Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 171 of 171
Found at i:50791141 original size:17 final size:16
Alignment explanation
Indices: 50791121--50791194 Score: 89
Period size: 17 Copynumber: 4.6 Consensus size: 16
50791111 AATTTTTATT
*
50791121 TAAATTTAAATTCAAA
1 TAAATTTAAATTTAAA
*
50791137 GTAAATTTAAA--TAAT
1 -TAAATTTAAATTTAAA
50791152 TAAATTTAAATTTAAAA
1 TAAATTTAAATTT-AAA
50791169 TAAATTTAAATTTAAA
1 TAAATTTAAATTTAAA
*
50791185 TAAAATTAAA
1 TAAATTTAAA
50791195 AATCAATTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
14 10 0.20
15 2 0.04
16 13 0.26
17 25 0.50
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (16 bp):
TAAATTTAAATTTAAA
Found at i:50791147 original size:6 final size:6
Alignment explanation
Indices: 50791095--50791185 Score: 78
Period size: 6 Copynumber: 15.0 Consensus size: 6
50791085 TTTTTTAATG
* * ** * *
50791095 TTAAAT TTAATGT TTTAAT TTTTAT TTAAAT TTAAAT TCAAA- GTAAAT
1 TTAAAT TTAA-AT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
50791143 TTAAAT AATTAAAT TTAAAT TTAAA- ATAAAT TTAAAT TTAAAT
1 TTAAAT --TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
50791186 AAAATTAAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
5 7 0.10
6 51 0.75
7 4 0.06
8 6 0.09
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (6 bp):
TTAAAT
Found at i:50791155 original size:31 final size:31
Alignment explanation
Indices: 50791120--50791205 Score: 106
Period size: 31 Copynumber: 2.9 Consensus size: 31
50791110 TAATTTTTAT
*
50791120 TTAAATTTAAATTCAAAGTAAATTTAAATAA
1 TTAAATTTAAATTCAAAATAAATTTAAATAA
*
50791151 TTAAATTTAAATTTAAAATAAATTTAAAT--
1 TTAAATTTAAATTCAAAATAAATTTAAATAA
* * *
50791180 TTAAA-TAAAATTAAAAATCAATTTAA
1 TTAAATTTAAATTCAAAATAAATTTAA
50791206 CTCTAAATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
28 18 0.36
29 5 0.10
31 27 0.54
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (31 bp):
TTAAATTTAAATTCAAAATAAATTTAAATAA
Found at i:50791212 original size:28 final size:28
Alignment explanation
Indices: 50791159--50791213 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
50791149 AATTAAATTT
* *
50791159 AAATTTAAAATAAATTTAAATTTAAATA
1 AAATTAAAAATAAATTTAAATCTAAATA
* *
50791187 AAATTAAAAATCAATTTAACTCTAAAT
1 AAATTAAAAATAAATTTAAATCTAAAT
50791214 TAAACGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.36
Consensus pattern (28 bp):
AAATTAAAAATAAATTTAAATCTAAATA
Found at i:50791223 original size:28 final size:28
Alignment explanation
Indices: 50791165--50791223 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
50791155 ATTTAAATTT
* **
50791165 AAAATAAATTTAAATTTAAATAAAATTA
1 AAAATAAATTTAAATCTAAATAAAACGA
* * *
50791193 AAAATCAATTTAACTCTAAATTAAACGA
1 AAAATAAATTTAAATCTAAATAAAACGA
50791221 AAA
1 AAA
50791224 GTCTAAGCCC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.31
Consensus pattern (28 bp):
AAAATAAATTTAAATCTAAATAAAACGA
Found at i:50791630 original size:31 final size:31
Alignment explanation
Indices: 50791592--50791772 Score: 112
Period size: 37 Copynumber: 5.4 Consensus size: 31
50791582 TTATCCACTC
50791592 TACTTCAATTTCAAGGGGATGACGTTGCTCT
1 TACTTCAATTTCAAGGGGATGACGTTGCTCT
* * *
50791623 TACTTCAATTTCAGAGATGGA-GACATGTTATCCACT
1 TACTTCAATTTCA-AG-GGGATGAC--G-T-TGCTCT
* * *
50791659 CTACTTCAATTTCAAGCGGATTGGCATTGCTCT
1 -TACTTCAATTTCAAGGGGA-TGACGTTGCTCT
* *** * * *
50791692 TACTTCAGTTTCAGAGATTAAGACGTGTTATCCACT
1 TACTTCAATTTCA-AGGGGATGAC--G-T-TGCTCT
50791728 CTACTTCAATTTCAAGGGGATGACGTTGCTCT
1 -TACTTCAATTTCAAGGGGATGACGTTGCTCT
50791760 TACTTCAATTTCA
1 TACTTCAATTTCA
50791773 GAGATAAAGG
Statistics
Matches: 111, Mismatches: 24, Indels: 30
0.67 0.15 0.18
Matches are distributed among these distances:
31 26 0.23
32 23 0.21
33 11 0.10
34 3 0.03
35 5 0.05
36 16 0.14
37 27 0.24
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (31 bp):
TACTTCAATTTCAAGGGGATGACGTTGCTCT
Found at i:50791881 original size:76 final size:76
Alignment explanation
Indices: 50791760--50792181 Score: 581
Period size: 76 Copynumber: 5.8 Consensus size: 76
50791750 ACGTTGCTCT
*
50791760 TACTTCAATTTCAGAGATAAAGGCGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAC
1 TACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAC
50791825 GATGTTACTCC
66 GATGTTACTCC
* *
50791836 TACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAC
1 TACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAC
50791901 GATGTTACTCC
66 GATGTTACTCC
*
50791912 TACTTCAATTTCAGAGATGAAA-ACGTGTTATCC-ACTCTACTTCAATTTCAAGGGGAT--G--A
1 TACTTCAATTTCAGAGAT-AAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAA
* *
50791971 CGTTG-CACT--
65 CGATGTTACTCC
* * *
50791980 TACTTCAATTTCAGAAATAAAGGCGCGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAC
1 TACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAC
50792045 GATGTTACTCC
66 GATGTTACTCC
* *
50792056 TACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT--G--AC
1 TACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAC
* *
50792117 ---GTTGCTCT
66 GATGTTACTCC
* *
50792125 TACTTCAATTTCAGAGATAAAGGCGTGTTATCC-ACTCTACTTCAATTTCAAGCGGAT
1 TACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
50792182 TGGCATTGAT
Statistics
Matches: 311, Mismatches: 25, Indels: 28
0.85 0.07 0.08
Matches are distributed among these distances:
67 3 0.01
68 49 0.16
69 59 0.19
70 3 0.01
71 6 0.02
72 2 0.01
73 6 0.02
74 4 0.01
75 23 0.07
76 154 0.50
77 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (76 bp):
TACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAC
GATGTTACTCC
Found at i:50791944 original size:220 final size:214
Alignment explanation
Indices: 50791548--50792181 Score: 925
Period size: 220 Copynumber: 3.0 Consensus size: 214
50791538 GGAAATGATC
* * * * *
50791548 TTGCTCTTATTTCAATTTTAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGGGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGGCGTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
* * * *
50791612 --G--AC---GTTGCTCTTACTTCAATTTCAGAGATGGAGACATGTTATCC-ACTCTACTTCAAT
66 AGGAAACGATGTTACTCCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAAT
* * *
50791669 TTCAAGCGGATTGG-CA-TTGCTCTTACTTCAGTTTCAGAGATTAAGACGTGTTATCCACTCTAC
131 TTCAAGAGGA-TGGACAGTTGCTCTTACTTCAATTTCAGAGA-TAAAACGTGTTATCCACTCTAC
50791732 TTCAATTTCAAGGGGATGACG
194 TTCAATTTCAAGGGGATGACG
50791753 TTGCTCTTACTTCAATTTCAGAGATAAAGGCGTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGGCGTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
50791818 AGGAAACGATGTTACTCCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAAT
66 AGGAAACGATGTTACTCCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAAT
* *
50791883 TTCAAGAGGATAGGAAACGATGTTACTCCTACTTCAATTTCAGAGATGAAAACGTGTTATCCACT
131 TTCAAGAGGAT-GG--AC-A-GTTGCTCTTACTTCAATTTCAGAGAT-AAAACGTGTTATCCACT
50791948 CTACTTCAATTTCAAGGGGATGACG
190 CTACTTCAATTTCAAGGGGATGACG
* * *
50791973 TTGCACTTACTTCAATTTCAGAAATAAAGGCGCGTTATCCAACTCTACTTCAATTTCAAGAGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGGCGTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
50792038 AGGAAACGATGTTACTCCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAAT
66 AGGAAACGATGTTACTCCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAAT
*
50792103 TTCAAGAGGAT-GAC-GTTGCTCTTACTTCAATTTCAGAGATAAAGGCGTGTTATCCACTCTACT
131 TTCAAGAGGATGGACAGTTGCTCTTACTTCAATTTCAGAGATAAA-ACGTGTTATCCACTCTACT
*
50792166 TCAATTTCAAGCGGAT
195 TCAATTTCAAGGGGAT
50792182 TGGCATTGAT
Statistics
Matches: 390, Mismatches: 21, Indels: 28
0.89 0.05 0.06
Matches are distributed among these distances:
205 36 0.09
206 23 0.06
208 1 0.00
210 2 0.01
212 3 0.01
213 95 0.24
214 24 0.06
216 2 0.01
217 1 0.00
218 2 0.01
219 1 0.00
220 200 0.51
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (214 bp):
TTGCTCTTACTTCAATTTCAGAGATAAAGGCGTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
AGGAAACGATGTTACTCCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAAT
TTCAAGAGGATGGACAGTTGCTCTTACTTCAATTTCAGAGATAAAACGTGTTATCCACTCTACTT
CAATTTCAAGGGGATGACG
Found at i:50791984 original size:144 final size:137
Alignment explanation
Indices: 50791548--50792181 Score: 743
Period size: 144 Copynumber: 4.5 Consensus size: 137
50791538 GGAAATGATC
* * * *
50791548 TTGCTCTTATTTCAATTTTAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
* * * * * *
50791613 ACGTTGCTCTTACTTCAATTTCAGAGATGGAGACATGTTATCC-ACTCTACTTCAATTTCAAGCG
66 ACGTTACTCCTACTTCAATTTCAGAGATGAAAACGTGTTATCCAACTCTACTTCAATTTCAAGAG
* *
50791677 GATTGGCA
131 GA-TGACG
* * *
50791685 TTGCTCTTACTTCAGTTTCAGAGATTAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
* * *
50791750 ACGTTGCTCTTACTTCAATTTCAGAGAT-AAAGGCGTGTTATCCAACTCTACTTCAATTTCAAGA
66 ACGTTACTCCTACTTCAATTTCAGAGATGAAA-ACGTGTTATCCAACTCTACTTCAATTTCAAGA
50791814 GGATAGGAAACGATG
130 GGAT--G--AC---G
* * * *
50791829 TTACTCCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGAT
50791894 AGGAAACGATGTTACTCCTACTTCAATTTCAGAGATGAAAACGTGTTATCC-ACTCTACTTCAAT
65 --G--AC---GTTACTCCTACTTCAATTTCAGAGATGAAAACGTGTTATCCAACTCTACTTCAAT
*
50791958 TTCAAGGGGATGACG
123 TTCAAGAGGATGACG
* * * *
50791973 TTGCACTTACTTCAATTTCAGAAATAAAGGCGCGTTATCCAACTCTACTTCAATTTCAAGAGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGAT
* *
50792038 AGGAAACGATGTTACTCCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAAT
65 --G--AC---GTTACTCCTACTTCAATTTCAGAGATGAAAACGTGTTATCCAACTCTACTTCAAT
50792103 TTCAAGAGGATGACG
123 TTCAAGAGGATGACG
* *
50792118 TTGCTCTTACTTCAATTTCAGAGATAAAGGCGTGTTATCCACTCTACTTCAATTTCAAGCGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
50792182 TGGCATTGAT
Statistics
Matches: 442, Mismatches: 36, Indels: 31
0.87 0.07 0.06
Matches are distributed among these distances:
136 1 0.00
137 99 0.22
138 22 0.05
139 1 0.00
141 1 0.00
144 165 0.37
145 87 0.20
147 3 0.01
149 3 0.01
151 23 0.05
152 34 0.08
153 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (137 bp):
TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
ACGTTACTCCTACTTCAATTTCAGAGATGAAAACGTGTTATCCAACTCTACTTCAATTTCAAGAG
GATGACG
Found at i:50792097 original size:38 final size:37
Alignment explanation
Indices: 50791558--50792174 Score: 373
Period size: 38 Copynumber: 17.3 Consensus size: 37
50791548 TTGCTCTTAT
*
50791558 TTCAATTTTAGAGATGAAGACGTGTTATCCACTCTAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCCACTCTAC
** * * *
50791595 TTCAATTTCA-AGGGGATGAC--G-T-TGCTCT-TAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCCACTCTAC
* *
50791626 TTCAATTTCAGAGATGGAGACATGTTATCCACTCTAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCCACTCTAC
* * ** **
50791663 TTCAATTTCA-AG-CG--GA-TTGGCAT-TGCTCTTAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCCACTC-TAC
* *
50791695 TTCAGTTTCAGAGATTAAGACGTGTTATCCACTCTAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCCACTCTAC
** * * *
50791732 TTCAATTTCA-AGGGGATGAC--G-T-TGCTCT-TAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCCACTCTAC
* *
50791763 TTCAATTTCAGAGATAAAGGCGTGTTATCCAACTCTAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTAC
*
50791801 TTCAATTTCAAGAGGATAGGAA-ACGATGTTA--CTC-CTAC
1 TTCAATTTC-AGA-GAT--GAAGACG-TGTTATCCACTCTAC
*
50791839 TTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTAC
*
50791877 TTCAATTTCAAGAGGATAGGAA-ACGATGTTA--CTC-CTAC
1 TTCAATTTC-AGA-GAT--GAAGACG-TGTTATCCACTCTAC
*
50791915 TTCAATTTCAGAGATGAAAACGTGTTATCCACTCTAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCCACTCTAC
** * *
50791952 TTCAATTTCA-AGGGGATGAC--G-T-TGCACT-TAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCCACTCTAC
* * * *
50791983 TTCAATTTCAGAAATAAAGGCGCGTTATCCAACTCTAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTAC
*
50792021 TTCAATTTCAAGAGGATAGGAA-ACGATGTTA--CTC-CTAC
1 TTCAATTTC-AGA-GAT--GAAGACG-TGTTATCCACTCTAC
*
50792059 TTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTAC
* * * *
50792097 TTCAATTTCA-AGAGGATGAC--G-T-TGCTCT-TAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCCACTCTAC
* *
50792128 TTCAATTTCAGAGATAAAGGCGTGTTATCCACTCTAC
1 TTCAATTTCAGAGATGAAGACGTGTTATCCACTCTAC
50792165 TTCAATTTCA
1 TTCAATTTCA
50792175 AGCGGATTGG
Statistics
Matches: 441, Mismatches: 77, Indels: 124
0.69 0.12 0.19
Matches are distributed among these distances:
31 55 0.12
32 52 0.12
33 9 0.02
34 32 0.07
35 13 0.03
36 48 0.11
37 89 0.20
38 93 0.21
39 12 0.03
40 11 0.02
41 6 0.01
42 21 0.05
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (37 bp):
TTCAATTTCAGAGATGAAGACGTGTTATCCACTCTAC
Found at i:50804358 original size:29 final size:30
Alignment explanation
Indices: 50804317--50804477 Score: 121
Period size: 29 Copynumber: 5.5 Consensus size: 30
50804307 ACCCGAGGGT
*
50804317 AAAATGGTGATTTTGGTGAAATAGGGGTTA
1 AAAATGGTAATTTTGGTGAAATAGGGGTTA
*
50804347 AAAATGG-AATTTT-G-GAAAGTTCGAGGG-T-
1 AAAATGGTAATTTTGGTGAAA--TAG-GGGTTA
50804375 AAAATGGTAATTTTCGGTGAAATCA-GGGTTA
1 AAAATGGTAATTTT-GGTGAAAT-AGGGGTTA
*
50804406 AAAATGG-AATTTT--TAAAGATTCAGGGG-T-
1 AAAATGGTAATTTTGGTGAA-A-T-AGGGGTTA
*
50804434 AAAATGGTAATTTTTGGTGAAATCGGGGTTA
1 AAAATGGTAA-TTTTGGTGAAATAGGGGTTA
50804465 AAAATGG-AATTTT
1 AAAATGGTAATTTT
50804478 AGAATATTCG
Statistics
Matches: 106, Mismatches: 6, Indels: 39
0.70 0.04 0.26
Matches are distributed among these distances:
27 7 0.07
28 16 0.15
29 31 0.29
30 29 0.27
31 16 0.15
32 7 0.07
ACGTcount: A:0.36, C:0.03, G:0.28, T:0.33
Consensus pattern (30 bp):
AAAATGGTAATTTTGGTGAAATAGGGGTTA
Found at i:50804488 original size:29 final size:28
Alignment explanation
Indices: 50804340--50804506 Score: 98
Period size: 29 Copynumber: 5.7 Consensus size: 28
50804330 TGGTGAAATA
*
50804340 GGGGTTAAAAATGG-AATTTTGGAAAGTTC
1 GGGGTT-AAAATGGTAATTTTAGAAA-TTC
*
50804369 GAGGG-TAAAATGGTAATTTTCGGTGAAA-TC
1 G-GGGTTAAAATGGTAATTTT---AGAAATTC
*
50804399 AGGGTTAAAAATGG-AATTTTTA-AAGATTC
1 GGGGTT-AAAATGGTAA-TTTTAGAA-ATTC
*
50804428 AGGGG-TAAAATGGTAATTTTTGGTGAAA-TC
1 -GGGGTTAAAATGGTAA-TTTT--AGAAATTC
50804458 GGGGTTAAAAATGG-AATTTTAGAATATTC
1 GGGGTT-AAAATGGTAATTTTAGAA-ATTC
*
50804487 GGGGGTAAAATGGTAATTTT
1 GGGGTTAAAATGGTAATTTT
50804507 TGGAAGTTTT
Statistics
Matches: 111, Mismatches: 7, Indels: 40
0.70 0.04 0.25
Matches are distributed among these distances:
27 5 0.05
28 23 0.21
29 42 0.38
