Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 152 of 171
Found at i:45679338 original size:27 final size:27
Alignment explanation
Indices: 45679308--45679369 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
45679298 TATAAAATGC
*
45679308 AAAAAATTAAAATTTAT-TAACA-TAGTA
1 AAAAAATTAAAAATTATATAA-ATTA-TA
*
45679335 AAAAAAATAAAAATTATATAAATTATA
1 AAAAAATTAAAAATTATATAAATTATA
45679362 AAAAAATT
1 AAAAAATT
45679370 GTAAAATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 25 0.83
28 5 0.17
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (27 bp):
AAAAAATTAAAAATTATATAAATTATA
Found at i:45679411 original size:46 final size:48
Alignment explanation
Indices: 45679361--45679464 Score: 112
Period size: 46 Copynumber: 2.3 Consensus size: 48
45679351 TATAAATTAT
* * *
45679361 AAAAAAATTGTAAAATATTTG-GAAAAGT-TAAAATATAGAAAATAAC
1 AAAAAAATTATAAAAAATTTGAAAAAAGTATAAAATATAGAAAATAAC
* *
45679407 --AAAAA-TATAAAAAATTTGAAAAAAATTATAAAATATAGAAAATTAC
1 AAAAAAATTATAAAAAATTTG-AAAAAAGTATAAAATATAGAAAATAAC
45679453 AAAAAAA-TATAA
1 AAAAAAATTATAA
45679465 TTACAAAGTA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
43 11 0.23
44 5 0.10
45 5 0.10
46 17 0.35
48 10 0.21
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.25
Consensus pattern (48 bp):
AAAAAAATTATAAAAAATTTGAAAAAAGTATAAAATATAGAAAATAAC
Found at i:45679440 original size:28 final size:27
Alignment explanation
Indices: 45679408--45679464 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 27
45679398 GAAAATAACA
**
45679408 AAAATATAAAAAATTTGAAAAAAATTAT
1 AAAATATAAAAAATTACAAAAAAA-TAT
*
45679436 AAAATATAGAAAATTACAAAAAAATAT
1 AAAATATAAAAAATTACAAAAAAATAT
45679463 AA
1 AA
45679465 TTACAAAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (27 bp):
AAAATATAAAAAATTACAAAAAAATAT
Found at i:45679502 original size:22 final size:22
Alignment explanation
Indices: 45679445--45679502 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
45679435 TAAAATATAG
45679445 AAAATTACAAAAAAATATAATT
1 AAAATTACAAAAAAATATAATT
* **
45679467 ACAAAGTATTAAAAAAT-TAATAT
1 A-AAATTACAAAAAAATATAAT-T
45679490 AAAATTACAAAAA
1 AAAATTACAAAAA
45679503 TAAGAATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (22 bp):
AAAATTACAAAAAAATATAATT
Found at i:45682903 original size:21 final size:21
Alignment explanation
Indices: 45682869--45682908 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
45682859 TGTGATTCTG
* *
45682869 CATACTTGTTTCGGTAGAACC
1 CATACATGTATCGGTAGAACC
45682890 CATACATGTATCGGTAGAA
1 CATACATGTATCGGTAGAA
45682909 GTACAAGGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (21 bp):
CATACATGTATCGGTAGAACC
Found at i:45683088 original size:21 final size:21
Alignment explanation
Indices: 45683062--45683101 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
45683052 GGAGTTTTTA
*
45683062 GTCACTTGTATCGGTAGAACT
1 GTCACTGGTATCGGTAGAACT
45683083 GTCACTGGTATCGGTAGAA
1 GTCACTGGTATCGGTAGAA
45683102 ATCTGCACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (21 bp):
GTCACTGGTATCGGTAGAACT
Found at i:45684688 original size:16 final size:17
Alignment explanation
Indices: 45684669--45684713 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
45684659 TATTTCTAAT
*
45684669 AATTTC-TATTTTTTAA
1 AATTTCATAATTTTTAA
*
45684685 AA-TTCATAATTTTTAC
1 AATTTCATAATTTTTAA
45684701 AATTTCATAATTT
1 AATTTCATAATTT
45684714 ATCTAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 12 0.48
17 10 0.40
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTTCATAATTTTTAA
Found at i:45684698 original size:17 final size:18
Alignment explanation
Indices: 45684676--45684713 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
45684666 AATAATTTCT
45684676 ATTTTTTA-AAATTCATA
1 ATTTTTTACAAATTCATA
*
45684693 A-TTTTTACAATTTCATA
1 ATTTTTTACAAATTCATA
45684710 ATTT
1 ATTT
45684714 ATCTAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
16 6 0.33
17 10 0.56
18 2 0.11
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTTTACAAATTCATA
Found at i:45685054 original size:6 final size:6
Alignment explanation
Indices: 45685043--45685074 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
45685033 ACTCTCTTCA
45685043 CAATTC CAATTC CAATTC CAATTC CAATTC CA
1 CAATTC CAATTC CAATTC CAATTC CAATTC CA
45685075 CCCACAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (6 bp):
CAATTC
Found at i:45685082 original size:18 final size:19
Alignment explanation
Indices: 45685041--45685082 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
45685031 TGACTCTCTT
**
45685041 CACAATTCCAATTCCAATT
1 CACAATTCCAATTCCAACC
45685060 C-CAATTCCAATTCC-ACC
1 CACAATTCCAATTCCAACC
45685077 CACAAT
1 CACAAT
45685083 AGCTGTCTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 2 0.10
18 17 0.85
19 1 0.05
ACGTcount: A:0.36, C:0.38, G:0.00, T:0.26
Consensus pattern (19 bp):
CACAATTCCAATTCCAACC
Found at i:45686818 original size:19 final size:18
Alignment explanation
Indices: 45686796--45686850 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
45686786 TATTTTATGT
45686796 TTTTAGAATTTTTTTGAAA
1 TTTTA-AATTTTTTTGAAA
*
45686815 TTTTAAAGTATTTTAT-AAA
1 TTTTAAA-T-TTTTTTGAAA
45686834 TTTTAAATTATTTTTGA
1 TTTTAAATT-TTTTTGA
45686851 TGTAGTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 1 0.03
18 7 0.23
19 17 0.57
20 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (18 bp):
TTTTAAATTTTTTTGAAA
Found at i:45692018 original size:20 final size:20
Alignment explanation
Indices: 45691993--45692033 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
45691983 TGATTGTAAC
45691993 ATTTCTTCACCTTACCAAAA
1 ATTTCTTCACCTTACCAAAA
45692013 ATTTCTTCACCTTACCAAAA
1 ATTTCTTCACCTTACCAAAA
45692033 A
1 A
45692034 AATCTTTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (20 bp):
ATTTCTTCACCTTACCAAAA
Found at i:45692039 original size:20 final size:20
Alignment explanation
Indices: 45691996--45692039 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
45691986 TTGTAACATT
**
45691996 TCTTCACCTTACCAAAAATT
1 TCTTCACCTTACCAAAAAAA
45692016 TCTTCACCTTACCAAAAAAA
1 TCTTCACCTTACCAAAAAAA
45692036 TCTT
1 TCTT
45692040 TTACAAGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.30, G:0.00, T:0.34
Consensus pattern (20 bp):
TCTTCACCTTACCAAAAAAA
Found at i:45693635 original size:2 final size:2
Alignment explanation
Indices: 45693598--45693626 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
45693588 TGTATTTGGT
45693598 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45693627 CACATATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45693752 original size:30 final size:31
Alignment explanation
Indices: 45693695--45693761 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
45693685 TAATCCCAAT
45693695 AAATTTGATCAATTTTATCTTCTATACTTTTC
1 AAATTTGATCAATTTTATC-TCTATACTTTTC
*
45693727 GAATTTG-TCAATTTTAGTC-CTATACTTTTC
1 AAATTTGATCAATTTTA-TCTCTATACTTTTC
45693757 AAATT
1 AAATT
45693762 CTAAAAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 15 0.47
31 9 0.28
32 8 0.25
ACGTcount: A:0.28, C:0.15, G:0.06, T:0.51
Consensus pattern (31 bp):
AAATTTGATCAATTTTATCTCTATACTTTTC
Found at i:45695673 original size:29 final size:29
Alignment explanation
Indices: 45695581--45695681 Score: 93
Period size: 28 Copynumber: 3.5 Consensus size: 29
45695571 ACCCGGGGGC
*
45695581 AAAATGGTAGATTTTGGTGAAATTGGGGTTA
1 AAAATGGTA-ATTTTAGTGAAATTGGGG-TA
* * * *
45695612 AAAATGG-GATTTAAG-GAAGTTTAAGGGT-
1 AAAATGGTAATTTTAGTGAA-ATT-GGGGTA
45695640 AAAATGGTAATTTTAGTGAAATTGGGGTA
1 AAAATGGTAATTTTAGTGAAATTGGGGTA
45695669 AAAAT-GTAATTTT
1 AAAATGGTAATTTT
45695682 TTTTGGAAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 13
0.72 0.12 0.17
Matches are distributed among these distances:
28 22 0.39
29 21 0.38
30 6 0.11
31 7 0.12
ACGTcount: A:0.38, C:0.00, G:0.28, T:0.35
Consensus pattern (29 bp):
AAAATGGTAATTTTAGTGAAATTGGGGTA
Found at i:45695893 original size:30 final size:31
Alignment explanation
Indices: 45695661--45695896 Score: 256
Period size: 30 Copynumber: 7.8 Consensus size: 31
45695651 TTTAGTGAAA
*
45695661 TTGGGGTAAAAATGTAATTTTTTTTGG-AAA--T
1 TTGGGGTCAAAATGTAA---TTTTTGGAAAAGTT
* * *
45695692 TTAGGGTCAAAATATGA-TTTTGGAAAAGTT
1 TTGGGGTCAAAATGTAATTTTTGGAAAAGTT
45695722 TTGGGGTCAAAATGTAA-TTTTGGAAAAGTT
1 TTGGGGTCAAAATGTAATTTTTGGAAAAGTT
*
45695752 TTGGGGTCAACATGTAA-TTTTGGAAAAGTT
1 TTGGGGTCAAAATGTAATTTTTGGAAAAGTT
* * *
45695782 TTAGGGTCAAAATGTAATTTCTAG-AAAGTT
1 TTGGGGTCAAAATGTAATTTTTGGAAAAGTT
* * * *
45695812 TTGGTGTTAAAATAT-ATTTTTGGAAAATTT
1 TTGGGGTCAAAATGTAATTTTTGGAAAAGTT
* *
45695842 TTAGGGTCAAAATGTAATTTTTAG-AAAGTT
1 TTGGGGTCAAAATGTAATTTTTGGAAAAGTT
45695872 TTGGGGTCAAAATGTAATTTTTGGA
1 TTGGGGTCAAAATGTAATTTTTGGA
45695897 CAATTTAGGG
Statistics
Matches: 171, Mismatches: 27, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
27 6 0.04
28 3 0.02
29 6 0.04
30 132 0.77
31 24 0.14
ACGTcount: A:0.33, C:0.03, G:0.23, T:0.40
Consensus pattern (31 bp):
TTGGGGTCAAAATGTAATTTTTGGAAAAGTT
Found at i:45696929 original size:13 final size:13
Alignment explanation
Indices: 45696911--45696940 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
45696901 AAATAAAAAT
*
45696911 TTAATTATTATTA
1 TTAATTAATATTA
45696924 TTAATTAATATTA
1 TTAATTAATATTA
45696937 TTAA
1 TTAA
45696941 AACATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTAATTAATATTA
Found at i:45697701 original size:29 final size:29
Alignment explanation
Indices: 45697664--45697733 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
45697654 AAATTTATAA
*
45697664 TAATGTT-AAATTCAAGTTAAATTCAAATT
1 TAATGTTAAAATTCAAGTTAAAAT-AAATT
* * *
45697693 TAATTTTAAAATTGAATTTAAAATAAATT
1 TAATGTTAAAATTCAAGTTAAAATAAATT
**
45697722 TAAAATTAAAAT
1 TAATGTTAAAAT
45697734 AAATTTAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 21 0.62
30 13 0.38
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.41
Consensus pattern (29 bp):
TAATGTTAAAATTCAAGTTAAAATAAATT
Found at i:45697712 original size:12 final size:12
Alignment explanation
Indices: 45697680--45697731 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
45697670 TAAATTCAAG
* *
45697680 TTAAATTCAAAT
1 TTAAATTTAAAA
*
45697692 TTAATTTTAAAA
1 TTAAATTTAAAA
*
45697704 TTGAATTTAAAA
1 TTAAATTTAAAA
45697716 -TAAATTTAAAA
1 TTAAATTTAAAA
45697727 TTAAA
1 TTAAA
45697732 ATAAATTTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
11 10 0.30
12 23 0.70
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (12 bp):
TTAAATTTAAAA
Found at i:45697753 original size:17 final size:16
Alignment explanation
Indices: 45697701--45697744 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
45697691 TTTAATTTTA
*
45697701 AAATTGAATTTAAAAT
1 AAATTTAATTTAAAAT
*
45697717 AAATTTAAAATTAAAAT
1 AAATTT-AATTTAAAAT
45697734 AAATTTAATTT
1 AAATTTAATTT
45697745 CAAAGTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (16 bp):
AAATTTAATTTAAAAT
Found at i:45700490 original size:29 final size:30
Alignment explanation
Indices: 45700458--45700517 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
45700448 ACTTACTTTA
*
45700458 TTGTTAATTTTGTTA-TATTTTAGAGATAT
1 TTGTTAATTTTGTTACTATTTTAGAAATAT
45700487 TTGTTAATTTTGTTACTATTTTAGAAATAT
1 TTGTTAATTTTGTTACTATTTTAGAAATAT
45700517 T
1 T
45700518 AATTTATGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 15 0.52
30 14 0.48
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTACTATTTTAGAAATAT
Found at i:45700584 original size:21 final size:20
Alignment explanation
Indices: 45700560--45700620 Score: 50
Period size: 25 Copynumber: 2.7 Consensus size: 20
45700550 TTAAGTATAT
45700560 ATTTTTTAAATTTTATTTTCA
1 ATTTTTTAAATTTTATTTT-A
*
45700581 ATTTGTTAGGAAATATTTATTTTA
1 ATTT-TT--TAAAT-TTTATTTTA
45700605 ATATTTTTAATATTTT
1 AT-TTTTTAA-ATTTT
45700621 TAATACATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
21 4 0.12
22 7 0.22
23 2 0.06
24 9 0.28
25 10 0.31
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (20 bp):
ATTTTTTAAATTTTATTTTA
Found at i:45700614 original size:9 final size:9
Alignment explanation
Indices: 45700600--45700625 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
45700590 GAAATATTTA
45700600 TTTTAATAT
1 TTTTAATAT
45700609 TTTTAATAT
1 TTTTAATAT
45700618 TTTTAATA
1 TTTTAATA
45700626 CATTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTTAATAT
Found at i:45701742 original size:19 final size:19
Alignment explanation
Indices: 45701720--45701764 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
45701710 TTATATTAGG
45701720 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
45701739 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
45701758 ATTTAAT
1 ATTTAAT
45701765 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:45702587 original size:15 final size:16
Alignment explanation
Indices: 45702567--45702596 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45702557 CTTCCCTATT
