Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 41 of 171
Found at i:18086087 original size:29 final size:31
Alignment explanation
Indices: 18086054--18086119 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
18086044 ATATAAAAAT
18086054 TTCATGAATAAAATTG-A-ATAAAATCAAAG
1 TTCATGAATAAAATTGCACATAAAATCAAAG
* * * *
18086083 TTCATGTATACAATTGCACATTAAATCATAG
1 TTCATGAATAAAATTGCACATAAAATCAAAG
18086114 TTCATG
1 TTCATG
18086120 TATAGTTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 14 0.45
30 1 0.03
31 16 0.52
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (31 bp):
TTCATGAATAAAATTGCACATAAAATCAAAG
Found at i:18092536 original size:23 final size:23
Alignment explanation
Indices: 18092510--18092605 Score: 74
Period size: 23 Copynumber: 4.3 Consensus size: 23
18092500 CATCCCATTC
18092510 CCAAAACAGTAAAAAAAAAAACA
1 CCAAAACAGTAAAAAAAAAAACA
* * *
18092533 CCAAAACAAT-AAAAAAACAATA
1 CCAAAACAGTAAAAAAAAAAACA
*
18092555 -CAAAA-A-TAACATAAAAAAACAA
1 CCAAAACAGTAA-AAAAAAAAAC-A
* * * *
18092577 TCAAAACTGTAAAAAAAACAGCA
1 CCAAAACAGTAAAAAAAAAAACA
18092600 CCAAAA
1 CCAAAA
18092606 TAATAATATA
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
19 1 0.02
20 2 0.04
21 12 0.21
22 11 0.20
23 20 0.36
24 7 0.12
25 3 0.05
ACGTcount: A:0.71, C:0.18, G:0.03, T:0.08
Consensus pattern (23 bp):
CCAAAACAGTAAAAAAAAAAACA
Found at i:18092549 original size:11 final size:11
Alignment explanation
Indices: 18092535--18092582 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 11
18092525 AAAAAACACC
18092535 AAAACAATAAA
1 AAAACAATAAA
18092546 AAAACAATACAA
1 AAAACAATA-AA
18092558 AAATA-ACATAAA
1 AAA-ACA-ATAAA
18092570 AAAACAATCAAA
1 AAAACAAT-AAA
18092582 A
1 A
18092583 CTGTAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
11 12 0.38
12 16 0.50
13 4 0.12
ACGTcount: A:0.77, C:0.12, G:0.00, T:0.10
Consensus pattern (11 bp):
AAAACAATAAA
Found at i:18092594 original size:24 final size:23
Alignment explanation
Indices: 18092511--18092594 Score: 61
Period size: 24 Copynumber: 3.7 Consensus size: 23
18092501 ATCCCATTCC
*
18092511 CAAAACAGTAAAAAAAAAAAC-AC
1 CAAAAC-GTAAAAAAAAAAACAAT
*
18092534 CAAAAC---AATAAAAAAACAAT
1 CAAAACGTAAAAAAAAAAACAAT
* *
18092554 ACAAAA-ATAACATAAAAAAACAAT
1 -CAAAACGTAA-AAAAAAAAACAAT
18092578 CAAAACTGTAAAAAAAA
1 CAAAAC-GTAAAAAAAA
18092595 CAGCACCAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
19 10 0.20
20 1 0.02
21 5 0.10
23 12 0.24
24 18 0.37
25 3 0.06
ACGTcount: A:0.74, C:0.14, G:0.02, T:0.10
Consensus pattern (23 bp):
CAAAACGTAAAAAAAAAAACAAT
Found at i:18093579 original size:22 final size:22
Alignment explanation
Indices: 18093551--18093595 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
18093541 ATTAATCTAG
18093551 AAAAAGTTTGATTCATATTTGA
1 AAAAAGTTTGATTCATATTTGA
*
18093573 AAAAAGTTTGGTTCATATTTGA
1 AAAAAGTTTGATTCATATTTGA
18093595 A
1 A
18093596 TATATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (22 bp):
AAAAAGTTTGATTCATATTTGA
Found at i:18094365 original size:15 final size:15
Alignment explanation
Indices: 18094324--18094370 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
18094314 AATCTAATGA
18094324 TTTTTGGATATTTCC
1 TTTTTGGATATTTCC
* *
18094339 TTTGTT-CA-ATTTTC
1 TTT-TTGGATATTTCC
18094353 TTTTTGGATATTTCC
1 TTTTTGGATATTTCC
18094368 TTT
1 TTT
18094371 CGATGTCGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
13 2 0.08
14 9 0.36
15 12 0.48
16 2 0.08
ACGTcount: A:0.13, C:0.13, G:0.11, T:0.64
Consensus pattern (15 bp):
TTTTTGGATATTTCC
Found at i:18122491 original size:7 final size:7
Alignment explanation
Indices: 18122481--18122507 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
18122471 ATTGAAGCAA
18122481 AAATAAT
1 AAATAAT
18122488 AAATAAT
1 AAATAAT
18122495 AAATAAT
1 AAATAAT
18122502 AAATAA
1 AAATAA
18122508 AAGTTGGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATAAT
Found at i:18126502 original size:14 final size:16
Alignment explanation
Indices: 18126471--18126503 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
18126461 ATTAAATTTT
18126471 TTTATAATTTTAATAA
1 TTTATAATTTTAATAA
18126487 TTTAT-ATTTT-ATAA
1 TTTATAATTTTAATAA
18126501 TTT
1 TTT
18126504 TAAAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 5 0.29
16 5 0.29
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTATAATTTTAATAA
Found at i:18126777 original size:28 final size:27
Alignment explanation
Indices: 18126717--18126780 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 27
18126707 AAATGATTAC
*
18126717 CTACAAAATTAGAATGATAGTAATATA
1 CTACAAAATTAGAATGATAGTAATAGA
*
18126744 CTACAAAATTAGAATGATTTGTAATAGA
1 CTACAAAATTAGAATGA-TAGTAATAGA
18126772 -TAACAAAAT
1 CT-ACAAAAT
18126781 AAAATTTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 18 0.55
28 15 0.45
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.30
Consensus pattern (27 bp):
CTACAAAATTAGAATGATAGTAATAGA
Found at i:18135689 original size:30 final size:30
Alignment explanation
Indices: 18135653--18135805 Score: 97
Period size: 30 Copynumber: 5.2 Consensus size: 30
18135643 ACTTCCGAGG
18135653 TAAAAATGTAATTTTTGGTGAAATTAGGGT
1 TAAAAATGTAATTTTTGGTGAAATTAGGGT
*
18135683 TAAAAATGGAA-TTTT-G-GAAAGTTCGAGGG-
1 TAAAAATGTAATTTTTGGTGAAA-TT--AGGGT
** * ** *
18135712 TAAAACGGTGATTTTTGGTGAAATCGGGGC
1 TAAAAATGTAATTTTTGGTGAAATTAGGGT
* *
18135742 TAAAAATG-AAGTTTT-G-GAAAGTTCAGGGG
1 TAAAAATGTAATTTTTGGTGAAA-TT-AGGGT
**
18135771 T-AAAATGATAATTTTTGGTGAAATCGGGGT
1 TAAAAATG-TAATTTTTGGTGAAATTAGGGT
18135801 TAAAA
1 TAAAA
18135806 TGGGATTTTG
Statistics
Matches: 91, Mismatches: 18, Indels: 27
0.67 0.13 0.20
Matches are distributed among these distances:
27 8 0.09
28 11 0.12
29 23 0.25
30 34 0.37
31 7 0.08
32 8 0.09
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (30 bp):
TAAAAATGTAATTTTTGGTGAAATTAGGGT
Found at i:18135726 original size:59 final size:59
Alignment explanation
Indices: 18135655--18135902 Score: 290
Period size: 59 Copynumber: 4.2 Consensus size: 59
18135645 TTCCGAGGTA
**
18135655 AAAAT-GTAATTTTTGGTGAAATTAGGGTTAAAAATGGAATTTTGGAAAGTTCGAGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGAGGGT
* * *
18135713 AAAACGGTGATTTTTGGTGAAATCGGGGCTAAAAAT-GAAGTTTTGGAAAGTTC-AGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAA-TTTTGGAAAGTTCGA-GGGT
* * *
18135772 AAAATGATAATTTTTGGTGAAATCGGGGTT-AAAATGGGATTTTGGAAAGTTCAGGGGTAAAGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTC-GAGG----GT
* * **
18135835 AAAATGGTAATTTTTTGTGAAATCGAGGTTAAAAATGGAATTTTGG-AAGTTTAAGGGT
1 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGAGGGT
18135893 AAAATGGTAA
1 AAAATGGTAA
18135903 AAATGGAATT
Statistics
Matches: 161, Mismatches: 18, Indels: 22
0.80 0.09 0.11
Matches are distributed among these distances:
58 38 0.24
59 73 0.45
62 2 0.01
63 34 0.21
64 14 0.09
ACGTcount: A:0.36, C:0.03, G:0.29, T:0.32
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGAGGGT
Found at i:18135911 original size:36 final size:37
Alignment explanation
Indices: 18135864--18135939 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
18135854 AAATCGAGGT
18135864 TAAAAATGGAATTTTGG-AAGTTTAAGGGTAAAATGG
1 TAAAAATGGAATTTTGGAAAGTTTAAGGGTAAAATGG
**
18135900 TAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGG
1 TAAAAATGGAATTTTGGAAAGTTTAAGGGTAAAATGG
18135937 TAA
1 TAA
18135940 TTCTTGGTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
36 17 0.46
37 20 0.54
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.30
Consensus pattern (37 bp):
TAAAAATGGAATTTTGGAAAGTTTAAGGGTAAAATGG
Found at i:18135963 original size:30 final size:30
Alignment explanation
Indices: 18135902--18136187 Score: 112
Period size: 29 Copynumber: 9.5 Consensus size: 30
18135892 TAAAATGGTA
* *
18135902 AAAATGG-AATTTT-G-GAAAGTTTGGGGGT
1 AAAATGGTAATTTTGGTGAAA-TTAGGGGTT
18135930 AAAATGGTAATTCTTGGTGAAATT-GGGGTT
1 AAAATGGTAATT-TTGGTGAAATTAGGGGTT
18135960 AAAAATGG-AATTTT-G-GAAAGTTTAGAGGTTTAGAATT
1 -AAAATGGTAATTTTGGTGAAA--TTAG-GG----G--TT
*
18135997 AAAATGGTAATTTTTGGTGAAATTAGGGTTT
1 AAAATGGTAA-TTTTGGTGAAATTAGGGGTT
*
18136028 AAAATTG-AATTTT-G-GAAAGTTTAGGGG-T
1 AAAATGGTAATTTTGGTGAAA--TTAGGGGTT
* * *
18136056 AAAATAGTAATTTTTGGT-AAAATCGGGGTT
1 AAAATGGTAA-TTTTGGTGAAATTAGGGGTT
* * *
18136086 AAAAAT-ATAATTTT-G-GAAAGTTCGGGGGT
1 -AAAATGGTAATTTTGGTGAAA-TTAGGGGTT
*
18136115 AAAATGGTAATTTTTGGTGAAA-T-CGGGTT
1 AAAATGGTAA-TTTTGGTGAAATTAGGGGTT
*
18136144 AAAAATGG-AATTTT-G-GAAAGTTCGAGGG-T
1 -AAAATGGTAATTTTGGTGAAA-TTAG-GGGTT
18136173 AAAATGG-AATTTTGG
1 AAAATGGTAATTTTGG
18136188 AAAGCTTGGG
Statistics
Matches: 205, Mismatches: 14, Indels: 77
0.69 0.05 0.26
Matches are distributed among these distances:
26 4 0.02
27 9 0.04
28 43 0.21
29 47 0.23
30 37 0.18
31 30 0.15
32 8 0.04
35 1 0.00
36 7 0.03
37 6 0.03
38 8 0.04
39 1 0.00
40 4 0.02
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.35
Consensus pattern (30 bp):
AAAATGGTAATTTTGGTGAAATTAGGGGTT
Found at i:18135970 original size:59 final size:59
Alignment explanation
Indices: 18135900--18136185 Score: 351
Period size: 59 Copynumber: 4.7 Consensus size: 59
18135890 GGTAAAATGG
*
18135900 TAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTCTTGGTGAAATTGGGGT
1 TAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGT
* *
18135959 TAAAAATGGAATTTTGGAAAGTTTAGAGGTTTAGAATTAAAATGGTAATTTTTGGTGAAATTAGG
1 TAAAAATGGAATTTTGGAAAGTTT-G-GG----G--GTAAAATGGTAATTTTTGGTGAAATTGGG
18136024 GT
58 GT
* * * * * *
18136026 TTAAAATTGAATTTTGGAAAGTTTAGGGGTAAAATAGTAATTTTTGGTAAAATCGGGGT
1 TAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGT
** * *
18136085 TAAAAATATAATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAA-TCGGGT
1 TAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGT
* *
18136143 TAAAAATGGAATTTTGGAAAGTTCGAGGGTAAAATGG-AATTTT
1 TAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTT
18136186 GGAAAGCTTG
Statistics
Matches: 196, Mismatches: 23, Indels: 18
0.83 0.10 0.08
Matches are distributed among these distances:
57 6 0.03
58 38 0.19
59 95 0.48
60 1 0.01
61 3 0.02
65 3 0.02
67 50 0.26
ACGTcount: A:0.36, C:0.02, G:0.27, T:0.35
Consensus pattern (59 bp):
TAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGT
Found at i:18136509 original size:32 final size:33
Alignment explanation
Indices: 18136463--18136530 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 33
18136453 TTATCGAGCC
*
18136463 AAATTAAAAATAATTAA-AAGTATGAAAGGGACT
1 AAATTAAAAATAATTAACAAATATGAAA-GGACT
*
18136496 AAATT-AAAATAATTAACAAATATGGAAGGACT
1 AAATTAAAAATAATTAACAAATATGAAAGGACT
18136528 AAA
1 AAA
18136531 CGCGCAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 19 0.59
33 13 0.41
ACGTcount: A:0.59, C:0.04, G:0.13, T:0.24
Consensus pattern (33 bp):
AAATTAAAAATAATTAACAAATATGAAAGGACT
Found at i:18137264 original size:3 final size:3
Alignment explanation