30 16 0.14
31 19 0.17
32 6 0.05
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.33
Consensus pattern (28 bp):
GGGGTTAAAATGGTAATTTTAGAAATTC
Found at i:50804492 original size:30 final size:28
Alignment explanation
Indices: 50804313--50804507 Score: 97
Period size: 30 Copynumber: 6.7 Consensus size: 28
50804303 GGATACCCGA
* *
50804313 GGGTAAAATGGTGATTTTGGT-GAAA-TAG
1 GGGTAAAATGGTAATTTT--TAGAAATTCG
*
50804341 GGGTTAAAAATGG-AA-TTTTGGAAAGTTCG
1 GGG-T-AAAATGGTAATTTTTAGAAA-TTCG
50804370 AGGGTAAAATGGTAATTTTCGGT-GAAA-TCAG
1 -GGGTAAAATGGTAATTTT---TAGAAATTC-G
*
50804401 GGTTAAAAATGG-AATTTTTA-AAGATTCAG
1 GGGT-AAAATGGTAATTTTTAGAA-ATTC-G
*
50804430 GGGTAAAATGGTAATTTTTGGTGAAA-TCG
1 GGGTAAAATGGTAATTTTT--AGAAATTCG
50804459 GGGTTAAAAATGG-AA-TTTTAGAATATTCGG
1 GGG-T-AAAATGGTAATTTTTAGAA-ATTC-G
50804489 GGGTAAAATGGTAATTTTT
1 GGGTAAAATGGTAATTTTT
50804508 GGAAGTTTTG
Statistics
Matches: 134, Mismatches: 6, Indels: 52
0.70 0.03 0.27
Matches are distributed among these distances:
26 1 0.01
27 10 0.07
28 29 0.22
29 34 0.25
30 37 0.28
31 16 0.12
32 6 0.04
33 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (28 bp):
GGGTAAAATGGTAATTTTTAGAAATTCG
Found at i:50804507 original size:59 final size:58
Alignment explanation
Indices: 50804313--50804509 Score: 281
Period size: 59 Copynumber: 3.4 Consensus size: 58
50804303 GGATACCCGA
* * * *
50804313 GGGTAAAATGGTGA-TTTTGGTGAAATAGGGGTTAAAAATGGAATTTTGGAAAGTTCGA
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAA-TTCGG
* * *
50804371 GGGTAAAATGGTAATTTTCGGTGAAATCAGGGTTAAAAATGGAATTTTTA-AAGATTCAG
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAA-TTTTAGAA-ATTCGG
50804430 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAATATTCGG
1 GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAA-ATTCGG
50804489 GGGTAAAATGGTAATTTTTGG
1 GGGTAAAATGGTAATTTTTGG
50804510 AAGTTTTGGG
Statistics
Matches: 124, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
58 18 0.15
59 101 0.81
60 5 0.04
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (58 bp):
GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTAGAAATTCGG
Found at i:50805446 original size:24 final size:22
Alignment explanation
Indices: 50805386--50805446 Score: 52
Period size: 24 Copynumber: 2.7 Consensus size: 22
50805376 CCTTCTTTTT
50805386 TATTT-TTTTATTTTCAAAATA
1 TATTTATTTTATTTTCAAAATA
*** *
50805407 TATATTATTCCCTTTTCCAAAATCC
1 TAT-TTATTTTATTTT-CAAAAT-A
50805432 TATTTATTTTATTTT
1 TATTTATTTTATTTT
50805447 TTATTGTTAT
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
21 3 0.10
22 2 0.07
23 6 0.21
24 15 0.52
25 3 0.10
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.59
Consensus pattern (22 bp):
TATTTATTTTATTTTCAAAATA
Found at i:50806474 original size:17 final size:16
Alignment explanation
Indices: 50806454--50806527 Score: 89
Period size: 17 Copynumber: 4.6 Consensus size: 16
50806444 AATTTTTATT
*
50806454 TAAATTTAAATTCAAA
1 TAAATTTAAATTTAAA
*
50806470 GTAAATTTAAA--TAAT
1 -TAAATTTAAATTTAAA
50806485 TAAATTTAAATTTAAAA
1 TAAATTTAAATTT-AAA
50806502 TAAATTTAAATTTAAA
1 TAAATTTAAATTTAAA
*
50806518 TAAAATTAAA
1 TAAATTTAAA
50806528 AATCAATTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
14 10 0.20
15 2 0.04
16 13 0.26
17 25 0.50
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (16 bp):
TAAATTTAAATTTAAA
Found at i:50806480 original size:6 final size:6
Alignment explanation
Indices: 50806428--50806518 Score: 78
Period size: 6 Copynumber: 15.0 Consensus size: 6
50806418 TTTTTTAATG
* * ** * *
50806428 TTAAAT TTAATGT TTTAAT TTTTAT TTAAAT TTAAAT TCAAA- GTAAAT
1 TTAAAT TTAA-AT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
50806476 TTAAAT AATTAAAT TTAAAT TTAAA- ATAAAT TTAAAT TTAAAT
1 TTAAAT --TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
50806519 AAAATTAAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
5 7 0.10
6 51 0.75
7 4 0.06
8 6 0.09
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (6 bp):
TTAAAT
Found at i:50806488 original size:31 final size:31
Alignment explanation
Indices: 50806453--50806538 Score: 106
Period size: 31 Copynumber: 2.9 Consensus size: 31
50806443 TAATTTTTAT
*
50806453 TTAAATTTAAATTCAAAGTAAATTTAAATAA
1 TTAAATTTAAATTCAAAATAAATTTAAATAA
*
50806484 TTAAATTTAAATTTAAAATAAATTTAAAT--
1 TTAAATTTAAATTCAAAATAAATTTAAATAA
* * *
50806513 TTAAA-TAAAATTAAAAATCAATTTAA
1 TTAAATTTAAATTCAAAATAAATTTAA
50806539 CTCTAAATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
28 18 0.36
29 5 0.10
31 27 0.54
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (31 bp):
TTAAATTTAAATTCAAAATAAATTTAAATAA
Found at i:50806545 original size:28 final size:28
Alignment explanation
Indices: 50806492--50806546 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
50806482 AATTAAATTT
* *
50806492 AAATTTAAAATAAATTTAAATTTAAATA
1 AAATTAAAAATAAATTTAAATCTAAATA
* *
50806520 AAATTAAAAATCAATTTAACTCTAAAT
1 AAATTAAAAATAAATTTAAATCTAAAT
50806547 TAAACGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.36
Consensus pattern (28 bp):
AAATTAAAAATAAATTTAAATCTAAATA
Found at i:50806556 original size:28 final size:28
Alignment explanation
Indices: 50806498--50806556 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
50806488 ATTTAAATTT
* **
50806498 AAAATAAATTTAAATTTAAATAAAATTA
1 AAAATAAATTTAAATCTAAATAAAACGA
* * *
50806526 AAAATCAATTTAACTCTAAATTAAACGA
1 AAAATAAATTTAAATCTAAATAAAACGA
50806554 AAA
1 AAA
50806557 GTCTAAGCCC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.31
Consensus pattern (28 bp):
AAAATAAATTTAAATCTAAATAAAACGA
Found at i:50809926 original size:2 final size:2
Alignment explanation
Indices: 50809919--50809948 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
50809909 AATAGCTGTT
50809919 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50809949 AACTAGGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:50813883 original size:18 final size:17
Alignment explanation
Indices: 50813839--50813908 Score: 56
Period size: 18 Copynumber: 4.2 Consensus size: 17
50813829 AGAAAAAATG
50813839 GGTTACAAGGAGATGAAA
1 GGTTA-AAGGAGATGAAA
* *
50813857 GATTTAAGGAAGATGAAA
1 GGTTAAAGG-AGATGAAA
*
50813875 GGTTAAA-G-G-TTAAA
1 GGTTAAAGGAGATGAAA
* *
50813889 GTTTAAAGAAGATGAAA
1 GGTTAAAGGAGATGAAA
50813906 GGT
1 GGT
50813909 GGAAGGTCAA
Statistics
Matches: 39, Mismatches: 9, Indels: 9
0.68 0.16 0.16
Matches are distributed among these distances:
14 10 0.26
15 1 0.03
16 1 0.03
17 11 0.28
18 16 0.41
ACGTcount: A:0.46, C:0.01, G:0.30, T:0.23
Consensus pattern (17 bp):
GGTTAAAGGAGATGAAA
Found at i:50813915 original size:31 final size:32
Alignment explanation
Indices: 50813854--50813915 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
50813844 CAAGGAGATG
* *
50813854 AAAGATTTAAGGAAGATGAAAGGTTAAAGGTT
1 AAAGATTTAAAGAAGATGAAAGGTGAAAGGTT
*
50813886 AAAG-TTTAAAGAAGATGAAAGGTGGAAGGT
1 AAAGATTTAAAGAAGATGAAAGGTGAAAGGT
50813916 CAAGGGAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.47, C:0.00, G:0.31, T:0.23
Consensus pattern (32 bp):
AAAGATTTAAAGAAGATGAAAGGTGAAAGGTT
Found at i:50830036 original size:33 final size:34