45702567 TTCTA-TTTCTTTTAG
1 TTCTATTTTCTTTTAG
45702582 TTCTATTTTCTTTTA
1 TTCTATTTTCTTTTA
45702597 TTTTTAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.13, C:0.13, G:0.03, T:0.70
Consensus pattern (16 bp):
TTCTATTTTCTTTTAG
Found at i:45702601 original size:22 final size:22
Alignment explanation
Indices: 45702562--45702622 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
45702552 TTCGACTTCC
* *
45702562 CTATTTTCTATTT-CTTTTAGTT
1 CTATTTTCT-TTTATTTTTAATT
45702584 CTATTTTCTTTTATTTTTAATT
1 CTATTTTCTTTTATTTTTAATT
*
45702606 CT-GTTTCTTTTATTTTT
1 CTATTTTCTTTTATTTTT
45702623 CCTTAGATCA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 17 0.49
22 18 0.51
ACGTcount: A:0.13, C:0.11, G:0.03, T:0.72
Consensus pattern (22 bp):
CTATTTTCTTTTATTTTTAATT
Found at i:45704272 original size:58 final size:57
Alignment explanation
Indices: 45704210--45704361 Score: 173
Period size: 58 Copynumber: 2.6 Consensus size: 57
45704200 GCAAAATGGT
* *
45704210 AATTTTAGACTTTTGAGGGTAAAATGGTAATTTTGGAAAAATTCGGGGAT-AAAAATGA
1 AATTTTAGACTTTCGAGGGTAAAATGGTAATTTTGGAAAAA-TC-AGGATCAAAAATGA
* *
45704268 AATTTTAGA-TGTTCGAGGGTAAAATGGTAATTTTTAGAAAAATCAGGATCAAAAATGG
1 AATTTTAGACT-TTCGAGGGTAAAATGGTAA-TTTTGGAAAAATCAGGATCAAAAATGA
* * * *
45704326 GATTTTCAGACATCCGGGGGTAAAATGGTAATTTTG
1 AATTTT-AGACTTTCGAGGGTAAAATGGTAATTTTG
45704362 AGAGTTTCGG
Statistics
Matches: 80, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
57 5 0.06
58 45 0.56
59 30 0.38
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (57 bp):
AATTTTAGACTTTCGAGGGTAAAATGGTAATTTTGGAAAAATCAGGATCAAAAATGA
Found at i:45704299 original size:28 final size:27
Alignment explanation
Indices: 45704202--45704301 Score: 87
Period size: 28 Copynumber: 3.5 Consensus size: 27
45704192 ACTCGGGGGC
*
45704202 AAAATGGTAATTTTAGACTTTTGAGGGT
1 AAAATGGTAATTTTAGA-TTTCGAGGGT
* *
45704230 AAAATGGTAATTTTGGAAAAATTCG-GGGAT
1 AAAATGGTAATTTT---AGATTTCGAGGG-T
*
45704260 AAAAAT-GAAATTTTAGATGTTCGAGGGT
1 -AAAATGGTAATTTTAGAT-TTCGAGGGT
45704288 AAAATGGTAATTTT
1 AAAATGGTAATTTT
45704302 TAGAAAAATC
Statistics
Matches: 57, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 26 0.46
29 6 0.11
30 11 0.19
31 7 0.12
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.35
Consensus pattern (27 bp):
AAAATGGTAATTTTAGATTTCGAGGGT
Found at i:45704373 original size:28 final size:27
Alignment explanation
Indices: 45704197--45704389 Score: 86
Period size: 28 Copynumber: 6.7 Consensus size: 27
45704187 TGGATACTCG
* ** *
45704197 GGGGCAAAATGGTAATTTTAGACTTTT
1 GGGGTAAAATGGTAATTTTAGAAATTC
*
45704224 GAGGGTAAAATGGTAATTTTGGAAAAATTC
1 G-GGGTAAAATGGTAATTTT--AGAAATTC
* **
45704254 GGGGATAAAAAT-GAAATTTTAGATGTTC
1 GGGG-T-AAAATGGTAATTTTAGAAATTC
*
45704282 GAGGGTAAAATGGTAATTTTTAGAAAAATC
1 G-GGGTAAAATGGTAA-TTTTAG-AAATTC
* * * * *
45704312 AGGATCAAAAATGG-GATTTTCAGACATCC
1 GGGGT--AAAATGGTAATTTT-AGAAATTC
**
45704341 GGGGGTAAAATGGTAATTTTGAGAGTTTC
1 -GGGGTAAAATGGTAATTTT-AGAAATTC
45704370 GGGGTCAGAAATGG-AATTTT
1 GGGGT-A-AAATGGTAATTTT
45704390 TGGAAGTTTG
Statistics
Matches: 124, Mismatches: 26, Indels: 30
0.69 0.14 0.17
Matches are distributed among these distances:
27 6 0.05
28 39 0.31
29 39 0.31
30 28 0.23
31 12 0.10
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (27 bp):
GGGGTAAAATGGTAATTTTAGAAATTC
Found at i:45704391 original size:30 final size:29
Alignment explanation
Indices: 45704347--45704600 Score: 107
Period size: 30 Copynumber: 8.7 Consensus size: 29
45704337 ATCCGGGGGT
45704347 AAAATGGTAA-TTTTGAGAGTTTCGGGGTCA
1 AAAATGG-AATTTTTGAGAGTTT-GGGGTCA
*
45704377 GAAATGGAATTTTTG-GAAGTTTGGGGTCA
1 AAAATGGAATTTTTGAG-AGTTTGGGGTCA
*
45704406 AAAATAGAATTTTTTGA-AGTTTGGAGG-CA
1 AAAATGGAA-TTTTTGAGAGTTTGG-GGTCA
** **
45704435 AAAAT-GTTTTTTTG-GAAGTTTCAAGGTCA
1 AAAATGGAATTTTTGAG-AGTTT-GGGGTCA
* * ** *
45704464 AAAATGGAAATTTTG-GAAATTCAAGAGT-A
1 AAAATGGAATTTTTGAG-AGTT-TGGGGTCA
* * * * *
45704493 GAAATGTAATTTTTGGAAATTTTGAGGTCA
1 AAAATGGAATTTTT-GAGAGTTTGGGGTCA
45704523 AAAATGGAATTTTTG-GAAGTTTAGGGGT-A
1 AAAATGGAATTTTTGAG-AGTTT-GGGGTCA
* * * *
45704552 AAAATGTAGTTTTTTGA-AGTTTTAGGGTTA
1 AAAATGGA-ATTTTTGAGAG-TTTGGGGTCA
* *
45704582 AAAATGTAATTTTAGAGAG
1 AAAATGGAATTTTTGAGAG
45704601 GTTCAGGAGT
Statistics
Matches: 170, Mismatches: 33, Indels: 42
0.69 0.13 0.17
Matches are distributed among these distances:
27 6 0.04
28 8 0.05
29 77 0.45
30 79 0.46
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (29 bp):
AAAATGGAATTTTTGAGAGTTTGGGGTCA
Found at i:45704402 original size:29 final size:29
Alignment explanation
Indices: 45704347--45704594 Score: 175
Period size: 29 Copynumber: 8.4 Consensus size: 29
45704337 ATCCGGGGGT
45704347 AAAATGGTAA-TTTT-GAGAGTTTCGGGGTCA
1 AAAATGG-AATTTTTGGA-AGTTT-GGGGTCA
*
45704377 GAAATGGAATTTTTGGAAGTTTGGGGTCA
1 AAAATGGAATTTTTGGAAGTTTGGGGTCA
* *
45704406 AAAATAGAATTTTTTGAAGTTTGGAGG-CA
1 AAAATGGAATTTTTGGAAGTTTGG-GGTCA
** **
45704435 AAAAT-GTTTTTTTGGAAGTTTCAAGGTCA
1 AAAATGGAATTTTTGGAAGTTT-GGGGTCA
* * ** *
45704464 AAAATGGAAATTTTGGAAATTCAAGAGT-A
1 AAAATGGAATTTTTGGAAGTT-TGGGGTCA
* * * *
45704493 GAAATGTAATTTTTGGAAATTTTGAGGTCA
1 AAAATGGAATTTTTGG-AAGTTTGGGGTCA
45704523 AAAATGGAATTTTTGGAAGTTTAGGGGT-A
1 AAAATGGAATTTTTGGAAGTTT-GGGGTCA
* * * * *
45704552 AAAATGTAGTTTTTTGAAGTTTTAGGGTTA
1 AAAATGGAATTTTTGGAAG-TTTGGGGTCA
*
45704582 AAAATGTAATTTT
1 AAAATGGAATTTT
45704595 AGAGAGGTTC
Statistics
Matches: 173, Mismatches: 33, Indels: 24
0.75 0.14 0.10
Matches are distributed among these distances:
28 15 0.09
29 86 0.50
30 70 0.40
31 2 0.01
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.37
Consensus pattern (29 bp):
AAAATGGAATTTTTGGAAGTTTGGGGTCA
Found at i:45704410 original size:59 final size:58
Alignment explanation
Indices: 45704347--45704635 Score: 191
Period size: 59 Copynumber: 4.9 Consensus size: 58
45704337 ATCCGGGGGT
* * **
45704347 AAAATGGTAATTTTGAGAGTTTCGGGGTCAGAAATGGAATTTTTGGAAGTTTGGGGTCA
1 AAAATGG-AATTTTGAGAGTTTCGGGGTCAAAAATGTAATTTTTGGAAGTTTAAGGTCA
* *
45704406 AAAATAGAATTTTTTGA-AGTTT-GGAGG-CAAAAATGT-TTTTTTGGAAGTTTCAAGGTCA
1 AAAATGGAA--TTTTGAGAGTTTCGG-GGTCAAAAATGTAATTTTTGGAAGTTT-AAGGTCA
** * * * * *
45704464 AAAATGGAAATTTTG-GAAATTCAAGAGT-AGAAATGTAATTTTTGGAAATTTTGAGGTCA
1 AAAATGG-AATTTTGAGAGTTTC-GGGGTCAAAAATGTAATTTTTGG-AAGTTTAAGGTCA
* * * * *
45704523 AAAATGGAATTTTTG-GAAGTTTAGGGGT-AAAAATGTAGTTTTTTGAAGTTTTAGGGTTA
1 AAAATGGAA-TTTTGAG-AGTTTCGGGGTCAAAAATGTAATTTTTGGAAG-TTTAAGGTCA
* * * *
45704582 AAAATGTAATTTTAGAGAGGTTCAGGAGTC-AAAATATAATTTTTGGACAGTTTA
1 AAAATGGAATTTT-GAGAGTTTC-GGGGTCAAAAATGTAATTTTTGGA-AGTTTA
45704636 GGGACCTTTA
Statistics
Matches: 177, Mismatches: 34, Indels: 37
0.71 0.14 0.15
Matches are distributed among these distances:
57 21 0.12
58 38 0.21
59 79 0.45
60 37 0.21
61 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (58 bp):
AAAATGGAATTTTGAGAGTTTCGGGGTCAAAAATGTAATTTTTGGAAGTTTAAGGTCA
Found at i:45704447 original size:28 final size:29
Alignment explanation
Indices: 45704364--45704634 Score: 157
Period size: 29 Copynumber: 9.2 Consensus size: 29
45704354 TAATTTTGAG
*
45704364 AGTTTCGG-GGTCAGAAATGGAATTTTTGGA
1 AGTTT-GGAGGTCAAAAAT-GAATTTTTGGA
*
45704394 AGTTTGG-GGTCAAAAATAGAATTTTTTGA
1 AGTTTGGAGGTCAAAAAT-GAATTTTTGGA
**
45704423 AGTTTGGAGG-CAAAAATGTTTTTTTGGA
1 AGTTTGGAGGTCAAAAATGAATTTTTGGA
** *
45704451 AGTTTCAAGGTCAAAAATGGAAATTTTGGA
1 AGTTTGGAGGTCAAAAAT-GAATTTTTGGA
* ** *
45704481 A-ATTCAAGAGT-AGAAATGTAATTTTTGGA
1 AGTTTGGAG-GTCAAAAATG-AATTTTTGGA
* *
45704510 AATTTTGAGGTCAAAAATGGAATTTTTGGA
1 AGTTTGGAGGTCAAAAAT-GAATTTTTGGA
* *
45704540 AGTTTAGG-GGT-AAAAATGTAGTTTTTTGA
1 AGTTT-GGAGGTCAAAAATG-AATTTTTGGA
* * *
45704569 AGTTT-TAGGGTTAAAAATGTAATTTTAGAGA
1 AGTTTGGA-GGTCAAAAATG-AATTTTTG-GA
* *
45704600 GGTTCAGGA-GTCAAAATAT-AATTTTTGGA
1 AGTT-TGGAGGTCAAAA-ATGAATTTTTGGA
45704629 CAGTTT
1 -AGTTT
45704635 AGGGACCTTT
Statistics
Matches: 190, Mismatches: 33, Indels: 37
0.73 0.13 0.14
Matches are distributed among these distances:
28 18 0.09
29 89 0.47
30 67 0.35
31 13 0.07
32 2 0.01
33 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (29 bp):
AGTTTGGAGGTCAAAAATGAATTTTTGGA
Found at i:45705495 original size:9 final size:9
Alignment explanation
Indices: 45705483--45705518 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
45705473 CATTACTGCC
45705483 ATTAATATT
1 ATTAATATT
45705492 ATTAATATT
1 ATTAATATT
**
45705501 AACAATATT
1 ATTAATATT
45705510 ATTAATATT
1 ATTAATATT
45705519 TAAGCACTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (9 bp):
ATTAATATT
Found at i:45706150 original size:6 final size:6
Alignment explanation
Indices: 45706139--45706224 Score: 65
Period size: 6 Copynumber: 15.0 Consensus size: 6
45706129 TTTGGACATT
* *
45706139 AATTTA AATTTA AATTTA AATTTA TAA--TA AATTTA AATTT- TATGTA
1 AATTTA AATTTA AATTTA AATTTA -AATTTA AATTTA AATTTA AATTTA
* * * **
45706185 AATTTG AATTCA AA-ATA AATTT- AATTTA AAAATA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
45706225 TATCCCATTG
Statistics
Matches: 60, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
4 2 0.03
5 13 0.22
6 43 0.72
7 2 0.03
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.45
Consensus pattern (6 bp):
AATTTA
Found at i:45706169 original size:17 final size:17
Alignment explanation
Indices: 45706139--45706224 Score: 84
Period size: 17 Copynumber: 5.0 Consensus size: 17
45706129 TTTGGACATT
*
45706139 AATTTAAATTTAAATTTA
1 AATTTAAA-ATAAATTTA
*
45706157 AATTTATAATAAATTTA
1 AATTTAAAATAAATTTA
* ** *
45706174 AATTTTATGTAAATTTG
1 AATTTAAAATAAATTTA
*
45706191 AATTCAAAATAAATTT-
1 AATTTAAAATAAATTTA
45706207 AATTTAAAAATAAATTTA
1 AATTT-AAAATAAATTTA
45706225 TATCCCATTG
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
16 4 0.07
17 43 0.80
18 7 0.13
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.45
Consensus pattern (17 bp):
AATTTAAAATAAATTTA
Found at i:45706221 original size:34 final size:34
Alignment explanation
Indices: 45706137--45706224 Score: 97
Period size: 34 Copynumber: 2.6 Consensus size: 34
45706127 ACTTTGGACA
* * *
45706137 TTAATTTAAATTTAAATTTAAATTTATAATAAAT
1 TTAATTTAAATATAAATTTAAATTCAAAATAAAT
* * *
45706171 TTAAATTT-TATGTAAATTTGAATTCAAAATAAAT
1 TT-AATTTAAATATAAATTTAAATTCAAAATAAAT
*
45706205 TTAATTTAAAAATAAATTTA
1 TTAATTTAAATATAAATTTA
45706225 TATCCCATTG
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
33 5 0.12
34 33 0.77
35 5 0.12
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (34 bp):
TTAATTTAAATATAAATTTAAATTCAAAATAAAT
Found at i:45706954 original size:206 final size:199
Alignment explanation
Indices: 45706557--45707061 Score: 645
Period size: 206 Copynumber: 2.5 Consensus size: 199
45706547 TTGACTTCCT
* * * * * * **
45706557 CCTGCTTCTCAGTATCTCATCTGAAAGCTAGGGATTCGAAGATTTACTCGTATCAG-GCGTTGAG
1 CCTGCTTCTCAGTGTCTCATCAGGAAGCT-GGGGTTCGAAGATTTGCTCGCATTTGAGCGTTGAG
* * * *
45706621 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTCTG
65 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACATCACTTATTTCAATCCGCTTCTCTG
* * * *
45706686 TATCTCATCAGGAAGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAACTAACCGTTTTATTGC
130 GATCTCATCAGGAAGAATTTGGTACACTTCTCAGTATCTCATAAGGAAACTAACCATTTTATTGC
45706751 TTCGA
195 TTCGA
*
45706756 CCTGCTTCTCTGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCA-TTGAGCCTGGGTT
1 CCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTTGAG-C---G-T
* * * * *
45706820 TGATTTGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCACATCACTTATTTTAATCCGCTTC
61 TGAGTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACATCACTTATTTCAATCCGCTTC
* * * * *
45706885 TTTGGATCTCCTCAGTAAGACGAATTTGGTACACTTCTCAGTATCTCATAAGGAAGCTAACTATT
126 TCTGGATCTCATCAG---GAAGAATTTGGTACACTTCTCAGTATCTCATAAGGAAACTAACCATT
45706950 TTATTGCTTCGA
188 TTATTGCTTCGA
* *
45706962 CTTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGTATTTGAGCGTTGAGT
1 CCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTTGAGCGTTGAGT
*
45707027 TGGTATACTTCTCTGTATCTCATCAGGAAGATGAC
66 TGGTCTACTTCTCTGTATCTCATCAGGAAGATGAC
45707062 TGCCTCACTA
Statistics
Matches: 261, Mismatches: 35, Indels: 17
0.83 0.11 0.05
Matches are distributed among these distances:
197 1 0.00
198 20 0.08
199 26 0.10
202 37 0.14
203 70 0.27
206 102 0.39
207 5 0.02
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (199 bp):
CCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTTGAGCGTTGAGT
TGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACATCACTTATTTCAATCCGCTTCTCTGG
ATCTCATCAGGAAGAATTTGGTACACTTCTCAGTATCTCATAAGGAAACTAACCATTTTATTGCT
TCGA
Found at i:45707558 original size:49 final size:49
Alignment explanation
Indices: 45707444--45707548 Score: 156
Period size: 49 Copynumber: 2.1 Consensus size: 49
45707434 CAACTTAAAC
**
45707444 CTTTCCCTTCAAATCTTCGTAGTACGGGATCCGCCGTCGTGGCTTAGAT
