTATATCATAAGGAAGATAACCGCCTCATTGTTTTAACCCACTTCTTTGTATCTCAT
37503435 CAAGAAGATGGATTTGGATA
66 CAAGAAGATGGATTTGGATA
* * * * * * *
37503455 ACTTCTCTGTATATCATCAA-GAAGATGACCTCTTTATTGTTTTGACCCACTTTTTTGTATCTCA
1 ACTTCTCAGTATATCAT-AAGGAAGATAACCGCCTCATTGTTTTAACCCACTTCTTTGTATCTCA
37503519 TCAAGAAGAT
65 TCAAGAAGAT
37503529 AGGGTTTGAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
85 63 0.97
86 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (85 bp):
ACTTCTCAGTATATCATAAGGAAGATAACCGCCTCATTGTTTTAACCCACTTCTTTGTATCTCAT
CAAGAAGATGGATTTGGATA
Found at i:37503667 original size:417 final size:417
Alignment explanation
Indices: 37502210--37504951 Score: 3689
Period size: 417 Copynumber: 6.6 Consensus size: 417
37502200 ATCTTGGTTC
* * ** * * ** *
37502210 ACTTCTCTATATTTCATCAAGG-AGATGATCGATTTGTCGTTTTGACCCTTTTTTCTGTATCTAA
1 ACTTCTCTATATCTCATC-AGGAAGATGACCTCTTTATTGTTTTGACCCACTTTTCTGTATCTCA
* * * * ** *
37502274 TCAGGAAGATGGGGTTTGAAGTTTCACTTACATTTAGTTTCACTTTATTTATTTGATCTACTTCT
65 TCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCTACTTCT
* *
37502339 CAGTATCTTATCAGGAAGATGACGGCCTCTTTGTTTTAATCCACTTCTCAGTATCTCATCAGGAA
130 CAGTATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAATCCACTTCTCAGTATCTCATCAGGAA
* * * * * *
37502404 GATGGATTTGTACAA---CTCTGTATCTCATTAGGAAGATAACTTTTTTATTACTTTGACCCACT
195 GATGGATTTGGACAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTATTTTGACCCACT
* *
37502466 TCTCTGTATCTCATCAGGATGATGGGGTTTGAAGTTTCACTTACATTGAGCTTCACTTCATCGAT
260 TCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGAT
* * *
37502531 TTGGTCCACTTCTCAGTATCTCATCAGGAAGATGACCGTCTCATTATTTTAATCCACTTCTCTGT
325 TTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTGT
* * *
37502596 ATCTCATCAGGAAGACAGA-TTTGGAAA
390 ATCTCATCAAGAAGACGGATTTTGGACA
* * *
37502623 ACTTCTTTATATCTCATCAGAAAGATGACCTCTTTATTGTTTTGACCCACTTTCCTGTATCTCAT
1 ACTTCTCTATATCTCATCAGGAAGATGACCTCTTTATTGTTTTGACCCACTTTTCTGTATCTCAT
* * * *
37502688 CAGAAAGATGGGGTTTGAAGTCTCAATCACATTGAGCTTCACTTCATCGATTTGGTCTACTCCTC
66 CAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCTACTTCTC
* * * * *
37502753 AGTATCTCATCAGGAAAATGACCACTTCTTTGTTTTAATCCACTTCTCTGTATCTCATTAGGAAG
131 AGTATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAATCCACTTCTCAGTATCTCATCAGGAAG
* * *
37502818 ACGGATTTGGACAACTTCTCTGTATCTCATTAGGAACATGACCTCTTTATT-TTTTGACCCACTT
196 ATGGATTTGGACAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTATTTTGACCCACTT
* * *
37502882 CTCTGTATCTCATCAGAAAGATGGGGTTTGAAGTCTCACTCACATTAAGCTTCACTTCATCGATT
261 CTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATT
* * *
37502947 TGGTCTACTTCTCAGTATCTCATTAGGAAGATGACTGCCTCATTATTTTAATCCACTTCTCTGTA
326 TGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTGTA
37503012 TCTCATCAAGAAGACGGATTTTGGACA
391 TCTCATCAAGAAGACGGATTTTGGACA
* * * * *
37503039 ACTTCTTTGTATCTCATCAGGAATG-TGACCTCTTTATTGTTTTGACCCACTTTTTTATATGTCA
1 ACTTCTCTATATCTCATCAGGAA-GATGACCTCTTTATTGTTTTGACCCACTTTTCTGTATCTCA
* * * ** *
37503103 ACAGGAAGATGGGGTTTGAAGTTTCACTTACATTAAGCTTTGCTTTATCGATTTGGTCTACTTCT
65 TCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCTACTTCT
* *
37503168 CAGTATCTTATCAGGAAGATGACCGCCTTTTTGTTTTAATCCACTTCTCAGTATCTCATCAGGAA
130 CAGTATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAATCCACTTCTCAGTATCTCATCAGGAA
* * * **
37503233 GATGGATTTGTACAACTTCTATGTATCTCATTAGGAAGATGACCTCTTTATTGCTTTGACCCACT
195 GATGGATTTGGACAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTATTTTGACCCACT
*
37503298 TCTCTGTATCTCATCAGGATGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGAT
260 TCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGAT
* * * * *
37503363 TTGGTCCACTTCTCAGTATCTCATAAGGAAGATAACCGCCTCATTGTTTTAACCCACTTCTTTGT
325 TTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTGT
* *
37503428 ATCTCATCAAGAAGATGGA-TTTGGATA
390 ATCTCATCAAGAAGACGGATTTTGGACA
* * * *
37503455 ACTTCTCTGTATATCATCAAGAAGATGACCTCTTTATTGTTTTGACCCACTTTTTTGTATCTCAT
1 ACTTCTCTATATCTCATCAGGAAGATGACCTCTTTATTGTTTTGACCCACTTTTCTGTATCTCAT
* * * *
37503520 CAAGAAGATAGGGTTTGAAGTCTCACTCACATTGAGCTTCACTTCATCGATTTGGTCTACTTCTT
66 CAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCTACTTCTC
* * * **
37503585 AGTATCTCATCAGGAAGATGACCACCTCATTATTTTAATCCACTTCTTTGTATCTCATCAGGAAG
131 AGTATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAATCCACTTCTCAGTATCTCATCAGGAAG
* * * * * * *
37503650 ATGAATTTTAGACAACTTCTCTGTATCTTATCAAGAATATGACCTCTTTATTGTTTTGATCCACT
196 ATGGA-TTTGGACAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTATTTTGACCCACT
* ** **
37503715 TCTCTATATCTCATCAAAAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATCGAT
260 TCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGAT
* *
37503780 TTGGTCTACTTCTCAATATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAATCCACTTCT-TAG
325 TTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCT-G
* * *
37503844 TATCTCATCAGGAAGATGGA-TTTGTACA
389 TATCTCATCAAGAAGACGGATTTTGGACA
* * *
37503872 ACTTCTCTATATCTCATTAGGAAGATGACCTCTTTATT-TCTTTGACCCACTTCTCTATATCTCA
1 ACTTCTCTATATCTCATCAGGAAGATGACCTCTTTATTGT-TTTGACCCACTTTTCTGTATCTCA
* *
37503936 TCAGGAAGATGAGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCCACTTCT
65 TCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCTACTTCT
* ** *
37504001 CAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTTTGTATCTCATCAAGAA
130 CAGTATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAATCCACTTCTCAGTATCTCATCAGGAA
* *
37504066 GACGGATTTGGACAACTTCTTTGTATCTCATCAGGAAGATGACCTCTTTATTATTTTGACCCACT
195 GATGGATTTGGACAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTATTTTGACCCACT
* * * * *
37504131 TTTTTGTATCTCATCAAGAAGATAGGGTTTGAAGTCTCACTCACATTGAGCTTCACTTCATCGAT
260 TCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGAT
* * *
37504196 TTGGTCTACTTCTCAGTATCTCATCAAGAAGATAACCACCTCATTGTTTTAATCCACTTCTCTGT
325 TTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTGT
37504261 ATCTCATCAAGAAGACGGATTTTGGACA
390 ATCTCATCAAGAAGACGGATTTTGGACA
* * *
37504289 ACTTCTCTATATCTCATCAGGAATATGACCTCTTTATTGTTTTGACCCACTTATCTATATCTCAT
1 ACTTCTCTATATCTCATCAGGAAGATGACCTCTTTATTGTTTTGACCCACTTTTCTGTATCTCAT
* * * ** **
37504354 CAGAAAGATGGGGTTTGAAGTTTTACTCACATTGGGCTTTGCTTCATTAATTTGGTCTACTTCTC
66 CAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCTACTTCTC
* * * *
37504419 AGTATCTCATTAGGAAGATGACTGCCTCTTTATTTTAATCCACTTCTTAGTATCTCATCAGGAAG
131 AGTATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAATCCACTTCTCAGTATCTCATCAGGAAG
* * * * *
37504484 ATGGATTCGGACAACTTCTTTGTATCTCATCAGGAATATTACCTCTTTATTATTTTGACTCACTT
196 ATGGATTTGGACAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTATTTTGACCCACTT
* *
37504549 CTTTGTATCTCATTAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATT
261 CTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATT
* * *
37504614 TGATCTACTTCTCAGTATCTCATCAGGAATATGACCGCCTCATTTTTTTAATCCACTTCTCTGTA
326 TGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTGTA
37504679 TCTCAT-AAGGAAGACGGATTTTGGACA
391 TCTCATCAA-GAAGACGGATTTTGGACA
* * * * *
37504706 ACTTCTTTGTATCTCATCAGGAAGATGACTTCTTTATTCTTTTGACCCA-TTTCTCTGTATCTTA
1 ACTTCTCTATATCTCATCAGGAAGATGACCTCTTTATTGTTTTGACCCACTTT-TCTGTATCTCA
* * * * *
37504770 TCAGGAAGATGGGTTTTGAAGTTTAATTCAAATTGAGCTGT-GCTTCAAT-GATTTGGTCTACTT
65 TCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCT-TCACTTC-ATCGATTTGGTCTACTT
* * * * ** * * **
37504833 CTCTGTATCTCATCAGGAAGATGATCGCTTCTTTGATTTAATCCACTTCTCTTTATGTCATGAAT
128 CTCAGTATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAATCCACTTCTCAGTATCTCATCAGG
* * * * *
37504898 AAGACGGATTTGGTTC-ACTTCTCTGCATCTCATCAAGAAGATGACCACTTTATT
193 AAGATGGATTTGG-ACAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATT
37504952 GCTTCGGATG
Statistics
Matches: 2060, Mismatches: 250, Indels: 34
0.88 0.11 0.01
Matches are distributed among these distances:
412 2 0.00
