Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 28 of 171
Found at i:12961481 original size:29 final size:29
Alignment explanation
Indices: 12961449--12961507 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
12961439 GGAAGTGAAA
12961449 TGTGGTGGTTTTGACGGAGTACGACTTCT
1 TGTGGTGGTTTTGACGGAGTACGACTTCT
12961478 TGTGGTGGTTTTGACGGAGTACGACTTCT
1 TGTGGTGGTTTTGACGGAGTACGACTTCT
12961507 T
1 T
12961508 TAGTTCGGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.14, C:0.14, G:0.34, T:0.39
Consensus pattern (29 bp):
TGTGGTGGTTTTGACGGAGTACGACTTCT
Found at i:12962376 original size:6 final size:6
Alignment explanation
Indices: 12962354--12962393 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
12962344 CTTTAAGAAA
* *
12962354 AATTAT AAATA- AATTAT AATTAT AATCAT AATTAT AATTA
1 AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT AATTA
12962394 AACAATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 4 0.14
6 25 0.86
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (6 bp):
AATTAT
Found at i:12963364 original size:29 final size:28
Alignment explanation
Indices: 12963292--12963365 Score: 73
Period size: 27 Copynumber: 2.6 Consensus size: 28
12963282 ATATTTATCT
*
12963292 TATATTATTTTAATATTTAATAATTCTA
1 TATATTATTTTAATATTAAATAATTCTA
* *
12963320 TAT-TT-TTTTATTTATTGAAATTATT-TA
1 TATATTATTTTA-ATATT-AAATAATTCTA
12963347 TATAGTTATTTTAATATTA
1 TATA-TTATTTTAATATTA
12963366 TTTTAATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
26 5 0.14
27 11 0.30
28 10 0.27
29 6 0.16
30 5 0.14
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (28 bp):
TATATTATTTTAATATTAAATAATTCTA
Found at i:12963378 original size:23 final size:22
Alignment explanation
Indices: 12963281--12963378 Score: 71
Period size: 23 Copynumber: 4.4 Consensus size: 22
12963271 TTTTTAAAAA
*
12963281 AATATTTATCTTATATTATTTT
1 AATATTTATTTTATATTATTTT
12963303 AATATTTAATAATTCTATATT-TTTT
1 AATATTT-AT--TT-TATATTATTTT
* *
12963328 --TATTTA-TTGAAATTA-TTT
1 AATATTTATTTTATATTATTTT
*
12963346 ATATAGTTATTTTAATATTATTTT
1 A-ATATTTATTTT-ATATTATTTT
12963370 AATATTTAT
1 AATATTTAT
12963379 ATTTGAGTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 21
0.67 0.08 0.24
Matches are distributed among these distances:
18 7 0.12
19 2 0.03
21 5 0.09
22 10 0.17
23 19 0.33
24 4 0.07
25 5 0.09
26 6 0.10
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
AATATTTATTTTATATTATTTT
Found at i:12964415 original size:19 final size:17
Alignment explanation
Indices: 12964384--12964418 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
12964374 CTTTTGTTTT
12964384 ATATTTTTCATTTTTCA
1 ATATTTTTCATTTTTCA
12964401 ATATTGTTTCTATTTTTC
1 ATATT-TTTC-ATTTTTC
12964419 TCTCCTTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 4 0.25
19 7 0.44
ACGTcount: A:0.20, C:0.11, G:0.03, T:0.66
Consensus pattern (17 bp):
ATATTTTTCATTTTTCA
Found at i:12974282 original size:11 final size:11
Alignment explanation
Indices: 12974266--12974311 Score: 56
Period size: 11 Copynumber: 3.9 Consensus size: 11
12974256 CATAATATTA
12974266 ATTATTTAAAT
1 ATTATTTAAAT
*
12974277 ATTATTTAAAAAA
1 ATTATTT--AAAT
12974290 ATTAATTTAAAT
1 ATT-ATTTAAAT
12974302 ATTATTTAAA
1 ATTATTTAAA
12974312 ATACATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
11 14 0.47
12 6 0.20
13 6 0.20
14 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
ATTATTTAAAT
Found at i:12974300 original size:25 final size:24
Alignment explanation
Indices: 12974265--12974312 Score: 87
Period size: 25 Copynumber: 2.0 Consensus size: 24
12974255 TCATAATATT
12974265 AATTATTTAAATATTATTTAAAAA
1 AATTATTTAAATATTATTTAAAAA
12974289 AATTAATTTAAATATTATTTAAAA
1 AATT-ATTTAAATATTATTTAAAA
12974313 TACATATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
AATTATTTAAATATTATTTAAAAA
Found at i:12979482 original size:23 final size:23
Alignment explanation
Indices: 12979456--12979509 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
12979446 TAACGCAAAT
* *
12979456 CAGTAGGCAAACAAGGTGCGAAA
1 CAGTAAGCAAACAAAGTGCGAAA
*
12979479 CAGTAAGCACACAAAGTGCGAAA
1 CAGTAAGCAAACAAAGTGCGAAA
*
12979502 CAATAAGC
1 CAGTAAGC
12979510 GCGCTAGCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.46, C:0.20, G:0.24, T:0.09
Consensus pattern (23 bp):
CAGTAAGCAAACAAAGTGCGAAA
Found at i:12981821 original size:23 final size:23
Alignment explanation
Indices: 12981747--12981937 Score: 148
Period size: 23 Copynumber: 8.5 Consensus size: 23
12981737 TAAACGGAAC
* * *
12981747 AAACAGAGAGTAC-CGAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
* *
12981769 AAACAAAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
12981791 GGGCAACAGAGAGCACACAAAGTGCT
1 ---AAACAGAGAGCACACAAAGTGCT
*
12981817 AAACAGAGAGTACACAAA--G-T
1 AAACAGAGAGCACACAAAGTGCT
*
12981837 --AC--TGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
12981856 AATCAGAGAGCACACGAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
12981879 AATCAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
12981902 AATAACAGAGAGCACACACAGTGCT
1 -A-AACAGAGAGCACACAAAGTGCT
*
12981927 AATCAGAGAGC
1 AAACAGAGAGC
12981938 GCGCTAGTGT
Statistics
Matches: 137, Mismatches: 18, Indels: 27
0.75 0.10 0.15
Matches are distributed among these distances:
16 10 0.07
18 3 0.02
19 1 0.01
20 1 0.01
21 2 0.01
22 17 0.12
23 61 0.45
24 2 0.01
25 33 0.24
26 7 0.05
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.12
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:12981845 original size:39 final size:39
Alignment explanation
Indices: 12981801--12981875 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
12981791 GGGCAACAGA
*
12981801 GAGCACACAAAGTGCTAAACAGAGAGTACACAAAGTACT
1 GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGTACT
* *
12981840 GAGCACACAAAGTGCTAATCAGAGAGCACACGAAGT
1 GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGT
12981876 GCTAATCAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (39 bp):
GAGCACACAAAGTGCTAAACAGAGAGCACACAAAGTACT
Found at i:12981894 original size:25 final size:23
Alignment explanation
Indices: 12981840--12981937 Score: 153
Period size: 23 Copynumber: 4.2 Consensus size: 23
12981830 ACAAAGTACT
*
12981840 GAGCACACAAAGTGCTAATCAGA
1 GAGCACACACAGTGCTAATCAGA
12981863 GAGCACACGA-AGTGCTAATCAGA
1 GAGCACAC-ACAGTGCTAATCAGA
12981886 GAGCACACACAGTGCTAATAACAGA
1 GAGCACACACAGTGCTAAT--CAGA
12981911 GAGCACACACAGTGCTAATCAGA
1 GAGCACACACAGTGCTAATCAGA
12981934 GAGC
1 GAGC
12981938 GCGCTAGTGT
Statistics
Matches: 71, Mismatches: 0, Indels: 8
0.90 0.00 0.10
Matches are distributed among these distances:
22 1 0.01
23 46 0.65
24 1 0.01
25 23 0.32
ACGTcount: A:0.41, C:0.23, G:0.23, T:0.12
Consensus pattern (23 bp):
GAGCACACACAGTGCTAATCAGA
Found at i:12981914 original size:48 final size:46
Alignment explanation
Indices: 12981840--12981937 Score: 153
Period size: 48 Copynumber: 2.1 Consensus size: 46
12981830 ACAAAGTACT
12981840 GAGCACACAAAGTGCTAATCAGAGAGCACACGA-AGTGCTAATCAGA
1 GAGCACACAAAGTGCTAATCAGAGAGCACAC-ACAGTGCTAATCAGA
*
12981886 GAGCACACACAGTGCTAATAACAGAGAGCACACACAGTGCTAATCAGA
1 GAGCACACAAAGTGCTAAT--CAGAGAGCACACACAGTGCTAATCAGA
12981934 GAGC
1 GAGC
12981938 GCGCTAGTGT
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
46 18 0.38
47 1 0.02
48 29 0.60
ACGTcount: A:0.41, C:0.23, G:0.23, T:0.12
Consensus pattern (46 bp):
GAGCACACAAAGTGCTAATCAGAGAGCACACACAGTGCTAATCAGA
Found at i:12985874 original size:19 final size:20
Alignment explanation
Indices: 12985836--12985875 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
12985826 ATTGTTACTC
* *
12985836 AAAAATGTTTTTGAATCAAA
1 AAAAATATTTTTGAAGCAAA
12985856 AAAAATATTTTTG-AGCAAA
1 AAAAATATTTTTGAAGCAAA
12985875 A
1 A
12985876 GTTAAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.33
Consensus pattern (20 bp):
AAAAATATTTTTGAAGCAAA
Found at i:12986995 original size:23 final size:24
Alignment explanation
Indices: 12986957--12987006 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
12986947 TAAAATAAAT
12986957 AATGTTGAGATAAAAATATAATTA
1 AATGTTGAGATAAAAATATAATTA
12986981 AATGTTGAGATAAAAATATAATTA
1 AATGTTGAGATAAAAATATAATTA
12987005 AA
1 AA
12987007 ATTTTACTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (24 bp):
AATGTTGAGATAAAAATATAATTA
Found at i:12987429 original size:6 final size:6
Alignment explanation
Indices: 12987418--12987442 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
12987408 AGTTGAATTG
12987418 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
12987443 CCAAGGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:12999758 original size:129 final size:127
Alignment explanation
Indices: 12999526--12999785 Score: 425
Period size: 129 Copynumber: 2.0 Consensus size: 127
12999516 GGTAAAAATA
*
12999526 AAGG-AAATTAAAAAGAACTTCAATCGAGCAGCGTTTTATACCTATTACTTTAAAAAAATGTGTG
1 AAGGAAAATTAAAAAGAACTTCAATCAAGCAGCGTTTTATACCTATTACTTTAAAAAAATGTGTG