1 CTTTCCCTTCATGTCTTCGTAGTACGGGATCCGCCGTCGTGGCTTAGAT
* * *
45707493 CTTTCTCTTCATGTCTTCGTGGTACTGGATCCGCCGTCGTGGCTTAGAT
1 CTTTCCCTTCATGTCTTCGTAGTACGGGATCCGCCGTCGTGGCTTAGAT
*
45707542 TTTTCCC
1 CTTTCCC
45707549 GTTTTGTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.12, C:0.29, G:0.22, T:0.37
Consensus pattern (49 bp):
CTTTCCCTTCATGTCTTCGTAGTACGGGATCCGCCGTCGTGGCTTAGAT
Found at i:45707794 original size:100 final size:100
Alignment explanation
Indices: 45707513--45707852 Score: 290
Period size: 100 Copynumber: 3.4 Consensus size: 100
45707503 ATGTCTTCGT
* * * * * * * * *
45707513 GGTACTGGATCCGCCGTCGTGG-CTTAGATTTTTCCCGTT-TTGTCTTTTGAGGTACACGGTCCG
1 GGTACTGGATCCGCCATTGCGGTCTTAGATCTTTCCC-TTCATGTCTTCTGAGATACAAGGTCTG
* * * **
45707576 CCGTTATGGT-AATCACCTTTCCTTTTGTATCTTTAT
65 CCGTTACGATCGA-CACCTTTCCTTTTGTATCTTTGC
* * * * * * *
45707612 GGTACTGGATCCGCCCTTGAGGTCTTAGATCTTTCCCATCGTGTCTTTTGAGATATAAGGTTTGC
1 GGTACTGGATCCGCCATTGCGGTCTTAGATCTTTCCCTTCATGTCTTCTGAGATACAAGGTCTGC
* * *
45707677 CGTTACGGTCGCCACCTTTCCTTGTGTATCTTTGC
66 CGTTACGATCGACACCTTTCCTTTTGTATCTTTGC
* * *
45707712 GGTACTGGATCCGCCATTGCGATCTTAGATCTTTCCCTTCATGTCTTCTGAGGTACACGGTCTGC
1 GGTACTGGATCCGCCATTGCGGTCTTAGATCTTTCCCTTCATGTCTTCTGAGATACAAGGTCTGC
* * ** * * *
45707777 TGTTGCGATTTAGACCTTTCTCTTTTGTCTTTTTGC
66 CGTTACGATCGACACCTTTC-CTTTTGTATCTTTGC
* * * *
45707813 GGTATTGGATCCACCGTCGCGGTCTTAGATCTTTCCCTTC
1 GGTACTGGATCCGCCATTGCGGTCTTAGATCTTTCCCTTC
45707853 GTGTTTCATG
Statistics
Matches: 195, Mismatches: 42, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
99 20 0.10
100 128 0.66
101 47 0.24
ACGTcount: A:0.13, C:0.25, G:0.22, T:0.40
Consensus pattern (100 bp):
GGTACTGGATCCGCCATTGCGGTCTTAGATCTTTCCCTTCATGTCTTCTGAGATACAAGGTCTGC
CGTTACGATCGACACCTTTCCTTTTGTATCTTTGC
Found at i:45708857 original size:6 final size:6
Alignment explanation
Indices: 45708848--45708913 Score: 66
Period size: 6 Copynumber: 11.5 Consensus size: 6
45708838 CGACCTCTCC
* * * *
45708848 TTTTCT TTTTCT TTTT-T CTTT-T TTTTGT TTTTGT TTTTGT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
*
45708894 TCTTCT TTTTC- TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTT
45708914 ATTCATTGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
5 13 0.25
6 40 0.75
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.83
Consensus pattern (6 bp):
TTTTCT
Found at i:45714562 original size:30 final size:30
Alignment explanation
Indices: 45714526--45714736 Score: 141
Period size: 30 Copynumber: 7.1 Consensus size: 30
45714516 ATTCAGGGGT
* *
45714526 AAAATGGTAATTTTGGGAGTTTCGAGGTCA
1 AAAATGGTAATTTTGGAAGTTTAGAGGTCA
* *
45714556 AAAATGG-AATTTTTGGAAGTTTTGATGTCA
1 AAAATGGTAA-TTTTGGAAGTTTAGAGGTCA
* * *
45714586 AAAATGGAAATTTTGGAAATTT-GAGG-GA
1 AAAATGGTAATTTTGGAAGTTTAGAGGTCA
* * * *
45714614 AAAAT-GTAATTTTTGGAAATTTTGGGGTTA
1 AAAATGGTAA-TTTTGGAAGTTTAGAGGTCA
*
45714644 AAAATGG-AATTTTTGGAAGTTTAGGGGT-A
1 AAAATGGTAA-TTTTGGAAGTTTAGAGGTCA
* * * * * *
45714673 AAAAT-TTAGTTTTCTGAAGTTTCGAGATAA
1 AAAATGGTAATTTT-GGAAGTTTAGAGGTCA
*
45714703 AAAAT-GTAATTTTGGAGAAGTTTAGGGGTCA
1 AAAATGGTAATTTT-G-GAAGTTTAGAGGTCA
45714734 AAA
1 AAA
45714737 TACAATTTTT
Statistics
Matches: 146, Mismatches: 25, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
27 3 0.02
28 22 0.15
29 25 0.17
30 79 0.54
31 17 0.12
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.36
Consensus pattern (30 bp):
AAAATGGTAATTTTGGAAGTTTAGAGGTCA
Found at i:45714617 original size:58 final size:58
Alignment explanation
Indices: 45714526--45714669 Score: 173
Period size: 58 Copynumber: 2.5 Consensus size: 58
45714516 ATTCAGGGGT
* * * * *
45714526 AAAATGGTAATTTTGGGAGTTTCGAGGTCAAAAATGGAATTTTTGGAAGTTTTGATGTCA
1 AAAATGGAAATTTTGGAAGTTT-GAGG-GAAAAATGGAATTTTTGGAAATTTTGAGGTCA
* * * *
45714586 AAAATGGAAATTTTGGAAATTTGAGGGAAAAATGTAATTTTTGGAAATTTTGGGGTTA
1 AAAATGGAAATTTTGGAAGTTTGAGGGAAAAATGGAATTTTTGGAAATTTTGAGGTCA
*
45714644 AAAATGGAATTTTTGGAAGTTT-AGGG
1 AAAATGGAAATTTTGGAAGTTTGAGGG
45714670 GTAAAAATTT
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
57 4 0.05
58 46 0.63
59 4 0.05
60 19 0.26
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (58 bp):
AAAATGGAAATTTTGGAAGTTTGAGGGAAAAATGGAATTTTTGGAAATTTTGAGGTCA
Found at i:45715657 original size:14 final size:14
Alignment explanation
Indices: 45715638--45715666 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
45715628 CCTTTTGAAA
45715638 CACTTTTACTAATC
1 CACTTTTACTAATC
45715652 CACTTTTACTAATC
1 CACTTTTACTAATC
45715666 C
1 C
45715667 TTTGTTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.31, G:0.00, T:0.41
Consensus pattern (14 bp):
CACTTTTACTAATC
Found at i:45715860 original size:9 final size:9
Alignment explanation
Indices: 45715848--45715883 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
45715838 CATTACTGCC
45715848 ATTAATATT
1 ATTAATATT
45715857 ATTAATATT
1 ATTAATATT
**
45715866 AACAATATT
1 ATTAATATT
45715875 ATTAATATT
1 ATTAATATT
45715884 TAAACACTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (9 bp):
ATTAATATT
Found at i:45716553 original size:6 final size:6
Alignment explanation
Indices: 45716536--45716621 Score: 56
Period size: 6 Copynumber: 15.0 Consensus size: 6
45716526 TTTGGACATT
* * *
45716536 AATTTA ATTTTA AATTTA AATTTA TAA--TA AATTTA AATTT- TATGTA
1 AATTTA AATTTA AATTTA AATTTA -AATTTA AATTTA AATTTA AATTTA
* * * **
45716582 AATTTA AATTCA AA-AT- AATTTT AATTTA AAAATA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
45716622 TATCCCATTG
Statistics
Matches: 59, Mismatches: 15, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
4 4 0.07
5 6 0.10
6 47 0.80
7 2 0.03
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (6 bp):
AATTTA
Found at i:45716566 original size:17 final size:17
Alignment explanation
Indices: 45716546--45716621 Score: 82
Period size: 17 Copynumber: 4.5 Consensus size: 17
45716536 AATTTAATTT
*
45716546 TAAATTTAAATTTATAA
1 TAAATTTAAATTTAAAA
* **
45716563 TAAATTTAAATTTTATG
1 TAAATTTAAATTTAAAA
*
45716580 TAAATTTAAATTCAAAA
1 TAAATTTAAATTTAAAA
*
45716597 T-AATTTTAATTTAAAAA
1 TAAATTTAAATTT-AAAA
45716614 TAAATTTA
1 TAAATTTA
45716622 TATCCCATTG
Statistics
Matches: 46, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
16 9 0.20
17 32 0.70
18 5 0.11
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:45718194 original size:29 final size:29
Alignment explanation
Indices: 45718054--45718381 Score: 181
Period size: 29 Copynumber: 11.2 Consensus size: 29
45718044 CAAAAAGGGG
* *
45718054 ATTTTGGAAAATTCGAGGGTAAAATAGTA
1 ATTTTGGAAAGTTCGAGGGTAAAATGGTA
*
45718083 ATTTTTGGTTAAA--TCG-GTGTTAAAAATGG-A
1 A-TTTTGG--AAAGTTCGAG-GGT-AAAATGGTA
*
45718113 ATTTTGGAAAGTT-TAGGGGTAAAATGGTA
1 ATTTTGGAAAGTTCGA-GGGTAAAATGGTA
* *
45718142 ATTTTTAGTGAAA--TCAAGGTTAAACATGG-A
1 A-TTTT-G-GAAAGTTCGAGGGTAAA-ATGGTA
*
45718172 GTTTTGGAAAGTTCGAGGGTAAAATGGTA
1 ATTTTGGAAAGTTCGAGGGTAAAATGGTA
* *
45718201 ATTTTGGTGAAA--TCGAGGTTAAAAAATAG-A
1 ATTTT-G-GAAAGTTCGAGGGT--AAAATGGTA
*
45718231 ATTTTGGAAAGTTCGGGGGTAAAATGGTA
1 ATTTTGGAAAGTTCGAGGGTAAAATGGTA
45718260 ATTTTTGGTGAAA-TT-G-GGGTTAAAAATGG-A
1 A-TTTT-G-GAAAGTTCGAGGG-T-AAAATGGTA
*
45718290 ATTTTGGAAAGTTCGGGGGTAAAATGGTA
1 ATTTTGGAAAGTTCGAGGGTAAAATGGTA
*
45718319 ATTTTGGTGAAA-TT-G-GGGTTAAAAATAG-A
1 ATTTT-G-GAAAGTTCGAGGG-T-AAAATGGTA
* * *
45718348 ATTTTGGAAAGTTTGGGGGCAAAATGGTA
1 ATTTTGGAAAGTTCGAGGGTAAAATGGTA
45718377 ATTTT
1 ATTTT
45718382 TGGTGAAATT
Statistics
Matches: 239, Mismatches: 18, Indels: 84
0.70 0.05 0.25
Matches are distributed among these distances:
27 15 0.06
28 44 0.18
29 71 0.30
30 62 0.26
31 36 0.15
32 11 0.05
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (29 bp):
ATTTTGGAAAGTTCGAGGGTAAAATGGTA
Found at i:45718395 original size:29 final size:28
Alignment explanation
Indices: 45718010--45718395 Score: 122
Period size: 29 Copynumber: 13.1 Consensus size: 28
45718000 TAGACTCGCG
*
45718010 GGGGCAAAATGGTAATTTTTGGTGAAATT
1 GGGGAAAAATGGTAA-TTTTGGTGAAATT
** *
45718039 GGGGTCAAAAA-GGGGATTTTGG-AAAATT
1 GGGG--AAAAATGGTAATTTTGGTGAAATT
* * * *
45718067 CGAGGGTAAAATAGTAATTTTTGGTTAAATC
1 -G-GGGAAAAATGGTAA-TTTTGGTGAAATT
*
45718098 GGTGTTAAAAATGG-AATTTT-G-GAAAGTTT
1 GG-G-GAAAAATGGTAATTTTGGTGAAA--TT
* * *
45718127 AGGGGTAAAATGGTAATTTTTAGTGAAATCAA
1 -GGGGAAAAATGGTAA-TTTTGGTGAAAT--T
** * *
45718159 GGTTAAACATGG-AGTTTT-G-GAAAGTT
1 GGGGAAAAATGGTAATTTTGGTGAAA-TT
* *
45718185 CGAGGGTAAAATGGTAATTTTGGTGAAATC
1 -G-GGGAAAAATGGTAATTTTGGTGAAATT
* *
45718215 GAGGTTAAAAAATAG-AATTTT-G-GAAAGTT
1 G-GG--GAAAAATGGTAATTTTGGTGAAA-TT
*
45718244 CGGGGGTAAAATGGTAATTTTTGGTGAAATT
1 --GGGGAAAAATGGTAA-TTTTGGTGAAATT
45718275 GGGGTTAAAAATGG-AATTTT-G-GAAAGTT
1 GGGG--AAAAATGGTAATTTTGGTGAAA-TT
*
45718303 CGGGGGTAAAATGGTAATTTTGGTGAAATT
1 --GGGGAAAAATGGTAATTTTGGTGAAATT
*
45718333 GGGGTTAAAAATAG-AATTTT-G-GAAAGTTT
1 GGGG--AAAAATGGTAATTTTGGTGAAA--TT
*
45718362 GGGGGCAAAATGGTAATTTTTGGTGAAATT
1 -GGGGAAAAATGGTAA-TTTTGGTGAAATT
45718392 GGGG
1 GGGG
45718396 TTAAAAATAT
Statistics
Matches: 264, Mismatches: 43, Indels: 100
0.65 0.11 0.25
Matches are distributed among these distances:
27 16 0.06
28 57 0.22
29 67 0.25
30 63 0.24
31 49 0.19
32 12 0.05
ACGTcount: A:0.34, C:0.03, G:0.30, T:0.33
Consensus pattern (28 bp):
GGGGAAAAATGGTAATTTTGGTGAAATT
Found at i:45718418 original size:59 final size:59
Alignment explanation
Indices: 45718008--45718443 Score: 545
Period size: 59 Copynumber: 7.4 Consensus size: 59
45717998 TTTAGACTCG
* * * * *
45718008 CGGGGGCAAAATGGTAATTTTTGGTGAAATTGGGGTCAAAAAGGGGATTTTGGAAAATT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAAAGTT
* * * * *
45718067 CGAGGGTAAAATAGTAATTTTTGGTTAAATCGGTGTTAAAAATGGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAAAGTT
** * *** * *
45718126 TAGGGGTAAAATGGTAATTTTTAGTGAAATCAAGGTTAAACATGGAGTTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAAAGTT
* * * *
45718185 CGAGGGTAAAATGGTAA-TTTTGGTGAAATCGAGGTTAAAAAATAGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTT-AAAAATGGAATTTTGGAAAGTT
45718244 CGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAAAGTT
*
45718303 CGGGGGTAAAATGGTAA-TTTTGGTGAAATTGGGGTTAAAAATAGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAAAGTT
* * * ***
45718361 TGGGGGCAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATATG-ATTTCAAAAAGTT
1 CGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAAT-GGAATTTTGGAAAGTT
* * *
45718420 CAGGGGTAAAATAGTAATTCTTGG
1 CGGGGGTAAAATGGTAATTTTTGG
45718444 ATAGCCCAAG
Statistics
Matches: 328, Mismatches: 45, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
58 72 0.22
59 238 0.73
60 18 0.05
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (59 bp):
CGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTGGAAAGTT
Found at i:45718758 original size:161 final size:161
Alignment explanation
Indices: 45718584--45719092 Score: 869
Period size: 161 Copynumber: 3.2 Consensus size: 161
45718574 GAATTGATTT
* * **
45718584 AAGGAC-AAATTAAAACAAATTAAAAGTAAAAGGGACTAATTACACAAATAAGCTGAAATAGTGC
1 AAGGACTAAATTAAAACAAATTAAAAATAAAAGAGACTAATTACACAAATAAGCCAAAATAGTGC
* * * * * * *
45718648 CACATGGCAGCCTCTAGTGCATTTAAAATGTCAAAGGATTAAATTGAAAAGTAAACAAAATTAGT
66 CACGTGGCAGCCTCTGGTGCATTCAAAAAGTTAAAGGATCAAATTGAAAAGTAAACAAAATTACT
*
45718713 GGGCCAAATTAAAAATAAGTAAAAGTATGAA
131 GGGCCAAATTAAAAATAATTAAAAGTATGAA
*
45718744 AACGACTAAATTAAAACAAATTAAAAATAAAAGAGACTAATTACACAAATAAGCCAAAATAGTGC
1 AAGGACTAAATTAAAACAAATTAAAAATAAAAGAGACTAATTACACAAATAAGCCAAAATAGTGC
45718809 CACGTGGCAGCCTCTGGTGCATTCAAAAAGTTAAAGGATCAAATTGAAAAGTAAACAAAATTACT
66 CACGTGGCAGCCTCTGGTGCATTCAAAAAGTTAAAGGATCAAATTGAAAAGTAAACAAAATTACT
45718874 GGGCCAAATTAAAAATAATTAAAAGTATGAA
131 GGGCCAAATTAAAAATAATTAAAAGTATGAA
45718905 AAGGACTAAATTAAAACAAATTAAAAATAAAAGAGACTAATTACACAAATAAGCCAAAATAGTGC
1 AAGGACTAAATTAAAACAAATTAAAAATAAAAGAGACTAATTACACAAATAAGCCAAAATAGTGC
*
45718970 CACGTGGCAGCCTCTGGTGCATTCAAAAAGTTAAAGGATCAAATTGAAAAGTAAAAAAAATTACT
66 CACGTGGCAGCCTCTGGTGCATTCAAAAAGTTAAAGGATCAAATTGAAAAGTAAACAAAATTACT
45719035 GGGCCAAATTAAAAATAATTAAAAGTATGAA
131 GGGCCAAATTAAAAATAATTAAAAGTATGAA
*
45719066 AAGGACTAAATTAAAAC-AATAAAAAAT
1 AAGGACTAAATTAAAACAAATTAAAAAT
45719093 GCGGAAGGAC
Statistics
Matches: 332, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
160 14 0.04
161 318 0.96
ACGTcount: A:0.52, C:0.12, G:0.15, T:0.21
Consensus pattern (161 bp):
AAGGACTAAATTAAAACAAATTAAAAATAAAAGAGACTAATTACACAAATAAGCCAAAATAGTGC
CACGTGGCAGCCTCTGGTGCATTCAAAAAGTTAAAGGATCAAATTGAAAAGTAAACAAAATTACT
GGGCCAAATTAAAAATAATTAAAAGTATGAA
Found at i:45720662 original size:18 final size:17
Alignment explanation
Indices: 45720613--45720666 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
45720603 AATTATTTCG
*
45720613 AATTTAAACTAAATTTA
1 AATTTAAAATAAATTTA
*
45720630 AATTTAAAGTAAATTTA
1 AATTTAAAATAAATTTA