Indices: 18137252--18137302 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
18137242 ATACGCTTAA
* * *
18137252 TAT TATT TAT TAT TGT TA- TATT TAT TAT TAC TAT TAT TAT TAA TAT
1 TAT TA-T TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
18137298 TAT TA
1 TAT TA
18137303 AAATATTTAG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 2 0.05
3 32 0.82
4 5 0.13
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:18137288 original size:12 final size:11
Alignment explanation
Indices: 18137252--18137302 Score: 59
Period size: 12 Copynumber: 4.5 Consensus size: 11
18137242 ATACGCTTAA
18137252 TATTATT-TAT
1 TATTATTATAT
*
18137262 TATTGTTATATT
1 TATTATTATA-T
18137274 TATTATTACTAT
1 TATTATTA-TAT
18137286 TATTATTAATAT
1 TATTATT-ATAT
18137298 TATTA
1 TATTA
18137303 AAATATTTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 6 0.17
11 2 0.06
12 24 0.69
13 3 0.09
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (11 bp):
TATTATTATAT
Found at i:18138076 original size:17 final size:18
Alignment explanation
Indices: 18138054--18138094 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
18138044 TTTCAAATAC
*
18138054 TTTAAATTTAA-AATGAA
1 TTTAAATTTAATAATAAA
18138071 TTTAAATTTAATAATAAA
1 TTTAAATTTAATAATAAA
18138089 TTTAAA
1 TTTAAA
18138095 CCTAAAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
TTTAAATTTAATAATAAA
Found at i:18142734 original size:29 final size:28
Alignment explanation
Indices: 18142680--18142762 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 28
18142670 CGGATTTTTT
* *
18142680 ATTTTATTTTATTTTAT-TTTTAATATAA
1 ATTTTATTATATTTTATGTTAT-ATATAA
*
18142708 ATTTTTATTATATTTTATGTTATATATAT
1 A-TTTTATTATATTTTATGTTATATATAA
* ** *
18142737 ATTTGAAAATATTTTAGGTTATATAT
1 ATTTTATTATATTTTATGTTATATAT
18142763 TTTAAATGTG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
28 22 0.48
29 21 0.46
30 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (28 bp):
ATTTTATTATATTTTATGTTATATATAA
Found at i:18144401 original size:16 final size:17
Alignment explanation
Indices: 18144380--18144419 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
18144370 TTGAATTGAT
18144380 TTTAAATTT-ATTTAAA
1 TTTAAATTTGATTTAAA
*
18144396 TTTAAATTTGTTTTAAA
1 TTTAAATTTGATTTAAA
18144413 TTTAAAT
1 TTTAAAT
18144420 ACATTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
TTTAAATTTGATTTAAA
Found at i:18144435 original size:27 final size:27
Alignment explanation
Indices: 18144379--18144455 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
18144369 TTTGAATTGA
** * *
18144379 TTTTAAATTTATTTAAATTTAAATTTG
1 TTTTAAATTTAAATAAATTTAAAATAG
*
18144406 TTTTAAATTTAAATACATTTAAAATAG
1 TTTTAAATTTAAATAAATTTAAAATAG
* *
18144433 TTTCAAACTTAAAATCAAATTTA
1 TTTTAAA-TTTAAAT-AAATTTA
18144456 GAATGTCCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 28 0.70
28 6 0.15
29 6 0.15
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (27 bp):
TTTTAAATTTAAATAAATTTAAAATAG
Found at i:18146294 original size:30 final size:29
Alignment explanation
Indices: 18146258--18146480 Score: 154
Period size: 30 Copynumber: 7.6 Consensus size: 29
18146248 CCCTGGCAGT
18146258 CCCTAAACTATCCAAAAATTATATTTTGAC
1 CCCTAAACT-TCCAAAAATTATATTTTGAC
* *
18146288 CCCTAAACTTCTCCAAAATTACATTTTTGAC
1 CCCTAAACTTC-CAAAAATTATA-TTTTGAC
* * *
18146319 CCCAAAAATTCCAAAAATTACT-TTTTTAC
1 CCCTAAACTTCCAAAAATTA-TATTTTGAC
* *
18146348 ACCTAAACTTCCAAAAATTCCA-ATTTTAAC
1 CCCTAAACTTCCAAAAATT--ATATTTTGAC
* **
18146378 CCCAAAACTTCCAAAAATTACGTTTT-A-
1 CCCTAAACTTCCAAAAATTATATTTTGAC
* *
18146405 CCATCGAACTTCCAAAAATT-TCATTTTTGA-
1 CCCT-AAACTTCCAAAAATTAT-A-TTTTGAC
* * *
18146435 CCCTAAAACTTTCAAAAATTACATTTTTAAC
1 CCCT-AAACTTCCAAAAATTATA-TTTTGAC
*
18146466 CCC-GAACTTCCAAAA
1 CCCTAAACTTCCAAAA
18146481 TTTCCAATTT
Statistics
Matches: 153, Mismatches: 27, Indels: 27
0.74 0.13 0.13
Matches are distributed among these distances:
27 2 0.01
28 16 0.10
29 42 0.27
30 73 0.48
31 20 0.13
ACGTcount: A:0.39, C:0.26, G:0.03, T:0.32
Consensus pattern (29 bp):
CCCTAAACTTCCAAAAATTATATTTTGAC
Found at i:18146394 original size:59 final size:59
Alignment explanation
Indices: 18146262--18146515 Score: 237
Period size: 59 Copynumber: 4.3 Consensus size: 59
18146252 GGCAGTCCCT
* * * * * *
18146262 AAACTATCCAAAAATTA-TATTTTGACCCCTAAACTTCTCCAAAATTACATTTTTGACCCCA
1 AAACT-TCCAAAAATTACT-TTTTTACACCTAAACTTC-CAAAAATTCCAATTTTAACCCCA
*
18146323 AAAATTCCAAAAATTACTTTTTTACACCTAAACTTCCAAAAATTCCAATTTTAACCCCA
1 AAACTTCCAAAAATTACTTTTTTACACCTAAACTTCCAAAAATTCCAATTTTAACCCCA
* * * * * * *
18146382 AAACTTCCAAAAATTAC-GTTTTAC-CATCGAACTTCCAAAAATTTCATTTTTGACCCTA
1 AAACTTCCAAAAATTACTTTTTTACACCT-AAACTTCCAAAAATTCCAATTTTAACCCCA
* * ** * * *
18146440 AAACTTTCAAAAATTACATTTTTA-ACCCCGAACTTCCAAAATTTCCAATTTTAACCTCG
1 AAACTTCCAAAAATTACTTTTTTACA-CCTAAACTTCCAAAAATTCCAATTTTAACCCCA
*
18146499 AAACTTTCAAAAATTAC
1 AAACTTCCAAAAATTAC
18146516 CATTTTACTC
Statistics
Matches: 162, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
57 2 0.01
58 47 0.29
59 80 0.49
60 28 0.17
61 5 0.03
ACGTcount: A:0.39, C:0.25, G:0.03, T:0.33
Consensus pattern (59 bp):
AAACTTCCAAAAATTACTTTTTTACACCTAAACTTCCAAAAATTCCAATTTTAACCCCA
Found at i:18146431 original size:117 final size:118
Alignment explanation
Indices: 18146293--18146515 Score: 315
Period size: 117 Copynumber: 1.9 Consensus size: 118
18146283 TTGACCCCTA
* * *
18146293 AACTTCTCCAAAATTACATTTTTGACCCCAAAAATTCCAAAAATTAC-TTTTTTACACCTAAACT
1 AACTTCTCAAAAATTACATTTTTGACCCCAAAAATTCCAAAAATTACATTTTTAAC-CCCAAACT
18146357 TCCAAAAATTCCAATTTTAACCCCAAAACTTCCAAAAATTACGTTTTACCATCG
65 TCCAAAAATTCCAATTTTAACCCCAAAACTTCCAAAAATTACGTTTTACCATCG
* * * * *
18146411 AACTTC-CAAAAATTTCATTTTTGACCCTAAAACTTTCAAAAATTACATTTTTAACCCCGAACTT
1 AACTTCTCAAAAATTACATTTTTGACCCCAAAAATTCCAAAAATTACATTTTTAACCCCAAACTT
* * * *
18146475 CCAAAATTTCCAATTTTAACCTCGAAACTTTCAAAAATTAC
66 CCAAAAATTCCAATTTTAACCCCAAAACTTCCAAAAATTAC
18146516 CATTTTACTC
Statistics
Matches: 92, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
117 79 0.86
118 13 0.14
ACGTcount: A:0.39, C:0.25, G:0.03, T:0.33
Consensus pattern (118 bp):
AACTTCTCAAAAATTACATTTTTGACCCCAAAAATTCCAAAAATTACATTTTTAACCCCAAACTT
CCAAAAATTCCAATTTTAACCCCAAAACTTCCAAAAATTACGTTTTACCATCG
Found at i:18146491 original size:30 final size:28
Alignment explanation
Indices: 18146353--18146549 Score: 121
Period size: 30 Copynumber: 6.8 Consensus size: 28
18146343 TTTACACCTA
*
18146353 AACTTCCAAAAATTCCAATTTTAACCCCAA
1 AACTTCCAAAAATT-CAATTTTAACCCC-G
* *
18146383 AACTTCCAAAAATT-ACGTTTT-ACCATCG
1 AACTTCCAAAAATTCA-ATTTTAACC-CCG
* * **
18146411 AACTTCCAAAAATTTCATTTTTGACCCTAA
1 AACTTCCAAAAA-TTCAATTTTAACCC-CG
* *
18146441 AACTTTCAAAAATTACATTTTTAACCCCG
1 AACTTCCAAAAATT-CAATTTTAACCCCG
* *
18146470 AACTTCCAAAATTTCCAATTTTAACCTCG
1 AACTTCCAAAAATT-CAATTTTAACCCCG
* *
18146499 AAACTTTCAAAAATTACCATTTT-ACTCCCG
1 -AACTTCCAAAAATT-CAATTTTAAC-CCCG
* * * *
18146529 GACGTCCAAAAACTCTATTTT
1 AACTTCCAAAAATTCAATTTT
18146550 GATCCCGATT
Statistics
Matches: 132, Mismatches: 26, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
28 22 0.17
29 49 0.37
30 61 0.46
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (28 bp):
AACTTCCAAAAATTCAATTTTAACCCCG
Found at i:18146573 original size:117 final size:117
Alignment explanation
Indices: 18146309--18146549 Score: 290
Period size: 117 Copynumber: 2.1 Consensus size: 117
18146299 TCCAAAATTA
* * * * *
18146309 CATTTTTGACCCCAAAAATTCCAAAAATTACTTTTTTACACCTAAACTTCCAAAAATTCCAATTT
1 CATTTTTGACCCTAAAACTTTCAAAAATTACTTTTTAACACCCAAACTTCCAAAAATTCCAATTT
* * * *
18146374 TAACCCCAAAACTTCCAAAAATTACGTTTTACCATCGAACTTCCAAAAATTT
66 TAACCCCAAAACTTCCAAAAATTACATTTTACCACCGAACGTCCAAAAATCT
* *
18146426 CATTTTTGACCCTAAAACTTTCAAAAATTACATTTTTAAC-CCCGAACTTCCAAAATTTCCAATT
1 CATTTTTGACCCTAAAACTTTCAAAAATTAC-TTTTTAACACCCAAACTTCCAAAAATTCCAATT
* * * *
18146490 TTAACCTCGAAACTTTCAAAAATTACCATTTTACTC-CCGGACGTCCAAAAA-CT
65 TTAACCCCAAAACTTCCAAAAATTA-CATTTTAC-CACCGAACGTCCAAAAATCT
18146543 CTATTTT
1 C-ATTTT
18146550 GATCCCGATT
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
117 73 0.70
118 31 0.30
119 1 0.01
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.34
Consensus pattern (117 bp):
CATTTTTGACCCTAAAACTTTCAAAAATTACTTTTTAACACCCAAACTTCCAAAAATTCCAATTT
TAACCCCAAAACTTCCAAAAATTACATTTTACCACCGAACGTCCAAAAATCT
Found at i:18146580 original size:117 final size:117
Alignment explanation
Indices: 18146309--18146588 Score: 266
Period size: 117 Copynumber: 2.4 Consensus size: 117
18146299 TCCAAAATTA
* * * ** *
18146309 CATTTTTGACCCCAAAAATTCCAAAAATTACTTTTTTACACCT-AAACTTCCAAAAATTCCAATT
1 CATTTTTGACCCTAAAACTTTCAAAAATTACAGTTTTAC-CCTCGAACTTCCAAAAATTCCAATT
* * * *
18146373 TTAACCCCAAAACTTCCAAAAATTACGTTTTACCATCGAACTTCCAAAAATTT
65 TTAACCCCAAAACTTCCAAAAATTACATTTTACCACCGAACGTCCAAAAATCT
* *
18146426 CATTTTTGACCCTAAAACTTTCAAAAATTACATTTTTAACCC-CGAACTTCCAAAATTTCCAATT
1 CATTTTTGACCCTAAAACTTTCAAAAATTACAGTTTT-ACCCTCGAACTTCCAAAAATTCCAATT
* * * *
18146490 TTAACCTCGAAACTTTCAAAAATTACCATTTTACTC-CCGGACGTCCAAAAA-CT
65 TTAACCCCAAAACTTCCAAAAATTA-CATTTTAC-CACCGAACGTCCAAAAATCT
* *** * *
18146543 C-TATTTTGATCCC-GATTTTTTTAAAAATTACCGTTTTACCCTCGAA
1 CAT-TTTTGA-CCCTAAAACTTTCAAAAATTACAGTTTTACCCTCGAA
18146589 TGTCTAAAAT
Statistics
Matches: 135, Mismatches: 21, Indels: 14
0.79 0.12 0.08
Matches are distributed among these distances:
116 5 0.04
117 105 0.78
118 24 0.18
119 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (117 bp):
CATTTTTGACCCTAAAACTTTCAAAAATTACAGTTTTACCCTCGAACTTCCAAAAATTCCAATTT
TAACCCCAAAACTTCCAAAAATTACATTTTACCACCGAACGTCCAAAAATCT
Found at i:18147032 original size:96 final size:96
Alignment explanation
Indices: 18146904--18147078 Score: 232
Period size: 96 Copynumber: 1.8 Consensus size: 96
18146894 AAGACTTTAA
* *
18146904 AATCGAGGCAATATTCCTCTATTTCGAGTTTCGAAAATTTG-TGCCTTAACTCATTAGGTGCAAT
1 AATCGAGGCAATATTCCTCTACTTCGAGTTTCGAAAATTTGCT-CCTTAACTCACTAGGTGC-AT
* *
18146968 -TTTTCTTCAAATCGAAATAATCGAATACCCTT
64 CCTTTCTCCAAATCGAAATAATCGAATACCCTT
* *
18147000 AATCGAGGCAATGTTTCCTTCT-CTTCGA-TTTCGAAAATTTGCTCCTTAACTTACTAGGTGCAT
1 AATCGAGGCAAT-ATTCC-TCTACTTCGAGTTTCGAAAATTTGCTCCTTAACTCACTAGGTGCAT
18147063 CCTTTCTCCAAATCGA
64 CCTTTCTCCAAATCGA
18147079 GACAATCAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
95 2 0.03
96 54 0.78
97 10 0.14
98 3 0.04
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (96 bp):
AATCGAGGCAATATTCCTCTACTTCGAGTTTCGAAAATTTGCTCCTTAACTCACTAGGTGCATCC
TTTCTCCAAATCGAAATAATCGAATACCCTT
Found at i:18149297 original size:21 final size:22
Alignment explanation
Indices: 18149237--18149353 Score: 96
Period size: 21 Copynumber: 5.2 Consensus size: 22
18149227 AAAACGCATA
* *
18149237 AAAAAAATAACATAAACAACAA-
1 AAAAAAACAACA-AAATAACAAC
*
18149259 AAAAATAACAACTAAAATAGCAAC
1 AAAAA-AACAAC-AAAATAACAAC
18149283 AAAAAAA-AACAAAATAACAAC
1 AAAAAAACAACAAAATAACAAC
* * *
18149304 AAAAATATCAGCAAAAATAACACC