413 174 0.08
415 150 0.07
416 626 0.30
417 1103 0.54
418 5 0.00
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (417 bp):
ACTTCTCTATATCTCATCAGGAAGATGACCTCTTTATTGTTTTGACCCACTTTTCTGTATCTCAT
CAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCTACTTCTC
AGTATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAATCCACTTCTCAGTATCTCATCAGGAAG
ATGGATTTGGACAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTATTTTGACCCACTT
CTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATT
TGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTGTA
TCTCATCAAGAAGACGGATTTTGGACA
Found at i:37503808 original size:625 final size:625
Alignment explanation
Indices: 37502248--37504952 Score: 3759
Period size: 625 Copynumber: 4.3 Consensus size: 625
37502238 TCGATTTGTC
* * * * * * * *
37502248 GTTTTGACCC-TTTTTTCTGTATCTAATCAGGAAGATGGGGTTTGAAGTTTCACTTACATTTAGT
1 GTTTTGACCCACTTTTT-TGTATCTCATCAAGAAGATAGGGTTTGAAGTCTCACTCACATTGAGC
* ** * * * * *
37502312 TTCACTTTATTTATTTGATCTACTTCTCAGTATCTTATCAGGAAGATGACGGCCTCTTTGTTTTA
65 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTATTTTA
* * * * *
37502377 ATCCACTTCTCAGTATCTCATCAGGAAGATGGA-TTTGTACAA---CTCTGTATCTCATTAGGAA
130 ATCCACTTCTCTGTATCTCATCAAGAAGACGGATTTTGGACAACTTCTCTGTATCTCATCAGGAA
* * * * ** * * *
37502438 GATAACTTTTTTATTACTTTGACCCACTTCTCTGTATCTCATCAGGATGATGGGGTTTGAAGTTT
195 TATGACCTCTTTATTGTTTTGACCCACTTCTCTATATCTCATCAGAAAGATGGGGTTTGAAGTTT
* ** *
37502503 CACTTACATTGAGCTTCACTTCATCGATTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGACC
260 CACTCACATTGAGCTTTGCTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACC
* * * ** *
37502568 GTCTCATTATTTTAATCCACTTCTCTGTATCTCATCAGGAAGACAGATTTGGAAAACTTCTTTAT
325 GCCTCTTTATTTTAATCCACTTCTCAGTATCTCATCAGGAAGATGGATTTGGACAACTTCTTTAT
* * *
37502633 ATCTCATCAGAAAGATGACCTCTTTATTGTTTTGACCCACTT-TCCTGTATCTCATCAGAAAGAT
390 ATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCT-CTGTATCTCATCAGGAAGAT
* * * *
37502697 GGGGTTTGAAGTCTCAATCACATTGAGCTTCACTTCATCGATTTGGTCTACTCCTCAGTATCTCA
454 GGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCCACTTCTCAGTATCTCA
* * * * * *
37502762 TCAGGAAAATGACCACTTCTTTGTTTTAATCCACTTCTCTGTATCTCATTAGGAAGACGGATTTG
519 TCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTGTATCTCATCAAGAAGACGGATTTG
* *
37502827 GACAACTTCTCTGTATCTCATTAGGAACATGACCTCTTTATT
584 GACAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATT
* * * *
37502869 -TTTTGACCCACTTCTCTGTATCTCATC-AGAAAGATGGGGTTTGAAGTCTCACTCACATTAAGC
1 GTTTTGACCCACTTTTTTGTATCTCATCAAG-AAGATAGGGTTTGAAGTCTCACTCACATTGAGC
* *
37502932 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATTAGGAAGATGACTGCCTCATTATTTTA
65 TTCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTATTTTA
*
37502997 ATCCACTTCTCTGTATCTCATCAAGAAGACGGATTTTGGACAACTTCTTTGTATCTCATCAGGAA
130 ATCCACTTCTCTGTATCTCATCAAGAAGACGGATTTTGGACAACTTCTCTGTATCTCATCAGGAA
* * * * * *
37503062 TGTGACCTCTTTATTGTTTTGACCCACTTTTTTATATGTCAACAGGAAGATGGGGTTTGAAGTTT
195 TATGACCTCTTTATTGTTTTGACCCACTTCTCTATATCTCATCAGAAAGATGGGGTTTGAAGTTT
* * * *
37503127 CACTTACATTAAGCTTTGCTTTATCGATTTGGTCTACTTCTCAGTATCTTATCAGGAAGATGACC
260 CACTCACATTGAGCTTTGCTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACC
* * * * *
37503192 GCCTTTTTGTTTTAATCCACTTCTCAGTATCTCATCAGGAAGATGGATTTGTACAACTTCTATGT
325 GCCTCTTTATTTTAATCCACTTCTCAGTATCTCATCAGGAAGATGGATTTGGACAACTTCTTTAT
* *
37503257 ATCTCATTAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAGGATGATG
390 ATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAGGAAGATG
37503322 GGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCCACTTCTCAGTATCTCAT
455 GGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCCACTTCTCAGTATCTCAT
* * * * *
37503387 AAGGAAGATAACCGCCTCATTGTTTTAACCCACTTCTTTGTATCTCATCAAGAAGATGGATTTGG
520 CAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTGTATCTCATCAAGAAGACGGATTTGG
* * *
37503452 ATAACTTCTCTGTATATCATCAAGAAGATGACCTCTTTATT
585 ACAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATT
37503493 GTTTTGACCCACTTTTTTGTATCTCATCAAGAAGATAGGGTTTGAAGTCTCACTCACATTGAGCT
1 GTTTTGACCCACTTTTTTGTATCTCATCAAGAAGATAGGGTTTGAAGTCTCACTCACATTGAGCT
* *
37503558 TCACTTCATCGATTTGGTCTACTTCTTAGTATCTCATCAGGAAGATGACCACCTCATTATTTTAA
66 TCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTATTTTAA
* * * * * * *
37503623 TCCACTTCTTTGTATCTCATCAGGAAGATGAATTTTAGACAACTTCTCTGTATCTTATCAAGAAT
131 TCCACTTCTCTGTATCTCATCAAGAAGACGGATTTTGGACAACTTCTCTGTATCTCATCAGGAAT
* *
37503688 ATGACCTCTTTATTGTTTTGATCCACTTCTCTATATCTCATCAAAAAGATGGGGTTTGAAGTTTC
196 ATGACCTCTTTATTGTTTTGACCCACTTCTCTATATCTCATCAGAAAGATGGGGTTTGAAGTTTC
*
37503753 ACTCACATTGAGCTTTGCTTCATCGATTTGGTCTACTTCTCAATATCTCATCAGGAAGATGACCG
261 ACTCACATTGAGCTTTGCTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCG
* * * *
37503818 CCTCTTTGTTTTAATCCACTTCTTAGTATCTCATCAGGAAGATGGATTTGTACAACTTCTCTATA
326 CCTCTTTATTTTAATCCACTTCTCAGTATCTCATCAGGAAGATGGATTTGGACAACTTCTTTATA
* * * *
37503883 TCTCATTAGGAAGATGACCTCTTTATTTCTTTGACCCACTTCTCTATATCTCATCAGGAAGATGA
391 TCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGG
37503948 GGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCCACTTCTCAGTATCTCATC
456 GGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCCACTTCTCAGTATCTCATC
*
37504013 AGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTTTGTATCTCATCAAGAAGACGGATTTGGA
521 AGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTGTATCTCATCAAGAAGACGGATTTGGA
*
37504078 CAACTTCTTTGTATCTCATCAGGAAGATGACCTCTTTATT
586 CAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATT
*
37504118 ATTTTGACCCACTTTTTTGTATCTCATCAAGAAGATAGGGTTTGAAGTCTCACTCACATTGAGCT
1 GTTTTGACCCACTTTTTTGTATCTCATCAAGAAGATAGGGTTTGAAGTCTCACTCACATTGAGCT
* * * *
37504183 TCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATAACCACCTCATTGTTTTAA
66 TCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTATTTTAA
*
37504248 TCCACTTCTCTGTATCTCATCAAGAAGACGGATTTTGGACAACTTCTCTATATCTCATCAGGAAT
131 TCCACTTCTCTGTATCTCATCAAGAAGACGGATTTTGGACAACTTCTCTGTATCTCATCAGGAAT
* *
37504313 ATGACCTCTTTATTGTTTTGACCCACTTATCTATATCTCATCAGAAAGATGGGGTTTGAAGTTTT
196 ATGACCTCTTTATTGTTTTGACCCACTTCTCTATATCTCATCAGAAAGATGGGGTTTGAAGTTTC
* ** * *
37504378 ACTCACATTGGGCTTTGCTTCATTAATTTGGTCTACTTCTCAGTATCTCATTAGGAAGATGACTG
261 ACTCACATTGAGCTTTGCTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCG
* * *
37504443 CCTCTTTATTTTAATCCACTTCTTAGTATCTCATCAGGAAGATGGATTCGGACAACTTCTTTGTA
326 CCTCTTTATTTTAATCCACTTCTCAGTATCTCATCAGGAAGATGGATTTGGACAACTTCTTTATA
* * ** * * *
37504508 TCTCATCAGGAATATTACCTCTTTATTATTTTGACTCACTTCTTTGTATCTCATTAGGAAGATGG
391 TCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGG
* *
37504573 GGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGATCTACTTCTCAGTATCTCATC
456 GGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCCACTTCTCAGTATCTCATC
* *
37504638 AGGAATATGACCGCCTCATTTTTTTAATCCACTTCTCTGTATCTCAT-AAGGAAGACGGATTTTG
521 AGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTGTATCTCATCAA-GAAGACGGA-TTTG
* *
37504702 GACAACTTCTTTGTATCTCATCAGGAAGATGACTTCTTTATT
584 GACAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATT
* * * * * * * *
37504744 CTTTTGACCCA-TTTCTCTGTATCTTATCAGGAAGAT-GGGTTTTGAAGTTTAATTCAAATTGAG
1 GTTTTGACCCACTTT-TTTGTATCTCATCAAGAAGATAGGG-TTTGAAGTCTCACTCACATTGAG
* * * * *
37504807 CTGT-GCTTCAAT-GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGATCGCTTCTTTGA-
64 CT-TCACTTC-ATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATT-AT
* * * * * *
37504869 TTTAATCCACTTCTCTTTATGTCATGAATAAGACGGA-TTTGGTTC-ACTTCTCTGCATCTCATC
126 TTTAATCCACTTCTCTGTATCTCATCAAGAAGACGGATTTTGG-ACAACTTCTCTGTATCTCATC
* * *
37504932 AAGAAGATGACCACTTTATTG
190 AGGAATATGACCTCTTTATTG
37504953 CTTCGGATGA
Statistics
Matches: 1872, Mismatches: 195, Indels: 30
0.89 0.09 0.01
Matches are distributed among these distances:
619 1 0.00
620 134 0.07
621 11 0.01