*
45720647 ATTTTAGAAATAAATTTA
1 AATTTA-AAATAAATTTA
45720665 AA
1 AA
45720667 AATCATTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 21 0.66
18 11 0.34
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.41
Consensus pattern (17 bp):
AATTTAAAATAAATTTA
Found at i:45721719 original size:2 final size:2
Alignment explanation
Indices: 45721676--45721702 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
45721666 ATAATAGGGG
45721676 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
45721703 TGGGAGAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:45727081 original size:20 final size:20
Alignment explanation
Indices: 45727052--45727097 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
45727042 AAAGGATGAG
*
45727052 AAGT-AAAAATTTTGGGGGAA
1 AAGTAAAAAATTTT-AGGGAA
45727072 AA-TAAAAAATTTTAGGGAA
1 AAGTAAAAAATTTTAGGGAA
45727091 AAGTAAA
1 AAGTAAA
45727098 TGGGAGAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.54, C:0.00, G:0.22, T:0.24
Consensus pattern (20 bp):
AAGTAAAAAATTTTAGGGAA
Found at i:45734922 original size:25 final size:25
Alignment explanation
Indices: 45734894--45734964 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 25
45734884 AATTTTCTCG
45734894 AAATTTTATAGGGGTAAAATCGTCA
1 AAATTTTATAGGGGTAAAATCGTCA
* * *
45734919 AAATTTTCACAGGGCTAAAATTGTCA
1 AAATTTT-ATAGGGGTAAAATCGTCA
45734945 AAATTTTACTA-GGGTAAAAT
1 AAATTTTA-TAGGGGTAAAAT
45734965 TGAGATGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
25 16 0.41
26 23 0.59
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (25 bp):
AAATTTTATAGGGGTAAAATCGTCA
Found at i:45736803 original size:46 final size:46
Alignment explanation
Indices: 45736733--45736823 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
45736723 CTTGCTAAGT
*
45736733 ATATATTTTAATATTTAAACTTTTACTTTATAAGTTAACATAAATA
1 ATATATTTTAATATTTAAACTTTTACTTTATAAGTTAACACAAATA
* * *
45736779 ATATATTTTAATCTTTAAATTTTTACTTTATAATTTAACACAAAT
1 ATATATTTTAATATTTAAACTTTTACTTTATAAGTTAACACAAAT
45736824 TGAAAATAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.42, C:0.08, G:0.01, T:0.49
Consensus pattern (46 bp):
ATATATTTTAATATTTAAACTTTTACTTTATAAGTTAACACAAATA
Found at i:45740492 original size:19 final size:19
Alignment explanation
Indices: 45740449--45740492 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
45740439 ATTTGATATC
*
45740449 AATTTTTTAAATAGTTTTT
1 AATTTTTTAAATAATTTTT
*
45740468 -ATTTTTTTAATAATTTTAT
1 AATTTTTTAAATAATTTT-T
45740487 AATTTT
1 AATTTT
45740493 AAAATTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 15 0.71
19 1 0.05
20 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
AATTTTTTAAATAATTTTT
Found at i:45741110 original size:21 final size:21
Alignment explanation
Indices: 45741084--45741125 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
45741074 CATTCTAAAT
45741084 AGAACAATTTGCCCTCACAAA
1 AGAACAATTTGCCCTCACAAA
*
45741105 AGAACAATTTGTCCTCACAAA
1 AGAACAATTTGCCCTCACAAA
45741126 GTTGTTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.21
Consensus pattern (21 bp):
AGAACAATTTGCCCTCACAAA
Found at i:45746008 original size:159 final size:159
Alignment explanation
Indices: 45745719--45746033 Score: 567
Period size: 159 Copynumber: 2.0 Consensus size: 159
45745709 AACACTATAA
* *
45745719 TACCTGTATTTCATGAGTTTTATGTAATATTTGTGCCATTTTATGAGAAATATTATCTTAATGAG
1 TACCTGTAGTTCATGAGTTTTATGTAATATTTATGCCATTTTATGAGAAATATTATCTTAATGAG
*
45745784 CTTGATCTGGATTTATTTGAGAATATTGATATAGAGGAAATCGTTAGATTCTTGAGAGAAGGTAG
66 CTTGATCTGGATTTATTTAAGAATATTGATATAGAGGAAATCGTTAGATTCTTGAGAGAAGGTAG
*
45745849 GGGTAGTTGAAATTATAAACTTGATGTAG
131 GGGTAGTTGAAATTATAAACCTGATGTAG
45745878 TACCTGTAGTTCATGAGTTTTATGTAATATTTATGCCATTTTATGAGAAATATTATCTTAATGAG
1 TACCTGTAGTTCATGAGTTTTATGTAATATTTATGCCATTTTATGAGAAATATTATCTTAATGAG
*
45745943 CTTGATCTGGATTTATTTAAGAATATTGATATAGAGGAAATCGTTAGATTCTTGAGAGAGGGTAG
66 CTTGATCTGGATTTATTTAAGAATATTGATATAGAGGAAATCGTTAGATTCTTGAGAGAAGGTAG
* *
45746008 GGGTAGTTGGAATTATAGACCTGATG
131 GGGTAGTTGAAATTATAAACCTGATG
45746034 ATGGCTCACC
Statistics
Matches: 149, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
159 149 1.00
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.39
Consensus pattern (159 bp):
TACCTGTAGTTCATGAGTTTTATGTAATATTTATGCCATTTTATGAGAAATATTATCTTAATGAG
CTTGATCTGGATTTATTTAAGAATATTGATATAGAGGAAATCGTTAGATTCTTGAGAGAAGGTAG
GGGTAGTTGAAATTATAAACCTGATGTAG
Found at i:45746616 original size:26 final size:23
Alignment explanation
Indices: 45746553--45746625 Score: 94
Period size: 24 Copynumber: 3.1 Consensus size: 23
45746543 GTATTGAAAG
45746553 AATTTAAATATCAATTTAAAAAA
1 AATTTAAATATCAATTTAAAAAA
* *
45746576 AA-TTAAGTATTAATTTGAGAAAAA
1 AATTTAAATATCAATTT-A-AAAAA
45746600 AATTATAAATATCAATTTAAAAAA
1 AATT-TAAATATCAATTTAAAAAA
45746624 AA
1 AA
45746626 GGATAAATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
22 12 0.29
23 3 0.07
24 14 0.33
25 2 0.05
26 11 0.26
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTTAAATATCAATTTAAAAAA
Found at i:45747550 original size:20 final size:21
Alignment explanation
Indices: 45747525--45747563 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
45747515 GGATGGGAAG
*
45747525 AAAGTAAAAGT-TTTGGAGGA
1 AAAGTAAAAATATTTGGAGGA
45747545 AAAGTAAAAATATTTGGAG
1 AAAGTAAAAATATTTGGAG
45747564 ATTTGGGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.26, T:0.26
Consensus pattern (21 bp):
AAAGTAAAAATATTTGGAGGA
Found at i:45751958 original size:43 final size:43
Alignment explanation
Indices: 45751911--45752136 Score: 231
Period size: 43 Copynumber: 5.3 Consensus size: 43
45751901 ATGATCTTTC
**
45751911 CCACAAACATCGCTAAAAAACATGGTCTTTAGCGGCGCTTTTA
1 CCACAAACGCCGCTAAAAAACATGGTCTTTAGCGGCGCTTTTA
* * *
45751954 CCACAAACGCCGCTAAAGAACATGGTCTTTAGCAGCGC-TTAA
1 CCACAAACGCCGCTAAAAAACATGGTCTTTAGCGGCGCTTTTA
* *
45751996 CCCACAAATGCCACTAAAAAACATGGTCTTTAGCGGCGCTTTTA
1 -CCACAAACGCCGCTAAAAAACATGGTCTTTAGCGGCGCTTTTA
* * * ** *
45752040 CCACAAACGCCGCTAAAGAACGTGGTTTTTAGCAACGCCTTT-
1 CCACAAACGCCGCTAAAAAACATGGTCTTTAGCGGCGCTTTTA
* * * * ** * *
45752082 CTCACAAACGCCGCTAAAGACCATGTTCTTTTGCAACACTTTTT
1 C-CACAAACGCCGCTAAAAAACATGGTCTTTAGCGGCGCTTTTA
45752126 CCACAAACGCC
1 CCACAAACGCC
45752137 ACTGACATTA
Statistics
Matches: 154, Mismatches: 25, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
42 4 0.03
43 146 0.95
44 4 0.03
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (43 bp):
CCACAAACGCCGCTAAAAAACATGGTCTTTAGCGGCGCTTTTA
Found at i:45752088 original size:86 final size:86
Alignment explanation
Indices: 45751923--45752136 Score: 277
Period size: 86 Copynumber: 2.5 Consensus size: 86
45751913 ACAAACATCG
45751923 CTAAAAAACATGGTCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAACATGGTCTTTAGCA
1 CTAAAAAACATGGTCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAACATGGTCTTTAGCA
* *
45751988 GCGCTTAACCCACAAATGCCA
66 ACGCTTAACCCACAAACGCCA
* *
45752009 CTAAAAAACATGGTCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAACGTGGTTTTTAGCA
1 CTAAAAAACATGGTCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAACATGGTCTTTAGCA
* * *
45752074 ACGCCTT-TCTCACAAACGCCG
66 ACG-CTTAACCCACAAACGCCA
* * * * ** * *
45752095 CTAAAGACCATGTTCTTTTGCAACACTTTTTCCACAAACGCC
1 CTAAAAAACATGGTCTTTAGCGGCGCTTTTACCACAAACGCC
45752137 ACTGACATTA
Statistics
Matches: 112, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
86 109 0.97
87 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (86 bp):
CTAAAAAACATGGTCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAACATGGTCTTTAGCA
ACGCTTAACCCACAAACGCCA
Found at i:45759828 original size:24 final size:24
Alignment explanation
Indices: 45759795--45759891 Score: 72
Period size: 24 Copynumber: 4.1 Consensus size: 24
45759785 GGGTAGGATT
*
45759795 TGTGTCTGCATTTGTATTTGAATA
1 TGTGTTTGCATTTGTATTTGAATA
* * * **
45759819 TGTGTTTGCATCTGTATCTAAACC
1 TGTGTTTGCATTTGTATTTGAATA
* *
45759843 TGTGTTTGCA-TTGTATATGAATT
1 TGTGTTTGCATTTGTATTTGAATA
* * *
45759866 TGTATATGCATCTT-TATTTGATTA
1 TGTGTTTGCAT-TTGTATTTGAATA
45759890 TG
1 TG
45759892 ATAATACATC
Statistics
Matches: 55, Mismatches: 16, Indels: 4
0.73 0.21 0.05
Matches are distributed among these distances:
23 16 0.29
24 37 0.67
25 2 0.04
ACGTcount: A:0.22, C:0.10, G:0.19, T:0.49
Consensus pattern (24 bp):
TGTGTTTGCATTTGTATTTGAATA
Found at i:45760868 original size:17 final size:17
Alignment explanation
Indices: 45760821--45760877 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
45760811 TTTTAAATTA
* *
45760821 AATTTATTTTGAATTTG
1 AATTTATTATAAATTTG
45760838 AATTTGCA-TA-AAATTTG
1 AATTT--ATTATAAATTTG
*
45760855 AATTTATTATAAATTTA
1 AATTTATTATAAATTTG
45760872 AATTTA
1 AATTTA
45760878 AAATTAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
15 1 0.03
16 2 0.06
17 28 0.85
18 1 0.03
19 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (17 bp):
AATTTATTATAAATTTG
Found at i:45762720 original size:162 final size:162
Alignment explanation
Indices: 45762483--45762812 Score: 624
Period size: 162 Copynumber: 2.0 Consensus size: 162
45762473 ACTTTTCAAT
*
45762483 TTAGTCCTTTGACTGTTTGACTGCACCAGAGGTTGCCACGTGTCACTTTTTGGCTTATTTATGTA
1 TTAGTCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCACTTTTTGGCTTATTTATGTA
45762548 TCTAGTCCCTGTCATTTTTAATTTGTTTTAATTTAATCCTTAAATCAACTTTTATTTAATTACAA
66 TCTAGTCCCTGTCATTTTTAATTTGTTTTAATTTAATCCTTAAATCAACTTTTATTTAATTACAA
45762613 AATTGGCCCAAGAATTTTTCAAGATTTATAAA
131 AATTGGCCCAAGAATTTTTCAAGATTTATAAA
*
45762645 TTAGTCCTTTGACTGTTTGATTGCACCAGAGGCTGCCACGTGTCACTTTTTGGCTTATTTATGTA
1 TTAGTCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCACTTTTTGGCTTATTTATGTA
45762710 TCTAGTCCCTGTCATTTTTAATTTGTTTTAATTTAATCCTTAAATCAACTTTTATTTAATTACAA
66 TCTAGTCCCTGTCATTTTTAATTTGTTTTAATTTAATCCTTAAATCAACTTTTATTTAATTACAA
* *
45762775 AATTGGCCCGAGATTTTTTCAAGATTTATAAA
131 AATTGGCCCAAGAATTTTTCAAGATTTATAAA
45762807 TTAGTC
1 TTAGTC
45762813 ATTTCACTTC
Statistics
Matches: 164, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 164 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (162 bp):
TTAGTCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCACTTTTTGGCTTATTTATGTA
TCTAGTCCCTGTCATTTTTAATTTGTTTTAATTTAATCCTTAAATCAACTTTTATTTAATTACAA
AATTGGCCCAAGAATTTTTCAAGATTTATAAA
Found at i:45762954 original size:59 final size:59
Alignment explanation
Indices: 45762891--45763306 Score: 556
Period size: 59 Copynumber: 7.1 Consensus size: 59
45762881 CCTGGACTGT
* *
45762891 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTACATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
*
45762950 CCAAAAATTACCATTTTA-CCCTCGAACTTTCCAAAATTCCATTTTTAA-CCCTAGTTTCA
1 CCAAAAATTACCATTTTACCCCT-GAACTTTCCAAAATTCCATTTTTAACCCCGA-TTTCA
* *
45763009 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATT-CATTTTTAACCCTGATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
** *
45763067 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * *
45763126 CCAAAAATTACCATTTTACCGCTAAACTTTCCAAAATCCCATTTTTAACCCAG-TTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * *
45763184 TCAAAAATTACCATTTT-CCCCCGAACTTTCCAAAA-TCCTATCTTTAACCCCGGTTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCC-ATTTTTAACCCCGATTTCA
* * * * * *
45763242 CCAAAAATCACCAATTTAGCCCTCGAACTTTCCAAAATTCCATTTTTAGCCCCGGTTTCG
1 CCAAAAATTACCATTTTACCCCT-GAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
45763302 CCAAA
1 CCAAA
45763307 GTTTCCAAAA
Statistics
Matches: 318, Mismatches: 29, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
56 2 0.01
57 26 0.08
58 99 0.31
59 151 0.47
60 37 0.12
61 3 0.01
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.33
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:45763078 original size:117 final size:118
Alignment explanation
Indices: 45762891--45763289 Score: 572
Period size: 117 Copynumber: 3.4 Consensus size: 118
45762881 CCTGGACTGT
* *
45762891 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTACATTTTTAACCCCGATTTCACCAAAA
1 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTACATTTTTAACCCAGATTTCACCAAAA
* *
45762956 ATTACCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAACCCTAGTTTCA
66 ATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCAGTTTCA
* *
45763009 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATT-CATTTTTAACCCTGATTTCACCAAAA
1 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTACATTTTTAACCCAGATTTCACCAAAA
* *
45763073 ATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
66 ATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCAGTTTCA
* * ** *
45763126 CCAAAAATTACCATTTTACCGCTAAACTTTCCAAAATCCCATTTTTAACCCAG-TTTCATCAAAA
1 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTACATTTTTAACCCAGATTTCACCAAAA
* *
45763190 ATTACCATTTT-CCCCCGAACTTTCCAAAA-TCCTATCTTTAACCCCGGTTTCA
66 ATTACCATTTTACCCCCGAACTTTCCAAAATTCC-ATTTTTAACCCCAGTTTCA