12999590 CCTAGGTGCACCAAGAGTGCGCCTGATCAAATGAGTTTGAAGCACTTTTGTTGTCTAGTGCT
66 CCTAGGTGCACCAAGAGTGCGCCTGATCAAATGAGTTTGAAGCACTTTTGTTGTCTAGTGCT
* * *
12999652 AAGGAAAATTAAAAAGAACTTTAATCAAGCAGCCTTTTCTTATACCTATTGCTTT-AAAAAATGT
1 AAGGAAAATTAAAAAGAACTTCAATCAAGCAG-C-GTT-TTATACCTATTACTTTAAAAAAATGT
* *
12999716 GTGCCTAGGTGCACCAAGTGTGCGCTTGATCAAATGAGTTTGAAGCACTTTTGTTGTCTAGTGCT
63 GTGCCTAGGTGCACCAAGAGTGCGCCTGATCAAATGAGTTTGAAGCACTTTTGTTGTCTAGTGCT
12999781 AAGGA
1 AAGGA
12999786 CAAGCACATC
Statistics
Matches: 124, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
126 4 0.03
127 25 0.20
128 1 0.01
129 79 0.64
130 15 0.12
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (127 bp):
AAGGAAAATTAAAAAGAACTTCAATCAAGCAGCGTTTTATACCTATTACTTTAAAAAAATGTGTG
CCTAGGTGCACCAAGAGTGCGCCTGATCAAATGAGTTTGAAGCACTTTTGTTGTCTAGTGCT
Found at i:13002703 original size:19 final size:21
Alignment explanation
Indices: 13002679--13002727 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
13002669 TTTTTATTCG
13002679 AAAAATATT-AAATTT-AAAT
1 AAAAATATTAAAATTTAAAAT
*
13002698 AAAAATTTTAAAATTTAAAAT
1 AAAAATATTAAAATTTAAAAT
*
13002719 AAAATTATT
1 AAAAATATT
13002728 GATGTGACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 8 0.32
20 6 0.24
21 11 0.44
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
AAAAATATTAAAATTTAAAAT
Found at i:13003580 original size:23 final size:22
Alignment explanation
Indices: 13003533--13003580 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
13003523 AAAAGAACAT
*
13003533 AAAAGAAAAAAATTAAATTGCTC
1 AAAAGAAAAAAATTAAA-TGATC
13003556 AAAATGAAAAAAATATAAA-GATC
1 AAAA-GAAAAAAAT-TAAATGATC
13003579 AA
1 AA
13003581 TTGTAAGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 9 0.41
24 9 0.41
25 4 0.18
ACGTcount: A:0.67, C:0.06, G:0.08, T:0.19
Consensus pattern (22 bp):
AAAAGAAAAAAATTAAATGATC
Found at i:13004314 original size:21 final size:21
Alignment explanation
Indices: 13004272--13004314 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
13004262 ACATTTTCTA
*
13004272 AAGTTAAAAGTCAGAATCATT
1 AAGTTAAAAGTCAAAATCATT
*
13004293 AAGTTAAAAAGT-AAAATTATT
1 AAGTT-AAAAGTCAAAATCATT
13004314 A
1 A
13004315 TATTGTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.30
Consensus pattern (21 bp):
AAGTTAAAAGTCAAAATCATT
Found at i:13004500 original size:14 final size:14
Alignment explanation
Indices: 13004477--13004537 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
13004467 TAAAAATATA
13004477 AAAATCTAAATTAAT
1 AAAAT-TAAATTAAT
* *
13004492 GAAATTAAAAT-AT
1 AAAATTAAATTAAT
13004505 AAAATTTAAATTAAT
1 AAAA-TTAAATTAAT
* *
13004520 CAAATTAAAAT-AT
1 AAAATTAAATTAAT
13004533 AAAAT
1 AAAAT
13004538 CTATATTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
13 11 0.30
14 17 0.46
15 9 0.24
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (14 bp):
AAAATTAAATTAAT
Found at i:13004516 original size:28 final size:28
Alignment explanation
Indices: 13004469--13004540 Score: 117
Period size: 28 Copynumber: 2.5 Consensus size: 28
13004459 CAAATATTTA
*
13004469 AAAATATAAAAATCTAAATTAATGAAATT
1 AAAATAT-AAAATCTAAATTAATCAAATT
*
13004498 AAAATATAAAATTTAAATTAATCAAATT
1 AAAATATAAAATCTAAATTAATCAAATT
13004526 AAAATATAAAATCTA
1 AAAATATAAAATCTA
13004541 TATTCACAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.82
29 7 0.17
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (28 bp):
AAAATATAAAATCTAAATTAATCAAATT
Found at i:13004863 original size:7 final size:7
Alignment explanation
Indices: 13004851--13004875 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
13004841 TTTTTAATGA
13004851 AAAATTT
1 AAAATTT
13004858 AAAATTT
1 AAAATTT
13004865 AAAATTT
1 AAAATTT
13004872 AAAA
1 AAAA
13004876 ACGTTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
AAAATTT
Found at i:13005684 original size:19 final size:20
Alignment explanation
Indices: 13005646--13005690 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
13005636 GAATTAAATC
* *
13005646 AAATCAAAATTTCATGTATA
1 AAATTAAAATTTCATATATA
13005666 AAATTAAAA-TTCATATATA
1 AAATTAAAATTTCATATATA
*
13005685 CAATTA
1 AAATTA
13005691 CATATTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.36
Consensus pattern (20 bp):
AAATTAAAATTTCATATATA
Found at i:13009380 original size:49 final size:49
Alignment explanation
Indices: 13009308--13009406 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 49
13009298 GGTGTTTCAA
* *
13009308 AAATTTAAAGGCTACTGCTAAAACTAACCATCATTTTCGTTAGTCTATT
1 AAATTTAAAGGCTACTGCTAAAACTAACCATCATTTCCGTTAATCTATT
*
13009357 AAATTTAAAGGTTACTGCTAAAACTAACCATCATTTCCGTTAATCTATT
1 AAATTTAAAGGCTACTGCTAAAACTAACCATCATTTCCGTTAATCTATT
13009406 A
1 A
13009407 GCATTTTTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (49 bp):
AAATTTAAAGGCTACTGCTAAAACTAACCATCATTTCCGTTAATCTATT
Found at i:13009893 original size:14 final size:14
Alignment explanation
Indices: 13009874--13009903 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
13009864 GGGTGGTTGC
*
13009874 AAACCAAACTGTCA
1 AAACCAAACTATCA
13009888 AAACCAAACTATCA
1 AAACCAAACTATCA
13009902 AA
1 AA
13009904 GTGGATACAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.27, G:0.03, T:0.13
Consensus pattern (14 bp):
AAACCAAACTATCA
Found at i:13013008 original size:3 final size:3
Alignment explanation
Indices: 13012981--13013053 Score: 55
Period size: 3 Copynumber: 25.0 Consensus size: 3
13012971 AGGATGCGTT
* * * * *
13012981 TAA TTA TAA TTAA T-A TAA AAA TAA TAA TAA CAG TAA -AA TTA -AA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13013024 TAA T-A TAA TAA TATA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
13013054 AGAGTTAACA
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
2 7 0.13
3 41 0.76
4 6 0.11
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:13018907 original size:17 final size:17
Alignment explanation
Indices: 13018870--13018907 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
13018860 CAAATAATTT
13018870 AAAAATTAAAAATATTC
1 AAAAATTAAAAATATTC
* *
13018887 AAAATTTAAAAA-GTTC
1 AAAAATTAAAAATATTC
13018903 AAAAA
1 AAAAA
13018908 GTTCAAAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (17 bp):
AAAAATTAAAAATATTC
Found at i:13019784 original size:2 final size:2
Alignment explanation
Indices: 13019777--13019805 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
13019767 TGGTCTCAAT
13019777 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13019806 TGTTCTCGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13028827 original size:14 final size:13
Alignment explanation
Indices: 13028800--13028833 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
13028790 TAGAAAAATA
*
13028800 TTAGAGTATTTTT
1 TTAGGGTATTTTT
13028813 TTAGGGTATTTTT
1 TTAGGGTATTTTT
13028826 TTAGGGTA
1 TTAGGGTA
13028834 AATTACAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.56
Consensus pattern (13 bp):
TTAGGGTATTTTT
Found at i:13029066 original size:18 final size:18
Alignment explanation
Indices: 13029043--13029085 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
13029033 GATAGATTTT
13029043 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
*
13029061 TTAATTAAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
13029079 TTAATTA
1 TTAATTA
13029086 CATCTTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:13037969 original size:18 final size:19
Alignment explanation
Indices: 13037919--13037969 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
13037909 TTTTTATCTA
*
13037919 TTAACATTTGTTTGATCCG
1 TTAACACTTGTTTGATCCG
*
13037938 TTAACACTTGTTTGATCTG
1 TTAACACTTGTTTGATCCG
*
13037957 TTAATAC-TGTTTG
1 TTAACACTTGTTTG
13037970 GGATTTGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 6 0.21
19 23 0.79
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.49
Consensus pattern (19 bp):
TTAACACTTGTTTGATCCG
Found at i:13037978 original size:29 final size:29
Alignment explanation
Indices: 13037945--13038004 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
13037935 CCGTTAACAC
* *
13037945 TTGTTTGATCTGTTAATACTGTTTGGGAT
1 TTGTTTGATCTATTAACACTGTTTGGGAT
*
13037974 TTGTTTGATTTATTAACACTGTTTGGGAT
1 TTGTTTGATCTATTAACACTGTTTGGGAT
13038003 TT
1 TT
13038005 AAGGTTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.18, C:0.07, G:0.22, T:0.53
Consensus pattern (29 bp):
TTGTTTGATCTATTAACACTGTTTGGGAT
Found at i:13038120 original size:13 final size:13
Alignment explanation
Indices: 13038102--13038131 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
13038092 TTACAGATAC
13038102 ATATGCTCTATAT
1 ATATGCTCTATAT
13038115 ATATGCTCTATAT
1 ATATGCTCTATAT
13038128 ATAT
1 ATAT
13038132 TGCCTAGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (13 bp):
ATATGCTCTATAT
Found at i:13040220 original size:11 final size:11
Alignment explanation
Indices: 13040196--13040245 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
13040186 TTTTGTTAGT
* *
13040196 TTTATGATGAC
1 TTTATGTTGGC