1 AAAAA-AACAAC-AAAATAACAAC
*
18149328 AAAACAACAA-AAAATAACAATC
1 AAAAAAACAACAAAATAACAA-C
18149350 AAAA
1 AAAA
18149354 CAGTAAAAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
21 24 0.31
22 14 0.18
23 19 0.25
24 20 0.26
ACGTcount: A:0.73, C:0.16, G:0.02, T:0.09
Consensus pattern (22 bp):
AAAAAAACAACAAAATAACAAC
Found at i:18149321 original size:45 final size:45
Alignment explanation
Indices: 18149237--18149353 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 45
18149227 AAAACGCATA
* * *
18149237 AAAAAAATAACATAAACAACAA-AAAAATAACAACTAAAATAGCAAC
1 AAAAAAA-AACA-AAATAACAACAAAAATAACAACAAAAATAACAAC
* * *
18149283 AAAAAAAAACAAAATAACAACAAAAATATCAGCAAAAATAACACC
1 AAAAAAAAACAAAATAACAACAAAAATAACAACAAAAATAACAAC
*
18149328 AAAACAACAA-AAAATAACAATCAAAA
1 AAAA-AAAAACAAAATAACAA-CAAAA
18149354 CAGTAAAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
44 8 0.13
45 37 0.61
46 16 0.26
ACGTcount: A:0.73, C:0.16, G:0.02, T:0.09
Consensus pattern (45 bp):
AAAAAAAAACAAAATAACAACAAAAATAACAACAAAAATAACAAC
Found at i:18149352 original size:22 final size:21
Alignment explanation
Indices: 18149316--18149381 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 21
18149306 AAATATCAGC
18149316 AAAAATAACACCAAAACAACA
1 AAAAATAACACCAAAACAACA
*
18149337 AAAAATAACAATCAAAACAGTA-A
1 AAAAATAAC-ACCAAAACA--ACA
*
18149360 AAAAATAGCACCAAAACAACA
1 AAAAATAACACCAAAACAACA
18149381 A
1 A
18149382 CATAATTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 1 0.03
21 11 0.29
22 16 0.42
23 9 0.24
24 1 0.03
ACGTcount: A:0.70, C:0.20, G:0.03, T:0.08
Consensus pattern (21 bp):
AAAAATAACACCAAAACAACA
Found at i:18151140 original size:17 final size:17
Alignment explanation
Indices: 18151118--18151213 Score: 81
Period size: 17 Copynumber: 5.7 Consensus size: 17
18151108 GCCCAGCAAG
18151118 ATTTAAATTTATTTTAA
1 ATTTAAATTTATTTTAA
* **
18151135 ATTTAAGTTTATAATAA
1 ATTTAAATTTATTTTAA
* *
18151152 GTTTAAATCTA-TTTAGA
1 ATTTAAATTTATTTTA-A
*
18151169 ATTTAAATTTATTATAA
1 ATTTAAATTTATTTTAA
* *
18151186 ATTTAAGTTTAAGTTT--
1 ATTTAAATTT-ATTTTAA
18151202 ATTTAAATTTAT
1 ATTTAAATTTAT
18151214 AATGTCCAAA
Statistics
Matches: 60, Mismatches: 16, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
15 1 0.02
16 11 0.18
17 42 0.70
18 6 0.10
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (17 bp):
ATTTAAATTTATTTTAA
Found at i:18151158 original size:34 final size:34
Alignment explanation
Indices: 18151118--18151216 Score: 98
Period size: 34 Copynumber: 2.9 Consensus size: 34
18151108 GCCCAGCAAG
*
18151118 ATTTAAATTTATTTTA-AATTTAAGTTTATAATAA
1 ATTTAAATTTA-TTTAGAATTTAAATTTATAATAA
* * *
18151152 GTTTAAATCTATTTAGAATTTAAATTTATTATAA
1 ATTTAAATTTATTTAGAATTTAAATTTATAATAA
*
18151186 ATTTAAGTTTAAGTTT---ATTTAAATTTATAAT
1 ATTTAAATTT-A-TTTAGAATTTAAATTTATAAT
18151217 GTCCAAATTA
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
33 18 0.33
34 32 0.59
35 1 0.02
36 3 0.06
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (34 bp):
ATTTAAATTTATTTAGAATTTAAATTTATAATAA
Found at i:18151188 original size:11 final size:10
Alignment explanation
Indices: 18151169--18151213 Score: 54
Period size: 10 Copynumber: 4.2 Consensus size: 10
18151159 TCTATTTAGA
18151169 ATTTAAATTT
1 ATTTAAATTT
18151179 ATTATAAATTT
1 ATT-TAAATTT
*
18151190 AAGTTTAAGTTT
1 -A-TTTAAATTT
18151202 ATTTAAATTT
1 ATTTAAATTT
18151212 AT
1 AT
18151214 AATGTCCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
10 13 0.43
11 8 0.27
12 7 0.23
13 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (10 bp):
ATTTAAATTT
Found at i:18151196 original size:23 final size:22
Alignment explanation
Indices: 18151170--18151212 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
18151160 CTATTTAGAA
18151170 TTTAAATTTATTATAAATTTAAG
1 TTTAAATTTATT-TAAATTTAAG
*
18151193 TTTAAGTTTATTTAAATTTA
1 TTTAAATTTATTTAAATTTA
18151213 TAATGTCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (22 bp):
TTTAAATTTATTTAAATTTAAG
Found at i:18157262 original size:22 final size:22
Alignment explanation
Indices: 18157233--18157284 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
18157223 CAAATGAACG
*
18157233 GAGAGCACCAAGGTGCTAAACA
1 GAGAGCACAAAGGTGCTAAACA
* * *
18157255 GAGGGCACAAATGTGCTAAATA
1 GAGAGCACAAAGGTGCTAAACA
18157277 GAGAGCAC
1 GAGAGCAC
18157285 TGTACGTGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.19, G:0.29, T:0.12
Consensus pattern (22 bp):
GAGAGCACAAAGGTGCTAAACA
Found at i:18162958 original size:29 final size:29
Alignment explanation
Indices: 18162909--18162964 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
18162899 GATACTTATG
*
18162909 TTTTTTATATCTCAAACTGATACCTAAAT
1 TTTTTTATAACTCAAACTGATACCTAAAT
*
18162938 TTTTTTATCAACT-AAATTGATACCTAA
1 TTTTTTAT-AACTCAAACTGATACCTAA
18162965 GTCAAATGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 21 0.88
30 3 0.12
ACGTcount: A:0.36, C:0.16, G:0.04, T:0.45
Consensus pattern (29 bp):
TTTTTTATAACTCAAACTGATACCTAAAT
Found at i:18164112 original size:2 final size:2
Alignment explanation
Indices: 18164105--18164148 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
18164095 AATAATATTA
18164105 AG AG AG AG AG AG AG AG AG AG -G AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
18164146 AG A
1 AG A
18164149 TATGGAACAG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:18170031 original size:20 final size:20
Alignment explanation
Indices: 18170008--18170045 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
18169998 TGAAGCTTTT
18170008 AAATATTAATTAAAAATATA
1 AAATATTAATTAAAAATATA
*
18170028 AAATATTTATTAAAAATA
1 AAATATTAATTAAAAATA
18170046 AAAGCTCGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AAATATTAATTAAAAATATA
Found at i:18172864 original size:28 final size:28
Alignment explanation
Indices: 18172824--18172882 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
18172814 TGCTCACCCC
18172824 TATTAAAGAGTAACATTTGAATAGATGG
1 TATTAAAGAGTAACATTTGAATAGATGG
18172852 TATTAAAGAGTAACATTTGAATAGATGG
1 TATTAAAGAGTAACATTTGAATAGATGG
18172880 TAT
1 TAT
18172883 AAGAACTACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.42, C:0.03, G:0.20, T:0.34
Consensus pattern (28 bp):
TATTAAAGAGTAACATTTGAATAGATGG
Found at i:18175769 original size:2 final size:2
Alignment explanation
Indices: 18175762--18175799 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
18175752 AACCATTAAT
18175762 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18175800 TTTATGTAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:18175804 original size:7 final size:7
Alignment explanation
Indices: 18175760--18175804 Score: 51
Period size: 6 Copynumber: 6.7 Consensus size: 7
18175750 ACAACCATTA
18175760 ATTATAT
1 ATTATAT
18175767 A-TATAT
1 ATTATAT
18175773 A-TATAT
1 ATTATAT
18175779 A-TATAT
1 ATTATAT
18175785 ATATATAT
1 AT-TATAT
18175793 ATTATAT
1 ATTATAT
*
18175800 TTTAT
1 ATTAT
18175805 GTAGCTCTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
6 18 0.51
7 10 0.29
8 7 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATTATAT
Found at i:18179008 original size:16 final size:15
Alignment explanation
Indices: 18178962--18179010 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
18178952 CAAATTTATT
18178962 TTAAAATTATTAAAA
1 TTAAAATTATTAAAA
** * *
18178977 TTATTATTTTTTAAA
1 TTAAAATTATTAAAA
18178992 TATAAAATTATTAAAA
1 T-TAAAATTATTAAAA
18179008 TTA
1 TTA
18179011 TTTATTAATT
Statistics
Matches: 25, Mismatches: 8, Indels: 2
0.71 0.23 0.06
Matches are distributed among these distances:
15 14 0.56
16 11 0.44
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TTAAAATTATTAAAA
Found at i:18179862 original size:13 final size:13
Alignment explanation
Indices: 18179844--18179896 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
18179834 ATTAATTTAT
18179844 ATTTTAAAAATTA
1 ATTTTAAAAATTA
*
18179857 ATTTTAATAATTTA
1 ATTTTAA-AAATTA
*
18179871 TATTTTAAAAAATA
1 -ATTTTAAAAATTA
*
18179885 ATTTTAATAATT
1 ATTTTAAAAATT
18179897 TTAAAATCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
13 17 0.52
14 9 0.27
15 7 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTTTAAAAATTA
Found at i:18179899 original size:29 final size:28
Alignment explanation
Indices: 18179822--18179897 Score: 120
Period size: 28 Copynumber: 2.8 Consensus size: 28
18179812 AAAAACCTAG
18179822 AAAAAAT--TTTTAATTAATTTATATTTT
1 AAAAAATAATTTTAA-TAATTTATATTTT
*
18179849 AAAAATTAATTTTAATAATTTATATTTT
1 AAAAAATAATTTTAATAATTTATATTTT
18179877 AAAAAATAATTTTAATAATTT
1 AAAAAATAATTTTAATAATTT
18179898 TAAAATCATT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 6 0.13
28 33 0.73
29 6 0.13
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (28 bp):
AAAAAATAATTTTAATAATTTATATTTT
Found at i:18182194 original size:21 final size:22
Alignment explanation
Indices: 18182170--18182219 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
18182160 ATAAAATAGG
*
18182170 TTATATATTA-GTTTTTTAATA
1 TTATATATTATGATTTTTAATA
*
18182191 TTATATATTATGATTTTTACTA
1 TTATATATTATGATTTTTAATA
18182213 TTCATAT
1 TT-ATAT
18182220 TTTAATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 10 0.40
22 11 0.44
23 4 0.16
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (22 bp):
TTATATATTATGATTTTTAATA
Found at i:18182324 original size:57 final size:56
Alignment explanation
Indices: 18182185--18182360 Score: 194
Period size: 57 Copynumber: 3.0 Consensus size: 56
18182175 TATTAGTTTT
* *
18182185 TTAATATTATATATTATGATTT-TTACTATTCATATTTTAATAATAATTATATTAAAAATGTTA
1 TTAA-ATTATATATTAT--TTTATTA--ATT-ATA-TTTAATAATAATTATATT-AAAATATAA
* * *
18182248 TTAAATTATATATTATTTTATTAAATTGTATTTAATAAGAATTATGTTAAAATATAA
1 TTAAATTATATATTATTTTATT-AATTATATTTAATAATAATTATATTAAAATATAA
* *
18182305 TTAAATTATTTATTATTTTATTAATTATATTTAATAATAATT-TATTAAAATTTAA
1 TTAAATTATATATTATTTTATTAATTATATTTAATAATAATTATATTAAAATATAA
18182360 T
1 T
18182361 AACAATAATC
Statistics
Matches: 101, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
55 12 0.12
56 18 0.18
57 28 0.28
58 16 0.16
59 2 0.02
60 6 0.06
61 2 0.02
62 13 0.13
63 4 0.04
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (56 bp):
TTAAATTATATATTATTTTATTAATTATATTTAATAATAATTATATTAAAATATAA
Found at i:18183015 original size:19 final size:21
Alignment explanation
Indices: 18182991--18183029 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
18182981 CAATTTATTT
18182991 TTATTT-TGGAAAA-CTATAC
1 TTATTTATGGAAAATCTATAC
*
18183010 TTATTTATGTAAAATCTATA
1 TTATTTATGGAAAATCTATA
18183030 AAATTATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 6 0.35
21 5 0.29
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (21 bp):
TTATTTATGGAAAATCTATAC
Found at i:18183284 original size:6 final size:6
Alignment explanation
Indices: 18183275--18183337 Score: 69
Period size: 6 Copynumber: 10.5 Consensus size: 6
18183265 TTTAATTTGG
*