* * * * *
45763242 CCAAAAATCACCAATTTAGCCCTCGAACTTTCCAAAATTCCATTTTTA
1 CCAAAAATTACCATTTTA-CCCCCAAACTTTCCAAAATTACATTTTTA
45763290 GCCCCGGTTT
Statistics
Matches: 254, Mismatches: 24, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
115 3 0.01
116 49 0.19
117 153 0.60
118 49 0.19
ACGTcount: A:0.34, C:0.30, G:0.03, T:0.33
Consensus pattern (118 bp):
CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTACATTTTTAACCCAGATTTCACCAAAA
ATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCAGTTTCA
Found at i:45763273 original size:176 final size:176
Alignment explanation
Indices: 45762891--45763294 Score: 618
Period size: 176 Copynumber: 2.3 Consensus size: 176
45762881 CCTGGACTGT
* *
45762891 CCAAAAATTACCATTTTACCC-CTAAACTTTCCAAAATTACATTTTTAACCCCGATTTCACCAAA
1 CCAAAAATTACCATTTTACCCTC-AAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAA
* *
45762955 AATTACCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTAACCCTAGTTTCACCAAAAATTAC
65 AATTACCATTTTACCCTCAAACTTTCCAAAATCCCATTTTTAACCCTAGTTTCACCAAAAATTAC
* * *
45763020 CATTTTACCCCCGAACTTTCCAAAATTCATTTTTAACCCTGATTTCA
130 CATTTTACCCCCGAACTTTCCAAAATCCATCTTTAACCCCGATTTCA
*
45763067 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAA
1 CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAA
*
45763132 ATTACCATTTTACCGCT-AAACTTTCCAAAATCCCATTTTTAACCC-AGTTTCATCAAAAATTAC
66 ATTACCATTTTACC-CTCAAACTTTCCAAAATCCCATTTTTAACCCTAGTTTCACCAAAAATTAC
*
45763195 CATTTT-CCCCCGAACTTTCCAAAATCCTATCTTTAACCCCGGTTTCA
130 CATTTTACCCCCGAACTTTCCAAAATCC-ATCTTTAACCCCGATTTCA
* * * *
45763242 CCAAAAATCACCAATTTAGCCCTCGAACTTTCCAAAATTCCATTTTTAGCCCC
1 CCAAAAATTACCATTTTA-CCCTCAAACTTTCCAAAATTCCATTTTTAACCCC
45763295 GGTTTCGCCA
Statistics
Matches: 210, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
174 20 0.10
175 55 0.26
176 132 0.63
177 3 0.01
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.33
Consensus pattern (176 bp):
CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAA
ATTACCATTTTACCCTCAAACTTTCCAAAATCCCATTTTTAACCCTAGTTTCACCAAAAATTACC
ATTTTACCCCCGAACTTTCCAAAATCCATCTTTAACCCCGATTTCA
Found at i:45763344 original size:38 final size:38
Alignment explanation
Indices: 45763270--45763344 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
45763260 GCCCTCGAAC
* **
45763270 TTTCCAAAATTCCATTTTTAGCCCCGGTTTCGCCAAAG
1 TTTCCAAAATTCCATTTTTAACCCCGGTTTAACCAAAG
*
45763308 TTTCCAAAATTTCATTTTTAACCCCGAG-TTAACCAAA
1 TTTCCAAAATTCCATTTTTAACCCCG-GTTTAACCAAA
45763345 AATTACCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 31 0.97
39 1 0.03
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (38 bp):
TTTCCAAAATTCCATTTTTAACCCCGGTTTAACCAAAG
Found at i:45763378 original size:28 final size:28
Alignment explanation
Indices: 45763343--45763402 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
45763333 GAGTTAACCA
*
45763343 AAAATTACCATTTTGTCCCCGCGCATCC
1 AAAATTACCATTTTGCCCCCGCGCATCC
* *
45763371 AAAATTACCATTTTGCCCCCGGGTATCC
1 AAAATTACCATTTTGCCCCCGCGCATCC
45763399 AAAA
1 AAAA
45763403 GTCTCAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.32, G:0.12, T:0.27
Consensus pattern (28 bp):
AAAATTACCATTTTGCCCCCGCGCATCC
Found at i:45774509 original size:76 final size:76
Alignment explanation
Indices: 45774414--45775867 Score: 2586
Period size: 76 Copynumber: 19.0 Consensus size: 76
45774404 TCAGATCAAC
* *
45774414 CAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCCTTATATCTGAAA
1 CAACATCA-TTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAA
45774479 TTGAAGTAAGAG
65 TTGAAGTAAGAG
45774491 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAAACAAGTCTTTATCTCTGAAA
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGAT-AACAAGTCTTTATCTCTGAAA
45774556 TTGAAGTAAGAG
65 TTGAAGTAAGAG
*
45774568 CAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAAACAAGTCTTTATCTCTGAAA
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGAT-AACAAGTCTTTATCTCTGAAA
45774633 TTGAAGTAAGAG
65 TTGAAGTAAGAG
* *
45774645 CAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTTTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45774710 TGAAGTAAGAG
66 TGAAGTAAGAG
*
45774721 CAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45774786 TGAAGTAAGAG
66 TGAAGTAAGAG
* *
45774797 CAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTCAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45774862 TGAAGTAAGAG
66 TGAAGTAAGAG
* *
45774873 CAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGATGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45774938 TGAAGTAAGAG
66 TGAAGTAAGAG
45774949 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45775014 TGAAGTAAGAG
66 TGAAGTAAGAG
* *
45775025 CAAGATCATTTCCTATCCTTTTGAAATTGAAGTAGAGTTGGATAAACAAGTCTTTATCTCTGAAA
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGAT-AACAAGTCTTTATCTCTGAAA
45775090 TTGAAGTAAGAG
65 TTGAAGTAAGAG
* *
45775102 CAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAAACAAGTCTTTATCTTTGAAA
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGAT-AACAAGTCTTTATCTCTGAAA
45775167 TTGAAGTAAGAG
65 TTGAAGTAAGAG
45775179 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45775244 TGAAGTAAGAG
66 TGAAGTAAGAG
* *
45775255 CAACGTCATTTCCTATCCTCTTGAAATTAAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45775320 TGAAGTAAGAG
66 TGAAGTAAGAG
* *
45775331 CAAGATCATTTCCTATCCTCTTGAAATTAAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
*
45775396 TGAAGTAAGAA
66 TGAAGTAAGAG
* *
45775407 CAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGATGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45775472 TGAAGTAAGAG
66 TGAAGTAAGAG
* *
45775483 CAACGTCATTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45775548 TGAAGTAAGAG
66 TGAAGTAAGAG
45775559 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45775624 TGAAGTAAGAG
66 TGAAGTAAGAG
*
45775635 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAATCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45775700 TGAAGTAAGAG
66 TGAAGTAAGAG
45775711 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45775776 TGAAGTAAGAG
66 TGAAGTAAGAG
* * *
45775787 CAAGATCATTTCCTATCCTCTTGAAATTGAAG-AAAGTTGGATAGCAAGTCTTTATCTCTCTGAA
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTA--TCTCTG-A
45775851 AATTGAAGTAAGAG
63 AATTGAAGTAAGAG
45775865 CAA
1 CAA
45775868 GATGAAGCCT
Statistics
Matches: 1333, Mismatches: 39, Indels: 9
0.97 0.03 0.01
Matches are distributed among these distances:
75 20 0.02
76 983 0.74
77 312 0.23
78 18 0.01
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (76 bp):
CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
TGAAGTAAGAG
Found at i:45775431 original size:534 final size:534
Alignment explanation
Indices: 45774414--45775870 Score: 2688
Period size: 534 Copynumber: 2.7 Consensus size: 534
45774404 TCAGATCAAC
* *
45774414 CAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCCTTATATCTGAAA
1 CAACATCA-TTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAA
45774479 TTGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAAACAAGTCT
65 TTGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAAACAAGTCT
45774544 TTATCTCTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGG
130 TTATCTCTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGG
*
45774609 ATAAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTG
195 ATAAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTG
*
45774674 AAGTAGAGTTGGATAACAAGTCTTTATCTTTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCC
260 AAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCC
45774739 TCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAAGATC
325 TCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAAGATC
*
45774804 ATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTCAAATTGAAGTA
390 ATTTCCTATCCTCTTGAAATTAAAGTAGAGTTGGATAACAAGTCTTTATCTCTCAAATTGAAGTA
*
45774869 AGAGCAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGATGGATAACAAGTCTTTATCTCTG
455 AGAACAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGATGGATAACAAGTCTTTATCTCTG
45774934 AAATTGAAGTAAGAG
520 AAATTGAAGTAAGAG
45774949 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
* *
45775014 TGAAGTAAGAGCAAGATCATTTCCTATCCTTTTGAAATTGAAGTAGAGTTGGATAAACAAGTCTT
66 TGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAAACAAGTCTT
45775079 TATCTCTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGA
131 TATCTCTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGA
*
45775144 TAAACAAGTCTTTATCTTTGAAATTGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGA
196 TAAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGA
45775209 AGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCCT
261 AGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCCT
*
45775274 CTTGAAATTAAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAAGATCA
326 CTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAAGATCA
*
45775339 TTTCCTATCCTCTTGAAATTAAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAA
391 TTTCCTATCCTCTTGAAATTAAAGTAGAGTTGGATAACAAGTCTTTATCTCTCAAATTGAAGTAA
45775404 GAACAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGATGGATAACAAGTCTTTATCTCTGA
456 GAACAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGATGGATAACAAGTCTTTATCTCTGA
45775469 AATTGAAGTAAGAG
521 AATTGAAGTAAGAG
* *
45775483 CAACGTCATTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTCTTTATCTCTGAAAT
1 CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
45775548 TGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGAT-AACAAGTCTT
66 TGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAAACAAGTCTT
*
45775612 TATCTCTGAAATTGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGA
131 TATCTCTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGA
*
45775677 T-AACAAATCTTTATCTCTGAAATTGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGA
196 TAAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGA
45775741 AGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAA-GATCATTTCCTATCC
261 AGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAACG-TCATTTCCTATCC
* *
45775805 TCTTGAAATTGAAG-AAAGTTGGATAGCAAGTCTTTATCTCTCTGAAAATTGAAGTAAGAGCAAG
325 TCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTA--TCTCTG-AAATTGAAGTAAGAGCAAG
45775869 AT
387 AT
45775871 GAAGCCTCGA
Statistics
Matches: 897, Mismatches: 21, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
531 21 0.02
532 136 0.15
533 81 0.09
534 651 0.73
535 8 0.01
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (534 bp):
CAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAAT
TGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAAACAAGTCTT
TATCTCTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGA
TAAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAACATCATTTCCTATCCTCTTGAAATTGA
AGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAACGTCATTTCCTATCCT
CTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAAGATCA
TTTCCTATCCTCTTGAAATTAAAGTAGAGTTGGATAACAAGTCTTTATCTCTCAAATTGAAGTAA
GAACAAGATCATTTCCTATCCTCTTGAAATTGAAGTAGAGATGGATAACAAGTCTTTATCTCTGA
AATTGAAGTAAGAG
Found at i:45776196 original size:17 final size:17
Alignment explanation
Indices: 45776149--45776205 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
45776139 TTTTAAATTA
* *
45776149 AATTTATTTTGAATTTG
1 AATTTATTATAAATTTG
45776166 AATTTGCA-TA-AAATTTG
1 AATTT--ATTATAAATTTG
*
45776183 AATTTATTATAAATTTA
1 AATTTATTATAAATTTG
45776200 AATTTA
1 AATTTA
45776206 AAATTAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
15 1 0.03
16 2 0.06
17 28 0.85
18 1 0.03
19 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (17 bp):
AATTTATTATAAATTTG
Found at i:45778058 original size:162 final size:162
Alignment explanation
Indices: 45777821--45778158 Score: 595
Period size: 162 Copynumber: 2.1 Consensus size: 162
45777811 ACTTTTCAAT
* * * *
45777821 TTAGTCTTTTGACTGTTTGACCGCACCAGAGGTTGCCACGTGTCACTTTTTGGCTTATTTATGTA
1 TTAGTCCTTTGACTGTTTGACCGCACCAGAGGCTACCACGTGTCACTTTTTAGCTTATTTATGTA
*
45777886 TCTAGTCCCTGTCATTTTTAATTTATTTTAATTTAATCCTTAAATCAACTTTTATTTAATTATAA
66 TCTAGTCCCTGTCATTTTTAATTTATTTTAATTTAATCCTTAAATCAACTTTTATTTAATTACAA
45777951 AATTGGCCCAAGAATTTTTCAAGATTTATAAA
131 AATTGGCCCAAGAATTTTTCAAGATTTATAAA
**
45777983 TTAGTCCTTTGACTGTTTGATTGCACCAGAGGCTACCACGTGTCACTTTTTAGCTTATTTATGTA
1 TTAGTCCTTTGACTGTTTGACCGCACCAGAGGCTACCACGTGTCACTTTTTAGCTTATTTATGTA
*
45778048 TCTAGTCCCTGTCATTTTTAATTTGTTTTAATTTAATCCTTAAATCAACTTTTATTTAATTACAA
66 TCTAGTCCCTGTCATTTTTAATTTATTTTAATTTAATCCTTAAATCAACTTTTATTTAATTACAA
*
45778113 AATTGGCCCGAGAATTTTTCAAGATTTATAAA
131 AATTGGCCCAAGAATTTTTCAAGATTTATAAA
45778145 TTAGTCCTTTGACT
1 TTAGTCCTTTGACT
45778159 TCTGGGTACC
Statistics
Matches: 167, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
162 167 1.00