624 393 0.21
625 1155 0.62
626 175 0.09
627 3 0.00
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (625 bp):
GTTTTGACCCACTTTTTTGTATCTCATCAAGAAGATAGGGTTTGAAGTCTCACTCACATTGAGCT
TCACTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTATTTTAA
TCCACTTCTCTGTATCTCATCAAGAAGACGGATTTTGGACAACTTCTCTGTATCTCATCAGGAAT
ATGACCTCTTTATTGTTTTGACCCACTTCTCTATATCTCATCAGAAAGATGGGGTTTGAAGTTTC
ACTCACATTGAGCTTTGCTTCATCGATTTGGTCTACTTCTCAGTATCTCATCAGGAAGATGACCG
CCTCTTTATTTTAATCCACTTCTCAGTATCTCATCAGGAAGATGGATTTGGACAACTTCTTTATA
TCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGG
GGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATCGATTTGGTCCACTTCTCAGTATCTCATC
AGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTGTATCTCATCAAGAAGACGGATTTGGA
CAACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATT
Found at i:37503922 original size:85 final size:85
Alignment explanation
Indices: 37503787--37503946 Score: 218
Period size: 85 Copynumber: 1.9 Consensus size: 85
37503777 GATTTGGTCT
*
37503787 ACTTCTCAATATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAATCCACTTCT-TAGTATCTCA
1 ACTTCTCAATATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAACCCACTTCTCTA-TATCTCA
37503851 TCAGGAAGATGGATTTGTACA
65 TCAGGAAGATGGATTTGTACA
* * * * *
37503872 ACTTCTCTATATCTCATTAGGAAGATGACC-TCT-TTATTTCTTTGACCCACTTCTCTATATCTC
1 ACTTCTCAATATCTCATCAGGAAGATGACCGCCTCTT-TGT-TTTAACCCACTTCTCTATATCTC
37503935 ATCAGGAAGATG
64 ATCAGGAAGATG
37503947 AGGTTTGAAG
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
83 2 0.03
84 4 0.06
85 58 0.88
86 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (85 bp):
ACTTCTCAATATCTCATCAGGAAGATGACCGCCTCTTTGTTTTAACCCACTTCTCTATATCTCAT
CAGGAAGATGGATTTGTACA
Found at i:37504130 original size:85 final size:85
Alignment explanation
Indices: 37503985--37504152 Score: 237
Period size: 85 Copynumber: 2.0 Consensus size: 85
37503975 TCACTTCATC
* * * *
37503985 GATTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTGTTTTAATCCACTTCTT
1 GATTTGGACAACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTATTTTAACCCACTTCTT
37504050 TGTATCTCATCAAGAAGACG
66 TGTATCTCATCAAGAAGACG
** * * * * *
37504070 GATTTGGACAACTTCTTTGTATCTCATCAGGAAGATGACCTCTTTATTATTTTGACCCACTTTTT
1 GATTTGGACAACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTATTTTAACCCACTTCTT
37504135 TGTATCTCATCAAGAAGA
66 TGTATCTCATCAAGAAGA
37504153 TAGGGTTTGA
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (85 bp):
GATTTGGACAACTTCTCAGTATCTCATCAGGAAGATGACCGCCTCATTATTTTAACCCACTTCTT
TGTATCTCATCAAGAAGACG
Found at i:37504765 original size:86 final size:86
Alignment explanation
Indices: 37504628--37504787 Score: 203
Period size: 86 Copynumber: 1.9 Consensus size: 86
37504618 CTACTTCTCA
* * *
37504628 GTATCTCATCAGGAATATGACCGCCTCATTTTTTTAATCCACTTCTCTGTATCTCATAAGGAAGA
1 GTATCTCATCAGGAAGATGACCGCCTCATTCTTTTAACCCACTTCTCTGTATCTCATAAGGAAGA
37504693 CGGATTTTGGACAACTTCTTT
66 CGGATTTTGGACAACTTCTTT
** * * * * * *
37504714 GTATCTCATCAGGAAGATGACTTCTTTATTCTTTTGACCCATTTCTCTGTATCTTATCAGGAAGA
1 GTATCTCATCAGGAAGATGACCGCCTCATTCTTTTAACCCACTTCTCTGTATCTCATAAGGAAGA
* *
37504779 TGGGTTTTG
66 CGGATTTTG
37504788 AAGTTTAATT
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
86 61 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (86 bp):
GTATCTCATCAGGAAGATGACCGCCTCATTCTTTTAACCCACTTCTCTGTATCTCATAAGGAAGA
CGGATTTTGGACAACTTCTTT
Found at i:37505012 original size:40 final size:39
Alignment explanation
Indices: 37504967--37505079 Score: 133
Period size: 39 Copynumber: 2.9 Consensus size: 39
37504957 GGATGACTAT
37504967 AATCTGCCTCATGATCGGGGGTAAGAGATTGGATGGCTGC
1 AATCTGCCTCATGATC-GGGGTAAGAGATTGGATGGCTGC
* * *
37505007 AATCTGCC-CTATGATCGGGGTAAAAGA-TCGAGTGGTTGC
1 AATCTGCCTC-ATGATCGGGGTAAGAGATTGGA-TGGCTGC
*
37505046 AATCTG-CTCCATGATCGAGGTAAGAGATTGGATG
1 AATCTGCCT-CATGATCGGGGTAAGAGATTGGATG
37505080 ATAATGTAAC
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
38 4 0.06
39 40 0.65
40 18 0.29
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (39 bp):
AATCTGCCTCATGATCGGGGTAAGAGATTGGATGGCTGC
Found at i:37505386 original size:49 final size:48
Alignment explanation
Indices: 37505333--37505462 Score: 134
Period size: 50 Copynumber: 2.6 Consensus size: 48
37505323 CCAAGTTCGT
*
37505333 CGGCCTCAACCTTTCCTTTCACATCTTCATGGTATCGGATTCGCCGTTG
1 CGGCCTCAACCTTTCC-TTCACATCTTCATGGTACCGGATTCGCCGTTG
* * * * *
37505382 CGGCCTCAATCCTTTCCATCACATCTTTTAAGGTACCGGGTTCGTCGTTG
1 CGGCCTCAA-CCTTTCCTTCACATC-TTCATGGTACCGGATTCGCCGTTG
* * * *
37505432 CGACCTTAAGCTTTCCCTTCAAATCTTCATG
1 CGGCCTCAACCTTT-CCTTCACATCTTCATG
37505463 TTTCCTTGGT
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
49 24 0.37
50 41 0.63
ACGTcount: A:0.17, C:0.32, G:0.17, T:0.35
Consensus pattern (48 bp):
CGGCCTCAACCTTTCCTTCACATCTTCATGGTACCGGATTCGCCGTTG
Found at i:37516674 original size:13 final size:13
Alignment explanation
Indices: 37516656--37516682 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37516646 TAACTAATCA
37516656 ACTGCATAAAATT
1 ACTGCATAAAATT
37516669 ACTGCATAAAATT
1 ACTGCATAAAATT
37516682 A
1 A
37516683 ATTTTGTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTGCATAAAATT
Found at i:37518939 original size:40 final size:38
Alignment explanation
Indices: 37518871--37519005 Score: 96
Period size: 40 Copynumber: 3.4 Consensus size: 38
37518861 ACCAGAATGG
* *
37518871 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAAAGTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAG-AATAAAGTGA
* *
37518911 CACCCAGTGTCTCATCGGCCTAGCCGAAG--TAAAGTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAATAAAGTGA
* * * * *
37518948 TACCCAGTACCTCATCGAATCTATCCGAAGTAA-AATAATGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAG-AATAA-AGTGA
*
37518989 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
37519006 ACTCGAGGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
37 21 0.28
38 9 0.12
40 24 0.32
41 20 0.27
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAATAAAGTGA
Found at i:37519003 original size:41 final size:38
Alignment explanation
Indices: 37518903--37519006 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 38
37518893 TTCGAAGCAA
* *
37518903 TAAAGTGACACCCAGTGTCTCATCG-GCCTAGCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
* ** ** * *
37518940 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
37518978 TAAAATAATGACACCCAGTGTCTCATCGA
1 T--AA-AATGACACCCAGTGTCTCATCGA
37519007 CTCGAGGTCG
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
37 21 0.41
38 10 0.20
40 2 0.04
41 18 0.35
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (38 bp):
TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
Found at i:37519120 original size:23 final size:25
Alignment explanation
Indices: 37519089--37519164 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 25
37519079 TTAATAGGGA
37519089 TTTTCAATTTACAA-TTCA-TATCAC
1 TTTTCAATTT-CAACTTCACTATCAC
*
37519113 TTTT-AATTTCAACTTCACTTTCAC
1 TTTTCAATTTCAACTTCACTATCAC
* * *
37519137 -TTTCACTTTC-ACTTTCACTTTCAA
1 TTTTCAATTTCAAC-TTCACTATCAC
37519161 TTTT
1 TTTT
37519165 GATCACAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
22 3 0.07
23 14 0.32
24 24 0.55
25 3 0.07
ACGTcount: A:0.25, C:0.24, G:0.00, T:0.51
Consensus pattern (25 bp):
TTTTCAATTTCAACTTCACTATCAC
Found at i:37519130 original size:18 final size:18
Alignment explanation
Indices: 37519109--37519163 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
37519099 ACAATTCATA
* * *
37519109 TCACTTTTAATTTCAACT
1 TCACTTTCACTTTCAATT
*
37519127 TCACTTTCACTTTCACTT
1 TCACTTTCACTTTCAATT
37519145 TCACTTTCACTTTCAATT
1 TCACTTTCACTTTCAATT
37519163 T
1 T
37519164 TGATCACAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (18 bp):
TCACTTTCACTTTCAATT
Found at i:37519135 original size:6 final size:6
Alignment explanation
Indices: 37519126--37519159 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