Alignment explanation
Indices: 50829977--50830040 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
50829967 TACTATAATG
50829977 CCCAAATATATTAAATAAAAAATAGTGATAAGTA
1 CCCAAATATATTAAATAAAAAATAGTGATAAGTA
50830011 CCCAAATATATTAAAT-AAAAATAGTGATAA
1 CCCAAATATATTAAATAAAAAATAGTGATAA
50830041 ATGATTAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 14 0.47
34 16 0.53
ACGTcount: A:0.56, C:0.09, G:0.08, T:0.27
Consensus pattern (34 bp):
CCCAAATATATTAAATAAAAAATAGTGATAAGTA
Found at i:50850597 original size:31 final size:31
Alignment explanation
Indices: 50850531--50850659 Score: 160
Period size: 30 Copynumber: 4.3 Consensus size: 31
50850521 ACATTAAAAT
** * *
50850531 GGGTCAAATTTGAATTTTAGAAAACTTT-AG
1 GGGTCAAATTCAAATTTTTGAAAAGTTTGAG
50850561 GGGTCAAATT-AGAATTTTTGAAAAGTTTGAG
1 GGGTCAAATTCA-AATTTTTGAAAAGTTTGAG
*
50850592 GGGTCAAATTCAAATTTTTGGAAAGTTTGA-
1 GGGTCAAATTCAAATTTTTGAAAAGTTTGAG
50850622 GGGTCAAATTCAAATTTTT-AGAAAGTTTG-G
1 GGGTCAAATTCAAATTTTTGA-AAAGTTTGAG
50850652 GGGTCAAA
1 GGGTCAAA
50850660 ACATAATGTT
Statistics
Matches: 89, Mismatches: 5, Indels: 10
0.86 0.05 0.10
Matches are distributed among these distances:
30 59 0.66
31 29 0.33
32 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (31 bp):
GGGTCAAATTCAAATTTTTGAAAAGTTTGAG
Found at i:50852113 original size:39 final size:38
Alignment explanation
Indices: 50851990--50852434 Score: 230
Period size: 40 Copynumber: 11.3 Consensus size: 38
50851980 TATAGCTTTA
* *
50851990 GGGGTAAAAGATTAGATTGTTTCAATCTGCCCTATGGTC
1 GGGGTAAAAGATTGGATTGTTTCAATCTGCCC-ATGGTT
* * * * * *
50852029 GGGGTAAGAGACCT-GATGGTCTTCAATCTACCCTCTTGTT
1 GGGGTAAAAGA-TTGGATTGT-TTCAATCTGCCC-ATGGTT
* * * *
50852069 AGGGTAAAAGGTTGGATTGTTTCAATCTGCACCATAGTC
1 GGGGTAAAAGATTGGATTGTTTCAATCTGC-CCATGGTT
* * *
50852108 GGGGTAAGAGATCGGATGGTCTTCAATCTGCTCTC-TGGTT
1 GGGGTAAAAGATTGGATTGT-TTCAATCTGC-C-CATGGTT
* * * *
50852148 AGGGTAAAAGATTGGATTGCTTCAATATGTCCCATGGTC
1 GGGGTAAAAGATTGGATTGTTTCAATCTG-CCCATGGTT
* * * * * *
50852187 GAGGTAAGAGATCGGATAGTTTTCAATCTACCCTCTGGTT
1 GGGGTAAAAGATTGGATTG-TTTCAATCTGCCC-ATGGTT
* *
50852227 AGGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTT
1 GGGGTAAAAGATTGGATTGTTTCAATCTG-CCCATGGTT
* *** * **
50852266 GGGGTAAGAGATCAAATAGTCTTCAATCTGCCTTTTGGTT
1 GGGGTAAAAGATTGGATTGT-TTCAATCTGCC-CATGGTT
* * * ** * * *
50852306 AGGGTAAAATATTAGATTACTTCAATCTTCCCCATAGTC
1 GGGGTAAAAGATTGGATTGTTTCAATC-TGCCCATGGTT
* * ** * * **
50852345 AGGGTAAGAGATCAGATGGTCTTCAATCTGCCCTCTAATT
1 GGGGTAAAAGATTGGATTGT-TTCAATCTGCCC-ATGGTT
* *
50852385 AGGGTAAAAGATTAGATTGCTTT-AATCTGCCCCATGGTT
1 GGGGTAAAAGATTGGATTG-TTTCAATCTG-CCCATGGTT
50852424 GGGGTAAAAGA
1 GGGGTAAAAGA
50852435 CTCGGGGTTG
Statistics
Matches: 300, Mismatches: 88, Indels: 36
0.71 0.21 0.08
Matches are distributed among these distances:
38 1 0.00
39 148 0.49
40 149 0.50
41 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (38 bp):
GGGGTAAAAGATTGGATTGTTTCAATCTGCCCATGGTT
Found at i:50852126 original size:79 final size:79
Alignment explanation
Indices: 50851991--50852439 Score: 547
Period size: 79 Copynumber: 5.7 Consensus size: 79
50851981 ATAGCTTTAG
* * * *
50851991 GGGTAAAAGATTAGATTGTTTCAATCTGCCCTATGGTCGGGGTAAGAGACCTGATGGTCTTCAAT
1 GGGTAAAAGATTAGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
*
50852056 CTACCCTCTTGTTA
66 CTACCCTCTGGTTA
* * * * *
50852070 GGGTAAAAGGTTGGATTGTTTCAATCTGCACCATAGTCGGGGTAAGAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTAGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
* *
50852135 CTGCTCTCTGGTTA
66 CTACCCTCTGGTTA
* * * * * *
50852149 GGGTAAAAGATTGGATTGCTTCAATATGTCCCATGGTCGAGGTAAGAGATCGGATAGTTTTCAAT
1 GGGTAAAAGATTAGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
50852214 CTACCCTCTGGTTA
66 CTACCCTCTGGTTA
* * ** *
50852228 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTTGGGGTAAGAGATCAAATAGTCTTCAAT
1 GGGTAAAAGATTAGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
* * *
50852293 CTGCCTTTTGGTTA
66 CTACCCTCTGGTTA
* * * * * *
50852307 GGGTAAAATATTAGATTACTTCAATCTTCCCCATAGTCAGGGTAAGAGATCAGATGGTCTTCAAT
1 GGGTAAAAGATTAGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
* **
50852372 CTGCCCTCTAATTA
66 CTACCCTCTGGTTA
* * *
50852386 GGGTAAAAGATTAGATTGCTTTAATCTGCCCCATGGTTGGGGTAAAAGACTCGG
1 GGGTAAAAGATTAGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGA-TCGG
50852440 GGTTGTAACT
Statistics
Matches: 316, Mismatches: 53, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
79 313 0.99
80 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (79 bp):
GGGTAAAAGATTAGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
CTACCCTCTGGTTA
Found at i:50852406 original size:237 final size:237
Alignment explanation
Indices: 50851991--50852422 Score: 614
Period size: 237 Copynumber: 1.8 Consensus size: 237
50851981 ATAGCTTTAG
* * ** *
50851991 GGGTAAAAGATTAGATTGTTTCAATCTGCCCTATGGTCGGGGTAAGAGACCTGATGGTCTTCAAT
1 GGGTAAAAGATTAGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGACCAAATAGTCTTCAAT
* * ** *
50852056 CTACCCTCTTGTTAGGGTAAAAGGTTGGATTGTTTCAATCTGCACCATAGTCGGGGTAAGAGATC
66 CTACCCTCTTGTTAGGGTAAAAGATTAGATTACTTCAATCTGCACCATAGTCAGGGTAAGAGATC
* * ** * *
50852121 GGATGGTCTTCAATCTGCTCTCTGGTTAGGGTAAAAGATTGGATTGCTTCAATATGTCCCATGGT
131 AGATGGTCTTCAATCTGCCCTCTAATTAGGGTAAAAGATTAGATTGCTTCAATATGCCCCATGGT
50852186 CGAGGTAAGAGATCGGATAGTTTTCAATCTACCCTCTGGTTA
196 CGAGGTAAGAGATCGGATAGTTTTCAATCTACCCTCTGGTTA
* * *
50852228 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTTGGGGTAAGAGATCAAATAGTCTTCAAT
1 GGGTAAAAGATTAGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGACCAAATAGTCTTCAAT
* * * * *
50852293 CT-GCCTTTTGGTTAGGGTAAAATATTAGATTACTTCAATCTTCCCCATAGTCAGGGTAAGAGAT
66 CTACCCTCTT-GTTAGGGTAAAAGATTAGATTACTTCAATCTGCACCATAGTCAGGGTAAGAGAT
* *
50852357 CAGATGGTCTTCAATCTGCCCTCTAATTAGGGTAAAAGATTAGATTGCTTTAATCTGCCCCATGG
130 CAGATGGTCTTCAATCTGCCCTCTAATTAGGGTAAAAGATTAGATTGCTTCAATATGCCCCATGG
50852422 T
195 T
50852423 TGGGGTAAAA
Statistics
Matches: 168, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
236 5 0.03
237 163 0.97
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (237 bp):
GGGTAAAAGATTAGATTGCTTCAATCTGCCCCATGGTCGGGGTAAGAGACCAAATAGTCTTCAAT
CTACCCTCTTGTTAGGGTAAAAGATTAGATTACTTCAATCTGCACCATAGTCAGGGTAAGAGATC
AGATGGTCTTCAATCTGCCCTCTAATTAGGGTAAAAGATTAGATTGCTTCAATATGCCCCATGGT
CGAGGTAAGAGATCGGATAGTTTTCAATCTACCCTCTGGTTA
Found at i:50852619 original size:51 final size:50
Alignment explanation
Indices: 50852494--50852627 Score: 142
Period size: 50 Copynumber: 2.7 Consensus size: 50
50852484 TCCTTACAAT
* * * *
50852494 TTCAATCTGCCCCTCTACAGCTTTAGATGAATAAGATTCGCCATTGTGAC
1 TTCAATCTGCCCCTTTACAGCTTTAGGTGTATAAGATTCGCCATTGAGAC
* * * * ** *
50852544 TTCAATCTGTCTCTTTACAACTTTAGGTGTATGAGATTTTCCATTGAGGC
1 TTCAATCTGCCCCTTTACAGCTTTAGGTGTATAAGATTCGCCATTGAGAC
* *
50852594 TTCAAATCTACCCCTTTACAGCTTTAGGGGTATA
1 TTC-AATCTGCCCCTTTACAGCTTTAGGTGTATA
50852628 TGACTCGTCG
Statistics
Matches: 66, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
50 42 0.64
51 24 0.36
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (50 bp):
