Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 60 of 171
Found at i:23322579 original size:76 final size:76
Alignment explanation
Indices: 23322465--23322642 Score: 311
Period size: 76 Copynumber: 2.3 Consensus size: 76
23322455 GCTTCGACCC
* *
23322465 ACTTCTCTGTATCTCATCAAGAAGATAGGGGTTCGAAGTTTCACTCACTTTGAGCTTCTCTTCAT
1 ACTTCTCTGTATCTCATCAGGAAGATAAGGGTTCGAAGTTTCACTCACTTTGAGCTTCTCTTCAT
23322530 CGATTTGGTCT
66 CGATTTGGTCT
* *
23322541 ACTTCTTTGTATCTCATCAGGAAGATAAGGGTTTGAAGTTTCACTCACTTTGAGCTTCTCTTCAT
1 ACTTCTCTGTATCTCATCAGGAAGATAAGGGTTCGAAGTTTCACTCACTTTGAGCTTCTCTTCAT
23322606 CGATTTGGTCT
66 CGATTTGGTCT
*
23322617 ACTTCTCTATATCTCATCAGGAAGAT
1 ACTTCTCTGTATCTCATCAGGAAGAT
23322643 GACCGCATCA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 96 1.00
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.39
Consensus pattern (76 bp):
ACTTCTCTGTATCTCATCAGGAAGATAAGGGTTCGAAGTTTCACTCACTTTGAGCTTCTCTTCAT
CGATTTGGTCT
Found at i:23322841 original size:209 final size:206
Alignment explanation
Indices: 23322550--23323208 Score: 825
Period size: 209 Copynumber: 3.2 Consensus size: 206
23322540 TACTTCTTTG
** * * * *
23322550 TATCTCATCAGGAAGATAAGGGTTTGAAGTTTCACTCACTTTGAGCTTCTCTTCATCGATTTGGT
1 TATCTCATCAGGAAGAT-AGGGTTTGAAGTTTTGCTCGCATTGAGCTT-TTTTCATTGATTTGGT
* * *
23322615 CTACTTCTCTATATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCGCTTCTCTATATCT
64 ATACTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTATATCT
*
23322680 CATCAAGAAGACGAATTTGGTCCACTTCTATGTATCTCATCAGAAAGGCGACTGTTTTATTACTT
129 CATCAAGAAGACGAATTTGGTCCACTTCT-TGTATCTCATCAGAAAGACGACTGTTTTATTACTT
23322745 CGAGCCGCTTCTCAA
193 CGA-CCGCTTCTCAA
* * * *
23322760 TATCTTATCAAGAAGCTAGGGTTTGAAGTTTTGCTCGCATTGAGCTTTATTTCATTAATTTGGTA
1 TATCTCATCAGGAAGATAGGGTTTGAAGTTTTGCTCGCATTGAGCTTT-TTTCATTGATTTGGTA
* * * * * *
23322825 TACTTATCTGTATCTCATCAGGAAGATGACCGCATAACTTGTTTTAATCTACTTTTCTATTTCTA
65 TACTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTATATCTC
* * * * *
23322890 ATCAGGAAGACGGATTTGATCCATTTCTCTGTATCTCATCAGAAAGACGACCGTTTTATTACTTC
130 ATCAAGAAGACGAATTTGGTCCACTTCT-TGTATCTCATCAGAAAGACGACTGTTTTATTACTTC
23322955 GACCTGCTTCTCAA
194 GACC-GCTTCTCAA
* * **
23322969 TATCTCATCAGGAAGTTGGGGTTCAAAGTTTTGCTCGCATTGAGCTTTGTTTCATTGATTTGGTA
1 TATCTCATCAGGAAGATAGGGTTTGAAGTTTTGCTCGCATTGAGCTTT-TTTCATTGATTTGGTA
*
23323034 TACTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTGTATCTC
65 TACTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTATATCTC
* * * * * * *
23323099 ATCAAGAAGA-TAGATTTGGTCTACTTCTTAGTATCTCATTAGGAAGATGATTGTTTTATTGCTT
130 ATCAAGAAGACGA-ATTTGGTCCACTTCTT-GTATCTCATCAGAAAGACGACTGTTTTATTACTT
* * *
23323163 CAACCCACTTCTCAG
193 CGA-CCGCTTCTCAA
* * *
23323178 TATCTTATCAGGAAGATGGGGTTTTAAGTTT
1 TATCTCATCAGGAAGATAGGGTTTGAAGTTT
23323209 CACTTTTTTC
Statistics
Matches: 384, Mismatches: 60, Indels: 11
0.84 0.13 0.02
Matches are distributed among these distances:
208 4 0.01
209 364 0.95
210 16 0.04
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (206 bp):
TATCTCATCAGGAAGATAGGGTTTGAAGTTTTGCTCGCATTGAGCTTTTTTCATTGATTTGGTAT
ACTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTATATCTCA
TCAAGAAGACGAATTTGGTCCACTTCTTGTATCTCATCAGAAAGACGACTGTTTTATTACTTCGA
CCGCTTCTCAA
Found at i:23323389 original size:39 final size:39
Alignment explanation
Indices: 23323337--23324184 Score: 326
Period size: 39 Copynumber: 21.8 Consensus size: 39
23323327 TTGGATGGTC
* * *
23323337 GTAATCTGTCCCAAGCTCGAGGTAAAAGATTGGCTGATG
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATA
* * * * * *
23323376 GTGATCTACCCCAAGCTCGGGGTAAGAGATCGGATGGTTA
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCT-GATA
* * * *
23323416 -CAATCTGCCCTAGGCTCGAGGTAAGAGATTGGCTGTTA
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATA
* * * * * * * * **
23323454 GTGATCTACCTCAGGCTTGGGGTAAAAGATCGAATGACT-
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGA-TA
* * *
23323493 GTAATTTGCCCTAAGCTCGGGGTAAGAGATTGGCTGATA
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATA
* * * *
23323532 GTAACCTGCCCCAAACTCGAGGTAAGAGATCGAG-TGGCTA
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTG-GCT-GATA
* * ** * * ** *
23323572 -CAATTTG-TTCAGGCTCGGGGTAAGAGATTAACTGATG
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATA
* * * * * *
23323609 GTGATCTGCCCCAAGCTTGGGGTAAGAGATCGGATGGCT-
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCT-GATA
* * ** *
23323648 GTAATCTGTCTCTGGCTCGAGGTAAGAGATTGGCTGATG
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATA
* * * * * * * *
23323687 GTGATTTACCTCAAGCTCGGGGTAAGAGATCGGATGGCTA
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCT-GATA
* * * * * ** *
23323727 -CAATCTGTCCTAGGCTCAAGGTAAGAGATTGATTGATG
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATA
* ** * * * * * * *
23323765 GTGATCTATCTCAGGCTCGGGGTAAGAGATCGGATGGTT
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATA
* * * *
23323804 GCAATCTGCCCCATGCTTGGGGTAAGAGATTGGCTGAT-
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATA
* * * * *
23323842 GATGATCTGCCCCAAGCTCG-GGCTAAGAGATCGGATGGTT
1 G-TAATCTGCCCCAAGCTCGAGG-TAAGAGATTGGCTGATA
* * * * *
23323882 GTAATCTGCCTCAGGCTCGGGGTAAGAGATTGGTTGATG
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATA
* * * * * * *
23323921 GTGATTTGCCCCAAGCTAGGGGTAAGAGATCGGATAACT-
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGA-TA
* * *
23323960 GAAAT-TCGCCCCAAGCT-GAGGGTAAGAGATTGGCTAATG
1 GTAATCT-GCCCCAAGCTCGA-GGTAAGAGATTGGCTGATA
* * * * *
23323999 GTGATCTGCCCCAAGCTCAAGGTAAGAGATTAGATGGCT-
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCT-GATA
* ** * *** *
23324038 GCAATCTG-CTTAAGGCTCGGGGTGAA-AGATTAATTCATA
1 GTAATCTGCCCCAA-GCTCGAGGT-AAGAGATTGGCTGATA
* * ** *
23324077 GTGATCTGCCTCAAGCTCGAGGTAAGAGATCAGATGGAT-
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCT-GATA
* *
23324116 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTAGCTGATG
1 GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATA
* * *
23324155 GTGATCTGTCTCAAGCTCG-GCGTAAGAGAT
1 GTAATCTGCCCCAAGCTCGAG-GTAAGAGAT
23324185 CGGATGGCTG
Statistics
Matches: 588, Mismatches: 189, Indels: 64
0.70 0.22 0.08
Matches are distributed among these distances:
37 2 0.00
38 46 0.08
39 514 0.87
40 26 0.04
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (39 bp):
GTAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATA
Found at i:23323448 original size:78 final size:78
Alignment explanation
Indices: 23323351--23324223 Score: 828
Period size: 78 Copynumber: 11.2 Consensus size: 78
23323341 TCTGTCCCAA
* * * *
23323351 GCTCGAGGTAAAAGATTGGCTGATGGTGATCTACCCCAAGCTCGGGGTAAGAGATCGGATGGTTA
1 GCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTG
23323416 CAATCTGCCCTAG
66 CAATCTGCCCTAG
* * * * * * * * *
23323429 GCTCGAGGTAAGAGATTGGCTGTTAGTGATCTACCTCAGGCTTGGGGTAAAAGATCGAATGACTG
1 GCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTG
* * *
23323494 TAATTTGCCCTAA
66 CAATCTGCCCTAG
* * * * * *
23323507 GCTCGGGGTAAGAGATTGGCTGATAGTAACCTGCCCCAAACTCGAGGTAAGAGATC-GAGTGGCT
1 GCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGA-TGGCT
* * **
23323571 ACAATTTGTTC-AG
65 GCAATCTGCCCTAG
* ** *
23323584 GCTCGGGGTAAGAGATTAACTGATGGTGATCTGCCCCAAGCTTGGGGTAAGAGATCGGATGGCTG
1 GCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTG
* *
23323649 TAATCTGTCTCT-G
66 CAATCTG-CCCTAG
* * * *
23323662 GCTCGAGGTAAGAGATTGGCTGATGGTGATTTACCTCAAGCTCGGGGTAAGAGATCGGATGGCTA
1 GCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTG
*
23323727 CAATCTGTCCTAG
66 CAATCTGCCCTAG
* ** ** * * *
23323740 GCTCAAGGTAAGAGATTGATTGATGGTGATCTATCTCAGGCTCGGGGTAAGAGATCGGATGGTTG
1 GCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTG
* *
23323805 CAATCTGCCCCAT
66 CAATCTGCCCTAG
* * * * *
23323818 GCTTGGGGTAAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGCTAAGAGATCGGATGGTTG
1 GCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTG
*
23323883 TAATCTG-CCTCAG
66 CAATCTGCCCT-AG
* * * * **
23323896 GCTCGGGGTAAGAGATTGGTTGATGGTGATTTGCCCCAAGCTAGGGGTAAGAGATCGGATAACTG
1 GCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTG
* * *
23323961 AAAT-TCGCCCCAA
66 CAATCT-GCCCTAG
* ** **
23323974 GCT-GAGGGTAAGAGATTGGCTAATGGTGATCTGCCCCAAGCTCAAGGTAAGAGATTAGATGGCT
1 GCTCGA-GGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCT
*
23324038 GCAATCTG-CTTAAG
65 GCAATCTGCCCT-AG
* *** * * * * * *
23324052 GCTCGGGGTGAA-AGATTAATTCATAGTGATCTGCCTCAAGCTCGAGGTAAGAGATCAGATGGAT
1 GCTCGAGGT-AAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCT
* * *
23324116 GTAATCTGCCCCAA
65 GCAATCTGCCCTAG
* * * *
23324130 GCTCGAGGTAAGAGATTAGCTGATGGTGATCTGTCTCAAGCTCGGCGTAAGAGATCGGATGGCTG
1 GCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTG
*
23324195 CAATCTTTCCCTA-
66 CAATC-TGCCCTAG
*
23324208 GCTCGGGGTAAGAGAT
1 GCTCGAGGTAAGAGAT
23324224 CAGAATCTTC
Statistics
Matches: 644, Mismatches: 135, Indels: 32
0.79 0.17 0.04
Matches are distributed among these distances:
77 69 0.11
78 563 0.87
79 12 0.02
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (78 bp):
GCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGGCTG
CAATCTGCCCTAG
Found at i:23323516 original size:117 final size:117
Alignment explanation
Indices: 23323348--23324224 Score: 419
Period size: 117 Copynumber: 7.5 Consensus size: 117
23323338 TAATCTGTCC
* * * * * *
23323348 CAAGCTCGAGGTAAAAGATTGGCTGA-TGGTGATCTACCCCAAGCTCGGGGTAAGAGATCGGATG
1 CAAGCTCGGGGTAAGAGATCGGATGACT-GTAATCTGCCCCAAGCTCGGGGTAAGAGATCGGATG
* *
23323412 GTTACAATCTGCCCTAGGCTCGAGGTAAGAGATTGGCTGTTAGTGATCTACCT
65 GTTATAATCTGCCCTAGGCTCGAGGTAAGAGATTGGCTGATAGTGATCTACCT
* * * * * * * *
23323465 CAGGCTTGGGGTAAAAGATCGAATGACTGTAATTTGCCCTAAGCTCGGGGTAAGAGATTGGCT-G
1 CAAGCTCGGGGTAAGAGATCGGATGACTGTAATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGG
* * * ** * * ** ***
23323529 ATAGTAACCTGCCCCAAACTCGAGGTAAGAGATCGAG-TGGCTA-CAAT-TTGTT
66 TTA-TAATCTGCCCTAGGCTCGAGGTAAGAGATTG-GCT-GATAGTGATCTACCT
* ** * *
23323581 CAGGCTCGGGGTAAGAGAT-TAACTGA-TGGTGATCTGCCCCAAGCTTGGGGTAAGAGATCGGAT
1 CAAGCTCGGGGTAAGAGATCGGA-TGACT-GTAATCTGCCCCAAGCTCGGGGTAAGAGATCGGAT
* * * * *
23323644 GGCTGTAATCTGTCTCT-GGCTCGAGGTAAGAGATTGGCTGATGGTGATTTACCT
64 GGTTATAATCTG-CCCTAGGCTCGAGGTAAGAGATTGGCTGATAGTGATCTACCT
* ** * * * ** *
23323698 CAAGCTCGGGGTAAGAGATCGGATGGCTACAATCTGTCCTAGGCTCAAGGTAAGAGATTGATTGA
1 CAAGCTCGGGGTAAGAGATCGGATGACTGTAATCTGCCCCAAGCTCGGGGTAAGAGATCG---GA
* * * * * * * ** * *
23323763 TGGTGATCTATCT---C-AGGCTCGGGGTAAGAGATCGGATGGTTGCAATCTGCCC
63 TGGTTAT-AATCTGCCCTAGGCTCGAGGTAAGAGATTGGCTGATAGTGATCTACCT
* * * * * *
23323815 CATGCTTGGGGTAAGAGATTGGCTGA-TGATGATCTGCCCCAAGCTCGGGCTAAGAGATCGGATG
1 CAAGCTCGGGGTAAGAGATCGGATGACTG-TAATCTGCCCCAAGCTCGGGGTAAGAGATCGGATG
* * * * * * *
23323879 GTTGTAATCTG-CCTCAGGCTCGGGGTAAGAGATTGGTTGATGGTGATTTGCCC
65 GTTATAATCTGCCCT-AGGCTCGAGGTAAGAGATTGGCTGATAGTGATCTACCT
* * * * *
23323932 CAAGCTAGGGGTAAGAGATCGGATAACTGAAAT-TCGCCCCAAGCT-GAGGGTAAGAGATTGGCT
1 CAAGCTCGGGGTAAGAGATCGGATGACTGTAATCT-GCCCCAAGCTCG-GGGTAAGAGATCGGAT
** ** * * * * * * * ** *
23323995 AATGGTGATCTGCCCCAAGCTCAAGGTAAGAGATTAGATGGCT-GCAATCT-GCT
64 GGTTATAATCTGCCCTAGGCTCGAGGTAAGAGATTGGCT-GATAGTGATCTACCT
* ** * * * * *
23324048 TAAGGCTCGGGGTGAA-AGAT-TAAT-TCATAGTGATCTGCCTCAAGCTCGAGGTAAGAGATCAG
1 CAA-GCTCGGGGT-AAGAGATCGGATGAC-T-GTAATCTGCCCCAAGCTCGGGGTAAGAGATCGG
* * * * * * **
23324110 ATGGATGTAATCTGCCCCAAGCTCGAGGTAAGAGATTAGCTGATGGTGATCTGTCT
62 ATGGTTATAATCTGCCCTAGGCTCGAGGTAAGAGATTGGCTGATAGTGATCTACCT
* * * ** *
23324166 CAAGCTCGGCGTAAGAGATCGGATGGCTGCAATCTTTCCCTAGCTCGGGGTAAGAGATC
1 CAAGCTCGGGGTAAGAGATCGGATGACTGTAATCTGCCCCAAGCTCGGGGTAAGAGATC
23324225 AGAATCTTCA
Statistics
Matches: 558, Mismatches: 163, Indels: 78
0.70 0.20 0.10
Matches are distributed among these distances:
113 4 0.01
114 7 0.01
115 8 0.01
116 92 0.16
117 412 0.74
118 24 0.04
119 1 0.00
120 6 0.01
121 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (117 bp):
CAAGCTCGGGGTAAGAGATCGGATGACTGTAATCTGCCCCAAGCTCGGGGTAAGAGATCGGATGG
TTATAATCTGCCCTAGGCTCGAGGTAAGAGATTGGCTGATAGTGATCTACCT
Found at i:23323810 original size:156 final size:156
Alignment explanation
Indices: 23323329--23324223 Score: 921
Period size: 156 Copynumber: 5.7 Consensus size: 156
23323319 GTAAGGAATT
* * * *
23323329 GGATGG-TCGTAATCTGTCCCAAGCTCGAGGTAAAAGATTGGCTGATGGTGATCTACCCCAAGCT
1 GGATGGCT-GTAATCTGCCCCTAGCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCT
* * * ** * *
23323393 CGGGGTAAGAGATCGGATGGTTACAATCTGCCCTAGGCTCGAGGTAAGAGATTGGCTGTTAGTGA
65 CGGGGTAAGAGATCGGATGGCTACAATCTGTCCTAGGCTCGGGGTAAGAGATTGATTGATGGTGA
* * * *
23323458 TCTACCTCAGGCTTGGGGTAAAAGATC
130 TCTGCCTCAAGCTCGGGGTAAGAGATC