37519116 TAATTTCAAC
37519126 TTCACT TTCACT TTCACT TTCACT TTCACT TTCA
1 TTCACT TTCACT TTCACT TTCACT TTCACT TTCA
37519160 ATTTTGATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.32, G:0.00, T:0.50
Consensus pattern (6 bp):
TTCACT
Found at i:37523796 original size:55 final size:56
Alignment explanation
Indices: 37523666--37523805 Score: 219
Period size: 55 Copynumber: 2.5 Consensus size: 56
37523656 CACAGGGGGG
* * * *
37523666 TGTGTGTATATACTATTTGGAGGCACATGGGCTGGCACACGAGGGTGTGTCCAGGT
1 TGTGTGTCTATACTATTTGGAGGCACACGAGCTGGCACACGAGGGTGTGTCCAGGA
* *
37523722 TGTGTGTCTATACTGTTTGGAGGCACACGAGCTGGCACACG-GGGTGTGTCTAGGA
1 TGTGTGTCTATACTATTTGGAGGCACACGAGCTGGCACACGAGGGTGTGTCCAGGA
37523777 TGTGTGTCTATACTATTTGGAGGCACACG
1 TGTGTGTCTATACTATTTGGAGGCACACG
37523806 GACGTGGATC
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 40 0.52
56 37 0.48
ACGTcount: A:0.19, C:0.17, G:0.34, T:0.29
Consensus pattern (56 bp):
TGTGTGTCTATACTATTTGGAGGCACACGAGCTGGCACACGAGGGTGTGTCCAGGA
Found at i:37524397 original size:40 final size:40
Alignment explanation
Indices: 37524360--37524500 Score: 194
Period size: 40 Copynumber: 3.5 Consensus size: 40
37524350 TTTACTGAGT
37524360 TGGCAGTGACACTGTAAACACTGCAAGGTTACCACTGAAC
1 TGGCAGTGACACTGTAAACACTGCAAGGTTACCACTGAAC
* ** ** *
37524400 TGGTAGTGACACTGTAAACACTGCAATATTATAATTGAAC
1 TGGCAGTGACACTGTAAACACTGCAAGGTTACCACTGAAC
* *
37524440 TGGCACTGACACTGTAAACATTGCAAGGTTACCACTGAAC
1 TGGCAGTGACACTGTAAACACTGCAAGGTTACCACTGAAC
*
37524480 T-GTAGTGACACTGTAAACACT
1 TGGCAGTGACACTGTAAACACT
37524501 ACAACATGTC
Statistics
Matches: 84, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
39 17 0.20
40 67 0.80
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (40 bp):
TGGCAGTGACACTGTAAACACTGCAAGGTTACCACTGAAC
Found at i:37524669 original size:17 final size:17
Alignment explanation
Indices: 37524647--37524704 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
37524637 CATCCATAAT
*
37524647 TGTATTTGTGACATGAC
1 TGTATCTGTGACATGAC
*
37524664 TGTAT-T-TG---TAAC
1 TGTATCTGTGACATGAC
*
37524676 TGTATCTGTGACATGAT
1 TGTATCTGTGACATGAC
37524693 TGTATCTGTGAC
1 TGTATCTGTGAC
37524705 TGTATTTGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
12 8 0.24
13 1 0.03
14 2 0.06
15 2 0.06
16 1 0.03
17 19 0.58
ACGTcount: A:0.22, C:0.12, G:0.22, T:0.43
Consensus pattern (17 bp):
TGTATCTGTGACATGAC
Found at i:37524696 original size:29 final size:29
Alignment explanation
Indices: 37524583--37524709 Score: 112
Period size: 29 Copynumber: 4.4 Consensus size: 29
37524573 CGTCTACATT
* * *
37524583 TGTAACTATATCTGT-ATCATGTCTGCATC
1 TGTAACTGTATCTGTGA-CATGACTGTATC
* * * *
37524612 CGTAACTATATCTGTAACATGACTGCATC
1 TGTAACTGTATCTGTGACATGACTGTATC
** * * *
37524641 CATAATTGTATTTGTGACATGACTGTATT
1 TGTAACTGTATCTGTGACATGACTGTATC
*
37524670 TGTAACTGTATCTGTGACATGATTGTATC
1 TGTAACTGTATCTGTGACATGACTGTATC
*
37524699 TGTGACTGTAT
1 TGTAACTGTAT
37524710 TTGTAATTGT
Statistics
Matches: 81, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
29 80 0.99
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (29 bp):
TGTAACTGTATCTGTGACATGACTGTATC
Found at i:37531587 original size:18 final size:18
Alignment explanation
Indices: 37531560--37531618 Score: 82
Period size: 18 Copynumber: 3.3 Consensus size: 18
37531550 CAATCGAACT
*
37531560 AGATGTGATCACAAGACC
1 AGATGCGATCACAAGACC
* *
37531578 AGATGCGATCACATGATC
1 AGATGCGATCACAAGACC
*
37531596 AGATGCGATCACAAAACC
1 AGATGCGATCACAAGACC
37531614 AGATG
1 AGATG
37531619 TAGTCATACA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (18 bp):
AGATGCGATCACAAGACC
Found at i:37537268 original size:17 final size:18
Alignment explanation
Indices: 37537246--37537279 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
37537236 TTCCTAAAAA
*
37537246 GAAAGAGAAAGG-GAAGG
1 GAAAGAAAAAGGAGAAGG
37537263 GAAAGAAAAAGGAGAAG
1 GAAAGAAAAAGGAGAAG
37537280 CAAGAAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (18 bp):
GAAAGAAAAAGGAGAAGG
Found at i:37537793 original size:12 final size:12
Alignment explanation
Indices: 37537778--37537827 Score: 61
Period size: 12 Copynumber: 4.3 Consensus size: 12
37537768 AAGGAGCCAG
37537778 AGAAGAAGAGAA
1 AGAAGAAGAGAA
37537790 AGAAG-A-A-AA
1 AGAAGAAGAGAA
37537799 AGAAGAAGAGAA
1 AGAAGAAGAGAA
*
37537811 GGAAGAAGAGGAA
1 AGAAGAAGA-GAA
37537824 AGAA
1 AGAA
37537828 TTGCCCCGAC
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
9 7 0.22
10 2 0.06
11 2 0.06
12 15 0.47
13 6 0.19
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (12 bp):
AGAAGAAGAGAA
Found at i:37537804 original size:21 final size:21
Alignment explanation
Indices: 37537778--37537817 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
37537768 AAGGAGCCAG
37537778 AGAAGAAGAGAAAGAAGAAAA
1 AGAAGAAGAGAAAGAAGAAAA
*
37537799 AGAAGAAGAGAAGGAAGAA
1 AGAAGAAGAGAAAGAAGAA
37537818 GAGGAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (21 bp):
AGAAGAAGAGAAAGAAGAAAA
Found at i:37538131 original size:27 final size:27
Alignment explanation
Indices: 37538101--37538164 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
37538091 AAAAGGAAAG
* *
37538101 CAAAGAAGAAATCCAAGGAGGAGCCCC
1 CAAAGAAGAAATCCAAGGAGGAACACC
37538128 CAAAGAAGAAATCCAAGGAGGAACACC
1 CAAAGAAGAAATCCAAGGAGGAACACC
37538155 CAAAGAAGAA
1 CAAAGAAGAA
37538165 GAAAAAGACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.52, C:0.22, G:0.23, T:0.03
Consensus pattern (27 bp):
CAAAGAAGAAATCCAAGGAGGAACACC
Found at i:37538937 original size:25 final size:21
Alignment explanation
Indices: 37538886--37538942 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
37538876 AGAGAAAGAG
*
37538886 AAAAAGAAAGAAAAAATTGGC
1 AAAAAGAAAGAAAAAATTGAC
37538907 AAAAAGAAAGAAAAAATTGAC
1 AAAAAGAAAGAAAAAATTGAC
*
37538928 AAATAGAAAGAAAAA
1 AAAAAGAAAGAAAAA
37538943 GAAAGAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.72, C:0.04, G:0.16, T:0.09
Consensus pattern (21 bp):
AAAAAGAAAGAAAAAATTGAC
Found at i:37548678 original size:27 final size:27
Alignment explanation
Indices: 37548637--37548717 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
37548627 TGAGCGATAT
* * * *
37548637 ATATTCTGTATTTGGCTTGAATGAGTG
1 ATATTATGTAATTGGCTCGAATGAGCG
* *
37548664 ATATTTTGTAATTGGCTCGAATAAGCG
1 ATATTATGTAATTGGCTCGAATGAGCG
37548691 ATATTATGT-ATCTGGCTCGAATGAGCG
1 ATATTATGTAAT-TGGCTCGAATGAGCG
37548718 GTAAATATCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
26 2 0.04
27 44 0.96
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (27 bp):
ATATTATGTAATTGGCTCGAATGAGCG
Found at i:37548769 original size:27 final size:27
Alignment explanation
Indices: 37548656--37548811 Score: 93
Period size: 27 Copynumber: 5.7 Consensus size: 27
37548646 ATTTGGCTTG
* * *
37548656 AATGAGTGATATTTTGTAAT-TGGCTCG
1 AATGAGCGATATTTTGT-ATCTAGCTCA
* * * *
37548683 AATAAGCGATATTATGTATCTGGCTCG
1 AATGAGCGATATTTTGTATCTAGCTCA
* * * * *
37548710 AATGAGCGGTAAATATCTGCATATGGCTCA
1 AATGAGC-G-ATAT-TTTGTATCTAGCTCA
37548740 AATGAGCGATATTTT-TCATCTAGCTCA
1 AATGAGCGATATTTTGT-ATCTAGCTCA
*
37548767 AATGAGC-ATTATTTTGTATCTGGCTCA
1 AATGAGCGA-TATTTTGTATCTAGCTCA
* * *
37548794 AACGAGCGGTATTCTGTA
1 AATGAGCGATATTTTGTA
37548812 ATTGCTGAAT
Statistics
Matches: 103, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
26 3 0.03
27 73 0.71
28 5 0.05
29 4 0.04
30 18 0.17
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.35
Consensus pattern (27 bp):
AATGAGCGATATTTTGTATCTAGCTCA
Found at i:37550221 original size:51 final size:51
Alignment explanation
Indices: 37550115--37550222 Score: 117
Period size: 51 Copynumber: 2.1 Consensus size: 51
37550105 ATGCTGATAT
* * ** * * * *
37550115 AATGTGTAAATATTATAGGATAGGTTTGTTAAATTAGGACCAAACTGATAG
1 AATGTGCAAATATTATAGGACAAATTTGTTAAATCAAGACCAAACTGACAA
* * *
37550166 AATGTGCAAATATTATAGGCCAAATTTGTTAAATCAAGATCAAATTGACAA
1 AATGTGCAAATATTATAGGACAAATTTGTTAAATCAAGACCAAACTGACAA