TTCAATCTGCCCCTTTACAGCTTTAGGTGTATAAGATTCGCCATTGAGAC
Found at i:50853251 original size:112 final size:112
Alignment explanation
Indices: 50853047--50853265 Score: 350
Period size: 112 Copynumber: 2.0 Consensus size: 112
50853037 CTTTATATCG
* *
50853047 TTAGACCACTAACCGTCATTTCAATGCAAAAATGCTTGAACATGGTTGTAAAGTGGATAAAATTG
1 TTAGACCACTAACCATCATTTCAATGCAAAAATGCTTGAACAGGGTTGTAAAGTGGATAAAATTG
*
50853112 AATTTGATTGGAGGCAAAGCTCACATGAATGA-AAAGATTAAAAATCA
66 AATTTGATTGGAGGCAAAACTCACATGAATGAGAAA-ATTAAAAATCA
* * *
50853159 TTAGTCCACTAACCATCATTTCAATGCAAAAATGCTTGAACAGGGTTGTGAGGTGGATAAAATTG
1 TTAGACCACTAACCATCATTTCAATGCAAAAATGCTTGAACAGGGTTGTAAAGTGGATAAAATTG
* *
50853224 AATTTTATTGGAGGCAAAACTCGCATGAATGAGAAAATTAAA
66 AATTTGATTGGAGGCAAAACTCACATGAATGAGAAAATTAAA
50853266 CATTGATCAA
Statistics
Matches: 98, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
112 95 0.97
113 3 0.03
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (112 bp):
TTAGACCACTAACCATCATTTCAATGCAAAAATGCTTGAACAGGGTTGTAAAGTGGATAAAATTG
AATTTGATTGGAGGCAAAACTCACATGAATGAGAAAATTAAAAATCA
Found at i:50853580 original size:6 final size:6
Alignment explanation
Indices: 50853571--50853622 Score: 59
Period size: 6 Copynumber: 7.8 Consensus size: 6
50853561 TGACCTCCCT
50853571 TTTTTC TTTTTC TTTTCTTC TTTTTTC TTTTTC TTTTTCTC TTTTTC TTTTT
1 TTTTTC TTTTTC -TTT-TTC -TTTTTC TTTTTC -TTTT-TC TTTTTC TTTTT
50853623 TCTCCTTTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
6 19 0.45
7 14 0.33
8 9 0.21
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:50853593 original size:14 final size:14
Alignment explanation
Indices: 50853571--50853636 Score: 84
Period size: 14 Copynumber: 4.7 Consensus size: 14
50853561 TGACCTCCCT
50853571 TTTTTCTTTTTCT-
1 TTTTTCTTTTTCTC
50853584 TTTCTTCTTTTT-TC
1 TTT-TTCTTTTTCTC
50853598 TTTTTCTTTTTCTC
1 TTTTTCTTTTTCTC
50853612 TTTTTCTTTTTTCTCC
1 TTTTTC-TTTTTCT-C
50853628 TTTTT-TTTT
1 TTTTTCTTTT
50853637 ATTTTTTTGG
Statistics
Matches: 48, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
13 12 0.25
14 23 0.48
15 7 0.15
16 6 0.12
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTCTTTTTCTC
Found at i:50853595 original size:21 final size:19
Alignment explanation
Indices: 50853569--50853622 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 19
50853559 CTTGACCTCC
50853569 CTTTTTTCTTTTTCTTTTCTT
1 CTTTTTTCTTTTTC-TTT-TT
50853590 CTTTTTTCTTTTTCTTTTT
1 CTTTTTTCTTTTTCTTTTT
50853609 CTCTTTTTCTTTTT
1 CT-TTTTTCTTTTT
50853623 TCTCCTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 4 0.12
20 14 0.44
21 14 0.44
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (19 bp):
CTTTTTTCTTTTTCTTTTT
Found at i:50853624 original size:21 final size:22
Alignment explanation
Indices: 50853569--50853622 Score: 87
Period size: 21 Copynumber: 2.6 Consensus size: 22
50853559 CTTGACCTCC
50853569 CTTTTTTCTTTTTCTTTTCT-T
1 CTTTTTTCTTTTTCTTTTCTCT
50853590 CTTTTTTCTTTTTCTTTT-TCT
1 CTTTTTTCTTTTTCTTTTCTCT
50853611 C-TTTTTCTTTTT
1 CTTTTTTCTTTTT
50853623 TCTCCTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 12 0.38
21 20 0.62
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (22 bp):
CTTTTTTCTTTTTCTTTTCTCT
Found at i:50853636 original size:21 final size:19
Alignment explanation
Indices: 50853570--50853642 Score: 74
Period size: 21 Copynumber: 3.6 Consensus size: 19
50853560 TTGACCTCCC
50853570 TTTTTTCTTTTTCTTTTCTT
1 TTTTTTCTTTTTCTTTT-TT
50853590 CTTTTTTCTTTTTCTTTTTCT
1 -TTTTTTCTTTTTCTTTTT-T
* **
50853611 CTTTTTCTTTTTTCTCCTTT
1 TTTTTTC-TTTTTCTTTTTT
*
50853631 TTTTTTATTTTT
1 TTTTTTCTTTTT
50853643 TTGGGTGAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
19 5 0.11
20 13 0.29
21 27 0.60
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTTCTTTTTCTTTTTT
Found at i:50853642 original size:27 final size:26
Alignment explanation
Indices: 50853571--50853643 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 26
50853561 TGACCTCCCT
50853571 TTTTTCTTTTTCTTTTCTTCTTTTTTC
1 TTTTTCTTTTTCTTTT-TTCTTTTTTC
50853598 TTTTTCTTTTTCTCTTTTTCTTTTTTC
1 TTTTTCTTTTTCT-TTTTTCTTTTTTC
*
50853625 TCCTTTT-TTTTTATTTTTT
1 T--TTTTCTTTTTCTTTTTT
50853644 TGGGTGAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
27 29 0.69
28 9 0.21
29 4 0.10
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.82
Consensus pattern (26 bp):
TTTTTCTTTTTCTTTTTTCTTTTTTC
Found at i:50857986 original size:30 final size:30
Alignment explanation
Indices: 50857947--50858078 Score: 128
Period size: 30 Copynumber: 4.4 Consensus size: 30
50857937 TTTAGAAAAC
*
50857947 TTTAAGGGTTAAATCAAAATTTTTGGAAAG
1 TTTAGGGGTTAAATCAAAATTTTTGGAAAG
*** *
50857977 TTTAGGGGTTAAATTGGAATTTTTGGAAAA
1 TTTAGGGGTTAAATCAAAATTTTTGGAAAG
* *
50858007 TTTGGGGGTTAAATTC-AAATTTTTGAAAAG
1 TTTAGGGGTTAAA-TCAAAATTTTTGGAAAG
* *
50858037 TTTAGGGGTCAAAAT-ATAATTTTT-GAATAG
1 TTTAGGGGT-TAAATCAAAATTTTTGGAA-AG
50858067 TTTA-GGGTTAAA
1 TTTAGGGGTTAAA
50858079 AACCATTTTA
Statistics
Matches: 83, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
28 3 0.04
29 6 0.07
30 70 0.84
31 4 0.05
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.39
Consensus pattern (30 bp):
TTTAGGGGTTAAATCAAAATTTTTGGAAAG
Found at i:50861341 original size:6 final size:6
Alignment explanation
Indices: 50861332--50861370 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
50861322 AGCCGTTGGT
50861332 CAGAGG CAGAGG CAGAGG CAGAGG CAGAGG CAGAGG CAG
1 CAGAGG CAGAGG CAGAGG CAGAGG CAGAGG CAGAGG CAG
50861371 TGTCATTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.33, C:0.18, G:0.49, T:0.00
Consensus pattern (6 bp):
CAGAGG
Found at i:50875498 original size:6 final size:6
Alignment explanation
Indices: 50875487--50875526 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
50875477 GGTGGAGACT
50875487 GGAGAG GGAGAG GGAGAG GGAGAG GGAGAG GGAGAG GGAG
1 GGAGAG GGAGAG GGAGAG GGAGAG GGAGAG GGAGAG GGAG
50875527 TGTGTTTCTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.33, C:0.00, G:0.68, T:0.00
Consensus pattern (6 bp):
GGAGAG
Found at i:50877974 original size:25 final size:25
Alignment explanation
Indices: 50877929--50877979 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
50877919 TGATGAGTTA
*
50877929 TATGAATAATTTTATTAGAAACTAT
1 TATGAATAATTTTATGAGAAACTAT
* *
50877954 TATGAATAATTTTATGGGAAATTAT
1 TATGAATAATTTTATGAGAAACTAT
50877979 T
1 T
50877980 GGTGGAAAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (25 bp):
TATGAATAATTTTATGAGAAACTAT
Found at i:50888362 original size:38 final size:38
Alignment explanation
Indices: 50888303--50888377 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
50888293 CATGAGTCTA
** * *
50888303 TTCAGAATTGCGTCCAGAATTGTCACTGTATGACGATG
1 TTCAGAATTGCACCCAAAATTGTCACTGCATGACGATG
50888341 TTCAGAATTGCACCCAAAATTGTCACTGCATGACGAT
1 TTCAGAATTGCACCCAAAATTGTCACTGCATGACGAT
50888378 TGCCAGAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (38 bp):
TTCAGAATTGCACCCAAAATTGTCACTGCATGACGATG
Found at i:50888670 original size:2 final size:2
Alignment explanation
Indices: 50888658--50888694 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
50888648 AAGAGAAAAA