* * * * * * * *
23323485 GAATGACTGTAATTTG-CCCTAAGCTCGGGGTAAGAGATTGGCTGATAGTAACCTGCCCCAAACT
1 GGATGGCTGTAATCTGCCCCT-AGCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCT
* * * * *
23323549 CGAGGTAAGAGATC-GAGTGGCTACAATTTGTTC-AGGCTCGGGGTAAGAGATTAACTGATGGTG
65 CGGGGTAAGAGATCGGA-TGGCTACAATCTGTCCTAGGCTCGGGGTAAGAGATTGATTGATGGTG
* *
23323612 ATCTGCCCCAAGCTTGGGGTAAGAGATC
129 ATCTGCCTCAAGCTCGGGGTAAGAGATC
* * * * * *
23323640 GGATGGCTGTAATCTGTCTCTGGCTCGAGGTAAGAGATTGGCTGATGGTGATTTACCTCAAGCTC
1 GGATGGCTGTAATCTGCCCCTAGCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTC
**
23323705 GGGGTAAGAGATCGGATGGCTACAATCTGTCCTAGGCTCAAGGTAAGAGATTGATTGATGGTGAT
66 GGGGTAAGAGATCGGATGGCTACAATCTGTCCTAGGCTCGGGGTAAGAGATTGATTGATGGTGAT
** *
23323770 CTATCTCAGGCTCGGGGTAAGAGATC
131 CTGCCTCAAGCTCGGGGTAAGAGATC
* * * * *
23323796 GGATGGTTGCAATCTGCCCC-ATGCTTGGGGTAAGAGATTGGCTGATGATGATCTGCCCCAAGCT
1 GGATGGCTGTAATCTGCCCCTA-GCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCT
* * ** *
23323860 CGGGCTAAGAGATCGGATGGTTGTAATCTG-CCTCAGGCTCGGGGTAAGAGATTGGTTGATGGTG
65 CGGGGTAAGAGATCGGATGGCTACAATCTGTCCT-AGGCTCGGGGTAAGAGATTGATTGATGGTG
* * *
23323924 ATTTGCCCCAAGCTAGGGGTAAGAGATC
129 ATCTGCCTCAAGCTCGGGGTAAGAGATC
** * * *
23323952 GGATAACTGAAAT-TCGCCCCAAGCT-GAGGGTAAGAGATTGGCTAATGGTGATCTGCCCCAAGC
1 GGATGGCTGTAATCT-GCCCCTAGCTCGA-GGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGC
** ** * * * * *
23324015 TCAAGGTAAGAGATTAGATGGCTGCAATCTG-CTTAAGGCTCGGGGTGAA-AGATTAATTCATAG
64 TCGGGGTAAGAGATCGGATGGCTACAATCTGTCCT-AGGCTCGGGGT-AAGAGATTGATTGATGG
*
23324078 TGATCTGCCTCAAGCTCGAGGTAAGAGATC
127 TGATCTGCCTCAAGCTCGGGGTAAGAGATC
* * * * * *
23324108 AGATGGATGTAATCTGCCCCAAGCTCGAGGTAAGAGATTAGCTGATGGTGATCTGTCTCAAGCTC
1 GGATGGCTGTAATCTGCCCCTAGCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTC
* * *
23324173 GGCGTAAGAGATCGGATGGCTGCAATCTTTCCCTA-GCTCGGGGTAAGAGAT
66 GGGGTAAGAGATCGGATGGCTACAATCTGT-CCTAGGCTCGGGGTAAGAGAT
23324224 CAGAATCTTC
Statistics
Matches: 608, Mismatches: 114, Indels: 34
0.80 0.15 0.04
Matches are distributed among these distances:
155 135 0.22
156 463 0.76
157 8 0.01
158 2 0.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (156 bp):
GGATGGCTGTAATCTGCCCCTAGCTCGAGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTC
GGGGTAAGAGATCGGATGGCTACAATCTGTCCTAGGCTCGGGGTAAGAGATTGATTGATGGTGAT
CTGCCTCAAGCTCGGGGTAAGAGATC
Found at i:23324604 original size:98 final size:98
Alignment explanation
Indices: 23324497--23324684 Score: 225
Period size: 98 Copynumber: 1.9 Consensus size: 98
23324487 CCCGTCATGT
* * *
23324497 TTTTAAAGTACCAGGTTCATCGTTGCGGCCTCAACCTTTCCCTTCATAT-ATCAGGGTACTGGAT
1 TTTTAAAGTACCAGGTTCACCGTTGCGGCCTCAACATTTCCCTTCAAATCATCAGGGTACTGGAT
23324561 TCGCCGTTGCAGCCTCAATCCTTTCCAACACATC
66 TCGCCGTTGCAGCCTCAA-CCTTTCCAACACATC
* ** * * * * * *
23324595 TTTTGAAGTACTGGGTTCGCCGTTGCTGCCTCAACATTTCCTTTCAAATCTTCATGGTACTGGGT
1 TTTTAAAGTACCAGGTTCACCGTTGCGGCCTCAACATTTCCCTTCAAATCATCAGGGTACTGGAT
* **
23324660 TCGCTGTTGTGGCCTCAACCTTTCC
66 TCGCCGTTGCAGCCTCAACCTTTCC
23324685 CTTCAAATCT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
98 47 0.64
99 27 0.36
ACGTcount: A:0.18, C:0.29, G:0.19, T:0.35
Consensus pattern (98 bp):
TTTTAAAGTACCAGGTTCACCGTTGCGGCCTCAACATTTCCCTTCAAATCATCAGGGTACTGGAT
TCGCCGTTGCAGCCTCAACCTTTCCAACACATC
Found at i:23324659 original size:49 final size:49
Alignment explanation
Indices: 23324517--23324852 Score: 238
Period size: 50 Copynumber: 6.8 Consensus size: 49
23324507 CCAGGTTCAT
* * * * *
23324517 CGTTGCGGCCTCAACCTTTCCCTTCATAT-ATCAGGGTACTGGATTCGC
1 CGTTGCTGCCTCAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTCGC
* ** * *
23324565 CGTTGCAGCCTCAATCCTTT-CCAACACATCTT-TTGAAGTACTGGGTTCGC
1 CGTTGCTGCCTCAA-CCTTTCCCTTCAAATCTTCATG--GTACTGGGTTCGC
* *
23324615 CGTTGCTGCCTCAACATTTCCTTTCAAATCTTCATGGTACTGGGTTCGC
1 CGTTGCTGCCTCAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTCGC
* ** **
23324664 TGTTG-TGGCCTCAACCTTTCCCTTCAAATCTTCATGGTACAAGGTTTAC
1 CGTTGCT-GCCTCAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTCGC
* * * * * *
23324713 TGTTAC-GACCTCAACCTTTCCCATCACATCTTC-TCAGGTACCGGGTTTGC
1 CGTTGCTG-CCTCAACCTTTCCCTTCAAATCTTCAT--GGTACTGGGTTCGC
* * * * *
23324763 CATTG-TGGCCTCAACCTTTCCCATCACATCTTC-TGAGGTACCGGGTTTGC
1 CGTTGCT-GCCTCAACCTTTCCCTTCAAATCTTCAT--GGTACTGGGTTCGC
* * * *
23324813 CATTACGGCCTCAACATTTCCCTTCAAATCTTCATGGTAC
1 CGTTGCTGCCTCAACCTTTCCCTTCAAATCTTCATGGTAC
23324853 CGTGACTCAT
Statistics
Matches: 236, Mismatches: 37, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
48 23 0.10
49 95 0.40
50 114 0.48
51 4 0.02
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.33
Consensus pattern (49 bp):
CGTTGCTGCCTCAACCTTTCCCTTCAAATCTTCATGGTACTGGGTTCGC
Found at i:23324852 original size:99 final size:99
Alignment explanation
Indices: 23324517--23324854 Score: 317
Period size: 99 Copynumber: 3.4 Consensus size: 99
23324507 CCAGGTTCAT
* * * * * * * **
23324517 CGTTGCGGCCTCAACCTTTCCCTTCATAT-ATCAGGGTACTGGATTCGCCGTTGCAGCCTCAATC
1 CGTTACGGCCTCAACATTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGTGGCCTCAA-C
* * * * *
23324581 CTTT-CCAACACATCTTTTGAAGTACTGGGTTCGC
65 CTTTCCCATCACATCTTCTGAGGTACAGGGTTTGC
* * * * *
23324615 CGTTGCTGCCTCAACATTTCCTTTCAAATCTTCATGGTACTGGGTTCGCTGTTGTGGCCTCAACC
1 CGTTACGGCCTCAACATTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGTGGCCTCAACC
* * * *
23324680 TTTCCCTTCAAATCTTC--ATGGTACAAGGTTTAC
66 TTTCCCATCACATCTTCTGA-GGTACAGGGTTTGC
* * * * * * *
23324713 TGTTACGACCTCAACCTTTCCCATCACATCTTC-TCAGGTACCGGGTTTGCCATTGTGGCCTCAA
1 CGTTACGGCCTCAACATTTCCCTTCAAATCTTCAT--GGTACCGGGTTCGCCGTTGTGGCCTCAA
*
23324777 CCTTTCCCATCACATCTTCTGAGGTACCGGGTTTGC
64 CCTTTCCCATCACATCTTCTGAGGTACAGGGTTTGC
*
23324813 CATTACGGCCTCAACATTTCCCTTCAAATCTTCATGGTACCG
1 CGTTACGGCCTCAACATTTCCCTTCAAATCTTCATGGTACCG
23324855 TGACTCATCT
Statistics
Matches: 190, Mismatches: 42, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
97 2 0.01
98 64 0.34
99 84 0.44
100 38 0.20
101 2 0.01
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.33
Consensus pattern (99 bp):
CGTTACGGCCTCAACATTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGTGGCCTCAACC
TTTCCCATCACATCTTCTGAGGTACAGGGTTTGC
Found at i:23325771 original size:6 final size:6
Alignment explanation
Indices: 23325762--23325846 Score: 52