18183275 ATTTAA ATTT-- ATCTTAA ATTTAA ATTTAA TTATTTAA ATTT-A CTTTAA
1 ATTTAA ATTTAA AT-TTAA ATTTAA ATTTAA --ATTTAA ATTTAA ATTTAA
18183323 ATTTAA ATTTAA ATT
1 ATTTAA ATTTAA ATT
18183338 AAAACTAAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
4 2 0.04
5 6 0.12
6 33 0.67
7 2 0.04
8 6 0.12
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (6 bp):
ATTTAA
Found at i:18183312 original size:31 final size:31
Alignment explanation
Indices: 18183275--18183334 Score: 104
Period size: 31 Copynumber: 1.9 Consensus size: 31
18183265 TTTAATTTGG
18183275 ATTTAAATTTA-TCTTAAATTTAAATTTAATT
1 ATTTAAATTTACT-TTAAATTTAAATTTAATT
18183306 ATTTAAATTTACTTTAAATTTAAATTTAA
1 ATTTAAATTTACTTTAAATTTAAATTTAA
18183335 ATTAAAACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 27 0.96
32 1 0.04
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (31 bp):
ATTTAAATTTACTTTAAATTTAAATTTAATT
Found at i:18183339 original size:11 final size:11
Alignment explanation
Indices: 18183277--18183340 Score: 56
Period size: 11 Copynumber: 5.5 Consensus size: 11
18183267 TAATTTGGAT
**
18183277 TTAAATTTATC
1 TTAAATTTAAA
18183288 TTAAATTTAAA
1 TTAAATTTAAA
18183299 TTTAATTATTTAAA
1 -TTAA--ATTTAAA
* *
18183313 TTTACTTTAAA
1 TTAAATTTAAA
18183324 TTTAAATTTAAA
1 -TTAAATTTAAA
18183336 TTAAA
1 TTAAA
18183341 ACTAAATACT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
11 20 0.47
12 13 0.30
13 3 0.07
14 7 0.16
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:18185295 original size:29 final size:29
Alignment explanation
Indices: 18185271--18185396 Score: 134
Period size: 30 Copynumber: 4.3 Consensus size: 29
18185261 CCAAAATTAT
*
18185271 ATTTTGACCCCAAAACTTTCTAAAAATTAC
1 ATTTTGACCCCAAAACTTTCT-AAAATCAC
* * *
18185301 ATTTTAACCCTAAAACTTT-TCCAAATCAC
1 ATTTTGACCCCAAAACTTTCT-AAAATCAC
18185330 A-TTTGACCCCAAAACTTTCTAAAGATCAC
1 ATTTTGACCCCAAAACTTTCTAAA-ATCAC
*
18185359 ATTTTGACCCC-AAACTTTTCCAAAATCA-
1 ATTTTGACCCCAAAAC-TTTCTAAAATCAC
*
18185387 TTTTTGACCC
1 ATTTTGACCC
18185397 TAAATTTTCT
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
28 26 0.32
29 23 0.28
30 33 0.40
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.33
Consensus pattern (29 bp):
ATTTTGACCCCAAAACTTTCTAAAATCAC
Found at i:18185299 original size:30 final size:30
Alignment explanation
Indices: 18185271--18185439 Score: 138
Period size: 29 Copynumber: 5.8 Consensus size: 30
18185261 CCAAAATTAT
*
18185271 ATTTTGACCCCAAAACTTTCTAAAAATTAC
1 ATTTTGACCCCAAAACTTTCTAAAAATCAC
* * **
18185301 ATTTTAACCCTAAAACTTT-TCCAAATCAC
1 ATTTTGACCCCAAAACTTTCTAAAAATCAC
*
18185330 A-TTTGACCCCAAAACTTTCTAAAGATCAC
1 ATTTTGACCCCAAAACTTTCTAAAAATCAC
*
18185359 ATTTTGACCCC-AAACTTT-TCCAAAATCA-
1 ATTTTGACCCCAAAACTTTCT-AAAAATCAC
* * * *
18185387 TTTTTGA-CCCTAAATTTTCTAGAAAAT-GC
1 ATTTTGACCCCAAAACTTTCTA-AAAATCAC
* **
18185416 ATTTTTACCCTGAAACTTTC-AAAA
1 ATTTTGACCCCAAAACTTTCTAAAA
18185440 TTACCATTTC
Statistics
Matches: 110, Mismatches: 21, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
27 3 0.03
28 31 0.28
29 41 0.37
30 35 0.32
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (30 bp):
ATTTTGACCCCAAAACTTTCTAAAAATCAC
Found at i:18185349 original size:58 final size:59
Alignment explanation
Indices: 18185257--18185434 Score: 193
Period size: 58 Copynumber: 3.1 Consensus size: 59
18185247 AGTCCTTAAA
* *
18185257 TTTTCCAAAATTATATTTTGACCCCAAAACTTTCTAAAAATTACATTTTAACCCTAAAAC
1 TTTTCCAAAATCACA-TTTGACCCCAAAACTTTCTAAAAATTACATTTTAACCCTAAAAC
* * * *
18185317 TTTTCC-AAATCACATTTGACCCCAAAACTTTCTAAAGATCACATTTTGACCC-CAAAC
1 TTTTCCAAAATCACATTTGACCCCAAAACTTTCTAAAAATTACATTTTAACCCTAAAAC
** * * * * *
18185374 TTTTCCAAAATCATTTTTGA-CCCTAAATTTTCTAGAAAA-TGCATTTTTACCCTGAAAC
1 TTTTCCAAAATCACATTTGACCCCAAAACTTTCTA-AAAATTACATTTTAACCCTAAAAC
18185432 TTT
1 TTT
18185435 CAAAATTACC
Statistics
Matches: 100, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
57 32 0.32
58 56 0.56
59 6 0.06
60 6 0.06
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (59 bp):
TTTTCCAAAATCACATTTGACCCCAAAACTTTCTAAAAATTACATTTTAACCCTAAAAC
Found at i:18197338 original size:38 final size:38
Alignment explanation
Indices: 18197237--18197346 Score: 106
Period size: 38 Copynumber: 2.9 Consensus size: 38
18197227 TCAGACCAAA
*
18197237 CAAGATCATTTCCAATCCGCTTGAAATTAAAGTA-GAG
1 CAAGATCATTTCCAATCCGCTTGAAATTGAAGTAGGAG
* *
18197274 -TAGATAACAAGTCTT-C-AT-CTC-TGAAATTGAAGTAGGAG
1 CAAGAT--C-A-T-TTCCAATCCGCTTGAAATTGAAGTAGGAG
18197312 CAAGATCATTTCCAATCCGCTTGAAATTGAAGTAG
1 CAAGATCATTTCCAATCCGCTTGAAATTGAAGTAG
18197347 AGAGGATAAC
Statistics
Matches: 57, Mismatches: 5, Indels: 21
0.69 0.06 0.25
Matches are distributed among these distances:
34 2 0.04
35 2 0.04
36 7 0.12
37 15 0.26
38 20 0.35
39 7 0.12
40 2 0.04
41 2 0.04
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.28
Consensus pattern (38 bp):
CAAGATCATTTCCAATCCGCTTGAAATTGAAGTAGGAG
Found at i:18197443 original size:68 final size:68
Alignment explanation
Indices: 18197251--18197799 Score: 749
Period size: 68 Copynumber: 7.9 Consensus size: 68
18197241 ATCATTTCCA
* * * * *
18197251 ATCCGCTTGAAATTAAAGTAGAGTAGATAACAAGTCTTCATCTCTGAAATTGAAGTAGGAGCAA-
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
18197315 GATC
66 G-TC
*
18197319 ATTTCCAATCCGCTTGAAATTGAAGTAGAGAGGATAACAAGTCTTTATCTCTGAAATTGAAGTAA
1 A--TCC--T---CTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAA
18197384 GAGCAACGTC
59 GAGCAACGTC
* * * *
18197394 ATCCTCTCGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGTAAAAGCAAT
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
18197459 GTC
66 GTC
* * * *
18197462 ATCCCCTTGAAATTGAAGTAGAGTGGATAATATGTCTTTATCTCTGAAATTTAAGTAAGAGCAAC
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
18197527 GTC
66 GTC
* * * *
18197530 ATCCTCTCGAAATTGAAGTAGAGTGGATAACATGTCTTTATCTCTGAAATTGAAGTAAAAGCAAT
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
18197595 GTC
66 GTC
*
18197598 ATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTTATCTCTGAAATTGAAGAAGTAAGAGC
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATT---GAAGTAAGAGC
*
18197663 AATGTC
63 AACGTC
* * *
18197669 ATCCCCTTGAAATTGAAGTAGAGTGGATAATACGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
1 ATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
18197734 GTC
66 GTC
* * *
18197737 ATCCTCTTGAAATTGAAGTAAAACTGGATATCAAGTCTTTATCTCTGAAATTGAAGTAAGAGC
1 ATCCTCTTGAAATTGAAGT-AGAGTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGC
18197800 TAGACAAGGC
Statistics
Matches: 433, Mismatches: 36, Indels: 23
0.88 0.07 0.05
Matches are distributed among these distances:
68 265 0.61
69 38 0.09
70 3 0.01
71 66 0.15
73 3 0.01
75 57 0.13
76 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (68 bp):
ATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTTATCTCTGAAATTGAAGTAAGAGCAAC
GTC
Found at i:18198196 original size:31 final size:30
Alignment explanation
Indices: 18198159--18198217 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 30
18198149 TTTAATTTGG
*
18198159 ATTTAAATTTA-TCTTAAATATAAATTTAATT
1 ATTTAAATTTACT-TTAAAT-TAAAATTAATT
18198190 ATTTAAATTTACTTTAAATTAAAATTAA
1 ATTTAAATTTACTTTAAATTAAAATTAA
18198218 AATACTAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 8 0.31
31 17 0.65
32 1 0.04
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (30 bp):
ATTTAAATTTACTTTAAATTAAAATTAATT
Found at i:18199258 original size:22 final size:23
Alignment explanation
Indices: 18199233--18199280 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
18199223 TAAAAAATAT
**
18199233 AATAAAAAGGTTTGTTTT-AAAA
1 AATAAAAAGGGATGTTTTGAAAA
18199255 AATAAAAAGGGATGTTTTGAAAA
1 AATAAAAAGGGATGTTTTGAAAA
18199278 AAT
1 AAT
18199281 CCCAGATCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.52, C:0.00, G:0.17, T:0.31
Consensus pattern (23 bp):
AATAAAAAGGGATGTTTTGAAAA
Found at i:18200146 original size:30 final size:30
Alignment explanation
Indices: 18200104--18200420 Score: 356
Period size: 30 Copynumber: 10.6 Consensus size: 30
18200094 AGTCCCTAAA
* *
18200104 TTTTCCAAAATTATATTTTGACCCCAAAAC
1 TTTTCCAAAATTACATTTTAACCCCAAAAC
* *
18200134 -TTTCTAAAAATTACATTTTAACCCTAAAAC
1 TTTTC-CAAAATTACATTTTAACCCCAAAAC
18200164 TTTTCCAAAATTACATTTTAACCCCAAAAC
1 TTTTCCAAAATTACATTTTAACCCCAAAAC
* * *
18200194 -TTTCTAAAAATCACATTTTAACCCCTAAAC
1 TTTTC-CAAAATTACATTTTAACCCCAAAAC
* *
18200224 TTTTCCAAAATTATATTTTAACCCTAAAAC
1 TTTTCCAAAATTACATTTTAACCCCAAAAC
**
18200254 TTTTCCAAAATTACATTTTAACCTAAAAAC
1 TTTTCCAAAATTACATTTTAACCCCAAAAC
*
18200284 TTTTCCAAAATTACATTTTGACCCCAAAAC
1 TTTTCCAAAATTACATTTTAACCCCAAAAC
*
18200314 TTTTCCAAAATTACATTTTGACCCCAAAAC
1 TTTTCCAAAATTACATTTTAACCCCAAAAC
* * * *
18200344 TTTTCCAAAATCATATTTTGACCCTAAAA-
1 TTTTCCAAAATTACATTTTAACCCCAAAAC
** * * *
18200373 TTTCTAAAAAATTGCATTTTTA-CCCGAAAC
1 TTT-TCCAAAATTACATTTTAACCCCAAAAC
*
18200403 -TTTCAAAAATTACCATTT
1 TTTTCCAAAATTA-CATTT
18200421 CACCCTCAAA
Statistics
Matches: 247, Mismatches: 33, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
28 8 0.03
29 23 0.09
30 208 0.84
31 8 0.03
ACGTcount: A:0.39, C:0.23, G:0.02, T:0.36
Consensus pattern (30 bp):
TTTTCCAAAATTACATTTTAACCCCAAAAC
Found at i:18200312 original size:19 final size:19
Alignment explanation
Indices: 18200288--18200342 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 19
18200278 AAAAACTTTT
18200288 CCAAAATTACATTTTGACC
1 CCAAAATTACATTTTGACC
18200307 CC-AAA--AC-TTTT----
1 CCAAAATTACATTTTGACC
18200318 CCAAAATTACATTTTGACC
1 CCAAAATTACATTTTGACC
18200337 CCAAAA
1 CCAAAA
18200343 CTTTTCCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 16
0.64 0.00 0.36
Matches are distributed among these distances:
11 2 0.07
12 3 0.11
14 2 0.07
15 8 0.29
16 2 0.07
18 3 0.11
19 8 0.29
ACGTcount: A:0.40, C:0.27, G:0.04, T:0.29
Consensus pattern (19 bp):
CCAAAATTACATTTTGACC
Found at i:18201706 original size:14 final size:15
Alignment explanation
Indices: 18201671--18201720 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 15
18201661 TTTATGCTTT
18201671 TTTTTTATAATTTTGAA
1 TTTTTTAT--TTTTGAA
18201688 TTTTTTATTTTTGAA
1 TTTTTTATTTTTGAA
18201703 TTTTTATAATTTTT-AA
1 TTTTT-T-ATTTTTGAA
18201719 TT
1 TT
18201721 ATTGTTGATG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
15 12 0.39
16 5 0.16
17 14 0.45
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (15 bp):
TTTTTTATTTTTGAA
Found at i:18207011 original size:22 final size:22
Alignment explanation
Indices: 18206986--18207027 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
18206976 TCTTTGAACA
*
18206986 TTAAACCTTAAATCTCGAATCC
1 TTAAACCTTAAACCTCGAATCC
*
18207008 TTAAACCTTGAACCTCGAAT
1 TTAAACCTTAAACCTCGAAT
18207028 TCAAAACCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (22 bp):
TTAAACCTTAAACCTCGAATCC
Found at i:18211467 original size:12 final size:13
Alignment explanation
