Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 126 of 171
Found at i:40073188 original size:21 final size:23
Alignment explanation
Indices: 40073164--40073207 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
40073154 TAATGCGTTA
40073164 TATGC-TAAAAGTTAA-GTGATT
1 TATGCTTAAAAGTTAATGTGATT
*
40073185 TATGCTTAAATGTTAATGTGATT
1 TATGCTTAAAAGTTAATGTGATT
40073208 AATGTGTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 9 0.45
23 6 0.30
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (23 bp):
TATGCTTAAAAGTTAATGTGATT
Found at i:40074861 original size:12 final size:12
Alignment explanation
Indices: 40074844--40074876 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
40074834 ACAATTAACA
40074844 CTTTCACAATAG
1 CTTTCACAATAG
40074856 CTTTCACAATAG
1 CTTTCACAATAG
*
40074868 CTATCACAA
1 CTTTCACAA
40074877 ACATATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.30
Consensus pattern (12 bp):
CTTTCACAATAG
Found at i:40077628 original size:15 final size:15
Alignment explanation
Indices: 40077604--40077646 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
40077594 TTTGTTACCA
*
40077604 TTTTTT-TTTTCCTT
1 TTTTTTATTTTCATT
40077618 TTTTTTATTTT-ATT
1 TTTTTTATTTTCATT
40077632 TTTTTTAATTTTCAT
1 TTTTTT-ATTTTCAT
40077647 AAACTACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 14 0.56
15 9 0.36
16 2 0.08
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTTATTTTCATT
Found at i:40077941 original size:31 final size:31
Alignment explanation
Indices: 40077903--40077970 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
40077893 AAATGTTACG
*
40077903 TTTTAGTCACTTACGCTATTATGTTGTAACA
1 TTTTAGTCACTTACGCTATCATGTTGTAACA
* * *
40077934 TTTTAGTCACTTGCGTTATCATGTTGTAATA
1 TTTTAGTCACTTACGCTATCATGTTGTAACA
40077965 TTTTAG
1 TTTTAG
40077971 CCATTGAGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.24, C:0.13, G:0.15, T:0.49
Consensus pattern (31 bp):
TTTTAGTCACTTACGCTATCATGTTGTAACA
Found at i:40079028 original size:29 final size:31
Alignment explanation
Indices: 40078980--40079056 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
40078970 TTTGTGAATC
* *
40078980 AAATAAAAATTTCATGTATAA-AAT-TACATA
1 AAATCAAAATTT-ATGTATAACAATGTAAATA
* *
40079010 AAATCAAAATTTATGTATAACATTGTAAATT
1 AAATCAAAATTTATGTATAACAATGTAAATA
*
40079041 AAATCAAAATTCATGT
1 AAATCAAAATTTATGT
40079057 GTAGTTTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
29 8 0.20
30 13 0.32
31 19 0.47
ACGTcount: A:0.52, C:0.08, G:0.05, T:0.35
Consensus pattern (31 bp):
AAATCAAAATTTATGTATAACAATGTAAATA
Found at i:40079048 original size:31 final size:30
Alignment explanation
Indices: 40078971--40079056 Score: 84
Period size: 31 Copynumber: 2.8 Consensus size: 30
40078961 TTTTAGTGGT
* * *
40078971 TTGTGAATCAAATAAAAATTTCATGTATAAA
1 TTGTAAATAAAATCAAAATTT-ATGTATAAA
* *
40079002 AT-TACATAAAATCAAAATTTATGTATAACA
1 TTGTAAATAAAATCAAAATTTATGTATAA-A
* *
40079032 TTGTAAATTAAATCAAAATTCATGT
1 TTGTAAATAAAATCAAAATTTATGT
40079057 GTAGTTTTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
29 8 0.18
30 16 0.36
31 20 0.45
ACGTcount: A:0.49, C:0.08, G:0.07, T:0.36
Consensus pattern (30 bp):
TTGTAAATAAAATCAAAATTTATGTATAAA
Found at i:40085720 original size:20 final size:20
Alignment explanation
Indices: 40085695--40085736 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
40085685 TATATATAAA
40085695 CATTCAAAAATAAAGAAAAT
1 CATTCAAAAATAAAGAAAAT
*
40085715 CATTCAAAAATAAAGAAGAT
1 CATTCAAAAATAAAGAAAAT
40085735 CA
1 CA
40085737 CCATTACTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.62, C:0.12, G:0.07, T:0.19
Consensus pattern (20 bp):
CATTCAAAAATAAAGAAAAT
Found at i:40085831 original size:17 final size:17
Alignment explanation
Indices: 40085811--40085845 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
40085801 TTTTTAGGTT
40085811 TTTTAAAATTT-TTAAAA
1 TTTT-AAATTTATTAAAA
40085828 TTTTAAATTTATTAAAA
1 TTTTAAATTTATTAAAA
40085845 T
1 T
40085846 AAATTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTTAAATTTATTAAAA
Found at i:40093954 original size:20 final size:20
Alignment explanation
Indices: 40093889--40093978 Score: 74
Period size: 20 Copynumber: 4.5 Consensus size: 20
40093879 GCCTAGAGCT
* *
40093889 ATTTTGACTTGTTTGAAAAAC
1 ATTTTGACTTGGTT-AAAATC
** **
40093910 ATTTTGAAGT-GTTAAAAAG
1 ATTTTGACTTGGTTAAAATC
* *
40093929 ATTTTGACTTGGTTCAAATT
1 ATTTTGACTTGGTTAAAATC
*
40093949 ATTTTGACTTGTTTAAAATC
1 ATTTTGACTTGGTTAAAATC
*
40093969 ATTTTAACTT
1 ATTTTGACTT
40093979 CATTTTAAAA
Statistics
Matches: 55, Mismatches: 13, Indels: 3
0.77 0.18 0.04
Matches are distributed among these distances:
19 13 0.24
20 34 0.62
21 8 0.15
ACGTcount: A:0.32, C:0.08, G:0.13, T:0.47
Consensus pattern (20 bp):
ATTTTGACTTGGTTAAAATC
Found at i:40104963 original size:21 final size:21
Alignment explanation
Indices: 40104939--40104995 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
40104929 CAGTGTAGAC
* *
40104939 TTCTACTGATATAAGTGACAA
1 TTCTACTGATACAAGAGACAA
* **
40104960 TTCTACCGATACAAGAGACTC
1 TTCTACTGATACAAGAGACAA
*
40104981 TTCTACTGAAACAAG
1 TTCTACTGATACAAG
40104996 TCATACATCT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (21 bp):
TTCTACTGATACAAGAGACAA
Found at i:40105075 original size:113 final size:113
Alignment explanation
Indices: 40104937--40105282 Score: 593
Period size: 113 Copynumber: 3.1 Consensus size: 113
40104927 AACAGTGTAG
* *
40104937 ACTTCTACTGATATAAGTGACAATTCTACCGATACAAGAGACTCTTCTACTGAAACAAGTCATAC
1 ACTTCTACCGATATAAGTGACAATTCTACCGATACAAGAGACTCTTCTACCGAAACAAGTCATAC
*
40105002 ATCTACCGATATTAAAAACTCCAGAGAGCTAAGAAGTTTAACCCTACA
66 ATCTACCGATACTAAAAACTCCAGAGAGCTAAGAAGTTTAACCCTACA
* *
40105050 ACTTCTACCGATATAAGTGATAATTCTACCGATACAAGCGACTCTTCTACCGAAACAAGTCATAC
1 ACTTCTACCGATATAAGTGACAATTCTACCGATACAAGAGACTCTTCTACCGAAACAAGTCATAC
* *
40105115 ATCTACCGATACTAAAAACTCCAAAGAGCTAAGAAGTTTAACCCTATA
66 ATCTACCGATACTAAAAACTCCAGAGAGCTAAGAAGTTTAACCCTACA
* * *
40105163 ACTTCTACCAATACAAGTGACAATTCTACCGATACAAGAGACTCTTCTACCGAAACAAGTCATAT
1 ACTTCTACCGATATAAGTGACAATTCTACCGATACAAGAGACTCTTCTACCGAAACAAGTCATAC
*
40105228 ATCCACCGATACTAAAAACTCCAGAGAGCTAAGAAGTTTAACCCTACA
66 ATCTACCGATACTAAAAACTCCAGAGAGCTAAGAAGTTTAACCCTACA
40105276 ACTTCTA
1 ACTTCTA
40105283 ATGATACAAG
Statistics
Matches: 218, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 218 1.00
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.25
Consensus pattern (113 bp):
ACTTCTACCGATATAAGTGACAATTCTACCGATACAAGAGACTCTTCTACCGAAACAAGTCATAC
ATCTACCGATACTAAAAACTCCAGAGAGCTAAGAAGTTTAACCCTACA
Found at i:40105097 original size:21 final size:21
Alignment explanation
Indices: 40105050--40105126 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
40105040 TAACCCTACA
* *
40105050 ACTTCTACCGATATAAGTGAT
1 ACTTCTACCGATACAAGCGAT
*
40105071 AATTCTACCGATACAAGCGACT
1 ACTTCTACCGATACAAGCGA-T
*
40105093 -CTTCTACCGAAACAAGTC-AT
1 ACTTCTACCGATACAAG-CGAT
*
40105113 ACATCTACCGATAC
1 ACTTCTACCGATAC
40105127 TAAAAACTCC
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.02
21 43 0.93
22 2 0.04
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.26
Consensus pattern (21 bp):
ACTTCTACCGATACAAGCGAT
Found at i:40105191 original size:21 final size:21
Alignment explanation
Indices: 40105165--40105222 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
40105155 ACCCTATAAC
40105165 TTCTACCAATACAAGTGACAA
1 TTCTACCAATACAAGTGACAA
* * **
40105186 TTCTACCGATACAAGAGACTC
1 TTCTACCAATACAAGTGACAA
40105207 TTCTACCGAA-ACAAGT
1 TTCTACC-AATACAAGT
40105223 CATATATCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
21 29 0.97
22 1 0.03
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.24
Consensus pattern (21 bp):
TTCTACCAATACAAGTGACAA
Found at i:40122214 original size:18 final size:19
Alignment explanation
Indices: 40122182--40122218 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
40122172 GGTAGGAATC
40122182 TTTTCCAAAACATGCATTG
1 TTTTCCAAAACATGCATTG
*
40122201 TTTT-CAAAATATGCATTG
1 TTTTCCAAAACATGCATTG
40122219 ACATGATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (19 bp):
TTTTCCAAAACATGCATTG
Found at i:40133356 original size:12 final size:13
Alignment explanation
Indices: 40133312--40133361 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
40133302 GCAAATATAA
*
40133312 TTTTTTTCTTCTT
1 TTTTTTTCTTCAT
*
40133325 TTTCTTTTCTTTAT
1 TTT-TTTTCTTCAT
40133339 TCTTTTTTC-TCAT
1 T-TTTTTTCTTCAT
40133352 TTTTTTTCTT
1 TTTTTTTCTT
40133362 TTTCAAGTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
12 7 0.23
13 8 0.26
14 14 0.45
15 2 0.06
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTTTCTTCAT
Found at i:40133360 original size:19 final size:18
Alignment explanation
Indices: 40133312--40133364 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 18
40133302 GCAAATATAA
*
40133312 TTTTTTTCTTCTTTTTCTT
1 TTTTTTTCTT-TTTTTCAT
40133331 TTCTTTATTCTTTTTTCTCAT
1 TT-TTT-TTCTTTTTT-TCAT
40133352 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
40133365 CAAGTGACTG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 10 0.33
20 10 0.33
21 10 0.33
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTTTCTTTTTTTCAT
Found at i:40133363 original size:18 final size:17
Alignment explanation
Indices: 40133312--40133365 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 17
40133302 GCAAATATAA
*
40133312 TTTTTTTCTTCTTTTTC
1 TTTTTTTATTCTTTTTC
40133329 TTTTCTTTATTCTTTTTTC
1 TTTT-TTTATTC-TTTTTC
40133348 TCATTTTTT-TTCTTTTTC
1 T--TTTTTTATTCTTTTTC
40133366 AAGTGACTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
17 4 0.12
18 12 0.38
19 10 0.31
20 3 0.09
21 3 0.09
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTTTTATTCTTTTTC
Found at i:40140177 original size:17 final size:18
Alignment explanation
Indices: 40140155--40140195 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
40140145 TTAGCTTTCA
40140155 TGCATTCTT-ATTGT-GCC
1 TGCATTCTTAATTGTCG-C
40140172 TGCATT-TTAATTGTCGC
1 TGCATTCTTAATTGTCGC
40140189 TGCATTC
1 TGCATTC
40140196 ATTTTAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 2 0.10
17 18 0.86
18 1 0.05
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (18 bp):
TGCATTCTTAATTGTCGC
Found at i:40146816 original size:114 final size:116
Alignment explanation
Indices: 40146690--40146918 Score: 354
Period size: 116 Copynumber: 2.0 Consensus size: 116
40146680 ATGGGTTTTG
* * *
40146690 TTTGATAGGTTAATTTTTAGGGTTTTATTTGTGATGTTAAGTTTCTGG-TTT-TTAATGGGTTGA
1 TTTGATAGGTTAAATTTTAGGGTTTTATTTGTGATGTTAACTTTCTGGTTTTCTTAATGGATTGA
* * *
40146753 TGGGTGTTCTAAGTTTGAATTTTTTTCTAATGAGTGTTCTAAGTTTGGATA
66 TGGGTGTTCTAAATATGAATTTTTTTATAATGAGTGTTCTAAGTTTGGATA
*
40146804 TTTGATATGTTAAATTTTAGGGTTTTATTTGTGATGTTAACTTTCTGGTTTTCTTAATGGATTGA
1 TTTGATAGGTTAAATTTTAGGGTTTTATTTGTGATGTTAACTTTCTGGTTTTCTTAATGGATTGA
* * *
40146869 TGGTTGTTCTAAATATGGATTTTTTTATAATGGGTGTTCTAAGTTTGGAT
66 TGGGTGTTCTAAATATGAATTTTTTTATAATGAGTGTTCTAAGTTTGGAT
40146919 TTCATTTGTA
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
114 45 0.44
115 3 0.03
116 55 0.53
ACGTcount: A:0.21, C:0.04, G:0.23, T:0.52
Consensus pattern (116 bp):
TTTGATAGGTTAAATTTTAGGGTTTTATTTGTGATGTTAACTTTCTGGTTTTCTTAATGGATTGA
TGGGTGTTCTAAATATGAATTTTTTTATAATGAGTGTTCTAAGTTTGGATA
Found at i:40147707 original size:24 final size:24
Alignment explanation
Indices: 40147674--40147748 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
40147664 AGAAATAATC
* *
40147674 TTTCAGTTAAACTCTGTGTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
* *
40147698 TTTCAATTAAGCTCTATTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
*
40147722 TTTCAATTAAACTTTGTTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
40147746 TTT
1 TTT
40147749 AAGTCAAACT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.56
Consensus pattern (24 bp):
TTTCAATTAAACTCTGTTTATTTG
Found at i:40149700 original size:24 final size:24
Alignment explanation
Indices: 40149672--40149734 Score: 99
Period size: 24 Copynumber: 2.6 Consensus size: 24
40149662 AGAAATAATC
40149672 TTTCAGTTAAACTCTGTTTATTTG
1 TTTCAGTTAAACTCTGTTTATTTG
*
40149696 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAGTTAAACTCTGTTTATTTG
* *
40149720 TTTAAGTCAAACTCT
1 TTTCAGTTAAACTCT
40149735 CATTAGTCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.25, C:0.14, G:0.10, T:0.51
Consensus pattern (24 bp):
TTTCAGTTAAACTCTGTTTATTTG
Found at i:40151046 original size:30 final size:30
Alignment explanation
Indices: 40151010--40151071 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
40151000 CAAATCTAAG
40151010 AACATCATTCATATTTCACCTTTGCTACAA
1 AACATCATTCATATTTCACCTTTGCTACAA
40151040 AACATCATTCATATTTCACCTTTGCTACAA
1 AACATCATTCATATTTCACCTTTGCTACAA
40151070 AA
1 AA
40151072 TGTGAACAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.35
Consensus pattern (30 bp):
AACATCATTCATATTTCACCTTTGCTACAA
Found at i:40152337 original size:24 final size:25
Alignment explanation
Indices: 40152267--40152337 Score: 83
Period size: 24 Copynumber: 2.8 Consensus size: 25
40152257 TTTTTTAAAT
* *
40152267 ATAATTATTTTT-ATTTAATATTTA
1 ATAATTATTTTTCTTTTATTATTTA
40152291 ATAATTATATTTATCTTTTATTA-TTA
1 ATAATTAT-TTT-TCTTTTATTATTTA
*
40152317 TTAATTATTTTTCTTTTATTA
1 ATAATTATTTTTCTTTTATTA
40152338 AATTTTAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
24 18 0.44
25 6 0.15
26 11 0.27
27 6 0.15
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (25 bp):
ATAATTATTTTTCTTTTATTATTTA
Found at i:40152368 original size:26 final size:26
Alignment explanation
Indices: 40152339--40152396 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
40152329 CTTTTATTAA
40152339 ATTTTAAAATATAAATAATT-TAATAT
1 ATTTTAAAATATAAA-AATTCTAATAT
* * *
40152365 ATTTTTAAATATTAAAATTCTAGTAT
1 ATTTTAAAATATAAAAATTCTAATAT
40152391 ATTTTA
1 ATTTTA
40152397 GTTTTTCATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (26 bp):
ATTTTAAAATATAAAAATTCTAATAT
Found at i:40152636 original size:2 final size:2
Alignment explanation
Indices: 40152617--40152653 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
40152607 ATTCATTCAC
* *
40152617 AT AT AT AA AT AT AA AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
40152654 GTCTCTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:40153904 original size:30 final size:30
Alignment explanation
Indices: 40153859--40153918 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
40153849 AGTCAACGAG
* *
40153859 CAACGGTCAACGAAAAAGTTAACGGTCAAT
1 CAACGATCAACGAAAAAGTCAACGGTCAAT
* *
40153889 CAACGATCAATGAAAAAGTCAATGGTCAAT
1 CAACGATCAACGAAAAAGTCAACGGTCAAT
40153919 AGTCAACTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.18
Consensus pattern (30 bp):
CAACGATCAACGAAAAAGTCAACGGTCAAT
Found at i:40153953 original size:18 final size:18
Alignment explanation
Indices: 40153932--40153972 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
40153922 CAACTGTCGA
*
40153932 TCAACAGGTCGGGTCGGG
1 TCAACAGGTCAGGTCGGG
* *
40153950 TCAACGGGTTAGGTCGGG
1 TCAACAGGTCAGGTCGGG
40153968 TCAAC
1 TCAAC
40153973 GGGTAGGGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.22, G:0.39, T:0.20
Consensus pattern (18 bp):
TCAACAGGTCAGGTCGGG
Found at i:40154709 original size:13 final size:13
Alignment explanation
Indices: 40154691--40154715 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40154681 CTAAAATTAC
40154691 AAATTAACCCCAA
1 AAATTAACCCCAA
40154704 AAATTAACCCCA
1 AAATTAACCCCA
40154716 TACTCAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (13 bp):
AAATTAACCCCAA
Found at i:40163003 original size:30 final size:31
Alignment explanation
Indices: 40162956--40163038 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
40162946 TCCTGAACTA
*
40162956 TCCAAAAATCATATTTTGACCCCTAAACTTT
1 TCCAAAAATCATATTTTGACCCCTAAAATTT
*
40162987 TCCAAAAAT-GTATTTTGACCCCTAAAATTT
1 TCCAAAAATCATATTTTGACCCCTAAAATTT
*
40163017 TCC-AAAATCACATTTTGACCCC
1 TCCAAAAATCATATTTTGACCCC
40163039 CGAACTTCTC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
29 5 0.11
30 33 0.70
31 9 0.19
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.34
Consensus pattern (31 bp):
TCCAAAAATCATATTTTGACCCCTAAAATTT
Found at i:40163051 original size:29 final size:30
Alignment explanation
Indices: 40162950--40163125 Score: 121
Period size: 30 Copynumber: 6.0 Consensus size: 30
40162940 AAAGGTTCCT
* *
40162950 GAACTATC-CAAAAATCATATTTTGACCCCT
1 GAACT-TCTCAAAAATCACATTTTGACCCCC
* * ** *
40162980 AAACTTTTCCAAAAAT-GTATTTTGACCCCT
1 GAACTTCT-CAAAAATCACATTTTGACCCCC
* * * *
40163010 AAAATTTTCCAAAATCACATTTTGACCCCC
1 GAACTTCTCAAAAATCACATTTTGACCCCC
* * **
40163040 GAACTTCTC-AAAATTATATTTTG-TTCCC
1 GAACTTCTCAAAAATCACATTTTGACCCCC
* *
40163068 GAACTTCTCAAAAAAT-ACATTTTTACCCTC
1 GAACTTCTC-AAAAATCACATTTTGACCCCC
*
40163098 GAACTTC-CAAAAATCACATTTTTACCCC
1 GAACTTCTCAAAAATCACATTTTGACCCC
40163126 TAAAACTTTC
Statistics
Matches: 118, Mismatches: 21, Indels: 15
0.77 0.14 0.10
Matches are distributed among these distances:
28 18 0.15
29 38 0.32
30 55 0.47
31 7 0.06
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.34
Consensus pattern (30 bp):
GAACTTCTCAAAAATCACATTTTGACCCCC
Found at i:40163150 original size:29 final size:29
Alignment explanation
Indices: 40162968--40163149 Score: 120
Period size: 30 Copynumber: 6.2 Consensus size: 29
40162958 CAAAAATCAT
* **
40162968 ATTTTGACCCCTAAACTTTTCCAAAAATGT
1 ATTTTGACCCCTAAAC-TTTCCAAAATTAC
* *
40162998 ATTTTGACCCCTAAAATTTTCCAAAATCAC
1 ATTTTGACCCCT-AAACTTTCCAAAATTAC
** *
40163028 ATTTTGACCCCCGAAC-TTCTCAAAATTAT
1 ATTTTGACCCCTAAACTTTC-CAAAATTAC
** * * *
40163057 ATTTTGTTCCC-GAACTTCTCAAAAAATAC
1 ATTTTGACCCCTAAACTT-TCCAAAATTAC
* * *
40163086 ATTTTTA-CCCTCGAAC-TTCCAAAAATCAC
1 ATTTTGACCCCT-AAACTTTCC-AAAATTAC
*
40163115 ATTTTTACCCCTAAAACTTTCCAAAATTAC
1 ATTTTGACCCCT-AAACTTTCCAAAATTAC
40163145 ATTTT
1 ATTTT
40163150 AACCTTAAAC
Statistics
Matches: 120, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
28 12 0.10
29 44 0.37
30 57 0.47
31 7 0.06
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36
Consensus pattern (29 bp):
ATTTTGACCCCTAAACTTTCCAAAATTAC
Found at i:40163150 original size:58 final size:58
Alignment explanation
Indices: 40162998--40163150 Score: 143
Period size: 58 Copynumber: 2.6 Consensus size: 58
40162988 CCAAAAATGT
* * * * *
40162998 ATTTTGACCCCTAAAATTTTCCAAAATCACATTTTGACCCCCGAACTTCTCAAAATTAT
1 ATTTTTACCCCTAAAACTTTCCAAAATTACATTTT-ACCCCCGAACTTCTCAAAATCAC
* * * * *
40163057 ATTTTGT-TCCC--GAACTTCTCAAAAAATACATTTTTACCCTCGAACTTC-CAAAAATCAC
1 ATTTT-TACCCCTAAAACTT-TCCAAAATTACA-TTTTACCCCCGAACTTCTC-AAAATCAC
40163115 ATTTTTACCCCTAAAACTTTCCAAAATTACATTTTA
1 ATTTTTACCCCTAAAACTTTCCAAAATTACATTTTA
40163151 ACCTTAAACT
Statistics
Matches: 73, Mismatches: 14, Indels: 15
0.72 0.14 0.15
Matches are distributed among these distances:
57 6 0.08
58 40 0.55
59 22 0.30
60 5 0.07
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.35
Consensus pattern (58 bp):
ATTTTTACCCCTAAAACTTTCCAAAATTACATTTTACCCCCGAACTTCTCAAAATCAC
Found at i:40166245 original size:40 final size:40
Alignment explanation
Indices: 40166200--40166275 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
40166190 GTGGCACTTT
*
40166200 TAGCGGCGTTTGGAAATAAAACGCCACAAAA-GTAAATCAA
1 TAGCGGCGTTTGCAAA-AAAACGCCACAAAAGGTAAATCAA
*
40166240 TAGCGGCGTTTTCAAAAAAACGCCACAAAAGGTAAA
1 TAGCGGCGTTTGCAAAAAAACGCCACAAAAGGTAAA
40166276 GCATTAGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 14 0.42
40 19 0.58
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.17
Consensus pattern (40 bp):
TAGCGGCGTTTGCAAAAAAACGCCACAAAAGGTAAATCAA
Found at i:40166289 original size:40 final size:40
Alignment explanation
Indices: 40166217--40166344 Score: 127
Period size: 40 Copynumber: 3.2 Consensus size: 40
40166207 GTTTGGAAAT
* **
40166217 AAAACGCCACAAAA-GTAAATCAATAGCGGCGTTTTCAA-A
1 AAAACGCCACAAAAGGTAAAGCAATAGTAGCG-TTTCAACA
*
40166256 AAAACGCCACAAAAGGTAAAGCATTAGTAGCGTTT-AACCA
1 AAAACGCCACAAAAGGTAAAGCAATAGTAGCGTTTCAA-CA
* * * * *
40166296 TAAACGCCGCAAAAGGTAAAGCAATACTAACGTTTCTAAGA
1 AAAACGCCACAAAAGGTAAAGCAATAGTAGCGTTTC-AACA
40166337 AAAACGCC
1 AAAACGCC
40166345 GCTAAAGATT
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.03
39 17 0.23
40 44 0.60
41 8 0.11
42 2 0.03
ACGTcount: A:0.45, C:0.21, G:0.16, T:0.17
Consensus pattern (40 bp):
AAAACGCCACAAAAGGTAAAGCAATAGTAGCGTTTCAACA
Found at i:40166413 original size:41 final size:40
Alignment explanation
Indices: 40166345--40166739 Score: 195
Period size: 41 Copynumber: 9.7 Consensus size: 40
40166335 GAAAAACGCC
* * ** *
40166345 GCTAAAGATTAGAGCATTAATGACGTTTAGGGCAAAGCGCT
1 GCTAAAGGTCAGAGCATTAGCGGCGTTTA-GGCAAAGCGCT
* * * *
40166386 ACTAAAGGTCTGAGCATTAGCGGCGTTTATTTGG--AAGTGCC
1 GCTAAAGGTCAGAGCATTAGCGGCGTTTA---GGCAAAGCGCT
* * **
40166427 GCTAAAGGTCGGAGCATTAGCGACGTTTATACAAAAGCGCT
1 GCTAAAGGTCAGAGCATTAGCGGCGTTTAGGC-AAAGCGCT
* * ** *
40166468 GCAAAAGGTCAGAACATTAGCGGCGTTTATGATAAAGCGCC
1 GCTAAAGGTCAGAGCATTAGCGGCGTTTA-GGCAAAGCGCT
* * * * * * * *
40166509 GATAAAGGTCAAAGTATTAGCTGCGTTTATAGAAAAGTGCC
1 GCTAAAGGTCAGAGCATTAGCGGCGTTTA-GGCAAAGCGCT
* *** * *
40166550 GCTAAAGGTC-GAAGCATTAGCGACGTTTATAAAGAAGCACC
1 GCTAAAGGTCAG-AGCATTAGCGGCGTTTAGGCA-AAGCGCT
* * * * * * *
40166591 GTTAAAGGTTAAAGCATTAGCGGCATTTATGAAAAGCGCC
1 GCTAAAGGTCAGAGCATTAGCGGCGTTTAGGCAAAGCGCT
* * * **
40166631 GCTGAAGGTCAGAGCATTAGCAGCATTTATGAAAAAGCG-T
1 GCTAAAGGTCAGAGCATTAGCGGCGTTTA-GGCAAAGCGCT
* * * * * *
40166671 CGCTAAAGGTCGGAGCATTAGTGGTGTTTATGAAAAGCGCC
1 -GCTAAAGGTCAGAGCATTAGCGGCGTTTAGGCAAAGCGCT
* *
40166712 GCTAAAGGTCGGAGCATTAGCGACGTTT
1 GCTAAAGGTCAGAGCATTAGCGGCGTTT
40166740 TACAATAAAC
Statistics
Matches: 272, Mismatches: 70, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
40 64 0.24
41 205 0.75
42 1 0.00
43 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (40 bp):
GCTAAAGGTCAGAGCATTAGCGGCGTTTAGGCAAAGCGCT
Found at i:40166486 original size:123 final size:123
Alignment explanation
Indices: 40166359--40166739 Score: 308
Period size: 123 Copynumber: 3.1 Consensus size: 123
40166349 AAGATTAGAG
* * * ** * *
40166359 CATTAATGACGTTTAGGGCAAAGCG-CTACTAAAGGTCTGAGCATTAGCGGCGTTTATTTG-GAA
1 CATTAACGACGTTTAGGACAAAGCGCCGA-TAAAGGTCAAAGCATTAGCGGCGTTTA-TAGAAAA
*
40166422 GTGCCGCTAAAGGTCGGAGCATTAGCGACGTTTATACAAAAGCGCTGCAAAAGGTCAGAA