Period size: 6 Copynumber: 13.7 Consensus size: 6
23325752 TGACCTCTCA
* * *
23325762 TTTTCT TTTTCT TTTTTT TTTTCT CTTTT-T GTTT-T TCTTCTT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT -TTTTCT TTTTCT TTTTC-T TTTTCT
23325810 TTATT-T ATTTTGCT TTTTCT TCTTT-T TCTTTCT TTTT
1 TT-TTCT -TTTT-CT TTTTCT T-TTTCT T-TTTCT TTTT
23325847 TTTCTTCATT
Statistics
Matches: 64, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
5 6 0.09
6 35 0.55
7 22 0.34
8 1 0.02
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTCT
Found at i:23325788 original size:14 final size:14
Alignment explanation
Indices: 23325762--23325807 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
23325752 TGACCTCTCA
*
23325762 TTTTCTTTT-TCTT
1 TTTTTTTTTCTCTT
23325775 TTTTTTTTTCTCTT
1 TTTTTTTTTCTCTT
*
23325789 TTTGTTTTTCTTCTT
1 TTTTTTTTTC-TCTT
23325804 TTTT
1 TTTT
23325808 CTTTATTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 8 0.29
14 13 0.46
15 7 0.25
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (14 bp):
TTTTTTTTTCTCTT
Found at i:23325791 original size:15 final size:15
Alignment explanation
Indices: 23325773--23325851 Score: 52
Period size: 17 Copynumber: 4.9 Consensus size: 15
23325763 TTTCTTTTTC
23325773 TTTTTTTTTTTCTCT
1 TTTTTTTTTTTCTCT
*
23325788 TTTTGTTTTTCTTCTTT
1 TTTT-TTTTT-TTCTCT
*
23325805 TTTCTTTATTTATTTTGCT
1 TTT-TTT-TTT-TTCT-CT
*
23325824 TTTTCTTCTTTT-TCT
1 TTTT-TTTTTTTCTCT
*
23325839 TTCTTTTTTTTCT
1 TTTTTTTTTTTCT
23325852 TCATTGAATC
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
14 6 0.12
15 10 0.20
16 6 0.12
17 12 0.24
18 10 0.20
19 6 0.12
ACGTcount: A:0.03, C:0.14, G:0.03, T:0.81
Consensus pattern (15 bp):
TTTTTTTTTTTCTCT
Found at i:23325805 original size:9 final size:9
Alignment explanation
Indices: 23325764--23325852 Score: 65
Period size: 9 Copynumber: 9.6 Consensus size: 9
23325754 ACCTCTCATT
23325764 TTCTTTTTC
1 TTCTTTTTC
* *
23325773 TTTTTTTTT
1 TTCTTTTTC
*
23325782 TTCTCTTT-
1 TTCTTTTTC
*
23325790 TTGTTTTTC
1 TTCTTTTTC
23325799 TTCTTTTTTC
1 TTC-TTTTTC
*
23325809 TT-TATTTATT
1 TTCT-TTT-TC
23325819 TTGCTTTTTC
1 TT-CTTTTTC
23325829 TTCTTTTTC
1 TTCTTTTTC
*
23325838 TTTCTTTTTT
1 -TTCTTTTTC
23325848 TTCTT
1 TTCTT
23325853 CATTGAATCC
Statistics
Matches: 63, Mismatches: 10, Indels: 14
0.72 0.11 0.16
Matches are distributed among these distances:
8 7 0.11
9 30 0.48
10 22 0.35
11 3 0.05
12 1 0.02
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.81
Consensus pattern (9 bp):
TTCTTTTTC
Found at i:23325820 original size:24 final size:22
Alignment explanation
Indices: 23325776--23325852 Score: 70
Period size: 24 Copynumber: 3.5 Consensus size: 22
23325766 CTTTTTCTTT
* *
23325776 TTTTTTTTCTCTTTTTGTTTTTC
1 TTTTTTTTCT-TTTTTATTTTGC
23325799 TTCTTTTTTCTTTATTTATTTTGC
1 TT-TTTTTTCTTT-TTTATTTTGC
* *
23325823 TTTTTCTTC-TTTTT-CTTT-C
1 TTTTTTTTCTTTTTTATTTTGC
23325842 TTTTTTTTCTT
1 TTTTTTTTCTT
23325853 CATTGAATCC
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
19 9 0.20
20 4 0.09
21 3 0.07
22 2 0.04
23 10 0.22
24 18 0.39
ACGTcount: A:0.03, C:0.14, G:0.03, T:0.81
Consensus pattern (22 bp):
TTTTTTTTCTTTTTTATTTTGC
Found at i:23325820 original size:29 final size:29
Alignment explanation
Indices: 23325761--23325849 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
23325751 TTGACCTCTC
* *
23325761 ATTTTCTTTTTCTT-TTTTTT-TTTCTCT
1 ATTTTGTTTTTCTTCTTTTTTCTTTCTTT
*
23325788 -TTTTGTTTTTCTTCTTTTTTCTTTATTT
1 ATTTTGTTTTTCTTCTTTTTTCTTTCTTT
23325816 ATTTTGCTTTTTCTTC-TTTTTCTTTCTTT
1 ATTTTG-TTTTTCTTCTTTTTTCTTTCTTT
*
23325845 TTTTT
1 ATTTT
23325850 CTTCATTGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
26 12 0.23
27 6 0.11
28 5 0.09
29 21 0.40
30 9 0.17
ACGTcount: A:0.03, C:0.13, G:0.02, T:0.81
Consensus pattern (29 bp):
ATTTTGTTTTTCTTCTTTTTTCTTTCTTT
Found at i:23325826 original size:36 final size:36
Alignment explanation
Indices: 23325762--23325849 Score: 94
Period size: 36 Copynumber: 2.5 Consensus size: 36
23325752 TGACCTCTCA
* * *
23325762 TTTTC-TTTTTCTTTTTTTTTTTCTCTTTTTGTT-T
1 TTTTCTTTTTTCTTTTTTATTTTCGCTTTTTCTTCT
23325796 TTCTTCTTTTTTCTTTATTTATTTT-GCTTTTTCTTCT
1 TT-TTCTTTTTTCTTT-TTTATTTTCGCTTTTTCTTCT
*
23325833 TTTTCTTTCTT-TTTTTT
1 TTTTCTTTTTTCTTTTTT
23325850 CTTCATTGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
34 5 0.11
35 6 0.13
36 25 0.54
37 10 0.22
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (36 bp):
TTTTCTTTTTTCTTTTTTATTTTCGCTTTTTCTTCT
Found at i:23326730 original size:13 final size:14
Alignment explanation
Indices: 23326709--23326748 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
23326699 CGTCTTGACT
23326709 TTTTCTTTCTTTT-C
1 TTTT-TTTCTTTTCC
23326723 TTTTTTTCTTTTCC
1 TTTTTTTCTTTTCC
*
23326737 TTTTTCTCTTTT
1 TTTTTTTCTTTT
23326749 TTATTGGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTTTCTTTTCC
Found at i:23326746 original size:22 final size:23
Alignment explanation
Indices: 23326707--23326750 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
23326697 TTCGTCTTGA
* *
23326707 CTTTTTCTTTCTTTTCTTTTTTT
1 CTTTTCCTTTCTTCTCTTTTTTT
23326730 CTTTTCCTTT-TTCTCTTTTTT
1 CTTTTCCTTTCTTCTCTTTTTT
23326751 ATTGGGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (23 bp):
CTTTTCCTTTCTTCTCTTTTTTT
Found at i:23331697 original size:30 final size:30
Alignment explanation
Indices: 23331631--23331709 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 30
23331621 GTCAAATTGA
23331631 AATTTTTGGAAAATTTG-GGATTAAAATCC
1 AATTTTTGGAAAATTTGAGGATTAAAATCC
* **
23331660 AACTTTTGGAAAATTTGAGG-TTGAAAATGT
1 AATTTTTGGAAAATTTGAGGATT-AAAATCC
*
23331690 GATTTTTGG-AAATTTAGAGG
1 AATTTTTGGAAAATTT-GAGG
23331710 CAAAAGGGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
29 24 0.57
30 18 0.43
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (30 bp):
AATTTTTGGAAAATTTGAGGATTAAAATCC
Found at i:23331751 original size:30 final size:28
Alignment explanation
Indices: 23331634--23331754 Score: 95
Period size: 30 Copynumber: 4.1 Consensus size: 28
23331624 AAATTGAAAT
**
23331634 TTTTGGAAAATTTG-GGATTAAAATCCAA
1 TTTTGGAAAATTTGAGG-TTAAAATGTAA
*
23331662 CTTTTGGAAAATTTGAGGTTGAAAATGTGAT
1 -TTTTGGAAAATTTGAGGTT-AAAATGT-AA
* *
23331693 TTTTGG-AAATTTAGAGG-CAAAAGGGTAA
1 TTTTGGAAAATTT-GAGGTTAAAA-TGTAA
*
23331721 TTTTGGAAAAATTTTGGGGTTAAAATGTAA
1 TTTTGG-AAAA-TTTGAGGTTAAAATGTAA