Indices: 18211440--18211468 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
18211430 ATTTATGTAG
18211440 AAATAATTTGATT
1 AAATAATTTGATT
18211453 AAATAATTT-ATT
1 AAATAATTTGATT
18211465 AAAT
1 AAAT
18211469 GATTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (13 bp):
AAATAATTTGATT
Found at i:18214955 original size:15 final size:15
Alignment explanation
Indices: 18214935--18214974 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
18214925 AAAAAATTTT
* *
18214935 AAAATTATTATTTAA
1 AAAATTATGATTCAA
*
18214950 AAAATTATGATTCCA
1 AAAATTATGATTCAA
18214965 AAAATTATGA
1 AAAATTATGA
18214975 AAAGGAACTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (15 bp):
AAAATTATGATTCAA
Found at i:18215031 original size:9 final size:9
Alignment explanation
Indices: 18215006--18215038 Score: 50
Period size: 10 Copynumber: 3.7 Consensus size: 9
18214996 AAAAAATTAA
18215006 AATTTTATT
1 AATTTTATT
18215015 AGATTTTATT
1 A-ATTTTATT
18215025 AATTTTA-T
1 AATTTTATT
18215033 AATTTT
1 AATTTT
18215039 CTTTATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 7 0.30
9 7 0.30
10 9 0.39
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (9 bp):
AATTTTATT
Found at i:18219131 original size:17 final size:17
Alignment explanation
Indices: 18219092--18219131 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
18219082 AAATTTAAAT
18219092 ATATAATTTGTATATTA
1 ATATAATTTGTATATTA
*
18219109 AAATAATTT-TATATTCA
1 ATATAATTTGTATATT-A
18219126 ATATAA
1 ATATAA
18219132 ATATTACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (17 bp):
ATATAATTTGTATATTA
Found at i:18229218 original size:29 final size:29
Alignment explanation
Indices: 18229178--18229325 Score: 90
Period size: 29 Copynumber: 5.1 Consensus size: 29
18229168 ACCCGGGGGC
*
18229178 AAAATGGTAATTTT-GGTGTAATCGGGGTTT
1 AAAATGGCAATTTTAGGTG-AATCGGGG-TT
*** * *
18229208 AAAATGG-AATTTTAAAAGATTCGGGGGT
1 AAAATGGCAATTTTAGGTGAATCGGGGTT
*
18229236 AAAATGGCAATTTTCGGTGAAATCGGGGTT
1 AAAATGGCAATTTTAGGTG-AATCGGGGTT
* ** **
18229266 AAAACGG-AATTTTAGAAGTTTCGGGG-T
1 AAAATGGCAATTTTAGGTGAATCGGGGTT
* * *
18229293 -AAATGGTAATTTTTGATGAAATCGGGGTT
1 AAAATGGCAATTTTAGGTG-AATCGGGGTT
18229322 AAAA
1 AAAA
18229326 ACGGTATTTA
Statistics
Matches: 89, Mismatches: 22, Indels: 14
0.71 0.18 0.11
Matches are distributed among these distances:
26 5 0.06
27 10 0.11
28 20 0.22
29 29 0.33
30 25 0.28
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.32
Consensus pattern (29 bp):
AAAATGGCAATTTTAGGTGAATCGGGGTT
Found at i:18229268 original size:58 final size:59
Alignment explanation
Indices: 18229171--18229423 Score: 327
Period size: 58 Copynumber: 4.4 Consensus size: 59
18229161 TATGGATACC
* * * * * *
18229171 CGGGGGCAAAATGGTAATTTT-GGTGTAATCGGGGTTTAAAATGGAATTTTAAAAGATT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
* *
18229229 CGGGGGTAAAATGGCAATTTTCGGTGAAATCGGGGTT-AAAACGGAATTTTAGAAGTTT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
* * *
18229287 C-GGGGT-AAATGGTAATTTTTGATGAAATCGGGGTTAAAAACGGTA-TTTAGAAGCTT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
* * * *
18229343 CGAGGGTAAAATGGTAATTTTCGGTGAAATCGAGGTTTAAAAATGGATTTTTAGAAGCTT
1 CGGGGGTAAAATGGTAATTTTCGGTGAAATCG-GGGTTAAAAACGGAATTTTAGAAGCTT
18229403 CGGGGGTAAAATGGTAATTTT
1 CGGGGGTAAAATGGTAATTTT
18229424 TGGAAGTTTT
Statistics
Matches: 170, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
56 37 0.22
57 17 0.10
58 60 0.35
59 25 0.15
60 31 0.18
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.32
Consensus pattern (59 bp):
CGGGGGTAAAATGGTAATTTTCGGTGAAATCGGGGTTAAAAACGGAATTTTAGAAGCTT
Found at i:18229350 original size:114 final size:119
Alignment explanation
Indices: 18229171--18229425 Score: 342
Period size: 114 Copynumber: 2.2 Consensus size: 119
18229161 TATGGATACC
* * * * * *
18229171 CGGGGGCAAAATGGTAA-TTTTGGTGTAATCGGGGTTTAAAATGGAATTTTAAAAGATTCGGGGG
1 CGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAACGGAATTTTAAAAGATTCGAGGG
*
18229235 TAAAATGGCAATTTTCGGTGAAATCG-GGGTT-AAAACGGAATTTTAGAAGTTT
66 TAAAATGGCAATTTTCGGTGAAATCGAGGGTTAAAAACGGAATTTTAGAAGCTT
* * *
18229287 C-GGGGT-AAATGGTAATTTTTGATGAAATCGGGGTTAAAAACGGTA-TTTAGAAGCTTCGAGGG
1 CGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAACGGAATTTTAAAAGATTCGAGGG
* * * *
18229349 TAAAATGGTAATTTTCGGTGAAATCGAGGTTTAAAAATGGATTTTTAGAAGCTT
66 TAAAATGGCAATTTTCGGTGAAATCGAGGGTTAAAAACGGAATTTTAGAAGCTT
18229403 CGGGGGTAAAATGGTAATTTTTG
1 CGGGGGTAAAATGGTAATTTTTG
18229426 GAAGTTTTGG
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
114 48 0.40
115 32 0.27
116 20 0.17
117 5 0.04
118 15 0.12
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.32
Consensus pattern (119 bp):
CGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAACGGAATTTTAAAAGATTCGAGGG
TAAAATGGCAATTTTCGGTGAAATCGAGGGTTAAAAACGGAATTTTAGAAGCTT
Found at i:18229444 original size:30 final size:29
Alignment explanation
Indices: 18229405--18229662 Score: 304
Period size: 30 Copynumber: 8.7 Consensus size: 29
18229395 AGAAGCTTCG
18229405 GGGGT-AAAATGGTAATTTTTGG-AAGTTTT
1 GGGGTCAAAAT-GTAA-TTTTGGAAAGTTTT
* *
18229434 GGGGTCAAAATGTAATTTCGAAAAAGTTTT
1 GGGGTCAAAATGTAATTTTG-GAAAGTTTT
18229464 GGGGTCAAAATGTAATTTTGGAAATGTTTT
1 GGGGTCAAAATGTAATTTTGGAAA-GTTTT
18229494 GGGGTCAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGG-AAAGTTTT
*
18229524 GGGGTCAAAATATAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGG-AAAGTTTT
* * * *
18229554 GAGGTTAAGACGTAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGG-AAAGTTTT
* *
18229584 AGGGTCAAAATATAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGG-AAAGTTTT
* *
18229614 GGGGTTAAAATATAATTTTGGAAAAGTTTT
1 GGGGTCAAAATGTAATTTTGG-AAAGTTTT
* *
18229644 AGGGTCAAAATATAATTTT
1 GGGGTCAAAATGTAATTTT
18229663 TGGATTGTTT
Statistics
Matches: 204, Mismatches: 20, Indels: 9
0.88 0.09 0.04
Matches are distributed among these distances:
28 4 0.02
29 12 0.06
30 185 0.91
31 3 0.01
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (29 bp):
GGGGTCAAAATGTAATTTTGGAAAGTTTT
Found at i:18229474 original size:60 final size:59
Alignment explanation
Indices: 18229421--18229662 Score: 351
Period size: 60 Copynumber: 4.1 Consensus size: 59
18229411 AAATGGTAAT
* * *
18229421 TTTTGG-AAGTTTTGGGGTCAAAATGTAATTTCGAAAAAGTTTTGGGGTCAAAATGTAA
1 TTTTGGAAAGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAA
18229479 TTTTGGAAATGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAA
1 TTTTGGAAA-GTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAA
* * * * *
18229539 TTTTGGAAAAGTTTTGAGGTTAAGACGTAATTTTGGAAAAGTTTTAGGGTCAAAATATAA
1 TTTTGG-AAAGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAA
* * *
18229599 TTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTGGAAAAGTTTTAGGGTCAAAATATAA
1 TTTTGG-AAAGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAA
18229659 TTTT
1 TTTT
18229663 TGGATTGTTT
Statistics
Matches: 169, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
58 6 0.04
59 2 0.01
60 158 0.93
61 3 0.02
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (59 bp):
TTTTGGAAAGTTTTGGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAA
Found at i:18229484 original size:19 final size:19
Alignment explanation
Indices: 18229460--18229514 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
18229450 TTCGAAAAAG
18229460 TTTTGGGGTCAAAATGTAA
1 TTTTGGGGTCAAAATGTAA
18229479 TTTT--GG---AAATG---
1 TTTTGGGGTCAAAATGTAA
18229490 TTTTGGGGTCAAAATGTAA
1 TTTTGGGGTCAAAATGTAA
18229509 TTTTGG
1 TTTTGG
18229515 AAAAGTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 16
0.64 0.00 0.36
Matches are distributed among these distances:
11 4 0.14
13 2 0.07
14 5 0.18
16 5 0.18
17 2 0.07
19 10 0.36
ACGTcount: A:0.27, C:0.04, G:0.27, T:0.42
Consensus pattern (19 bp):
TTTTGGGGTCAAAATGTAA
Found at i:18229529 original size:90 final size:90
Alignment explanation
Indices: 18229405--18229662 Score: 360
Period size: 90 Copynumber: 2.9 Consensus size: 90
18229395 AGAAGCTTCG
* * *
18229405 GGGGT-AAAATGGTAATTTTTGG--AAGTTTTGGGGTCAAAATGTAATTTCGAAAAAGTTTTGGG
1 GGGGTCAAAAT-GTAA-TTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGG
*
18229467 GTCAAAATGTAATTTTGGAAATGTTTT
64 GTCAAAATGTAATTTTGGAAAAGTTTT
*
18229494 GGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGAGGT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGT
* * *
18229559 TAAGACGTAATTTTGGAAAAGTTTT
66 CAAAATGTAATTTTGGAAAAGTTTT
* * * *
18229584 AGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATATAATTTTGGAAAAGTTTTAGGGT
1 GGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGT
*
18229649 CAAAATATAATTTT
66 CAAAATGTAATTTT
18229663 TGGATTGTTT
Statistics
Matches: 149, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
88 6 0.04
89 9 0.06
90 134 0.90
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (90 bp):
GGGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTTGGGGT
CAAAATGTAATTTTGGAAAAGTTTT
Found at i:18230904 original size:19 final size:19
Alignment explanation
Indices: 18230863--18230905 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
18230853 TTACTAGCAT
*
18230863 TATTATTACTAATTATTGT
1 TATTATTACTAATTATTGA
*
18230882 TATTATTATTAATTTATT-A
1 TATTATTACTAA-TTATTGA
18230901 TATTA
1 TATTA
18230906 ATAGTTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (19 bp):
TATTATTACTAATTATTGA
Found at i:18230919 original size:16 final size:15
Alignment explanation
Indices: 18230874--18230920 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
18230864 ATTATTACTA
* *
18230874 ATTATTGTTATTATT
1 ATTAATGTTATTAAT
18230889 ATTAAT-TTATT-AT
1 ATTAATGTTATTAAT
18230902 ATTAATAGTTATTAAT
1 ATTAAT-GTTATTAAT
18230918 ATT
1 ATT
18230921 TTAGCTACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 7 0.26
14 5 0.19
15 10 0.37
16 5 0.19
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (15 bp):
ATTAATGTTATTAAT
Found at i:18231510 original size:12 final size:14
Alignment explanation
Indices: 18231491--18231528 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
18231481 TTTAGACTAT
18231491 TGTAATTGGGCC-C
1 TGTAATTGGGCCTC
*
18231504 T-TAATTGGGCCTT
1 TGTAATTGGGCCTC
18231517 TGTAATTGGGCC
1 TGTAATTGGGCC
18231529 GTGGGCCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 10 0.45
13 2 0.09
14 10 0.45
ACGTcount: A:0.16, C:0.18, G:0.29, T:0.37
Consensus pattern (14 bp):
TGTAATTGGGCCTC
Found at i:18231629 original size:6 final size:6
Alignment explanation
Indices: 18231606--18231713 Score: 89
Period size: 6 Copynumber: 18.0 Consensus size: 6
18231596 TATTTGGACT
* * **
18231606 TTTAAA TTTTAA TGTTAAA TTTAATA TTTTAA TTTTTA TTTAAA TTTAAA
1 TTTAAA TTTAAA T-TTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA
* * *
18231656 TTCAAA -TTAAA TTTAAATA TTTAAA TTTAAA -ATAAA TCTAAA TTTAAA
1 TTTAAA TTTAAA TTT-AA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
18231704 --TAAA TTTAAA
1 TTTAAA TTTAAA