13040207 TTTATGTCT-GC
1 TTTATGT-TGGC
13040218 TTTATGTTGGC
1 TTTATGTTGGC
13040229 TTTAATGTTGGC
1 TTT-ATGTTGGC
13040241 TTTAT
1 TTTAT
13040246 ATTGAATGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 1 0.03
11 21 0.62
12 12 0.35
ACGTcount: A:0.16, C:0.10, G:0.20, T:0.54
Consensus pattern (11 bp):
TTTATGTTGGC
Found at i:13040238 original size:12 final size:12
Alignment explanation
Indices: 13040216--13040244 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
13040206 CTTTATGTCT
13040216 GCTTT-ATGTTG
1 GCTTTAATGTTG
13040227 GCTTTAATGTTG
1 GCTTTAATGTTG
13040239 GCTTTA
1 GCTTTA
13040245 TATTGAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.14, C:0.10, G:0.24, T:0.52
Consensus pattern (12 bp):
GCTTTAATGTTG
Found at i:13042384 original size:23 final size:23
Alignment explanation
Indices: 13042358--13042478 Score: 156
Period size: 23 Copynumber: 5.2 Consensus size: 23
13042348 ACACTAGCGC
13042358 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* *
13042381 GCTCTCTGTTTAGCAC-GTCTTGT
1 GCTCTCTGATTAGCACTGT-GTGT
13042404 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG--ATTAGCACTGTGTGT
*
13042429 GCTCTCCGATTAGCACT-TCGTGT
1 GCTCTCTGATTAGCACTGT-GTGT
*
13042452 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
13042475 GCTC
1 GCTC
13042479 AGTACTTTGT
Statistics
Matches: 86, Mismatches: 6, Indels: 12
0.83 0.06 0.12
Matches are distributed among these distances:
22 3 0.03
23 63 0.73
24 1 0.01
25 17 0.20
26 2 0.02
ACGTcount: A:0.12, C:0.25, G:0.23, T:0.40
Consensus pattern (23 bp):
GCTCTCTGATTAGCACTGTGTGT
Found at i:13042427 original size:48 final size:46
Alignment explanation
Indices: 13042358--13042478 Score: 179
Period size: 48 Copynumber: 2.6 Consensus size: 46
13042348 ACACTAGCGC
* * *
13042358 GCTCTCTGATTAGCACTGTGTGTGCTCTCTGTTTAGCACGTCTTGT
1 GCTCTCTGATTAGCACTGTGTGTGCTCTCCGATTAGCACGTCGTGT
*
13042404 GCTCTCTGTTATTAGCACTGTGTGTGCTCTCCGATTAGCACTTCGTGT
1 GCTCTCTG--ATTAGCACTGTGTGTGCTCTCCGATTAGCACGTCGTGT
*
13042452 GCTCTCTGATTAGCACTTTGTGTGCTC
1 GCTCTCTGATTAGCACTGTGTGTGCTC
13042479 AGTACTTTGT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
46 26 0.38
48 42 0.62
ACGTcount: A:0.12, C:0.25, G:0.23, T:0.40
Consensus pattern (46 bp):
GCTCTCTGATTAGCACTGTGTGTGCTCTCCGATTAGCACGTCGTGT
Found at i:13042507 original size:39 final size:39
Alignment explanation
Indices: 13042443--13042517 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
13042433 TCCGATTAGC
*
13042443 ACTTCGTGTGCTCTCTGATTAGCACTTTGTGTGCTCAGT
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAGT
* *
13042482 ACTTTGTGTACTCTCTGTTTAGCACTTTGTGTGCTC
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTC
13042518 TCTATTGCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (39 bp):
ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAGT
Found at i:13042512 original size:23 final size:23
Alignment explanation
Indices: 13042477--13042570 Score: 77
Period size: 23 Copynumber: 4.0 Consensus size: 23
13042467 CTTTGTGTGC
*
13042477 TCAGTACTTTGTGTACTCTCTGT
1 TCAGCACTTTGTGTACTCTCTGT
* * *
13042500 TTAGCACTTTGTGTGCTCTCTAT
1 TCAGCACTTTGTGTACTCTCTGT
13042523 TGCCCAGCACTTATGTG--CTCTCTGT
1 T---CAGCACTT-TGTGTACTCTCTGT
* *
13042548 TCAGTACTTCG-GTACTCTCTGT
1 TCAGCACTTTGTGTACTCTCTGT
13042570 T
1 T
13042571 TGTTCCGTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 16 0.28
23 20 0.35
25 8 0.14
26 7 0.12
27 4 0.07
ACGTcount: A:0.13, C:0.26, G:0.18, T:0.44
Consensus pattern (23 bp):
TCAGCACTTTGTGTACTCTCTGT
Found at i:13048833 original size:23 final size:23
Alignment explanation
Indices: 13048807--13048927 Score: 156
Period size: 23 Copynumber: 5.2 Consensus size: 23
13048797 ACACTAGCGC
13048807 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* *
13048830 GCTCTCTGTTTAGCAC-GTCTCGT
1 GCTCTCTGATTAGCACTGTGT-GT
13048853 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG--ATTAGCACTGTGTGT
*
13048878 GCTCTCCGATTAGCACT-TCGTGT
1 GCTCTCTGATTAGCACTGT-GTGT
*
13048901 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
13048924 GCTC
1 GCTC
13048928 AGTACTTTGT
Statistics
Matches: 86, Mismatches: 6, Indels: 12
0.83 0.06 0.12
Matches are distributed among these distances:
22 4 0.05
23 62 0.72
24 1 0.01
25 16 0.19
26 3 0.03
ACGTcount: A:0.12, C:0.26, G:0.23, T:0.40
Consensus pattern (23 bp):
GCTCTCTGATTAGCACTGTGTGT
Found at i:13048876 original size:48 final size:46
Alignment explanation
Indices: 13048807--13048927 Score: 172
Period size: 48 Copynumber: 2.6 Consensus size: 46
13048797 ACACTAGCGC
* *
13048807 GCTCTCTGATTAGCACTGTGTGTGCTCTCTGTTTAGCACGTC-TCGT
1 GCTCTCTGATTAGCACTGTGTGTGCTCTCCGATTAGCACGTCGT-GT
*
13048853 GCTCTCTGTTATTAGCACTGTGTGTGCTCTCCGATTAGCACTTCGTGT
1 GCTCTCTG--ATTAGCACTGTGTGTGCTCTCCGATTAGCACGTCGTGT
*
13048901 GCTCTCTGATTAGCACTTTGTGTGCTC
1 GCTCTCTGATTAGCACTGTGTGTGCTC
13048928 AGTACTTTGT
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
46 26 0.38
48 41 0.60
49 1 0.01
ACGTcount: A:0.12, C:0.26, G:0.23, T:0.40
Consensus pattern (46 bp):
GCTCTCTGATTAGCACTGTGTGTGCTCTCCGATTAGCACGTCGTGT
Found at i:13048956 original size:39 final size:39
Alignment explanation
Indices: 13048892--13048966 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
13048882 TCCGATTAGC
*
13048892 ACTTCGTGTGCTCTCTGATTAGCACTTTGTGTGCTCAGT
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAGT
* *
13048931 ACTTTGTGTACTCTCTGTTTAGCACTTTGTGTGCTC
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTC
13048967 TCTGTTGCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (39 bp):
ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAGT
Found at i:13048961 original size:23 final size:23
Alignment explanation
Indices: 13048926--13049019 Score: 86
Period size: 23 Copynumber: 4.0 Consensus size: 23
13048916 CTTTGTGTGC
*
13048926 TCAGTACTTTGTGTACTCTCTGT
1 TCAGCACTTTGTGTACTCTCTGT
* *
13048949 TTAGCACTTTGTGTGCTCTCTGT
1 TCAGCACTTTGTGTACTCTCTGT
13048972 TGCCCAGCACTTATGTG--CTCTCTGT
1 T---CAGCACTT-TGTGTACTCTCTGT
* *
13048997 TCAGTACTTCG-GTACTCTCTGT
1 TCAGCACTTTGTGTACTCTCTGT
13049019 T
1 T
13049020 TGTTCCGTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 16 0.27
23 21 0.36
25 9 0.15
26 7 0.12
27 4 0.07
ACGTcount: A:0.12, C:0.26, G:0.19, T:0.44
Consensus pattern (23 bp):
TCAGCACTTTGTGTACTCTCTGT
Found at i:13050567 original size:23 final size:22
Alignment explanation
Indices: 13050470--13050591 Score: 102
Period size: 23 Copynumber: 5.4 Consensus size: 22
13050460 AGTGCTAGGG
* *
13050470 AAACAGTAAGCACACACAGGGC
1 AAACAGTAGGCACACACAGTGC
*
13050492 AATCCAGTAGGCACACACAGTGC
1 AA-ACAGTAGGCACACACAGTGC
* * * *
13050515 AATCAGTAGGCGCACATAGCGC
1 AAACAGTAGGCACACACAGTGC
13050537 AAATCAGTAGGCACACA-AGGTGC
1 AAA-CAGTAGGCACACACA-GTGC
* * *
13050560 GAAACAGTAAGCACACAAAGTAC
1 -AAACAGTAGGCACACACAGTGC
13050583 GAAACAGTA
1 -AAACAGTA
13050592 AGCGCGCTAG
Statistics
Matches: 83, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
22 21 0.25
23 58 0.70
24 4 0.05
ACGTcount: A:0.42, C:0.25, G:0.23, T:0.11
Consensus pattern (22 bp):
AAACAGTAGGCACACACAGTGC
Found at i:13052688 original size:24 final size:21
Alignment explanation
Indices: 13052633--13052682 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
13052623 GTGAGGACCC
13052633 CAACTCAGCAAGTGAGCAGCA
1 CAACTCAGCAAGTGAGCAGCA
*
13052654 CATCTCAGCAAGTGAGCAGCA
1 CAACTCAGCAAGTGAGCAGCA
13052675 CAACTCAG
1 CAACTCAG
13052683 TTGCAAATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.36, C:0.30, G:0.22, T:0.12
Consensus pattern (21 bp):
CAACTCAGCAAGTGAGCAGCA
Found at i:13052865 original size:12 final size:12
Alignment explanation
Indices: 13052838--13052872 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
13052828 ATTGTTGTTC
*
13052838 TGAACTATTT-T
1 TGAACTTTTTGT
13052849 TGAACTTTTTGT
1 TGAACTTTTTGT
13052861 TGAACTTTTTGT
1 TGAACTTTTTGT
13052873 AAAGTTTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.20, C:0.09, G:0.14, T:0.57
Consensus pattern (12 bp):
TGAACTTTTTGT
Found at i:13053175 original size:13 final size:12
Alignment explanation
Indices: 13053156--13053186 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
13053146 ACTTTTTGTA
13053156 AAGTTTCCTATC
1 AAGTTTCCTATC
13053168 ACAGTTTCCTATC
1 A-AGTTTCCTATC
13053181 AAGTTT
1 AAGTTT
13053187 GGCAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.42
Consensus pattern (12 bp):
AAGTTTCCTATC
Found at i:13053508 original size:16 final size:16
Alignment explanation
Indices: 13053487--13053519 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
13053477 ACTAGCAGCA
*
13053487 ATGAGAAGTAACAACC
1 ATGAGAAGCAACAACC
13053503 ATGAGAAGCAACAACC
1 ATGAGAAGCAACAACC
13053519 A
1 A
13053520 ACAAAATTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.21, G:0.18, T:0.09
Consensus pattern (16 bp):
ATGAGAAGCAACAACC
Found at i:13053858 original size:3 final size:3
Alignment explanation