64 GTGCCGCTAAAGGTCGAAGCATTAGCGACGTTTATACAAAAGCGCTGCAAAAGGTCAGAA
* * * * * *
40166482 CATTAGCGGCGTTTATGATAAAGCGCCGATAAAGGTCAAAGTATTAGCTGCGTTTATAGAAAAGT
1 CATTAACGACGTTTAGGACAAAGCGCCGATAAAGGTCAAAGCATTAGCGGCGTTTATAGAAAAGT
* * ** *
40166547 GCCGCTAAAGGTCGAAGCATTAGCGACGTTTATA-AAGAAGCACCGTTAAAGGTTA-AA
66 GCCGCTAAAGGTCGAAGCATTAGCGACGTTTATACAA-AAGCGCTGCAAAAGGTCAGAA
* * * * * * * * *
40166604 GCATTAGCGGCATTTATGA-AAAGCGCCGCTGAAGGTCAGAGCATTAGCAGCATTTAT-GAAAAA
1 -CATTAACGACGTTTAGGACAAAGCGCCGATAAAGGTCAAAGCATTAGCGGCGTTTATAG-AAAA
* * * * ** * * * * *
40166667 GCGTCGCTAAAGGTCGGAGCATTAGTGGTGTTTAT-GAAAAGCGCCGCTAAAGGTCGGAG
64 GTGCCGCTAAAGGTCGAAGCATTAGCGACGTTTATACAAAAGCGCTGCAAAAGGTCAGAA
*
40166726 CATTAGCGACGTTT
1 CATTAACGACGTTT
40166740 TACAATAAAC
Statistics
Matches: 212, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
121 27 0.13
122 74 0.35
123 109 0.51
124 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (123 bp):
CATTAACGACGTTTAGGACAAAGCGCCGATAAAGGTCAAAGCATTAGCGGCGTTTATAGAAAAGT
GCCGCTAAAGGTCGAAGCATTAGCGACGTTTATACAAAAGCGCTGCAAAAGGTCAGAA
Found at i:40166515 original size:82 final size:80
Alignment explanation
Indices: 40166378--40166757 Score: 350
Period size: 82 Copynumber: 4.7 Consensus size: 80
40166368 CGTTTAGGGC
** * *** * **
40166378 AAAGCGCTACTAAAGGTCTGAGCATTAGCGGCGTTTATTTGGAAGTGCCGCTAAAGGTCGGAGCA
1 AAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCGTTTA-TAAAAAGCGCCGCTAAAGGTCAAAGCA
* *
40166443 TTAGCGACGTTTATACA
65 TTAGCGGCGTTTAT-GA
* * * * * *
40166460 AAAGCGCTGCAAAAGGTCAGAACATTAGCGGCGTTTATGATAAAGCGCCGATAAAGGTCAAAGTA
1 AAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCGTTTAT-AAAAAGCGCCGCTAAAGGTCAAAGCA
*
40166525 TTAGCTGCGTTTATAGA
65 TTAGCGGCGTTTAT-GA
* * * * *
40166542 AAAGTGCCGCTAAAGGTC-GAAGCATTAGCGACGTTTATAAAGAAGCACCGTTAAAGGTTAAAGC
1 AAAGCGCCGCTAAAGGTCAG-AGCATTAGCGGCGTTTATAAA-AAGCGCCGCTAAAGGTCAAAGC
*
40166606 ATTAGCGGCATTTATGA
64 ATTAGCGGCGTTTATGA
* * * * **
40166623 AAAGCGCCGCTGAAGGTCAGAGCATTAGCAGCATTTATGAAAAAGCGTCGCTAAAGGTCGGAGCA
1 AAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCGTTTAT-AAAAAGCGCCGCTAAAGGTCAAAGCA
* *
40166688 TTAGTGGTGTTTATGA
65 TTAGCGGCGTTTATGA
* * *
40166704 AAAGCGCCGCTAAAGGTCGGAGCATTAGCGACGTTT-TACAATAAACGCCGCTAA
1 AAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCGTTTATA-AA-AAGCGCCGCTAA
40166758 TTTACATTTT
Statistics
Matches: 243, Mismatches: 48, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
79 1 0.00
80 3 0.01
81 108 0.44
82 131 0.54
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.23
Consensus pattern (80 bp):
AAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCGTTTATAAAAAGCGCCGCTAAAGGTCAAAGCAT
TAGCGGCGTTTATGA
Found at i:40168679 original size:41 final size:41
Alignment explanation
Indices: 40168576--40168679 Score: 120
Period size: 41 Copynumber: 2.5 Consensus size: 41
40168566 AAAAAATTAG
** *
40168576 AGGTCAATTAATAGCGGCATTTATGGGAAAAAAACCGCTAA
1 AGGTCAAGCAATAGCGGCGTTTATGGGAAAAAAACCGCTAA
** *
40168617 AGGTCAAGCAATAGCAACGTTTATGGGAAAAACACCGCTAA
1 AGGTCAAGCAATAGCGGCGTTTATGGGAAAAAAACCGCTAA
* *
40168658 AGGT-ATTGCAATAACGGCGTTT
1 AGGTCA-AGCAATAGCGGCGTTT
40168680 TTACATAAAC
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 1 0.02
41 51 0.98
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.22
Consensus pattern (41 bp):
AGGTCAAGCAATAGCGGCGTTTATGGGAAAAAAACCGCTAA
Found at i:40172765 original size:190 final size:192
Alignment explanation
Indices: 40172350--40172753 Score: 634
Period size: 190 Copynumber: 2.1 Consensus size: 192
40172340 GGATCCTACT
40172350 ATTCATGGTTGTCTCTATCTTTAGAGTAAAAAAATGGAGTTTTTTTGGTAATAATATATATTTCT
1 ATTCATGGTTGTCTCTATCTTTAGAGTAAAAAAATGGAGTTTTTTTGGTAATAATATATATTTCT
*
40172415 CATATGAAATCTTTCCATGTAAGGATGCAGATAACGTTCTTGTGAGAATAAAATATTTGGAAATA
66 CATATGAAATCTTTCCATGTAAGGATGCAGATAACGTCCTTGTGAGAATAAAATATTTGGAAATA
* * * * ***
40172480 AATCTGGCATACTTGGCAGAAAAGGATATACAGCAAAAGTTTCCTAATAGACGCACCTTACC
131 AATCTGACATACTTGGCACAAAAGGACATACAACAAAAGTTGAATAATAGACGCACCTTACC
* * * *
40172542 ATTCATGGTTGCCTTTATCTTTGGAGTAAAAAAAT-GAGTTTTTTT-TTAATAATATATATTT-T
1 ATTCATGGTTGTCTCTATCTTTAGAGTAAAAAAATGGAGTTTTTTTGGTAATAATATATATTTCT
* * *
40172604 ACATATGAAATCTTTCCATTTAAGGATGCAGATAATGTCCTTGTGAGAATACAATATTTGGAAAT
66 -CATATGAAATCTTTCCATGTAAGGATGCAGATAACGTCCTTGTGAGAATAAAATATTTGGAAAT
*
40172669 AAATCTGACATATTTGGCACAAAAGGACATACAACAAAAGTTGAATAATAGACGCACCTTACC
130 AAATCTGACATACTTGGCACAAAAGGACATACAACAAAAGTTGAATAATAGACGCACCTTACC
40172732 ATTCATGGTTGTCTCTATCTTT
1 ATTCATGGTTGTCTCTATCTTT
40172754 TTGGTAAAAA
Statistics
Matches: 193, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
189 1 0.01
190 150 0.78
191 10 0.05
192 32 0.17
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (192 bp):
ATTCATGGTTGTCTCTATCTTTAGAGTAAAAAAATGGAGTTTTTTTGGTAATAATATATATTTCT
CATATGAAATCTTTCCATGTAAGGATGCAGATAACGTCCTTGTGAGAATAAAATATTTGGAAATA
AATCTGACATACTTGGCACAAAAGGACATACAACAAAAGTTGAATAATAGACGCACCTTACC
Found at i:40172938 original size:32 final size:31
Alignment explanation
Indices: 40172873--40172935 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 31
40172863 TACTATTTTT
* *
40172873 TTTTTGAAAATTTTTATTAAAATCTCTTAAAA
1 TTTTTGAAAATTCTTATT-AAATCTCTAAAAA
40172905 TTTTTGAAAATTCTTATT-AATCTCATAAAAA
1 TTTTTGAAAATTCTTATTAAATCTC-TAAAAA
40172936 ATTACAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 6 0.21
31 5 0.18
32 17 0.61
ACGTcount: A:0.41, C:0.08, G:0.03, T:0.48
Consensus pattern (31 bp):
TTTTTGAAAATTCTTATTAAATCTCTAAAAA
Found at i:40195572 original size:49 final size:48
Alignment explanation
Indices: 40195403--40195589 Score: 164
Period size: 49 Copynumber: 3.8 Consensus size: 48
40195393 ATTCGCCGTT
* *
40195403 GCGGCTTCAATCTGTTCCCTCTTTGATTTCAAGGTGTTAGATCCATCGTC
1 GCGGCTTCAATCT-TTCCCTCTTTGATTTTAAGGT-TTAGATCCGTCGTC
* * * ** *
40195453 GTGGCTTCGATCTATCCCTCTTT-AGTTTTAACGCATTAGGTCCGTCGTC
1 GCGGCTTCAATCTTTCCCTCTTTGA-TTTTAA-GGTTTAGATCCGTCGTC
* *
40195502 GCGGCTTCAA-CTTATTCCTCTTCTG-TTTTAAGGTTTAAGATCCGTCGTT
1 GCGGCTTCAATCTT-TCCCTCTT-TGATTTTAAGGTTT-AGATCCGTCGTC
* * *
40195551 GCGACTTCAATCTTTCTCTCTTTGATTTTAGGGTGTTAG
1 GCGGCTTCAATCTTTCCCTCTTTGATTTTAAGGT-TTAG
40195590 GTCCACCATT
Statistics
Matches: 108, Mismatches: 20, Indels: 19
0.73 0.14 0.13
Matches are distributed among these distances:
48 8 0.07
49 82 0.76
50 18 0.17
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.41
Consensus pattern (48 bp):
GCGGCTTCAATCTTTCCCTCTTTGATTTTAAGGTTTAGATCCGTCGTC
Found at i:40195620 original size:98 final size:98
Alignment explanation
Indices: 40195507--40195785 Score: 282
Period size: 98 Copynumber: 2.8 Consensus size: 98
40195497 TCGTCGCGGC
* * * * *
40195507 TTCAACTTATTCCTCTTCTGTTTTAAGGTTTAAGATCCGTCGTTGCGACTTCAATCTTTCTCTCT
1 TTCAACCTATCCCTCTTCTGTTTTAAGGTGTAAGATCCGACATTGCGACTTCAATCTTTCTCTCT
*
40195572 TTGATTTTAGGGTGTTAGGTCCACCATTACAACT
66 TTGGTTTTAGGGTGTTAGGTCCACCATTACAA-T
* * * * * * *
40195606 TT-AACCTGTCCCTCTT-TGGTTTTAAGGTGTAAGGTCCGCCATTGCGGCTCCAACCTTTCCCTC
1 TTCAACCTATCCCTCTTCT-GTTTTAAGGTGTAAGATCCGACATTGCGACTTCAATCTTTCTCTC
* *****
40195669 TTTGGTTTTTGGGTGTTAGGTCTGTTGTTACAAT
65 TTTGGTTTTAGGGTGTTAGGTCCACCATTACAAT
40195703 TTCAACCTATCCCTCTTC-GATTTTACA-GTGTAAGATCC-ACTATTGC-AGCTTCAATCTTTCT
1 TTCAACCTATCCCTCTTCTG-TTTTA-AGGTGTAAGATCCGAC-ATTGCGA-CTTCAATCTTTCT
*
40195764 CTGTTTGGTTTTAGGGTGTTAG
62 CTCTTTGGTTTTAGGGTGTTAG
40195786 ATTGGCTATT
Statistics
Matches: 146, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
97 6 0.04
98 137 0.94
99 3 0.02
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.42
Consensus pattern (98 bp):
TTCAACCTATCCCTCTTCTGTTTTAAGGTGTAAGATCCGACATTGCGACTTCAATCTTTCTCTCT
TTGGTTTTAGGGTGTTAGGTCCACCATTACAAT
Found at i:40195684 original size:49 final size:49
Alignment explanation
Indices: 40195562--40195785 Score: 151
Period size: 49 Copynumber: 4.6 Consensus size: 49
40195552 CGACTTCAAT
* * **
40195562 CTTTCTCTCTTTGATTTTAGGGTGTTAGGTCCACCATTACAACTTTAAC
1 CTTTCCCTCTTTGGTTTTAGGGTGTTAGGTCCACCATTACAACTCCAAC
* * * * * **
40195611 CTGTCCCTCTTTGGTTTTAAGGTGTAAGGTCCGCCATTGCGGCTCCAAC
1 CTTTCCCTCTTTGGTTTTAGGGTGTTAGGTCCACCATTACAACTCCAAC
* ***** * *
40195660 CTTTCCCTCTTTGGTTTTTGGGTGTTAGGTCTGTTGTTACAATTTCAAC
1 CTTTCCCTCTTTGGTTTTAGGGTGTTAGGTCCACCATTACAACTCCAAC
* * * ** * * * * * * *
40195709 CTATCCCTCTTCGATTTTACAGTGTAAGATCCACTATTGCAGCTTCAAT
1 CTTTCCCTCTTTGGTTTTAGGGTGTTAGGTCCACCATTACAACTCCAAC
* *
40195758 CTTTCTCTGTTTGGTTTTAGGGTGTTAG
1 CTTTCCCTCTTTGGTTTTAGGGTGTTAG
40195786 ATTGGCTATT
Statistics
Matches: 127, Mismatches: 48, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
49 127 1.00
ACGTcount: A:0.17, C:0.22, G:0.19, T:0.42
Consensus pattern (49 bp):
CTTTCCCTCTTTGGTTTTAGGGTGTTAGGTCCACCATTACAACTCCAAC
Found at i:40221577 original size:15 final size:16
Alignment explanation
Indices: 40221548--40221580 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
40221538 TTTCATTTAT
*
40221548 TTTTATTGTCCTTGCA
1 TTTTATTGTCATTGCA
40221564 TTTTA-TGTCATTGCA
1 TTTTATTGTCATTGCA
40221579 TT
1 TT
40221581 CCTTTTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.15, C:0.15, G:0.12, T:0.58
Consensus pattern (16 bp):
TTTTATTGTCATTGCA
Found at i:40227124 original size:22 final size:22
Alignment explanation
Indices: 40227099--40227140 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
40227089 GTGTGCTAGA
40227099 TATTGCA-TTGTGCTTGTGATTT
1 TATTGCATTTGTG-TTGTGATTT
40227121 TATTGCATTTGTGTTGTGAT
1 TATTGCATTTGTGTTGTGAT
40227141 ATGTTGTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.14, C:0.07, G:0.24, T:0.55
Consensus pattern (22 bp):
TATTGCATTTGTGTTGTGATTT
Found at i:40234453 original size:43 final size:43
Alignment explanation
Indices: 40234351--40234934 Score: 357
Period size: 43 Copynumber: 13.6 Consensus size: 43
40234341 TATTTTTAGC
* * ** *
40234351 CCGATGCTCTCGCACATCCAAGGCACAAAGGTGTCAATGGTGT
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
* * ** * ** *
40234394 CCAATGCTCCAACACATCCAAAGCATGAAGGTATCGATGGTGT
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
** * *
40234437 CCGAGGCTCTTGCACATCCAAGGCACCAAGGTGCCGATGGTGT
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
* * *
40234480 CTGAGGCTCCCGTACATCCAAGGCACAAAGGTACCGGTGGTGT
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
* * * * *
40234523 CTGAGGCTCCTGCACATCCAAGGCACCAAGGTACCGGTGTTGT
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
* * *** * * *
40234566 CCGATGTTGTTGCACACCCAAGGCACTAAGGTACCGATGCT-T
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
* * * *
40234608 CTCGATGCTCCCGCACATCCAAGGCATC-ACGGTGCTGGA-GGTGT
1 C-CGAGGCTCCCGCACATCCAAGGCA-CAAAGGTAC-CGATGGTGT
* * * * * * *
40234652 CCAATGCTCCCGCATATCCAACGCACCAAGGTGCCGGTGGTGT
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
** * ** * **
40234695 TTGAAGCTCCCAAACATCCAAGGCACCAAGGTGTCGATGGTGT
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
* * * * * * * *
40234738 GCAATGCTCCCGCACATCCAAGGGACCAAGGTGCTGATGGTGC
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
* * * * ** * * *
40234781 CCAATGCTGCCGTACATCCAAGGCATTAAGATGCTGATGGTGT
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
* * * * *
40234824 CCGATGCTCCCGCACATCCTAGGTACCAAGGTGCC-AGTGGTGT
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGA-TGGTGT
* * * *
40234867 CCGATGCTGCCGCACATCCAAGGCACCAAGTTACCGATGGTGT
1 CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
* * * * *
40234910 CTGATGCTCCAGCATATCTAAGGCA
1 CCGAGGCTCCCGCACATCCAAGGCA
40234935 TCAAGGTGCC
Statistics
Matches: 432, Mismatches: 101, Indels: 16
0.79 0.18 0.03
Matches are distributed among these distances:
42 5 0.01
43 421 0.97
44 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (43 bp):
CCGAGGCTCCCGCACATCCAAGGCACAAAGGTACCGATGGTGT
Found at i:40234511 original size:86 final size:86
Alignment explanation
Indices: 40234351--40236430 Score: 533
Period size: 86 Copynumber: 24.4 Consensus size: 86
40234341 TATTTTTAGC
* * * * * ** *
40234351 CCGATGCTCTCGCACATCCAAGGCACAAAGGTGTCAATGGTGTCCAATGCTCCAACACATCCAAA
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
** *
40234416 GCATGAAGGTATCGATGGTGT
66 GCACCAAGGTACCGATGGTGT
* ** * * *
40234437 CCGAGGCTCTTGCACATCCAAGGCACCAAGGTGCCGATGGTGTCTGAGGCTCCCGTACATCCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
* *
40234502 GCACAAAGGTACCGGTGGTGT
66 GCACCAAGGTACCGATGGTGT
* * * * * * * *** *
40234523 CTGAGGCTCCTGCACATCCAAGGCACCAAGGTACCGGTGTTGTCCGATGTTGTTGCACACCCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
* *
40234588 GCACTAAGGTACCGATGCT-T
66 GCACCAAGGTACCGATGGTGT
* * * * *
40234608 CTCGATGCTCCCGCACATCCAAGGCATCACGGTGCTGGA-GGTGTCCAATGCTCCCGCATATCCA
1 C-CGATGCTCCCGCACATCCAAGGCACCAAGGTGC-CGATGGTGTCCGATGCTCCCGCACATCCA
* * *
40234672 ACGCACCAAGGTGCCGGTGGTGT
64 AGGCACCAAGGTACCGATGGTGT
** * ** * * *
40234695 TTGAAGCTCCCAAACATCCAAGGCACCAAGGTGTCGATGGTGTGCAATGCTCCCGCACATCCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
* * * *
40234760 GGACCAAGGTGCTGATGGTGC
66 GCACCAAGGTACCGATGGTGT
* * * ** * * *
40234781 CCAATGCTGCCGTACATCCAAGGCATTAAGATGCTGATGGTGTCCGATGCTCCCGCACATCCTAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
* *
40234846 GTACCAAGGTGCC-AGTGGTGT
66 GCACCAAGGTACCGA-TGGTGT
* * * * * * *
40234867 CCGATGCTGCCGCACATCCAAGGCACCAAGTTACCGATGGTGTCTGATGCTCCAGCATATCTAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
* * * *
40234932 GCATCAAGGTGCCAAT-GTTT
66 GCACCAAGGTACCGATGGTGT
* * * * * * * * * * *
40234952 CCTAATGGTTCCACAC-TACCATTGGC-CTAAGTTGACGGA-GGTGTCCGTTGC-CCTGACAAAT
1 CC-GATGCTCCCGCACAT-CCA-AGGCACCAAGGTG-CCGATGGTGTCCGATGCTCCCG-CACAT
** * * * *
40235013 CC-AGGCATTAAGATGCTGATGGTTT
61 CCAAGGCACCAAGGTACCGATGGTGT
* * * * * * * * * *
40235038 TCGATGGTCCCGCACCA-CCATCGG-TCTAAGTTACTGGTGGTG-CCTGATGC-CCCTGCACAAC
1 CCGATGCTCCCGCA-CATCCA-AGGCACCAAGGTGCCGATGGTGTCC-GATGCTCCC-GCACATC
*
40235099 CAAGGCACCAAGGTACCGATGTTGT
62 CAAGGCACCAAGGTACCGATGGTGT
* * * ** * * * *
40235124 TCAATGCTTCCG--CAT---A-GCACCAATCTGTCGATGCT-TATCGATGCTCCCACACAAACAT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT-CCGATGCT-CC-CGC--ACAT
* * * ** ** *
40235182 CAGCATGTTTG-A-AATAGGGACACTTTTTTTAAGC
61 C--CAAG---GCACCA-AGGTAC-C-GATGGT--GT
*** * *** ** * * * * * **
40235216 CCGACATTACCGCACCAACATTG-GCCTAAGTTACCGATGCTG-CTCGATGCTCCCGCATATTTA
1 CCGATGCTCCCGCACATCCAAGGCACC-AAGGTGCCGATGGTGTC-CGATGCTCCCGCACATCCA
* ** **
40235279 AGACACCAAGGTGTCGATACT-T
64 AGGCACCAAGGTACCGATGGTGT
* * * * * * *
40235301 CTTGATGGTTCCGCACCA-CCACTAGTG---TAAGTTACCGATGGTGTCCGATGTTCCCGCACAT
1 C-CGATGCTCCCGCA-CATCCA--AG-GCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACAT
* * *
40235362 CGAAGGCACCAAGGT-GCAAT-G-GT
61 CCAAGGCACCAAGGTACCGATGGTGT
* * * * * * * * *
40235385 CC--CGC-ACCAC-CAT-C--GGC-CTAAGTTACCGATGGTGTCTGATGCCCCCGCCCATCCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
*
40235442 GCACCAAGGTACCGATGCT-T
66 GCACCAAGGTACCGATGGTGT
* * * * * * * * * * *
40235462 CTCGATGGTCCCACACCAT-CACTGG-TCTAAGTTTCCAATGGTGTTCGATGCTCTCGTACATCC
1 C-CGATGCTCCCGCA-CATCCA-AGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCC
* * *
40235525 AAGGCACCAAGGTGCCAATGCT-T
63 AAGGCACCAAGGTACCGATGGTGT
* ** * * **
40235548 CCTGATAG-TCCCACATCA-CCACCG-ACCTAGGTTGCCAATAATGTCCGATGCTCCCGCACATC
1 CC-GAT-GCTCCCGCA-CATCCAAGGCACCAAGG-TGCCGATGGTGTCCGATGCTCCCGCACATC
* * * * *
40235610 TAAGGTAGCAAGGTGCCAATGGT-T
62 CAAGGCACCAAGGTACCGATGGTGT
* * * * * ** * * ** *
40235634 CCCAATGGTCCCGTACCA-CCATCGGC-CTAACTTACCGATAGTGTCTAATGCTCCCGCACATCA
1 -CCGATGCTCCCGCA-CATCCA-AGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCC
* * *
40235697 AAGGCACTATGGTACCGATGCT-T
63 AAGGCACCAAGGTACCGATGGTGT
* * * * * * * * * *
40235720 CCCGATGGTTCCACACCA-CCATCGG-TCTAAGGTGCCAATAGT-TCCCGATGATCTCGCAC-TA
1 -CCGATGCTCCCGCA-CATCCA-AGGCACCAAGGTGCCGATGGTGT-CCGATGCTCCCGCACAT-
** * * *
40235781 CCATCG-ACCTAAGTTACCGATGGAGA
61 CCAAGGCACC-AAGGTACCGATGGTGT
* * * * * *
40235807 CCGATGCTCTCG-ACATCCAAGG-ACCAAGGTGTCAATGGTGTCCTAGGCTCCAGCACATCCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
* * * * *
40235870 GTACTAAGGTGCTGGTGGTGT
66 GCACCAAGGTACCGATGGTGT
* ** * ** * * ** *
40235891 CCGAGGCTTTCACACATCCAATACACCAAGGTGCTGGTGGTGTCCGATGCTGTCGCACATGCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
*
40235956 GCACCAAGGTGCCGATGGT-T
66 GCACCAAGGTACCGATGGTGT
* * * *
40235976 CTCAATGCTCCCGCATATCCAAGGTACCAAGGTACCGATGGTGTCCGATGCTCCCGCACATCCAA
1 C-CGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAA
* ***
40236041 GGCACTAAGGT-GTTAGTGGTGT
65 GGCACCAAGGTACCGA-TGGTGT
* * * * * *
40236063 CCGATGCTCCCGAACATCCAAGGCACCAAGGTACCGGTGGTGTCTGATGCTCTCGCATATCCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
* **
40236128 GTACCAAGGTTTCGATGGTGT
66 GCACCAAGGTACCGATGGTGT
* * * * *
40236149 CTGATGCTCCTGTACATCCAAGGCACCAAGGTACCGATGGTGTCCGATGCTCCAGCACATCCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
** *
40236214 GCACCAAGGTGTCGGTGGTGT
66 GCACCAAGGTACCGATGGTGT
* ** * * * * * * *
40236235 TCGATGCTGTCACACATCAAAGGTACCAAGGTGTCGATGGTCT-C---G-TACCAC-CAT-C--G
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
* ** * *
40236291 GC-CTAATTTACTGATGTTGT
66 GCACCAAGGTACCGATGGTGT
* * * * * * * * * *
40236311 CCGATACCCCCGTAAATCCAAGGCACCAAGGTACCGATGCTTTTCGATGGTCCCGCACCA-CCAT
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCA-CATCCAA
* * *
40236375 CG-ACCTAAGTTACCGATTGTGT
65 GGCACC-AAGGTACCGATGGTGT
**
40236397 TTGATGCTCCCGCACATCCAAGGCACCAAGGTGC
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTGC
40236431 TAATACTTCC
Statistics
Matches: 1454, Mismatches: 433, Indels: 214
0.69 0.21 0.10
Matches are distributed among these distances:
73 1 0.00
74 1 0.00
75 44 0.03
76 42 0.03
77 6 0.00
78 4 0.00
79 2 0.00
80 21 0.01
81 13 0.01
82 4 0.00
83 10 0.01
84 60 0.04
85 101 0.07
86 1066 0.73
87 22 0.02
88 8 0.01
89 4 0.00
90 7 0.00
91 1 0.00
92 9 0.01
94 4 0.00
96 2 0.00
97 4 0.00
98 18 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.23
Consensus pattern (86 bp):
CCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAG
GCACCAAGGTACCGATGGTGT
Found at i:40234917 original size:129 final size:128
Alignment explanation
Indices: 40234351--40234944 Score: 501
Period size: 129 Copynumber: 4.6 Consensus size: 128
40234341 TATTTTTAGC
* * ** * * *
40234351 CCGATGCTCTCGCACATCCAAGGCACAAAGGTGTCAATGGTGTCCAATGCTCCAACACATCCAAA
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGATGGTGTCCAATGCTCC-GCACATCCAAG
** ** * **
40234416 GCATGAAGGTATCGATGGTGTCCGAGGCTCTTGCACATCCAAGGCACCAAGGTGCCGATGGTGT
65 GCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
* * * * * ** *
40234480 CTGAGGCTCCCGTACATCCAAGGCACAAAGGTACCGGTGGTGTCTGAGGCTCCTGCACATCCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGATGGTGTCCAATGCTCC-GCACATCCAAG
* * * * *** * * * *
40234545 GCACCAAGGTACCGGTGTTGTCCGATGTTGTTGCACACCCAAGGCACTAAGGTACCGATGCT-T
65 GCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
* * * * *
40234608 CTCGATGCTCCCGCACATCCAAGGCATCACGGTGCTGGA-GGTGTCCAATGCTCCCGCATATCCA
1 C-CGATGCTCCCGCACATCCAAGGCACCAAGGTAC-CGATGGTGTCCAATGCT-CCGCACATCCA
* * ** * ** *
40234672 ACGCACCAAGGTGCCGGTGGTGTTTGAAGCTCCCAAACATCCAAGGCACCAAGGTGTCGATGGTG
63 AGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTG
40234737 T
128 T
* * * * * * *
40234738 GCAATGCTCCCGCACATCCAAGGGACCAAGGTGCTGATGGTGCCCAATGCTGCCGTACATCCAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGATGGTGTCCAATGCT-CCGCACATCCAAG
** * * * *
40234803 GCATTAAGATGCTGATGGTGTCCGATGCTCCCGCACATCCTAGGTACCAAGGTGCC-AGTGGTGT
65 GCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGA-TGGTGT
* * ** * *
40234867 CCGATGCTGCCGCACATCCAAGGCACCAAGTTACCGATGGTGTCTGATGCTCCAGCATATCTAAG
1 CCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGATGGTGTCCAATGCTCC-GCACATCCAAG
*
40234932 GCATCAAGGTGCC
65 GCACCAAGGTGCC
40234945 AATGTTTCCT
Statistics
Matches: 362, Mismatches: 96, Indels: 14
0.77 0.20 0.03
Matches are distributed among these distances:
128 7 0.02
129 351 0.97
130 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (128 bp):
CCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGATGGTGTCCAATGCTCCGCACATCCAAGG
CACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
Found at i:40235395 original size:75 final size:74
Alignment explanation
Indices: 40235305--40235451 Score: 197
Period size: 75 Copynumber: 2.0 Consensus size: 74
40235295 ATACTTCTTG
* ** *
40235305 ATGGTTCCGCACCACCACTAGTG-TAAGTTACCGATGGTGTCCGATGTTCCCGCACATCGAAGGC
1 ATGGTCCCGCACCACCA-TAG-GCTAAGTTACCGATGGTGTCCGATGCCCCCGCACATCCAAGGC
40235369 ACCAAGGTGCA
64 ACCAAGGTGCA
* * *
40235380 ATGGTCCCGCACCACCATCGGCCTAAGTTACCGATGGTGTCTGATGCCCCCGCCCATCCAAGGCA
1 ATGGTCCCGCACCACCATAGG-CTAAGTTACCGATGGTGTCCGATGCCCCCGCACATCCAAGGCA
40235445 CCAAGGT
65 CCAAGGT
40235452 ACCGATGCTT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
73 1 0.02
74 2 0.03
75 60 0.95
ACGTcount: A:0.22, C:0.33, G:0.24, T:0.20
Consensus pattern (74 bp):
ATGGTCCCGCACCACCATAGGCTAAGTTACCGATGGTGTCCGATGCCCCCGCACATCCAAGGCAC
CAAGGTGCA
Found at i:40235505 original size:161 final size:162
Alignment explanation
Indices: 40235225--40235544 Score: 392
Period size: 161 Copynumber: 2.0 Consensus size: 162
40235215 CCCGACATTA
* * * **
40235225 CCGCACCAACATTGGCCTAAGTTACCGATGCTGCTCGATGCTCCCGCATATTTAAGACACCAAGG
1 CCGCACCAACATCGGCCTAAGTTACCGATGCTGCTCGATGCCCCCGCACATCCAAGACACCAAGG
** * * * * * *
40235290 TGTCGATACTTCTTGATGGTTCCGCACCACCACTAGTGTAAGTTACCGATGGTGTCCGATGTTCC
66 TACCGATACTTCTCGATGGTCCCACACCACCACTAGTCTAAGTTACCAATGGTGTCCGATGCTCC
*
40235355 CGCACATCGAAGGCACCAAGGTG-CAATGGTC
131 CGCACATCCAAGGCACCAAGGTGCCAATGGTC
* * * *
40235386 CCGCACCACCATCGGCCTAAGTTACCGATGGTG-TCTGATGCCCCCGCCCATCCAAGGCACCAAG
1 CCGCACCAACATCGGCCTAAGTTACCGATGCTGCTC-GATGCCCCCGCACATCCAAGACACCAAG
* * * * *
40235450 GTACCGATGCTTCTCGATGGTCCCACACCATCACTGGTCTAAGTTTCCAATGGTGTTCGATGCTC
65 GTACCGATACTTCTCGATGGTCCCACACCACCACTAGTCTAAGTTACCAATGGTGTCCGATGCTC
* *
40235515 TCGTACATCCAAGGCACCAAGGTGCCAATG
130 CCGCACATCCAAGGCACCAAGGTGCCAATG
40235545 CTTCCTGATA
Statistics
Matches: 132, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
160 2 0.02
161 125 0.95
162 5 0.04
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.23
Consensus pattern (162 bp):
CCGCACCAACATCGGCCTAAGTTACCGATGCTGCTCGATGCCCCCGCACATCCAAGACACCAAGG