23331751 TTTT
1 TTTT
23331755 TATGAAGTTC
Statistics
Matches: 74, Mismatches: 9, Indels: 17
0.74 0.09 0.17
Matches are distributed among these distances:
28 11 0.15
29 24 0.32
30 31 0.42
31 8 0.11
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (28 bp):
TTTTGGAAAATTTGAGGTTAAAATGTAA
Found at i:23348207 original size:24 final size:23
Alignment explanation
Indices: 23348180--23348239 Score: 93
Period size: 24 Copynumber: 2.6 Consensus size: 23
23348170 AATCTTTCAG
23348180 TTAAACTCTATTTATTTGCTTTAA
1 TTAAACTCTATTTATTTG-TTTAA
*
23348204 TTAAACTCTGTTTATTTGTTTAA
1 TTAAACTCTATTTATTTGTTTAA
*
23348227 ATAAACTCTATTT
1 TTAAACTCTATTT
23348240 TTTTCTGTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 16 0.48
24 17 0.52
ACGTcount: A:0.30, C:0.12, G:0.05, T:0.53
Consensus pattern (23 bp):
TTAAACTCTATTTATTTGTTTAA
Found at i:23348231 original size:23 final size:24
Alignment explanation
Indices: 23348181--23348239 Score: 93
Period size: 23 Copynumber: 2.5 Consensus size: 24
23348171 ATCTTTCAGT
*
23348181 TAAACTCTATTTATTTGCTTTAAT
1 TAAACTCTATTTATTTGCTTTAAA
*
23348205 TAAACTCTGTTTATTTG-TTTAAA
1 TAAACTCTATTTATTTGCTTTAAA
23348228 TAAACTCTATTT
1 TAAACTCTATTT
23348240 TTTTCTGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 16 0.50
24 16 0.50
ACGTcount: A:0.31, C:0.12, G:0.05, T:0.53
Consensus pattern (24 bp):
TAAACTCTATTTATTTGCTTTAAA
Found at i:23351694 original size:13 final size:13
Alignment explanation
Indices: 23351676--23351709 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
23351666 CCTCCTTAGG
*
23351676 GAAATTTCGTTCT
1 GAAATTTCGTTCC
23351689 GAAATTTCGTTCC
1 GAAATTTCGTTCC
23351702 GAAATTTC
1 GAAATTTC
23351710 TTACCAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (13 bp):
GAAATTTCGTTCC
Found at i:23357733 original size:30 final size:31
Alignment explanation
Indices: 23357693--23357766 Score: 93
Period size: 30 Copynumber: 2.5 Consensus size: 31
23357683 AGACAACCTA
* *
23357693 ATTT-TTTATTTTAT-TTTTTCTTTTTACTT
1 ATTTATTTATTTTATATTTATCTTTCTACTT
23357722 -TTATATTTA-TTTATATTTATCTTTCTACTT
1 ATT-TATTTATTTTATATTTATCTTTCTACTT
23357752 ATTTATTTATTTTAT
1 ATTTATTTATTTTAT
23357767 GTCCAGAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
28 2 0.05
29 6 0.16
30 23 0.61
31 7 0.18
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (31 bp):
ATTTATTTATTTTATATTTATCTTTCTACTT
Found at i:23365957 original size:14 final size:15
Alignment explanation
Indices: 23365929--23365958 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
23365919 TACTAACTTA
23365929 TTAAAAATCATTTTT
1 TTAAAAATCATTTTT
23365944 TTAAAAATCATTTTT
1 TTAAAAATCATTTTT
23365959 CAAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (15 bp):
TTAAAAATCATTTTT
Found at i:23365963 original size:14 final size:15
Alignment explanation
Indices: 23365931--23365964 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
23365921 CTAACTTATT
*
23365931 AAAAATCATTTTTTT
1 AAAAATCATTTTTTC
23365946 AAAAATCA-TTTTTC
1 AAAAATCATTTTTTC
23365960 AAAAA
1 AAAAA
23365965 ATAAGGCTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAAATCATTTTTTC
Found at i:23365964 original size:15 final size:15
Alignment explanation
Indices: 23365931--23365966 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
23365921 CTAACTTATT
**
23365931 AAAAATCATTTTTTT
1 AAAAATCATTTTTCA
23365946 AAAAATCATTTTTCA
1 AAAAATCATTTTTCA
23365961 AAAAAT
1 AAAAAT
23365967 AAGGCTAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (15 bp):
AAAAATCATTTTTCA
Found at i:23366608 original size:30 final size:30
Alignment explanation
Indices: 23366574--23366874 Score: 123
Period size: 30 Copynumber: 10.1 Consensus size: 30
23366564 AAAATTCAGA
* *
23366574 TTTAACCCCCAAACTTTGTAGAAATTATAT
1 TTTAACCCCCAAACTTTCTAAAAATTATAT
* * *
23366604 TTTAATCTCCAAATTTTCTAAAAATTATAT
1 TTTAACCCCCAAACTTTCTAAAAATTATAT
*** * * *
23366634 TTTAACCTTTAAACTTTCCAAAAAATACAT
1 TTTAACCCCCAAACTTTCTAAAAATTATAT
* ** * * *
23366664 TTTGACCCTTAAATTTTC-CAAAATTACAT
1 TTTAACCCCCAAACTTTCTAAAAATTATAT
* * * *
23366693 TTTGATCCCTAAACTTT-TCCAAAATTATAT
1 TTTAACCCCCAAACTTTCT-AAAAATTATAT
* **
23366723 TTTAACCCTCAAACTTTTCT-AAAATTGCAT
1 TTTAACCCCCAAAC-TTTCTAAAAATTATAT
* * * * * *
23366753 TTTGACCTCTAAAATTT-TCCAAAATTACAT
1 TTTAACCCCCAAACTTTCT-AAAAATTATAT
** * **
23366783 TTTAACAGCCAAACTTT-TCCAAAATTACGT
1 TTTAACCCCCAAACTTTCT-AAAAATTATAT
* * *
23366813 TTTAACCCCTAAACTTT-TCCAAAATTACA-
1 TTTAACCCCCAAACTTTCT-AAAAATTATAT
* * *
23366842 TTTGACCCCCAAATTTTC-ATAAAATTAAAT
1 TTTAACCCCCAAACTTTCTA-AAAATTATAT
23366872 TTT
1 TTT
23366875 TCCCTAAAAT
Statistics
Matches: 214, Mismatches: 48, Indels: 18
0.76 0.17 0.06
Matches are distributed among these distances:
28 1 0.00
29 48 0.22
30 161 0.75
31 3 0.01
32 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.03, T:0.40
Consensus pattern (30 bp):
TTTAACCCCCAAACTTTCTAAAAATTATAT
Found at i:23366666 original size:60 final size:58
Alignment explanation
Indices: 23366595--23366874 Score: 267
Period size: 60 Copynumber: 4.7 Consensus size: 58
23366585 AACTTTGTAG
* * * *
23366595 AAATTATATTTTAATCTCCAAATTTTCTAAAAATTATATTTTAACCTTTAAAC-TTTCCAA
1 AAATTACATTTTAA-CCCCAAATTTTC-AAAAATTACATTTTAACCTCTAAACTTTTCC-A
* * * * *
23366655 AAAATACATTTTGACCCTTAAATTTTCCAAAATTACATTTTGATCC-CTAAACTTTTCCA
1 AAATTACATTTTAACCC-CAAATTTTCAAAAATTACATTTT-AACCTCTAAACTTTTCCA
* * * * *
23366714 AAATTATATTTTAACCCTCAAACTTTTCTAAAATTGCATTTTGACCTCTAAAATTTTCCA
1 AAATTACATTTTAACCC-CAAA-TTTTCAAAAATTACATTTTAACCTCTAAACTTTTCCA
* * * *
23366774 AAATTACATTTTAACAGCCAAACTTTTCCAAAATTACGTTTTAACCCCTAAACTTTTCCA
1 AAATTACATTTTAAC-CCCAAA-TTTTCAAAAATTACATTTTAACCTCTAAACTTTTCCA
* * *
23366834 AAATTACATTTGACCCCCAAATTTTCATAAAATTAAATTTT
1 AAATTACATTTTAACCCCAAATTTTCA-AAAATTACATTTT
23366875 TCCCTAAAAT
Statistics
Matches: 181, Mismatches: 32, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
58 5 0.03
59 56 0.31
60 119 0.66
61 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.40
Consensus pattern (58 bp):
AAATTACATTTTAACCCCAAATTTTCAAAAATTACATTTTAACCTCTAAACTTTTCCA
Found at i:23366711 original size:90 final size:87
Alignment explanation
Indices: 23366595--23366874 Score: 296
Period size: 90 Copynumber: 3.1 Consensus size: 87
23366585 AACTTTGTAG
* * * * *
23366595 AAATTATATTTTAATCTCCAAA-TTTTCTAAAAATTATATTTTAACCTTTAAACTTTCCAAAAAA