Indices: 13053850--13053914 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
13053840 AATCTCCATT
13053850 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
13053898 TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TT
13053915 TTTATGCCCT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:13059828 original size:25 final size:26
Alignment explanation
Indices: 13059773--13059828 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
13059763 TTTTAATATG
* * * *
13059773 GTATTGTTTTTTTTTTACAATTTTTA
1 GTATTATTTTTTTTATAAAATTTATA
13059799 GTATTATTTTTTTTATAAAATTTATA
1 GTATTATTTTTTTTATAAAATTTATA
13059825 -TATT
1 GTATT
13059829 TTAATATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (26 bp):
GTATTATTTTTTTTATAAAATTTATA
Found at i:13059838 original size:28 final size:29
Alignment explanation
Indices: 13059807--13059865 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
13059797 TAGTATTATT
*
13059807 TTTTTTATAA-AAT-TTATATATTTTAATA
1 TTTTTAATAATAATGTTA-ATATTTTAATA
*
13059835 -TTTTAATAATAATGTTAATTTTTTAATA
1 TTTTTAATAATAATGTTAATATTTTAATA
13059863 TTT
1 TTT
13059866 AATTTAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
27 8 0.31
28 13 0.50
29 5 0.19
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (29 bp):
TTTTTAATAATAATGTTAATATTTTAATA
Found at i:13059872 original size:20 final size:19
Alignment explanation
Indices: 13059828--13059877 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
13059818 ATTTATATAT
*
13059828 TTTAATATTTTAATAATAA
1 TTTAATTTTTTAATAATAA
*
13059847 TGTTAATTTTTTAATATTTAA
1 T-TTAATTTTTTAATA-ATAA
13059868 TTTAAATTTT
1 TTT-AATTTT
13059878 GAGGTTGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 15 0.58
21 10 0.38
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTAATTTTTTAATAATAA
Found at i:13064542 original size:2 final size:2
Alignment explanation
Indices: 13064535--13064560 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13064525 CCAGTTACAC
13064535 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
13064561 GGATTGGTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13077418 original size:21 final size:19
Alignment explanation
Indices: 13077386--13077424 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
13077376 TTATATCAAT
*
13077386 TTAATCATAATTTTATAAAA
1 TTAATCA-AAATTTATAAAA
13077406 TTAACTCAAAATTTATAAA
1 TTAA-TCAAAATTTATAAA
13077425 TAATATTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (19 bp):
TTAATCAAAATTTATAAAA
Found at i:13078974 original size:18 final size:19
Alignment explanation
Indices: 13078933--13078975 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
13078923 ATCAAAACTT
13078933 TATTTTAATATTTTTTACA
1 TATTTTAATATTTTTTACA
* *
13078952 CATTTTAAT-TTTTTTATA
1 TATTTTAATATTTTTTACA
13078970 TATTTT
1 TATTTT
13078976 TTAATGCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (19 bp):
TATTTTAATATTTTTTACA
Found at i:13083432 original size:39 final size:37
Alignment explanation
Indices: 13083313--13083438 Score: 119
Period size: 39 Copynumber: 3.3 Consensus size: 37
13083303 TTTAGAGATG
* **
13083313 ATAATTTTTATAAATTTTTTTACGAAATTTATATTTCT
1 ATAATTTTTATAAATTTTTTTATGATTTTTATATTT-T
* * * *
13083351 TTACATTTTGTAT-AATTTTCTTATGACTTTATAAATTTT
1 ATA-ATTTT-TATAAATTTTTTTATGA-TTTTTATATTTT
*
13083390 ATAATTTTTTTAAATATTTTTTATGATTTTTATATTTGT
1 ATAATTTTTATAAAT-TTTTTTATGATTTTTATATTT-T
13083429 ATAATTTTTA
1 ATAATTTTTA
13083439 ATAATTGATT
Statistics
Matches: 69, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
37 2 0.03
38 19 0.28
39 38 0.55
40 10 0.14
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (37 bp):
ATAATTTTTATAAATTTTTTTATGATTTTTATATTTT
Found at i:13083711 original size:90 final size:89
Alignment explanation
Indices: 13083548--13083759 Score: 354
Period size: 90 Copynumber: 2.4 Consensus size: 89
13083538 TAAATAAGTC
* * * *
13083548 TGAGGGTTTTTTTCATATATTTTAAAAGTTCAAGTACCTATTGAGTGTAAAAAAAAAGTAGGAAC
1 TGAGGGTCTTTTTAATGTATTTTAAAAGTTCAAGTACCTATTGAATGTAAAAAAAAAGTAGGAAC
13083613 TTAACTGCTTTTTCTGAAAAGATT
66 TTAACTGCTTTTTCTGAAAAGATT
13083637 TGAGGGTCTTTTTAATGTATTTTAAAAGTTCAAGTACCTATTGAATGCATAAAAAAAAA-TAGGA
1 TGAGGGTCTTTTTAATGTATTTTAAAAGTTCAAGTACCTATTGAATG--TAAAAAAAAAGTAGGA
*
13083701 ACTTAACTGCTTTTTCTGAAAAGGTT
64 ACTTAACTGCTTTTTCTGAAAAGATT
13083727 TGAGGGTCTTTTTAATGTATTTTAAAAGTTCAA
1 TGAGGGTCTTTTTAATGTATTTTAAAAGTTCAA
13083760 ATATCCAATT
Statistics
Matches: 116, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
89 43 0.37
90 63 0.54
91 10 0.09
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (89 bp):
TGAGGGTCTTTTTAATGTATTTTAAAAGTTCAAGTACCTATTGAATGTAAAAAAAAAGTAGGAAC
TTAACTGCTTTTTCTGAAAAGATT
Found at i:13084560 original size:23 final size:23
Alignment explanation
Indices: 13084521--13084588 Score: 93
Period size: 23 Copynumber: 2.9 Consensus size: 23
13084511 ATTTTTTTAG
13084521 TTTTTATTTGCCTTTGTGGCACGT
1 TTTTTATTTGCC-TTGTGGCACGT
*
13084545 TTTTTATTTGTCTTGTGGCACGT
1 TTTTTATTTGCCTTGTGGCACGT
*
13084568 TTTTCT-TCTGCCTTGTGGCAC
1 TTTT-TATTTGCCTTGTGGCAC
13084589 ACCTCTGTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
23 28 0.70
24 12 0.30
ACGTcount: A:0.07, C:0.19, G:0.21, T:0.53
Consensus pattern (23 bp):
TTTTTATTTGCCTTGTGGCACGT
Found at i:13085205 original size:17 final size:19
Alignment explanation
Indices: 13085183--13085219 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
13085173 AACACTAATT
13085183 AAATGATAA-T-TAATTTA
1 AAATGATAAGTATAATTTA
13085200 AAATGATAAGTATAATTTA
1 AAATGATAAGTATAATTTA
13085219 A
1 A
13085220 TATGGATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 1 0.06
19 8 0.44
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (19 bp):
AAATGATAAGTATAATTTA
Found at i:13085729 original size:2 final size:2
Alignment explanation
Indices: 13085722--13085748 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13085712 TAATAAATAA
13085722 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
13085749 AGTTAGTGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13090688 original size:3 final size:3
Alignment explanation
Indices: 13090672--13090713 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
13090662 GGAAGAAGGT
* * *
13090672 GAA GGA GAA G-A GAA GAA GAA GAA GAA AAA GAA GGA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
13090714 GGACTGAAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:13096776 original size:24 final size:25
Alignment explanation
Indices: 13096732--13096780 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 25
13096722 ATTTTTAACG
13096732 AAAATTATTAAAAATTTTATATAAAAT
1 AAAATTATTAAAAA--TTATATAAAAT
13096759 AAAATTATTAAAAA-TATATAAA
1 AAAATTATTAAAAATTATATAAA
13096781 TTATTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 8 0.36
27 14 0.64
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (25 bp):
AAAATTATTAAAAATTATATAAAAT
Found at i:13106154 original size:21 final size:21
Alignment explanation
Indices: 13106108--13106154 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
13106098 GTATTGGTTT
* **
13106108 TATT-ATTTTTTTTAAATTTA
1 TATTAATTTTTTTAAAAAATA
13106128 TATTAATTTTTTTAAAAAATA
1 TATTAATTTTTTTAAAAAATA
*
13106149 TGTTAA
1 TATTAA
13106155 ACTATAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TATTAATTTTTTTAAAAAATA
Found at i:13111139 original size:35 final size:36
Alignment explanation
Indices: 13111094--13111169 Score: 118
Period size: 35 Copynumber: 2.1 Consensus size: 36
13111084 GTTGAGAGAT
*
13111094 TGAAATGTTAACCTGATGACTATTTGTTTAGGAAAA
1 TGAAATGTTAACCCGATGACTATTTGTTTAGGAAAA
* *
13111130 TGAAA-GTTAACCCGGTGACTGTTTGTTTAGGAAAA
1 TGAAATGTTAACCCGATGACTATTTGTTTAGGAAAA
13111165 TGAAA
1 TGAAA
13111170 ATTGGGTGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
35 32 0.86
36 5 0.14
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (36 bp):
TGAAATGTTAACCCGATGACTATTTGTTTAGGAAAA
Found at i:13111178 original size:31 final size:32
Alignment explanation
Indices: 13111110--13111181 Score: 83
Period size: 35 Copynumber: 2.2 Consensus size: 32
13111100 GTTAACCTGA
* *
13111110 TGACTATTTGTTTAGGAAAATGAAAGTTAACCCGG
1 TGACTGTTTGTTTAGGAAAATGAAAATT-A--CGG
*
13111145 TGACTGTTTGTTTAGGAAAATGAAAATT-GGG
1 TGACTGTTTGTTTAGGAAAATGAAAATTACGG
13111176 TGACTG
1 TGACTG
13111182 CTGGTGTAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 8 0.24
35 26 0.76
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.33
Consensus pattern (32 bp):
TGACTGTTTGTTTAGGAAAATGAAAATTACGG
Found at i:13111914 original size:16 final size:16
Alignment explanation
Indices: 13111847--13111917 Score: 115
Period size: 16 Copynumber: 4.4 Consensus size: 16
13111837 GTTTGGTTCG
*
13111847 CTGTAATGGAATAGAT
1 CTGTAATGGAATAGAA
*
13111863 GTGTAATGGAATAGAA
1 CTGTAATGGAATAGAA
*
13111879 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAA
13111895 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAA
13111911 CTGTAAT
1 CTGTAAT