* *
50888658 CT CT TT CT CT CT CT CT CT TT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
50888695 CTTTAGTCTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
CT
Found at i:50890531 original size:21 final size:21
Alignment explanation
Indices: 50890497--50890538 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
50890487 TTTTTATATC
*
50890497 ATAAACAAATTAAAATTAATT
1 ATAAACAAATTAAAAATAATT
50890518 ATAAATCAAA-TAAAAATAATT
1 ATAAA-CAAATTAAAAATAATT
50890539 GAATTCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAAACAAATTAAAAATAATT
Found at i:50891372 original size:10 final size:11
Alignment explanation
Indices: 50891354--50891394 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
50891344 TTTAAATATC
50891354 AAATT-TTTTA
1 AAATTATTTTA
50891364 AAA-TATTTTA
1 AAATTATTTTA
*
50891374 AAATTAATTTA
1 AAATTATTTTA
50891385 AAATTATTTT
1 AAATTATTTT
50891395 TTAAATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
9 1 0.04
10 11 0.41
11 15 0.56
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
AAATTATTTTA
Found at i:50912378 original size:14 final size:14
Alignment explanation
Indices: 50912359--50912386 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50912349 ATCTAATACT
50912359 AATAGAAGAGAAAA
1 AATAGAAGAGAAAA
50912373 AATAGAAGAGAAAA
1 AATAGAAGAGAAAA
50912387 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (14 bp):
AATAGAAGAGAAAA
Found at i:50914551 original size:21 final size:21
Alignment explanation
Indices: 50914506--50914559 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
50914496 CAAAACAGGA
*
50914506 TTCTACCGATACAAGTGTCAT
1 TTCTACCGATACAAGTGACAT
50914527 TTCTACCGATAC-A-TGACAT
1 TTCTACCGATACAAGTGACAT
50914546 GCTTCTACCGATAC
1 --TTCTACCGATAC
50914560 TAAAAACTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 5 0.17
20 1 0.03
21 24 0.80
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (21 bp):
TTCTACCGATACAAGTGACAT
Found at i:50917151 original size:11 final size:11
Alignment explanation
Indices: 50917137--50917168 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
50917127 ATTTGGTTAA
50917137 ATTGATTTGTT
1 ATTGATTTGTT
50917148 ATTGATTTGTT
1 ATTGATTTGTT
50917159 ATTGATTTGT
1 ATTGATTTGT
50917169 ATTACTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.62
Consensus pattern (11 bp):
ATTGATTTGTT
Found at i:50917342 original size:18 final size:18
Alignment explanation
Indices: 50917319--50917354 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
50917309 ATTTGTGATC
50917319 AAAATTGAAAGTGAAAGT
1 AAAATTGAAAGTGAAAGT
* *
50917337 AAAATTGGAATTGAAAGT
1 AAAATTGAAAGTGAAAGT
50917355 GATATGAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.22, T:0.25
Consensus pattern (18 bp):
AAAATTGAAAGTGAAAGT
Found at i:50923661 original size:6 final size:6
Alignment explanation
Indices: 50923650--50923679 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
50923640 ATAATTCATA
50923650 TCACTT TCACTT TCACTT TCACTT TCACTT
1 TCACTT TCACTT TCACTT TCACTT TCACTT
50923680 ATTAAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.33, G:0.00, T:0.50
Consensus pattern (6 bp):
TCACTT
Found at i:50925512 original size:31 final size:31
Alignment explanation
Indices: 50925486--50925613 Score: 124
Period size: 31 Copynumber: 4.2 Consensus size: 31
50925476 TTGGTATCTG
*
50925486 AACTTGATATTTTTTCCTAATTTGGTACTTA
1 AACTTGATATTTTTTCCTAATTTGATACTTA
50925517 AAC-TG-T-TTTTTGGTCC-AATTTGATACTTA
1 AACTTGATATTTTT--TCCTAATTTGATACTTA
* *
50925546 AACTTGACATTTTTTCCTAATTTGATACCTA
1 AACTTGATATTTTTTCCTAATTTGATACTTA
* *
50925577 AACTTGACACTTTCTTT-CTAAGTTGGA-ACTTA
1 AACTTGATA-TTT-TTTCCTAA-TTTGATACTTA
50925609 AACTT
1 AACTT
50925614 TTTGAGGTCC
Statistics
Matches: 83, Mismatches: 5, Indels: 17
0.79 0.05 0.16
Matches are distributed among these distances:
28 5 0.06
29 16 0.19
30 10 0.12
31 24 0.29
32 21 0.25
33 7 0.08
ACGTcount: A:0.27, C:0.16, G:0.10, T:0.46
Consensus pattern (31 bp):
AACTTGATATTTTTTCCTAATTTGATACTTA
Found at i:50925641 original size:91 final size:91
Alignment explanation
Indices: 50925486--50925668 Score: 221
Period size: 91 Copynumber: 2.0 Consensus size: 91
50925476 TTGGTATCTG
* * * ** *
50925486 AACTTGATATTTTTTCCTAATTTGGTACTTAAACTGTTTTTTGGTCCAATTTGATACTTAAACTT
1 AACTTGACATTTTTTCCTAAGTTGGAACTTAAACTGTTTTGAGGTCCAATTTGATACCTAAACTT
*
50925551 GA-CATTTTTTCCTAATTTGATACCTA
66 GATC-CTTTTTCCTAATTTGATACCTA
*
50925577 AACTTGACACTTTCTTT-CTAAGTTGGAACTTAAACT-TTTTGAGGTCCAATTT-AGTACCTGAA
1 AACTTGACA-TTT-TTTCCTAAGTTGGAACTTAAACTGTTTTGAGGTCCAATTTGA-TACCTAAA
*
50925639 CTTGATCCTTTTTCCTAATTTGGTACCTA
63 CTTGATCCTTTTTCCTAATTTGATACCTA
50925668 A
1 A
50925669 TTTTTAATAT
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
90 1 0.01
91 54 0.68
92 21 0.27
93 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.11, T:0.45
Consensus pattern (91 bp):
AACTTGACATTTTTTCCTAAGTTGGAACTTAAACTGTTTTGAGGTCCAATTTGATACCTAAACTT
GATCCTTTTTCCTAATTTGATACCTA
Found at i:50925844 original size:27 final size:27
Alignment explanation
Indices: 50925803--50925854 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
50925793 TTTTTATAAT
* * *
50925803 ATTTAATAAATTTAGGTATCAAATTGA
1 ATTTAAAAAAATTAGGTACCAAATTGA
50925830 ATTTAAAAAAATTAGGTACCAAATT
1 ATTTAAAAAAATTAGGTACCAAATT
50925855 AAGAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.37
Consensus pattern (27 bp):
ATTTAAAAAAATTAGGTACCAAATTGA
Found at i:50933779 original size:20 final size:20
Alignment explanation
Indices: 50933754--50933796 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
50933744 CACTTACATA
50933754 TCTCCATTTTTCGCTTTCAT
1 TCTCCATTTTTCGCTTTCAT
50933774 TCTCCATTTTTCGCTTTCAT
1 TCTCCATTTTTCGCTTTCAT
50933794 TCT
1 TCT
50933797 TGCAGCTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.09, C:0.30, G:0.05, T:0.56
Consensus pattern (20 bp):
TCTCCATTTTTCGCTTTCAT
Found at i:50936340 original size:13 final size:13
Alignment explanation
Indices: 50936322--50936347 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50936312 TGTGGTTTCA
50936322 TGACCTTAAATAG
1 TGACCTTAAATAG
50936335 TGACCTTAAATAG
1 TGACCTTAAATAG
50936348 CGAGTTCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGACCTTAAATAG
Found at i:50939392 original size:173 final size:172
Alignment explanation
Indices: 50939078--50939418 Score: 556
Period size: 173 Copynumber: 2.0 Consensus size: 172
50939068 AACATGTTGA
*
50939078 ATGTCACAAATTGTTCCCATTTATTCTTATTAAAATAGTTGTGCATGGAGAGTTATTGTCAAGGT
1 ATGTCACAAATTGTTCCCATTTATGCTTATTAAAATAGTTGTGCATGGAGAGTTATTGTCAAGGT
* * * * * *
50939143 GTTATGCATTTAGTGTATTTTATATATGGCTGTACGAAATAACCTATATATGTTAAAAGTTCAGT
66 ATTATGCATTGAATGTACTTTATATATGGCTGTACGAAATAACCTACATATGTTAAAAGTTAAGT
50939208 TCAATTCTCATAATTCATTTGATTCCTTTACTAAAAAACATG
131 TCAATTCTCATAATTCATTTGATTCCTTTACTAAAAAACATG
* * *
50939250 ATGTCACAAATTGTTTCCATTTTATGCTTATTAAAATGGTTGTGCATGTAGAGTTATTGTCAAGG
1 ATGTCACAAATTGTTCCCA-TTTATGCTTATTAAAATAGTTGTGCATGGAGAGTTATTGTCAAGG
*
50939315 TATTATGCATTGAATGTACTTTATATATGGCTGTACGAAATAGCCTACATATGTTAAAAGTTAAG
65 TATTATGCATTGAATGTACTTTATATATGGCTGTACGAAATAACCTACATATGTTAAAAGTTAAG