1 AAATTACATTTT-ATCACCAAACTTTTC-CAAAATTATATTTTAACCCTTAAACTTTCC-AAAAT
*
23366659 TACATTTTGACCCTTAAATTTTCCA
63 TACATTTTGACCCTAAAATTTTCCA
* *
23366684 AAATTACATTTTGATC-CCTAAACTTTTCCAAAATTATATTTTAACCCTCAAACTTTTCTAAAAT
1 AAATTACATTTT-ATCACC-AAACTTTTCCAAAATTATATTTTAACCCTTAAAC-TTTCCAAAAT
*
23366748 TGCATTTTGACCTCTAAAATTTTCCA
63 TACATTTTGACC-CTAAAATTTTCCA
* ** *
23366774 AAATTACATTTTAACAGCCAAACTTTTCCAAAATTACGTTTTAACCCCTAAACTTTTCCAAAATT
1 AAATTACATTTTATCA-CCAAACTTTTCCAAAATTATATTTTAACCCTTAAAC-TTTCCAAAATT
** *
23366839 ACA-TTTGACCCCCAAATTTTCATA
64 ACATTTTGACCCTAAAATTTTC-CA
*
23366863 AAATTAAATTTT
1 AAATTACATTTT
23366875 TCCCTAAAAT
Statistics
Matches: 164, Mismatches: 20, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
88 11 0.07
89 75 0.46
90 76 0.46
91 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.40
Consensus pattern (87 bp):
AAATTACATTTTATCACCAAACTTTTCCAAAATTATATTTTAACCCTTAAACTTTCCAAAATTAC
ATTTTGACCCTAAAATTTTCCA
Found at i:23368768 original size:28 final size:29
Alignment explanation
Indices: 23368700--23368774 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 29
23368690 AATTAATTAA
23368700 TTTTTAAA-AATTTTAA-AATATTATCAT
1 TTTTTAAATAATTTTAATAATATTATCAT
* *
23368727 TTTTT-AATTATTTTAATAA-ATT-TTAT
1 TTTTTAAATAATTTTAATAATATTATCAT
*
23368753 TTTTTAAAATAATTTTTATAAT
1 TTTTT-AAATAATTTTAATAAT
23368775 TCTTTTAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
26 10 0.26
27 15 0.38
28 14 0.36
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTTTAAATAATTTTAATAATATTATCAT
Found at i:23368803 original size:19 final size:19
Alignment explanation
Indices: 23368754--23368804 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
23368744 AAATTTTATT
*
23368754 TTTTAAAATAATTTTTATAA
1 TTTTAAAA-AATTTTTAAAA
**
23368774 TTCTT-TTAAATTTTTAAAA
1 TT-TTAAAAAATTTTTAAAA
23368793 TTTTAAAAAATT
1 TTTTAAAAAATT
23368805 AATTGCTCAT
Statistics
Matches: 24, Mismatches: 5, Indels: 5
0.71 0.15 0.15
Matches are distributed among these distances:
18 2 0.08
19 17 0.71
20 3 0.12
21 2 0.08
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTAAAAAATTTTTAAAA
Found at i:23374642 original size:22 final size:20
Alignment explanation
Indices: 23374617--23374656 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23374607 AATTTTTTTT
23374617 TTTTAAAGATGTATACCAAAAA
1 TTTTAAAG--GTATACCAAAAA
*
23374639 TTTTGAAGGTATACCAAA
1 TTTTAAAGGTATACCAAA
23374657 TATTATGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
22 7 0.41
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (20 bp):
TTTTAAAGGTATACCAAAAA
Found at i:23374694 original size:19 final size:20
Alignment explanation
Indices: 23374650--23374701 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
23374640 TTTGAAGGTA
* * *
23374650 TACCAAATATTATGAGAGAT
1 TACCAAAAATTATGAAAAAT
*
23374670 TACCAATAATTATGAAAAAT
1 TACCAAAAATTATGAAAAAT
23374690 T-CCAAAAATTAT
1 TACCAAAAATTAT
23374702 AATGAATACA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.50, C:0.12, G:0.08, T:0.31
Consensus pattern (20 bp):
TACCAAAAATTATGAAAAAT
Found at i:23377885 original size:29 final size:29
Alignment explanation
Indices: 23377852--23377909 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
23377842 TTAGACTTTT
*
23377852 CATATGTTACCCTAGTTTCTTGCAAGTTC
1 CATATGTTACCCTAGATTCTTGCAAGTTC
23377881 CATATGTTACCCTAGATTCTTGCAAGTTC
1 CATATGTTACCCTAGATTCTTGCAAGTTC
23377910 TAGAGTACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (29 bp):
CATATGTTACCCTAGATTCTTGCAAGTTC
Found at i:23391148 original size:59 final size:58
Alignment explanation
Indices: 23391060--23391220 Score: 153
Period size: 59 Copynumber: 2.7 Consensus size: 58
23391050 TCGGGGCTAC
*
23391060 AAATGGAA-TTTGGAAAGTTTGGGAATAAAATGGTAAATTTTGGCAAAAACAAGGTCAA
1 AAATGGAATTTTGGAAAGTTTGGG-GTAAAATGGTAAATTTTGGCAAAAACAAGGTCAA
* * * * ** * * *
23391118 AAATGAAATTTTGGAAAGTTCGGAGGTAAAACGGTAAGTTTTGGTGAAATCAGGGTTAA
1 AAATGGAATTTTGGAAAGTTTGG-GGTAAAATGGTAAATTTTGGCAAAAACAAGGTCAA
* * * *
23391177 AAATGGGATTTAGGGAAGTTTGGGGGTAAAAATGGTAATTTTTG
1 AAATGGAATTTTGGAAAGTTT-GGGGT-AAAATGGTAAATTTTG
23391221 AAAGTTTTGG
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
58 7 0.09
59 58 0.71
60 17 0.21
ACGTcount: A:0.39, C:0.04, G:0.29, T:0.29
Consensus pattern (58 bp):
AAATGGAATTTTGGAAAGTTTGGGGTAAAATGGTAAATTTTGGCAAAAACAAGGTCAA
Found at i:23391233 original size:30 final size:29
Alignment explanation
Indices: 23391192--23391398 Score: 243
Period size: 30 Copynumber: 6.9 Consensus size: 29
23391182 GGATTTAGGG
* * *
23391192 AAGTTTGGGGGTAAAAATGGTAATTTTTGA
1 AAGTTTTGGGGTCAAAAT-GTAATTTTGGA
23391222 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGG-A
* *
23391252 AAGTTTTGGGGTCAAAATATCATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGG-A
* *
23391282 AAGTTTTAGGGTCAAAATGTAATTTTTAGA
1 AAGTTTTGGGGTCAAAATGTAA-TTTTGGA
* *
23391312 AAGTTTTGGGGTCAAAATATAATTTTAGGG
1 AAGTTTTGGGGTCAAAATGTAATTTT-GGA
* **
23391342 AAGTTTTGGGGTCAAAATGCAATTTTCAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGA
23391371 TAAGTTTTGGGGTCAAAAATGTAATTTT
1 -AAGTTTTGGGGTC-AAAATGTAATTTT
23391399 TGGACAACTT
Statistics
Matches: 153, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
29 13 0.08
30 123 0.80
31 17 0.11
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (29 bp):
AAGTTTTGGGGTCAAAATGTAATTTTGGA
Found at i:23391315 original size:90 final size:89
Alignment explanation
Indices: 23391200--23391400 Score: 273
Period size: 90 Copynumber: 2.2 Consensus size: 89
23391190 GGAAGTTTGG
* *
23391200 GGGTAAAAATGGTAATTTTTGAAAGTTTTGGGGTCAAAATGTAATTTT-GGAAAAGTTTTGGGGT
1 GGGTCAAAAT-GTAATTTTTGAAAGTTTTGGGGTCAAAATATAATTTTAGG-AAAGTTTTGGGGT
* *
23391264 CAAAATATC-ATTTTGGAA-AAGTTTTA
64 CAAAAT-GCAATTTT-CAATAAGTTTTA
*
23391290 GGGTCAAAATGTAATTTTTAGAAAGTTTTGGGGTCAAAATATAATTTTAGGGAAGTTTTGGGGTC
1 GGGTCAAAATGTAATTTTT-GAAAGTTTTGGGGTCAAAATATAATTTTAGGAAAGTTTTGGGGTC
*
23391355 AAAATGCAATTTTCAATAAGTTTTG
65 AAAATGCAATTTTCAATAAGTTTTA
23391380 GGGTCAAAAATGTAATTTTTG
1 GGGTC-AAAATGTAATTTTTG
23391401 GACAACTTAG
Statistics
Matches: 100, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
89 12 0.12
90 72 0.72
91 16 0.16
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (89 bp):
GGGTCAAAATGTAATTTTTGAAAGTTTTGGGGTCAAAATATAATTTTAGGAAAGTTTTGGGGTCA
AAATGCAATTTTCAATAAGTTTTA