TACCGATACTTCTCGATGGTCCCACACCACCACTAGTCTAAGTTACCAATGGTGTCCGATGCTCC
CGCACATCCAAGGCACCAAGGTGCCAATGGTC
Found at i:40236268 original size:43 final size:43
Alignment explanation
Indices: 40235797--40236275 Score: 435
Period size: 43 Copynumber: 11.2 Consensus size: 43
40235787 ACCTAAGTTA
* * *
40235797 CCGATGGAGACCGATGCTCTCG-ACATCCAAGG-ACCAAGGTG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * * * * * *
40235838 TCAATGGTGTCCTAGGCTCCAGCACATCCAAGGTACTAAGGTG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * * ** * **
40235881 CTGGTGGTGTCCGAGGCTTTCACACATCCAATACACCAAGGTG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * ** *
40235924 CTGGTGGTGTCCGATGCTGTCGCACATGCAAGGCACCAAGGTG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * * *
40235967 CCGATGGT-TCTCAATGCTCCCGCATATCCAAGGTACCAAGGTA
1 CCGATGGTGTC-CGATGCTCCCGCACATCCAAGGCACCAAGGTG
*
40236010 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
** * *
40236053 -TTAGTGGTGTCCGATGCTCCCGAACATCCAAGGCACCAAGGTA
1 CCGA-TGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * * * * *
40236096 CCGGTGGTGTCTGATGCTCTCGCATATCCAAGGTACCAAGGTT
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * * * *
40236139 TCGATGGTGTCTGATGCTCCTGTACATCCAAGGCACCAAGGTA
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
*
40236182 CCGATGGTGTCCGATGCTCCAGCACATCCAAGGCACCAAGGTG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
* * * ** * * *
40236225 TCGGTGGTGTTCGATGCTGTCACACATCAAAGGTACCAAGGTG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
*
40236268 TCGATGGT
1 CCGATGGT
40236276 CTCGTACCAC
Statistics
Matches: 353, Mismatches: 79, Indels: 10
0.80 0.18 0.02
Matches are distributed among these distances:
41 14 0.04
42 13 0.04
43 324 0.92
44 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (43 bp):
CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTG
Found at i:40236584 original size:86 final size:86
Alignment explanation
Indices: 40236281--40236568 Score: 317
Period size: 86 Copynumber: 3.3 Consensus size: 86
40236271 ATGGTCTCGT
* * * * * *
40236281 ACCACCATCGGCCTAATTTACTGATGTTGTCCGATACCCCCGTAAATCCAAGGCACCAAGGTACC
1 ACCACCATCGGCCTAAGTTACCGATGGTGTCCGATACTCCCGTACATCCAAGGCACCAAGGTGCC
* ** *
40236346 GATGCTTTTCGATGGTCCCGC
66 AATGCTTCCCGATGATCCCGC
* * ** * * *
40236367 ACCACCATCGACCTAAGTTACCGATTGTGTTTGATGCTCCCGCACATCCAAGGCACCAAGGTGCT
1 ACCACCATCGGCCTAAGTTACCGATGGTGTCCGATACTCCCGTACATCCAAGGCACCAAGGTGCC
* **
40236432 AATACTTCCCGAT-AGTTTCGC
66 AATGCTTCCCGATGA-TCCCGC
* * * * *
40236453 ACCACCACCGGTCTAAGTTACTGATAGTGTCCAATACTCCCGTACATCCAAGGCACCAAGGTGCC
1 ACCACCATCGGCCTAAGTTACCGATGGTGTCCGATACTCCCGTACATCCAAGGCACCAAGGTGCC
* *
40236518 AATGCTTCCCAATGATCCCGT
66 AATGCTTCCCGATGATCCCGC
40236539 ACCACCATCGGCCTAAGTTACCGATGGTGT
1 ACCACCATCGGCCTAAGTTACCGATGGTGT
40236569 TTGATGCTCT
Statistics
Matches: 160, Mismatches: 40, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
86 159 0.99
87 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (86 bp):
ACCACCATCGGCCTAAGTTACCGATGGTGTCCGATACTCCCGTACATCCAAGGCACCAAGGTGCC
AATGCTTCCCGATGATCCCGC
Found at i:40237655 original size:258 final size:257
Alignment explanation
Indices: 40237166--40238116 Score: 944
Period size: 258 Copynumber: 3.7 Consensus size: 257
40237156 TTTTTTTAGC
* * * * * *
40237166 CCGATGGTGTCCCATGCTCCCGCACATCCAAGGTACTAAGGTGTTGATGCTT-TTCGATGGTCTC
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCTGATGCTTCCT-GATGGTCCC
* * ** * * ** * *
40237230 -A-CACCATCGACCTAAGTTATCGATGGTGTTTGATTCTCCTGCACATGTAAGGCACCAAGGTGT
65 GACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTGC
* * * * * *
40237293 CGAT-ACTTCTCGATGGTCCCGCACCACCATCGTCCTAAGTTACCGATGGTGT-TCGATGCTCCC
130 CGATGA-TTCCCAATGGTCTCGCACCACCATCGGCCTAAGTTGCCGATGGTGTCT-GATGCTCTC
* * * * * * * *
40237356 TCACATCCAAGGTACTAAGGTTTCGAT-ATTGCCCCATGGTCCCGCACCACCATCGACCTATGTT
193 GCACATCCAAGGTACCAAGGTATCGATGGTT-CCCGATGGTCCTGCACCACCATCGGCCTAAGTT
*
40237420 G
257 A
* * ** * ** **
40237421 CAGATGGTGTCCGATGCTCTCGCACATTTAAGGAATTAAGGTATTGATGCTTCCTGATGGTCCCA
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCTGATGCTTCCTGATGGTCCC-
* * * * **
40237486 GACCACCATCGGCCTAAGTTACCGATGGTGTCCAATGCTTCCTCACATCCAAGGCACTAAGTTTT
65 GACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTGC
* * * *
40237551 CGAT-ATTACCCCATGGTCTCGCACCACCATCGGCCTAAGTTGTCAATGGTGTCTAATGCTCTCG
130 CGATGATT-CCCAATGGTCTCGCACCACCATCGGCCTAAGTTGCCGATGGTGTCTGATGCTCTCG
* * * * *
40237615 CACATACAAGGCACCAAGGTACCGATGGTTCTCGATGGTCCTGCACCACCATCGGTCTAAGTTA
194 CACATCCAAGGTACCAAGGTATCGATGGTTCCCGATGGTCCTGCACCACCATCGGCCTAAGTTA
* * * * * *
40237679 CCGATGGTGTCCGATGATCCCGCACATCTAAGGCACCAAGGTGCCGATACTGCCCGATGGTCCCG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCTGATGCTTCCTGATGGTCCCG
* * ** * ** *
40237744 TTCCACTATCGGCCTAAGTTATGGATAGTGTCCGATAATCCCGCACATCCAAGGCACTAAAGTGC
66 -ACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTGC
* * * * * *
40237809 CGATGCTTTCCAATGGTCTCGCACCACCACCGGCCTTAGTTGCCGATAGTGTCCGATGCTCTCGC
130 CGATGATTCCCAATGGTCTCGCACCACCATCGGCCTAAGTTGCCGATGGTGTCTGATGCTCTCGC
* * * ***
40237874 ACATCCAAGGTACCAAGGTGTTGATGGTTCCCGATGGTCTTATGCCACCATCGGCCTAAGTTA
195 ACATCCAAGGTACCAAGGTATCGATGGTTCCCGATGGTCCTGCACCACCATCGGCCTAAGTTA
* * *
40237937 CCGCTGGTGTCCAATGCTTCCGCACATCCAAGGCACCAAGGTGCTGATGCTTCCTGATGGTCCCA
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCTGATGCTTCCTGATGGTCCC-
* * * *
40238002 TACCACCACCGGCCTAAGTTACCGATGGTGTTCGATGCTCCCGCACATCCAAGGCACTAAGGTTC
65 GACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTGC
* ** * *
40238067 CGATGCTTCCCAATGGTCTCGCATTACCATCGGCCTAAGATACCGATGGT
130 CGATGATTCCCAATGGTCTCGCACCACCATCGGCCTAAGTTGCCGATGGT
40238117 TTTCGATTGT
Statistics
Matches: 562, Mismatches: 124, Indels: 17
0.80 0.18 0.02
Matches are distributed among these distances:
255 52 0.09
256 1 0.00
257 4 0.01
258 500 0.89
259 5 0.01
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (257 bp):
CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGCTGATGCTTCCTGATGGTCCCG
ACCACCATCGGCCTAAGTTACCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTGCC
GATGATTCCCAATGGTCTCGCACCACCATCGGCCTAAGTTGCCGATGGTGTCTGATGCTCTCGCA
CATCCAAGGTACCAAGGTATCGATGGTTCCCGATGGTCCTGCACCACCATCGGCCTAAGTTA
Found at i:40238123 original size:86 final size:86
Alignment explanation
Indices: 40237166--40238116 Score: 817
Period size: 86 Copynumber: 11.1 Consensus size: 86
40237156 TTTTTTTAGC
* * * **
40237166 CCGATGGTGTCCCATGCTCCCGCACATCCAAGGTACTAAGGTGT-TGATGCTTTTCGATGGTCT-
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGT-TCCGATGCTTCCCGATGGTCTC
*
40237229 -CA-CACCATCGACCTAAGTTA
65 GCACCACCATCGGCCTAAGTTA
* ** * * ** * * * *
40237249 TCGATGGTGTTTGATTCTCCTGCACATGTAAGGCACCAAGGTGT-CGATACTTCTCGATGGTCCC
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGT-TCCGATGCTTCCCGATGGTCTC
*
40237313 GCACCACCATCGTCCTAAGTTA
65 GCACCACCATCGGCCTAAGTTA
* * * * * * *
40237335 CCGATGGTGTTCGATGCTCCCTCACATCCAAGGTACTAAGGTTTCGAT-ATTGCCCCATGGTCCC
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTTCCGATGCTT-CCCGATGGTCTC
* * *
40237399 GCACCACCATCGACCTATGTTG
65 GCACCACCATCGGCCTAAGTTA
* * ** * * * * *
40237421 CAGATGGTGTCCGATGCTCTCGCACATTTAAGGAATTAAGGTAT-TGATGCTTCCTGATGGTCCC
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGT-TCCGATGCTTCCCGATGGTCTC
40237485 AG-ACCACCATCGGCCTAAGTTA
65 -GCACCACCATCGGCCTAAGTTA
* * * * * * *
40237507 CCGATGGTGTCCAATGCTTCCTCACATCCAAGGCACTAAGTTTTCGAT-ATTACCCCATGGTCTC
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTTCCGATGCTT-CCCGATGGTCTC
*
40237571 GCACCACCATCGGCCTAAGTTG
65 GCACCACCATCGGCCTAAGTTA
* * ** * * * * * *
40237593 TCAATGGTGTCTAATGCTCTCGCACATACAAGGCACCAAGGTACCGATGGTTCTCGATGGTC-CT
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTTCCGATGCTTCCCGATGGTCTC-
*
40237657 GCACCACCATCGGTCTAAGTTA
65 GCACCACCATCGGCCTAAGTTA
* * * * * * *
40237679 CCGATGGTGTCCGATGATCCCGCACATCTAAGGCACCAAGGTGCCGATACTGCCCGATGGTCCCG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTTCCGATGCTTCCCGATGGTCTCG
** *
40237744 TTCCACTATCGGCCTAAGTTA
66 CACCACCATCGGCCTAAGTTA
** * ** * * * *
40237765 TGGATAGTGTCCGATAATCCCGCACATCCAAGGCACTAAAGTGCCGATGCTTTCCAATGGTCTCG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTTCCGATGCTTCCCGATGGTCTCG
* * *
40237830 CACCACCACCGGCCTTAGTTG
66 CACCACCATCGGCCTAAGTTA
* * * * * * *
40237851 CCGATAGTGTCCGATGCTCTCGCACATCCAAGGTACCAAGGTGT-TGATGGTTCCCGATGGTCTT
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGT-TCCGATGCTTCCCGATGGTCTC
***
40237915 ATGCCACCATCGGCCTAAGTTA
65 GCACCACCATCGGCCTAAGTTA
* * * * * * * * *
40237937 CCGCTGGTGTCCAATGCTTCCGCACATCCAAGGCACCAAGGTGCTGATGCTTCCTGATGGTCCCA
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTTCCGATGCTTCCCGATGGTCTCG
* *
40238002 TACCACCACCGGCCTAAGTTA
66 CACCACCATCGGCCTAAGTTA
* *
40238023 CCGATGGTGTTCGATGCTCCCGCACATCCAAGGCACTAAGGTTCCGATGCTTCCCAATGGTCTCG
1 CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTTCCGATGCTTCCCGATGGTCTCG
** *
40238088 CATTACCATCGGCCTAAGATA
66 CACCACCATCGGCCTAAGTTA
40238109 CCGATGGT
1 CCGATGGT
40238117 TTTCGATTGT
Statistics
Matches: 691, Mismatches: 161, Indels: 29
0.78 0.18 0.03
Matches are distributed among these distances:
83 49 0.07
85 10 0.01
86 625 0.90
87 7 0.01
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (86 bp):
CCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACTAAGGTTCCGATGCTTCCCGATGGTCTCG
CACCACCATCGGCCTAAGTTA
Found at i:40240501 original size:43 final size:43
Alignment explanation
Indices: 40240452--40240770 Score: 184
Period size: 43 Copynumber: 7.4 Consensus size: 43
40240442 GAGAGCTTTG
*
40240452 GACACCATCGGTACCTTGGTGCCTCAGATGTTTAGG-AGCCTC-
1 GACACCATCGGTACCTTGGTGCCTCAGATG-TGAGGTAGCCTCA
* * * *
40240494 GAACACCATCGGCACCTTGGTGCCTCGGATGTGCGGTAGCTTCA
1 G-ACACCATCGGTACCTTGGTGCCTCAGATGTGAGGTAGCCTCA
* ** * * * *
40240538 GACGCCATCGGTACCTTGGTGCCTTGGATGTGCGGCAGCATCG
1 GACACCATCGGTACCTTGGTGCCTCAGATGTGAGGTAGCCTCA
* * * * * * *
40240581 GACACCATCGGCACATTGGTTCCT-AGGATGTGCGGGAGCATCG
1 GACACCATCGGTACCTTGGTGCCTCA-GATGTGAGGTAGCCTCA
* * * * * * * *
40240624 GACA-TATAGGCACCTTGGTGCCTTC-GATGTGTGGCAACATCG
1 GACACCATCGGTACCTTGGTGCC-TCAGATGTGAGGTAGCCTCA
** * * * *
40240666 GACACCATCGACACCTTAGTGCCTCGGATGTGCGGGTA-CCTCG
1 GACACCATCGGTACCTTGGTGCCTCAGATGTG-AGGTAGCCTCA
* * * * *
40240709 GACACCATCGGCATCTTGGTGCCTCGGATCTGCAGG-AGCCTCG
1 GACACCATCGGTACCTTGGTGCCTCAGATGTG-AGGTAGCCTCA
*
40240752 GACACCATCGGAACCTTGG
1 GACACCATCGGTACCTTGG
40240771 AGGTGCGGGA
Statistics
Matches: 229, Mismatches: 38, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
42 39 0.17
43 186 0.81
44 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (43 bp):
GACACCATCGGTACCTTGGTGCCTCAGATGTGAGGTAGCCTCA
Found at i:40240586 original size:86 final size:86
Alignment explanation
Indices: 40240436--40241406 Score: 737
Period size: 86 Copynumber: 11.7 Consensus size: 86
40240426 TGTTTCAGAC
* * * * ** *** * *
40240436 ATGTGCGAGAGCTTTGGACACCATCGGTACCTTGGTGCCTCAGATGTTTAGGAGCCTCGAACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACC
40240501 ATCGGCACCTTGGTGCCTCGG
66 ATCGGCACCTTGGTGCCTCGG
* * * * * *
40240522 ATGTGCGGTAGCTTCAGACGCCATCGGTACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACC
* * *
40240587 ATCGGCACATTGGTTCCTAGG
66 ATCGGCACCTTGGTGCCTCGG
* * * * * *
40240608 ATGTGCGGGAGCATCGGACA-TATAGGCACCTTGGTGCCTTCGATGTGTGGCAACATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACC
* *
40240672 ATCGACACCTTAGTGCCTCGG
66 ATCGGCACCTTGGTGCCTCGG
* * * * * *
40240693 ATGTGCGGGTA-CCTCGGACACCATCGGCATCTTGGTGCCTCGGATCTGCAGGAGCCTCGGACAC
1 ATGTGCGGG-AGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACAC
*
40240757 CATCGGAACC----T---T-GG
65 CATCGGCACCTTGGTGCCTCGG
* * * *
40240771 AGGTGCGGGAGCATC-G--A-------CACCTTGGTACCTTGGATGTACGGGAGCATCGAACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACC
*
40240826 ATTGGCACCTTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTC-GG
* * * * * * * * * *
40240847 TTGTGCGGTAGCATCGGATACGATCGGTATCTTGGTGCCTCGGATGTGCAGGAGCCTCGGGCACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACC
* *
40240912 ATCGACACCTTGGTGCCTCGT
66 ATCGGCACCTTGGTGCCTCGG
* * * * ** * * * *
40240933 ATGTGCGGGTGGC-TCGAACATCAACGATACCATGGTGCCTTAGATGTGTGGGAGTATCGGACAC
1 ATGTGCGGG-AGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACAC
* *
40240997 CATCGACACCTTGGTACCTTC-G
65 CATCGGCACCTTGGTGCC-TCGG
** * * * * * * * * *
40241019 ATGTGCGATAGAATCAGACACTATCGGCATCTTGGTGCCTCGGATGTACGGGACCCTAGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACC
*
40241084 ATCGGTACC----T---T-GG
66 ATCGGCACCTTGGTGCCTCGG
* * *
40241097 ATGTGCGGGAGCATCGAACACCATC-G-A------TACCTTGGATGTGCGAGAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACC
* *
40241154 ATCGACACCTTGGTGCCTTGG
66 ATCGGCACCTTGGTGCCTCGG
* * * *
40241175 ATGTGCGGGAGCATCGGACACCATCGGCAGCTTGGTGCCCTGGTTGTGCGGGAG-ACTCGGACAT
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCA-TCGGACAC
* *
40241239 CATCGGCACCTTGGTACCTCAG
65 CATCGGCACCTTGGTGCCTCGG
* * * *
40241261 ATGTGCGGGAGCCTCAGACACCATCCGCACCTTGGTGCCTTGGATGTG-GGAGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGG-GAGCATCGGACAC
* *
40241325 CATCGACACCTTGGTGCCTTGG
65 CATCGGCACCTTGGTGCCTCGG
* * *
40241347 ATGTGCGGGAGCATTGGACACCATCGGCATCTTGGTGCCTTGTATGTGCGGGAGCATCGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGG
40241407 GCTAAAAATA
Statistics
Matches: 679, Mismatches: 159, Indels: 94
0.73 0.17 0.10
Matches are distributed among these distances:
68 37 0.05
70 30 0.04
72 1 0.00
74 1 0.00
75 1 0.00
76 15 0.02
77 5 0.01
78 60 0.09
79 3 0.00
80 1 0.00
82 2 0.00
85 75 0.11
86 441 0.65
87 7 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (86 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTCGG
Found at i:40240688 original size:128 final size:128
Alignment explanation
Indices: 40240451--40240755 Score: 303
Period size: 128 Copynumber: 2.4 Consensus size: 128
40240441 CGAGAGCTTT
* * * ** * * * *
40240451 GGACACCATCGGTACCTTGGTGCCTCA-GATGTTTAGGAGCCTCGAACACCATCGGCACCTTGGT
1 GGACACCATCGGCATCTTGGTGCCT-AGGATCTGCAGGAGCATCGGACA-TATAGGCACCTTGGT
* * * * ** * *
40240515 GCCTCGGATGTGCGGTAGCTTCAGACGCCATCGGTACCTTGGTGCCTTGGATGTGC-GGCAGCAT
64 GCCTCGGATGTGCGGCAACATCAGACACCATCGACACCTTAGTGCCTCGGATGTGCGGGCA-CAT
40240579 C
128 C
* * *
40240580 GGACACCATCGGCA-CATTGGTTCCTAGGATGTGCGGGAGCATCGGACATATAGGCACCTTGGTG
1 GGACACCATCGGCATC-TTGGTGCCTAGGATCTGCAGGAGCATCGGACATATAGGCACCTTGGTG
* * * *
40240644 CCTTC-GATGTGTGGCAACATCGGACACCATCGACACCTTAGTGCCTCGGATGTGCGGGTACCTC
65 CC-TCGGATGTGCGGCAACATCAGACACCATCGACACCTTAGTGCCTCGGATGTGCGGGCACATC
* *
40240708 GGACACCATCGGCATCTTGGTGCCTCGGATCTGCAGGAGCCTCGGACA
1 GGACACCATCGGCATCTTGGTGCCTAGGATCTGCAGGAGCATCGGACA
40240756 CCATCGGAAC
Statistics
Matches: 145, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
128 102 0.70
129 43 0.30
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (128 bp):
GGACACCATCGGCATCTTGGTGCCTAGGATCTGCAGGAGCATCGGACATATAGGCACCTTGGTGC
CTCGGATGTGCGGCAACATCAGACACCATCGACACCTTAGTGCCTCGGATGTGCGGGCACATC
Found at i:40240802 original size:33 final size:35
Alignment explanation
Indices: 40240743--40240838 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 35
40240733 CGGATCTGCA
* * * * *
40240743 GGAGCCTCGGACACCATCGGAACCTTGGAGGTGCG
1 GGAGCATCGAACACCATTGGCACCTTGGAGGTACG
* *
40240778 GGAGCATCG-ACACC-TTGGTACCTTGGATGTACG
1 GGAGCATCGAACACCATTGGCACCTTGGAGGTACG
40240811 GGAGCATCGAACACCATTGGCACCTTGG
1 GGAGCATCGAACACCATTGGCACCTTGG
40240839 TGCCCTGGTT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
33 24 0.45
34 10 0.19
35 19 0.36
ACGTcount: A:0.22, C:0.27, G:0.32, T:0.19
Consensus pattern (35 bp):
GGAGCATCGAACACCATTGGCACCTTGGAGGTACG
Found at i:40240895 original size:43 final size:42
Alignment explanation
Indices: 40240782--40241406 Score: 376
Period size: 43 Copynumber: 14.9 Consensus size: 42
40240772 GGTGCGGGAG
* * * *
40240782 CATCGACACCTTGGTACCTTGGATGTACGGGAGCATCGAACAC
1 CATCGACACCTTGGTGCCTCGGATGTGC-GGAGCATCGGACAC
* * * *
40240825 CATTGGCACCTTGGTGCC-CTGGTTGTGCGGTAGCATCGGATAC
1 CATCGACACCTTGGTGCCTC-GGATGTGCGG-AGCATCGGACAC
* ** * * *
40240868 GATCGGTATCTTGGTGCCTCGGATGTGCAGGAGCCTCGGGCAC
1 CATCGACACCTTGGTGCCTCGGATGTGC-GGAGCATCGGACAC
* * * *
40240911 CATCGACACCTTGGTGCCTCGTATGTGCGGGTGGC-TCGAACAT
1 CATCGACACCTTGGTGCCTCGGATGTGC-GG-AGCATCGGACAC
* * * ** * *
40240954 CAACGATACCATGGTGCCTTAGATGTGTGGGAGTATCGGACAC
1 CATCGACACCTTGGTGCCTCGGATGTG-CGGAGCATCGGACAC
* * * *
40240997 CATCGACACCTTGGTACCTTC-GATGTGCGATAGAATCAGACAC
1 CATCGACACCTTGGTGCC-TCGGATGTGCG-GAGCATCGGACAC
* * * *
40241040 TATCGGCATCTTGGTGCCTCGGATGTACGG-G-A-C---C-C
1 CATCGACACCTTGGTGCCTCGGATGTGCGGAGCATCGGACAC
* * * * * *
40241075 TA-GGACACCATCGGTACCTTGGATGTGCGGGAGCATCGAACAC
1 CATCGACACC-TTGGTGCCTCGGATGTGC-GGAGCATCGGACAC
*
40241118 CATCGATACC----T---T-GGATGTGCGAGAGCATCGGACAC
1 CATCGACACCTTGGTGCCTCGGATGTGCG-GAGCATCGGACAC
*
40241153 CATCGACACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACAC
1 CATCGACACCTTGGTGCCTCGGATGTGC-GGAGCATCGGACAC
* * * *
40241196 CATCGGCAGCTTGGTGCC-CTGGTTGTGCGGGAG-ACTCGGACAT
1 CATCGACACCTTGGTGCCTC-GGATGTGC-GGAGCA-TCGGACAC
* * * * *
40241239 CATCGGCACCTTGGTACCTCAGATGTGCGGGAGCCTCAGACAC
1 CATCGACACCTTGGTGCCTCGGATGTGC-GGAGCATCGGACAC
* * *
40241282 CATCCG-CACCTTGGTGCCTTGGATGTGGGAGAGCCTCGGACAC
1 CAT-CGACACCTTGGTGCCTCGGATGTGCG-GAGCATCGGACAC
* *
40241325 CATCGACACCTTGGTGCCTTGGATGTGCGGGAGCATTGGACAC
1 CATCGACACCTTGGTGCCTCGGATGTGC-GGAGCATCGGACAC
* * * *
40241368 CATCGGCATCTTGGTGCCTTGTATGTGCGGGAGCATCGG
1 CATCGACACCTTGGTGCCTCGGATGTGC-GGAGCATCGG
40241407 GCTAAAAATA
Statistics
Matches: 456, Mismatches: 88, Indels: 76
0.74 0.14 0.12
Matches are distributed among these distances:
34 5 0.01
35 46 0.10
36 4 0.01
37 1 0.00
38 1 0.00
39 4 0.01
40 1 0.00
41 1 0.00
42 12 0.03
43 365 0.80
44 16 0.04
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (42 bp):
CATCGACACCTTGGTGCCTCGGATGTGCGGAGCATCGGACAC
Found at i:40241106 original size:35 final size:35
Alignment explanation
Indices: 40241077--40241166 Score: 144
Period size: 35 Copynumber: 2.6 Consensus size: 35
40241067 CGGGACCCTA
*
40241077 GGACACCATCGGTACCTTGGATGTGCGGGAGCATC
1 GGACACCATCGATACCTTGGATGTGCGGGAGCATC
* *
40241112 GAACACCATCGATACCTTGGATGTGCGAGAGCATC
1 GGACACCATCGATACCTTGGATGTGCGGGAGCATC
*
40241147 GGACACCATCGACACCTTGG
1 GGACACCATCGATACCTTGG
40241167 TGCCTTGGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (35 bp):
GGACACCATCGATACCTTGGATGTGCGGGAGCATC
Found at i:40241182 original size:242 final size:242
Alignment explanation
Indices: 40240888--40241338 Score: 543
Period size: 242 Copynumber: 1.9 Consensus size: 242
40240878 TTGGTGCCTC
* * * *
40240888 GGATGTGCAGGAGCCTCGGGCACCATCGACACCTTGGTGCCTCGTATGTGCGGGTGGC-TCGAAC
1 GGATGTGCAGGAGCATCGGACACCATCGACACCTTGGTGCCTCGGATGTGCGGG-AGCATCGAAC
* * * *
40240952 ATCAACGATACCATGGTGCCTTAGATGTGTGGGAGTA-TCGGACACCATCGACACCTTGGTACCT
65 ACCAACGACACCATGGTGCCCTAGATGTGCGGGAG-ACTCGGACACCATCGACACCTTGGTACC-
* * * *
40241016 TC-GATGTGCGATAGAATCAGACACTATCGGCATCTTGGTGCCTCGGATGTACGG-GACCCTAGG
128 TCAGATGTGCGAGAGAATCAGACACCATCCGCACCTTGGTGCCTCGGATGT-CGGAGACCCTAGG
**
40241079 ACACCATCGGTACCTTGGATGTGCGGGAGCATCGAACACCATCGATACCTT
192 ACACCATCGACACCTTGGATGTGCGGGAGCATCGAACACCATCGATACCTT
* *
40241130 GGATGTGC-GAGAGCATCGGACACCATCGACACCTTGGTGCCTTGGATGTGCGGGAGCATCGGAC
1 GGATGTGCAG-GAGCATCGGACACCATCGACACCTTGGTGCCTCGGATGTGCGGGAGCATCGAAC
* * * * * * * *
40241194 ACCATCGGCAGCTTGGTGCCCTGGTTGTGCGGGAGACTCGGACATCATCGGCACCTTGGTACCTC
65 ACCAACGACACCATGGTGCCCTAGATGTGCGGGAGACTCGGACACCATCGACACCTTGGTACCTC
* ** * * * *
40241259 AGATGTGCGGGAGCCTCAGACACCATCCGCACCTTGGTGCCTTGGATGTGGGAGAGCCTCGGACA
130 AGATGTGCGAGAGAATCAGACACCATCCGCACCTTGGTGCCTCGGATGTCGGAGACCCTAGGACA
40241324 CCATCGACACCTTGG
195 CCATCGACACCTTGG
40241339 TGCCTTGGAT
Statistics
Matches: 173, Mismatches: 31, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
241 8 0.05
242 165 0.95
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (242 bp):
GGATGTGCAGGAGCATCGGACACCATCGACACCTTGGTGCCTCGGATGTGCGGGAGCATCGAACA
CCAACGACACCATGGTGCCCTAGATGTGCGGGAGACTCGGACACCATCGACACCTTGGTACCTCA
GATGTGCGAGAGAATCAGACACCATCCGCACCTTGGTGCCTCGGATGTCGGAGACCCTAGGACAC
CATCGACACCTTGGATGTGCGGGAGCATCGAACACCATCGATACCTT
Found at i:40249433 original size:86 final size:86
Alignment explanation
Indices: 40249292--40250674 Score: 709
Period size: 86 Copynumber: 15.9 Consensus size: 86
40249282 TCGCAACTTG
* *
40249292 GGCCGATGGAT-GTACGGGACCATCGGGAGGTATCGGCACCTTGGTGCCTTC-GATGTGCGGGAG
1 GGCCGATGG-TGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCC-TCGGATGTGCGGGAG
* *
40249355 CATCGAACACCATCGACAACTCA
64 CATCGAACACCATCGGCAACTAA
* * * **
40249378 GGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCA
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCA
* * *
40249443 TCGGACACCATCGGCTACTTA
66 TCGAACACCATCGGCAACTAA
* ** * * *
40249464 GGCCGATGGTGGTGCGCGACCAAT-GGGAACCATCGACACCTTGGTGCCTCGAATGTGCGGGACC
1 GGCCGATGGTGGTGCGGGACC-ATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGC
** **
40249528 ATCGAGA-AGTATC-G-ATACATTG
65 ATCGA-ACACCATCGGCA-AC-TAA
*
40249550 GTGCC--TCGGAT-GTACGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC-GATGTGCGGG
1 G-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCC-TCGGATGTGCGGG
40249611 AGCATCGAACACCATCGGCAACTAA
62 AGCATCGAACACCATCGGCAACTAA
* *
40249636 GGCCGATGGTGGTGCGGGACCATCGGGAAAGTATCGGTACCTTGGTGCCTCGGATGTGCGAGAGC
1 GGCCGATGGTGGTGCGGGACCATCGGG-AAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGC
** *
40249701 ATCGGGCACCATCGGCAACAAA
65 ATCGAACACCATCGGCAACTAA
* * * * *
40249723 GGCCGATGGTGGTGCGGGACCATCGAGAAGTATCGGCACCATGGTGTCTTC-GATGTACGGGGGC
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTG-CCTCGGATGTGCGGGAGC
* * *
40249787 ATCGGACACCATCGGTAATTAA
65 ATCGAACACCATCGGCAACTAA
* * * * * * ** *
40249809 GGCCGATGGTGGTGTGCGACCATCAGGAAGCATCGGTACCTTGGTGCCTCGGATATGCGACACCA
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCA
** * **
40249874 TCGGAA-AGTATCGGCACCTTG
66 TC-GAACACCATCGGCAACTAA
* * * ** * * **
40249895 GTGCC-TTCGAT-GTGCGGGAGCATC-GGACACCATCGGTAACTCAG-GCCGAT-GG-TGGTGCG
1 G-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCC--TCGGAT-GTGCG
* * * * * *