* *
50939380 TTCAATTCTCATAATTCATTTTATTCCTTTGCTAAAAAA
130 TTCAATTCTCATAATTCATTTGATTCCTTTACTAAAAAA
50939419 ATTGTTTATT
Statistics
Matches: 155, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
172 18 0.12
173 137 0.88
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.41
Consensus pattern (172 bp):
ATGTCACAAATTGTTCCCATTTATGCTTATTAAAATAGTTGTGCATGGAGAGTTATTGTCAAGGT
ATTATGCATTGAATGTACTTTATATATGGCTGTACGAAATAACCTACATATGTTAAAAGTTAAGT
TCAATTCTCATAATTCATTTGATTCCTTTACTAAAAAACATG
Found at i:50940884 original size:35 final size:34
Alignment explanation
Indices: 50940845--50940955 Score: 118
Period size: 35 Copynumber: 3.3 Consensus size: 34
50940835 GAAAAAATCC
50940845 CAGTTTGAATTTCAATCAAAAAAAATAACCGTTGG
1 CAGTTTGAATTTCAAT-AAAAAAAATAACCGTTGG
**
50940880 CAGTTTGAATTAGAAATAAAAAAAATAACCGTTGG
1 CAGTTTGAATT-TCAATAAAAAAAATAACCGTTGG
* * * * *
50940915 CCGTTTAAACTTCAA-AAAAAAAAAAACCATTGG
1 CAGTTTGAATTTCAATAAAAAAAATAACCGTTGG
*
50940948 -AGGTTGAA
1 CAGTTTGAA
50940956 GGAGATTACC
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
32 5 0.08
33 16 0.25
34 2 0.03
35 37 0.59
36 3 0.05
ACGTcount: A:0.47, C:0.13, G:0.15, T:0.25
Consensus pattern (34 bp):
CAGTTTGAATTTCAATAAAAAAAATAACCGTTGG
Found at i:50951370 original size:23 final size:24
Alignment explanation
Indices: 50951343--50951392 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
50951333 GTTTAAAATG
*
50951343 AATATT-AAAAAATTTAATTATAA
1 AATATTAAAAAAATTTAAGTATAA
50951366 AATATTCAAAAAAATTTAAGTATAA
1 AATATT-AAAAAAATTTAAGTATAA
50951391 AA
1 AA
50951393 AATCTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 6 0.25
25 18 0.75
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (24 bp):
AATATTAAAAAAATTTAAGTATAA
Found at i:50951866 original size:32 final size:30
Alignment explanation
Indices: 50951802--50951870 Score: 77
Period size: 32 Copynumber: 2.3 Consensus size: 30
50951792 AATTTTAATG
*
50951802 ATTATT-ATTAAATATAATTTAATAAAAAT
1 ATTATTAATTAAATATAATTTAACAAAAAT
* * *
50951831 ATTAATTAATTAAATTATATTTTAACATAATT
1 ATT-ATTAATTAAA-TATAATTTAACAAAAAT
50951863 ATTATTAA
1 ATTATTAA
50951871 ATACAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 3 0.09
30 3 0.09
31 11 0.33
32 16 0.48
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (30 bp):
ATTATTAATTAAATATAATTTAACAAAAAT
Found at i:50951871 original size:58 final size:60
Alignment explanation
Indices: 50951802--50951960 Score: 202
Period size: 58 Copynumber: 2.7 Consensus size: 60
50951792 AATTTTAATG
*
50951802 ATTATTATTAAATATAATTTAATAAAAATATTAAT-TAATTAAATTATA-TTTTAACATA
1 ATTATTATTAAATATAATTTAATAAAAATATTAATATAATTAAATAATATTTTTAACATA
* * * *
50951860 ATTATTATTAAATACAATTTAAT-AAAATAAT-ATATAATTTAATAATATTTTTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATATTAATATAATTAAATAATATTTTTAACATA
50951918 ATTATTATTAAAATATGAA-TTAATAAAAATTATTATATATAAT
1 ATTATTATT-AAATAT-AATTTAATAAAAA-TATTA-ATATAAT
50951961 ATTAGAAAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
56 2 0.02
57 18 0.21
58 40 0.47
59 10 0.12
60 6 0.07
61 3 0.03
63 7 0.08
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (60 bp):
ATTATTATTAAATATAATTTAATAAAAATATTAATATAATTAAATAATATTTTTAACATA
Found at i:50951964 original size:15 final size:14
Alignment explanation
Indices: 50951804--50951964 Score: 54
Period size: 15 Copynumber: 11.4 Consensus size: 14
50951794 TTTTAATGAT
50951804 TATTATTAAATATAA
1 TATTATT-AATATAA
*
50951819 T-TTAATAA-A-AA
1 TATTATTAATATAA
50951830 TATTAATTAAT-TAAA
1 TATT-ATTAATAT-AA
* *
50951845 TTATATTTTAACATAA
1 -TAT-TATTAATATAA
*
50951861 TTATTATTAAATACAA
1 -TATTATT-AATATAA
* *
50951877 T-TTAATAAAATAA
1 TATTATTAATATAA
*
50951890 TATATAATTTA-ATAA
1 TAT-T-ATTAATATAA
*
50951905 TATTTTTAATATAA
1 TATTATTAATATAA
50951919 TTATTATT-A-A-AA
1 -TATTATTAATATAA
*
50951931 TATGAATTAATA-AA
1 TAT-TATTAATATAA
*
50951945 AATTATTATATATAA
1 TATTATTA-ATATAA
50951960 TATTA
1 TATTA
50951965 GAAAAATAAT
Statistics
Matches: 108, Mismatches: 19, Indels: 38
0.65 0.12 0.23
Matches are distributed among these distances:
11 6 0.06
12 8 0.07
13 21 0.19
14 23 0.21
15 27 0.25
16 21 0.19
17 2 0.02
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (14 bp):
TATTATTAATATAA
Found at i:50958772 original size:12 final size:13
Alignment explanation
Indices: 50958757--50958790 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
50958747 TATGTATCAC
*
50958757 AATATTTTTA-TA
1 AATATTTTAATTA
50958769 AATATTTTAATTA
1 AATATTTTAATTA
50958782 AATATTTTA
1 AATATTTTA
50958791 CAATTGCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATATTTTAATTA
Found at i:50963153 original size:32 final size:32
Alignment explanation
Indices: 50963117--50963181 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
50963107 ACACAACGAT
*
50963117 TAGATTAAATATTAAAATGTGCATATTAGTAC
1 TAGATTAAATATTAAAATATGCATATTAGTAC
*
50963149 TAGATTAAATATTAAAATATGTATATTAGTAC
1 TAGATTAAATATTAAAATATGCATATTAGTAC
50963181 T
1 T
50963182 CTGACAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.40
Consensus pattern (32 bp):
TAGATTAAATATTAAAATATGCATATTAGTAC
Found at i:50970116 original size:3 final size:3
Alignment explanation
Indices: 50970108--50970141 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
50970098 CTGTCACTTC
50970108 ATT ATT ATT ATT ATT AATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT
50970142 TGTTATCTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:50970147 original size:16 final size:16
Alignment explanation
Indices: 50970108--50970139 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
50970098 CTGTCACTTC
50970108 ATTATTATTATTATTA
1 ATTATTATTATTATTA
50970124 ATTATTATTATTATTA
1 ATTATTATTATTATTA
50970140 TTTGTTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTATTATTATTATTA
Found at i:50971475 original size:44 final size:45
Alignment explanation
Indices: 50971381--50971475 Score: 131
Period size: 46 Copynumber: 2.1 Consensus size: 45
50971371 GTTTAATTAT
*
50971381 AATGAAATAGAACTGTAATCAATATTTTAATTATTTGATTAAATGG
1 AATGAAATAGAACTGTAATCAATATTTT-AGTATTTGATTAAATGG
* *
50971427 AATGAAATAGAACTGTAAT-AATATTCTT-GTATTTGGTTGAATGG
1 AATGAAATAGAACTGTAATCAATATT-TTAGTATTTGATTAAATGG
50971471 AATGA
1 AATGA
50971476 CGCTGTAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
44 18 0.40
45 6 0.13
46 21 0.47
ACGTcount: A:0.41, C:0.04, G:0.17, T:0.38
Consensus pattern (45 bp):
AATGAAATAGAACTGTAATCAATATTTTAGTATTTGATTAAATGG
Found at i:50971633 original size:55 final size:55
Alignment explanation
Indices: 50971563--50971716 Score: 184
Period size: 55 Copynumber: 2.7 Consensus size: 55
50971553 TTATTGTTAA
* * * *
50971563 ATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAAATAATTTAATCAT
1 ATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAAATAATTAAATAAC
* * *
50971618 ATTTTAATATGATTATTATTAAATACAATTTAATAAAATAGTATATAATTAAATAAC
1 ATTTTAATATAATTATTATTAAATATAATTTAATAAAA-A-TAAATAATTAAATAAC
*
50971675 ATTCTTAATATAATAATTATTAAAATATGAA-TTAATAAAAAT
1 ATT-TTAATATAATTATTATT-AAATAT-AATTTAATAAAAAT
50971717 TATAATACAT
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
55 35 0.42
56 1 0.01
57 16 0.19