Found at i:23392280 original size:15 final size:15
Alignment explanation
Indices: 23392260--23392297 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
23392250 AAACTCAAAG
*
23392260 CTTTCTCTCCAAATT
1 CTTTCTCCCCAAATT
23392275 CTTTCTCCCCAAATT
1 CTTTCTCCCCAAATT
*
23392290 ATTTCTCC
1 CTTTCTCC
23392298 TCTTACTGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.18, C:0.37, G:0.00, T:0.45
Consensus pattern (15 bp):
CTTTCTCCCCAAATT
Found at i:23394141 original size:15 final size:15
Alignment explanation
Indices: 23394117--23394150 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
23394107 ACCACTAGAA
*
23394117 TTTA-AAAGTATATT
1 TTTATAAAGTACATT
23394131 TTTATAAAGTACATT
1 TTTATAAAGTACATT
23394146 TTTAT
1 TTTAT
23394151 GTGTAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (15 bp):
TTTATAAAGTACATT
Found at i:23400729 original size:52 final size:52
Alignment explanation
Indices: 23400535--23400772 Score: 311
Period size: 52 Copynumber: 4.6 Consensus size: 52
23400525 AAATGCAAAA
23400535 AGGTCCGATGACTCTGTGTCATCGTGAGTATATGAATCC-TTACGGATTATG
1 AGGTCCGATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * *
23400586 AGCTCCGATGACTTTGTGTCATCGTGAGTATATGAATCATTTACGGATTATG
1 AGGTCCGATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* *
23400638 GGGCCCGATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
1 AGGTCCGATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * * * * * *
23400690 AGGTCCGATGACTATGTGTCATCATGAGTGTATGGATCCTCTTGCAGATT-TA
1 AGGTCCGATGACTCTGTGTCATCGTGAGTATATGAATCCT-TTACGGATTATG
* *
23400742 AGGTCCGATGACT-TGGTGCCATTGTGAGTAT
1 AGGTCCGATGACTCT-GTGTCATCGTGAGTAT
23400773 TAAATGGGAA
Statistics
Matches: 163, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
51 37 0.23
52 119 0.73
53 7 0.04
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (52 bp):
AGGTCCGATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
Found at i:23401625 original size:21 final size:21
Alignment explanation
Indices: 23401575--23401627 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
23401565 TTGGAATTTT
**
23401575 TTGTATCGGTAGAAGCATGAC
1 TTGTATCGGTAGAAGCAAAAC
* * *
23401596 ATGTTTCGGTAGAAGTAAAAC
1 TTGTATCGGTAGAAGCAAAAC
23401617 TTGTATCGGTA
1 TTGTATCGGTA
23401628 ATATTATCTC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.32
Consensus pattern (21 bp):
TTGTATCGGTAGAAGCAAAAC
Found at i:23405984 original size:52 final size:52
Alignment explanation
Indices: 23405823--23406104 Score: 410
Period size: 52 Copynumber: 5.5 Consensus size: 52
23405813 AAAGGGTTCG
*
23405823 ATGACTCTGTGTCATCGTGAGTATATGAATCC-TTACGGATTATGTGGTCCA
1 ATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCA
* * * *
23405874 ATGACTCTGTGTCATCATGAGTATATGAAT-CTTTACAGATTATGAGGTTCG
1 ATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCA
23405925 ATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCA
1 ATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCA
* **
23405977 ATAACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCTG
1 ATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCA
* * * *
23406029 ATGACTATGTGTCATCGTGAGCATATGGATCCTTTTACGGATT-TAAGGTCCA
1 ATGACTCTGTGTCATCGTGAGTATATGAATCC-TTTACGGATTATGAGGTCCA
23406081 ATGACT-TGGTGTCATCGTGAGTAT
1 ATGACTCT-GTGTCATCGTGAGTAT
23406105 TAAATGGGAA
Statistics
Matches: 207, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
50 1 0.00
51 74 0.36
52 122 0.59
53 10 0.05
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (52 bp):
ATGACTCTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCA
Found at i:23410889 original size:109 final size:110
Alignment explanation
Indices: 23410745--23410958 Score: 247
Period size: 109 Copynumber: 2.0 Consensus size: 110
23410735 TTAAAAAAAT
* * * **
23410745 AATGTTCTTTTATTCTAGGGAATCCGAGAAATTGTGTCATTACCTGTTCGGTATTTTTTTTCTTT
1 AATGTTCTGTTATTCTAGGGAATCCGAGAAATTGTGTCATAACCTATTCGGTATGATTTTTCTTT
** *
23410810 GAACCTTAA-TAATTGAGTATCCTATTT-AAAATCGATAAATGCTC
66 GAACC-TAAGTAATTGAACATCCGATTTAAAAATCGATAAATGCTC
* * * ** *
23410854 AATGTTCTGTTATTTTAGGGGA-CTCGA-AAATTTGTGTCCTAATGTATTGGGTATGATTTTTCT
1 AATGTTCTGTTATTCTAGGGAATC-CGAGAAA-TTGTGTCATAACCTATTCGGTATGATTTTTCT
23410917 TTGAACCTAAGTAATTGAACATCCGATTTAAAAATCGATAAA
64 TTGAACCTAAGTAATTGAACATCCGATTTAAAAATCGATAAA
23410959 CGTTTTTTAT
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
108 7 0.08
109 68 0.78
110 12 0.14
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.41
Consensus pattern (110 bp):
AATGTTCTGTTATTCTAGGGAATCCGAGAAATTGTGTCATAACCTATTCGGTATGATTTTTCTTT
GAACCTAAGTAATTGAACATCCGATTTAAAAATCGATAAATGCTC
Found at i:23419064 original size:23 final size:23
Alignment explanation
Indices: 23419014--23419067 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
23419004 CGTGGCATCC
* *
23419014 AGTCAGCAGCTTCTATAAGATCT
1 AGTCAGCAGCTTCCAAAAGATCT
* *
23419037 AGTCAGTAGCTTCCAAAAGGTCT
1 AGTCAGCAGCTTCCAAAAGATCT
*
23419060 TGTCAGCA
1 AGTCAGCA
23419068 AGGATGAACG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (23 bp):
AGTCAGCAGCTTCCAAAAGATCT
Found at i:23428877 original size:23 final size:23
Alignment explanation
Indices: 23428851--23428902 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
23428841 TGGCATCCTA
*
23428851 TCAGCAGCTTCTAGAAGATCCAG
1 TCAGCAGCTTCCAGAAGATCCAG
* *
23428874 TCAGCAGCTTCCAGAAGGTCTAG
1 TCAGCAGCTTCCAGAAGATCCAG
23428897 TCAGCA
1 TCAGCA
23428903 AGGATGGACG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (23 bp):
TCAGCAGCTTCCAGAAGATCCAG
Found at i:23430715 original size:40 final size:40
Alignment explanation
Indices: 23430662--23430775 Score: 151
Period size: 40 Copynumber: 2.9 Consensus size: 40
23430652 TTTACATAAA
*
23430662 AAACACCGT-AAAAGATAAAGCAATAGCGGTGTTTTTACAT
1 AAACACC-TCAAAAGGTAAAGCAATAGCGGTGTTTTTACAT
* *
23430702 AAACACCTCAAAAGGTAAAGCAATAGAGGTGTTTTTCCAT
1 AAACACCTCAAAAGGTAAAGCAATAGCGGTGTTTTTACAT
* *
23430742 AAA-AGCTACAAAAGGTAAAACAATAGCGGTGTTT
1 AAACACCT-CAAAAGGTAAAGCAATAGCGGTGTTT
23430776 ATGAGGAAGA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 4 0.06
40 62 0.94
ACGTcount: A:0.43, C:0.15, G:0.18, T:0.24
Consensus pattern (40 bp):
AAACACCTCAAAAGGTAAAGCAATAGCGGTGTTTTTACAT
Found at i:23430892 original size:40 final size:41
Alignment explanation
Indices: 23430788--23431019 Score: 301
Period size: 41 Copynumber: 5.7 Consensus size: 41