18231714 ATCAATTTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
4 4 0.05
5 8 0.10
6 53 0.64
7 14 0.17
8 4 0.05
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:18231677 original size:25 final size:25
Alignment explanation
Indices: 18231649--18231698 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
18231639 TTTTATTTAA
* *
18231649 ATTTAAATTCAAATTAAATTTAAAT
1 ATTTAAATTCAAAATAAATCTAAAT
*
18231674 ATTTAAATTTAAAATAAATCTAAAT
1 ATTTAAATTCAAAATAAATCTAAAT
18231699 TTAAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTTAAATTCAAAATAAATCTAAAT
Found at i:18231677 original size:31 final size:31
Alignment explanation
Indices: 18231642--18231705 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
18231632 TTTTAATTTT
*
18231642 TATTTAAATTTAAATTCAAAT-TAAATTTAAA
1 TATTTAAATTTAAAAT-AAATCTAAATTTAAA
18231673 TATTTAAATTTAAAATAAATCTAAATTTAAA
1 TATTTAAATTTAAAATAAATCTAAATTTAAA
18231704 TA
1 TA
18231706 AATTTAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (31 bp):
TATTTAAATTTAAAATAAATCTAAATTTAAA
Found at i:18231692 original size:42 final size:43
Alignment explanation
Indices: 18231620--18231713 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 43
18231610 AATTTTAATG
* * ** *
18231620 TTAAATTT-AATATTTTAATTTTTATTTAAATTTAAATTCAAA
1 TTAAATTTAAATATTTTAAATTTAAAATAAATCTAAATTCAAA
*
18231662 TTAAATTTAAATA-TTTAAATTTAAAATAAATCTAAATTTAAA
1 TTAAATTTAAATATTTTAAATTTAAAATAAATCTAAATTCAAA
18231704 -TAAATTTAAA
1 TTAAATTTAAA
18231714 ATCAATTTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 10 0.22
42 31 0.69
43 4 0.09
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (43 bp):
TTAAATTTAAATATTTTAAATTTAAAATAAATCTAAATTCAAA
Found at i:18231715 original size:17 final size:16
Alignment explanation
Indices: 18231643--18231713 Score: 85
Period size: 17 Copynumber: 4.4 Consensus size: 16
18231633 TTTAATTTTT
18231643 ATTTAAATTTAAATTCAA
1 ATTTAAATTTAAA-T-AA
18231661 A-TTAAATTTAAAT--
1 ATTTAAATTTAAATAA
18231674 ATTTAAATTTAAAATAA
1 ATTTAAATTT-AAATAA
*
18231691 ATCTAAATTTAAATAA
1 ATTTAAATTTAAATAA
18231707 ATTTAAA
1 ATTTAAA
18231714 ATCAATTTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
13 1 0.02
14 8 0.17
15 4 0.09
16 13 0.28
17 20 0.43
18 1 0.02
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTTAAATTTAAATAA
Found at i:18232260 original size:2 final size:2
Alignment explanation
Indices: 18232253--18232292 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
18232243 GCTCTTTGTT
18232253 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18232293 CCGATTGAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:18232940 original size:48 final size:46
Alignment explanation
Indices: 18232879--18232982 Score: 113
Period size: 46 Copynumber: 2.3 Consensus size: 46
18232869 TTTATACTAT
* * * *
18232879 TTGATAGTAAAACAAATCAATACTATTATAATATTTGGTAGTACAAAA
1 TTGATATTGAAACAAA--AATACTATTACAATATTTGATAGTACAAAA
* * *
18232927 TTGATATTGAAACACAAATATTATTACAATATTTGATGGTACAAAA
1 TTGATATTGAAACAAAAATACTATTACAATATTTGATAGTACAAAA
18232973 TT-A-ATTGAAA
1 TTGATATTGAAA
18232983 ATTTAAGAAG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
44 7 0.14
45 1 0.02
46 28 0.57
48 13 0.27
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.35
Consensus pattern (46 bp):
TTGATATTGAAACAAAAATACTATTACAATATTTGATAGTACAAAA
Found at i:18232959 original size:46 final size:44
Alignment explanation
Indices: 18232897--18232982 Score: 118
Period size: 46 Copynumber: 1.9 Consensus size: 44
18232887 AAAACAAATC
* *
18232897 AATACTATTATAATATTTGGTAGTACAAAATTGATATTGAAACACA
1 AATACTATTACAATATTTGATAGTACAAAATT-A-ATTGAAACACA
* *
18232943 AATATTATTACAATATTTGATGGTACAAAATTAATTGAAA
1 AATACTATTACAATATTTGATAGTACAAAATTAATTGAAA
18232983 ATTTAAGAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 7 0.19
45 1 0.03
46 28 0.78
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.36
Consensus pattern (44 bp):
AATACTATTACAATATTTGATAGTACAAAATTAATTGAAACACA
Found at i:18242038 original size:16 final size:17
Alignment explanation
Indices: 18242009--18242046 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
18241999 CGTGTCCATC
* *
18242009 ATAAATATTTAAAAA-T
1 ATAAAAATTCAAAAATT
18242025 ATAAAAATTCAAAAATT
1 ATAAAAATTCAAAAATT
18242042 ATAAA
1 ATAAA
18242047 TATTTCTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAAAATTCAAAAATT
Found at i:18251217 original size:20 final size:20
Alignment explanation
Indices: 18251194--18251235 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
18251184 TTTAGTACTG
18251194 TTTTAAGTTAAAAAGTA-TTT
1 TTTTAAG-TAAAAAGTACTTT
* *
18251214 TTTTGAGTGAAAAGTACTTT
1 TTTTAAGTAAAAAGTACTTT
18251234 TT
1 TT
18251236 AAAAATACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.50
Consensus pattern (20 bp):
TTTTAAGTAAAAAGTACTTT
Found at i:18251623 original size:18 final size:18
Alignment explanation
Indices: 18251602--18251645 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 18
18251592 TCATATTTTA
18251602 TCACACAATATTATTG-GC
1 TCACAC-ATATTATTGTGC
18251620 TCACAC-TATTATTGTGC
1 TCACACATATTATTGTGC
*
18251637 TCGCACATA
1 TCACACATA
18251646 ACAATATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 8 0.35
17 7 0.30
18 8 0.35
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (18 bp):
TCACACATATTATTGTGC
Found at i:18253498 original size:38 final size:39
Alignment explanation
Indices: 18253436--18253512 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 39
18253426 TTACATGTTA
* * *
18253436 ATCTACTAAATAAGTAACATTAAATAGAAAATATAAAAT
1 ATCTACTAAATAAGCAAAACTAAATAGAAAATATAAAAT
18253475 ATCTACT-AATAAGCAAAACTAAATAGAAAATATAAAAT
1 ATCTACTAAATAAGCAAAACTAAATAGAAAATATAAAAT
18253513 GTTTACAGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 28 0.80
39 7 0.20
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (39 bp):
ATCTACTAAATAAGCAAAACTAAATAGAAAATATAAAAT
Found at i:18254008 original size:17 final size:17
Alignment explanation
Indices: 18253986--18254018 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18253976 CTTACGACAG
18253986 TAAAAATATAATTTCAT
1 TAAAAATATAATTTCAT
18254003 TAAAAATATAATTTCA
1 TAAAAATATAATTTCA
18254019 CTATTTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAAAATATAATTTCAT
Found at i:18256219 original size:15 final size:16
Alignment explanation
Indices: 18256201--18256233 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
18256191 TTTAGTAAAT
18256201 ATATATT-TTTAAAAA
1 ATATATTATTTAAAAA
*
18256216 ATATATTATTTAATAA
1 ATATATTATTTAAAAA
18256232 AT
1 AT
18256234 TGAAGAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATATTATTTAAAAA
Found at i:18256624 original size:14 final size:15
Alignment explanation
Indices: 18256605--18256635 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
18256595 AAAATCAAAT
18256605 TTTATA-TTAAATTA
1 TTTATACTTAAATTA
18256619 TTTATACTTAAATTA
1 TTTATACTTAAATTA
18256634 TT
1 TT
18256636 ATGTTTCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTATACTTAAATTA
Found at i:18259837 original size:65 final size:66
Alignment explanation
Indices: 18259741--18259885 Score: 229
Period size: 65 Copynumber: 2.2 Consensus size: 66
18259731 ATATTCAATA
* * * *
18259741 ACTTTATCATGTTCTACCTAGAAGTGTTTATGGGTCAAGTTTAAGCGTGATACTAACACATTTTA
1 ACTTAATCAAGTTCTACCTAAAAGTGTTTATGGGTCAAGTTTAAGCATGATACTAACACATTTTA
18259806 T
66 T
* *
18259807 ACTTAATCAAGTT-TACCTAAAAGTGTTTATGGGTCAAGTTTAAGCATGATATTAACATATTTTA
1 ACTTAATCAAGTTCTACCTAAAAGTGTTTATGGGTCAAGTTTAAGCATGATACTAACACATTTTA
18259871 T
66 T
18259872 ACTTAATCAAGTTC
1 ACTTAATCAAGTTC
18259886 AGCTCGACCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
65 61 0.85
66 11 0.15
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (66 bp):
ACTTAATCAAGTTCTACCTAAAAGTGTTTATGGGTCAAGTTTAAGCATGATACTAACACATTTTA
T
Found at i:18260003 original size:23 final size:22
Alignment explanation
Indices: 18259960--18260005 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
18259950 AAGTCTACTC
* *
18259960 AAATTATTTTTAAATTTTTTTA
1 AAATTATATTTAAATTATTTTA
*
18259982 AAATATATATTTATATTATTTTA
1 AAAT-TATATTTAAATTATTTTA
18260005 A
1 A
18260006 TTTAATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
AAATTATATTTAAATTATTTTA
Found at i:18276132 original size:14 final size:14
Alignment explanation
Indices: 18276098--18276139 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
18276088 AAACATTTAT
18276098 ATAAAATATTTATCA
1 ATAAAAT-TTTATCA
18276113 AT-AAATTTTA-CAA
1 ATAAAATTTTATC-A
18276126 ATAAAATTTTATCA
1 ATAAAATTTTATCA
18276140 TTTAACTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 7 0.29
14 13 0.54
15 3 0.12
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (14 bp):
ATAAAATTTTATCA
Found at i:18289855 original size:21 final size:18
Alignment explanation
Indices: 18289818--18289864 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 18
18289808 TGATCAAATT
18289818 GAAGAGAAAAGGAAAAGA
1 GAAGAGAAAAGGAAAAGA
18289836 GAAGAGCAAAGAGTGAAAAGA
1 GAAGAG-AAA-AG-GAAAAGA
18289857 GAAG-GAAA
1 GAAGAGAAA
18289865 TCAGCCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 6 0.23
19 6 0.23
20 3 0.12
21 11 0.42
ACGTcount: A:0.62, C:0.02, G:0.34, T:0.02
Consensus pattern (18 bp):
GAAGAGAAAAGGAAAAGA
Found at i:18290747 original size:25 final size:24
Alignment explanation
Indices: 18290710--18290832 Score: 139
Period size: 23 Copynumber: 5.2 Consensus size: 24
18290700 ACACTAGCGC
18290710 GCTCTCTGT-TTAGCA-TGTCTCGT
1 GCTCTCTGTATTAGCACTGTCT-GT
*
18290733 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG-TATTAGCACTGTCTGT
*
18290758 GCTCTCTG-ATTAGCACTGTATGT
1 GCTCTCTGTATTAGCACTGTCTGT
18290781 GCTCTCTGTTATTAGCACT-TCGTGT
1 GCTCTCTG-TATTAGCACTGTC-TGT
* *
18290806 GCTCTCTG-ATTAGCACTTTGTGT
1 GCTCTCTGTATTAGCACTGTCTGT
18290829 GCTC
1 GCTC
18290833 AGTACTTTGT
Statistics
Matches: 89, Mismatches: 4, Indels: 14
0.83 0.04 0.13
Matches are distributed among these distances:
23 46 0.52
24 3 0.03
25 36 0.40
26 4 0.04
ACGTcount: A:0.12, C:0.24, G:0.22, T:0.42
Consensus pattern (24 bp):
GCTCTCTGTATTAGCACTGTCTGT
Found at i:18290783 original size:48 final size:48
Alignment explanation
Indices: 18290710--18290832 Score: 178
Period size: 48 Copynumber: 2.6 Consensus size: 48
18290700 ACACTAGCGC
* *
18290710 GCTCTCTGTTTAGCA-TGTCTCGTGCTCTCTGTTATTAGCACTGT-GTGT
1 GCTCTCTGATTAGCACTGTAT-GTGCTCTCTGTTATTAGCACT-TCGTGT
18290758 GCTCTCTGATTAGCACTGTATGTGCTCTCTGTTATTAGCACTTCGTGT
1 GCTCTCTGATTAGCACTGTATGTGCTCTCTGTTATTAGCACTTCGTGT
* *
18290806 GCTCTCTGATTAGCACTTTGTGTGCTC
1 GCTCTCTGATTAGCACTGTATGTGCTC
18290833 AGTACTTTGT
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
47 1 0.01
48 64 0.93
49 4 0.06
ACGTcount: A:0.12, C:0.24, G:0.22, T:0.42
Consensus pattern (48 bp):
GCTCTCTGATTAGCACTGTATGTGCTCTCTGTTATTAGCACTTCGTGT
Found at i:18290863 original size:39 final size:39
Alignment explanation