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (162 bp):
TTAGTCCTTTGACTGTTTGACCGCACCAGAGGCTACCACGTGTCACTTTTTAGCTTATTTATGTA
TCTAGTCCCTGTCATTTTTAATTTATTTTAATTTAATCCTTAAATCAACTTTTATTTAATTACAA
AATTGGCCCAAGAATTTTTCAAGATTTATAAA
Found at i:45778292 original size:59 final size:59
Alignment explanation
Indices: 45778229--45778600 Score: 512
Period size: 59 Copynumber: 6.3 Consensus size: 59
45778219 CCTGAACTGT
**
45778229 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCTGGATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
45778288 CCAAAAACTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
** *** *
45778347 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTTTGTTTTTAACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
45778406 CCAAAAATCACCATTTTACTCCTAAACTTTCCAAAATTCCATTTTTAACCCCGGTTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
45778465 TCAAAAATTACCATTTTACCCCTAAACTTTCCAAAA-TCCTATCTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCC-ATTTTTAACCCCGATTTCA
* * * * * *
45778524 CCAAAAATCACCATTTTACCTCTCGAACTTTCCAAAATTCCATTTTTAACCTCGGTTTAA
1 CCAAAAATTACCATTTTACCCCT-AAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
45778584 CCAAAAATTACCATTTT
1 CCAAAAATTACCATTTT
45778601 GCCCTCGTGC
Statistics
Matches: 277, Mismatches: 33, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
58 3 0.01
59 227 0.82
60 44 0.16
61 3 0.01
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.35
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:45778304 original size:31 final size:30
Alignment explanation
Indices: 45778261--45778363 Score: 88
Period size: 31 Copynumber: 3.4 Consensus size: 30
45778251 TAAACTTTCC
* *
45778261 AAAATTCCATTTTTAACCTGGATTTCACCA
1 AAAATACCATTTTTAACCTGAATTTCACCA
*
45778291 AAAACTACCA-TTTTACCCCTGAACTTT--CC-
1 AAAA-TACCATTTTTA-ACCTGAA-TTTCACCA
* **
45778320 AAAATTCCATTTTTAACCCCAATTTCACCA
1 AAAATACCATTTTTAACCTGAATTTCACCA
45778350 AAAATTACCATTTT
1 AAAA-TACCATTTT
45778364 ACCCCCGAAC
Statistics
Matches: 57, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
27 3 0.05
28 8 0.14
29 11 0.19
30 15 0.26
31 17 0.30
32 3 0.05
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (30 bp):
AAAATACCATTTTTAACCTGAATTTCACCA
Found at i:45778643 original size:28 final size:28
Alignment explanation
Indices: 45778587--45778645 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
45778577 GGTTTAACCA
* * *
45778587 AAAATTACCATTTTGCCCTCGTGCGTCC
1 AAAATTACCATTTTGCCCCCGGGCATCC
*
45778615 AAAATTACCATTTTGCCCCCGGGTATCC
1 AAAATTACCATTTTGCCCCCGGGCATCC
45778643 AAA
1 AAA
45778646 GTCCCGTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.29
Consensus pattern (28 bp):
AAAATTACCATTTTGCCCCCGGGCATCC
Found at i:45780823 original size:34 final size:34
Alignment explanation
Indices: 45780780--45780848 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
45780770 TTCAAAACAT
*
45780780 TTTAATTAATCAAAAATGGCTTTGGTCTTTGAAA
1 TTTAATTAATCAAAAATGACTTTGGTCTTTGAAA
45780814 TTTAATTAATCAAAAATGACTTTGGTCTTTGAAA
1 TTTAATTAATCAAAAATGACTTTGGTCTTTGAAA
45780848 T
1 T
45780849 CTAGAAAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (34 bp):
TTTAATTAATCAAAAATGACTTTGGTCTTTGAAA
Found at i:45783859 original size:115 final size:115
Alignment explanation
Indices: 45783650--45783859 Score: 296
Period size: 115 Copynumber: 1.8 Consensus size: 115
45783640 ATTTTTTTTA
* * *
45783650 ACCCACTTCTCTGTACCTCACCAGGAAGATGAGATTTGCAGTTTCACTCCACCCCATTGTATCCT
1 ACCCACTTCCCTGTACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACCCCACTGTATCCT
* * * * * *
45783715 TAAGGACATTGAGCTTGGCTTCGTTGTTTTTGATTCAACATACTGTTTGG
66 CAAGGACATCGAGATTGACTTCATCGTTTTTGATTCAACATACTGTTTGG
* * *
45783765 ACCCACTTCCCTGTACCTCACCAGGAAGATGGGATTTGAAGTTTCACTCTACTCCACTGTATCCT
1 ACCCACTTCCCTGTACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACCCCACTGTATCCT
45783830 CAAGGACATCGAGATCT-ACTTCATCGTTTT
66 CAAGGACATCGAGAT-TGACTTCATCGTTTT
45783860 AATTCGACCC
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
115 81 0.99
116 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (115 bp):
ACCCACTTCCCTGTACCTCACCAGGAAGATGAGATTTGAAGTTTCACTCCACCCCACTGTATCCT
CAAGGACATCGAGATTGACTTCATCGTTTTTGATTCAACATACTGTTTGG
Found at i:45783965 original size:203 final size:204
Alignment explanation
Indices: 45783742--45784152 Score: 599
Period size: 203 Copynumber: 2.0 Consensus size: 204
45783732 GCTTCGTTGT
* * * * *
45783742 TTTTGATTCAACATACTGTTTGGACCCACTTCCCTGTACCTCACCAGGAAGATGGGATTTGAAGT
1 TTTTGATTCAACACACTGTTTGCACCCACTTCCCTATACCTCACCAAGAAGATGAGATTTGAAGT
* * *
45783807 TTCACTCTACTCCACTGTATCCTCAAGGACATCGAGATCTACTTCATCGTTTTAATTCGACCCAT
66 TTCACTCCACTCCACTGTATCCTCAAGGACATCGAGATCTACTTCATCATTTTAATTCGACCCAC
** * * *
45783872 TGTAACTCA-GGGTATAAGATTTGGTACTTCACTCCACTCCACTGTAACCTCAAGGACGTTGAGA
131 TACAACTCAGGGGTATAAGATTTGGTACTTCACTCCACTACACTATAACCTCAAGAACGTTGAGA
45783936 TCCGCTTTG
196 TCCGCTTTG
* *
45783945 TTTTGATTCAACACACTGTTTGCACCCACTTCTCTATACCTCCCCAAGAAGATGAGATTTGAAGT
1 TTTTGATTCAACACACTGTTTGCACCCACTTCCCTATACCTCACCAAGAAGATGAGATTTGAAGT
* ** * * *
45784010 TTCTCTCCACTCCACTGTATCCTCAAGGATGTTGAGATCTACTTCGTTATTTTAATTCGACCCAC
66 TTCACTCCACTCCACTGTATCCTCAAGGACATCGAGATCTACTTCATCATTTTAATTCGACCCAC
* *
45784075 TACAACTCAGGGGTATAGGATTTGGTACTTCACTCCACTATACTATAACCTCAAGAACGTTGAGA
131 TACAACTCAGGGGTATAAGATTTGGTACTTCACTCCACTACACTATAACCTCAAGAACGTTGAGA
*
45784140 TCTGCTTTG
196 TCCGCTTTG
45784149 TTTT
1 TTTT
45784153 AACCCATTTC
Statistics
Matches: 183, Mismatches: 24, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
203 121 0.66
204 62 0.34
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (204 bp):
TTTTGATTCAACACACTGTTTGCACCCACTTCCCTATACCTCACCAAGAAGATGAGATTTGAAGT
TTCACTCCACTCCACTGTATCCTCAAGGACATCGAGATCTACTTCATCATTTTAATTCGACCCAC
TACAACTCAGGGGTATAAGATTTGGTACTTCACTCCACTACACTATAACCTCAAGAACGTTGAGA
TCCGCTTTG
Found at i:45784666 original size:49 final size:49
Alignment explanation
Indices: 45784613--45784787 Score: 113
Period size: 49 Copynumber: 3.6 Consensus size: 49
45784603 ACGTTTCTAA
*
45784613 GGTACCAGGTTCGCCGTTACGGCCTCAACTTTTTCTTTTATATTTTCAT
1 GGTACCAGATTCGCCGTTACGGCCTCAACTTTTTCTTTTATATTTTCAT
* *** * * * * * *
45784662 GGTACTAGATTCGTTATTGCGGCCT-AAATCTTTC--TCATCACGTTTCTAA
1 GGTACCAGATTCGCCGTTACGGCCTCAACTTTTTCTTTTAT-A-TTTTC-AT
* * * * * * *
45784711 GTTACCAGGTTCGTCGTTGCTGCCTCAACCTTTCCTTTTATATTTTCAT
1 GGTACCAGATTCGCCGTTACGGCCTCAACTTTTTCTTTTATATTTTCAT
* * *
45784760 GGTACCAAATTCACTGTTACGGCCTCAA
1 GGTACCAGATTCGCCGTTACGGCCTCAA
45784788 TCCTTCCCAA
Statistics
Matches: 88, Mismatches: 32, Indels: 12
0.67 0.24 0.09
Matches are distributed among these distances:
46 3 0.03
47 1 0.01
48 11 0.12
49 60 0.68
50 9 0.10
51 1 0.01
52 3 0.03
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.39
Consensus pattern (49 bp):
GGTACCAGATTCGCCGTTACGGCCTCAACTTTTTCTTTTATATTTTCAT
Found at i:45784692 original size:98 final size:98
Alignment explanation
Indices: 45784373--45785154 Score: 662
Period size: 98 Copynumber: 7.9 Consensus size: 98
45784363 TTAGGGAATA
* * * * * * * * * * *
45784373 AGATTCACCATTGCGACTTCAATCTTTCTCGTCATGTTTCTAAGGTACTAGGTTTGCCATTGCAG
1 AGATTCGCCGTTGCGGCCTCAATCTTTCCCATCACGTTTCTAAGGTACCAGGTTCGCCGTTGCGG
*
45784438 CCTCAACCTTTCCCTTTATATTTCCATGGTACT
66 CCTCAACCTTTCCCTTTATATTTTCATGGTACT
* * * * * * * * * *
45784471 AGATCCGTCGTTGTGGCCTCGATCCTTCCCCTCACATTTTCTAAAGG-ACAAGGTTTGTCGTTGC
1 AGATTCGCCGTTGCGGCCTCAATCTTTCCCATCAC-GTTTCT-AAGGTACCAGGTTCGCCGTTGC
* * *
45784535 GACCTCAACCTTTCCCTTTATATTTCCATGGTGCT
64 GGCCTCAACCTTTCCCTTTATATTTTCATGGTACT
* * * * * *
45784570 AAATTTGCCATTACGGCTTCAATCTTTCCCATCACGTTTCTAAGGTACCAGGTTCGCCGTTACGG
1 AGATTCGCCGTTGCGGCCTCAATCTTTCCCATCACGTTTCTAAGGTACCAGGTTCGCCGTTGCGG
* * *
45784635 CCTCAACTTTTTCTTTTATATTTTCATGGTACT
66 CCTCAACCTTTCCCTTTATATTTTCATGGTACT
*** * * * * *
45784668 AGATTCGTTATTGCGGCCTAAATCTTTCTCATCACGTTTCTAAGTTACCAGGTTCGTCGTTGCTG
1 AGATTCGCCGTTGCGGCCTCAATCTTTCCCATCACGTTTCTAAGGTACCAGGTTCGCCGTTGCGG
* *
45784733 CCTCAACCTTTCCTTTTATATTTTCATGGTACC
66 CCTCAACCTTTCCCTTTATATTTTCATGGTACT
* * * * * * * * * * *
45784766 AAATTCACTGTTACGGCCTCAATCCTTCCCAAT-ACATCTTCTACGATA-TAGGGTTTGCCTTTG
1 AGATTCGCCGTTGCGGCCTCAATCTTTCCC-ATCACGT-TTCTAAGGTACCA-GGTTCGCCGTTG
* * **
45784829 CGACCTCCACCTTTCCCTTTATA-TCCCTATGGTACT
63 CGGCCTCAACCTTTCCCTTTATATTTTC-ATGGTACT
* * * *** * ** * * ** **
45784865 AGATCCACCATTGCAATCTCGATCTTTTGCATCACGTCTT-TAAGGTACAAAGTTCATCGTTGTA
1 AGATTCGCCGTTGCGGCCTCAATCTTTCCCATCACGT-TTCTAAGGTACCAGGTTCGCCGTTGCG
45784929 GCCTCAACCTTTCCCTTTATATCTTT-ATGGTA-T
65 GCCTCAACCTTTCCCTTTATAT-TTTCATGGTACT
* * * * *
45784962 CAGATTCGTCGTTGCGACCTCAATCCTTCCCATCACATCTTCTAAGGTA-CAGGTTTTGCCGTTG
1 -AGATTCGCCGTTGCGGCCTCAATCTTTCCCATCACGT-TTCTAAGGTACCAGG-TTCGCCGTTG
*
45785026 CGGCCTCAACCTTTCCTTTTATATTTTCATGGTACT
63 CGGCCTCAACCTTTCCCTTTATATTTTCATGGTACT
*
45785062 AGATTCGCCGTTGTGGCCTCAATCTTTCCCATCACGTTTCTAAGGTACCAGGTTCGCCGTTGCGG
1 AGATTCGCCGTTGCGGCCTCAATCTTTCCCATCACGTTTCTAAGGTACCAGGTTCGCCGTTGCGG
* *
45785127 CCTCAACCTCTCCTTTTATATTTTCATG
66 CCTCAACCTTTCCCTTTATATTTTCATG
45785155 TTTCCCCTAT
Statistics
Matches: 536, Mismatches: 131, Indels: 34
0.76 0.19 0.05
Matches are distributed among these distances:
97 5 0.01
98 303 0.57
99 222 0.41
100 6 0.01
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (98 bp):
AGATTCGCCGTTGCGGCCTCAATCTTTCCCATCACGTTTCTAAGGTACCAGGTTCGCCGTTGCGG
CCTCAACCTTTCCCTTTATATTTTCATGGTACT
Found at i:45784935 original size:197 final size:195
Alignment explanation
Indices: 45784410--45785154 Score: 551
Period size: 197 Copynumber: 3.8 Consensus size: 195
45784400 CTCGTCATGT
* * *
45784410 TTCTAAGGTACTA-GGTTTGCCATTGC-AGCCTCAACCTTTCCCTTTATAT-TTCCATGGTACTA
1 TTCTAAGATAC-AGGGTTTGCCGTTGCGA-CCTCAACCTTTCCCTTTATATCCT-CATGGTACTA
** * *** * ** * * * * *
45784472 GATCCGTCGTTGTGGCCTCGATCCTTCCCCTCACATTTTCTAAAGG-ACAAGGTTTGTCGTTGCG
63 GATCCACCATTGCAACCTCAAT-CTTTTCATCAC-GTTTCT-AAGGTACCAGGTTCGTCGTTGTG
* * * * * * * * *
45784536 ACCTCAACCTTTCCCTTTATATTTCCATGGTGCTAAATTTGC-CATTACGGCTTCAATCTTTCCC
125 -CCTCAACCTTTCCTTTTATATTTTCATGGTACCAAA-TTCCTCGTTACGACCTCAATCCTTCCC
*
45784600 ATCACGT-
188 ATCACATC
* * * * * * * **
45784607 TTCTAAGGTACCA-GGTTCGCCGTTACGGCCTCAACTTTTTCTTTTATATTTTCATGGTACTAGA
1 TTCTAAGATA-CAGGGTTTGCCGTTGCGACCTCAACCTTTCCCTTTATATCCTCATGGTACTAGA
* *** ** * *
45784671 TTCGTTATTGCGGCCTAAATCTTTCTCATCACGTTTCTAAGTTACCAGGTTCGTCGTTGCTGCCT
65 TCCACCATTGCAACCTCAATCTTT-TCATCACGTTTCTAAGGTACCAGGTTCGTCGTTG-TGCCT
*
45784736 CAACCTTTCCTTTTATATTTTCATGGTACCAAATTCACT-GTTACGGCCTCAATCCTTCCCAAT-
128 CAACCTTTCCTTTTATATTTTCATGGTACCAAATTC-CTCGTTACGACCTCAATCCTTCCC-ATC
45784799 ACATC
191 ACATC
* * * *
45784804 TTCTACGATATAGGGTTTGCCTTTGCGACCTCCACCTTTCCCTTTATATCC-CTATGGTACTAGA
1 TTCTAAGATACAGGGTTTGCCGTTGCGACCTCAACCTTTCCCTTTATATCCTC-ATGGTACTAGA
* * * * *
45784868 TCCACCATTGCAATCTCGATCTTTTGCATCACGTCTT-TAAGGTACAAAGTTCATCGTTGTAGCC
65 TCCACCATTGCAACCTCAATCTTTT-CATCACGT-TTCTAAGGTACCAGGTTCGTCGTTGT-GCC
* * * * *
45784932 TCAACCTTTCCCTTTATATCTTT-ATGGTATCAGATTCGTCGTTGCGACCTCAATCCTTCCCATC
127 TCAACCTTTCCTTTTATAT-TTTCATGGTACCAAATTCCTCGTTACGACCTCAATCCTTCCCATC
45784996 ACATC
191 ACATC
* * * * **
45785001 TTCTAAGGTACAGGTTTTGCCGTTGCGGCCTCAACCTTTCCTTTTATATTTTCATGGTACTAGAT
1 TTCTAAGATACAGGGTTTGCCGTTGCGACCTCAACCTTTCCCTTTATATCCTCATGGTACTAGAT
* * * *** * * *
45785066 TCGCCGTTGTGGCCTCAATCTTTCCCATCACGTTTCTAAGGTACCAGGTTCGCCGTTGCGGCCTC
66 CCACCATTGCAACCTCAATCTTT-TCATCACGTTTCTAAGGTACCAGGTTCGTCGTTG-TGCCTC
*
45785131 AACCTCTCCTTTTATATTTTCATG
129 AACCTTTCCTTTTATATTTTCATG
45785155 TTTCCCCTAT
Statistics
Matches: 437, Mismatches: 88, Indels: 46
0.77 0.15 0.08
Matches are distributed among these distances:
195 5 0.01
196 88 0.20
197 335 0.77
198 9 0.02
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (195 bp):
TTCTAAGATACAGGGTTTGCCGTTGCGACCTCAACCTTTCCCTTTATATCCTCATGGTACTAGAT
CCACCATTGCAACCTCAATCTTTTCATCACGTTTCTAAGGTACCAGGTTCGTCGTTGTGCCTCAA
CCTTTCCTTTTATATTTTCATGGTACCAAATTCCTCGTTACGACCTCAATCCTTCCCATCACATC
Found at i:45784983 original size:49 final size:48
Alignment explanation
Indices: 45784929--45785147 Score: 174
Period size: 49 Copynumber: 4.5 Consensus size: 48
45784919 CATCGTTGTA
*
45784929 GCCTCAACCTTTCCCTTTATATCTTTATGGTATCAGATTCGTCGTTGCG
1 GCCTCAACCTTTCCCTTTATATCTTTATGGTA-CAGATTCGCCGTTGCG
* * * * * * *
45784978 ACCTCAATCC-TTCCCATCACATCTTCTAAGGTACAGGTTTTGCCGTTGCG
1 GCCTCAA-CCTTTCCCTTTATATCTT-TATGGTACA-GATTCGCCGTTGCG
* *
45785028 GCCTCAACCTTTCCTTTTATAT-TTTCATGGTACTAGATTCGCCGTTGTG
1 GCCTCAACCTTTCCCTTTATATCTTT-ATGGTAC-AGATTCGCCGTTGCG
* * * ** * *
45785077 GCCTCAATCTTTCCCATCACGT-TTCTAAGGTACCAGGTTCGCCGTTGCG
1 GCCTCAACCTTTCCCTTTATATCTT-TATGGTA-CAGATTCGCCGTTGCG
* *
45785126 GCCTCAACCTCTCCTTTTATAT
1 GCCTCAACCTTTCCCTTTATAT
45785148 TTTCATGTTT
Statistics
Matches: 129, Mismatches: 33, Indels: 16