40249954 GGACCATCGGGA-AGCATCGGTACCT-T
60 GGAGCATC-GAACACCATCGGCAACTAA
* * * ** * * ***
40249980 GGTACC--TCGGAT-GTGCGAGAGCATCGGGTACCATCGGTAACAAAG-GCCGAT-GG-TGGTGC
1 GG--CCGAT-GG-TGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCC--TCGGAT-GTGC
* ** * *
40250039 GGGACCATCGAGA-AGTATCGGCACCCT-G
59 GGGAGCATCGA-ACACCATCGGCA-ACTAA
* * ** ** * * *
40250067 GTGCC-TTCGAT-GTGCGGGACCATC-GGACACAATAAGCAACTAAGGT-CGAT-GG-TGGTGCG
1 G-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGTATCGGCACCT-TGGTGC-CTCGGAT-GTGCG
* * * * * **
40250126 GGACCATCGGGA-AGCATCGGTACCTTG
60 GGAGCATC-GAACACCATCGGCAACTAA
* *
40250153 GTGCC--TCGGAT-GTGCGAGACCATCGGGAAGTATCGACACCTTGGTGCCTTC-GATGTGCGGG
1 G-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCC-TCGGATGTGCGGG
* * *
40250214 AGCATCGGACACCATCGGTAACTCA
62 AGCATCGAACACCATCGGCAACTAA
* * * *
40250239 GGCCGATGGTGGTGCGGGACCATCAGGAAGCATCGGTACCTTGGTGCCTCGGATGTGCGAGAGCA
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCA
** *
40250304 TCGGGCACCATCGGCAACAAAA
66 TCGAACACCATCGGCAAC-TAA
*
40250326 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTC-GATGTGCGGGAGC
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGC
*
40250390 ATCGGACACCATCGGCAACTAA
65 ATCGAACACCATCGGCAACTAA
* * * *
40250412 GGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTGCCTCGGATCTGCGGGACCA
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCA
** * **
40250477 TCGGAA-AGTATCGGCACCTTG
66 TC-GAACACCATCGGCAACTAA
* * ** * * ** *
40250498 GTGTCTTCGATGTGCGGGAGCATCGAACACCATCGGTAA--CTCAGGC-CGATGGTG-GTGCGAG
1 G-G-C--CGATG-G-TGGTG---CG-GGACCATCGGGAAGTATC-GGCACCTTGGTGCCT-CG-G
** *
40250559 ACCAT-CGGGAAGCATCGGACACCATCGGCAACTAA
53 A-TGTGCGGG-AGCATCGAACACCATCGGCAACTAA
*
40250594 GGTCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGC
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGC
*
40250658 ATCGGACACCATCGGCA
65 ATCGAACACCATCGGCA
40250675 CCTAGGTGCC
Statistics
Matches: 1030, Mismatches: 188, Indels: 158
0.75 0.14 0.11
Matches are distributed among these distances:
84 1 0.00
85 50 0.05
86 688 0.67
87 207 0.20
88 13 0.01
89 1 0.00
90 9 0.01
91 2 0.00
92 8 0.01
93 1 0.00
94 10 0.01
95 13 0.01
96 27 0.03
ACGTcount: A:0.21, C:0.25, G:0.34, T:0.19
Consensus pattern (86 bp):
GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCA
TCGAACACCATCGGCAACTAA
Found at i:40249889 original size:259 final size:258
Alignment explanation
Indices: 40249299--40249876 Score: 632
Period size: 259 Copynumber: 2.2 Consensus size: 258
40249289 TTGGGCCGAT
* * * * * ** *
40249299 GGATGTACGGGACCATCGGGAGGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACA
1 GGATGTACGCGACCATCAGGAAGCATCGGCACCTTGGTGCCTTCGATATGCGACACCATCGAACA
* * *
40249364 CCATCGACAACTCAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAG
66 CCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTAG
* ** *
40249429 GATGTGCAAGAGCATCGGACACCATCGGCTACTTAGGCCGATGGTGGTGCGCGACCAATGGGAAC
131 GATGTGCAAGAGCATCGGACACCATCGGCAACAAAGGCCGATGGTGGTGCGCGACCAATGAGAAC
* * ** *
40249494 CATCGACACCTTGGTGCCTCGAATGTGCGGGACCATCGAGAAGTATCGATACATTGGTGCCTC
196 CATCGACACCATGGTGCCTCGAATGTACGGGACCATCGAGAACCATCGATACATTAGTGCCTC
* * * * ** *
40249557 GGATGTACGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACA
1 GGATGTACGCGACCATCAGGAAGCATCGGCACCTTGGTGCCTTCGATATGCGACACCATCGAACA
* * *
40249622 CCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGTATCGGTACCTTGGTGCCTC
66 CCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTA
* * *
40249687 GGATGTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTGGTGCGGGACC-ATCGAGA
130 GGATGTGCAAGAGCATCGGACACCATCGGCAACAAAGGCCGATGGTGGTGCGCGACCAAT-GAGA
** * * ** *
40249751 AGTATCGGCACCATGGTGTCTTCG-ATGTACGGGGGCATCG-GACACCATCGGTA-ATTAAG-GC
194 ACCATCGACACCATGGTG-CCTCGAATGTACGGGACCATCGAGA-ACCATCGATACATT-AGTGC
40249812 CGAT-
256 C--TC
** *
40249816 GG-TGGTGTGCGACCATCAGGAAGCATCGGTACCTTGGTGCC-TCGGATATGCGACACCATCG
1 GGAT-GTACGCGACCATCAGGAAGCATCGGCACCTTGGTGCCTTC-GATATGCGACACCATCG
40249877 GAAAGTATCG
Statistics
Matches: 275, Mismatches: 36, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
258 115 0.42
259 155 0.56
260 5 0.02
ACGTcount: A:0.22, C:0.25, G:0.34, T:0.19
Consensus pattern (258 bp):
GGATGTACGCGACCATCAGGAAGCATCGGCACCTTGGTGCCTTCGATATGCGACACCATCGAACA
CCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTAG
GATGTGCAAGAGCATCGGACACCATCGGCAACAAAGGCCGATGGTGGTGCGCGACCAATGAGAAC
CATCGACACCATGGTGCCTCGAATGTACGGGACCATCGAGAACCATCGATACATTAGTGCCTC
Found at i:40250500 original size:129 final size:129
Alignment explanation
Indices: 40249306--40250801 Score: 600
Period size: 129 Copynumber: 11.5 Consensus size: 129
40249296 GATGGATGTA
* * *
40249306 CGGGACCATCGGGAGGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGA
1 CGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGG
* * *
40249371 CAACTCAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGAT-GTG
66 CAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGG-TGGTG
** * ** * * * * * *
40249435 CAAGAGCATC-GGACACCATCGGCTA-CTTAG-GCCGAT-GGTGGTGCGCGACCAATGGGA-ACC
1 CGGGACCATCGGGA-AGTATCGGC-ACCTTGGTGCC-TTCGAT-GTGCGGGAGC-ATCGGACACC
* * ** * * * ** *
40249495 ATCGACACCTTGGTGCC--TCGAAT-GTGCGGGACCATCGAGAAGTATCGATACATTGGTGCCTC
61 ATCGGCAACTAAG-GCCGAT-G-GTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTC
*
40249557 GGAT-GTA
123 GG-TGGTG
*
40249564 CGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGG
1 CGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGG
* *
40249629 CAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGTATCGGTACCTTGGTGCCTCGGAT-GT
66 CAACTAAGGCCGATGGTGGTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGG-TGGT
40249693 G
129 G
* * * ** * *** * * * **
40249694 CGAGAGCATCGGGCACCATCGGCAACAAAG-GCCGAT-GGTGGTGCGGGACCATCGAGA-AGTAT
1 CGGGACCATCGGGAAGTATCGGCACCTTGGTGCC-TTCGAT-GTGCGGGAGCATCG-GACACCAT
* * * ** * ** * * * *
40249756 CGGC-ACCATGG-TG-TCTTCGATGTACGGGGGCATC-GGACACCATCGGTA-ATTAAG-GCCGA
63 CGGCAACTAAGGCCGATGGT-G--GTGCGGGACCATCGGGA-AGCATCGGCACCTT-GGTGCC--
40249815 T-GGTGGTG
121 TCGGTGGTG
* * * * * * ** * * **
40249823 TGCGACCATCAGGAAGCATCGGTACCTTGGTGCC-TCGGATATGCGACACCATCGGAAAGTATCG
1 CGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACCATCG
* ** * * * * * * **
40249887 GCACCTTGGTGCC-TTCGAT-GTGCGGGAGCATC-GGACACCATCGGTAACTCAG-GCCGAT-GG
65 GCAACTAAG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGCATCGGCACCTTGGTGCC--TCGG
40249947 TGGTG
125 TGGTG
* * * * **
40249952 CGGGACCATCGGGAAGCATCGGTACCTTGGTACC-TCGGATGTGCGAGAGCATCGGGTACCATCG
1 CGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACCATCG
* * * * * *
40250016 GTAACAAAGGCCGATGGTGGTGCGGGACCATCGAGAAGTATCGGCACCCTGGTGCCTTCGAT-GT
65 GCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGTGGT
40250080 G
129 G
** ** * * ** * * *
40250081 CGGGACCATC-GGACACAATAAGCAACTAAGGT-CGAT-GGTGGTGCGGGACCATCGGGA-AGCA
1 CGGGACCATCGGGA-AGTATCGGCACCT-TGGTGCCTTCGAT-GTGCGGGAGCATC-GGACACCA
* * ** * * *
40250142 TCGGTACCTTGGTGCC--TCGGAT-GTGCGAGACCATCGGGAAGTATCGACACCTTGGTGCCTTC
62 TCGGCAACTAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TC
*
40250204 GAT-GTG
123 GGTGGTG
* ** * * ** * * * *
40250210 CGGGAGCATC-GGACACCATCGGTAACTCAG-GCCGAT-GGTGGTGCGGGACCATCAGGA-AGCA
1 CGGGACCATCGGGA-AGTATCGGCACCTTGGTGCC-TTCGAT-GTGCGGGAGCATC-GGACACCA
* * ** * * * * ****
40250271 TCGGTACCTTGGTGCC--TCGGAT-GTGCGAGAGCATCGGGCACCATCGGCAACAAAAG-GCCGA
62 TCGGCAACTAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGCATCGGC-ACCTTGGTGCC--
40250332 T-GGTGGTG
121 TCGGTGGTG
*
40250340 CGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGG
1 CGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGG
* *
40250405 CAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTGCCTCGGAT-CTG
66 CAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGG-TGGTG
* * *
40250469 CGGGACCATCGGAAAGTATCGGCACCTTGGTGTCTTCGATGTGCGGGAGCATCGAACACCATCGG
1 CGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGG
* * * * *
40250534 TAACTCAGGCCGATGGTGGTGCGAGACCATCGGGAAGCATCGGACACCATCGGCAACTAAG-GTC
66 CAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGG-CACC-TTGG----T--GCCTC
40250598 GATGGTGGTG
123 ---GGTGGTG
40250608 CGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGG
1 CGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGG
* * * ** * *
40250673 CACCTAGGTGCC--TCGGAT-GTGCGGGAGCATC-GGACATTATCGGCAACTTTG-GCCGAT-GG
66 CAACTAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGA-AGCATCGGCACCTTGGTGCC--TCGG
40250732 TGGTG
125 TGGTG
* * * *
40250737 CGGGACCATCGGGAAGCATCGGGACCTAGGTGCCTT-GCATGTGCGGGAGCATGGGACACCATCG
1 CGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCG-ATGTGCGGGAGCATCGGACACCATCG
40250801 G
65 G
40250802 GCCAAAAAAA
Statistics
Matches: 1056, Mismatches: 225, Indels: 172
0.73 0.15 0.12
Matches are distributed among these distances:
127 2 0.00
128 45 0.04
129 682 0.65
130 203 0.19
131 14 0.01
132 1 0.00
133 2 0.00
135 1 0.00
136 2 0.00
137 3 0.00
138 8 0.01
139 89 0.08
140 4 0.00
ACGTcount: A:0.21, C:0.25, G:0.35, T:0.19
Consensus pattern (129 bp):
CGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGG
CAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGTGGTG
Found at i:40250533 original size:43 final size:43
Alignment explanation
Indices: 40249300--40250801 Score: 409
Period size: 43 Copynumber: 34.7 Consensus size: 43
40249290 TGGGCCGATG
* * ***
40249300 GATGTACGGGACCATCGGGAGGTATCGGCACCTTGGTGCCTTC
1 GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* * * ** *
40249343 GATGTGCGGGAGCATC-GAACACCATCGACAACTCAG-GCCGAT-
1 GATGTGCGGGACCATCGGAA-ACCATCGGCACCTTGGTGCC-TTC
* * * * **
40249385 GGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAG
1 GAT-GTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
** * * * *
40249429 GATGTGCAAGAGCATCGGACACCATCGGCTA-CTTAG-GCCGAT-
1 GATGTGCGGGACCATCGGAAACCATCGGC-ACCTTGGTGCC-TTC
* * * *
40249471 GGTGGTGCGCGACCAAT-GGGAACCATCGACACCTTGGTGCC-TC
1 GAT-GTGCGGGACC-ATCGGAAACCATCGGCACCTTGGTGCCTTC
** ** *
40249514 GAATGTGCGGGACCATC-GAGAAGTATCGATACATTGGTGCC-TC
1 G-ATGTGCGGGACCATCGGA-AACCATCGGCACCTTGGTGCCTTC
* * **
40249557 GGATGTACGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC
1 -GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* * ** *
40249601 GATGTGCGGGAGCATC-GAACACCATCGGCAACTAAG-GCCGAT-
1 GATGTGCGGGACCATCGGAA-ACCATCGGCACCTTGGTGCC-TTC
* ** *
40249643 GGTGGTGCGGGACCATCGGGAAAGTATCGGTACCTTGGTGCC-TC
1 GAT-GTGCGGGACCATC-GGAAACCATCGGCACCTTGGTGCCTTC
* * ** * *** *
40249687 GGATGTGCGAGAGCATCGGGCACCATCGGCAACAAAG-GCCGAT-
1 -GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCC-TTC
* ** * *
40249730 GGTGGTGCGGGACCATC-GAGAAGTATCGGCACCATGGTGTCTTC
1 GAT-GTGCGGGACCATCGGA-AACCATCGGCACCTTGGTGCCTTC
* ** * * * * *
40249774 GATGTACGGGGGCATCGGACACCATCGGTA-ATTAAG-GCCGAT-
1 GATGTGCGGGACCATCGGAAACCATCGGCACCTT-GGTGCC-TTC
* * * * *
40249816 GGTGGTGTGCGACCATCAGG-AAGCATCGGTACCTTGGTGCC-TC
1 GAT-GTGCGGGACCATC-GGAAACCATCGGCACCTTGGTGCCTTC
* ** **
40249859 GGATATGCGACACCATCGGAAAGTATCGGCACCTTGGTGCCTTC
1 -GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* * * * ** *
40249903 GATGTGCGGGAGCATCGGACACCATCGGTAACTCAG-GCCGAT-
1 GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCC-TTC
* * * * *
40249945 GGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTACC-TC
1 GAT-GTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* * ** * * *** *
40249988 GGATGTGCGAGAGCATCGGGTACCATCGGTAACAAAG-GCCGAT-
1 -GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCC-TTC
* ** *
40250031 GGTGGTGCGGGACCATC-GAGAAGTATCGGCACCCTGGTGCCTTC
1 GAT-GTGCGGGACCATCGGA-AACCATCGGCACCTTGGTGCCTTC
* * ** * * **
40250075 GATGTGCGGGACCATCGGACACAATAAGCAACTAAGGT-CGAT-
1 GATGTGCGGGACCATCGGAAACCATCGGCACCT-TGGTGCCTTC
* * * *
40250117 GGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTGCC-TC
1 GAT-GTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* * ** *
40250160 GGATGTGCGAGACCATCGGGAAGTATCGACACCTTGGTGCCTTC
1 -GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* * * * ** *
40250204 GATGTGCGGGAGCATCGGACACCATCGGTAACTCAG-GCCGAT-
1 GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCC-TTC
* * *
40250246 GGTGGTGCGGGACCATCAGG-AAGCATCGGTACCTTGGTGCC-TC
1 GAT-GTGCGGGACCATC-GGAAACCATCGGCACCTTGGTGCCTTC
* * ** **** *
40250289 GGATGTGCGAGAGCATCGGGCACCATCGGCAACAAAAG-GCCGAT-
1 -GATGTGCGGGACCATCGGAAACCATCGGC-ACCTTGGTGCC-TTC
* * ** *
40250333 GGTGGTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTC
1 GAT-GTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* * * ** *
40250377 GATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-
1 GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCC-TTC
* * * *
40250419 GGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTGCC-TC
1 GAT-GTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* ** *
40250462 GGATCTGCGGGACCATCGGAAAGTATCGGCACCTTGGTGTCTTC
1 -GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* * * ** *
40250506 GATGTGCGGGAGCATC-GAACACCATCGGTAACTCAG-GCCGAT-
1 GATGTGCGGGACCATCGGAA-ACCATCGGCACCTTGGTGCC-TTC
* * * * * *
40250548 GGTGGTGCGAGACCATCGGGAAGCATCGGACACCATCG-GCAACTAAGGTC
1 GAT-GTGCGGGACCATCGGAAACCATCGG-CACCTTGGTGC--CT----TC
* **
40250598 GATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC
1 GA---T-GTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* * *
40250645 GATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCC-TC
1 GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* * ** * * *
40250687 GGATGTGCGGGAGCATCGGACATTATCGGCAACTTTG-GCCGAT-
1 -GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCC-TTC
* * * * *
40250730 GGTGGTGCGGGACCATCGGGAAGCATCGGGACCTAGGTGCCTT-
1 GAT-GTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
* * *
40250773 GCATGTGCGGGAGCATGGGACACCATCGG
1 G-ATGTGCGGGACCATCGGAAACCATCGG
40250802 GCCAAAAAAA
Statistics
Matches: 1041, Mismatches: 315, Indels: 206
0.67 0.20 0.13
Matches are distributed among these distances:
42 83 0.08
43 775 0.74
44 132 0.13
45 9 0.01
46 1 0.00
47 4 0.00
49 1 0.00
50 1 0.00
51 2 0.00
52 6 0.01
53 27 0.03
ACGTcount: A:0.21, C:0.25, G:0.35, T:0.19
Consensus pattern (43 bp):
GATGTGCGGGACCATCGGAAACCATCGGCACCTTGGTGCCTTC
Found at i:40250608 original size:182 final size:182
Alignment explanation
Indices: 40250383--40250758 Score: 560
Period size: 182 Copynumber: 2.1 Consensus size: 182
40250373 CTTCGATGTG
40250383 CGGG-AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
* ** * *
40250447 GTACCTTGGTGCC-TCGGATCTGCGGGACCATCGGAAAGTATCGGCACCTTGGTGTCTTC-GATG
66 GCACCTTGGTGCCTTC-GATCTGCGGGACCATCGGAAACCATCGGCACCTAGGTG-CCTCGGATG
*
40250510 TGCGGGAGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCAT
129 TGCGGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
* *
40250564 CGGGAAGCATCGGACACCATCGGCAACTAAGGTCGATGGTGGTGCGGGACCATCGGGAAGTATCG
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
* * *
40250629 GCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGGATGTG
66 GCACCTTGGTGCCTTCGATCTGCGGGACCATCGGAAACCATCGGCACCTAGGTGCCTCGGATGTG
* ** ** *
40250694 CGGGAGCATCGGACATTATCGGCAACTTTGGCCGATGGTGGTGCGGGACCAT
131 CGGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
40250746 CGGGAAGCATCGG
1 CGGGAAGCATCGG
40250759 GACCTAGGTG
Statistics
Matches: 175, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
181 7 0.04
182 166 0.95
183 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.35, T:0.19
Consensus pattern (182 bp):
CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
GCACCTTGGTGCCTTCGATCTGCGGGACCATCGGAAACCATCGGCACCTAGGTGCCTCGGATGTG
CGGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
Found at i:40250629 original size:53 final size:53
Alignment explanation
Indices: 40250512--40250633 Score: 176
Period size: 53 Copynumber: 2.3 Consensus size: 53
40250502 CTTCGATGTG
* * *
40250512 CGGG-AGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
* *
40250564 CGGGAAGCATCGGACACCATCGGCAACTAAGGTCGATGGTGGTGCGGGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
*
40250617 CGGGAAGTATCGG-CACC
1 CGGGAAGCATCGGACACC
40250634 TTGGTGCCTT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
52 8 0.13
53 55 0.87
ACGTcount: A:0.25, C:0.26, G:0.34, T:0.15
Consensus pattern (53 bp):
CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
Found at i:40251498 original size:43 final size:43
Alignment explanation
Indices: 40251434--40252558 Score: 672
Period size: 43 Copynumber: 26.4 Consensus size: 43
40251424 TGTTCCAAAC
*
40251434 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
40251477 ATGTGCGGGAGCCTCGAACACCATCGTCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
40251520 ATGTGCGGGA-CCATCGGACACCACCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTC-GG
* ** * * *
40251563 TTGTGCGACAGCATCAGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * * * *
40251606 ATGTGCGAGAGCATCGGACACCATAGGCACCATGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * ** * *
40251649 ATGTGCGGCAGCATCGGATGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
* * ** * * *
40251692 -GGTGCGGGA-CCATCGGAAATAATCGACACCTTGGTACCTCAG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTCGG
* * * *
40251734 ATGTGCGGGAACATCGGGA-ACTATTGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCCTC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * * **
40251777 ATGTGCGAGAGCATCGGACACCATCGGTAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
40251820 -TGGTGCGGGA-CCATCAGGA-AGCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * * * *
40251863 ATGAGC-GAAGCCATCGGGCACCATCGGTAACTAAGGT-CGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCT-TGGTGC-CTCGG
** * *
40251906 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCTTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGC-CTCGG
* * * **
40251949 ATGTGCGGGAGCATCGGGCACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* * * * *
40251992 -TGGTGCGGGAACGTCGGGCAGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGG
* * * * *
40252035 ATGTGCGGGAGCATCAGACACCATCGGTAACTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
** * * *
40252078 -TGGTTTGGGA-CCGTCGGGA-AGCATCGGTACCTTGGTGCCTAGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * *** * *
40252121 ATGTGCGAGAGCATCGGACACCATCCATAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
40252164 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * ** *
40252207 ATGTGCGGTA-CCATTGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC--TCGGACACCATCGGCACCTTGGTGCC-TCGG
* * *
40252250 ATGTGTGGGTGCCTCGGACACCATCTGCACC----T---T-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * * *
40252285 ATGTGTGGGAGCATCGGACACCATCGGTACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
40252328 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTG-CTCTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * *
40252371 TTGTGCTGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40252414 ATGTGCGGGAGCCTCGGACACCATCGGTACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
40252457 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40252500 ATGTGC-GGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
40252542 ATGTGCGGGAGCATCGG
1 ATGTGCGGGAGCCTCGG
40252559 GCTAAAGATA
Statistics
Matches: 843, Mismatches: 163, Indels: 152
0.73 0.14 0.13
Matches are distributed among these distances:
35 29 0.03
39 2 0.00
41 5 0.01
42 109 0.13
43 643 0.76
44 55 0.07
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:40251584 original size:86 final size:86
Alignment explanation
Indices: 40251434--40252558 Score: 795
Period size: 86 Copynumber: 13.2 Consensus size: 86
40251424 TGTTCCAAAC
* * * *
40251434 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTG-CCTCGGATGTGCGGGAGCCTCGAACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCATCGGACAC
*
40251498 CATCGTCACCTTGGTGCCTTGG
65 CATCGGCACCTTGGTGCCTTGG
* * * ** *
40251520 ATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCCTGGTTGTGCGACAGCATCAGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACACC
* *
40251585 ATCGGTACCTTGGTGCCCTGG
66 ATCGGCACCTTGGTGCCTTGG
* * * * * **
40251606 ATGTGCGAGAGCATCGGACACCATAGGCACCATGGTGCCTTGGATGTGCGGCAGCATCGGATGCC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACACC
* **
40251671 TTCGGCACCTTAGGT-CGATGG
66 ATCGGCACCTT-GGTGCCTTGG
* * * ** * * * *
40251692 -GGTGCGGGACCATCGGAAATAATCGACACCTTGGT-ACCTCAGATGTGCGGGAACATCGGGA-A
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCATC-GGACA
* * *
40251754 CTATTGGCACCTTGGTGCCTTCG
64 CCATCGGCACCTTGGTGCCTTGG
* * * ** * *
40251777 ATGTGCGAGAGCATCGGACACCATCGGTAACTCAG-GCCGGTGG-TGGTGCGGGACCATCAGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGGAT-GTGCGGGAGCATC-GGAC
* *
40251839 AGCATCGGCACCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTTGG
* * * * * * ** *
40251863 ATGAGC-GAAGCCATCGGGCACCATCGGTAACTAAGGT-CGATGG-TGGTGCGGGACCATCGGGA
1 ATGTGCGGGAG-CATCGGACACCATCGGCACCT-TGGTGCCCTGGAT-GTGCGGGAGCATC-GGA
** * * *
40251925 -AGTATCGGCACCATGGTGCTTTCG
62 CACCATCGGCACCTTGGTGCCTTGG
* * ** * * * *
40251949 ATGTGCGGGAGCATCGGGCACCATCGGCAACTAAG-GCCGATGG-TGGTGCGGGAACGTCGGGCA
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGGAT-GTGCGGGAGCATCGGACA
* * *
40252012 GCATCGGCACCTCGGTGCCTTCG
64 CCATCGGCACCTTGGTGCCTTGG
* * * ** ** * *
40252035 ATGTGCGGGAGCATCAGACACCATCGGTAACTTAGGT-CGATGG-TGGTTTGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTT-GGTGCCCTGGAT-GTGCGGGAGCATC-GGAC
* * *
40252097 AGCATCGGTACCTTGGTGCCTAGG
63 ACCATCGGCACCTTGGTGCCTTGG
* *** * * * *
40252121 ATGTGCGAGAGCATCGGACACCATCCATAACTTAG-GCCGATGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGGAT-GTGCGGGAGCATC-GGAC
* *
40252183 ATCATCGGCACCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTTGG
* * * ** * * * * * *
40252207 ATGTGCGGTACCATTGGGA-AGTATCGGCACCATGGTGCCTTCGATGTGTGGGTGCCTCGGACAC
1 ATGTGCGGGAGCA-TCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACAC
*
40252271 CATCTGCA--------CCTTGG
65 CATCGGCACCTTGGTGCCTTGG
* * *
40252285 ATGTGTGGGAGCATCGGACACCATCGGTACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACACC
40252350 ATCGGCACCTTGGTG-CTCTGG
66 ATCGGCACCTTGGTGCCT-TGG
* * *
40252371 TTGTGCTGGAGCATCGGACACCATCGGCACCTTGGTG-CCTCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCATCGGACAC
* * *
40252435 CATCGGTACCTTGGTGCCTCGC
65 CATCGGCACCTTGGTGCCTTGG
*
40252457 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTG-CCTCGGATGTGC-GGAGCATCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCATCGGACAC
40252520 CATCGGCACCTTGGTGCCTTGG
65 CATCGGCACCTTGGTGCCTTGG
40252542 ATGTGCGGGAGCATCGG
1 ATGTGCGGGAGCATCGG
40252559 GCTAAAGATA
Statistics
Matches: 829, Mismatches: 173, Indels: 75
0.77 0.16 0.07
Matches are distributed among these distances:
77 4 0.00
78 59 0.07
84 5 0.01
85 118 0.14
86 617 0.74
87 26 0.03
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (86 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTTGG
Found at i:40251770 original size:128 final size:129
Alignment explanation
Indices: 40251605--40251870 Score: 297
Period size: 128 Copynumber: 2.1 Consensus size: 129
40251595 TGGTGCCCTG
* * **
40251605 GATGTGCGAGAGCATCGGACACCATAGGCACCATGGTGCCTTGGATGTGCG-GCAGCATCGGATG
1 GATGTGCGAGAACATCGGACACCATAGGCACCATGGTGCCTTCGATGTGCGAG-AGCATCGGACA
* * * * *
40251669 CCTTCGGCACCTTAGGTCGATGG-GGTGCGGGACCATC-GGAAATAATCGACACCTTGGTACCTC
65 CCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCAGG-AAGAATCGACACCTTGGTACCTC
40251732 A
129 A
* * * *
40251733 GATGTGCGGGAACATCGGGA-ACTATTGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACA
1 GATGTGCGAGAACATC-GGACACCATAGGCACCATGGTGCCTTCGATGTGCGAGAGCATCGGACA
* * * * * *
40251797 CCATCGGTAACTCAGGCCGGTGGTGGTGCGGGACCATCAGGAAGCATCGGCACCTTGGTGCCTCG
65 CCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCAGGAAGAATCGACACCTTGGTACCTCA
*
40251862 GATGAGCGA
1 GATGTGCGA
40251871 AGCCATCGGG
Statistics
Matches: 113, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
128 67 0.59
129 44 0.39
130 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.34, T:0.20
Consensus pattern (129 bp):
GATGTGCGAGAACATCGGACACCATAGGCACCATGGTGCCTTCGATGTGCGAGAGCATCGGACAC
CATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCAGGAAGAATCGACACCTTGGTACCTCA
Found at i:40251858 original size:214 final size:215
Alignment explanation
Indices: 40251499--40251977 Score: 490
Period size: 214 Copynumber: 2.2 Consensus size: 215
40251489 CTCGAACACC
* * * *
40251499 ATCGTCACCTTGGTGCCTTGGATGTGCGGGACCATC-GGACACCACCGGCACCTTGGTGCCCTGG
1 ATCGACACCTTGGTGCC-TCGATGTGCGGGAACATCGGGACACCACCGGCACCTTGGTGCCCTCG
* * ** *
40251563 TTGTGCGACAGCATCAGACACCATCGGTACCTTGGTGCCCTGGATGTGCGAGAGCATCGGACACC
65 ATGTGCGACAGCATCAGACACCATCGGTAACTCAGTGCCCTGGATGTGCGAGACCATCGGACACC
* * * ** * * *
40251628 ATAGGCACCATGGTGCCTTGGATGTGCGGCAG-CATCGGATGCCTTCGGCACCTTAGGTCGATGG
130 ATAGGCACCATGGTGCCTCGGATGAGC-GAAGCCATCGGACACCATCGGCAACTAAGGTCGATGG
40251692 -GGTGCGGGACCATC-GGAAAT
194 TGGTGCGGGACCATCGGGAAAT
* * ** *
40251712 AATCGACACCTTGGTACCTCAGATGTGCGGGAACATCGGGA-ACTATTGGCACCTTGGTGCCTTC
1 -ATCGACACCTTGGTGCCTC-GATGTGCGGGAACATCGGGACACCACCGGCACCTTGGTGCCCTC
* * * *
40251776 GATGTGCGAGAGCATCGGACACCATCGGTAACTCAG-GCCGGTGG-TGGTGCGGGACCATCAGGA
64 GATGTGCGACAGCATCAGACACCATCGGTAACTCAGTGCC-CTGGAT-GTGCGAGACCATC-GGA
* * * * *
40251839 -AGCATCGGCACCTTGGTGCCTCGGATGAGCGAAGCCATCGGGCACCATCGGTAACTAAGGTCGA
126 CACCATAGGCACCATGGTGCCTCGGATGAGCGAAGCCATCGGACACCATCGGCAACTAAGGTCGA
*
40251903 TGGTGGTGCGGGACCATCGGGAAGT
191 TGGTGGTGCGGGACCATCGGGAAAT
* * * * *
40251928 ATCGGCACCATGGTGCTTTCGATGTGCGGGAGCATCGGG-CACCATCGGCA
1 ATCGACACCTTGGTGC-CTCGATGTGCGGGAACATCGGGACACCACCGGCA
40251978 ACTAAGGCCG
Statistics
Matches: 216, Mismatches: 39, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
213 8 0.04
214 142 0.66
215 59 0.27
216 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.33, T:0.20
Consensus pattern (215 bp):
ATCGACACCTTGGTGCCTCGATGTGCGGGAACATCGGGACACCACCGGCACCTTGGTGCCCTCGA
TGTGCGACAGCATCAGACACCATCGGTAACTCAGTGCCCTGGATGTGCGAGACCATCGGACACCA
TAGGCACCATGGTGCCTCGGATGAGCGAAGCCATCGGACACCATCGGCAACTAAGGTCGATGGTG
GTGCGGGACCATCGGGAAAT
Found at i:40269407 original size:3 final size:3
Alignment explanation
Indices: 40269399--40269423 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
40269389 TCTAAGCAAA
40269399 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
40269424 AATTTGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:40269484 original size:3 final size:3
Alignment explanation
Indices: 40269478--40269506 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
40269468 ATAATAATAA
40269478 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
40269507 ACTTTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:40269808 original size:43 final size:43
Alignment explanation
Indices: 40269738--40271017 Score: 574
Period size: 43 Copynumber: 29.7 Consensus size: 43
40269728 TGGGCCGATG
* ***
40269738 GATGTGCGGGACCATCAGGAGGTATCGGCACCTTGGTGCCTTC
1 GATGTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
* * * * ** *
40269781 GATGTGCGGGAGCGTC-GAACACCATCGGCAACTCAG-GCCGAT-
1 GATGTGCGGGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TTC
* * * **
40269823 GGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAG
1 GAT-GTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
** * * *
40269867 GATGTGCAAGAGCATC-GGACACCATCGGCTA-CTTAG-GCCGAT-
1 GATGTGCGGGACCATCGGGA-ACCATCGGC-ACCTTGGTGCC-TTC
* *
40269909 GGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCC-TC
1 GAT-GTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
** *
40269952 GGATGTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTC
1 -GATGTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
* * * ** *
40269996 GATGTGCGGGAGCATC-GAACACCATCGGCAACTAAG-GCCGAT-
1 GATGTGCGGGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TTC
* * *
40270038 GGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCC-TC
1 GAT-GTGCGGGACCATCGGG-AACCATCGGCACCTTGGTGCCTTC
* * * ** * *** *
40270082 GGATGTGCGAGAGCATCGGGCACCATCGATAACAAAG-GCCGAT-
1 -GATGTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCC-TTC
* * * **
40270125 GGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAG
1 GAT-GTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
** * **
40270169 GATGTGCAAGAGCATC-GGACACCATCGGCTA-CTCAG-G-C--C
1 GATGTGCGGGACCATCGGGA-ACCATCGGC-ACCTTGGTGCCTTC
40270208 GATGGTG-GTGCG-CCATCGGGAACCATCGGCACCTTGGTGCC-TC
1 GAT-GTGCG-G-GACCATCGGGAACCATCGGCACCTTGGTGCCTTC
** *
40270251 GGATGTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTC
1 -GATGTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
* * ** *
40270295 GATGTGCGGGAGCATC-GGACACCATCGGCAACTAAG-GCCGAT-
1 GATGTGCGGGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TTC
* * *
40270337 GGTGGTGCGGGACCATCGGGAAGCATCAGCACCTTGGTGCC-TC
1 GAT-GTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
**
40270380 GGATGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC
1 -GATGTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
* * * ** *
40270424 GATGTGCGGGAGCATC-GAACACCATCGGCAACTAAG-GCCGAT-
1 GATGTGCGGGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TTC
* * *
40270466 GGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCC-TC
1 GAT-GTGCGGGACCATCGGG-AACCATCGGCACCTTGGTGCCTTC
* * * ** * *** *
40270510 GGATGTGCGAGAGCATCGGGCACCATCGATAACAAAG-GCCGAT-
1 -GATGTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCC-TTC
* ** *
40270553 GGTGGTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTC
1 GAT-GTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
* * ** *
40270597 GATGTGCGGGAGCATC-GGACACCATCGGCAACTAAG-GCCGAT-
1 GATGTGCGGGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TTC
* *
40270639 GGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TC
1 GAT-GTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
**
40270682 GGATGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC
1 -GATGTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
* * * ** *
40270726 GATGTGCGGGAGCATC--GACACCATCGGTAACTCAG-GCCGAT-
1 GATGTGCGGGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TTC
* * * * *
40270767 GGTGGTGCGAGACCATC-GGAAGCATCGGCACCATCGGCAACTAAGGCCGAT-
1 GAT-GTGCGGGACCATCGGGAACCATCGGCACC-TTGG----T---GCC-TTC
* *
40270818 GGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TC
1 GAT-GTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
* *
40270861 GATGTGCGGGAGCATC-GGACACCATCGGCACCTAGGTGCC-TC
1 GATGTGCGGGACCATCGGGA-ACCATCGGCACCTTGGTGCCTTC
* * * *
40270903 GAATGTGCGGGAGCATC-GGACACCATCGGCAACTTTG-GCCGAT-
1 G-ATGTGCGGGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TTC
* * * *
40270946 GGTGGTGCGGGACCATCGGGAAGCATCGGGACCTAGGTGCCTT-
1 GAT-GTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
* *
40270989 GCATGTGCGGGAGCAT-GGGACACCGTCGG
1 G-ATGTGCGGGACCATCGGGA-ACCATCGG
40271018 GCCAAAAAAA
Statistics
Matches: 931, Mismatches: 210, Indels: 192
0.70 0.16 0.14
Matches are distributed among these distances:
39 4 0.00
40 19 0.02
41 16 0.02
42 138 0.15
43 581 0.62
44 120 0.13
45 12 0.01
47 1 0.00
51 25 0.03
52 15 0.02
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
GATGTGCGGGACCATCGGGAACCATCGGCACCTTGGTGCCTTC
Found at i:40270603 original size:428 final size:430
Alignment explanation
Indices: 40269827--40270890 Score: 1710
Period size: 428 Copynumber: 2.5 Consensus size: 430
40269817 GCCGATGGTG
* * ** **
40269827 GTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* * * *
40269892 CGGCTACTTAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATG
66 CGGCAACTAAGGCCGATGGTGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
*
40269957 TGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATC
131 TGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATC
40270022 GGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGATG
196 GGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGATG
*
40270087 TGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATC
261 TGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATC
* * * *
40270152 GGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCATCGGCTACTCAGGCCGATGGTGGT
326 GGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGT
40270217 GC-G-CCATCGGGAACCATCGGCACCTTGGTGCCTCGGAT
391 GCGGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGAT
*
40270255 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
40270320 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCAGCACCTTGGTGCCTCGGATG
66 CGGCAACTAAGGCCGATGGTGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
40270385 TGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATC
131 TGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATC
40270450 GGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGATG
196 GGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGATG
*
40270515 TGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTATC
261 TGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATC
* **
40270580 GGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGT
326 GGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGT
*
40270645 GCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGAT
391 GC-GGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGAT
40270686 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* * *
40270750 CGGTAACTCAGGCCGATGGTGGTGCGAGACCATC-GGAAGCATCGGCACCATCGGCAACTAAGGC
66 CGGCAACTAAGGCCGATGGTGGTGCGAGACCATCGGGAAGCATCGGCACC-TTGG----T---GC
*
40270814 CGAT-GG-TGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGATGTGCGGGAGCAT
123 C--TCGGAT-GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCAT
*
40270876 CGGACACCATCGGCA
185 CGAACACCATCGGCA
40270891 CCTAGGTGCC
Statistics
Matches: 591, Mismatches: 31, Indels: 19
0.92 0.05 0.03
Matches are distributed among these distances:
428 370 0.63
429 14 0.02
430 43 0.07
431 89 0.15
434 1 0.00
437 35 0.06
438 38 0.06
439 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (430 bp):
GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATC
GGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATC
GGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGT
GCGGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGAT
Found at i:40270799 original size:51 final size:52
Alignment explanation
Indices: 40270732--40270850 Score: 188
Period size: 51 Copynumber: 2.3 Consensus size: 52
40270722 CTTCGATGTG
* * *
40270732 CGGG-AGCATCGACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCAT
1 CGGGAAGCATCGGCACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
*
40270783 C-GGAAGCATCGGCACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCAT
1 CGGGAAGCATCGGCACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
40270834 CGGGAAGCATCGGCACC
1 CGGGAAGCATCGGCACC
40270851 TTGGTGCCTC
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
50 2 0.03
51 45 0.73
52 15 0.24
ACGTcount: A:0.24, C:0.29, G:0.34, T:0.13
Consensus pattern (52 bp):
CGGGAAGCATCGGCACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
Found at i:40270841 original size:179 final size:181
Alignment explanation
Indices: 40270603--40270974 Score: 603
Period size: 179 Copynumber: 2.1 Consensus size: 181
40270593 CTTCGATGTG
40270603 CGGG-AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
** *
40270667 GCACCTTGGTGCCTCGGATGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCG-ATG
66 GCACCTTGGTGCCTC-GATGTGCGGGACCATC-GGACACCATCGGCACCTAGGTGCC-TCGAATG
*
40270730 TGCGGGAGCATC-GACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCAT
128 TGCGGGAGCATCGGACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
40270783 C-GGAAGCATCGG-CACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
*
40270846 GCACCTTGGTGCCTCGATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTGC
66 GCACCTTGGTGCCTCGATGTGCGGGACCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTGC
** *
40270911 GGGAGCATCGGACACCATCGGCAACTTTGGCCGATGGTGGTGCGGGACCAT
131 GGGAGCATCGGACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
40270962 CGGGAAGCATCGG
1 CGGGAAGCATCGG
40270975 GACCTAGGTG
Statistics
Matches: 179, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
177 6 0.03
178 47 0.26
179 106 0.59
180 20 0.11
ACGTcount: A:0.20, C:0.27, G:0.36, T:0.17
Consensus pattern (181 bp):
CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
GCACCTTGGTGCCTCGATGTGCGGGACCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTGC
GGGAGCATCGGACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
Found at i:40270985 original size:128 final size:128
Alignment explanation
Indices: 40270787--40271017 Score: 383
Period size: 128 Copynumber: 1.8 Consensus size: 128
40270777 GACCATCGGA
40270787 AGCATCGGCACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCT
1 AGCATCGGCACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCT
*
40270852 TGGTGCCTCG-ATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTGCGGG
66 AGGTGCCTCGCATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTGCGGG
** *
40270914 AGCATCGGACACCATCGGCAACTTTGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGGACC
1 AGCATCGG-CACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACC
* * *
40270979 TAGGTGCCTTGCATGTGCGGGAGCATGGGACACCGTCGG
65 TAGGTGCCTCGCATGTGCGGGAGCATCGGACACCATCGG
40271018 GCCAAAAAAA
Statistics
Matches: 95, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
127 8 0.08
128 62 0.65
129 25 0.26
ACGTcount: A:0.19, C:0.27, G:0.36, T:0.17
Consensus pattern (128 bp):
AGCATCGGCACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCT
AGGTGCCTCGCATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTGCGGG
Found at i:40271715 original size:43 final size:43
Alignment explanation
Indices: 40271654--40272769 Score: 777
Period size: 43 Copynumber: 26.4 Consensus size: 43
40271644 TGTTCCAGAC
*
40271654 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
40271697 ATGTGCGGGAGCCTCGGACACCATCGTCAACTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40271740 ATGTGCGGGA-CCATCGGACACCACCGGCACCCTGGTGCCAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC-TCGG
* ** * *
40271783 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * * * *
40271826 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
** *
40271869 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCGTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
40271912 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
40271955 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
40271998 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCTCCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * **
40272041 ATGTGCGAG-GCCATCGGGCACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
40272084 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * **
40272127 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
40272170 -TGGTGCGGGA-CCGTCGAGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TCG-GACACCATCGGCACCTTGGTGCC-TCGG
* * * * **
40272213 ATGTGCGGGAGCATCGG-CAACTTAGGC-CGATGGTG--T---
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40272249 -T-T--GGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
40272288 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
40272331 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* ** *
40272374 ATGTGCGGGA-CCATTGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC--TCGGACACCATCGGCACCTTGGTGCC-TCGG
* *
40272417 ATGTGCGGGTGCCTCGGACACCATCGGCA------T--CTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40272452 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40272495 ATGTGCGGGGGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
40272538 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
*
40272581 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
40272624 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
40272667 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40272710 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
40272753 ATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCCTCGG
40272770 GCTAAAAATA
Statistics
Matches: 860, Mismatches: 128, Indels: 170
0.74 0.11 0.15
Matches are distributed among these distances:
31 1 0.00
32 6 0.01
33 8 0.01
34 8 0.01
35 30 0.03
36 1 0.00
37 1 0.00
38 1 0.00
40 1 0.00
41 7 0.01
42 51 0.06
43 696 0.81
44 49 0.06
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:40271800 original size:86 final size:85
Alignment explanation
Indices: 40271654--40272762 Score: 905
Period size: 86 Copynumber: 13.1 Consensus size: 85
40271644 TGTTCCAGAC
* *
40271654 ATGTGCGAGAGCC-TCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGA-CCATCGGACACCATCGGCACCTTGGTGCCT-GGATGTGCGGGAGCATCGGACAC
* *
40271718 CATCGTCAACTTGGTGCCTTGG
64 CATCGGCACCTTGGTGCCTTGG
* * * **
40271740 ATGTGCGGGACCATCGGACACCACCGGCACCCTGGTGCCATGGTTGTGCGACAGCATCGGACACC
1 ATGTGCGGGACCATCGGACACCATCGGCACCTTGGTGCC-TGGATGTGCGGGAGCATCGGACACC
* *
40271805 ATCGGTACCTTGGTGCCCTGG
65 ATCGGCACCTTGGTGCCTTGG
* * * * * *
40271826 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGATGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGACCATCGGACACCATCGGCACCTT-GGTGC-CTGGAT-GTGCGGGAGCATC-GGAC
** * *
40271888 ATAATCGGCACCTTGGTGCGTCGG
62 ACCATCGGCACCTTGGTGCCTTGG
** * *
40271912 ATGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACAC
1 ATGTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCC-TGGATGTGCGGGAGCATCGGACAC
* ** *
40271976 CATCGGCAACTCAG-GCCGGTGG
64 CATCGGCACCTTGGTGCC-TTGG
* * * *
40271998 -TGGTGCGGGACCATCGGGA-AGCATCGGCTCCTTGGTGCCTCGGATGTGCGAGG-CCATCGGGC
1 AT-GTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCT-GGATGTGCG-GGAGCATCGGAC
* * ** *
40272060 ACCATCGGTAACTAAG-GCCGATGG
62 ACCATCGGCACCTTGGTGCC-TTGG
** * *
40272084 -TGGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACA
1 AT-GTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCC-TGGATGTGCGGGAGCATCGGACA
* ** *
40272147 CCATCGGCAACTAAG-GCCGATGG
63 CCATCGGCACCTTGGTGCC-TTGG
* * * *
40272170 -TGGTGCGGGACCGTCGAGA-AGCATCGGCACCTCGGTGCCTTCGATGTGCGGGAGCATCGG-CA
1 AT-GTGCGGGACCATCG-GACACCATCGGCACCTTGGTGCC-TGGATGTGCGGGAGCATCGGACA
* * * **
40272232 ACTTAGGC-CGATGGTG---T--
63 CCATCGGCACCTTGGTGCCTTGG
* * *
40272249 -T-T--GGGACCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGGATGTGCGAGAGCATCGGACAC
1 ATGTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCT-GGATGTGCGGGAGCATCGGACAC
* * * *
40272309 CATCGGTAACTTAG-GCCGATGG
64 CATCGGCACCTTGGTGCC-TTGG
* * *
40272331 -TGGTGCGGGACCATCGGGA-ATCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCATTGGGA-
1 AT-GTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCT-GGATGTGCGGGAGCA-TCGGAC
** * *
40272393 AGTATCGGCACCATGGTGCCTTCG
62 ACCATCGGCACCTTGGTGCCTTGG
* *
40272417 ATGTGCGGGTGCC-TCGGACACCATCGGCA------T-CTTGGATGTGCGGGAGCATCGGACACC
1 ATGTGCGGG-ACCATCGGACACCATCGGCACCTTGGTGCCTGGATGTGCGGGAGCATCGGACACC
40272474 ATCGGCACCTTGGTGCCTTGG
65 ATCGGCACCTTGGTGCCTTGG
** *
40272495 ATGTGCGGGGGCATCGGACACCATCGGCACCTTGGTGCCCTGGTTGTGCGGGAGCATCGGACACC
1 ATGTGCGGGACCATCGGACACCATCGGCACCTTGGTG-CCTGGATGTGCGGGAGCATCGGACACC
*
40272560 ATCGGCACCTTGGTGCCCTGG
65 ATCGGCACCTTGGTGCCTTGG
* *
40272581 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGTCTCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGA-CCATCGGACACCATCGGCACCTTGGTGCCT-GGATGTGCGGGAGCATCGGACAC
* *
40272645 CATCGGCACCTTGGTGCCTCGC
64 CATCGGCACCTTGGTGCCTTGG
40272667 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACAC
1 ATGTGCGGGA-CCATCGGACACCATCGGCACCTTGGTGCCT-GGATGTGCGGGAGCATCGGACAC
40272731 CATCGGCACCTTGGTGCCTTGG
64 CATCGGCACCTTGGTGCCTTGG
40272753 ATGTGCGGGA
1 ATGTGCGGGA
40272763 GCGTCGGGCT
Statistics
Matches: 850, Mismatches: 123, Indels: 100
0.79 0.11 0.09
Matches are distributed among these distances:
74 1 0.00
75 47 0.06
76 8 0.01
77 9 0.01
78 59 0.07
79 3 0.00
80 2 0.00
81 1 0.00
82 1 0.00
84 3 0.00
85 29 0.03
86 663 0.78
87 24 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (85 bp):
ATGTGCGGGACCATCGGACACCATCGGCACCTTGGTGCCTGGATGTGCGGGAGCATCGGACACCA
TCGGCACCTTGGTGCCTTGG
Found at i:40271818 original size:129 final size:128
Alignment explanation
Indices: 40271654--40272762 Score: 895
Period size: 129 Copynumber: 8.8 Consensus size: 128
40271644 TGTTCCAGAC
* * *
40271654 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
* * * *
40271719 ATCGTCAACTTGGTGCCTTGGATGTGCGGGACCATCGGACACCACCGGCACCCTGGTGCCAT-GG