Indices: 18290797--18290871 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
18290787 TGTTATTAGC
*
18290797 ACTTCGTGTGCTCTCTGATTAGCACTTTGTGTGCTCAGT
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAGT
* *
18290836 ACTTTGTGTACTCTCTGATTAGTACTTTGTGTGCTC
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTC
18290872 TCTGTTACCC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.44
Consensus pattern (39 bp):
ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAGT
Found at i:18297430 original size:21 final size:20
Alignment explanation
Indices: 18297382--18297450 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
18297372 TAAATGATAA
18297382 AATATTTTATTTAATTATTT
1 AATATTTTATTTAATTATTT
*
18297402 AATATTTTATTATGATTATTT
1 AATATTTTATT-TAATTATTT
* *
18297423 --TATTTT-TTTCATT-TTC
1 AATATTTTATTTAATTATTT
18297439 AATAGTTTTATT
1 AATA-TTTTATT
18297451 CTCTTAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
16 2 0.05
17 4 0.10
18 4 0.10
19 10 0.24
20 13 0.32
21 8 0.20
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (20 bp):
AATATTTTATTTAATTATTT
Found at i:18298022 original size:8 final size:9
Alignment explanation
Indices: 18297990--18298028 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
18297980 TTTTAATCCT
18297990 AATTATAAA
1 AATTATAAA
18297999 AATTATAAA
1 AATTATAAA
*
18298008 AATATTTAAA
1 AAT-TATAAA
*
18298018 AATTTTAAA
1 AATTATAAA
18298027 AA
1 AA
18298029 GTAAATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
AATTATAAA
Found at i:18300956 original size:44 final size:45
Alignment explanation
Indices: 18300891--18300976 Score: 129
Period size: 44 Copynumber: 1.9 Consensus size: 45
18300881 TTACTAAATA
*
18300891 TTTAACTAAATTATATAATATTTATTATAAATTATTTATACTACT
1 TTTAACTAAATTACATAATATTTATTATAAATTATTTATACTACT
* * *
18300936 TTTAACT-AATTACATGATATTTATTATTAGTTATTTATACT
1 TTTAACTAAATTACATAATATTTATTATAAATTATTTATACT
18300977 TGATCAATCC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 30 0.81
45 7 0.19
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.52
Consensus pattern (45 bp):
TTTAACTAAATTACATAATATTTATTATAAATTATTTATACTACT
Found at i:18308538 original size:16 final size:15
Alignment explanation
Indices: 18308519--18308548 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
18308509 ATAAATTTAA
18308519 TAATTATATTTTAATT
1 TAATTAT-TTTTAATT
18308535 TAATTATTTTTAAT
1 TAATTATTTTTAAT
18308549 CCCTGTAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TAATTATTTTTAATT
Found at i:18309017 original size:11 final size:11
Alignment explanation
Indices: 18309001--18309074 Score: 60
Period size: 11 Copynumber: 6.5 Consensus size: 11
18308991 TATAAATCTT
*
18309001 AATTTATTTTA
1 AATTTAATTTA
*
18309012 AATTTAATATA
1 AATTTAATTTA
18309023 AATTTAAATTTA
1 AATTT-AATTTA
*
18309035 AA-TTCATTTA
1 AATTTAATTTA
18309045 GAATTTAAATTTA
1 -AATTT-AATTTA
* * *
18309058 TATTAAATTTG
1 AATTTAATTTA
18309069 AATTTA
1 AATTTA
18309075 CTTTGAATTA
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
10 5 0.10
11 27 0.55
12 12 0.24
13 5 0.10
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (11 bp):
AATTTAATTTA
Found at i:18309030 original size:6 final size:6
Alignment explanation
Indices: 18309008--18309074 Score: 61
Period size: 6 Copynumber: 11.7 Consensus size: 6
18308998 CTTAATTTAT
* *
18309008 TTTAAA TTT-AA TATAAA TTTAAA TTTAAA -TT-CA TTTAGAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA-AA TTTAAA
* *
18309054 TTTATA -TTAAA TTTGAA TTTA
1 TTTAAA TTTAAA TTTAAA TTTA
18309075 CTTTGAATTA
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
4 1 0.02
5 12 0.25
6 30 0.62
7 5 0.10
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (6 bp):
TTTAAA
Found at i:18309049 original size:17 final size:16
Alignment explanation
Indices: 18309008--18309103 Score: 68
Period size: 17 Copynumber: 5.8 Consensus size: 16
18308998 CTTAATTTAT
**
18309008 TTTAAATTTAATATAAA
1 TTTAAATTTAA-ATTCA
18309025 TTTAAATTTAAATTCA
1 TTTAAATTTAAATTCA
*
18309041 TTTAGAATTTAAATTTA
1 TTTA-AATTTAAATTCA
* *
18309058 TATTAAATTTGAATTTA
1 T-TTAAATTTAAATTCA
* * *
18309075 CTTTGAA-TTAAAATGA
1 -TTTAAATTTAAATTCA
18309091 TTTAAATATTAAA
1 TTTAAAT-TTAAA
18309104 AGTTCAAAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
15 5 0.08
16 13 0.20
17 43 0.66
18 4 0.06
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (16 bp):
TTTAAATTTAAATTCA
Found at i:18309071 original size:23 final size:23
Alignment explanation
Indices: 18309008--18309074 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 23
18308998 CTTAATTTAT
*
18309008 TTTAAATTTAATATA-AATTTAAA
1 TTTAAA-TTAATTTAGAATTTAAA
*
18309031 TTTAAATTCATTTAGAATTTAAA
1 TTTAAATTAATTTAGAATTTAAA
*
18309054 TTTATATTAAATTT-GAATTTA
1 TTTAAATT-AATTTAGAATTTA
18309075 CTTTGAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
22 6 0.16
23 28 0.74
24 4 0.11
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (23 bp):
TTTAAATTAATTTAGAATTTAAA
Found at i:18310912 original size:30 final size:30
Alignment explanation
Indices: 18310877--18310981 Score: 90
Period size: 30 Copynumber: 3.5 Consensus size: 30
18310867 TAAACTGTTT
18310877 AAAAATTATATTTTAACCCTAAAACTTCTC
1 AAAAATTATATTTTAACCCTAAAACTTCTC
* ** * *
18310907 CAAAATTATATTTT-GGCTTCAAGACTT-TC
1 AAAAATTATATTTTAACCCT-AAAACTTCTC
* *
18310936 TAAAAATTACATTTTGACCCCT-AAACTTCTC
1 -AAAAATTATATTTT-AACCCTAAAACTTCTC
*
18310967 TAAAATTATATTTTA
1 AAAAATTATATTTTA
18310982 GCCAAAAATT
Statistics
Matches: 57, Mismatches: 13, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
29 5 0.09
30 48 0.84
31 2 0.04
32 2 0.04
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (30 bp):
AAAAATTATATTTTAACCCTAAAACTTCTC
Found at i:18310972 original size:60 final size:58
Alignment explanation
Indices: 18310876--18311013 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 58
18310866 CTAAACTGTT
* * * * *
18310876 TAAAAATTATATTTTAACCCTAAAACTTCTCCAAAATTATATTTTGGCTTCAAGACTTTC
1 TAAAAATTACATTTTACCCCTAAAACTTCTCCAAAATTATATTTTAGC--CAAAAATTTC
* *
18310936 TAAAAATTACATTTTGACCCCT-AAACTTCTCTAAAATTATATTTTAGCCAAAAATTTT
1 TAAAAATTACATTTT-ACCCCTAAAACTTCTCCAAAATTATATTTTAGCCAAAAATTTC
18310994 TAAAAATTACATTTTTACCC
1 TAAAAATTACA-TTTTACCC
18311014 TTAAGTTTTC
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
58 22 0.32
59 4 0.06
60 38 0.55
61 5 0.07
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (58 bp):
TAAAAATTACATTTTACCCCTAAAACTTCTCCAAAATTATATTTTAGCCAAAAATTTC
Found at i:18311028 original size:29 final size:29
Alignment explanation
Indices: 18310996--18311179 Score: 103
Period size: 29 Copynumber: 6.3 Consensus size: 29
18310986 AAAATTTTTA
*
18310996 AAAATTACATTTTTACCCTTAAGTTTT-CC
1 AAAATTACATTTTTACCCCTAA-TTTTACC
*
18311025 AAAATT-CTATTTTTGCCCCTAATTTTACCC
1 AAAATTAC-ATTTTTACCCCTAATTTTA-CC
* * *
18311055 AAAATTACCA-TTTTACCCCCAAACTTT-CT
1 AAAATTA-CATTTTTA-CCCCTAATTTTACC
*
18311084 AAAATT-CTATTTTAAACCCC-AATTTTACC
1 AAAATTAC-ATTTT-TACCCCTAATTTTACC
* * * *
18311113 AAAATTACCGTTTTAACCCCAAAACTTT-CC
1 AAAATTA-CATTTTTACCCC-TAATTTTACC
* ** * *
18311143 AAAATTCCATTTAAAACCCTAATTTCACC
1 AAAATTACATTTTTACCCCTAATTTTACC
18311172 AAAATTAC
1 AAAATTAC
18311180 CATTCAACCC
Statistics
Matches: 121, Mismatches: 19, Indels: 30
0.71 0.11 0.18
Matches are distributed among these distances:
27 1 0.01
28 15 0.12
29 63 0.52
30 25 0.21
31 16 0.13
32 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.36
Consensus pattern (29 bp):
AAAATTACATTTTTACCCCTAATTTTACC
Found at i:18311088 original size:59 final size:58
Alignment explanation
Indices: 18310938--18311247 Score: 249
Period size: 59 Copynumber: 5.3 Consensus size: 58
18310928 AGACTTTCTA
* * ***
18310938 AAAATTA-CATTTTGACCCCTAAACTTCTCTAAAATTATATTTTAGCCAAAAATTTTTA--
1 AAAATTACCATTTT-ACCCCTAAACTT-TCTAAAATTCTATTTTAACCCCTAA-TTTTACC
* ** * **
18310996 AAAATTA-CATTTTTACCCTTAAGTTTTCCAAAATTCTATTTTTGCCCCTAATTTTACCC
1 AAAATTACCA-TTTTACCCCTAAACTTTCTAAAATTCTATTTTAACCCCTAATTTTA-CC
*
18311055 AAAATTACCATTTTACCCCCAAACTTTCTAAAATTCTATTTTAAACCCC-AATTTTACC
1 AAAATTACCATTTTACCCCTAAACTTTCTAAAATTCTATTTT-AACCCCTAATTTTACC
* * * * * * *
18311113 AAAATTACCGTTTTAACCCCAAAACTTTCCAAAATTCCATTTAAAACCCTAATTTCACC
1 AAAATTACCATTTT-ACCCCTAAACTTTCTAAAATTCTATTTTAACCCCTAATTTTACC
* * * * *
18311172 AAAATTACCA-TTCAACCCTAAACTCTCTAAAATT-TCATTTTTAACCTC-GATTTTACC
1 AAAATTACCATTTTACCCCTAAACTTTCTAAAATTCT-A-TTTTAACCCCTAATTTTACC
* *
18311229 AAAATTAACATTTTGCCCC
1 AAAATTACCATTTTACCCC
18311248 CGAGCATCCA
Statistics
Matches: 202, Mismatches: 39, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
56 5 0.02
57 53 0.26
58 52 0.26
59 86 0.43
60 6 0.03
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.37
Consensus pattern (58 bp):
AAAATTACCATTTTACCCCTAAACTTTCTAAAATTCTATTTTAACCCCTAATTTTACC
Found at i:18322866 original size:50 final size:50
Alignment explanation
Indices: 18322812--18323268 Score: 156
Period size: 50 Copynumber: 9.1 Consensus size: 50
18322802 GGCAGATTTA
* * * *
18322812 GTACCGCAAAAACACAAAAGGGAAAGGTCTACGTCACAATGGTGGGCCGT
1 GTACCGCAAAAACACAAAAGGGAAAGATCTAAGTCGCAATGGCGGGCCGT
* * ** * * **
18322862 GTACCTCAGAAACATGAAAGGGAAAGATCTAAGACCGCAATGGCAGATC-T
1 GTACCGCAAAAACACAAAAGGGAAAGATCTAAG-TCGCAATGGCGGGCCGT
* * * *
18322912 AGTACCGC-AAAACACAACAGGGAAAGGTCTAAGTCGTAACGGCGGGCCGT
1 -GTACCGCAAAAACACAAAAGGGAAAGATCTAAGTCGCAATGGCGGGCCGT
* * ** * * * ** *
18322962 GTACCTCAGAAACATGAAAGGGAAAGATCTAAGACCGTAACGGCAGATCC-A
1 GTACCGCAAAAACACAAAAGGGAAAGATCTAAG-TCGCAATGGC-GGGCCGT
* * * * * * **
18323013 GTACCGC-CAAACACAAAAGAGAAAGGTTTAAGTCGCAACGACGGAACGT
1 GTACCGCAAAAACACAAAAGGGAAAGATCTAAGTCGCAATGGCGGGCCGT
** * * ** * * * ** *
18323062 GTACCTTAGAAGCA-TGAAGGGAAATATCTAAGACCGCAACGGCAGATCC-A
1 GTACCGCAAAAACACAAAAGGGAAAGATCTAAG-TCGCAATGGC-GGGCCGT
* * ** ****
18323112 GTACCGCAAAAA-ACATAACAGGGAAAGGTTTAAGTCGCAACAGCAAATCGT
1 GTACCGCAAAAACACA-AA-AGGGAAAGATCTAAGTCGCAATGGCGGGCCGT
* * ** ** *
18323163 GTACCTCAGAAACATGAAAGGGAAAGATCTAAGATCGCAATGGCAGATCC-A
1 GTACCGCAAAAACACAAAAGGGAAAGATCTAAG-TCGCAATGGC-GGGCCGT
* * * * * * *
18323214 GTACCGCCAAAACCCAAAAGGGAAAGGTTTAAGTCGCAACGACGGACCGT
1 GTACCGCAAAAACACAAAAGGGAAAGATCTAAGTCGCAATGGCGGGCCGT
18323264 GTACC
1 GTACC
18323269 TCAGAAGCAT
Statistics
Matches: 285, Mismatches: 104, Indels: 36
0.67 0.24 0.08
Matches are distributed among these distances:
48 2 0.01
49 43 0.15
50 136 0.48
51 86 0.30
52 18 0.06
ACGTcount: A:0.39, C:0.22, G:0.25, T:0.14
Consensus pattern (50 bp):
GTACCGCAAAAACACAAAAGGGAAAGATCTAAGTCGCAATGGCGGGCCGT
Found at i:18322965 original size:100 final size:100
Alignment explanation
Indices: 18322777--18323384 Score: 765
Period size: 100 Copynumber: 6.0 Consensus size: 100
18322767 CATGAAACAC
* ** *
18322777 AAAGGGAAAGATCTAAGACCGCAAAGGCAGATTTAGTACCGCAAAAACACAAAAGGGAAAGGTCT
1 AAAGGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGC-AAAACACAAAAGGGAAAGGTTT
* * * ** *