58 16 0.19
59 14 0.17
60 2 0.02
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (55 bp):
ATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAAATAATTAAATAAC
Found at i:50971910 original size:14 final size:14
Alignment explanation
Indices: 50971891--50971919 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
50971881 ACATTTAAAC
50971891 ATAATCTATATGTT
1 ATAATCTATATGTT
50971905 ATAATCTATATGTT
1 ATAATCTATATGTT
50971919 A
1 A
50971920 AATTTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (14 bp):
ATAATCTATATGTT
Found at i:50974832 original size:78 final size:82
Alignment explanation
Indices: 50974748--50974902 Score: 228
Period size: 78 Copynumber: 1.9 Consensus size: 82
50974738 AAAGCATTTA
*
50974748 AAAAAGAAAGAAAATGAAAAGCCAAAAGCTAACCACTC-A-C-TGA-TCATTTCCAAGAACGTCT
1 AAAAAGAAAGAAAATGAAAAGCCAAAAGATAACCACTCTAGCATGAGTCATTTCCAAGAACGTCT
50974809 TGGACAGATAAAACATT
66 TGGACAGATAAAACATT
* * *
50974826 AAAAAGAAATAAAATGAAAAGCCAATAGATAACCACTCTAGCAGATTAGTCATTTCCAAGAACGT
1 AAAAAGAAAGAAAATGAAAAGCCAAAAGATAACCACTCTAGC--ATGAGTCATTTCCAAGAACGT
50974891 CTTGGACAGATA
64 CTTGGACAGATA
50974903 TGCTCTTTAA
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
78 35 0.52
79 1 0.01
80 1 0.01
83 2 0.03
84 28 0.42
ACGTcount: A:0.48, C:0.18, G:0.15, T:0.19
Consensus pattern (82 bp):
AAAAAGAAAGAAAATGAAAAGCCAAAAGATAACCACTCTAGCATGAGTCATTTCCAAGAACGTCT
TGGACAGATAAAACATT
Found at i:50975283 original size:26 final size:26
Alignment explanation
Indices: 50975247--50975297 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
50975237 GTAAATACAA
50975247 CACATCTTGGAACTCTTCTTGTTCAG
1 CACATCTTGGAACTCTTCTTGTTCAG
*
50975273 CACATCTTGGAAGTCTTCTTGTTCA
1 CACATCTTGGAACTCTTCTTGTTCA
50975298 TAAATTCGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (26 bp):
CACATCTTGGAACTCTTCTTGTTCAG
Found at i:50976037 original size:101 final size:101
Alignment explanation
Indices: 50975859--50976064 Score: 349
Period size: 101 Copynumber: 2.0 Consensus size: 101
50975849 CAGGTAAAGC
* * * * *
50975859 TCTCAAACTCTAAAGATCTTTGTTTGATTTCTTGTATAATTACAGATATACTCGATCGATCGGGT
1 TCTCAAACCCTAAAGATCTTTGTTTGATTTCTTGTACAATTACAGATATACTCGATCAATCCGAT
50975924 TATTTGTAATTGATATTTTTTATTACTGTTAGGAAG
66 TATTTGTAATTGATATTTTTTATTACTGTTAGGAAG
*
50975960 TCTCAAACCCTAAAGATCTTTGTTTGATTTCTTGTACAATTACAGATATACTTGATCAATCCGAT
1 TCTCAAACCCTAAAGATCTTTGTTTGATTTCTTGTACAATTACAGATATACTCGATCAATCCGAT
*
50976025 TATTTGTCATTGATATTTTTTATTACTGTTAGGAAG
66 TATTTGTAATTGATATTTTTTATTACTGTTAGGAAG
50976061 TCTC
1 TCTC
50976065 CTTCAAGAAT
Statistics
Matches: 98, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 98 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (101 bp):
TCTCAAACCCTAAAGATCTTTGTTTGATTTCTTGTACAATTACAGATATACTCGATCAATCCGAT
TATTTGTAATTGATATTTTTTATTACTGTTAGGAAG
Found at i:50976631 original size:21 final size:19
Alignment explanation
Indices: 50976606--50976650 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
50976596 TTTAAAAATA
50976606 GCATTAAAAAAATTGACCGTT
1 GCATT-AAAAAA-TGACCGTT
*
50976627 GCATTAAATAATGACCGTT
1 GCATTAAAAAATGACCGTT
50976646 GCATT
1 GCATT
50976651 TACTGCTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 13 0.57
20 5 0.22
21 5 0.22
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (19 bp):
GCATTAAAAAATGACCGTT
Found at i:50979654 original size:7 final size:7
Alignment explanation
Indices: 50979644--50980408 Score: 212
Period size: 7 Copynumber: 110.3 Consensus size: 7
50979634 AAGTAAAATT
50979644 TTTGGGG
1 TTTGGGG
50979651 TTTGGGG
1 TTTGGGG
50979658 TTTGGGG
1 TTTGGGG
* *
50979665 TCTTGAGT
1 T-TTGGGG
50979673 TTTGGGG
1 TTTGGGG
*
50979680 TTTTGAGG
1 -TTTGGGG
50979688 TTTGAGGG
1 TTTG-GGG
* *
50979696 TTTTAGGC
1 -TTTGGGG
50979704 TTTGGGG
1 TTTGGGG
* *
50979711 CTTGAGG
1 TTTGGGG
50979718 -TTGGGG
1 TTTGGGG
50979724 TTTGGGG
1 TTTGGGG
*
50979731 CTTGGGG
1 TTTGGGG
50979738 TTTGGGG
1 TTTGGGG
* *
50979745 CTCGGGG
1 TTTGGGG
* *
50979752 CTCGGGG
1 TTTGGGG
* *
50979759 CTCGGGG
1 TTTGGGG
*
50979766 TTTTAGGGT
1 -TTT-GGGG
*
50979775 TTTGGTG
1 TTTGGGG
50979782 TTTGGGG
1 TTTGGGG
*
50979789 TTTCGGG
1 TTTGGGG
*
50979796 TTTCGGG
1 TTTGGGG
* *
50979803 TCTAGGG
1 TTTGGGG
50979810 TTTGGGG
1 TTTGGGG
*
50979817 TCTGGGG
1 TTTGGGG
*
50979824 TTTCGGG
1 TTTGGGG
*
50979831 TTTAGGG
1 TTTGGGG
*
50979838 TTTAGGG
1 TTTGGGG
*
50979845 TTTAGGG
1 TTTGGGG
*
50979852 TTTAGGG
1 TTTGGGG
50979859 -TT-GGG
1 TTTGGGG
*
50979864 TTTAGGG
1 TTTGGGG
*
50979871 TTTAGGG
1 TTTGGGG
*
50979878 TTTAGGG
1 TTTGGGG
*
50979885 TTTAGGG
1 TTTGGGG
*
50979892 TTTAGGG
1 TTTGGGG
*
50979899 TTTAGGG
1 TTTGGGG
*
50979906 TTTAGGG
1 TTTGGGG
*
50979913 TTTAGGG
1 TTTGGGG
*
50979920 TCT-GGG
1 TTTGGGG
*
50979926 TTTAGGG
1 TTTGGGG
*
50979933 TTTAGGG
1 TTTGGGG
*
50979940 TTTAGGG
1 TTTGGGG
*
50979947 TTCGGGG
1 TTTGGGG
*
50979954 TTCGGGG
1 TTTGGGG
* *
50979961 CTCGGGG
1 TTTGGGG
* *
50979968 CTCGGGG
1 TTTGGGG
* *
50979975 CTCGGGG
1 TTTGGGG
* *
50979982 CTCGGGG
1 TTTGGGG
* *
50979989 CTCGGGG
1 TTTGGGG
* *
50979996 CTCGGGG
1 TTTGGGG
* *
50980003 CTCGGGG
1 TTTGGGG
* *
50980010 CTCGGGG
1 TTTGGGG
* *
50980017 CTCGGGG
1 TTTGGGG
* *
50980024 CTCGGGG
1 TTTGGGG
* *
50980031 CTCGGGG
1 TTTGGGG
* *
50980038 -CTCGGG
1 TTTGGGG
* *
50980044 CTCGGGG
1 TTTGGGG
* *
50980051 CTCGGGG
1 TTTGGGG
* *
50980058 CTCGGGG
1 TTTGGGG
* *
50980065 CTCGGGG
1 TTTGGGG
* *
50980072 CTCGGGG
1 TTTGGGG
* *
50980079 CTCGGGG
1 TTTGGGG
* *
50980086 CTCGGGG
1 TTTGGGG
* *
50980093 CTCGGGG
1 TTTGGGG
* *
50980100 CTCGGGG
1 TTTGGGG
* *
50980107 CTCGGGG
1 TTTGGGG
* *
50980114 CTCGGGG
1 TTTGGGG
* *
50980121 CTCGGGG
1 TTTGGGG
* *
50980128 CTCGGGG
1 TTTGGGG
* *
50980135 CTCGGGG
1 TTTGGGG
* *
50980142 CTCGGGG
1 TTTGGGG
**
50980149 CTCGGGGGG
1 -T-TTGGGG
** *
50980158 GCTCGGG
1 TTTGGGG
* *
50980165 CTCGGGG
1 TTTGGGG
* *
50980172 CTCGGGG
1 TTTGGGG
* *
50980179 CTCGGGG
1 TTTGGGG
* *
50980186 CTCGGGG
1 TTTGGGG
* *
50980193 CTCGGGG
1 TTTGGGG
* *
50980200 -CTCGGG
1 TTTGGGG
*
50980206 -TTCGGG
1 TTTGGGG
*
50980212 TTCGG-G
1 TTTGGGG
*
50980218 TTTAGGG
1 TTTGGGG
*
50980225 TTTAGGG
1 TTTGGGG
*
50980232 TTTAGGG
1 TTTGGGG
*
50980239 TTTAGGG
1 TTTGGGG
*
50980246 TTTAGGG
1 TTTGGGG
50980253 -TT-GGG
1 TTTGGGG
*
50980258 TTTAGGG
1 TTTGGGG
50980265 TTTGGGG
1 TTTGGGG
50980272 TTTGGGG
1 TTTGGGG
50980279 TTTGGGG
1 TTTGGGG
50980286 TTTGGGG
1 TTTGGGG
*
50980293 TTTGGGT
1 TTTGGGG
*
50980300 TTTAGGG
1 TTTGGGG
50980307 TTTGGGG
1 TTTGGGG
*
50980314 -TT-AGG
1 TTTGGGG
50980319 TTTAGGGG
1 TTT-GGGG
*
50980327 -TT-AGG
1 TTTGGGG
*
50980332 TTT-AGG
1 TTTGGGG
*
50980338 TTT-AGG
1 TTTGGGG
50980344 TTTGGGG
1 TTTGGGG
50980351 TTTGGGG
1 TTTGGGG
50980358 TTTGGGG
1 TTTGGGG
50980365 TTTGGGG
1 TTTGGGG
50980372 TTTGGGG
1 TTTGGGG
50980379 TTTGGGG
1 TTTGGGG
50980386 TTTGGGG
1 TTTGGGG
50980393 TTTGGGG
1 TTTGGGG
50980400 TTTGGGG
1 TTTGGGG
50980407 TT
1 TT
50980409 GGG
Statistics
Matches: 665, Mismatches: 71, Indels: 44
0.85 0.09 0.06
Matches are distributed among these distances:
5 10 0.02
6 51 0.08
7 573 0.86
8 21 0.03
9 10 0.02
ACGTcount: A:0.04, C:0.12, G:0.51, T:0.33
Consensus pattern (7 bp):
TTTGGGG
Done.