66 ATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGGA-ACCATCGGCACCTTGGTGCC-TCGG
* ** * * *
40271783 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGGATGTGCGGCAGCATCGGACGC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCATCGGACAC
* ** ** *
40271847 CTTCGGCACCTTAGGT-CGATGG-TGGTGCGGGACCATCGGGAATAATCGGCACCTTGGTGCGTC
65 CATCGGCACCTT-GGTGCCTTGGAT-GTGCGGGACCATC-GGAACCATCGGCACCTTGGTGCCTC
40271910 GG
127 GG
* ** *
40271912 ATGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-GATGTGCGAGAGCATCGGACA
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCATCGGACA
* ** * * *
40271975 CCATCGGCAACTCAG-GCCGGTGG-TGGTGCGGGACCATCGGGAAGCATCGGCTCCTTGGTGCCT
64 CCATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGACCATC-GGAACCATCGGCACCTTGGTGCCT
40272038 CGG
126 CGG
* * * * ** *
40272041 ATGTGCGAGG-CCATCGGGCACCATCGGTAACTAAG-GCCGAT-GG-TGGTGCGGGACCATCGGG
1 ATGTGCG-GGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGGAT-GTGCGGGAGCATC-GG
** * * * * **
40272102 A-AGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCC
61 ACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGGA-ACCATCGGCACCTTGGTGCC
40272165 GAT-GG
125 --TCGG
* * * *
40272170 -TGGTGCGGGACCGTCGAGA-AGCATCGGCACCTCGGTGCCTTC-GATGTGCGGGAGCATCGG-C
1 AT-GTGCGGGAGCATCG-GACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCATCGGAC
* * * ** * * *
40272231 AACTTAGGC-CGATGGTG---T---T-T--GGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTA
63 ACCATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATC-GGAACCATCGGCACCTTGGTGCCTC
40272286 GG
127 GG
* * * * *
40272288 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG-TGGTGCGGGACCATCGGGA
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGGAT-GTGCGGGAGCATC-GGA
* * * ** *
40272350 -ATCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCATTGGGAAGTATCGGCACCATGGTGCCT
62 CACCATCGGCACCTTGGTGCCTTGGATGTGCGGGACCA-TCGGAACCATCGGCACCTTGGTGCC-
40272414 TC-G
125 TCGG
* * *
40272417 ATGTGCGGGTGCCTCGGACACCATCGGCA------T--CTTGGATGTGCGGGAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
**
40272474 ATCGGCACCTTGGTGCCTTGGATGTGCGGGGGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGGA-ACCATCGGCACCTTGGTGCCTC-GG
* *
40272538 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCATCGGACAC
* *
40272602 CATCGGCACCTTGGTGTCTCGGATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTCG
65 CATCGGCACCTTGGTGCCTTGGATGTGCGGGA-CCATCGGA-ACCATCGGCACCTTGGTGCCTCG
*
40272666 C
128 G
*
40272667 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
40272732 ATCGGCACCTTGGTGCCTTGGATGTGCGGGA
66 ATCGGCACCTTGGTGCCTTGGATGTGCGGGA
40272763 GCGTCGGGCT
Statistics
Matches: 781, Mismatches: 130, Indels: 138
0.74 0.12 0.13
Matches are distributed among these distances:
117 7 0.01
118 57 0.07
119 16 0.02
120 15 0.02
121 92 0.12
122 2 0.00
124 1 0.00
126 1 0.00
127 9 0.01
128 27 0.03
129 524 0.67
130 29 0.04
131 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (128 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGGAACCATCGGCACCTTGGTGCCTCGG
Found at i:40272274 original size:75 final size:76
Alignment explanation
Indices: 40272148--40272380 Score: 245
Period size: 75 Copynumber: 2.9 Consensus size: 76
40272138 CATCGGACAC
*
40272148 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTTCG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
*
40272213 ATGTGCGGGAG
66 ATGTGCGAGAG
* ** * * *
40272224 CATCGGCAACTTAGGCCGATGGT-GTTTGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
40272288 ATGTGCGAGAG
66 ATGTGCGAGAG
* * * *
40272299 CATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAATCATCGGCACCTT
1 CATCGG-CA--A-C--T-A---AGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTC
40272364 GGTGCCT-CGGATGTGCG
56 GGTGCCTAC-GATGTGCG
40272381 GGACCATTGG
Statistics
Matches: 131, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
75 51 0.39
76 24 0.18
78 1 0.01
79 1 0.01
81 1 0.01
85 11 0.08
86 42 0.32
ACGTcount: A:0.18, C:0.25, G:0.36, T:0.20
Consensus pattern (76 bp):
CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
ATGTGCGAGAG
Found at i:40280283 original size:3 final size:3
Alignment explanation
Indices: 40280275--40280299 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
40280265 TCTAAGCAAA
40280275 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
40280300 AATTTGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:40280360 original size:3 final size:3
Alignment explanation
Indices: 40280354--40280382 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
40280344 ATAATAATAA
40280354 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
40280383 ACTTTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:40280658 original size:43 final size:43
Alignment explanation
Indices: 40280600--40281176 Score: 312
Period size: 43 Copynumber: 13.2 Consensus size: 43
40280590 ACAATCGGAC
* *
40280600 ACCATCGACAACTTGG-GCCGATGGATGTGCGGGACCATCGGGA
1 ACCATCGGCACCTTGGTGCC-ATGGATGTGCGGGACCATCGGGA
*** * * * *
40280643 GGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAA
1 ACCATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
* **
40280685 CACCATCGGCAACTCAG-GCCGATGG-TGGTGCGGGACCATCGGGA
1 -ACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGA
* ** *
40280729 AGCATCGGCACCTTGGTGCC-TAGGATGTGCAAGAGCATC-GGA
1 ACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA
** *
40280771 CACCATCGGCTA-CTCAG-GCCGATGG-TGGTGCGCGACCATCGGGA
1 -ACCATCGGC-ACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGA
40280815 ACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGA
1 ACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA
** * * * *
40280858 AGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAA
1 ACCATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
* * ** *
40280900 CACCATCGGTAACTCAG-GCCGATGG-TGGTGCGAGACCATCGGGA
1 -ACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGA
* *
40280944 AGCATCGGACACCATCGGCAACTAAGGCCGATGG-TGGTGCGGGACCATCGGGA
1 ACCATCGG-CACC-TTGG----T---GCC-ATGGAT-GTGCGGGACCATCGGGA
* * * *
40280997 AGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GGA
1 ACCATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
* * *
40281039 CACCATCGGCACCTAGGTGCC-TCGAATGTGCGGGAGCATC-GGA
1 -ACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA
* *
40281082 CACCATCGGCAACTTTG-GCCGATGG-TGGTGCGGGACCATCGGGA
1 -ACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGA
* * * * * *
40281126 AGCATCGGGACCTAGGTGCCTTGCATGTGCGGGAGCAT-GGGA
1 ACCATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
*
40281168 CACCGTCGG
1 -ACCATCGG
40281177 GCCAAAAAAA
Statistics
Matches: 412, Mismatches: 79, Indels: 86
0.71 0.14 0.15
Matches are distributed among these distances:
42 34 0.08
43 298 0.72
44 35 0.08
45 3 0.01
47 1 0.00
51 3 0.01
52 4 0.01
53 34 0.08
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
ACCATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
Found at i:40280716 original size:86 final size:86
Alignment explanation
Indices: 40280593--40281049 Score: 428
Period size: 86 Copynumber: 5.2 Consensus size: 86
40280583 ATCGGACACA
* ** * *
40280593 ATCGGACACCATCGACAACTTGGGCCGATGGAT-GTGCGGGACCATCGGGAGGTATCGGCACCTT
1 ATCGGACACCATCGGCAACTCAGGCCGATGG-TGGTGCGGGACCATCGGGAAGCATCGGCACCTT
40280657 GGTGCCTTCGATGTGCGGGAGC
65 GGTGCCTTCGATGTGCGGGAGC
*
40280679 ATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTG
1 ATCGGACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTG
** **
40280744 GTGCCTAGGATGTGCAAGAGC
66 GTGCCTTCGATGTGCGGGAGC
* * *
40280765 ATCGGACACCATCGGCTACTCAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTG
1 ATCGGACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTG
*
40280830 GTGCC-TCGGATGTGCGGGACC
66 GTGCCTTC-GATGTGCGGGAGC
** * ** * * * * *
40280851 ATCGGGA-AGTATCGGCACCTTGGTGCC-TTCGAT-GTGCGGGAGCATC-GAACACCATCGGTAA
1 ATC-GGACACCATCGGCAACTCAG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGCATCGG---
* * *
40280912 CTCAGGCCGATGGTG-GTGCGA-GACCAT-CGGGAAGC
59 --CA--CC-TTGGTGCCTTCGATG----TGCGGG-AGC
*
40280947 ATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTG
1 ATCGGACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTG
40281012 GTGCCTTCGATGTGCGGGAGC
66 GTGCCTTCGATGTGCGGGAGC
40281033 ATCGGACACCATCGGCA
1 ATCGGACACCATCGGCA
40281050 CCTAGGTGCC
Statistics
Matches: 297, Mismatches: 47, Indels: 54
0.75 0.12 0.14
Matches are distributed among these distances:
85 3 0.01
86 204 0.69
87 12 0.04
88 5 0.02
89 6 0.02
90 1 0.00
91 4 0.01
92 1 0.00
93 4 0.01
94 6 0.02
95 12 0.04
96 37 0.12
97 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.34, T:0.18
Consensus pattern (86 bp):
ATCGGACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTG
GTGCCTTCGATGTGCGGGAGC
Found at i:40280823 original size:129 final size:130
Alignment explanation
Indices: 40280684--40281176 Score: 560
Period size: 129 Copynumber: 3.7 Consensus size: 130
40280674 GGAGCATCGA
*
40280684 ACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC
1 ACACCATCGGCAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC
** ** *
40280749 TAGGATGTGCAAGAGCATCGGACACCATCGGCTACTCAGGCCGATGGTGGTGCGCGACCATCGGG
66 TTCGATGTGCGGGAGCATCGGACACCATCGGCTACTCAGGCCGATGGTGGTGCGAGACCATCGGG
* * *
40280814 A-ACCATCGGCACCTTGGTGCC--TCGGAT-GTGCGGGACCATCGGGAAGTATCGGCACCTTGGT
1 ACACCATCGGCAACTTAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGT
*
40280875 GCCTTCGATGTGCGGGAGCATCGAACACCATCGG-TAACTCAGGCCGATGGTGGTGCGAGACCAT
63 GCCTTCGATGTGCGGGAGCATCGGACACCATCGGCT-ACTCAGGCCGATGGTGGTGCGAGACCAT
40280939 CGGGAAGCATCGG
127 C-----G----GG
*
40280952 ACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC
1 ACACCATCGGCAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC
* * *
40281017 TTCGATGTGCGGGAGCATCGGACACCATCGGC-AC-CTAGGTGCC--TCGAAT-GTGCGGGAGCA
66 TTCGATGTGCGGGAGCATCGGACACCATCGGCTACTC-A-G-GCCGAT-G-GTGGTGCGAGACCA
40281077 TC-GG
126 TCGGG
* * *
40281081 ACACCATCGGCAACTTTGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGGACCTAGGTGCC
1 ACACCATCGGCAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC
* *
40281146 TT-GCATGTGCGGGAGCATGGGACACCGTCGG
66 TTCG-ATGTGCGGGAGCATCGGACACCATCGG
40281177 GCCAAAAAAA
Statistics
Matches: 315, Mismatches: 24, Indels: 49
0.81 0.06 0.13
Matches are distributed among these distances:
128 3 0.01
129 195 0.62
130 5 0.02
134 1 0.00
137 1 0.00
138 11 0.03
139 94 0.30
140 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.17
Consensus pattern (130 bp):
ACACCATCGGCAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC
TTCGATGTGCGGGAGCATCGGACACCATCGGCTACTCAGGCCGATGGTGGTGCGAGACCATCGGG
Found at i:40280983 original size:182 final size:182
Alignment explanation
Indices: 40280762--40281133 Score: 579
Period size: 182 Copynumber: 2.0 Consensus size: 182
40280752 GATGTGCAAG
* *
40280762 AGCATCGGACACCATCGGCTACTCAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACC
1 AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACC
** *
40280827 TTGGTGCC-TCGGATGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCG-ATGTGCG
66 TTGGTGCCTTC-GATGTGCGGGACCATC-GGACACCATCGGCACCTAGGTGCC-TCGAATGTGCG
*
40280889 GGAGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCATCGGGA
128 GGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCATCGGGA
* *
40280944 AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACC
1 AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACC
*
40281009 TTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTGCGGGA
66 TTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTGCGGGA
* ** *
40281074 GCATCGGACACCATCGGCAACTTTGGCCGATGGTGGTGCGGGACCATCGGGA
131 GCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCATCGGGA
40281126 AGCATCGG
1 AGCATCGG
40281134 GACCTAGGTG
Statistics
Matches: 174, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
181 6 0.03
182 166 0.95
183 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.35, T:0.17
Consensus pattern (182 bp):
AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACC
TTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTGCGGGA
GCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCATCGGGA
Found at i:40281004 original size:53 final size:53
Alignment explanation
Indices: 40280887--40281008 Score: 194
Period size: 53 Copynumber: 2.3 Consensus size: 53
40280877 CTTCGATGTG
* * *
40280887 CGGG-AGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
*
40280939 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
40280992 CGGGAAGCATCGG-CACC
1 CGGGAAGCATCGGACACC
40281009 TTGGTGCCTT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
52 8 0.12
53 57 0.88
ACGTcount: A:0.25, C:0.28, G:0.34, T:0.13
Consensus pattern (53 bp):
CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
Found at i:40281873 original size:43 final size:43
Alignment explanation
Indices: 40281812--40282927 Score: 779
Period size: 43 Copynumber: 26.4 Consensus size: 43
40281802 TGTTCCAGAC
*
40281812 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
40281855 ATGTGCGGGAGCCTCGGACACCATCGTCAACTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40281898 ATGTGCGGGA-CCATCGGACACCACCGGCACCCTGGTGCC-CTGG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTC-GG
* ** * *
40281941 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * * * * *
40281984 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGAT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
**
40282027 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
40282070 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
40282113 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
40282156 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * **
40282199 ATGTGCGAG-GCCATCGGGCACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
40282242 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
40282285 ATGTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
40282328 -TGGTGCGGGA-CCGTCGAGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TCG-GACACCATCGGCACCTTGGTGCC-TCGG
* * * * **
40282371 ATGTGCGGGAGCATCGG-CAACTTAGGC-CGATGGTG--T---
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40282407 -T-T--GGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
40282446 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
40282489 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* ** *
40282532 ATGTGCGGGA-CCATTGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC--TCGGACACCATCGGCACCTTGGTGCC-TCGG
*
40282575 ATGTGCGGGTGCCTCGGACACCATCGGCACC----T---T-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40282610 ATGTGCAGGAGCCTCGGACACCGTCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
40282653 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
*
40282696 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
40282739 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
40282782 TTGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
40282825 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGCTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40282868 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
40282911 ATGTGCGGGAGCATCGG
1 ATGTGCGGGAGCCTCGG
40282928 GCTAAAAATA
Statistics
Matches: 863, Mismatches: 127, Indels: 166
0.75 0.11 0.14
Matches are distributed among these distances:
31 1 0.00
32 6 0.01
33 8 0.01
34 7 0.01
35 31 0.04
36 1 0.00
38 1 0.00
39 2 0.00
40 1 0.00
41 6 0.01
42 52 0.06
43 700 0.81
44 47 0.05
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:40281958 original size:86 final size:86
Alignment explanation
Indices: 40281812--40282927 Score: 877
Period size: 86 Copynumber: 13.2 Consensus size: 86
40281802 TGTTCCAGAC
* *
40281812 ATGTGCGAGAGCC-TCGGACACCATCGGCACCTTGGTG-CCTCGGATGTGCGGGAGCCTCGGACA
1 ATGTGCGGGA-CCATCGGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCATCGGACA
* *
40281875 CCATCGTCAACTTGGTGCCTTGG
64 CCATCGGCACCTTGGTGCCTTGG
* * * **
40281898 ATGTGCGGGACCATCGGACACCACCGGCACCCTGGTGCCCTGGTTGTGCGACAGCATCGGACACC
1 ATGTGCGGGACCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACACC
* *
40281963 ATCGGTACCTTGGTGCCCTGG
66 ATCGGCACCTTGGTGCCTTGG
* * * * * ** *
40281984 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGAT-CGATGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGACCATCGGACACCATCGGCACCTT-GGTGCCCTGGAT-GTGCGGGAGCATC-GGAC
** *
40282046 ATAATCGGCACCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTTGG
** * * *
40282070 ATGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACAC
1 ATGTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACAC
* ** *
40282134 CATCGGCAACTCAG-GCCGGTGG
65 CATCGGCACCTTGGTGCC-TTGG
* * *
40282156 -TGGTGCGGGACCATCGGGA-AGCATCGGCACCTTGGTG-CCTCGGATGTGCGAGG-CCATCGGG
1 AT-GTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCCT-GGATGTGCG-GGAGCATCGGA
* ** *
40282217 CACCATCGGCAACTAAG-GCCGATGG
62 CACCATCGGCACCTTGGTGCC-TTGG
** * * *
40282242 -TGGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACA
1 AT-GTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACA
* * ** *
40282305 CCATCGGTAACTAAG-GCCGATGG
64 CCATCGGCACCTTGGTGCC-TTGG
* * * * *
40282328 -TGGTGCGGGACCGTCGAGA-AGCATCGGCACCTCGGTGCCTTCGATGTGCGGGAGCATCGG-CA
1 AT-GTGCGGGACCATCG-GACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACA
* * * **
40282390 ACTTAGGC-CGATGGTG---T--
64 CCATCGGCACCTTGGTGCCTTGG
* * *
40282407 -T-T--GGGACCGTCGGGA-AGCATCGGCACCTTGGTG-CCTAGGATGTGCGAGAGCATCGGACA
1 ATGTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCATCGGACA
* * * *
40282466 CCATCGGTAACTTAG-GCCGATGG
64 CCATCGGCACCTTGGTGCC-TTGG
* * *
40282489 -TGGTGCGGGACCATCGGGA-ATCATCGGCACCTTGGTG-CCTCGGATGTGCGGGACCATTGGGA
1 AT-GTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCA-TCGGA
** * *
40282551 -AGTATCGGCACCATGGTGCCTTCG
62 CACCATCGGCACCTTGGTGCCTTGG
* * *
40282575 ATGTGCGGGTGCC-TCGGACACCATCGGCACC----T----TGGATGTGCAGGAGCCTCGGACAC
1 ATGTGCGGG-ACCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACAC
* *
40282631 CGTCGGCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCTTGG
40282653 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACAC
1 ATGTGCGGGA-CCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACAC
*
40282717 CATCGGCACCTTGGTGCCCTGG
65 CATCGGCACCTTGGTGCCTTGG
* * * *
40282739 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGTTGTGCGGGAGCCTCGGACACC
1 ATGTGCGGGACCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACACC
* *
40282804 ATCGGCACCTTGGTGCCTCGC
66 ATCGGCACCTTGGTGCCTTGG
*
40282825 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGCTG-CCTCGGATGTGCGGGAGCATCGGACA
1 ATGTGCGGGA-CCATCGGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCATCGGACA
40282888 CCATCGGCACCTTGGTGCCTTGG
64 CCATCGGCACCTTGGTGCCTTGG
*
40282911 ATGTGCGGGAGCATCGG
1 ATGTGCGGGACCATCGG
40282928 GCTAAAAATA
Statistics
Matches: 846, Mismatches: 134, Indels: 100
0.78 0.12 0.09
Matches are distributed among these distances:
74 2 0.00
75 45 0.05
76 8 0.01
77 7 0.01
78 59 0.07
79 2 0.00
80 1 0.00
81 1 0.00
82 3 0.00
84 2 0.00
85 32 0.04
86 658 0.78
87 26 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (86 bp):
ATGTGCGGGACCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTTGG
Found at i:40281976 original size:129 final size:128
Alignment explanation
Indices: 40281812--40282927 Score: 884
Period size: 129 Copynumber: 8.8 Consensus size: 128
40281802 TGTTCCAGAC
* * *
40281812 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
* * * *
40281877 ATCGTCAACTTGGTGCCTTGGATGTGCGGGACCATCGGACACCACCGGCACCCTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGGA-ACCATCGGCACCTTGGTGCCTC-GG
* ** * * *
40281941 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGGATGTGCGGCAGCATCGGACGC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCATCGGACAC
* * ** **
40282005 CTTCGGCACCTTAGAT-CGATGG-TGGTGCGGGACCATCGGGAATAATCGGCACCTTGGTGCCTC
65 CATCGGCACCTT-GGTGCCTTGGAT-GTGCGGGACCATC-GGAACCATCGGCACCTTGGTGCCTC
40282068 GG
127 GG
* ** *
40282070 ATGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-GATGTGCGAGAGCATCGGACA
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCATCGGACA
* ** * *
40282133 CCATCGGCAACTCAG-GCCGGTGG-TGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCT
64 CCATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGACCATC-GGAACCATCGGCACCTTGGTGCCT
40282196 CGG
126 CGG
* * * ** *
40282199 ATGTGCGAGG-CCATCGGGCACCATCGGCAACTAAG-GCCGAT-GG-TGGTGCGGGACCATCGGG
1 ATGTGCG-GGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGGAT-GTGCGGGAGCATC-GG
** * * * * * **
40282260 A-AGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCC
61 ACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGGA-ACCATCGGCACCTTGGTGCC
40282323 GAT-GG
125 --TCGG
* * * *
40282328 -TGGTGCGGGACCGTCGAGA-AGCATCGGCACCTCGGTGCCTTC-GATGTGCGGGAGCATCGG-C
1 AT-GTGCGGGAGCATCG-GACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCATCGGAC
* * * ** * * *
40282389 AACTTAGGC-CGATGGTG---T---T-T--GGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTA
63 ACCATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATC-GGAACCATCGGCACCTTGGTGCCTC
40282444 GG
127 GG
* * * * *
40282446 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG-TGGTGCGGGACCATCGGGA
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGGAT-GTGCGGGAGCATC-GGA
* * * ** *
40282508 -ATCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCATTGGGAAGTATCGGCACCATGGTGCCT
62 CACCATCGGCACCTTGGTGCCTTGGATGTGCGGGACCA-TCGGAACCATCGGCACCTTGGTGCC-
40282572 TC-G
125 TCGG
* * * *
40282575 ATGTGCGGGTGCCTCGGACACCATCGGCACC----T---T-GGATGTGCAGGAGCCTCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
* *
40282632 GTCGGCACCTTGGTGCCTCGGATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC-CTG
66 ATCGGCACCTTGGTGCCTTGGATGTGCGGGA-CCATCGGA-ACCATCGGCACCTTGGTGCCTC-G
40282695 G
128 G
*
40282696 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGGTTGTGCGGGAGCATCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCATCGGACAC
* *
40282760 CATCGGCACCTTGGTGCCCTGGTTGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTCG
65 CATCGGCACCTTGGTGCCTTGGATGTGCGGGA-CCATCGGA-ACCATCGGCACCTTGGTGCCTCG
*
40282824 C
128 G
* *
40282825 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGCTGCCTCGGATGTGCGGGAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