18322842 ACGTCACAATGGTGGGCCGTGTACCTCAGAAACATG
65 AAGTCGCAACGACGGACCGTGTACCTCAGAAACATG
* * *
18322878 AAAGGGAAAGATCTAAGACCGCAATGGCAGATCTAGTACCGCAAAACACAACAGGGAAAGGTCTA
1 AAAGGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAACACAAAAGGGAAAGGTTTA
* * *
18322943 AGTCGTAACGGCGGGCCGTGTACCTCAGAAACATG
66 AGTCGCAACGACGGACCGTGTACCTCAGAAACATG
* * * *
18322978 AAAGGGAAAGATCTAAGACCGTAACGGCAGATCCAGTACCGCCAAACACAAAAGAGAAAGGTTTA
1 AAAGGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAACACAAAAGGGAAAGGTTTA
* * *
18323043 AGTCGCAACGACGGAACGTGTACCTTAGAAGCATG
66 AGTCGCAACGACGGACCGTGTACCTCAGAAACATG
* * *
18323078 -AAGGGAAATATCTAAGACCGCAACGGCAGATCCAGTACCGCAAAAAACATAACAGGGAAAGGTT
1 AAAGGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAACACA-AA-AGGGAAAGGTT
** *
18323142 TAAGTCGCAAC-AGCAAATCGTGTACCTCAGAAACATG
64 TAAGTCGCAACGA-CGGACCGTGTACCTCAGAAACATG
* *
18323179 AAAGGGAAAGATCTAAGATCGCAATGGCAGATCCAGTACCGCCAAAACCCAAAAGGGAAAGGTTT
1 AAAGGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCG-CAAAACACAAAAGGGAAAGGTTT
*
18323244 AAGTCGCAACGACGGACCGTGTACCTCAGAAGCATG
65 AAGTCGCAACGACGGACCGTGTACCTCAGAAACATG
* * * * * *
18323280 -AAGGGGAAGATCTAAGACCGAAATGGCAAATCCAATACCACAAAGATACAAAAGGGAAAGGTTT
1 AAAGGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAA-ACACAAAAGGGAAAGGTTT
* *
18323344 AAGTCGCAACGACGAACCCG-GTACCTTAGAAACATG
65 AAGTCGCAACGACGGA-CCGTGTACCTCAGAAACATG
18323380 AAAGG
1 AAAGG
18323385 ACAATTCCAC
Statistics
Matches: 447, Mismatches: 51, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
99 49 0.11
100 222 0.50
101 129 0.29
102 40 0.09
103 7 0.02
ACGTcount: A:0.40, C:0.21, G:0.25, T:0.14
Consensus pattern (100 bp):
AAAGGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAACACAAAAGGGAAAGGTTTA
AGTCGCAACGACGGACCGTGTACCTCAGAAACATG
Found at i:18323134 original size:201 final size:200
Alignment explanation
Indices: 18322777--18323384 Score: 799
Period size: 201 Copynumber: 3.0 Consensus size: 200
18322767 CATGAAACAC
** * *
18322777 AAAGGGAAAGATCTAAGACCGCAAAGGCAGATTTAGTACCGCAAAAACACAAAAGGGAAAGGTCT
1 AAAGGGAAAGATCTAAGACCGCAAAGGCAGATCCAGTACCGC-CAAACACAAAAGGGAAAGGTTT
* * * ** * *
18322842 ACGTCACAATGGTGGGCCGTGTACCTCAGAAACATGAAAGGGAAAGATCTAAGACCGCAATGGCA
65 AAGTCGCAACGACGGACCGTGTACCTCAGAAGCATG-AAGGGAAAGATCTAAGACCGCAATGGCA
* * * * **
18322907 GATCTAGTACCGCAAAACAC-AACAGGGAAAGGTCTAAGTCGTAACGGCGGGCCGTGTACCTCAG
129 GATCCAGTACCGCAAAAAACAAACAGGGAAAGGTTTAAGTCGCAACGGCGAACCGTGTACCTCAG
18322971 AAACATG
194 AAACATG
* * *
18322978 AAAGGGAAAGATCTAAGACCGTAACGGCAGATCCAGTACCGCCAAACACAAAAGAGAAAGGTTTA
1 AAAGGGAAAGATCTAAGACCGCAAAGGCAGATCCAGTACCGCCAAACACAAAAGGGAAAGGTTTA
* * * *
18323043 AGTCGCAACGACGGAACGTGTACCTTAGAAGCATGAAGGGAAATATCTAAGACCGCAACGGCAGA
66 AGTCGCAACGACGGACCGTGTACCTCAGAAGCATGAAGGGAAAGATCTAAGACCGCAATGGCAGA
* * *
18323108 TCCAGTACCGCAAAAAACATAACAGGGAAAGGTTTAAGTCGCAACAGCAAATCGTGTACCTCAGA
131 TCCAGTACCGCAAAAAACA-AACAGGGAAAGGTTTAAGTCGCAACGGCGAACCGTGTACCTCAGA
18323173 AACATG
195 AACATG
* * *
18323179 AAAGGGAAAGATCTAAGATCGCAATGGCAGATCCAGTACCGCCAAAACCCAAAAGGGAAAGGTTT
1 AAAGGGAAAGATCTAAGACCGCAAAGGCAGATCCAGTACCGCC-AAACACAAAAGGGAAAGGTTT
* * *
18323244 AAGTCGCAACGACGGACCGTGTACCTCAGAAGCATGAAGGGGAAGATCTAAGACCGAAATGGCAA
65 AAGTCGCAACGACGGACCGTGTACCTCAGAAGCATGAAGGGAAAGATCTAAGACCGCAATGGCAG
* * * * *
18323309 ATCCAATACCACAAAGATACAAA-AGGGAAAGGTTTAAGTCGCAACGACGAACCCG-GTACCTTA
130 ATCCAGTACCGCAAA-AAACAAACAGGGAAAGGTTTAAGTCGCAACGGCGAA-CCGTGTACCTCA
18323372 GAAACATG
193 GAAACATG
18323380 AAAGG
1 AAAGG
18323385 ACAATTCCAC
Statistics
Matches: 355, Mismatches: 47, Indels: 10
0.86 0.11 0.02
Matches are distributed among these distances:
199 44 0.12
200 46 0.13
201 167 0.47
202 94 0.26
203 4 0.01
ACGTcount: A:0.40, C:0.21, G:0.25, T:0.14
Consensus pattern (200 bp):
AAAGGGAAAGATCTAAGACCGCAAAGGCAGATCCAGTACCGCCAAACACAAAAGGGAAAGGTTTA
AGTCGCAACGACGGACCGTGTACCTCAGAAGCATGAAGGGAAAGATCTAAGACCGCAATGGCAGA
TCCAGTACCGCAAAAAACAAACAGGGAAAGGTTTAAGTCGCAACGGCGAACCGTGTACCTCAGAA
ACATG
Found at i:18323167 original size:51 final size:50
Alignment explanation
Indices: 18323096--18323253 Score: 149
Period size: 51 Copynumber: 3.1 Consensus size: 50
18323086 TATCTAAGAC
* *
18323096 CGCAACGGCAGATCCAGTACCGCAAAAAACATAACAGGGAAAGGTTTAAGT
1 CGCAACAGCAAATCCAGTACCGCAAAAAACATAA-AGGGAAAGGTTTAAGT
** * * * *
18323147 CGCAACAGCAAATCGTGTACCTC-AGAAACATGAAAGGGAAAGATCTAAGAT
1 CGCAACAGCAAATCCAGTACCGCAAAAAACAT-AAAGGGAAAGGTTTAAG-T
** * **
18323198 CGCAATGGCAGATCCAGTACCGCCAAAACCCA-AAAGGGAAAGGTTTAAGT
1 CGCAACAGCAAATCCAGTACCG-CAAAAAACATAAAGGGAAAGGTTTAAGT
18323248 CGCAAC
1 CGCAAC
18323254 GACGGACCGT
Statistics
Matches: 83, Mismatches: 20, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
50 26 0.31
51 52 0.63
52 1 0.01
53 4 0.05
ACGTcount: A:0.41, C:0.23, G:0.23, T:0.14
Consensus pattern (50 bp):
CGCAACAGCAAATCCAGTACCGCAAAAAACATAAAGGGAAAGGTTTAAGT
Found at i:18324119 original size:17 final size:17
Alignment explanation
Indices: 18324086--18324168 Score: 64
Period size: 17 Copynumber: 4.9 Consensus size: 17
18324076 CCAACTTTTA
18324086 ATTTATAAATCTT-AATTT
1 ATTT-TAAAT-TTAAATTT
*
18324104 ATTTTAAATTTAAATTC
1 ATTTTAAATTTAAATTT
18324121 A--TTAGAATTTAAATTT
1 ATTTTA-AATTTAAATTT
* *
18324137 ATATTAAATTTGAATTT
1 ATTTTAAATTTAAATTT
* * *
18324154 ACTTTGAATTAAAAT
1 ATTTTAAATTTAAAT
18324169 GATTTAAATA
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
15 3 0.06
16 13 0.25
17 30 0.57
18 7 0.13
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:18325957 original size:30 final size:30
Alignment explanation
Indices: 18325920--18326061 Score: 126
Period size: 30 Copynumber: 4.7 Consensus size: 30
18325910 CCTAAACTGT
18325920 TCAAAAATTACATTTTAACCCCAAAACTTC
1 TCAAAAATTACATTTTAACCCCAAAACTTC
* * **
18325950 TCCAAAATTATATTTTAACCTTAAAACTT-
1 TCAAAAATTACATTTTAACCCCAAAACTTC
*
18325979 TCTAAAAATTACATTTTGACCCCTAAAA-TTC
1 TC-AAAAATTACATTTTAACCCC-AAAACTTC
* * ** * *
18326010 TCTAAAATTATATTTTGGCCCTAAAACTTT
1 TCAAAAATTACATTTTAACCCCAAAACTTC
** *
18326040 TTGAAAATTACATTTTACCCCC
1 TCAAAAATTACATTTTAACCCC
18326062 TAAGTTTTCC
Statistics
Matches: 88, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
29 6 0.07
30 76 0.86
31 6 0.07
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.37
Consensus pattern (30 bp):
TCAAAAATTACATTTTAACCCCAAAACTTC
Found at i:18326011 original size:60 final size:59
Alignment explanation
Indices: 18325909--18326084 Score: 198
Period size: 60 Copynumber: 3.0 Consensus size: 59
18325899 CCCTAAAGAT
18325909 CCCT-AAACTGTTC-AAAAATTACATTTTAACCCC-AAAACTTCTCCAAAATTATATTTTAA
1 CCCTAAAACT-TTCTAAAAATTACATTTT-ACCCCTAAAA-TTCTCCAAAATTATATTTTAA
* * **
18325968 CCTTAAAACTTTCTAAAAATTACATTTTGACCCCTAAAATTCTCTAAAATTATATTTTGG
1 CCCTAAAACTTTCTAAAAATTACATTTT-ACCCCTAAAATTCTCCAAAATTATATTTTAA
* * * * *
18326028 CCCTAAAACTTTTTGAAAATTACATTTTACCCCCT-AAGTTTTCCAAAATTCTATTTT
1 CCCTAAAACTTTCTAAAAATTACATTTTA-CCCCTAAAATTCTCCAAAATTATATTTT
18326085 TGGCCCCCGA
Statistics
Matches: 101, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
59 25 0.25
60 72 0.71
61 4 0.04
ACGTcount: A:0.36, C:0.22, G:0.03, T:0.39
Consensus pattern (59 bp):
CCCTAAAACTTTCTAAAAATTACATTTTACCCCTAAAATTCTCCAAAATTATATTTTAA
Found at i:18326166 original size:30 final size:31
Alignment explanation
Indices: 18326089--18326349 Score: 125
Period size: 30 Copynumber: 8.9 Consensus size: 31
18326079 TATTTTTGGC
* * *
18326089 CCCCGATTTTACCCAAAATTACCATTTT-AC
1 CCCCAATTTTACCAAAAATTACCATTTTAAA
* *
18326119 CCCCAAACTTT--CTAAAATT-CCATTTTAAA
1 CCCC-AATTTTACCAAAAATTACCATTTTAAA
* *
18326148 CCCC-ATTTTCACCAAAAATTACCGTTTT-AT
1 CCCCAATTTT-ACCAAAAATTACCATTTTAAA
* *
18326178 CCCCAAACTTT-CC-AAAATT-CCATTTAAAA
1 CCCC-AATTTTACCAAAAATTACCATTTTAAA
*
18326207 CCCCGATTTTACCAAAAATTACCA-TTT--A
1 CCCCAATTTTACCAAAAATTACCATTTTAAA
*
18326235 CCCCTAAACTTTT--C-AAAATT-CTATTTTAAA
1 CCCC--AA-TTTTACCAAAAATTACCATTTTAAA
* * * *
18326265 CCCCGATTTCACCAAAAATTACC-GTTTAAC
1 CCCCAATTTTACCAAAAATTACCATTTTAAA
*
18326295 CCCCAAACTTT-CC-AAAATT-CCATTTTAAA
1 CCCC-AATTTTACCAAAAATTACCATTTTAAA
* ** *
18326324 -CTCGGTTTTACC-AAAATTACTATTTT
1 CCCCAATTTTACCAAAAATTACCATTTT
18326350 GCCCTCGGGT
Statistics
Matches: 173, Mismatches: 32, Indels: 53
0.67 0.12 0.21
Matches are distributed among these distances:
27 12 0.07
28 43 0.25
29 44 0.25
30 49 0.28
31 21 0.12
32 4 0.02
ACGTcount: A:0.34, C:0.29, G:0.03, T:0.34
Consensus pattern (31 bp):
CCCCAATTTTACCAAAAATTACCATTTTAAA
Found at i:18326176 original size:59 final size:59
Alignment explanation
Indices: 18326043--18326343 Score: 360
Period size: 59 Copynumber: 5.1 Consensus size: 59
18326033 AAACTTTTTG
* ** * *** *
18326043 AAAATTA-CATTTTACCCCCTAAGTTTTCCAAAATTCTATTTTTGGCCCCCGATTTTACCC
1 AAAATTACCGTTTTACCCCC-AAACTTTCCAAAATTCCA-TTTTAAACCCCGATTTTACCA
* *
18326103 AAAATTACCATTTTACCCCCAAACTTTCTAAAATTCCATTTTAAACCCC-ATTTTCACCA
1 AAAATTACCGTTTTACCCCCAAACTTTCCAAAATTCCATTTTAAACCCCGATTTT-ACCA
* *
18326162 AAAATTACCGTTTTATCCCCAAACTTTCCAAAATTCCATTTAAAACCCCGATTTTACCA
1 AAAATTACCGTTTTACCCCCAAACTTTCCAAAATTCCATTTTAAACCCCGATTTTACCA
* * * * *
18326221 AAAATTACC-ATTTACCCCTAAACTTTTCAAAATTCTATTTTAAACCCCGATTTCACCA
1 AAAATTACCGTTTTACCCCCAAACTTTCCAAAATTCCATTTTAAACCCCGATTTTACCA
* * *
18326279 AAAATTACCGTTTAACCCCCAAACTTTCCAAAATTCCATTTTAAA-CTCGGTTTTACC-
1 AAAATTACCGTTTTACCCCCAAACTTTCCAAAATTCCATTTTAAACCCCGATTTTACCA
18326336 AAAATTAC
1 AAAATTAC
18326344 TATTTTGCCC
Statistics
Matches: 210, Mismatches: 27, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
57 8 0.04
58 65 0.31
59 99 0.47
60 26 0.12
61 12 0.06
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.34
Consensus pattern (59 bp):
AAAATTACCGTTTTACCCCCAAACTTTCCAAAATTCCATTTTAAACCCCGATTTTACCA
Found at i:18326261 original size:117 final size:116
Alignment explanation
Indices: 18326089--18326348 Score: 382
Period size: 117 Copynumber: 2.2 Consensus size: 116
18326079 TATTTTTGGC
18326089 CCCCGATTTTACCCAAAATTACCATTTTACCCCCAAACTTTCTAAAATTCCATTTTAAACCCC-A
1 CCCCGATTTTA-CCAAAATTACCA-TTTACCCCCAAACTTTCTAAAATTCCATTTTAAACCCCGA
* *
18326153 TTTTCACCAAAAATTACCGTTTTATCCCCAAACTTTCCAAAATTCCATTTAAAA
64 -TTTCACCAAAAATTACCGTTTAACCCCCAAACTTTCCAAAATTCCATTTAAAA
* *
18326207 CCCCGATTTTACCAAAAATTACCATTTACCCCTAAACTTT-TCAAAATTCTATTTTAAACCCCGA
1 CCCCGATTTTACC-AAAATTACCATTTACCCCCAAACTTTCT-AAAATTCCATTTTAAACCCCGA
*
18326271 TTTCACCAAAAATTACCGTTTAACCCCCAAACTTTCCAAAATTCCATTTTAAA
64 TTTCACCAAAAATTACCGTTTAACCCCCAAACTTTCCAAAATTCCATTTAAAA
* * *
18326324 -CTCGGTTTTACCAAAATTACTATTT
1 CCCCGATTTTACCAAAATTACCATTT
18326349 TGCCCTCGGG
Statistics
Matches: 131, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
115 12 0.09
116 11 0.08
117 86 0.66
118 22 0.17
ACGTcount: A:0.35, C:0.29, G:0.03, T:0.34
Consensus pattern (116 bp):
CCCCGATTTTACCAAAATTACCATTTACCCCCAAACTTTCTAAAATTCCATTTTAAACCCCGATT
TCACCAAAAATTACCGTTTAACCCCCAAACTTTCCAAAATTCCATTTAAAA
Done.