0.72 0.19 0.09
Matches are distributed among these distances:
48 1 0.01
49 92 0.71
50 36 0.28
ACGTcount: A:0.17, C:0.30, G:0.16, T:0.37
Consensus pattern (48 bp):
GCCTCAACCTTTCCCTTTATATCTTTATGGTACAGATTCGCCGTTGCG
Found at i:45786106 original size:11 final size:11
Alignment explanation
Indices: 45786090--45786130 Score: 50
Period size: 10 Copynumber: 3.8 Consensus size: 11
45786080 TCGACCTCTT
45786090 TTTTTTTTTGC
1 TTTTTTTTTGC
*
45786101 -TTTTTTGT-C
1 TTTTTTTTTGC
45786110 TTTTTTTTTGC
1 TTTTTTTTTGC
45786121 TTTTTCTTTT
1 TTTTT-TTTT
45786131 TTTCGGGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
9 1 0.04
10 14 0.56
11 6 0.24
12 4 0.16
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.83
Consensus pattern (11 bp):
TTTTTTTTTGC
Found at i:45786133 original size:20 final size:20
Alignment explanation
Indices: 45786088--45786125 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
45786078 CCTCGACCTC
45786088 TTTTTTTTTTTGCTTTTTTG
1 TTTTTTTTTTTGCTTTTTTG
*
45786108 TCTTTTTTTTTGCTTTTT
1 TTTTTTTTTTTGCTTTTT
45786126 CTTTTTTTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (20 bp):
TTTTTTTTTTTGCTTTTTTG
Found at i:45793529 original size:203 final size:204
Alignment explanation
Indices: 45793225--45793637 Score: 578
Period size: 203 Copynumber: 2.0 Consensus size: 204
45793215 GCTTCATTGT
* * * * *
45793225 TTTTGATTCAACACACTTTTTGCACCCACTTCTCTGTACCTCACCAGGAAGATGGGATTTGAAGT
1 TTTTGATTCAACACACTGTTTGCACCCACTTCTCTATACCTCACCAAGAAAATGAGATTTGAAGT
* * * * **
45793290 TTCACTTCACTCCACTGTATCCTTAGGGACGTTGAGATCTACTTCGTTATTTTAATCCGATTCAC
66 TTCACTCCACTCCACTGTATCCTCAGCGACGTTGAGATCTACTTCGTCATTTTAATCCGACCCAC
* * **
45793355 TGTAACTC-AGGGCATAAGATTTGGTACTTCACTCCACTCCACTGTAACCTCAAGGATGTTGAGA
131 TGCAACTCAAAGGCATAAGATTTGGTACTTCACTCCACTCCACTGTAACCTCAAGGACATTGAGA
45793419 TCCGCTTTG
196 TCCGCTTTG
**
45793428 TTTTGATTCAGTACACTGTTTGCACCCACTTCTCTATACCTC-CCTAAGAAAATGAGATTTGAAG
1 TTTTGATTCAACACACTGTTTGCACCCACTTCTCTATACCTCACC-AAGAAAATGAGATTTGAAG
* * * *
45793492 TTTCTCTCCACTCCACTGTATCCTCAGCGATGTTGAGATCTACTTCGTCGTTTTAATCTGACCCA
65 TTTCACTCCACTCCACTGTATCCTCAGCGACGTTGAGATCTACTTCGTCATTTTAATCCGACCCA
* * *
45793557 CTGCAACTCAAAGGTATAGGATTTGGTACTTCACTCCACTCCACTGTAACCTCAGGGACATTGAG
130 CTGCAACTCAAAGGCATAAGATTTGGTACTTCACTCCACTCCACTGTAACCTCAAGGACATTGAG
*
45793622 ATCTGCTTTG
195 ATCCGCTTTG
45793632 TTTTGA
1 TTTTGA
45793638 CCCATTTCTT
Statistics
Matches: 183, Mismatches: 25, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
202 2 0.01
203 117 0.64
204 64 0.35
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (204 bp):
TTTTGATTCAACACACTGTTTGCACCCACTTCTCTATACCTCACCAAGAAAATGAGATTTGAAGT
TTCACTCCACTCCACTGTATCCTCAGCGACGTTGAGATCTACTTCGTCATTTTAATCCGACCCAC
TGCAACTCAAAGGCATAAGATTTGGTACTTCACTCCACTCCACTGTAACCTCAAGGACATTGAGA
TCCGCTTTG
Found at i:45794169 original size:98 final size:97
Alignment explanation
Indices: 45793875--45794636 Score: 699
Period size: 98 Copynumber: 7.8 Consensus size: 97
45793865 GTTACAGTTC
* * ** * * * *
45793875 CAATCTTTCCCGTCATGTTTCTAAAATTCTAGGTTCGGCGTTGCGACCTTAACCTTTCCCTTTAT
1 CAATCTTTCCCATCACGTTTCTAAGGTAC-AGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTAT
* * * *
45793940 ATTTCCATGGTACTAGATCCGCCGTTGTGGCCT
65 ATTTTCATGGTACTAGATTCGTCGTTGCGGCCT
* * * * ** * *
45793973 CGATCTTTCCCTTCACATTTTCTAAAGG-ACAAGGTTTGTTGTTGCGACCTTAACCTTTCCCTTT
1 CAATCTTTCCCATCAC-GTTTCT-AAGGTAC-AGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTT
* * * * * **
45794037 ATATTTCCATGGTACTAAATTTGCCATTATGGCCT
63 ATATTTTCATGGTACTAGATTCGTCGTTGCGGCCT
* * *
45794072 CAATCTTTTCCATCACGTTTCTAAGGTATCAGGTTCGCCGTTACGGCCTCAACCTTTTCCTTTAT
1 CAATCTTTCCCATCACGTTTCTAAGGTA-CAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTAT
*
45794137 ATTTTCATGGTACTAGATTCGTCGTTACGGCCT
65 ATTTTCATGGTACTAGATTCGTCGTTGCGGCCT
* * *
45794170 CAATCTTTCCCATCATGTTTCTAAGGTACCAGGTTCGCTGTTGCAGCCTCAACCTTTCCCTTTAT
1 CAATCTTTCCCATCACGTTTCTAAGGTA-CAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTAT
* * * *
45794235 A-TTTCAGTGGTACTAGATTCATCATTACGGCCA
65 ATTTTCA-TGGTACTAGATTCGTCGTTGCGGCCT
* * * * *
45794268 CAATCCTTCCCATCACATCTTCTAAGGTACAGGGTTCGTCATTGCGGCCTCCACCTTTCCCTTTA
1 CAATCTTTCCCATCACGT-TTCTAAGGTACA-GGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTA
* * * ***
45794333 TA-TCTCTATGGTACTAGA-TCTTCCATTGCAATCT
64 TATTTTC-ATGGTACTAGATTCGT-CGTTGCGGCCT
* *** * * * *
45794367 CGATCTTTTGTATCACGTCTT-TAAGGTACAAGGTTCGCTGTTGCAGCCTCAATCTTTTCCTTTA
1 CAATCTTTCCCATCACGT-TTCTAAGGTAC-AGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTA
* ** * *
45794431 TA-TCTCTATGGTACCGGATTCATCGTTGCGACCT
64 TATTTTC-ATGGTACTAGATTCGTCGTTGCGGCCT
* * * * *
45794465 CAATCCTTCCCATCACATCTTCTAAGGTACAGGTTCGTCGTTGCGACCTCAACCTTTCCTTTTAT
1 CAATCTTTCCCATCACGT-TTCTAAGGTACAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTAT
45794530 ATTTTCATGGTACTAGATTCGTCGTTGCGGCCT
65 ATTTTCATGGTACTAGATTCGTCGTTGCGGCCT
* * * *
45794563 CAATCTTTCCCATCTCGTTTCTAAGGTACCAAGTTCACCGTTGCGGCCTCAACCTTTCCCTTTTT
1 CAATCTTTCCCATCACGTTTCTAAGGTA-CAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTAT
45794628 ATTTTCATG
65 ATTTTCATG
45794637 TTTTCTCTGT
Statistics
Matches: 546, Mismatches: 104, Indels: 28
0.81 0.15 0.04
Matches are distributed among these distances:
97 19 0.03
98 355 0.65
99 169 0.31
100 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (97 bp):
CAATCTTTCCCATCACGTTTCTAAGGTACAGGTTCGCCGTTGCGGCCTCAACCTTTCCCTTTATA
TTTTCATGGTACTAGATTCGTCGTTGCGGCCT
Found at i:45794247 original size:49 final size:48
Alignment explanation
Indices: 45793925--45794247 Score: 155
Period size: 49 Copynumber: 6.6 Consensus size: 48
45793915 TTGCGACCTT
* * * * **
45793925 AACCTTTCCCTTTATATTTCCATGGTACTAGATCCGCCGTTGTGGCCTC
1 AACCTTTCCCTTTATATTT-CATGGTACCAGGTTCGCTGTTACGGCCTC
* * * * * * * * * * *
45793974 GATCTTTCCCTTCACATTTTCTAAAGG-ACAAGGTTTGTTGTTGCGACCTT
1 AACCTTTCCCTTTATA-TTTC--ATGGTACCAGGTTCGCTGTTACGGCCTC
* ** * ** *
45794024 AACCTTTCCCTTTATATTTCCATGGTACTAAATTTGCCATTATGGCCTC
1 AACCTTTCCCTTTATATTT-CATGGTACCAGGTTCGCTGTTACGGCCTC
* * * * ** * * *
45794073 AATCTTTTCCATCACGTTTCTAAGGTATCAGGTTCGCCGTTACGGCCTC
1 AACCTTTCCCTTTATATTTC-ATGGTACCAGGTTCGCTGTTACGGCCTC
* * *
45794122 AACCTTTTCCTTTATATTTTCATGGTACTAGATTCG-TCGTTACGGCCTC
1 AACCTTTCCCTTTATA-TTTCATGGTACCAGGTTCGCT-GTTACGGCCTC
* * * * * * *
45794171 AATCTTTCCCATCATGTTTCTAAGGTACCAGGTTCGCTGTTGCAGCCTC
1 AACCTTTCCCTTTATATTTC-ATGGTACCAGGTTCGCTGTTACGGCCTC
45794220 AACCTTTCCCTTTATATTTCAGTGGTAC
1 AACCTTTCCCTTTATATTTCA-TGGTAC
45794248 TAGATTCATC
Statistics
Matches: 195, Mismatches: 68, Indels: 22
0.68 0.24 0.08
Matches are distributed among these distances:
48 9 0.05
49 148 0.76
50 35 0.18
51 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.39
Consensus pattern (48 bp):
AACCTTTCCCTTTATATTTCATGGTACCAGGTTCGCTGTTACGGCCTC
Found at i:45794347 original size:295 final size:292
Alignment explanation
Indices: 45793856--45794625 Score: 822
Period size: 295 Copynumber: 2.6 Consensus size: 292
45793846 TTAGGGTATA
** * ** * *
45793856 AGATTCATCGTTAC-AGTTCCAATCTTTCCCGTCATGTTTCTAAAATTCTAGGTTCGGC-GTTGC
1 AGATTCATCGTTACGACCT-CAATCTTTCCCATCATGTTTCTAAGGTACCAGGTTC-GCTGTTGC
* * * * *
45793919 GACCTTAACCTTTCCCTTTATATTTCCATGGTACTAGATCCGCCGTTGTGGCCTCGATCTTTCCC
64 GACCTCAACCTTTCCCTTTATATTT-CATGGTACTAGATTCGTCGTTGCGGCCTCAATCTTTCCC
* * * * * *
45793984 TTCACATTTTCTAAAGG-ACAAGGTTTGTTGTTGCGACCTTAACCTTTCCCTTTATATTTCCATG
128 ATCACA-TTTCT-AAGGTAC-AGGTTCGTCGTTGCGGCCTCAACCTTTCCCTTTATATCTCCATG
***
45794048 GTACTAAAT-TTGCCATTATGGCCTCAATCTTTTCCATCACGT-TTCTAAGGTATC-AGGTTCGC
190 GTACTAAATCTT-CCATTACAACCTCAATCTTTTCCATCACGTCTT-TAAGGTA-CAAGGTTCGC
* * *
45794110 CGTTACGGCCTCAACCTTTTCCTTTATAT-TTTCATGGTACT
252 CGTTACAGCCTCAACCTTTTCCTTTATATCTCT-ATGGTACC
* *
45794151 AGATTCGTCGTTACGGCCTCAATCTTTCCCATCATGTTTCTAAGGTACCAGGTTCGCTGTTGC-A
1 AGATTCATCGTTACGACCTCAATCTTTCCCATCATGTTTCTAAGGTACCAGGTTCGCTGTTGCGA
* * * * *
45794215 GCCTCAACCTTTCCCTTTATATTTCAGTGGTACTAGATTCATCATTACGGCCACAATCCTTCCCA
66 -CCTCAACCTTTCCCTTTATATTTCA-TGGTACTAGATTCGTCGTTGCGGCCTCAATCTTTCCCA
* * *
45794280 TCACATCTTCTAAGGTACAGGGTTCGTCATTGCGGCCTCCACCTTTCCCTTTATATCTCTATGGT
129 TCACAT-TTCTAAGGTACA-GGTTCGTCGTTGCGGCCTCAACCTTTCCCTTTATATCTCCATGGT
* * * * ** * *
45794345 ACTAGATCTTCCATTGCAATCTCGATCTTTTGTATCACGTCTTTAAGGTACAAGGTTCGCTGTTG
192 ACTAAATCTTCCATTACAACCTCAATCTTTTCCATCACGTCTTTAAGGTACAAGGTTCGCCGTTA
*
45794410 CAGCCTCAATCTTTTCCTTTATATCTCTATGGTACC
257 CAGCCTCAACCTTTTCCTTTATATCTCTATGGTACC
* * * **
45794446 GGATTCATCGTTGCGACCTCAATCCTTCCCATCACATCTTCTAAGGTA-CAGGTTCG-TCGTTGC
1 AGATTCATCGTTACGACCTCAATCTTTCCCATCATGT-TTCTAAGGTACCAGGTTCGCT-GTTGC
*
45794509 GACCTCAACCTTTCCTTTTATATTTTCATGGTACTAGATTCGTCGTTGCGGCCTCAATCTTTCCC
64 GACCTCAACCTTTCCCTTTATA-TTTCATGGTACTAGATTCGTCGTTGCGGCCTCAATCTTTCCC
* * * **
45794574 ATCTCGTTTCTAAGGTACCAAGTTCACCGTTGCGGCCTCAACCTTTCCCTTT
128 ATCACATTTCTAAGGTA-CAGGTTCGTCGTTGCGGCCTCAACCTTTCCCTTT
45794626 TTATTTTCAT
Statistics
Matches: 396, Mismatches: 63, Indels: 33
0.80 0.13 0.07
Matches are distributed among these distances:
294 50 0.13
295 323 0.82
296 23 0.06
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (292 bp):
AGATTCATCGTTACGACCTCAATCTTTCCCATCATGTTTCTAAGGTACCAGGTTCGCTGTTGCGA
CCTCAACCTTTCCCTTTATATTTCATGGTACTAGATTCGTCGTTGCGGCCTCAATCTTTCCCATC
ACATTTCTAAGGTACAGGTTCGTCGTTGCGGCCTCAACCTTTCCCTTTATATCTCCATGGTACTA
AATCTTCCATTACAACCTCAATCTTTTCCATCACGTCTTTAAGGTACAAGGTTCGCCGTTACAGC
CTCAACCTTTTCCTTTATATCTCTATGGTACC
Found at i:45794591 original size:49 final size:49
Alignment explanation
Indices: 45794067--45794622 Score: 196
Period size: 49 Copynumber: 11.3 Consensus size: 49
45794057 TTGCCATTAT
* * * * * *
45794067 GGCCTCAATCTTTTCCATCACGTTTCTAAGGTA-TCAGGTTCGCCGTTAC
1 GGCCTCAATCTTTCCCATCTCATTTCTAAGGTACT-AGATTCGTCGTTGC
* * * * * *
45794116 GGCCTCAACCTTTTCC-T-TTATATTTTCATGGTACTAGATTCGTCGTTAC
1 GGCCTCAATCTTTCCCATCTCAT-TTCT-AAGGTACTAGATTCGTCGTTGC
* * *
45794165 GGCCTCAATCTTTCCCATCAT-GTTTCTAAGGTACCAGGTTCG-CTGTTGC
1 GGCCTCAATCTTTCCCATC-TCATTTCTAAGGTACTAGATTCGTC-GTTGC
* * * * * * * *
45794214 AGCCTCAACCTTTCCC-TTTATATTTC-AGTGGTACTAGATTCATCATTAC
1 GGCCTCAATCTTTCCCATCT-CATTTCTA-AGGTACTAGATTCGTCGTTGC
* * * * *
45794263 GGCCACAATCCTTCCCATCACATCTTCTAAGGTAC-AGGGTTCGTCATTGC
1 GGCCTCAATCTTTCCCATCTCAT-TTCTAAGGTACTA-GATTCGTCGTTGC
* * * * * *
45794313 GGCCTCCACCTTTCCC-T-TTATATCTCTATGGTACTAGA-TCTTCCATTGC
1 GGCCTCAATCTTTCCCATCTCAT-T-TCTAAGGTACTAGATTCGT-CGTTGC
*** * *** * * * *
45794362 AATCTCGATCTTTTGTATCACGTCTT-TAAGGTACAAGGTTCG-CTGTTGC
1 GGCCTCAATCTTTCCCATCTCAT-TTCTAAGGTACTAGATTCGTC-GTTGC
* * * * ** *
45794411 AGCCTCAATCTTTTCC-T-TTATATCTCTATGGTACCGGATTCATCGTTGC
1 GGCCTCAATCTTTCCCATCTCAT-T-TCTAAGGTACTAGATTCGTCGTTGC
* * * *
45794460 GACCTCAATCCTTCCCATCACATCTTCTAAGGTAC-AGGTTCGTCGTTGC
1 GGCCTCAATCTTTCCCATCTCAT-TTCTAAGGTACTAGATTCGTCGTTGC
* * * * * *
45794509 GACCTCAACCTTT-CC-TTTTATATTTTCATGGTACTAGATTCGTCGTTGC
1 GGCCTCAATCTTTCCCATCTCAT-TTCT-AAGGTACTAGATTCGTCGTTGC
* * **
45794558 GGCCTCAATCTTTCCCATCTCGTTTCTAAGGTACCA-AGTTCACCGTTGC
1 GGCCTCAATCTTTCCCATCTCATTTCTAAGGTACTAGA-TTCGTCGTTGC
*
45794607 GGCCTCAACCTTTCCC
1 GGCCTCAATCTTTCCC
45794623 TTTTTATTTT
Statistics
Matches: 366, Mismatches: 109, Indels: 64
0.68 0.20 0.12
Matches are distributed among these distances:
47 10 0.03
48 25 0.07
49 262 0.72
50 58 0.16
51 10 0.03
52 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.36
Consensus pattern (49 bp):
GGCCTCAATCTTTCCCATCTCATTTCTAAGGTACTAGATTCGTCGTTGC
Found at i:45795609 original size:15 final size:14
Alignment explanation
Indices: 45795575--45795623 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 14
45795565 CCTCGACCTC
45795575 TCTTTTTT--TTTT
1 TCTTTTTTGCTTTT
*
45795587 GCTTTTTTGTCGTTTT
1 TCTTTTTTG-C-TTTT
45795603 T-TTTTTTGCTTTT
1 TCTTTTTTGCTTTT
45795616 TCTTTTTT
1 TCTTTTTT
45795624 TCGGGTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
12 7 0.23
13 5 0.17
14 7 0.23
15 7 0.23
16 4 0.13
ACGTcount: A:0.00, C:0.10, G:0.08, T:0.82
Consensus pattern (14 bp):
TCTTTTTTGCTTTT
Found at i:45801403 original size:18 final size:16
Alignment explanation
Indices: 45801372--45801406 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
45801362 TTCGACCCCG
45801372 CTTTTTTAATTTTTTT
1 CTTTTTTAATTTTTTT
45801388 CTTTTTTATATATTTTTT
1 CTTTTTTA-AT-TTTTTT
45801406 C
1 C
45801407 AAAGTTTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 2 0.12
18 7 0.41
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (16 bp):
CTTTTTTAATTTTTTT
Found at i:45801999 original size:20 final size:21
Alignment explanation
Indices: 45801974--45802018 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
45801964 ATCAAACACT
45801974 AAAAAAT-ATCACGATTTTT-A
1 AAAAAATCA-CACGATTTTTCA
*
45801994 AAAAAATCACACTATTTTTCA
1 AAAAAATCACACGATTTTTCA
45802015 AAAA
1 AAAA