*
40282890 ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGG
66 ATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGG
40282928 GCTAAAAATA
Statistics
Matches: 788, Mismatches: 130, Indels: 138
0.75 0.12 0.13
Matches are distributed among these distances:
117 7 0.01
118 56 0.07
119 16 0.02
120 14 0.02
121 93 0.12
122 3 0.00
124 1 0.00
125 1 0.00
126 1 0.00
127 8 0.01
128 26 0.03
129 533 0.68
130 28 0.04
131 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (128 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGGAACCATCGGCACCTTGGTGCCTCGG
Found at i:40282430 original size:75 final size:76
Alignment explanation
Indices: 40282306--40282538 Score: 236
Period size: 75 Copynumber: 2.9 Consensus size: 76
40282296 CATCGGACAC
* *
40282306 CATCGGTAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTTCG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
*
40282371 ATGTGCGGGAG
66 ATGTGCGAGAG
* ** * * *
40282382 CATCGGCAACTTAGGCCGATGGT-GTTTGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
40282446 ATGTGCGAGAG
66 ATGTGCGAGAG
* * * *
40282457 CATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAATCATCGGCACCTT
1 CATCGG-CA--A-C--T-A---AGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTC
40282522 GGTGCCT-CGGATGTGCG
56 GGTGCCTAC-GATGTGCG
40282539 GGACCATTGG
Statistics
Matches: 130, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
75 51 0.39
76 23 0.18
78 1 0.01
79 1 0.01
81 1 0.01
85 11 0.08
86 42 0.32
ACGTcount: A:0.18, C:0.25, G:0.36, T:0.20
Consensus pattern (76 bp):
CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
ATGTGCGAGAG
Found at i:40296100 original size:3 final size:3
Alignment explanation
Indices: 40296092--40296116 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
40296082 TCTAAGCAAA
40296092 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
40296117 AATTTGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:40296177 original size:3 final size:3
Alignment explanation
Indices: 40296171--40296199 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
40296161 ATAATAATAA
40296171 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
40296200 ACTTTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:40296475 original size:43 final size:43
Alignment explanation
Indices: 40296419--40297713 Score: 683
Period size: 43 Copynumber: 30.0 Consensus size: 43
40296409 AATCGGACAC
* * *
40296419 CATCGACAACTTGG-GCCGATGGATGTGCGGGACCATCGGGAGG
1 CATCGGCACCTTGGTGCC-ATGGATGTGCGGGACCATCGGGAAG
* * * * * *
40296462 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* ** *
40296505 CATCGGCAACTCAG-GCCGATGG-TGGTGCGGGACCGTCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
** * *
40296548 CATCGGCACCTTGGTGCC-TAGGATGTGCAAGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA-AG
** * *
40296591 CATCGGCTA-CTCAG-GCCGATGG-TGGTGCGCGACCATCGGGAAC
1 CATCGGC-ACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
40296634 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
* * * * * *
40296677 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* ** *
40296720 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGAACCATCGGGAAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGG-AAG
* * * *
40296764 CATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
** * *** *
40296807 CATCGATAACAAAG-GCCGATGG-TGGTGCGGGACCGTCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
** * *
40296850 CATCGGCACCTTGGTGCC-TAGGATGTGCAAGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA-AG
** * *
40296893 CATCGGCTA-CTCAG-GCCGATGG-TGGTGCGCGACCATCGGGAAC
1 CATCGGC-ACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
40296936 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
* * * * * *
40296979 TATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* **
40297022 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
*
40297065 CATCAGCACCTTGGTGCC-TCGGATGTGCGGGACCATC-GGAAG
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
* * * * * *
40297107 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* ** *
40297150 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGAACCATCGGGAAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGG-AAG
* * * *
40297194 CATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
** * ***
40297237 CATCGATAACAAAG-GCCGAT-G-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * * * *
40297279 TATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* **
40297322 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
40297365 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
* * * * * *
40297408 TATCGGCACCTTGGTGCCTTCGATGTGC-GGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* * ** *
40297450 CATCGGTAAC-T-CAGCCGATGG-TGGTGCGAGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
*
40297492 CATCGGACACCATCGGCAACTAAGGCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGG-CACC-TTGG----T---GCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * *
40297545 CATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* * * *
40297588 CATCGGCACCTAGGTGCC-TCGAATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA-AG
* *
40297631 CATCGGCAACTTTG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * * *
40297674 CATCGGGACCTAGGTGCCTTGCATGTGCGGGAGCAT-GGGA
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
40297714 CACCGTCGGG
Statistics
Matches: 946, Mismatches: 207, Indels: 199
0.70 0.15 0.15
Matches are distributed among these distances:
40 4 0.00
41 10 0.01
42 161 0.17
43 600 0.63
44 119 0.13
45 10 0.01
47 1 0.00
51 3 0.00
52 4 0.00
53 34 0.04
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGAAG
Found at i:40296857 original size:130 final size:129
Alignment explanation
Indices: 40296581--40296820 Score: 302
Period size: 130 Copynumber: 1.9 Consensus size: 129
40296571 TGTGCAAGAG
* * *
40296581 CATCGGACACCATCGGCTACTCAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
* ** * * *** * *
40296646 GGTGCCTCGGATGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAG
66 GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCCATCGATGTGCGGGAC
*
40296710 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCG-GAACCATCGGGAAAGCATCGGCACC
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCG-ACCATCGGG-AACCATCGGCACC
* * *
40296774 TTGGTGCCTCGGATGTGCGAGAGCATCGGGCACCATCGATAACAAAG
64 TTGGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAG
40296821 GCCGATGGTG
Statistics
Matches: 94, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
128 1 0.01
129 45 0.48
130 48 0.51
ACGTcount: A:0.22, C:0.28, G:0.33, T:0.17
Consensus pattern (129 bp):
CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCCATCGATGTGCGGGAC
Found at i:40297528 original size:180 final size:182
Alignment explanation
Indices: 40297306--40297679 Score: 598
Period size: 180 Copynumber: 2.1 Consensus size: 182
40297296 CTTCGATGTG
40297306 CGGG-AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
** *
40297370 GCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCG-AT
66 GCACCTTGGTGCCTTC-GATGTGCGGGACCATC-GGACACCATCGGCACCTAGGTGCC-TCGAAT
*
40297432 GTGC-GGAGCATCGAACACCATCGGTAAC-TCAGCCGATGGTGGTGCGAGACCAT
128 GTGCGGGAGCATCGAACACCATCGGCAACTTCAGCCGATGGTGGTGCGAGACCAT
40297485 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
*
40297550 GCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTG
66 GCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTG
* ** *
40297615 CGGGAGCATCGGACACCATCGGCAACTTTGGCCGATGGTGGTGCGGGACCAT
131 CGGGAGCATCGAACACCATCGGCAACTTCAGCCGATGGTGGTGCGAGACCAT
40297667 CGGGAAGCATCGG
1 CGGGAAGCATCGG
40297680 GACCTAGGTG
Statistics
Matches: 180, Mismatches: 9, Indels: 9
0.91 0.05 0.05
Matches are distributed among these distances:
179 10 0.06
180 111 0.62
181 24 0.13
182 35 0.19
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (182 bp):
CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
GCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTG
CGGGAGCATCGAACACCATCGGCAACTTCAGCCGATGGTGGTGCGAGACCAT
Found at i:40297536 original size:53 final size:52
Alignment explanation
Indices: 40297438--40297554 Score: 182
Period size: 53 Copynumber: 2.2 Consensus size: 52
40297428 CGATGTGCGG
* * *
40297438 AGCATCGAACACCATCGGTAACTCAGCCGATGGTGGTGCGAGACCATCGGGA
1 AGCATCGGACACCATCGGCAACTAAGCCGATGGTGGTGCGAGACCATCGGGA
*
40297490 AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGA
1 AGCATCGGACACCATCGGCAACTAA-GCCGATGGTGGTGCGAGACCATCGGGA
40297543 AGCATCGG-CACC
1 AGCATCGGACACC
40297555 TTGGTGCCTT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
52 26 0.43
53 34 0.57
ACGTcount: A:0.26, C:0.28, G:0.32, T:0.14
Consensus pattern (52 bp):
AGCATCGGACACCATCGGCAACTAAGCCGATGGTGGTGCGAGACCATCGGGA
Found at i:40298450 original size:43 final size:43
Alignment explanation
Indices: 40298356--40299470 Score: 800
Period size: 43 Copynumber: 26.4 Consensus size: 43
40298346 TGTTCCAGAC
* *
40298356 ATGTGCGAGAGCCTCGGACACCATCGGCACCTT-GTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
* *
40298398 ATGTGCGGGAGCCTCGGACACCATCGTCAACTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
* * *
40298441 ATGTGCGGGA-CCATCGGACACCACCGGCACCCTGGTGCCCTGG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTTGG
* ** * * *
40298484 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCCCTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
* * * * **
40298527 ATGTGC-GCAGCGCATCGGACGCCTTCGGCACCTTAGAT-CGATGG
1 ATGTGCGGGAGC-C-TCGGACACCATCGGCACCTT-GGTGCCTTGG
** *
40298571 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTTGG
** *
40298614 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTCG
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTTGG
* * * ** *
40298657 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
* *
40298699 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTTGG
* * * ** *
40298742 ATGTGCGAG-GCCATCGGGCACCATCGGCAACTAAG-GCCGATGG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC-TTGG
** * *
40298785 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTCG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTTGG
* * * ** *
40298828 ATGTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCCGATGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-TTGG
* * *
40298871 -TGGTGCGGGA-CCGTCGAGA-AGCATCGGCACCTCGGTGCCTTCG
1 AT-GTGCGGGAGCC-TCG-GACACCATCGGCACCTTGGTGCCTTGG
* * * * **
40298914 ATGTGCGGGAGCATCGG-CAACTTAGGC-CGATGGTG---T--
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
* *
40298950 -T-T--GGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTTGG
* * * * * *
40298989 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGATGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-TTGG
* *
40299032 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTTGG
* ** * *
40299075 ATGTGCGGGA-CCATTGGGA-AGTATCGGCACCATGGTGCCTTCG
1 ATGTGCGGGAGCC--TCGGACACCATCGGCACCTTGGTGCCTTGG
*
40299118 ATGTGCGGGTGCCTCGGACACCATCGGCA---------CTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
* * *
40299152 ATGTGCAGGAGCCTCGGACACCGTCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
*
40299195 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCCTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
* *
40299238 ATTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGG
1 A-TGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
* * *
40299282 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
* * *
40299325 TTGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
* *
40299368 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGCTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
*
40299411 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
*
40299454 ATGTGCGGGAGCATCGG
1 ATGTGCGGGAGCCTCGG
40299471 GCTAAAAATA
Statistics
Matches: 850, Mismatches: 153, Indels: 139
0.74 0.13 0.12
Matches are distributed among these distances:
31 1 0.00
32 6 0.01
33 8 0.01
34 37 0.04
35 1 0.00
38 1 0.00
40 1 0.00
41 8 0.01
42 100 0.12
43 584 0.69
44 99 0.12
45 4 0.00
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTTGG
Found at i:40299145 original size:247 final size:244
Alignment explanation
Indices: 40298573--40299427 Score: 743
Period size: 247 Copynumber: 3.4 Consensus size: 244
40298563 ATCGATGGTG
** **
40298573 GTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTGCCTCGGATGTGCGGGACCATCGGGAAGTA
1 GTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCTC-GATGTGCGGGACCATC-GGAACCA
*
40298637 TCGGCACCTTGGTGCCTTC-GATGTGCGAGAGCATCGGACACCATCGGCAACTCAGGCCGTGGTG
63 TCGGCACCTTGGTGCCTTCGGATGTGCG-GAG-A---G----CATCGGCAACTTAGGCCGTGGT-
*
40298701 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATGTGCGAG-GCCATCGGGCACCA
118 GTGCGGGACC-TCGGGAAGCATCGGCACCTTGGTGCCT-GGATGTGCGAGAG-CATCGGACACCA
* *
40298765 TCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT-ATCGGCACCATGGTGCCTTC-G
180 TCGGCAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAA-TCATCGGCACCTTGGTGCC-TCGG
40298828 AT
243 AT
* * * ** * * *
40298830 GTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCCGAT-GGTGGTGCGGGACCGTCGAGAAGC
1 GTGCGGGACCATCGGACACCATCGGCACCTTGGTGCC--TCGAT-GTGCGGGACCATCG-GAACC
* **
40298893 ATCGGCACCTCGGTGCCTTC-GATGTGCGG-GAGCATCGGCAACTTAGGCCGATGGTGTTTGGGA
62 ATCGGCACCTTGGTGCCTTCGGATGTGCGGAGAGCATCGGCAACTTAGGCCG-TGGTGTGCGGGA
*
40298956 CCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCGAGAGCATCGGACACCATCGGTAACT
126 CC-TCGGGAAGCATCGGCACCTTGGTGCCT-GGATGTGCGAGAGCATCGGACACCATCGGCAACT
40299021 TAGGCCGATGGTGGTGCGGGACCATCGGGAATCATCGGCACCTTGGTGCCTCGGAT
189 TAGGCCGATGGTGGTGCGGGACCATCGGGAATCATCGGCACCTTGGTGCCTCGGAT
* ** * *
40299077 GTGCGGGACCATTGGGA-AGTATCGGCACCATGGTGCCTTCGATGTGCGGGTGCC-TCGGACACC
1 GTGCGGGACCA-TCGGACACCATCGGCACCTTGGTGCC-TCGATGTGCGGG-ACCATCGGA-ACC
* * * * * *
40299140 ATCGGCA-CTTGGATG--TGCAGGA-GCCT-CGGACACCGTCGGCACCTTGGTGCC-TCGGATGT
62 ATCGGCACCTTGG-TGCCTTC-GGATG--TGCGGAGAGCATCGGCAACTTAG-GCCGT-GG-TGT
* *
40299199 GCGGGAGCCTC-GGACACCATCGGCACCTTGGTGCCCTGGATTGTGCGGGAGCATCGGACACCAT
120 GCGGGA-CCTCGGGA-AGCATCGGCACCTTGGTG-CCTGGA-TGTGCGAGAGCATCGGACACCAT
* * * * * *
40299263 CGGCACCTTGGTGCC-CTGGTTGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCC-CTGG
181 CGGCAACTTAG-GCCGATGGTGGTGCGGGACCATCGGGA-ATCATCGGCACCTTGGTGCCTC-GG
*
40299325 TT
243 AT
40299327 GTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTCGCATGTGCGGGAGCC-TCGGACACC
1 GTGCGGGA-CCATCGGACACCATCGGCACCTTGGTGCCTCG-ATGTGCGGGA-CCATCGGA-ACC
*
40299390 ATCGGCACCTTGCTGCC-TCGGATGTGCGG-GAGCATCGG
62 ATCGGCACCTTGGTGCCTTCGGATGTGCGGAGAGCATCGG
40299428 ACACCATCGG
Statistics
Matches: 497, Mismatches: 62, Indels: 86
0.77 0.10 0.13
Matches are distributed among these distances:
245 2 0.00
246 10 0.02
247 178 0.36
248 34 0.07
249 50 0.10
250 133 0.27
251 12 0.02
254 1 0.00
255 1 0.00
256 10 0.02
257 65 0.13
258 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.36, T:0.19
Consensus pattern (244 bp):
GTGCGGGACCATCGGACACCATCGGCACCTTGGTGCCTCGATGTGCGGGACCATCGGAACCATCG
GCACCTTGGTGCCTTCGGATGTGCGGAGAGCATCGGCAACTTAGGCCGTGGTGTGCGGGACCTCG
GGAAGCATCGGCACCTTGGTGCCTGGATGTGCGAGAGCATCGGACACCATCGGCAACTTAGGCCG
ATGGTGGTGCGGGACCATCGGGAATCATCGGCACCTTGGTGCCTCGGAT
Found at i:40310498 original size:3 final size:3
Alignment explanation
Indices: 40310490--40310514 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
40310480 TCTAAGCAAA
40310490 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
40310515 AATTTGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:40310575 original size:3 final size:3
Alignment explanation
Indices: 40310569--40310597 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
40310559 ATAATAATAA
40310569 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
40310598 ACTTTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:40311060 original size:129 final size:130
Alignment explanation
Indices: 40310927--40311201 Score: 419
Period size: 129 Copynumber: 2.1 Consensus size: 130
40310917 GCCGATGGTG
* * *
40310927 GTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
* *
40310992 CGGCTACTCAGGCCGATGGTGGTGCGCG-ACCATCGGG-AACCATCGGCACCTTGGTGCCTCGGA
66 CGGCAACTAAGGCCGATGGTGGTGCG-GAACCATCGGGAAACCATCGGCACCTTGGTGCCTCGGA
40311055 T
130 T
* * **
40311056 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
*
40311121 CGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAACCATCGGCACCTTGGTGCCTCGGAT
* *
40311186 GTGCGAGAGCATCGGG
1 GTGCGGGACCATCGGG
40311202 CACCATCGAT
Statistics
Matches: 132, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
128 1 0.01
129 91 0.69
130 40 0.30
ACGTcount: A:0.20, C:0.27, G:0.36, T:0.18
Consensus pattern (130 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAACCATCGGCACCTTGGTGCCTCGGAT
Found at i:40311081 original size:86 final size:86
Alignment explanation
Indices: 40310808--40311070 Score: 368
Period size: 86 Copynumber: 3.1 Consensus size: 86
40310798 ATCGGACACA
* ** * *
40310808 ATCGGACACCATCGACAACTTGGGCCGATGGAT-GTGCGGGACCATCGGGAGGTATCGGCACCTT
1 ATCGGACACCATCGGCAACTCAGGCCGATGG-TGGTGCGGGACCATCGGGAAGCATCGGCACCTT
40310872 GGTGCCTTC-GATGTGCGGGAGC
65 GGTGCC-TCGGATGTGCGGGAGC
* *
40310894 ATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTG
1 ATCGGACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTG
* **
40310959 GTGCCTAGGATGTGCAAGAGC
66 GTGCCTCGGATGTGCGGGAGC
* * *
40310980 ATCGGACACCATCGGCTACTCAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTG
1 ATCGGACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTG
*
40311045 GTGCCTCGGATGTGCGGGACC
66 GTGCCTCGGATGTGCGGGAGC
40311066 ATCGG
1 ATCGG
40311071 GAAGTATCGG
Statistics
Matches: 156, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
85 2 0.01
86 154 0.99
ACGTcount: A:0.19, C:0.28, G:0.35, T:0.18
Consensus pattern (86 bp):
ATCGGACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTG
GTGCCTCGGATGTGCGGGAGC
Found at i:40311103 original size:86 final size:86
Alignment explanation
Indices: 40311013--40312093 Score: 747
Period size: 86 Copynumber: 12.4 Consensus size: 86
40311003 GCCGATGGTG
* * * *
40311013 GTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCC-TCGGAT-GTGCGGGACCATCGGGAAGT
1 GTGCGGGAGCATCGGGAACCATCGGCACCTAGGTGCCAT-GG-TGGTGCGGGACCATCGGGAAGC
40311076 ATCGGCACCTTGGTGCCTTCGAT
64 ATCGGCACCTTGGTGCCTTCGAT
* * * *
40311099 GTGCGGGAGCATC-GAACACCATCGGCAACTAAG-GCCGATGGTGGTGCGGAACCATCGGGAAAG
1 GTGCGGGAGCATCGGGA-ACCATCGGCACCTAGGTGCC-ATGGTGGTGCGGGACCATCGGG-AAG
40311162 CATCGGCACCTTGGTGCC-TCGGAT
63 CATCGGCACCTTGGTGCCTTC-GAT
* * ** * * * *
40311186 GTGCGAGAGCATCGGGCACCATCGATAACAAAG-GCCGATGGTGGTGCGGGACCGTCGGGAAGCA
1 GTGCGGGAGCATCGGGAACCATCGGCACCTAGGTGCC-ATGGTGGTGCGGGACCATCGGGAAGCA
**
40311250 TCGGCACCTTGGTGCCTAGGAT
65 TCGGCACCTTGGTGCCTTCGAT
** *
40311272 GTGCAAGAGCATC-GGACACCATCGGCTA-CTCA-G-GCCGATGGTGGTGCGCGACCATCGGGAA
1 GTGCGGGAGCATCGGGA-ACCATCGGC-ACCT-AGGTGCC-ATGGTGGTGCGGGACCATCGGGAA
*
40311333 CCATCGGCACCTTGGTGCC-TCGGAT
62 GCATCGGCACCTTGGTGCCTTC-GAT
* ** * * * *
40311358 GTGCGGGACCATCGGGAAGTATCGGCACCCT-GGTGCCTTCGAT-GTGCGGGAGCATC-GGACAC
1 GTGCGGGAGCATCGGGAACCATCGGCA-CCTAGGTGCCAT-GGTGGTGCGGGACCATCGGGA-AG
* ** * *
40311420 CATCGGCAACTAAG-GCCGAT-GGT
63 CATCGGCACCTTGGTGCC-TTCGAT
* * * *
40311443 GGTGCGGGACCATCGGGAAGCATCAGCACCTTGGTGCC-TCGGAT-GTGCGGGACCATCGGGAAG
1 -GTGCGGGAGCATCGGGAACCATCGGCACCTAGGTGCCAT-GG-TGGTGCGGGACCATCGGGAAG
*
40311506 TATCGGCACCTTGGTGCCTTCGAT
63 CATCGGCACCTTGGTGCCTTCGAT
* * * *
40311530 GTGCGGGAGCATC-GAACACCATCGGCAACTAAG-GCCGATGGTGGTGCGGAACCATCGGGAAAG
1 GTGCGGGAGCATCGGGA-ACCATCGGCACCTAGGTGCC-ATGGTGGTGCGGGACCATCGGG-AAG
40311593 CATCGGCACCTTGGTGCC-TCGGAT
63 CATCGGCACCTTGGTGCCTTC-GAT
* * ** * * * *
40311617 GTGCGAGAGCATCGGGCACCATCGATAACAAAG-GCCGATGGTGGTGCGGGACCATCGGGAAGTA
1 GTGCGGGAGCATCGGGAACCATCGGCACCTAGGTGCC-ATGGTGGTGCGGGACCATCGGGAAGCA
*
40311681 TCGGCACCCTGGTGCCTTCGAT
65 TCGGCACCTTGGTGCCTTCGAT
* *
40311703 GTGCGGGAGCATC-GGACACCATCGGCAACTAAG-GCCGATGGTGGTGCGGGACCATCGGGAAGC
1 GTGCGGGAGCATCGGGA-ACCATCGGCACCTAGGTGCC-ATGGTGGTGCGGGACCATCGGGAAGC
40311766 ATCGGCACCTTGGTGCC-TCGGAT
64 ATCGGCACCTTGGTGCCTTC-GAT
* ** * * * * * *
40311789 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGAT-GTGCGGGAGCATC-GAACACC
1 GTGCGGGAGCATCGGGAACCATCGGCACCTAGGTGCCAT-GGTGGTGCGGGACCATCGGGA-AGC
* * ** * *
40311852 ATCGGTAACTCAG-GCCGAT-GGT
64 ATCGGCACCTTGGTGCC-TTCGAT
* * * *
40311874 GGTGCGAGACCATCGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCA
1 -GTGCGGGAGCATCGGGAACCATCGG-CACC-TAGG----T---GCC-ATGGTGGTGCGGGACCA
40311939 TCGGGAAGCATCGGCACCTTGGTGCCTTCGAT
55 TCGGGAAGCATCGGCACCTTGGTGCCTTCGAT
* *
40311971 GTGCGGGAGCATC-GGACACCATCGGCACCTAGGTGCC-TCGAAT-GTGCGGGAGCATC-GGACA
1 GTGCGGGAGCATCGGGA-ACCATCGGCACCTAGGTGCCAT-G-GTGGTGCGGGACCATCGGGA-A
* * * * *
40312032 CCATCGGCAACTTTG-GCCGAT-GGT
62 GCATCGGCACCTTGGTGCC-TTCGAT
* * *
40312056 GGTGCGGGACCATCGGGAAGCATCGGGACCTAGGTGCC
1 -GTGCGGGAGCATCGGGAACCATCGGCACCTAGGTGCC
40312094 TTGCATGTGC
Statistics
Matches: 809, Mismatches: 121, Indels: 130
0.76 0.11 0.12
Matches are distributed among these distances:
85 49 0.06
86 498 0.62
87 190 0.23
88 5 0.01
90 1 0.00
92 1 0.00
94 3 0.00
95 12 0.01
96 43 0.05
97 7 0.01
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (86 bp):
GTGCGGGAGCATCGGGAACCATCGGCACCTAGGTGCCATGGTGGTGCGGGACCATCGGGAAGCAT
CGGCACCTTGGTGCCTTCGAT
Found at i:40311255 original size:130 final size:129
Alignment explanation
Indices: 40310979--40311218 Score: 302
Period size: 130 Copynumber: 1.9 Consensus size: 129
40310969 TGTGCAAGAG
* * *
40310979 CATCGGACACCATCGGCTACTCAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
* ** * * *** * *
40311044 GGTGCCTCGGATGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAG
66 GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCCATCGATGTGCGGGAC
*
40311108 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCG-GAACCATCGGGAAAGCATCGGCACC
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCG-ACCATCGGG-AACCATCGGCACC
* * *
40311172 TTGGTGCCTCGGATGTGCGAGAGCATCGGGCACCATCGATAACAAAG
64 TTGGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAG
40311219 GCCGATGGTG
Statistics