37550217 AATGTG
1 AATGTG
37550223 TAAGCTTTGA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (51 bp):
AATGTGCAAATATTATAGGACAAATTTGTTAAATCAAGACCAAACTGACAA
Found at i:37558332 original size:62 final size:60
Alignment explanation
Indices: 37558237--37558399 Score: 211
Period size: 62 Copynumber: 2.7 Consensus size: 60
37558227 TTTGTACATG
* *
37558237 AACTTGACACTTTTTCCTAATTTGGTATCTAAACTTTTTTTTGACCCAATTCAG-TACCTA
1 AACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTTTGACACAATT-AGATACCTA
** * *
37558297 AACTTGACACTTTTTTTTTTAATTTGGTACCTAAACTTTTTTTTGACACAATTTGATTCCTA
1 AACTTGACAC--TTTTTCCTAATTTGGTACCTAAACTTTTTTTTGACACAATTAGATACCTA
* * *
37558359 AACTTGGCAATTTTTCCTAATTTGGTACCTAATCTTTTTTT
1 AACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTT
37558400 AGATTCAATT
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
60 38 0.43
61 1 0.01
62 50 0.56
ACGTcount: A:0.25, C:0.18, G:0.09, T:0.48
Consensus pattern (60 bp):
AACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTTTGACACAATTAGATACCTA
Found at i:37558419 original size:60 final size:60
Alignment explanation
Indices: 37558237--37558419 Score: 204
Period size: 60 Copynumber: 3.0 Consensus size: 60
37558227 TTTGTACATG
* * * **
37558237 AACTTGACACTTTTTCCTAATTTGGTATCTAAACTTTTTTTTGACCCAATTCAGTACCTA
1 AACTTGACAATTTTTCCTAATTTGGTACCTAAACTTTTTTTTGACACAATTTGGTACCTA
* ** * *
37558297 AACTTGACACTTTTTTTTTTAATTTGGTACCTAAACTTTTTTTTGACACAATTTGATTCCTA
1 AACTTGACA--ATTTTTCCTAATTTGGTACCTAAACTTTTTTTTGACACAATTTGGTACCTA
* * * ** *
37558359 AACTTGGCAATTTTTCCTAATTTGGTACCTAATCTTTTTTTAGATTCAATTTGGCACCTA
1 AACTTGACAATTTTTCCTAATTTGGTACCTAAACTTTTTTTTGACACAATTTGGTACCTA
37558419 A
1 A
37558420 TTAAATATTA
Statistics
Matches: 101, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
60 51 0.50
62 50 0.50
ACGTcount: A:0.26, C:0.19, G:0.09, T:0.46
Consensus pattern (60 bp):
AACTTGACAATTTTTCCTAATTTGGTACCTAAACTTTTTTTTGACACAATTTGGTACCTA
Found at i:37558717 original size:31 final size:30
Alignment explanation
Indices: 37558620--37558723 Score: 138
Period size: 30 Copynumber: 3.5 Consensus size: 30
37558610 CCCCAAAAAG
* *
37558620 TTTAAGTACCAACTTAA-AAAAATGTCAAG
1 TTTAAGTACCAAATTAAGAAAAATGTCAAA
* *
37558649 TTTAGGTACCAAATTAGGAAAAATGTCAAA
1 TTTAAGTACCAAATTAAGAAAAATGTCAAA
*
37558679 TTTAAGTACCAAATTAAGAAAAATTATCAAA
1 TTTAAGTACCAAATTAAGAAAAA-TGTCAAA
*
37558710 TTCAAGTACCAAAT
1 TTTAAGTACCAAAT
37558724 GTTATATTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
29 14 0.22
30 32 0.49
31 19 0.29
ACGTcount: A:0.49, C:0.12, G:0.11, T:0.28
Consensus pattern (30 bp):
TTTAAGTACCAAATTAAGAAAAATGTCAAA
Found at i:37560685 original size:16 final size:17
Alignment explanation
Indices: 37560633--37560690 Score: 52
Period size: 16 Copynumber: 3.5 Consensus size: 17
37560623 AAATAATACA
37560633 TAAA-AAATAACT-AAG
1 TAAATAAATAACTAAAG
*
37560648 TAAA-AAATAAAGTGAAATG
1 TAAATAAAT-AACT-AAA-G
37560667 TAAATAAATAA-TAAAG
1 TAAATAAATAACTAAAG
37560683 TAAATAAA
1 TAAATAAA
37560691 AGGAGTAATG
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
15 8 0.22
16 12 0.32
17 3 0.08
18 3 0.08
19 7 0.19
20 4 0.11
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (17 bp):
TAAATAAATAACTAAAG
Found at i:37562494 original size:45 final size:45
Alignment explanation
Indices: 37562428--37562667 Score: 268
Period size: 45 Copynumber: 5.4 Consensus size: 45
37562418 CCCCATGATC
* * * *
37562428 GGGGTAAGAGATTGGATGGTGGCTTCAATTTTCCCCTCTTGACTA
1 GGGGTAAAAGATTGGAAGGTGGCTTCAATCTTCCCCTCTTGATTA
* * *
37562473 GGGGTAAAAGATTGAAAGGTGGCTTCAATCTGCCCCTTTTGATTA
1 GGGGTAAAAGATTGGAAGGTGGCTTCAATCTTCCCCTCTTGATTA
* * * *
37562518 GGGGTAAAAGATTGGACA-GTGGCTTCAATCTGCCCCTCCTAAATA
1 GGGGTAAAAGATTGGA-AGGTGGCTTCAATCTTCCCCTCTTGATTA
* * * *
37562563 GGAGTAAAAGATTGGACGATGGCTTCAATC-TGCCCTCTTGATTA
1 GGGGTAAAAGATTGGAAGGTGGCTTCAATCTTCCCCTCTTGATTA
* * * * *
37562607 GAGGTAAAATATTGGATGGAGGCTTCAATATTCCCCTCTTGATTA
1 GGGGTAAAAGATTGGAAGGTGGCTTCAATCTTCCCCTCTTGATTA
*
37562652 AGGGTAAAAGATTGGA
1 GGGGTAAAAGATTGGA
37562668 TGATGTTTTC
Statistics
Matches: 161, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
44 32 0.20
45 128 0.80
46 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (45 bp):
GGGGTAAAAGATTGGAAGGTGGCTTCAATCTTCCCCTCTTGATTA
Found at i:37562546 original size:90 final size:89
Alignment explanation
Indices: 37562428--37562711 Score: 302
Period size: 89 Copynumber: 3.2 Consensus size: 89
37562418 CCCCATGATC
* * * *
37562428 GGGGTAAGAGATTGGATGGTGGCTTCAATTTTCCCCTCTTGACTAGGGGTAAAAGATTGAAAGGT
1 GGGGTAAAAGATTGGATGGTGGCTTCAATATTCCCCTCTTGAATAGGGGTAAAAGATTGAAAGAT
*
37562493 GGCTTCAATCTGCCCCTTTTGATTA
66 GGCTTCAATCTG-CCCTCTTGATTA
** * * * * * * *
37562518 GGGGTAAAAGATTGGACAGTGGCTTCAATCTGCCCCTCCTAAATAGGAGTAAAAGATTGGACGAT
1 GGGGTAAAAGATTGGATGGTGGCTTCAATATTCCCCTCTTGAATAGGGGTAAAAGATTGAAAGAT
37562583 GGCTTCAATCTGCCCTCTTGATTA
66 GGCTTCAATCTGCCCTCTTGATTA
* * * * * * *
37562607 GAGGTAAAATATTGGATGGAGGCTTCAATATTCCCCTCTTGATTAAGGGTAAAAGATTGGATGAT
1 GGGGTAAAAGATTGGATGGTGGCTTCAATATTCCCCTCTTGAATAGGGGTAAAAGATTGAAAGAT
** * * *
37562672 GTTTTCAATGTGCCC-CATGA-TC
66 GGCTTCAATCTGCCCTCTTGATTA
*
37562694 GGGGTAAGAGATTGGATG
1 GGGGTAAAAGATTGGATG
37562712 ACATCAATTT
Statistics
Matches: 160, Mismatches: 34, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
87 16 0.10
88 4 0.03
89 75 0.47
90 65 0.41
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (89 bp):
GGGGTAAAAGATTGGATGGTGGCTTCAATATTCCCCTCTTGAATAGGGGTAAAAGATTGAAAGAT
GGCTTCAATCTGCCCTCTTGATTA
Found at i:37562643 original size:89 final size:88
Alignment explanation
Indices: 37562387--37562711 Score: 289
Period size: 89 Copynumber: 3.7 Consensus size: 88
37562377 CTCATGGTCG
* * ** * * * * *
37562387 GGGTAAGAGATTGGATGATATCTTCAATTTGCCC-CATGA-TCGGGGTAAGAGATTGGATGGTGG
1 GGGTAAAAGATTGGAAGATGGCTTCAATCTGCCCTCTTGATTAGAGGTAAAAGATTGGATGGTGG
* *
37562450 CTTCAATTTTCCCCTCTTGACTA
66 CTTCAATATTCCCCTCTTGAATA
* * * * **
37562473 GGGGTAAAAGATTGAAAGGTGGCTTCAATCTGCCCCTTTTGATTAGGGGTAAAAGATTGGACAGT
1 -GGGTAAAAGATTGGAAGATGGCTTCAATCTG-CCCTCTTGATTAGAGGTAAAAGATTGGATGGT
* * * *
37562538 GGCTTCAATCTGCCCCTCCTAAATA
64 GGCTTCAATATTCCCCTCTTGAATA
* * *
37562563 GGAGTAAAAGATTGGACGATGGCTTCAATCTGCCCTCTTGATTAGAGGTAAAATATTGGATGGAG
1 GG-GTAAAAGATTGGAAGATGGCTTCAATCTGCCCTCTTGATTAGAGGTAAAAGATTGGATGGTG
*
37562628 GCTTCAATATTCCCCTCTTGATTAA
65 GCTTCAATATTCCCCTCTTGAAT-A
* ** * * * * *
37562653 GGGTAAAAGATTGGATGATGTTTTCAATGTGCCC-CATGA-TCGGGGTAAGAGATTGGATG
1 GGGTAAAAGATTGGAAGATGGCTTCAATCTGCCCTCTTGATTAGAGGTAAAAGATTGGATG
37562712 ACATCAATTT
Statistics
Matches: 192, Mismatches: 41, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
87 40 0.21
88 7 0.04
89 78 0.41
90 67 0.35
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (88 bp):
GGGTAAAAGATTGGAAGATGGCTTCAATCTGCCCTCTTGATTAGAGGTAAAAGATTGGATGGTGG
CTTCAATATTCCCCTCTTGAATA
Found at i:37562680 original size:45 final size:44
Alignment explanation
Indices: 37562387--37562672 Score: 224
Period size: 45 Copynumber: 6.5 Consensus size: 44
37562377 CTCATGGTCG
* ** * * **
37562387 GGGTAAGAGATTGGATGATATCTTCAATTTGCCC-CATGA-TCG
1 GGGTAAAAGATTGGATGATGGCTTCAATTTCCCCTCTTGATTAA
* * * *
37562429 GGGTAAGAGATTGGATGGTGGCTTCAATTTTCCCCTCTTGACTAG
1 GGGTAAAAGATTGGATGATGGCTTCAA-TTTCCCCTCTTGATTAA
* * * * * *
37562474 GGGTAAAAGATTGAAAGGTGGCTTCAATCTGCCCCTTTTGATTAG
1 GGGTAAAAGATTGGATGATGGCTTCAAT-TTCCCCTCTTGATTAA
* * * * *
37562519 GGGTAAAAGATTGGA-CAGTGGCTTCAATCTGCCCCTCCTAAAT-A
1 GGGTAAAAGATTGGATGA-TGGCTTCAAT-TTCCCCTCTTGATTAA
* * *
37562563 GGAGTAAAAGATTGGACGATGGCTTCAATCTGCCCTCTTGATT-A
1 GG-GTAAAAGATTGGATGATGGCTTCAATTTCCCCTCTTGATTAA
*
37562607 GAGGTAAAATATTGGATGGA-GGCTTCAATATTCCCCTCTTGATTAA
1 G-GGTAAAAGATTGGAT-GATGGCTTCAAT-TTCCCCTCTTGATTAA
37562653 GGGTAAAAGATTGGATGATG
1 GGGTAAAAGATTGGATGATG
37562673 TTTTCAATGT
Statistics
Matches: 200, Mismatches: 32, Indels: 21
0.79 0.13 0.08