13111918 CAGTAATTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.39, C:0.06, G:0.27, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGAA
Found at i:13111992 original size:44 final size:46
Alignment explanation
Indices: 13111899--13111992 Score: 122
Period size: 44 Copynumber: 2.1 Consensus size: 46
13111889 ATAGAGCTGT
* *
13111899 AATGGAATAGAACTGTAATCAGTAATTCAATTGTTTGGTTGATTGG
1 AATGGAATAGAACTGTAATCAATAATTCAATTGTTTGGTTGAATGG
* *
13111945 AATGGAATAGAGCTGTAAT-AAT-ATTC-TTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATCAATAATTCAAT-TGTTTGGTTGAATGG
13111989 AATG
1 AATG
13111993 ATGCTGTAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.51
45 2 0.05
46 18 0.42
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (46 bp):
AATGGAATAGAACTGTAATCAATAATTCAATTGTTTGGTTGAATGG
Found at i:13112158 original size:58 final size:56
Alignment explanation
Indices: 13112087--13112232 Score: 179
Period size: 58 Copynumber: 2.5 Consensus size: 56
13112077 AATTTTAATG
*
13112087 ATTATTATTAAATATAATTTAATAAAAATAT-TAATTTATTTAATTATATTTTAACATA
1 ATTATTATTAAATATAATTTAATAAAAATATGTAATTTA-ATAA-TAT-TTTTAACATA
* *
13112145 ATTATTATTAAATACAATTTAATAAAATAATATGTAATTTAATAATATTTTTAATATA
1 ATTATTATTAAATATAATTTAAT-AAA-AATATGTAATTTAATAATATTTTTAACATA
*
13112203 ATTATTATTAAAATATGAA-TTAGTAAAAAT
1 ATTATTATT-AAATAT-AATTTAATAAAAAT
13112233 TATAATATAT
Statistics
Matches: 78, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
57 3 0.04
58 43 0.55
59 15 0.19
60 10 0.13
61 7 0.09
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (56 bp):
ATTATTATTAAATATAATTTAATAAAAATATGTAATTTAATAATATTTTTAACATA
Found at i:13121429 original size:31 final size:32
Alignment explanation
Indices: 13121363--13121469 Score: 96
Period size: 31 Copynumber: 3.4 Consensus size: 32
13121353 GCTTAAATTT
* *
13121363 TTTTTTGTCTAATTTGGTA-CTCAAATTTGAC-AC
1 TTTTTT-T-TAATTTAGTACCT-AAACTTGACTAC
*
13121396 TTTTTTTTAATTTAGTACCTAAACTTTA-TAC
1 TTTTTTTTAATTTAGTACCTAAACTTGACTAC
* * * *
13121427 TTTTTTTTAAGTTGGTACCTGAACTTGACT-T
1 TTTTTTTTAATTTAGTACCTAAACTTGACTAC
13121458 TTTTTTTTAATT
1 TTTTTTTTAATT
13121470 CGATATCTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
31 52 0.84
32 4 0.06
33 6 0.10
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.55
Consensus pattern (32 bp):
TTTTTTTTAATTTAGTACCTAAACTTGACTAC
Found at i:13132193 original size:36 final size:36
Alignment explanation
Indices: 13132146--13132219 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
13132136 ATATGTTGCC
13132146 CTTTTAGGGGAGGGCTATCTATGGCTGTCATCTCTT
1 CTTTTAGGGGAGGGCTATCTATGGCTGTCATCTCTT
13132182 CTTTTAGGGGAGGGCTATCTATGGCTGTCATCTCTT
1 CTTTTAGGGGAGGGCTATCTATGGCTGTCATCTCTT
13132218 CT
1 CT
13132220 CCTCTCGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.14, C:0.20, G:0.27, T:0.39
Consensus pattern (36 bp):
CTTTTAGGGGAGGGCTATCTATGGCTGTCATCTCTT
Found at i:13139447 original size:5 final size:5
Alignment explanation
Indices: 13139424--13139477 Score: 65
Period size: 5 Copynumber: 10.8 Consensus size: 5
13139414 ACTGAGACAC
* * *
13139424 GAAGAG GAA-G GAAGA GAAGG GAAGG GAAGG GAAGA GAAGG GAAGG GAAGA
1 GAAG-G GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG
13139474 GAAG
1 GAAG
13139478 AGTAGAGTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
4 4 0.10
5 35 0.83
6 3 0.07
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (5 bp):
GAAGG
Found at i:13139447 original size:20 final size:19
Alignment explanation
Indices: 13139424--13139479 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 19
13139414 ACTGAGACAC
13139424 GAAGAGGAAGGAAGAGAAGG
1 GAAG-GGAAGGAAGAGAAGG
13139444 GAAGGGAAGGGAAGAGAAGG
1 GAAGGGAA-GGAAGAGAAGG
13139464 GAAGGGAAGAGAAGAG
1 GAAGGGAAG-GAAGAG
13139480 TAGAGTGTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.15
20 29 0.85
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (19 bp):
GAAGGGAAGGAAGAGAAGG
Found at i:13139451 original size:15 final size:15
Alignment explanation
Indices: 13139424--13139477 Score: 74
Period size: 15 Copynumber: 3.6 Consensus size: 15
13139414 ACTGAGACAC
*
13139424 GAAGAGGAA-GGAAGA
1 GAAGA-GAAGGGAAGG
*
13139439 GAAGGGAAGGGAAGG
1 GAAGAGAAGGGAAGG
13139454 GAAGAGAAGGGAAGG
1 GAAGAGAAGGGAAGG
13139469 GAAGAGAAG
1 GAAGAGAAG
13139478 AGTAGAGTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
14 3 0.09
15 32 0.91
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (15 bp):
GAAGAGAAGGGAAGG
Found at i:13139478 original size:5 final size:5
Alignment explanation
Indices: 13139424--13139484 Score: 52
Period size: 5 Copynumber: 12.2 Consensus size: 5
13139414 ACTGAGACAC
* * * * *
13139424 GAAGA GGAAG- GAAGA GAAGG GAAGG GAAGG GAAGA GAAGG GAAGG GAAGA
1 GAAGA -GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA
*
13139474 GAAGA GTAGA G
1 GAAGA GAAGA G
13139485 TGTATAAATG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
4 4 0.08
5 41 0.84
6 4 0.08
ACGTcount: A:0.48, C:0.00, G:0.51, T:0.02
Consensus pattern (5 bp):
GAAGA
Found at i:13140995 original size:93 final size:94
Alignment explanation
Indices: 13140891--13141079 Score: 258
Period size: 94 Copynumber: 2.0 Consensus size: 94
13140881 GCAGTTGATG
* * * *
13140891 AATCATAATGATGATCTTATCGTTCTTAT-CTTTAACTTTAC-TTTTACCAAATATTTTCTAAAA
1 AATCATAATGATGATCTTATCATCCCTATCCTTTAACTTTACATCTT-CCAAATATTTTCTAAAA
13140954 TTATGTT-TTCTTATACACATGAGATACCAT
65 TTATGTTCTT-TTATACACATGAGATACCAT
* * *
13140984 AATCATAATGATGATCTTATCATCCCTATCCTTTAACTTTACATCTTGCGAATATTTTCTCAAAT
1 AATCATAATGATGATCTTATCATCCCTATCCTTTAACTTTACATCTTCCAAATATTTTCTAAAAT
* *
13141049 TTTGTTCTTTTATACACGTGAGATACCAT
66 TATGTTCTTTTATACACATGAGATACCAT
13141078 AA
1 AA
13141080 CTTATTCTAG
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
93 26 0.31
94 53 0.63
95 5 0.06
ACGTcount: A:0.31, C:0.18, G:0.07, T:0.43
Consensus pattern (94 bp):
AATCATAATGATGATCTTATCATCCCTATCCTTTAACTTTACATCTTCCAAATATTTTCTAAAAT
TATGTTCTTTTATACACATGAGATACCAT
Found at i:13141551 original size:27 final size:27
Alignment explanation
Indices: 13141521--13141593 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
13141511 TTTTAGGTTA
*
13141521 TGCCACAAAGGTAGTTCATTCAAAGTT
1 TGCCACAAAGGTAGTTCATTCAAAGTG
* * *
13141548 TGCCACGAAGGTAGTTCTTTCAGAGTG
1 TGCCACAAAGGTAGTTCATTCAAAGTG
* *
13141575 CGCCACAAAGGTTGTTCAT
1 TGCCACAAAGGTAGTTCAT
13141594 AAATGTCGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (27 bp):
TGCCACAAAGGTAGTTCATTCAAAGTG
Found at i:13144657 original size:23 final size:23
Alignment explanation
Indices: 13144587--13144780 Score: 189
Period size: 23 Copynumber: 8.3 Consensus size: 23
13144577 ACGGAACAAG
* *
13144587 CAGAGAGTAC-CAAAGTACT-AA
1 CAGAGAGCACACAAAGTGCTAAA
* *
13144608 CAGAGAGCACA-TAAGTGCTGGGCAA
1 CAGAGAGCACACAAAGTGCT---AAA
*
13144633 CAGAGAGCACACACAGTGCTAAA
1 CAGAGAGCACACAAAGTGCTAAA
* * *
13144656 CAGAGAGTACACAAAGTACTAAT
1 CAGAGAGCACACAAAGTGCTAAA
*
13144679 CAGAGAGCACACAAAGTGCTAAT
1 CAGAGAGCACACAAAGTGCTAAA
*
13144702 CAGAGAGCACACAAAGTGCTAAT
1 CAGAGAGCACACAAAGTGCTAAA
*
13144725 CAGAGAGCACACACAGTGCTAATAA
1 CAGAGAGCACACAAAGTGCT-A-AA
* *
13144750 CAGAGAGCACGA-GACGTGCTAAA
1 CAGAGAGCAC-ACAAAGTGCTAAA
13144773 CAGAGAGC
1 CAGAGAGC
13144781 GCGCTAGTGT
Statistics
Matches: 147, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
21 15 0.10
23 94 0.64
24 2 0.01
25 29 0.20
26 7 0.05
ACGTcount: A:0.43, C:0.22, G:0.24, T:0.12
Consensus pattern (23 bp):
CAGAGAGCACACAAAGTGCTAAA
Found at i:13144706 original size:69 final size:68
Alignment explanation
Indices: 13144587--13144780 Score: 214
Period size: 69 Copynumber: 2.8 Consensus size: 68
13144577 ACGGAACAAG
* *
13144587 CAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACATAAGTGCTGGGCAACAGAGAGCACACACAGT
1 CAGAGAGTACACAAAGTACTAATCAGAGAGCACAAAAGTGCT--G-AACAGAGAGCACACAAAGT
13144650 GCTAAA
63 GCTAAA
13144656 CAGAGAGTACACAAAGTACTAATCAGAGAGCACACAAAGTGCT-AATCAGAGAGCACACAAAGTG
1 CAGAGAGTACACAAAGTACTAATCAGAGAGCACA-AAAGTGCTGAA-CAGAGAGCACACAAAGTG
*
13144720 CTAAT
64 CTAAA
* * * * * *
13144725 CAGAGAGCACACACAGTGCTAATAACAGAGAGCACGAGACGTGCTAAACAGAGAGC
1 CAGAGAGTACACAAAGTACTAAT--CAGAGAGCAC-AAAAGTGCTGAACAGAGAGC
13144781 GCGCTAGTGT
Statistics
Matches: 109, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
68 2 0.02
69 51 0.47
70 11 0.10
71 35 0.32
72 10 0.09
ACGTcount: A:0.43, C:0.22, G:0.24, T:0.12
Consensus pattern (68 bp):
CAGAGAGTACACAAAGTACTAATCAGAGAGCACAAAAGTGCTGAACAGAGAGCACACAAAGTGCT
AAA
Found at i:13151980 original size:21 final size:22
Alignment explanation
Indices: 13151954--13152090 Score: 134
Period size: 23 Copynumber: 6.0 Consensus size: 22
13151944 ACGGAACAAG
* *
13151954 CAGAGAGTAC-CAAAGTACTAA
1 CAGAGAGCACACAAAGTGCTAA
*
13151975 CAGAGAGCACA-TAAGTGCTGGGCAA
1 CAGAGAGCACACAAAGTGCT----AA
*
13152000 CAGAGAGCACACACAGTGCTAAA
1 CAGAGAGCACACAAAGTGCT-AA
* *
13152023 CAGAGAGTACACAAAGTACTAA
1 CAGAGAGCACACAAAGTGCTAA
13152045 TCAGAGAGCACACAAAGTGCTAA
1 -CAGAGAGCACACAAAGTGCTAA