Matches: 94, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
128 1 0.01
129 45 0.48
130 48 0.51
ACGTcount: A:0.22, C:0.28, G:0.33, T:0.17
Consensus pattern (129 bp):
CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCCATCGATGTGCGGGAC
Found at i:40311336 original size:129 final size:128
Alignment explanation
Indices: 40311229--40311632 Score: 612
Period size: 129 Copynumber: 3.1 Consensus size: 128
40311219 GCCGATGGTG
* * ** **
40311229 GTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* * *
40311294 CGGCTACTCAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCG-GACCATCGGGAACCATCGACACCTTGGTGCCTCGGAT
*
40311358 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
*
40311423 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATC-AGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGC-GGACCATCGGGAACCATCGA-CACCTTGGTGCCTCGGAT
*
40311487 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
40311552 CGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCGG-ACCATCGGG-AACCATCGACACCTTGGTGCCTCGGAT
* *
40311617 GTGCGAGAGCATCGGG
1 GTGCGGGACCATCGGG
40311633 CACCATCGAT
Statistics
Matches: 254, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
128 2 0.01
129 212 0.83
130 40 0.16
ACGTcount: A:0.20, C:0.27, G:0.36, T:0.18
Consensus pattern (128 bp):
GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGGACCATCGGGAACCATCGACACCTTGGTGCCTCGGAT
Found at i:40311640 original size:431 final size:431
Alignment explanation
Indices: 40310927--40311997 Score: 1759
Period size: 431 Copynumber: 2.5 Consensus size: 431
40310917 GCCGATGGTG
* * ** **
40310927 GTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* * *
40310992 CGGCTACTCAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATG
66 CGGCAACTCAGGCCGATGGTGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
40311057 TGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATC
131 TGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATC
40311122 GGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGATG
196 GGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGATG
*
40311187 TGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATC
261 TGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATC
* * * *
40311252 GGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCATCGGCTACTCAGGCCGATGGTGGT
326 GGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGT
40311317 GCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGAT
391 GCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGAT
*
40311358 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* * *
40311423 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCAGCACCTTGGTGCCTCGGATG
66 CGGCAACTCAGGCCGATGGTGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
40311488 TGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATC
131 TGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATC
40311553 GGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGATG
196 GGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGATG
*
40311618 TGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTATC
261 TGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATC
* **
40311683 GGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGT
326 GGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGT
* *
40311748 GCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGAT
391 GCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGAT
*
40311789 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
40311854 CGGTAACTCAGGCCGATGGTGGTGCGAGACCATCGGGAAGCATCGGACACCATCGGCAACTAAGG
66 CGGCAACTCAGGCCGATGGTGGTGCGAGACCATCGGGAAGCATCGG-CACC-TTGG----T---G
*
40311919 CCGAT-GG-TGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCA
122 CC--TCGGAT-GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCA
*
40311982 TCGGACACCATCGGCA
184 TCGAACACCATCGGCA
40311998 CCTAGGTGCC
Statistics
Matches: 596, Mismatches: 32, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
431 513 0.86
432 4 0.01
433 3 0.01
437 1 0.00
440 4 0.01
441 70 0.12
442 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (431 bp):
GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTCAGGCCGATGGTGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATC
GGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATC
GGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGT
GCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGAT
Found at i:40311795 original size:129 final size:129
Alignment explanation
Indices: 40311654--40312124 Score: 537
Period size: 129 Copynumber: 3.6 Consensus size: 129
40311644 ACAAAGGCCG
*
40311654 ATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGA
1 ATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGA
40311719 CACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC
66 CACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC
* *
40311783 -TCGGAT-GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCG
1 AT-GG-TGGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCG
* * * * *
40311846 AACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCATCGGGAAGCATCGGACACCATCGGC
64 GACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGG-CACC-TTGG-
40311911 AACTAAGGCC
126 ---T---GCC
*
40311921 GATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGG
1 -ATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGG
* * * * * * *
40311986 ACACCATCGGCACCTAGGTGCC--TCGAAT-GTGCGGGAGCATC-GGACACCATCGGCAACTTTG
65 ACACCATCGGCAACTAAG-GCCGAT-G-GTGGTGCGGGACCATCGGGA-AGCATCGGCACCTTGG
40312047 -GCC
126 TGCC
* *
40312050 GATGGTGGTGCGGGACCATCGGGAAGCATCGGGA-CCTAGGTGCCTT-GCATGTGCGGGAGCATG
1 -ATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCCT-GGTGCCTTCG-ATGTGCGGGAGCATC
*
40312113 GGACACCGTCGG
63 GGACACCATCGG
40312125 GCCAAAAAAA
Statistics
Matches: 299, Mismatches: 23, Indels: 40
0.83 0.06 0.11
Matches are distributed among these distances:
128 4 0.01
129 177 0.59
130 5 0.02
131 3 0.01
135 1 0.00
137 2 0.01
138 11 0.04
139 91 0.30
140 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.36, T:0.18
Consensus pattern (129 bp):
ATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGA
CACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC
Found at i:40311952 original size:53 final size:53
Alignment explanation
Indices: 40311835--40311956 Score: 194
Period size: 53 Copynumber: 2.3 Consensus size: 53
40311825 CTTCGATGTG
* * *
40311835 CGGG-AGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
*
40311887 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
40311940 CGGGAAGCATCGG-CACC
1 CGGGAAGCATCGGACACC
40311957 TTGGTGCCTT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
52 8 0.12
53 57 0.88
ACGTcount: A:0.25, C:0.28, G:0.34, T:0.13
Consensus pattern (53 bp):
CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
Found at i:40311974 original size:182 final size:182
Alignment explanation
Indices: 40311706--40312081 Score: 616
Period size: 182 Copynumber: 2.1 Consensus size: 182
40311696 CTTCGATGTG
40311706 CGGG-AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
** *
40311770 GCACCTTGGTGCCTCGGATGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCG-ATG
66 GCACCTTGGTGCCTCGGATGTGCGGGACCATC-GGACACCATCGGCACCTAGGTGCC-TCGAATG
*
40311833 TGCGGGAGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCAT
129 TGCGGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
40311887 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
*
40311952 GCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGAATGT
66 GCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGACACCATCGGCACCTAGGTGCCTCGAATGT
* ** *
40312016 GCGGGAGCATCGGACACCATCGGCAACTTTGGCCGATGGTGGTGCGGGACCAT
130 GCGGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
40312069 CGGGAAGCATCGG
1 CGGGAAGCATCGG
40312082 GACCTAGGTG
Statistics
Matches: 182, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
181 10 0.05
182 170 0.93
183 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.36, T:0.17
Consensus pattern (182 bp):
CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
GCACCTTGGTGCCTCGGATGTGCGGGACCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTG
CGGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
Found at i:40312125 original size:43 final size:43
Alignment explanation
Indices: 40311887--40312124 Score: 184
Period size: 43 Copynumber: 5.5 Consensus size: 43
40311877 GCGAGACCAT
* * * *
40311887 CGGGAAGCATCGGACACCATCGGCAACTAAG-GCCGATG-GTGGTG
1 CGGG-AGCATCGGACACCATCGGCACCTAGGTGCC-TTGCAT-GTG
* * *
40311931 CGGGACCATCGGGA-AGCATCGGCACCTTGGTGCCTT-CGATGTG
1 CGGGAGCATC-GGACACCATCGGCACCTAGGTGCCTTGC-ATGTG
* *
40311974 CGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGAATGTG
1 CGGGAGCATCGGACACCATCGGCACCTAGGTGCCTTGCATGTG
* ** * *
40312017 CGGGAGCATCGGACACCATCGGCAACTTTG-GCCGATG-GTGGTG
1 CGGGAGCATCGGACACCATCGGCACCTAGGTGCC-TTGCAT-GTG
* * *
40312060 CGGGACCATCGGGA-AGCATCGGGACCTAGGTGCCTTGCATGTG
1 CGGGAGCATC-GGACACCATCGGCACCTAGGTGCCTTGCATGTG
* *
40312103 CGGGAGCATGGGACACCGTCGG
1 CGGGAGCATCGGACACCATCGG
40312125 GCCAAAAAAA
Statistics
Matches: 152, Mismatches: 30, Indels: 25
0.73 0.14 0.12
Matches are distributed among these distances:
42 10 0.07
43 124 0.82
44 18 0.12
ACGTcount: A:0.20, C:0.27, G:0.37, T:0.17
Consensus pattern (43 bp):
CGGGAGCATCGGACACCATCGGCACCTAGGTGCCTTGCATGTG
Found at i:40312822 original size:43 final size:43
Alignment explanation
Indices: 40312761--40313876 Score: 770
Period size: 43 Copynumber: 26.4 Consensus size: 43
40312751 TGTTCCAGAC
*
40312761 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
40312804 ATGTGCGGGAGCCTCGGACACCATCGTCAACTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40312847 ATGTGCGGGA-CCATCGGACACCACCGGCACCCTGGTGCC-CTGG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTC-GG
* ** * *
40312890 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * * * * *
40312933 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGAT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
** *
40312976 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCGTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
40313019 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
40313062 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
40313105 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * **
40313148 ATGTGCGAG-GCCATCGGGCACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
40313191 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
40313234 ATGTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
40313277 -TGGTGCGGGA-CCGTCGAGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TCG-GACACCATCGGCACCTTGGTGCC-TCGG
* * * * **
40313320 ATGTGCGGGAGCATCGG-CAACTTAGGC-CGATGGTG--T---
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40313356 -T-T--GGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
40313395 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
40313438 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* ** *
40313481 ATGTGCGGGA-CCATTGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC--TCGGACACCATCGGCACCTTGGTGCC-TCGG
*
40313524 ATGTGCGGGTGCCTCGGACACCATCGGCACC----T---T-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40313559 ATGTGCAGGAGCCTCGGACACCGTCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
40313602 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
*
40313645 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
40313688 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
40313731 TTGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
40313774 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGCTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
40313817 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
40313860 ATGTGCGGGAGCATCGG
1 ATGTGCGGGAGCCTCGG
40313877 GCTAAAAATA
Statistics
Matches: 862, Mismatches: 128, Indels: 166
0.75 0.11 0.14
Matches are distributed among these distances:
31 1 0.00
32 6 0.01
33 8 0.01
34 7 0.01
35 31 0.04
36 1 0.00
38 1 0.00
39 2 0.00
40 1 0.00
41 6 0.01
42 52 0.06
43 699 0.81
44 47 0.05
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:40312907 original size:86 final size:86
Alignment explanation
Indices: 40312761--40313876 Score: 868
Period size: 86 Copynumber: 13.2 Consensus size: 86
40312751 TGTTCCAGAC
* *
40312761 ATGTGCGAGAGCC-TCGGACACCATCGGCACCTTGGTG-CCTCGGATGTGCGGGAGCCTCGGACA
1 ATGTGCGGGA-CCATCGGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCATCGGACA
* *
40312824 CCATCGTCAACTTGGTGCCTTGG
64 CCATCGGCACCTTGGTGCCTTGG
* * * **
40312847 ATGTGCGGGACCATCGGACACCACCGGCACCCTGGTGCCCTGGTTGTGCGACAGCATCGGACACC
1 ATGTGCGGGACCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACACC
* *
40312912 ATCGGTACCTTGGTGCCCTGG
66 ATCGGCACCTTGGTGCCTTGG
* * * * * ** *
40312933 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGAT-CGATGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGACCATCGGACACCATCGGCACCTT-GGTGCCCTGGAT-GTGCGGGAGCATC-GGAC
** * *
40312995 ATAATCGGCACCTTGGTGCGTCGG
63 ACCATCGGCACCTTGGTGCCTTGG
** * * *
40313019 ATGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACAC
1 ATGTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACAC
* ** *
40313083 CATCGGCAACTCAG-GCCGGTGG
65 CATCGGCACCTTGGTGCC-TTGG
* * *
40313105 -TGGTGCGGGACCATCGGGA-AGCATCGGCACCTTGGTG-CCTCGGATGTGCGAGG-CCATCGGG
1 AT-GTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCCT-GGATGTGCG-GGAGCATCGGA
* ** *
40313166 CACCATCGGCAACTAAG-GCCGATGG
62 CACCATCGGCACCTTGGTGCC-TTGG
** * * *
40313191 -TGGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACA
1 AT-GTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACA
* * ** *
40313254 CCATCGGTAACTAAG-GCCGATGG
64 CCATCGGCACCTTGGTGCC-TTGG
* * * * *
40313277 -TGGTGCGGGACCGTCGAGA-AGCATCGGCACCTCGGTGCCTTCGATGTGCGGGAGCATCGG-CA
1 AT-GTGCGGGACCATCG-GACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACA
* * * **
40313339 ACTTAGGC-CGATGGTG---T--
64 CCATCGGCACCTTGGTGCCTTGG
* * *
40313356 -T-T--GGGACCGTCGGGA-AGCATCGGCACCTTGGTG-CCTAGGATGTGCGAGAGCATCGGACA
1 ATGTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCATCGGACA
* * * *
40313415 CCATCGGTAACTTAG-GCCGATGG
64 CCATCGGCACCTTGGTGCC-TTGG
* * *
40313438 -TGGTGCGGGACCATCGGGA-ATCATCGGCACCTTGGTG-CCTCGGATGTGCGGGACCATTGGGA
1 AT-GTGCGGGACCATC-GGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCA-TCGGA
** * *
40313500 -AGTATCGGCACCATGGTGCCTTCG
62 CACCATCGGCACCTTGGTGCCTTGG
* * *
40313524 ATGTGCGGGTGCC-TCGGACACCATCGGCACC----T----TGGATGTGCAGGAGCCTCGGACAC
1 ATGTGCGGG-ACCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACAC
* *
40313580 CGTCGGCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCTTGG
40313602 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACAC
1 ATGTGCGGGA-CCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACAC
*
40313666 CATCGGCACCTTGGTGCCCTGG
65 CATCGGCACCTTGGTGCCTTGG
* * * *
40313688 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGTTGTGCGGGAGCCTCGGACACC
1 ATGTGCGGGACCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACACC
* *
40313753 ATCGGCACCTTGGTGCCTCGC
66 ATCGGCACCTTGGTGCCTTGG
*
40313774 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGCTG-CCTCGGATGTGCGGGAGCATCGGACA
1 ATGTGCGGGA-CCATCGGACACCATCGGCACCTTGGTGCCCT-GGATGTGCGGGAGCATCGGACA
40313837 CCATCGGCACCTTGGTGCCTTGG
64 CCATCGGCACCTTGGTGCCTTGG
*
40313860 ATGTGCGGGAGCATCGG
1 ATGTGCGGGACCATCGG
40313877 GCTAAAAATA
Statistics
Matches: 844, Mismatches: 136, Indels: 100
0.78 0.13 0.09
Matches are distributed among these distances:
74 2 0.00
75 45 0.05
76 8 0.01
77 7 0.01
78 59 0.07
79 2 0.00
80 1 0.00
81 1 0.00
82 3 0.00
84 2 0.00
85 31 0.04
86 657 0.78
87 26 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (86 bp):
ATGTGCGGGACCATCGGACACCATCGGCACCTTGGTGCCCTGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTTGG
Found at i:40312925 original size:129 final size:128
Alignment explanation
Indices: 40312761--40313876 Score: 875
Period size: 129 Copynumber: 8.8 Consensus size: 128
40312751 TGTTCCAGAC
* * *
40312761 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
* * * *
40312826 ATCGTCAACTTGGTGCCTTGGATGTGCGGGACCATCGGACACCACCGGCACCCTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGGA-ACCATCGGCACCTTGGTGCCTC-GG
* ** * * *
40312890 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGGATGTGCGGCAGCATCGGACGC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCATCGGACAC
* * ** ** *
40312954 CTTCGGCACCTTAGAT-CGATGG-TGGTGCGGGACCATCGGGAATAATCGGCACCTTGGTGCGTC
65 CATCGGCACCTT-GGTGCCTTGGAT-GTGCGGGACCATC-GGAACCATCGGCACCTTGGTGCCTC
40313017 GG
127 GG
* ** *
40313019 ATGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-GATGTGCGAGAGCATCGGACA
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCATCGGACA
* ** * *
40313082 CCATCGGCAACTCAG-GCCGGTGG-TGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCT
64 CCATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGACCATC-GGAACCATCGGCACCTTGGTGCCT
40313145 CGG
126 CGG
* * * ** *
40313148 ATGTGCGAGG-CCATCGGGCACCATCGGCAACTAAG-GCCGAT-GG-TGGTGCGGGACCATCGGG
1 ATGTGCG-GGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGGAT-GTGCGGGAGCATC-GG
** * * * * * **
40313209 A-AGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCC
61 ACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGGA-ACCATCGGCACCTTGGTGCC
40313272 GAT-GG
125 --TCGG
* * * *
40313277 -TGGTGCGGGACCGTCGAGA-AGCATCGGCACCTCGGTGCCTTC-GATGTGCGGGAGCATCGG-C
1 AT-GTGCGGGAGCATCG-GACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCATCGGAC
* * * ** * * *
40313338 AACTTAGGC-CGATGGTG---T---T-T--GGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTA
63 ACCATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATC-GGAACCATCGGCACCTTGGTGCCTC
40313393 GG
127 GG
* * * * *
40313395 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG-TGGTGCGGGACCATCGGGA
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGGAT-GTGCGGGAGCATC-GGA
* * * ** *
40313457 -ATCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCATTGGGAAGTATCGGCACCATGGTGCCT
62 CACCATCGGCACCTTGGTGCCTTGGATGTGCGGGACCA-TCGGAACCATCGGCACCTTGGTGCC-
40313521 TC-G
125 TCGG
* * * *
40313524 ATGTGCGGGTGCCTCGGACACCATCGGCACC----T---T-GGATGTGCAGGAGCCTCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
* *
40313581 GTCGGCACCTTGGTGCCTCGGATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC-CTG
66 ATCGGCACCTTGGTGCCTTGGATGTGCGGGA-CCATCGGA-ACCATCGGCACCTTGGTGCCTC-G
40313644 G
128 G
*
40313645 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGGTTGTGCGGGAGCATCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCATCGGACAC
* *
40313709 CATCGGCACCTTGGTGCCCTGGTTGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTCG
65 CATCGGCACCTTGGTGCCTTGGATGTGCGGGA-CCATCGGA-ACCATCGGCACCTTGGTGCCTCG
*
40313773 C
128 G
* *
40313774 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGCTGCCTCGGATGTGCGGGAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
*
40313839 ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGG
66 ATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGG
40313877 GCTAAAAATA
Statistics
Matches: 786, Mismatches: 132, Indels: 138
0.74 0.12 0.13
Matches are distributed among these distances:
117 7 0.01
118 56 0.07
119 16 0.02
120 14 0.02
121 93 0.12
122 3 0.00
124 1 0.00
125 1 0.00
126 1 0.00
127 8 0.01
128 26 0.03
129 531 0.68
130 28 0.04
131 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (128 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTTGGATGTGCGGGACCATCGGAACCATCGGCACCTTGGTGCCTCGG
Found at i:40313379 original size:75 final size:76
Alignment explanation
Indices: 40313255--40313487 Score: 236
Period size: 75 Copynumber: 2.9 Consensus size: 76
40313245 CATCGGACAC
* *
40313255 CATCGGTAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTTCG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
*
40313320 ATGTGCGGGAG
66 ATGTGCGAGAG
* ** * * *
40313331 CATCGGCAACTTAGGCCGATGGT-GTTTGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
40313395 ATGTGCGAGAG
66 ATGTGCGAGAG
* * * *
40313406 CATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAATCATCGGCACCTT
1 CATCGG-CA--A-C--T-A---AGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTC
40313471 GGTGCCT-CGGATGTGCG
56 GGTGCCTAC-GATGTGCG
40313488 GGACCATTGG
Statistics
Matches: 130, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
75 51 0.39
76 23 0.18
78 1 0.01
79 1 0.01
81 1 0.01
85 11 0.08
86 42 0.32
ACGTcount: A:0.18, C:0.25, G:0.36, T:0.20
Consensus pattern (76 bp):
CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
ATGTGCGAGAG
Found at i:40321389 original size:3 final size:3
Alignment explanation
Indices: 40321381--40321405 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
40321371 TCTAAGCAAA
40321381 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
40321406 AATTTGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:40321466 original size:3 final size:3
Alignment explanation
Indices: 40321460--40321488 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
40321450 ATAATAATAA
40321460 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
40321489 ACTTTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:40321951 original size:129 final size:130
Alignment explanation
Indices: 40321818--40322092 Score: 419
Period size: 129 Copynumber: 2.1 Consensus size: 130
40321808 GCCGATGGTG
* * *
40321818 GTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
* *
40321883 CGGCTACTCAGGCCGATGGTGGTGCGCG-ACCATCGGG-AACCATCGGCACCTTGGTGCCTCGGA
66 CGGCAACTAAGGCCGATGGTGGTGCG-GAACCATCGGGAAACCATCGGCACCTTGGTGCCTCGGA
40321946 T
130 T
* * **
40321947 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
*
40322012 CGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAACCATCGGCACCTTGGTGCCTCGGAT
* *
40322077 GTGCGAGAGCATCGGG
1 GTGCGGGACCATCGGG
40322093 CACCATCGAT
Statistics
Matches: 132, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
128 1 0.01
129 91 0.69
130 40 0.30
ACGTcount: A:0.20, C:0.27, G:0.36, T:0.18
Consensus pattern (130 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAACCATCGGCACCTTGGTGCCTCGGAT
Done.