Matches are distributed among these distances:
42 24 0.12
43 6 0.03
44 40 0.20
45 127 0.63
46 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (44 bp):
GGGTAAAAGATTGGATGATGGCTTCAATTTCCCCTCTTGATTAA
Found at i:37562882 original size:40 final size:40
Alignment explanation
Indices: 37562323--37563427 Score: 712
Period size: 40 Copynumber: 27.1 Consensus size: 40
37562313 GAGATGGTAG
*
37562323 CTTCAATCTGCCTCCCTTGATTTAAGGGTAAAAGATTGGATG-G-
1 CTTCAATCTGCC-CTC-TGA-TT-AGGGTAAAAGATTGG-TGTGT
* * ** * *
37562366 CTTCGATCTG-CCTCATGGTCGGGGTAAGAGATTGGATGATAT
1 CTTCAATCTGCCCTC-TGATTAGGGTAAAAGATTGG-TG-TGT
* ** * *
37562408 CTTCAATTTGCCC-CATGATCGGGGTAAGAGATTGGATGGTGG
1 CTTCAATCTGCCCTC-TGATTAGGGTAAAAGATTGG-T-GTGT
* * * *
37562450 CTTCAATTTTCCCCTCTTGACTAGGGGTAAAAGATTGAAAG-GTGG
1 CTTCAA-TCTGCCCTC-TGATTA-GGGTAAAAGATTG---GTGTGT
* * *
37562495 CTTCAATCTGCCCCTTTTGATTAGGGGTAAAAGATTGGACAGTGG
1 CTTCAATCTG-CCC-TCTGATTA-GGGTAAAAGATTGG--TGTGT
* * * *
37562540 CTTCAATCTGCCCCTCCTAAATAGGAGTAAAAGATTGGACGATGG
1 CTTCAATCTG-CCCT-CTGATTAGG-GTAAAAGATTGG-TG-TGT
* * *
37562585 CTTCAATCTGCCCTCTTGATTAGAGGTAAAATATTGGATGGAGG
1 CTTCAATCTGCCCTC-TGATTAG-GGTAAAAGATTGG-T-GTGT
* *
37562629 CTTCAATATTCCCCTCTTGATTAAGGGTAAAAGATTGGATGATGT
1 CTTCAAT-CTGCCCTC-TGATT-AGGGTAAAAGATTGG-TG-TGT
* * ** * * *
37562674 TTTCAATGTGCCC-CATGATCGGGGTAAGAGATTGG-ATGA
1 CTTCAATCTGCCCTC-TGATTAGGGTAAAAGATTGGTGTGT
* * ** ** * * *
37562713 CATCAATTTGCCCAATGATCGGGGTAAGAGATTGACTAATGT
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTG-GT-GTGT
* *
37562755 CTTCAATCTGTCCTCTGGTTAGGGTAAAAGATTGGATG-G-
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGG-TGTGT
* * * * ** * * *
37562794 CTTCATTCTGCTCTATGGTCGGGGTGATAGATTGGTGTAT
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
* * *
37562834 CTTTAATCTACCTTCTGATTAGGGTAAAAGATTGGTGTGT
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
* * * * *
37562874 CTTCAATCTGTCCTTTGATTAGGGTAAGAGATCGATGTGT
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
*
37562914 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGG-ATG-
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
**
37562952 CTTCAATCTGTCCC-AAGATTAGGGTAAAAGATTGGTGTGT
1 CTTCAATCTG-CCCTCTGATTAGGGTAAAAGATTGGTGTGT
*
37562992 CTTCAATCTGCCCTCTGA-TAGGGTAAAAGATTGG-ATG-
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
* ** *
37563029 CTTCAATCTACCC-CATGATCGGGGTAAGAGATTGGTGTGT
1 CTTCAATCTGCCCTC-TGATTAGGGTAAAAGATTGGTGTGT
* *
37563069 CTTCAATCAGCCCTCTAATTAGGGTAAAAGATTGGTGTGT
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
* * *
37563109 CTTCAATTTGCCCTATGATTAGGGTAAAAGATTGG-ATG-
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
* * * *
37563147 CTTCAATGC-GCCC-CAAGATTAGGTTAAAAGAATGTTGTGT
1 CTTCAAT-CTGCCCTC-TGATTAGGGTAAAAGATTGGTGTGT
* * * *
37563187 ATTCAATATGCCCTCTAATTAGGGTAAAAGATTGG-ATG-
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
* * *
37563225 CTTCAATCTGCCC-CATGA-TCGAGCTAAGAGATTGGTGTGT
1 CTTCAATCTGCCCTC-TGATTAG-GGTAAAAGATTGGTGTGT
* * * *
37563265 CTTGAATCTGCCCTCTGATTAGGGTAAGAGATTGGTTTGC
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
* * *
37563305 CTTCAATCTGCCCTTTGATTAGGGTAAAATATTAGTGTGT
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
* *
37563345 CTTCAATCTTCCCTCTGATTAGGGTAAGAGATTGGTGTGT
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
* * * *
37563385 CTTCAGTCTACCC-CATGATTGGGGTAAGAGATTGGTGTGT
1 CTTCAATCTGCCCTC-TGATTAGGGTAAAAGATTGGTGTGT
37563425 CTT
1 CTT
37563428 TGCTTTGCTT
Statistics
Matches: 845, Mismatches: 163, Indels: 111
0.76 0.15 0.10
Matches are distributed among these distances:
36 1 0.00
37 18 0.02
38 97 0.11
39 111 0.13
40 328 0.39
41 9 0.01
42 82 0.10
43 24 0.03
44 45 0.05
45 126 0.15
46 3 0.00
48 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (40 bp):
CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGTGTGT
Found at i:37562988 original size:118 final size:119
Alignment explanation
Indices: 37562323--37563427 Score: 645
Period size: 118 Copynumber: 9.0 Consensus size: 119
37562313 GAGATGGTAG
* * * *
37562323 CTTCAATCTGCCTCCCTTGATTTAAGGGTAAAAGATTGGATG-G-CTTCGATCTG-CCTCATGGT
1 CTTCAATCTGCC-CTCTAGA-TT-AGGGTAAAAGATTGG-TGTGTCTTCAATCTGCCCT-ATGAT
** * * ** *
37562385 CGGGGTAAGAGATTGGATGATATCTTCAATTTGCCCCATGATCGGGGTAAGAGATTGGATGGTGG
61 TAGGGTAAGAGATT-G-TG-TGTCTTCAATCTGCCCCATGATTAGGGTAAGAGATTGG-T--TGT
* * * * * *
37562450 CTTCAATTTTCCCCTCTTGACTAGGGGTAAAAGATTGAAAG-GTGGCTTCAATCTGCCCCTTTTG
1 CTTCAA-TCTGCCCTCTAGATTA-GGGTAAAAGATTG---GTGTGTCTTCAATCTG-CCC-TATG
* * * * * * *
37562514 ATTAGGGGTAAAAGATTGGACAGTGGCTTCAATCTGCCCCTCCTAAATAGGAGTAAAAGATTGGA
59 ATTA-GGGTAAGAGATT-G--TGTGTCTTCAATCTG-CCC-CATGATTAGG-GTAAGAGATT-G-
* *
37562579 CGATGG
115 -GTTGT
* * * * * * *
37562585 CTTCAATCTGCCCTCTTGATTAGAGGTAAAATATTGGATGGAGGCTTCAATATTCCCCTCTTGAT
1 CTTCAATCTGCCCTCTAGATTAG-GGTAAAAGATTGG-T-GTGTCTTCAAT-CTGCCCT-ATGAT
* * * ** * *
37562650 TAAGGGTAAAAGATTGGATGATGTTTTCAATGTGCCCCATGATCGGGGTAAGAGATTGGATGA
61 T-AGGGTAAGAGATT-G-TG-TGTCTTCAATCTGCCCCATGATTAGGGTAAGAGATTGGTTGT
* * ** ** * * * * * *
37562713 CATCAATTTGCCCAAT-GATCGGGGTAAGAGATTGACTAATGTCTTCAATCTGTCCTCTGGTTAG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTG-GT-GTGTCTTCAATCTGCCCTATGATTAG
* * * * * * ** * * *
37562777 GGTAAAAGATTG-GATGGCTTCATTCTGCTCTATGGTCGGGGTGATAGATTGGTGTAT
64 GGTAAGAGATTGTG-TGTCTTCAATCTGCCCCATGATTAGGGTAAGAGATTGGT-TGT
* * * * *
37562834 CTTTAATCTACCTTCT-GATTAGGGTAAAAGATTGGTGTGTCTTCAATCTGTCCTTTGATTAGGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGTGTGTCTTCAATCTGCCCTATGATTAGGG
* * *
37562898 TAAGAGATCGATGTGTCTTCAATCTGCCCTC-TGATTAGGGTAAAAGATTGGATG-
66 TAAGAGATTG-TGTGTCTTCAATCTGCCC-CATGATTAGGGTAAGAGATTGGTTGT
* * *
37562952 CTTCAATCTGTCC-CAAGATTAGGGTAAAAGATTGGTGTGTCTTCAATCTGCCCTCTGA-TAGGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGTGTGTCTTCAATCTGCCCTATGATTAGGG
* * **
37563015 TAAAAGATTG-GATG-CTTCAATCTACCCCATGATCGGGGTAAGAGATTGGTGTGT
66 TAAGAGATTGTG-TGTCTTCAATCTGCCCCATGATTAGGGTAAGAGATTGGT-TGT
* *
37563069 CTTCAATCAGCCCTCTA-ATTAGGGTAAAAGATTGGTGTGTCTTCAATTTGCCCTATGATTAGGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGTGTGTCTTCAATCTGCCCTATGATTAGGG
* * * * * *
37563133 TAAAAGATTG-GATG-CTTCAATGC-GCCCCAAGATTAGGTTAAAAGAATGTTGTGT
66 TAAGAGATTGTG-TGTCTTCAAT-CTGCCCCATGATTAGGGTAAGAGATTGGT-TGT
* * * * *
37563187 ATTCAATATGCCCTCTA-ATTAGGGTAAAAGATTGG-ATG-CTTCAATCTGCCCCATGA-TCGAG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGTGTGTCTTCAATCTGCCCTATGATTAG-G
* * *
37563248 CTAAGAGATTGGTGTGTCTTGAATCTGCCCTC-TGATTAGGGTAAGAGATTGGTTTGC
65 GTAAGAGATT-GTGTGTCTTCAATCTGCCC-CATGATTAGGGTAAGAGATTGG-TTGT
* * * * *
37563305 CTTCAATCTGCCCT-TTGATTAGGGTAAAATATTAGTGTGTCTTCAATCTTCCCTCTGATTAGGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGTGTGTCTTCAATCTGCCCTATGATTAGGG
* * *
37563369 TAAGAGATTGGTGTGTCTTCAGTCTACCCCATGATTGGGGTAAGAGATTGGTGTGT
66 TAAGAGATT-GTGTGTCTTCAATCTGCCCCATGATTAGGGTAAGAGATTGGT-TGT
37563425 CTT
1 CTT
37563428 TGCTTTGCTT
Statistics
Matches: 769, Mismatches: 157, Indels: 111
0.74 0.15 0.11
Matches are distributed among these distances:
114 1 0.00
115 32 0.04
116 29 0.04
117 71 0.09
118 188 0.24
119 41 0.05
120 126 0.16
121 28 0.04
122 1 0.00
123 13 0.02
124 4 0.01
125 5 0.01
126 33 0.04
127 17 0.02
128 21 0.03
129 10 0.01
130 1 0.00
131 15 0.02
132 29 0.04
133 10 0.01
134 72 0.09
135 20 0.03
136 1 0.00
138 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (119 bp):
CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGTGTGTCTTCAATCTGCCCTATGATTAGGG
TAAGAGATTGTGTGTCTTCAATCTGCCCCATGATTAGGGTAAGAGATTGGTTGT
Found at i:37562991 original size:78 final size:79
Alignment explanation
Indices: 37562323--37563419 Score: 590
Period size: 78 Copynumber: 13.4 Consensus size: 79
37562313 GAGATGGTAG
* * * * **
37562323 CTTCAATCTGCCTCCCTTGATTTAAGGGTAAAAGATTGGATGGCTTCGATCTG-CCTCATGGTCG