*
13152068 TCAGAGAGCACACACAGTGCTAA
1 -CAGAGAGCACACAAAGTGCTAA
13152091 TAACAGAGAG
Statistics
Matches: 97, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
21 15 0.15
22 2 0.02
23 61 0.63
25 13 0.13
26 6 0.06
ACGTcount: A:0.43, C:0.22, G:0.23, T:0.12
Consensus pattern (22 bp):
CAGAGAGCACACAAAGTGCTAA
Found at i:13152024 original size:23 final size:23
Alignment explanation
Indices: 13151998--13152124 Score: 157
Period size: 23 Copynumber: 5.4 Consensus size: 23
13151988 AGTGCTGGGC
13151998 AACAGAGAGCACACACAGTGCTA
1 AACAGAGAGCACACACAGTGCTA
* * *
13152021 AACAGAGAGTACACAAAGTACTA
1 AACAGAGAGCACACACAGTGCTA
* *
13152044 ATCAGAGAGCACACAAAGTGCTA
1 AACAGAGAGCACACACAGTGCTA
*
13152067 ATCAGAGAGCACACACAGTGCTAA
1 AACAGAGAGCACACACAGTGCT-A
*
13152091 TAACAGAGAGCACGAGAC-GTGCTA
1 -AACAGAGAGCAC-ACACAGTGCTA
13152115 AACAGAGAGC
1 AACAGAGAGC
13152125 GCGCTAGTGT
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
23 71 0.77
24 2 0.02
25 16 0.17
26 3 0.03
ACGTcount: A:0.44, C:0.22, G:0.23, T:0.11
Consensus pattern (23 bp):
AACAGAGAGCACACACAGTGCTA
Found at i:13152027 original size:48 final size:43
Alignment explanation
Indices: 13151973--13152124 Score: 135
Period size: 48 Copynumber: 3.2 Consensus size: 43
13151963 CCAAAGTACT
13151973 AACAGAGAGCACATAAGTGCTGGGCAACAGAGAGCACACACAGTGCTA
1 AACAGAGAGCACA-AAGTGCT----AACAGAGAGCACACACAGTGCTA
* *
13152021 AACAGAGAGTACACAAAGTACTAATCAGAGAGCACACAAAGTGCTA
1 AACAGAGAG--CACAAAGTGCTAA-CAGAGAGCACACACAGTGCTA
* *
13152067 ATCAGAGAGCACACACAGTGCTAATAACAGAGAGCACGAGAC-GTGCTA
1 AACAGAGAGCACA-A-AGTGC---TAACAGAGAGCAC-ACACAGTGCTA
13152115 AACAGAGAGC
1 AACAGAGAGC
13152125 GCGCTAGTGT
Statistics
Matches: 88, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
44 4 0.05
45 3 0.03
46 32 0.36
48 34 0.39
49 11 0.12
50 4 0.05
ACGTcount: A:0.43, C:0.22, G:0.24, T:0.11
Consensus pattern (43 bp):
AACAGAGAGCACAAAGTGCTAACAGAGAGCACACACAGTGCTA
Found at i:13152073 original size:69 final size:68
Alignment explanation
Indices: 13151954--13152100 Score: 201
Period size: 69 Copynumber: 2.1 Consensus size: 68
13151944 ACGGAACAAG
*
13151954 CAGAGAGTACCAAAGTACTAACAGAGAGCACATAAGTGCTGGGCAACAGAGAGCACACACAGTGC
1 CAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCT--G-AACAGAGAGCACACACAGTGC
13152019 T-A-AA
63 TAATAA
13152023 CAGAGAGTACACAAAGTACTAATCAGAGAGCACACAAAGTGCT-AATCAGAGAGCACACACAGTG
1 CAGAGAGTAC-CAAAGTACTAA-CAGAGAGCACA-AAAGTGCTGAA-CAGAGAGCACACACAGTG
13152087 CTAATAA
62 CTAATAA
13152094 CAGAGAG
1 CAGAGAG
13152101 CACGAGACGT
Statistics
Matches: 71, Mismatches: 1, Indels: 10
0.87 0.01 0.12
Matches are distributed among these distances:
68 2 0.03
69 30 0.42
70 12 0.17
71 20 0.28
72 7 0.10
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (68 bp):
CAGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCTGAACAGAGAGCACACACAGTGCTAA
TAA
Found at i:13156041 original size:21 final size:21
Alignment explanation
Indices: 13156017--13156069 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 21
13156007 AAGTAACAAT
13156017 TCTACCGATACAAGTGAC-T-CC
1 TCTACCGATACAAGT--CTTACC
13156038 TCTACCGATACAAGTCTTACC
1 TCTACCGATACAAGTCTTACC
13156059 TCTACCGATAC
1 TCTACCGATAC
13156070 TAAAAACTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 1 0.03
20 1 0.03
21 28 0.93
ACGTcount: A:0.28, C:0.34, G:0.11, T:0.26
Consensus pattern (21 bp):
TCTACCGATACAAGTCTTACC
Found at i:13169752 original size:17 final size:20
Alignment explanation
Indices: 13169730--13169769 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 20
13169720 AAATTTAATG
13169730 ATTAAA-AGAGAC-AAAA-A
1 ATTAAATAGAGACTAAAATA
13169747 ATTAAATAGAGACTAAAATA
1 ATTAAATAGAGACTAAAATA
13169767 ATT
1 ATT
13169770 TTTTTTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 6 0.30
19 4 0.20
20 4 0.20
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.23
Consensus pattern (20 bp):
ATTAAATAGAGACTAAAATA
Found at i:13188467 original size:111 final size:111
Alignment explanation
Indices: 13188273--13188501 Score: 442
Period size: 111 Copynumber: 2.1 Consensus size: 111
13188263 TCTGAATCAG
*
13188273 AAATATAACATTAAATCACCAAACATTCATTGCACCGAACAACATGTACTGCACCTATATGTACA
1 AAATATAACATTAAATCACCAAACATTCATTGAACCGAACAACATGTACTGCACCTATATGTACA
13188338 CCAAATTTCACGGAACTGAAACACAGTTAATTTCTCTTTACCGATA
66 CCAAATTTCACGGAACTGAAACACAGTTAATTTCTCTTTACCGATA
13188384 AAATATAACATTAAATCACCAAACATTCATTGAACCGAACAACATGTACTGCACCTATATGTACA
1 AAATATAACATTAAATCACCAAACATTCATTGAACCGAACAACATGTACTGCACCTATATGTACA
13188449 CCAAATTTCACGGAACTGAAACACAGTTAATTTCTCTTTACCGATA
66 CCAAATTTCACGGAACTGAAACACAGTTAATTTCTCTTTACCGATA
13188495 AAA-ATAA
1 AAATATAA
13188502 TCATCAATGT
Statistics
Matches: 117, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
110 4 0.03
111 113 0.97
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (111 bp):
AAATATAACATTAAATCACCAAACATTCATTGAACCGAACAACATGTACTGCACCTATATGTACA
CCAAATTTCACGGAACTGAAACACAGTTAATTTCTCTTTACCGATA
Found at i:13189604 original size:37 final size:37
Alignment explanation
Indices: 13189563--13189637 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
13189553 TTGCCACAGA
13189563 ATACAATGAGCACTTGAAGGATAATTTATTAACTAGG
1 ATACAATGAGCACTTGAAGGATAATTTATTAACTAGG
13189600 ATACAATGAGCACTTGAAGGATAATTTATTAACTAGG
1 ATACAATGAGCACTTGAAGGATAATTTATTAACTAGG
13189637 A
1 A
13189638 AGACCTTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (37 bp):
ATACAATGAGCACTTGAAGGATAATTTATTAACTAGG
Found at i:13193198 original size:13 final size:13
Alignment explanation
Indices: 13193180--13193213 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
13193170 TGGCATTGGG
13193180 TGAGTATGGTGCA
1 TGAGTATGGTGCA
13193193 TGAGTATGGTGCA
1 TGAGTATGGTGCA
*
13193206 TGCGTATG
1 TGAGTATG
13193214 TAGCGTGAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.21, C:0.09, G:0.38, T:0.32
Consensus pattern (13 bp):
TGAGTATGGTGCA
Found at i:13208339 original size:2 final size:2
Alignment explanation
Indices: 13208327--13208376 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
13208317 TTCCCCATTG
*
13208327 CT CT CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
13208369 CT CT CT CT
1 CT CT CT CT
13208377 AACTAAAAGC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
CT
Found at i:13209332 original size:2 final size:2
Alignment explanation
Indices: 13209325--13209349 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
13209315 AACTATATTA
13209325 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
13209350 ATAAAATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13210029 original size:16 final size:17
Alignment explanation
Indices: 13210005--13210039 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
13209995 ATGTTACTTG
13210005 AATAATTGTATCT-TTT
1 AATAATTGTATCTATTT
*
13210021 AATAGTTGTATCTATTT
1 AATAATTGTATCTATTT
13210038 AA
1 AA
13210040 AAGATATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (17 bp):
AATAATTGTATCTATTT
Found at i:13211829 original size:28 final size:28
Alignment explanation
Indices: 13211773--13211830 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
13211763 TTTGGTCCTT
**
13211773 GGCTATCTAAAAAGGTATAAAGGGTAAA
1 GGCTATCTAAAAAGGTATAAAGGAAAAA
*
13211801 GGCTATCTAAAAAGGTGTAAAGGAAAAA
1 GGCTATCTAAAAAGGTATAAAGGAAAAA
13211829 GG
1 GG
13211831 AAAAACAGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.07, G:0.28, T:0.19
Consensus pattern (28 bp):
GGCTATCTAAAAAGGTATAAAGGAAAAA
Found at i:13221383 original size:23 final size:22
Alignment explanation
Indices: 13221327--13221385 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
13221317 TAATTCGAAT
*
13221327 AAATAATTTAAAATTTGAATTC
1 AAATAATTTAAATTTTGAATTC
* * *
13221349 AAATCGAGTTAAATTTTATAATTC
1 AAAT-AATTTAAATTTT-GAATTC
13221373 AAATAATTTAAAT
1 AAATAATTTAAAT
13221386 AACAGAGTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
22 4 0.14
23 16 0.55
24 9 0.31
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (22 bp):
AAATAATTTAAATTTTGAATTC
Found at i:13222232 original size:16 final size:18
Alignment explanation
Indices: 13222201--13222233 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
13222191 ATCATTTTAC
13222201 ATAACAAATCAATAAAAA
1 ATAACAAATCAATAAAAA
13222219 ATAA-AAAT-AATAAAA
1 ATAACAAATCAATAAAA
13222234 TTTGAATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (18 bp):
ATAACAAATCAATAAAAA
Found at i:13223976 original size:21 final size:21
Alignment explanation
Indices: 13223952--13223995 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
13223942 TGGTTAACTA
13223952 ACACGTAATGATGCAAACTGT
1 ACACGTAATGATGCAAACTGT
13223973 ACACGTAATGATGCAAACTGT
1 ACACGTAATGATGCAAACTGT
13223994 AC
1 AC
13223996 TCAATTTAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (21 bp):
ACACGTAATGATGCAAACTGT
Found at i:13226062 original size:22 final size:23
Alignment explanation
Indices: 13226017--13226064 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