45802019 TTAATTTTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAAAATCACACGATTTTTCA
Found at i:45812171 original size:23 final size:23
Alignment explanation
Indices: 45812141--45812188 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
45812131 TGACTACTGG
*
45812141 ATTAGTATGTATCAGATCGAAAA
1 ATTAGTATGTATCAGATCAAAAA
*
45812164 ATTAGTATTTATCAGATCAAAAA
1 ATTAGTATGTATCAGATCAAAAA
45812187 AT
1 AT
45812189 GTTAGATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.33
Consensus pattern (23 bp):
ATTAGTATGTATCAGATCAAAAA
Found at i:45814072 original size:20 final size:20
Alignment explanation
Indices: 45814049--45814106 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
45814039 GTTCCTGAAT
45814049 CACCGGCACAAAGCCTGATA
1 CACCGGCACAAAGCCTGATA
*
45814069 CACCGGTACAAAGCCTGATA
1 CACCGGCACAAAGCCTGATA
*
45814089 CACCGGCATAAAGCCTGA
1 CACCGGCACAAAGCCTGA
45814107 AACATAGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.34, C:0.33, G:0.21, T:0.12
Consensus pattern (20 bp):
CACCGGCACAAAGCCTGATA
Found at i:45814258 original size:21 final size:24
Alignment explanation
Indices: 45814232--45814277 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
45814222 TTATAATTTC
45814232 ACTT-AATA-AAT-AAATGAACTT
1 ACTTAAATATAATAAAATGAACTT
45814253 ACTTAAAATATAATAAAATGAACTT
1 ACTT-AAATATAATAAAATGAACTT
45814278 GATATGCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
23 4 0.19
24 3 0.14
25 10 0.48
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (24 bp):
ACTTAAATATAATAAAATGAACTT
Found at i:45814494 original size:2 final size:2
Alignment explanation
Indices: 45814487--45814527 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
45814477 TAACTATTTT
45814487 TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45814527 T
1 T
45814528 CACATATTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.05
2 35 0.95
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:45814511 original size:19 final size:19
Alignment explanation
Indices: 45814487--45814527 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
45814477 TAACTATTTT
45814487 TATATATATATATATATAA
1 TATATATATATATATATAA
45814506 TATATATATATATATATAA
1 TATATATATATATATATAA
45814525 TAT
1 TAT
45814528 CACATATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TATATATATATATATATAA
Found at i:45814527 original size:17 final size:17
Alignment explanation
Indices: 45814488--45814521 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
45814478 AACTATTTTT
45814488 ATATATATATATATATA
1 ATATATATATATATATA
45814505 ATATATATATATATATA
1 ATATATATATATATATA
45814522 TAATATCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATATATATATATA
Found at i:45821691 original size:26 final size:27
Alignment explanation
Indices: 45821635--45821693 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
45821625 TAGAATTGCA
45821635 CCCA-AAATTGTCACTACATGACGATG
1 CCCAGAAATTGTCACTACATGACGATG
*
45821661 TCCAGAAA-TGTCACTACATGA-GCATG
1 CCCAGAAATTGTCACTACATGACG-ATG
45821687 CCCAGAA
1 CCCAGAA
45821694 TTATCGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 1 0.03
26 25 0.86
27 3 0.10
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (27 bp):
CCCAGAAATTGTCACTACATGACGATG
Found at i:45821703 original size:26 final size:26
Alignment explanation
Indices: 45821645--45821704 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
45821635 CCCAAAATTG
* *
45821645 TCACTACATGACGATGTCCAGAAATG
1 TCACTACATGACGATGCCCAGAAATA
*
45821671 TCACTACATGA-GCATGCCCAGAATTA
1 TCACTACATGACG-ATGCCCAGAAATA
*
45821697 TCGCTACA
1 TCACTACA
45821705 GGAACTCGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.03
26 28 0.97
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (26 bp):
TCACTACATGACGATGCCCAGAAATA
Found at i:45831338 original size:15 final size:15
Alignment explanation
Indices: 45831305--45831355 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
45831295 GTTCTGTTTC
*
45831305 TTCCTTCTTTTATTCTT
1 TTCCATCTTTT-TT-TT
45831322 TTCCATCTTTTTTTT
1 TTCCATCTTTTTTTT
45831337 TT-CATTCTTTTTCTTT
1 TTCCA-TCTTTTT-TTT
45831353 TTC
1 TTC
45831356 TTCATCCTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 2 0.07
15 11 0.37
16 7 0.23
17 10 0.33
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.73
Consensus pattern (15 bp):
TTCCATCTTTTTTTT
Found at i:45831353 original size:16 final size:15
Alignment explanation
Indices: 45831317--45831355 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
45831307 CCTTCTTTTA
*
45831317 TTCTTTTCCATCTTT
1 TTCTTTTTCATCTTT
45831332 TT-TTTTTCATTCTTT
1 TTCTTTTTCA-TCTTT
45831347 TTCTTTTTC
1 TTCTTTTTC
45831356 TTCATCCTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 6 0.29
15 9 0.43
16 6 0.29
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (15 bp):
TTCTTTTTCATCTTT
Found at i:45841061 original size:19 final size:20
Alignment explanation
Indices: 45841037--45841074 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
45841027 ACCCGAGTGT
*
45841037 TTTTATTTTTAT-TTATTTA
1 TTTTATTTTCATATTATTTA
45841056 TTTTATTTTCATATTATTT
1 TTTTATTTTCATATTATTT
45841075 TAAAAAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTATTTTCATATTATTTA
Found at i:45841152 original size:11 final size:11
Alignment explanation
Indices: 45841114--45841153 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
45841104 TTTATTACTT
*
45841114 AAAAAATTGAA
1 AAAAAATTAAA
*
45841125 AAAAAATTACA
1 AAAAAATTAAA
*
45841136 AGAAAATTAAA
1 AAAAAATTAAA
45841147 AAAAAAT
1 AAAAAAT
45841154 GGTTCACATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (11 bp):
AAAAAATTAAA
Found at i:45841780 original size:26 final size:26
Alignment explanation
Indices: 45841750--45841828 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 26
45841740 TATTGGTGTA
45841750 TATTTGTTTGAACATTGAGGGTGATG
1 TATTTGTTTGAACATTGAGGGTGATG
* * * *
45841776 TATTT-CTT--A-AGTGTGGG-GAGG
1 TATTTGTTTGAACATTGAGGGTGATG
45841797 TTATTTGTTTGAACATTGAGGGTGATG
1 -TATTTGTTTGAACATTGAGGGTGATG
45841824 TATTT
1 TATTT
45841829 CTTAAGTGCG
Statistics
Matches: 39, Mismatches: 8, Indels: 12
0.66 0.14 0.20
Matches are distributed among these distances:
21 3 0.08
22 11 0.28
23 3 0.08
25 3 0.08
26 16 0.41
27 3 0.08
ACGTcount: A:0.22, C:0.04, G:0.30, T:0.44
Consensus pattern (26 bp):
TATTTGTTTGAACATTGAGGGTGATG
Found at i:45841804 original size:48 final size:48
Alignment explanation
Indices: 45841750--45841850 Score: 193
Period size: 48 Copynumber: 2.1 Consensus size: 48
45841740 TATTGGTGTA
*
45841750 TATTTGTTTGAACATTGAGGGTGATGTATTTCTTAAGTGTGGGGAGGT
1 TATTTGTTTGAACATTGAGGGTGATGTATTTCTTAAGTGCGGGGAGGT
45841798 TATTTGTTTGAACATTGAGGGTGATGTATTTCTTAAGTGCGGGGAGGT
1 TATTTGTTTGAACATTGAGGGTGATGTATTTCTTAAGTGCGGGGAGGT
45841846 TATTT
1 TATTT
45841851 ATATGCTTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.21, C:0.05, G:0.32, T:0.43
Consensus pattern (48 bp):
TATTTGTTTGAACATTGAGGGTGATGTATTTCTTAAGTGCGGGGAGGT
Found at i:45845826 original size:7 final size:8
Alignment explanation
Indices: 45845804--45845833 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
45845794 TCACACCAGT
45845804 ATAATAAAA
1 ATAA-AAAA
45845813 ATAAAAAA
1 ATAAAAAA
45845821 ATAAAAAA
1 ATAAAAAA
45845829 ATAAA
1 ATAAA
45845834 TTTGACTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (8 bp):
ATAAAAAA
Found at i:45846987 original size:31 final size:34
Alignment explanation
Indices: 45846952--45847031 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 34
45846942 ATTATAGATT
*
45846952 TAAAATACAAGGGCCAAA-T-TAAAAATAAA-AA
1 TAAAATACAAAGGCCAAATTATAAAAATAAATAA
45846983 TAAAATGA-AAAGGCCAAATTGATAAAAATAAATAA
1 TAAAAT-ACAAAGGCCAAATT-ATAAAAATAAATAA
45847018 TACAAATACCAAAG
1 TA-AAATA-CAAAG
45847032 TTATAATTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
31 15 0.38
32 2 0.05
34 10 0.25
35 5 0.12
36 4 0.10
37 4 0.10
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.17
Consensus pattern (34 bp):
TAAAATACAAAGGCCAAATTATAAAAATAAATAA
Found at i:45848015 original size:95 final size:95
Alignment explanation
Indices: 45847818--45848015 Score: 202
Period size: 95 Copynumber: 2.1 Consensus size: 95
45847808 GATTGACATT
* * * * *
45847818 AACATTATTATCAATATGAGAGGACGTGAATTCGAATGTGCTTATACGCATTATCCTTCTATTTA
1 AACATTATCATCAATATAAGAGGACATAAATTCGAATGTGCTTATACGCATTATCCTCCTATTTA
* * * * * * *
45847883 TGATATGGGGAGGAGCTATGATTAGTTCTA
66 TAAGATAGAGAGGAGCTATGAATAATTATA
** * * * *
45847913 AGTATTATCCTCAATATAAGAGGATATAAATTCGAATGTG-TTGATGCGCATTATTCTCCTATTT
1 AACATTATCATCAATATAAGAGGACATAAATTCGAATGTGCTT-ATACGCATTATCCTCCTATTT
45847977 ATAAGATAGAGAGG-GACTATGAATAATTATA
65 ATAAGATAGAGAGGAG-CTATGAATAATTATA
45848008 AACATTAT
1 AACATTAT
45848016 AATTGTAGAG
Statistics
Matches: 81, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
94 3 0.04
95 78 0.96
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (95 bp):
AACATTATCATCAATATAAGAGGACATAAATTCGAATGTGCTTATACGCATTATCCTCCTATTTA
TAAGATAGAGAGGAGCTATGAATAATTATA
Found at i:45849158 original size:31 final size:32
Alignment explanation
Indices: 45849120--45849182 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 32
45849110 GCTTTTGGCA
45849120 CACTTCAACCCAATTTA-AGTAAAAATTAAGT
1 CACTTCAACCCAATTTATAGTAAAAATTAAGT
**
45849151 CACTTCAACCTTATTTATAGTAAAAATTAAGT
1 CACTTCAACCCAATTTATAGTAAAAATTAAGT
45849183 GAATGTTGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.33
Consensus pattern (32 bp):
CACTTCAACCCAATTTATAGTAAAAATTAAGT
Found at i:45854103 original size:60 final size:61
Alignment explanation
Indices: 45854021--45854168 Score: 167
Period size: 60 Copynumber: 2.4 Consensus size: 61
45854011 ACATTTGATA
* ** *
45854021 ACTCACTATGACACAGAA-TCATCGGAC-TTTAAATTTATAATAAGATTCATT-TCATTTAAT
1 ACTCACGATGACACA-AAGTCATCGGACATTT-AATCCATAATAAGATTCATTCTCATTCAAT
* * * * *
45854081 ACTCGCGATGACACAAAGTCATCGGACATTTAATCCGTAGTAGGATTCTTTCTCATTCAAT
1 ACTCACGATGACACAAAGTCATCGGACATTTAATCCATAATAAGATTCATTCTCATTCAAT
*
45854142 ACTCACGATGACTCAAAGTCATCGGAC
1 ACTCACGATGACACAAAGTCATCGGAC
45854169 CTGTTTGTAT
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
59 2 0.03
60 36 0.49
61 36 0.49
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31
Consensus pattern (61 bp):
ACTCACGATGACACAAAGTCATCGGACATTTAATCCATAATAAGATTCATTCTCATTCAAT
Found at i:45859268 original size:12 final size:12
Alignment explanation
Indices: 45859251--45859275 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45859241 TAATAGAATC
45859251 AGAAGAAGGAGA
1 AGAAGAAGGAGA
45859263 AGAAGAAGGAGA
1 AGAAGAAGGAGA
45859275 A
1 A
45859276 ATCGTTAGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (12 bp):
AGAAGAAGGAGA
Found at i:45867324 original size:19 final size:20
Alignment explanation
Indices: 45867296--45867334 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
45867286 AGAAAAATGG
* *
45867296 GAAAATTAAAGAGA-TGAAA
1 GAAAAATAAAAAGATTGAAA
45867315 GAAAAATAAAAAGATTGAAA
1 GAAAAATAAAAAGATTGAAA
45867335 AATATAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.15
Consensus pattern (20 bp):
GAAAAATAAAAAGATTGAAA
Found at i:45871481 original size:12 final size:12
Alignment explanation
Indices: 45871446--45871515 Score: 74
Period size: 12 Copynumber: 6.0 Consensus size: 12
45871436 GTTCACGAAC
*
45871446 AAGCTCGTTTAA
1 AAGCTCGTTTAT
*
45871458 AAGCTCATTTAT
1 AAGCTCGTTTAT
45871470 AAGCTCGTTTATT
1 AAGCTCGTTTA-T
45871483 AA-CTCGTTTAT
1 AAGCTCGTTTAT
*
45871494 -GGCTCGTTTAT
1 AAGCTCGTTTAT
*
45871505 -GGCTCGTTTAT
1 AAGCTCGTTTAT
45871516 TTATTAATGA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
11 21 0.40
12 28 0.54
13 3 0.06
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (12 bp):
AAGCTCGTTTAT
Found at i:45871501 original size:11 final size:11
Alignment explanation
Indices: 45871485--45871515 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
45871475 CGTTTATTAA
45871485 CTCGTTTATGG
1 CTCGTTTATGG
45871496 CTCGTTTATGG
1 CTCGTTTATGG
45871507 CTCGTTTAT
1 CTCGTTTAT
45871516 TTATTAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.10, C:0.19, G:0.23, T:0.48
Consensus pattern (11 bp):
CTCGTTTATGG
Found at i:45871644 original size:12 final size:12
Alignment explanation
Indices: 45871629--45871716 Score: 60
Period size: 12 Copynumber: 7.6 Consensus size: 12
45871619 GTTCAATTAT
*
45871629 ATGTTCATGAAC
1 ATGTTCGTGAAC
**
45871641 ATGTTCGTTTA-
1 ATGTTCGTGAAC
45871652 ATGTTCGTGAAC
1 ATGTTCGTGAAC
*
45871664 ATGTTCGAT-TA-
1 ATGTTCG-TGAAC
*
45871675 ATGTTCGTGAAT
1 ATGTTCGTGAAC
*
45871687 ATGTTCGAT-TA-
1 ATGTTCG-TGAAC
*
45871698 ATATTCGTGAAC
1 ATGTTCGTGAAC
45871710 ATGTTCG
1 ATGTTCG
45871717 ATTAAGTTAA
Statistics
Matches: 58, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
10 2 0.03
11 24 0.41
12 30 0.52
13 2 0.03
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.41
Consensus pattern (12 bp):
ATGTTCGTGAAC
Done.