1 CTTCAATCTGCC-CTC-TGA-TT-AGGGTAAAAGATTGGATGTCTTCAATCTGTCC-CATGATTA
* *
37562387 GGGTAAGAGATTGGATGATAT
61 GGGTAAAAGATTGG-TG-TGT
* ** * * * *
37562408 CTTCAATTTGCCC-CATGATCGGGGTAAGAGATTGGATGGTGGCTTCAAT-TTTCCCCTCTTGAC
1 CTTCAATCTGCCCTC-TGATTAGGGTAAAAGATTGGAT-GT--CTTCAATCTGT--CC-CATGAT
*
37562471 TAGGGGTAAAAGATTGAAAG-GTGG
59 TA-GGGTAAAAGATTG---GTGTGT
* * * * *
37562495 CTTCAATCTGCCCCTTTTGATTAGGGGTAAAAGATTGGACAGTGGCTTCAATCTGCCCCTCCTAA
1 CTTCAATCTG-CCC-TCTGATTA-GGGTAAAAGATTGG--A-TGTCTTCAATCTG-TCC-CATGA
* * *
37562560 ATAGGAGTAAAAGATTGGACGATGG
58 TTAGG-GTAAAAGATTGG-TG-TGT
* * * *
37562585 CTTCAATCTGCCCTCTTGATTAGAGGTAAAATATTGGATGGAGGCTTCAATAT-TCCCCTCTTGA
1 CTTCAATCTGCCCTC-TGATTAG-GGTAAAAGATTGGAT---GTCTTCAATCTGT--CC-CATGA
37562649 TTAAGGGTAAAAGATTGGATGATGT
58 TT-AGGGTAAAAGATTGG-TG-TGT
* * ** * * * * **
37562674 TTTCAATGTGCCC-CATGATCGGGGTAAGAGATTGGATGACATCAATTTG-CCCAATGATCGGGG
1 CTTCAATCTGCCCTC-TGATTAGGGTAAAAGATTGGATGTCTTCAATCTGTCCC-ATGATTAGGG
* * *
37562737 TAAGAGATTGACTAATGT
64 TAAAAGATTG-GT-GTGT
* * * * * * **
37562755 CTTCAATCTGTCCTCTGGTTAGGGTAAAAGATTGGATGGCTTCATTCTG-CTCTATGGTCGGGGT
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGATGTCTTCAATCTGTC-CCATGATTAGGGT
* * *
37562819 GATAGATTGGTGTAT
65 AAAAGATTGGTGTGT
* * * * **
37562834 CTTTAATCTACCTTCTGATTAGGGTAAAAGATTGGTGTGTCTTCAATCTGTCCTTTGATTAGGGT
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGG-ATGTCTTCAATCTGTCCCATGATTAGGGT
* * *
37562899 AAGAGATCGATGTGT
65 AAAAGATTGGTGTGT
*
37562914 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGATG-CTTCAATCTGTCCCAAGATTAGGGTA
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGATGTCTTCAATCTGTCCCATGATTAGGGTA
37562978 AAAGATTGGTGTGT
66 AAAGATTGGTGTGT
** **
37562992 CTTCAATCTGCCCTCTGA-TAGGGTAAAAGATTGGATG-CTTCAATCTACCCCATGATCGGGGTA
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGATGTCTTCAATCTGTCCCATGATTAGGGTA
*
37563055 AGAGATTGGTGTGT
66 AAAGATTGGTGTGT
* * * *
37563069 CTTCAATCAGCCCTCTAATTAGGGTAAAAGATTGGTGTGTCTTCAATTTG-CCCTATGATTAGGG
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGG-ATGTCTTCAATCTGTCCC-ATGATTAGGG
*
37563133 TAAAAGATTGG-ATG-
64 TAAAAGATTGGTGTGT
* * * * * * *
37563147 CTTCAATGC-GCCC-CAAGATTAGGTTAAAAGAATGTTG-TGTATTCAATATG-CCCTCTAATTA
1 CTTCAAT-CTGCCCTC-TGATTAGGGTAAAAG-AT-TGGATGTCTTCAATCTGTCCC-ATGATTA
*
37563208 GGGTAAAAGATTGG-ATG-
61 GGGTAAAAGATTGGTGTGT
* * * * * *
37563225 CTTCAATCTGCCC-CATGA-TCGAGCTAAGAGATTGGTGTGTCTTGAATCTG-CCCTCTGATTAG
1 CTTCAATCTGCCCTC-TGATTAG-GGTAAAAGATTGG-ATGTCTTCAATCTGTCCC-ATGATTAG
* * *
37563287 GGTAAGAGATTGGTTTGC
62 GGTAAAAGATTGGTGTGT
* * *
37563305 CTTCAATCTGCCCTTTGATTAGGGTAAAATATTAGTG-TGTCTTCAATCT-TCCCTCTGATTAGG
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATT-G-GATGTCTTCAATCTGTCCC-ATGATTAGG
*
37563368 GTAAGAGATTGGTGTGT
63 GTAAAAGATTGGTGTGT
* * * *
37563385 CTTCAGTCTACCC-CATGATTGGGGTAAGAGATTGG
1 CTTCAATCTGCCCTC-TGATTAGGGTAAAAGATTGG
37563420 TGTGTCTTTG
Statistics
Matches: 808, Mismatches: 145, Indels: 125
0.75 0.13 0.12
Matches are distributed among these distances:
76 2 0.00
77 75 0.09
78 183 0.23
79 47 0.06
80 180 0.22
81 90 0.11
82 11 0.01
83 5 0.01
84 15 0.02
85 11 0.01
86 7 0.01
87 37 0.05
88 12 0.01
89 73 0.09
90 56 0.07
91 1 0.00
92 2 0.00
93 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (79 bp):
CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGATGTCTTCAATCTGTCCCATGATTAGGGTA
AAAGATTGGTGTGT
Found at i:37564628 original size:15 final size:14
Alignment explanation
Indices: 37564605--37564665 Score: 63
Period size: 14 Copynumber: 4.4 Consensus size: 14
37564595 CGACCTCTCC
37564605 TTTTTCTTTCTTCT
1 TTTTTCTTTCTTCT
*
37564619 TTTTTCCTTTTTTCT
1 TTTTT-CTTTCTTCT
*
37564634 TTTTTTTTTCTT-T
1 TTTTTCTTTCTTCT
*
37564647 CTTTTCTTCTCTT-T
1 TTTTTCTT-TCTTCT
37564661 TTTTT
1 TTTTT
37564666 GGGTGAAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
13 7 0.18
14 19 0.49
15 13 0.33
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTCTTTCTTCT
Found at i:37564647 original size:23 final size:21
Alignment explanation
Indices: 37564605--37564665 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
37564595 CGACCTCTCC
* *
37564605 TTTTTCTTTCTTCTTTTTTCCT
1 TTTTTCTTT-TTTTTTTTTTCT
37564627 TTTTTCTTTTTTTTTTCTTTCT
1 TTTTTCTTTTTTTTTT-TTTCT
*
37564649 TTTCTTCTCTTTTTTTT
1 TTT-TTCTTTTTTTTTT
37564666 GGGTGAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 6 0.18
22 16 0.47
23 12 0.35
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTTCTTTTTTTTTTTTTCT
Found at i:37572209 original size:36 final size:36
Alignment explanation
Indices: 37572155--37572227 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 36
37572145 TCCACTGGGA
*
37572155 CTTCGGCCTCGTCTTCATGTGCACATC-AGGGTTGAT
1 CTTCGGCCTCGTCCTCATGTGCACATCGA-GGTTGAT
37572191 CTTCGGCC-CTGTCCTCATGTGCACATCGAGGTTGAT
1 CTTCGGCCTC-GTCCTCATGTGCACATCGAGGTTGAT
37572227 C
1 C
37572228 GCTGACCAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
35 1 0.03
36 32 0.94
37 1 0.03
ACGTcount: A:0.14, C:0.30, G:0.25, T:0.32
Consensus pattern (36 bp):
CTTCGGCCTCGTCCTCATGTGCACATCGAGGTTGAT
Found at i:37574178 original size:8 final size:8
Alignment explanation
Indices: 37574167--37574193 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
37574157 AACGGATTAA
37574167 AATTAAAT
1 AATTAAAT
37574175 AATTAAAT
1 AATTAAAT
37574183 AATTAAAT
1 AATTAAAT
37574191 AAT
1 AAT
37574194 ATTTTCTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
AATTAAAT
Found at i:37578972 original size:21 final size:21
Alignment explanation
Indices: 37578946--37578985 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
37578936 TCATTACTAT
37578946 TAAAATA-ATAAAATATAATTG
1 TAAAATATAT-AAATATAATTG
*
37578967 TAAAATGTATAAATATAAT
1 TAAAATATATAAATATAAT
37578986 ATTTTTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (21 bp):
TAAAATATATAAATATAATTG
Found at i:37580066 original size:24 final size:21
Alignment explanation
Indices: 37580019--37580071 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
37580009 CTTGTAGCCT
* *
37580019 CTGCTTCCTTCGCTTGCCTCG
1 CTGCTGCCTCCGCTTGCCTCG
37580040 CTGCTGCCTCCGCTTGCCTCG
1 CTGCTGCCTCCGCTTGCCTCG
*
37580061 TTGCTGCCTCC
1 CTGCTGCCTCC
37580072 ACTTTAAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.00, C:0.45, G:0.21, T:0.34
Consensus pattern (21 bp):
CTGCTGCCTCCGCTTGCCTCG
Found at i:37580173 original size:66 final size:66
Alignment explanation
Indices: 37580067--37580214 Score: 226
Period size: 66 Copynumber: 2.2 Consensus size: 66
37580057 CTCGTTGCTG
* *
37580067 CCTCCACTTTAAGTTGTATGTGGAGTTCTTCATATTTTTTTTGAGACTCTGCTTCTCTCACTGCA
1 CCTCCTCTTTAAGTTGTATGTGGAGTTCATCATATTTTTTTTGAGACTCTGCTTCTCTCACTGCA
37580132 A
66 A
* * **
37580133 CCTCCTCTTTAAGTTTTA-GATGGAGTTCATCATATTTTTTTTGAGCCTCTGCTTCTCTCGTTGC
1 CCTCCTCTTTAAGTTGTATG-TGGAGTTCATCATATTTTTTTTGAGACTCTGCTTCTCTCACTGC
37580197 AA
65 AA
37580199 CCTCCTCTTTAAGTTG
1 CCTCCTCTTTAAGTTG
37580215 AGCAATTTGC
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
65 1 0.01
66 73 0.99
ACGTcount: A:0.17, C:0.24, G:0.15, T:0.45
Consensus pattern (66 bp):
CCTCCTCTTTAAGTTGTATGTGGAGTTCATCATATTTTTTTTGAGACTCTGCTTCTCTCACTGCA
A
Found at i:37583085 original size:41 final size:41
Alignment explanation
Indices: 37582945--37583278 Score: 257
Period size: 41 Copynumber: 8.1 Consensus size: 41
37582935 TTGAGTTAAA
* * * *
37582945 GCGCTTGAATGAAAGCGCCGCTAAATGATCCTACCTTTAGTG
1 GCGCTTGAGTTAAAGCGCCGCT-AATGACCCTACCTTTAGCG
**** * * * *
37582987 GCGCTTTCCCTCAAGCGCCGCTAATGACCCGACCTTTTCGTG
1 GCGCTTGAGTTAAAGCGCCGCTAATGACCCTACC-TTTAGCG
* ** * *
37583029 GCGCTTCAGGGAAAGCGCCGCTAATGATCATACCTTTAGCG
1 GCGCTTGAGTTAAAGCGCCGCTAATGACCCTACCTTTAGCG
* *
37583070 GCGCTTGAGTTAAAGCGCCGCTAATTA-CCTGGCCTTTAGCG
1 GCGCTTGAGTTAAAGCGCCGCTAATGACCCT-ACCTTTAGCG
** * *
37583111 GCGCTTGAGGGAAAGCGCCGCTAATTACCCCACCTTTAGCG
1 GCGCTTGAGTTAAAGCGCCGCTAATGACCCTACCTTTAGCG
* * *