13226007 TCTAGTTTGA
* * *
13226017 TTTTTTAAATTTGTTACTTGTAT
1 TTTTTTAAATGTGATACTTATAT
13226040 TTTTTTAAATGTGATA-TTATAT
1 TTTTTTAAATGTGATACTTATAT
13226062 TTT
1 TTT
13226065 GCTAATAGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.25, C:0.02, G:0.08, T:0.65
Consensus pattern (23 bp):
TTTTTTAAATGTGATACTTATAT
Found at i:13226209 original size:5 final size:5
Alignment explanation
Indices: 13226201--13226243 Score: 52
Period size: 5 Copynumber: 8.2 Consensus size: 5
13226191 ATTCAACATA
13226201 AAATT AAA-T AAATT CACAATT AATATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT -A-AATT AA-ATT AAATT AAATT AAATT A
13226244 TTTTACTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
4 4 0.12
5 19 0.56
6 7 0.21
7 4 0.12
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (5 bp):
AAATT
Found at i:13260789 original size:22 final size:21
Alignment explanation
Indices: 13260764--13260819 Score: 51
Period size: 22 Copynumber: 2.6 Consensus size: 21
13260754 TTATTTTAGT
13260764 AATTATATTAGATTTACTTTT-A
1 AATTATATTAGATTT--TTTTCA
* *
13260786 AATTTTATGTGGATTTTTTTCA
1 AATTATAT-TAGATTTTTTTCA
*
13260808 AATTATTTTAGA
1 AATTATATTAGA
13260820 CCCATCTGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
21 7 0.26
22 14 0.52
23 6 0.22
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.55
Consensus pattern (21 bp):
AATTATATTAGATTTTTTTCA
Found at i:13266793 original size:70 final size:70
Alignment explanation
Indices: 13266700--13266849 Score: 264
Period size: 70 Copynumber: 2.1 Consensus size: 70
13266690 AGTATAATTT
*
13266700 CTACCGATACTAAAAACTCCAGAGAGCTATAATTTCCACCTTGCAACTTCTACCGATATAAGCAT
1 CTACCGATACTAAAAACTCCAGAGAGCTATAATTTCCACCTTGCAACTTCTACCGATACAAGCAT
13266765 GCAAA
66 GCAAA
* * *
13266770 CTACCGATACTAAAAACTTCAGAGAGCTATAATTTTCACCTTGCAACTTCTACCGATACAAGTAT
1 CTACCGATACTAAAAACTCCAGAGAGCTATAATTTCCACCTTGCAACTTCTACCGATACAAGCAT
13266835 GCAAA
66 GCAAA
13266840 CTACCGATAC
1 CTACCGATAC
13266850 ATCTATACAT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 76 1.00
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.25
Consensus pattern (70 bp):
CTACCGATACTAAAAACTCCAGAGAGCTATAATTTCCACCTTGCAACTTCTACCGATACAAGCAT
GCAAA
Found at i:13267676 original size:105 final size:104
Alignment explanation
Indices: 13267479--13267720 Score: 308
Period size: 105 Copynumber: 2.3 Consensus size: 104
13267469 TCACTTTATT
* * * * ** * *
13267479 CATATACTCACGATGACACATAGCCACCGGACCTTATAATCCACGAGAGATTCGTATACTCATGA
1 CATATACTCACGATGACACTTAGTCATCAGACCTTATAATCCAAAAGAGATTCATATACTCAAGA
* **
13267544 TGACACAGAGTCATCGGACCTTTTAATCCGTAAAGGATC
66 TGACACAGAGTCATCAGACCTCGTAATCCGTAAAGGATC
13267583 CATATACTCACGATGACACTTAGTCATCAGACCTT-TAAATCCATAAAG-GATTTCATATACTCA
1 CATATACTCACGATGACACTTAGTCATCAGACCTTAT-AATCCA-AAAGAGA-TTCATATACTCA
*
13267646 AGATGACACAGAGTCATCAGACCTCGTAATCCGTAAAGGATT
63 AGATGACACAGAGTCATCAGACCTCGTAATCCGTAAAGGATC
* * *
13267688 CATTTACTCACGATGACAGTTAATCATCAGACC
1 CATATACTCACGATGACACTTAGTCATCAGACC
13267721 CTTTTTCATT
Statistics
Matches: 120, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
103 1 0.01
104 39 0.32
105 80 0.67
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (104 bp):
CATATACTCACGATGACACTTAGTCATCAGACCTTATAATCCAAAAGAGATTCATATACTCAAGA
TGACACAGAGTCATCAGACCTCGTAATCCGTAAAGGATC
Found at i:13267715 original size:52 final size:51
Alignment explanation
Indices: 13267476--13267720 Score: 224
Period size: 52 Copynumber: 4.7 Consensus size: 51
13267466 ATTTCACTTT
* * * * * *
13267476 ATTCATATACTCACGATGACACATAGCCACCGGACCTTATAATCC--ACGAGAG
1 ATTCATATACTCACGATGACACTTAGTCATCAGACC-TGTAATCCGTA-AAG-G
* * ** * *
13267528 ATTCGTATACTCATGATGACACAGAGTCATCGGACCTTTTAATCCGTAAAGG
1 ATTCATATACTCACGATGACACTTAGTCATCAGACC-TGTAATCCGTAAAGG
* * *
13267580 ATCCATATACTCACGATGACACTTAGTCATCAGACCTTTAAATCCATAAAGG
1 ATTCATATACTCACGATGACACTTAGTCATCAGACCTGT-AATCCGTAAAGG
* **
13267632 ATTTCATATACTCAAGATGACACAGAGTCATCAGACCTCGTAATCCGTAAAGG
1 A-TTCATATACTCACGATGACACTTAGTCATCAGACCT-GTAATCCGTAAAGG
* * *
13267685 ATTCATTTACTCACGATGACAGTTAATCATCAGACC
1 ATTCATATACTCACGATGACACTTAGTCATCAGACC
13267721 CTTTTTCATT
Statistics
Matches: 162, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
51 3 0.02
52 111 0.69
53 46 0.28
54 2 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.26
Consensus pattern (51 bp):
ATTCATATACTCACGATGACACTTAGTCATCAGACCTGTAATCCGTAAAGG
Found at i:13268624 original size:20 final size:19
Alignment explanation
Indices: 13268576--13268624 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
13268566 ATTTAAACTT
* *
13268576 TCATAATTAGCTTCATTAA
1 TCATATTTAGCTTAATTAA
*
13268595 TCATTGTTTAGCTTTAATTAA
1 TCA-TATTTAGC-TTAATTAA
13268616 TCATATTTA
1 TCATATTTA
13268625 CTTCTAATAC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 3 0.12
20 11 0.46
21 10 0.42
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.49
Consensus pattern (19 bp):
TCATATTTAGCTTAATTAA
Found at i:13276467 original size:16 final size:17
Alignment explanation
Indices: 13276432--13276483 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
13276422 GCTCGAACCG
13276432 TTTTAA-ATT-TATAAT
1 TTTTAATATTATATAAT
*
13276447 ATTTT-ATATTATATTAT
1 -TTTTAATATTATATAAT
13276464 TTTTACATATTATATAAT
1 TTTTA-ATATTATATAAT
13276482 TT
1 TT
13276484 AGAACACATT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 1 0.03
16 11 0.37
17 5 0.17
18 13 0.43
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTAATATTATATAAT
Found at i:13276603 original size:18 final size:18
Alignment explanation
Indices: 13276564--13276622 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
13276554 TAAGATGATT
13276564 ATATAAAAAATT-TAATA
1 ATATAAAAAATTATAATA
13276581 A-ATAAAAAATTATAA-A
1 ATATAAAAAATTATAATA
* *
13276597 ATTATAAAATATTAAAATA
1 A-TATAAAAAATTATAATA
*
13276616 AAATAAA
1 ATATAAA
13276623 TATTTTTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
16 12 0.34
17 4 0.11
18 17 0.49
19 2 0.06
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
ATATAAAAAATTATAATA
Found at i:13288094 original size:3 final size:3
Alignment explanation
Indices: 13288088--13288114 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
13288078 TGACCTGCTT
13288088 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
13288115 AACCTCATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:13297138 original size:18 final size:18
Alignment explanation
Indices: 13297102--13297139 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
13297092 TAAATTTTCG
*
13297102 AATTCGAATAACTCGAAT
1 AATTCGAATAACTCAAAT
13297120 AATTCGAATAAAC-CAAAT
1 AATTCGAAT-AACTCAAAT
13297138 AA
1 AA
13297140 AATTATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.53, C:0.16, G:0.08, T:0.24
Consensus pattern (18 bp):
AATTCGAATAACTCAAAT
Found at i:13302085 original size:400 final size:399
Alignment explanation
Indices: 13301346--13302157 Score: 1435
Period size: 400 Copynumber: 2.0 Consensus size: 399
13301336 TTGAGCCATA
*
13301346 TTTTAACCTTCAATGTTGACAATCCTTTTGTCAATTTAGTCTATTCTCTTTAAAAAAATATTTTT
1 TTTTAACCTTCAATGTTGACAATCCTTTTGTCAATTTAGTCTATTCTCTTTAAAAAAACATTTTT
* * * *
13301411 TTCCTGTATTTTCAATAAAAAATAATAATCATATTAAAATTTTCATATAAGAGTGGACCTCGTTT
66 TTCCAGTATTTTCAATAAAAAATAAAAATCATATTAAAAATTTCATATAAGAGTGGACCTCATTT
*
13301476 TGGCAAGATTTAAAGGTAAATAATTAAGTCTCGAAATTTTTATTGTAATTTTTTAAAAAAATTAT
131 TGGCAAGATTTAAAGGTAAATAATTAAGTCTCGAAATTTTTATTGTAATTTTTCAAAAAAATTAT
13301541 ACATATATTTGAATTTAATTTGATTCGATTCAGAGTTTGTATTATTGTTTAAAAAATATTTATAC
196 ACATATATTTGAATTTAATTTGATTCGATTCAGAGTTTGTATTATTGTTTAAAAAATATTTATAC
*
13301606 TGATAAAATATTTTATATATTTTATAATTAAATTTAAATAAAAATATTTTTTTGGTGAATTACAA
261 TGATAAAATATTTTATATATTTTATAATTAAATTTAAATAAAAATATTTTTTTAGTGAATTACAA
* **
13301671 GGAGCGGGCAAAAACCCTAATAGCAACACGATTGACGTGACTCAAACCCAGGTCATACCTGAGGT
326 GGAGCGGGCAAAAACCCTAATAGCAACACGACTGACGTGACTCAAACCCAGACCATACCTGAGGT
*
13301736 AATGGATAC
391 AATGAATAC
13301745 TTTTAACCTTCAATGTTGACAATCCTTTTGTCAATTTAGTCTATTCTCTTTAAAAAATACATTTT
1 TTTTAACCTTCAATGTTGACAATCCTTTTGTCAATTTAGTCTATTCTCTTTAAAAAA-ACATTTT
*
13301810 TTTTCAGTATTTTCAATAAAAAATAAAAATCATATTAAAAATTTCATATAAGAGTGGACCTCATT
65 TTTCCAGTATTTTCAATAAAAAATAAAAATCATATTAAAAATTTCATATAAGAGTGGACCTCATT
* * *
13301875 TTGGCAAGATTTAAAGGTAAGTAATTGAGTCTCGAAATTTTTATTGTAGTTTTTCAAAAAAATTA
130 TTGGCAAGATTTAAAGGTAAATAATTAAGTCTCGAAATTTTTATTGTAATTTTTCAAAAAAATTA
13301940 TACATATATTTGAATTTAATTTGATTCGATTCAGAGTTTGTATTATTGTTTAAAAAATATTTATA
195 TACATATATTTGAATTTAATTTGATTCGATTCAGAGTTTGTATTATTGTTTAAAAAATATTTATA
*
13302005 TTGATAAAATATTTTATATATTTTATAATTAAATTTAAATAAAAATATTTTTTTAGTGAATTACA
260 CTGATAAAATATTTTATATATTTTATAATTAAATTTAAATAAAAATATTTTTTTAGTGAATTACA
*
13302070 AGGAGCGGGCAAAAACTCTAATAGCAACACGACTGACGTGACTCAAACCCAGACCATACCTGAGG
325 AGGAGCGGGCAAAAACCCTAATAGCAACACGACTGACGTGACTCAAACCCAGACCATACCTGAGG
*
13302135 TAATGAATAT
390 TAATGAATAC
* *
13302145 TTTTGACCATCAA