37583152 GCGCATTAGAG--AAAGCGCCGCTAATGA-CTTGAACTTTAGCA
1 GCGC-TT-GAGTTAAAGCGCCGCTAATGACCCT-ACCTTTAGCG
* * *
37583193 GCGCTTGTGATAAAGCGCCGCTAATGACCCCACCTTTAGCG
1 GCGCTTGAGTTAAAGCGCCGCTAATGACCCTACCTTTAGCG
* ** ** *
37583234 GTGCTTTTGTT-AAGCGCCGCTAATG-CTTTACCTTTTGCG
1 GCGCTTGAGTTAAAGCGCCGCTAATGACCCTACCTTTAGCG
37583273 GCGCTT
1 GCGCTT
37583279 TGTTTCCAAA
Statistics
Matches: 235, Mismatches: 48, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
39 17 0.07
40 19 0.08
41 144 0.61
42 52 0.22
43 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (41 bp):
GCGCTTGAGTTAAAGCGCCGCTAATGACCCTACCTTTAGCG
Found at i:37583150 original size:82 final size:82
Alignment explanation
Indices: 37582945--37583278 Score: 316
Period size: 82 Copynumber: 4.1 Consensus size: 82
37582935 TTGAGTTAAA
** * * * **** *
37582945 GCGCTTGAATGAAAGCGCCGCTAAATGATCCTACCTTTAGTGGCGCTTTCCCTCAAGCGCCGCTA
1 GCGCTTGAGGGAAAGCGCCGCT-AATGACCCCACCTTTAGCGGCGCTTGAGTTAAAGCGCCGCTA
* * *
37583010 ATGACCCGACCTTTTCGTG
65 ATGACCTGACC-TTTAGCG
* * **
37583029 GCGCTTCAGGGAAAGCGCCGCTAATGATCATACCTTTAGCGGCGCTTGAGTTAAAGCGCCGCTAA
1 GCGCTTGAGGGAAAGCGCCGCTAATGACCCCACCTTTAGCGGCGCTTGAGTTAAAGCGCCGCTAA
* *
37583094 TTACCTGGCCTTTAGCG
66 TGACCTGACCTTTAGCG
*
37583111 GCGCTTGAGGGAAAGCGCCGCTAATTACCCCACCTTTAGCGGCGCATTAGAG--AAAGCGCCGCT
1 GCGCTTGAGGGAAAGCGCCGCTAATGACCCCACCTTTAGCGGCGC-TT-GAGTTAAAGCGCCGCT
* * *
37583174 AATGACTTGAACTTTAGCA
64 AATGACCTGACCTTTAGCG
* ** * **
37583193 GCGCTTGTGATAAAGCGCCGCTAATGACCCCACCTTTAGCGGTGCTTTTGTT-AAGCGCCGCTAA
1 GCGCTTGAGGGAAAGCGCCGCTAATGACCCCACCTTTAGCGGCGCTTGAGTTAAAGCGCCGCTAA
* * *
37583257 TG-CTTTACCTTTTGCG
66 TGACCTGACCTTTAGCG
37583273 GCGCTT
1 GCGCTT
37583279 TGTTTCCAAA
Statistics
Matches: 210, Mismatches: 36, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
80 17 0.08
81 16 0.08
82 110 0.52
83 45 0.21
84 22 0.10
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (82 bp):
GCGCTTGAGGGAAAGCGCCGCTAATGACCCCACCTTTAGCGGCGCTTGAGTTAAAGCGCCGCTAA
TGACCTGACCTTTAGCG
Found at i:37583229 original size:123 final size:124
Alignment explanation
Indices: 37582944--37583239 Score: 312
Period size: 123 Copynumber: 2.4 Consensus size: 124
37582934 ATTGAGTTAA
* * * ******
37582944 AGCGCTTGA-ATGAAAGCGCCGCTAAATGATCCTACCTTTAGTGGCGCTTTCCCTCAAGCGCCGC
1 AGCGCTTGAGAT-AAAGCGCCGCT-AATGACCCCACCTTTAGCGGCGCTTGAGGGAAAGCGCCGC
* * * * *
37583008 TAATGACCCGACCTTTTCGTGGCGCTTCAGGGAAAGCGCCGCTAATGATCATACCTTTAGC
64 TAATGACCCCACCTTTTAGCGGCGCTTCAGAGAAAGCGCCGCTAATGATCATAACTTTAGC
* * * ***
37583069 GGCGCTTGAGTTAAAGCGCCGCTAATTACCTGGCCTTTAGCGGCGCTTGAGGGAAAGCGCCGCTA
1 AGCGCTTGAGATAAAGCGCCGCTAATGACCCCACCTTTAGCGGCGCTTGAGGGAAAGCGCCGCTA
* *
37583134 ATTACCCCACC-TTTAGCGGCGCATT-AGAGAAAGCGCCGCTAATGA-CTTGAACTTTAGC
66 ATGACCCCACCTTTTAGCGGCGC-TTCAGAGAAAGCGCCGCTAATGATCAT-AACTTTAGC
* *
37583192 AGCGCTTGTGATAAAGCGCCGCTAATGACCCCACCTTTAGCGGTGCTT
1 AGCGCTTGAGATAAAGCGCCGCTAATGACCCCACCTTTAGCGGCGCTT
37583240 TTGTTAAGCG
Statistics
Matches: 139, Mismatches: 29, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
122 2 0.01
123 76 0.55
124 41 0.29
125 19 0.14
126 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (124 bp):
AGCGCTTGAGATAAAGCGCCGCTAATGACCCCACCTTTAGCGGCGCTTGAGGGAAAGCGCCGCTA
ATGACCCCACCTTTTAGCGGCGCTTCAGAGAAAGCGCCGCTAATGATCATAACTTTAGC
Found at i:37583619 original size:42 final size:40
Alignment explanation
Indices: 37583571--37583998 Score: 301
Period size: 41 Copynumber: 10.4 Consensus size: 40
37583561 GCTAATTCAC
* *
37583571 ACCTTTAGCGACGCTTATTAGAAAAGCGCCGCGAATGACCTG
1 ACCTTTAGCGGCGCTTA--AGAAAAGCGCCGCTAATGACCTG
* * * *
37583613 ACCTTTAGCGGCACTTTATATATAAGCGCCGCTAATGACCCG
1 ACCTTTAGCGGCGC-TTA-AGAAAAGCGCCGCTAATGACCTG
* * * *
37583655 AACTTTAGCGGCACTTGAGGAAAAGCGCCGCTAATGACCCG
1 ACCTTTAGCGGCGCTT-AAGAAAAGCGCCGCTAATGACCTG
*****
37583696 ACCTTTTAGCGGCGCTTTCCCTCAAGCGCCGCTAATGA-CTCG
1 ACC-TTTAGCGGCGC-TTAAGAAAAGCGCCGCTAATGACCT-G
* * * * *
37583738 ACCTTTTCGTGGCGCTTCAGGGAAAGCGCCGCTAATGATCAT-
1 ACC-TTTAGCGGCGCTT-AAGAAAAGCGCCGCTAATGA-CCTG
* *
37583780 ACCTTTAGCGGCGCTTAAGTTAAAGCGCCGCTAATTACCT-
1 ACCTTTAGCGGCGCTTAAG-AAAAGCGCCGCTAATGACCTG
* * *
37583820 ATCCTTTAGCGGCGCTTGAGGGAAAGCGCCGCTAATTACCCT-
1 A-CCTTTAGCGGCGCTT-AAGAAAAGCGCCGCTAATGA-CCTG
* *
37583862 ACCTTTAGCGGCGCATT-AGAGAAAGCACCGCTAATGACTTG
1 ACCTTTAGCGGCGC-TTAAGA-AAAGCGCCGCTAATGACCTG
* ** **
37583903 AACTTTAGCGGCGCTTGTGATAAAGCGCCGCTAATGACCCC
1 ACCTTTAGCGGCGCTTAAGA-AAAGCGCCGCTAATGACCTG
** ** * *
37583944 ACCTTTAGCGGCGCTTTTGTTAAGCGCCGCTAATG-CTTT
1 ACCTTTAGCGGCGCTTAAGAAAAGCGCCGCTAATGACCTG
*
37583983 ACCTTTTGCGGCGCTT
1 ACCTTTAGCGGCGCTT
37583999 TGTTTCCAAA
Statistics
Matches: 316, Mismatches: 54, Indels: 35
0.78 0.13 0.09
Matches are distributed among these distances:
39 16 0.05
40 24 0.08
41 159 0.50
42 111 0.35
43 5 0.02
44 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACCTTTAGCGGCGCTTAAGAAAAGCGCCGCTAATGACCTG
Found at i:37583693 original size:41 final size:41
Alignment explanation
Indices: 37583591--37583959 Score: 316
Period size: 41 Copynumber: 8.9 Consensus size: 41
37583581 ACGCTTATTA
* * * *
37583591 GAAAAGCGCCGCGAATGACCTGACCTTTAGCGGCACTTTA-
1 GAAAAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTGAG
* * *
37583631 TATATAAGCGCCGCTAATGACCCGAACTTTAGCGGCACTTGAG
1 GA-A-AAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTGAG
***
37583674 GAAAAGCGCCGCTAATGACCCGACCTTTTAGCGGCGCTTTCC
1 GAAAAGCGCCGCTAATGACCCGACC-TTTAGCGGCGCTTGAG
*** * * * *
37583716 CTCAAGCGCCGCTAATGACTCGACCTTTTCGTGGCGCTTCAG
1 GAAAAGCGCCGCTAATGACCCGACC-TTTAGCGGCGCTTGAG
* * ** *
37583758 GGAAAGCGCCGCTAATGATCATACCTTTAGCGGCGCTTAAG
1 GAAAAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTGAG
** * *
37583799 TTAAAGCGCCGCTAATTA-CCTATCCTTTAGCGGCGCTTGAG
1 GAAAAGCGCCGCTAATGACCCGA-CCTTTAGCGGCGCTTGAG
* * *
37583840 GGAAAGCGCCGCTAATTACCCTACCTTTAGCGGCGCATT-A-
1 GAAAAGCGCCGCTAATGACCCGACCTTTAGCGGCGC-TTGAG
* ** * *
37583880 GAGAAAGCACCGCTAATGACTTGAACTTTAGCGGCGCTTG-T
1 GA-AAAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTGAG
*
37583921 GATAAAGCGCCGCTAATGACCCCACCTTTAGCGGCGCTT
1 GA-AAAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTT
37583960 TTGTTAAGCG
Statistics
Matches: 269, Mismatches: 50, Indels: 19
0.80 0.15 0.06
Matches are distributed among these distances:
40 7 0.03
41 158 0.59
42 103 0.38
43 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (41 bp):
GAAAAGCGCCGCTAATGACCCGACCTTTAGCGGCGCTTGAG
Found at i:37583866 original size:82 final size:81
Alignment explanation
Indices: 37583593--37583978 Score: 400
Period size: 82 Copynumber: 4.7 Consensus size: 81
37583583 GCTTATTAGA
* *
37583593 AAAGCGCCGCGAATGA-CCTGACCTTTAGCGGCACTTTA-TATATAAGCGCCGCTAATGACCCGA
1 AAAGCGCCGCTAATGACCCT-ACCTTTAGCGGCGCTTTAGT-TA-AAGCGCCGCTAATGA-CCGA
* *
37583656 ACTTTAGCGGCACTTGAGGA
62 ACTTTAGCGGCGCTTGAGGG
* *** * *
37583676 AAAGCGCCGCTAATGACCCGACCTTTTAGCGGCGCTTTCCCTCAAGCGCCGCTAATGACTCGACC
1 AAAGCGCCGCTAATGACCCTACC-TTTAGCGGCGCTTTAGTTAAAGCGCCGCTAATGAC-CGAAC
* * *
37583741 TTTTCGTGGCGCTTCAGGG
64 -TTTAGCGGCGCTTGAGGG
* * * * * *
37583760 AAAGCGCCGCTAATGATCATACCTTTAGCGGCGCTTAAGTTAAAGCGCCGCTAATTACCTATCCT
1 AAAGCGCCGCTAATGACCCTACCTTTAGCGGCGCTTTAGTTAAAGCGCCGCTAATGACCGA-ACT
37583825 TTAGCGGCGCTTGAGGG
65 TTAGCGGCGCTTGAGGG
* * ** * *
37583842 AAAGCGCCGCTAATTACCCTACCTTTAGCGGCGCATTAGAGAAAGCACCGCTAATGACTTGAACT
1 AAAGCGCCGCTAATGACCCTACCTTTAGCGGCGCTTTAGTTAAAGCGCCGCTAATGAC-CGAACT
* **
37583907 TTAGCGGCGCTTGTGAT
65 TTAGCGGCGCTTGAGGG
* *
37583924 AAAGCGCCGCTAATGACCCCACCTTTAGCGGCGCTTTTGTT-AAGCGCCGCTAATG
1 AAAGCGCCGCTAATGACCCTACCTTTAGCGGCGCTTTAGTTAAAGCGCCGCTAATG
37583979 CTTTACCTTT
Statistics
Matches: 249, Mismatches: 47, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
81 13 0.05
82 118 0.47
83 69 0.28
84 49 0.20
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
AAAGCGCCGCTAATGACCCTACCTTTAGCGGCGCTTTAGTTAAAGCGCCGCTAATGACCGAACTT
TAGCGGCGCTTGAGGG
Done.