1 TTTTAACCTTCAA
13302158 ACCAATACAT
Statistics
Matches: 392, Mismatches: 20, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
399 57 0.15
400 335 0.85
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.40
Consensus pattern (399 bp):
TTTTAACCTTCAATGTTGACAATCCTTTTGTCAATTTAGTCTATTCTCTTTAAAAAAACATTTTT
TTCCAGTATTTTCAATAAAAAATAAAAATCATATTAAAAATTTCATATAAGAGTGGACCTCATTT
TGGCAAGATTTAAAGGTAAATAATTAAGTCTCGAAATTTTTATTGTAATTTTTCAAAAAAATTAT
ACATATATTTGAATTTAATTTGATTCGATTCAGAGTTTGTATTATTGTTTAAAAAATATTTATAC
TGATAAAATATTTTATATATTTTATAATTAAATTTAAATAAAAATATTTTTTTAGTGAATTACAA
GGAGCGGGCAAAAACCCTAATAGCAACACGACTGACGTGACTCAAACCCAGACCATACCTGAGGT
AATGAATAC
Found at i:13304501 original size:12 final size:12
Alignment explanation
Indices: 13304464--13304502 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
13304454 TTTGTGATCA
13304464 AAATTGGAAGTG
1 AAATTGGAAGTG
* *
13304476 AAAGTGAAAGTG
1 AAATTGGAAGTG
*
13304488 AAATTGGAATTG
1 AAATTGGAAGTG
13304500 AAA
1 AAA
13304503 ATGATATGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.28, T:0.23
Consensus pattern (12 bp):
AAATTGGAAGTG
Found at i:13306336 original size:23 final size:23
Alignment explanation
Indices: 13306254--13306450 Score: 95
Period size: 23 Copynumber: 8.8 Consensus size: 23
13306244 AGTAGTACCG
*
13306254 AAGTACTAAACAGAGAGCACA-T
1 AAGTACTAAACAGAGAGCACACA
* *
13306276 AAGTGCTGGGCAACAGAGAGCACACA
1 AAGTACT---AAACAGAGAGCACACA
* **
13306302 CAGTACTAAACAGAGAGTGCACA
1 AAGTACTAAACAGAGAGCACACA
*
13306325 AAGTA-T----TGA-A-CACACA
1 AAGTACTAAACAGAGAGCACACA
* **
13306341 AAGTGCTAATTAGAGAGCACACA
1 AAGTACTAAACAGAGAGCACACA
*** *
13306364 AAGCGTTAAACGGAGAGCACACA
1 AAGTACTAAACAGAGAGCACACA
* * * *
13306387 AAATGCTAAACGGAGAGCGCACA
1 AAGTACTAAACAGAGAGCACACA
* * * *
13306410 AAATGCTAAACGGAGAGCGCACA
1 AAGTACTAAACAGAGAGCACACA
* *
13306433 AAGTGCTAAACGGAGAGC
1 AAGTACTAAACAGAGAGC
13306451 GCGCTAGTGT
Statistics
Matches: 140, Mismatches: 24, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
16 8 0.06
17 2 0.01
18 2 0.01
21 2 0.01
22 8 0.06
23 100 0.71
25 13 0.09
26 5 0.04
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.12
Consensus pattern (23 bp):
AAGTACTAAACAGAGAGCACACA
Found at i:13306451 original size:23 final size:23
Alignment explanation
Indices: 13306337--13306452 Score: 151
Period size: 23 Copynumber: 5.0 Consensus size: 23
13306327 GTATTGAACA
*** *
13306337 CACAAAGTGCTAATTAGAGAGCA
1 CACAAAGTGCTAAACGGAGAGCG
* * *
13306360 CACAAAGCGTTAAACGGAGAGCA
1 CACAAAGTGCTAAACGGAGAGCG
*
13306383 CACAAAATGCTAAACGGAGAGCG
1 CACAAAGTGCTAAACGGAGAGCG
*
13306406 CACAAAATGCTAAACGGAGAGCG
1 CACAAAGTGCTAAACGGAGAGCG
13306429 CACAAAGTGCTAAACGGAGAGCG
1 CACAAAGTGCTAAACGGAGAGCG
13306452 C
1 C
13306453 GCTAGTGTTC
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 83 1.00
ACGTcount: A:0.42, C:0.22, G:0.26, T:0.10
Consensus pattern (23 bp):
CACAAAGTGCTAAACGGAGAGCG
Found at i:13308700 original size:6 final size:7
Alignment explanation
Indices: 13308680--13308706 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
13308670 TATATAATTT
13308680 ATTAAAA
1 ATTAAAA
13308687 ATTAAAA
1 ATTAAAA
13308694 ATTAAAA
1 ATTAAAA
13308701 ATTAAA
1 ATTAAA
13308707 CTATAAACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
ATTAAAA
Found at i:13309570 original size:19 final size:20
Alignment explanation
Indices: 13309527--13309571 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
13309517 ATTCAAGGAG
* *
13309527 CTTTTTTTTGAATTTTTTAT
1 CTTTTTTATGAATTTTTAAT
*
13309547 ATTTTTTAT-AATTTTTAAT
1 CTTTTTTATGAATTTTTAAT
13309566 CTTTTT
1 CTTTTT
13309572 AATTTTAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.73
Consensus pattern (20 bp):
CTTTTTTATGAATTTTTAAT
Found at i:13312797 original size:13 final size:13
Alignment explanation
Indices: 13312779--13312803 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13312769 TTAAATTAAC
13312779 ATTATATTTTTAT
1 ATTATATTTTTAT
13312792 ATTATATTTTTA
1 ATTATATTTTTA
13312804 AATAATAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTATATTTTTAT
Found at i:13313988 original size:28 final size:26
Alignment explanation
Indices: 13313927--13313988 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 26
13313917 TAAGAAGTTG
13313927 AATCAATTTCATATTTTTTAATTTCT
1 AATCAATTTCATATTTTTTAATTTCT
* * * *
13313953 ACTTAATTTTATATTTTTTTGAATTTTT
1 AATCAATTTCATA-TTTTTT-AATTTCT
13313981 AATCAATT
1 AATCAATT
13313989 ATTGATTCGA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
26 10 0.36
27 6 0.21
28 12 0.43
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.60
Consensus pattern (26 bp):
AATCAATTTCATATTTTTTAATTTCT
Found at i:13319520 original size:6 final size:6
Alignment explanation
Indices: 13319509--13319582 Score: 62
Period size: 6 Copynumber: 12.5 Consensus size: 6
13319499 TTTGTGATCA
* * * * *
13319509 AAATTG AAATTG AAAGTG AAAGTG AAAGTG AAAGTG AAGTTG AAATTG
1 AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG
* *
13319557 AAAGTG ATA-TG -AATTG TAAATTG AAA
1 AAATTG AAATTG AAATTG -AAATTG AAA
13319583 ATCCCTATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
4 1 0.02
5 4 0.07
6 48 0.83
7 5 0.09
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (6 bp):
AAATTG
Found at i:13319540 original size:18 final size:19
Alignment explanation
Indices: 13319512--13319563 Score: 81
Period size: 18 Copynumber: 2.8 Consensus size: 19
13319502 GTGATCAAAA
13319512 TTGAAATTGAAAGTGAAAG
1 TTGAAATTGAAAGTGAAAG
*
13319531 -TGAAAGTGAAAGTG-AAG
1 TTGAAATTGAAAGTGAAAG
13319548 TTGAAATTGAAAGTGA
1 TTGAAATTGAAAGTGA
13319564 TATGAATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 3 0.10
18 26 0.90
ACGTcount: A:0.46, C:0.00, G:0.29, T:0.25
Consensus pattern (19 bp):
TTGAAATTGAAAGTGAAAG
Found at i:13319713 original size:41 final size:40
Alignment explanation
Indices: 13319665--13319765 Score: 100
Period size: 38 Copynumber: 2.6 Consensus size: 40
13319655 TCGACCTCGA
** *
13319665 GTCGATGAGACACTGGGTGTCATTATTTTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
* ** *
13319705 ATTCGATGAGGTACT-GG-GT-ACCACTTTACTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
*
13319743 GCCGATGAGACACTGGGTGTCAC
1 GTCGATGAGACACTGGGTGTCAC
13319766 TTTATTGTTT
Statistics
Matches: 46, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
37 10 0.22
38 17 0.37
39 4 0.09
40 4 0.09
41 11 0.24
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (40 bp):
GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
Found at i:13324888 original size:6 final size:6
Alignment explanation
Indices: 13324877--13324950 Score: 62
Period size: 6 Copynumber: 12.5 Consensus size: 6
13324867 TTTGTGATCA
* * * * *
13324877 AAATTG AAATTG AAAGTG AAAGTG AAAGTG AAAGTG AAGTTG AAATTG
1 AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG
* *
13324925 AAAGTG ATA-TG -AATTG TAAATTG AAA
1 AAATTG AAATTG AAATTG -AAATTG AAA
13324951 ATCCCTATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
4 1 0.02
5 4 0.07
6 48 0.83
7 5 0.09
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (6 bp):
AAATTG
Found at i:13324908 original size:18 final size:19
Alignment explanation
Indices: 13324880--13324931 Score: 81
Period size: 18 Copynumber: 2.8 Consensus size: 19
13324870 GTGATCAAAA
13324880 TTGAAATTGAAAGTGAAAG
1 TTGAAATTGAAAGTGAAAG
*
13324899 -TGAAAGTGAAAGTG-AAG
1 TTGAAATTGAAAGTGAAAG
13324916 TTGAAATTGAAAGTGA
1 TTGAAATTGAAAGTGA
13324932 TATGAATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 3 0.10
18 26 0.90
ACGTcount: A:0.46, C:0.00, G:0.29, T:0.25
Consensus pattern (19 bp):
TTGAAATTGAAAGTGAAAG
Found at i:13325081 original size:41 final size:40
Alignment explanation
Indices: 13325033--13325133 Score: 100
Period size: 38 Copynumber: 2.6 Consensus size: 40
13325023 TCGACCTCGA
** *
13325033 GTCGATGAGACACTGGGTGTCATTATTTTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
* ** *
13325073 ATTCGATGAGGTACT-GG-GT-ACCACTTTACTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
*
13325111 GCCGATGAGACACTGGGTGTCAC
1 GTCGATGAGACACTGGGTGTCAC
13325134 TTTATTGTTT
Statistics
Matches: 46, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
37 10 0.22
38 17 0.37
39 4 0.09
40 4 0.09
41 11 0.24
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (40 bp):
GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
Found at i:13330257 original size:6 final size:6
Alignment explanation
Indices: 13330246--13330319 Score: 62
Period size: 6 Copynumber: 12.5 Consensus size: 6
13330236 TTTGTGATCA
* * * * *
13330246 AAATTG AAATTG AAAGTG AAAGTG AAAGTG AAAGTG AAGTTG AAATTG
1 AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG
* *
13330294 AAAGTG ATA-TG -AATTG TAAATTG AAA
1 AAATTG AAATTG AAATTG -AAATTG AAA
13330320 ATCCCTATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
4 1 0.02
5 4 0.07
6 48 0.83
7 5 0.09
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (6 bp):
AAATTG
Done.