23430778 GAGGAAGAGT
* * * *
23430788 CGCTAAAGGTCAGAGTATTAGCGACGTTTCT-GATAAAGCGC
1 CGCTAAAGGTCAGAGCATTAGCGGCGCTTATGGA-AAAGCGC
* *
23430829 CGCTAAAGATCAGAGCATTAGCGGTGCTTATGGAAAAGCGC
1 CGCTAAAGGTCAGAGCATTAGCGGCGCTTATGGAAAAGCGC
*
23430870 CGCT-AAGGTTAGAGCATTAGCGGCGCTTATGGAAAAGCGC
1 CGCTAAAGGTCAGAGCATTAGCGGCGCTTATGGAAAAGCGC
* *
23430910 CGCT-AAGGTTAGAGCATTAGCGGCGCTTATGGAAAAGCGT
1 CGCTAAAGGTCAGAGCATTAGCGGCGCTTATGGAAAAGCGC
*
23430950 CGCTAAAGGTCAGAGCATTAGTGGCGCTTATGAGAAAA-CGC
1 CGCTAAAGGTCAGAGCATTAGCGGCGCTTATG-GAAAAGCGC
* * *
23430991 GGTTAAAGGTCAGAGCATTAGCAGCGCTT
1 CGCTAAAGGTCAGAGCATTAGCGGCGCTT
23431020 TCTCATAAAC
Statistics
Matches: 171, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 76 0.44
41 88 0.51
42 7 0.04
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (41 bp):
CGCTAAAGGTCAGAGCATTAGCGGCGCTTATGGAAAAGCGC
Found at i:23430896 original size:23 final size:23
Alignment explanation
Indices: 23430865--23430936 Score: 59
Period size: 23 Copynumber: 3.4 Consensus size: 23
23430855 CTTATGGAAA
23430865 AGCGCCGCTAAGGTTAGAGCATT
1 AGCGCCGCTAAGGTTAGAGCATT
* *
23430888 AGCGGCGCTTATGG--A-A--A--
1 AGCGCCGC-TAAGGTTAGAGCATT
23430905 AGCGCCGCTAAGGTTAGAGCATT
1 AGCGCCGCTAAGGTTAGAGCATT
*
23430928 AGCGGCGCT
1 AGCGCCGCT
23430937 TATGGAAAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 16
0.63 0.09 0.28
Matches are distributed among these distances:
16 4 0.11
17 7 0.19
18 1 0.03
19 2 0.06
21 2 0.06
22 1 0.03
23 15 0.42
24 4 0.11
ACGTcount: A:0.25, C:0.22, G:0.33, T:0.19
Consensus pattern (23 bp):
AGCGCCGCTAAGGTTAGAGCATT
Found at i:23430909 original size:81 final size:83
Alignment explanation
Indices: 23430788--23431019 Score: 303
Period size: 81 Copynumber: 2.9 Consensus size: 83
23430778 GAGGAAGAGT
* * * * * *
23430788 CGCTAAAGGTCAGAGTATTAGCGACGTTTCTGA-TAAAGCGCCGCTAAAGATCAGAGCATTAGCG
1 CGCTAAAGGTCAGAGCATTAGCGGCGCTTATGAGAAAAGCGCCGCTAAAGGTCAGAGCATTAGCG
*
23430852 GTGCTTATGGAAAAGCGC
66 GCGCTTATGGAAAAGCGC
* *
23430870 CGCT-AAGGTTAGAGCATTAGCGGCGCTTATG-GAAAAGCGCCGCT-AAGGTTAGAGCATTAGCG
1 CGCTAAAGGTCAGAGCATTAGCGGCGCTTATGAGAAAAGCGCCGCTAAAGGTCAGAGCATTAGCG
*
23430932 GCGCTTATGGAAAAGCGT
66 GCGCTTATGGAAAAGCGC
* * * *
23430950 CGCTAAAGGTCAGAGCATTAGTGGCGCTTATGAGAAAA-CGCGGTTAAAGGTCAGAGCATTAGCA
1 CGCTAAAGGTCAGAGCATTAGCGGCGCTTATGAGAAAAGCGCCGCTAAAGGTCAGAGCATTAGCG
23431014 GCGCTT
66 GCGCTT
23431020 TCTCATAAAC
Statistics
Matches: 130, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
80 36 0.28
81 63 0.48
82 31 0.24
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (83 bp):
CGCTAAAGGTCAGAGCATTAGCGGCGCTTATGAGAAAAGCGCCGCTAAAGGTCAGAGCATTAGCG
GCGCTTATGGAAAAGCGC
Found at i:23431031 original size:41 final size:41
Alignment explanation
Indices: 23430832--23431019 Score: 136
Period size: 40 Copynumber: 4.6 Consensus size: 41
23430822 AAAGCGCCGC
* * * * * *
23430832 TAAAGATCAGAGCATTAGCGGTGCTTAT-GGAAAAGCGCCGC
1 TAAAGGTCAGAGCATTAGCAGCGCTTATCAGAAAA-CGCGGT
* * * * *
23430873 T-AAGGTTAGAGCATTAGCGGCGCTTAT-GGAAAAGCGCCGC
1 TAAAGGTCAGAGCATTAGCAGCGCTTATCAGAAAA-CGCGGT
* * * *
23430913 T-AAGGTTAGAGCATTAGCGGCGCTTAT-GGAAAA-GCGTCGC
1 TAAAGGTCAGAGCATTAGCAGCGCTTATCAGAAAACGCG--GT
** *
23430953 TAAAGGTCAGAGCATTAGTGGCGCTTATGAGAAAACGCGGT
1 TAAAGGTCAGAGCATTAGCAGCGCTTATCAGAAAACGCGGT
23430994 TAAAGGTCAGAGCATTAGCAGCGCTT
1 TAAAGGTCAGAGCATTAGCAGCGCTT
23431020 TCTCATAAAC
Statistics
Matches: 132, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
38 2 0.02
40 72 0.55
41 50 0.38
42 5 0.04
43 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.31, T:0.21
Consensus pattern (41 bp):
TAAAGGTCAGAGCATTAGCAGCGCTTATCAGAAAACGCGGT
Found at i:23446693 original size:18 final size:21
Alignment explanation
Indices: 23446651--23446696 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 21
23446641 ACGTATTTGG
*
23446651 ATTTTTTGATAAATTATTATT
1 ATTTTTTGATAAATTATTATA
23446672 ATTTTTT-A-AAATTA-TATA
1 ATTTTTTGATAAATTATTATA
23446690 ATTTTTT
1 ATTTTTT
23446697 TATTATAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 10 0.42
19 6 0.25
20 1 0.04
21 7 0.29
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTTTTTGATAAATTATTATA
Found at i:23446697 original size:19 final size:19
Alignment explanation
Indices: 23446651--23446699 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
23446641 ACGTATTTGG
*
23446651 ATTTTTTGATAAATTATTA
1 ATTTTTTTATAAATTATTA
*
23446670 TTATTTTTTA-AAATTATATA
1 AT-TTTTTTATAAATTAT-TA
23446690 ATTTTTTTAT
1 ATTTTTTTAT
23446700 TATAAATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
ATTTTTTTATAAATTATTA
Found at i:23449865 original size:18 final size:18
Alignment explanation
Indices: 23449842--23449876 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
23449832 CAACCCATCA
23449842 TCAATTAGGAA-TTAGTTT
1 TCAATTA-GAATTTAGTTT
23449860 TCAATTAGAATTTAGTT
1 TCAATTAGAATTTAGTT
23449877 ACTAGAGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.46
Consensus pattern (18 bp):
TCAATTAGAATTTAGTTT
Found at i:23453379 original size:21 final size:21
Alignment explanation
Indices: 23453346--23453385 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23453336 TTATCTTTCA
*
23453346 AGTTTTAAATTTCAGATTTTG
1 AGTTTTAAATTTCAAATTTTG
* *
23453367 AGTTTTGAGTTTCAAATTT
1 AGTTTTAAATTTCAAATTT
23453386 CAAATAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.05, G:0.15, T:0.53
Consensus pattern (21 bp):
AGTTTTAAATTTCAAATTTTG
Found at i:23454337 original size:13 final size:13
Alignment explanation
Indices: 23454299--23454337 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
23454289 ATTTTTCATT
23454299 TATTTATATTTAA
1 TATTTATATTTAA
* *
23454312 TAATTATAATTAA
1 TATTTATATTTAA
*
23454325 TATTTATTTTTAA
1 TATTTATATTTAA
23454338 ACCCTTCAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TATTTATATTTAA
Found at i:23456062 original size:41 final size:41
Alignment explanation
Indices: 23456011--23456097 Score: 147
Period size: 41 Copynumber: 2.1 Consensus size: 41
23456001 CCATTTTTCT
*
23456011 GAGATTACTTGATGAGCATGCTGAAGGAGCCTTTCAAGCGA
1 GAGACTACTTGATGAGCATGCTGAAGGAGCCTTTCAAGCGA
* *
23456052 GAGACTACTTGATGGGCATGTTGAAGGAGCCTTTCAAGCGA
1 GAGACTACTTGATGAGCATGCTGAAGGAGCCTTTCAAGCGA
23456093 GAGAC
1 GAGAC
23456098 GAGGAAGGCT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (41 bp):
GAGACTACTTGATGAGCATGCTGAAGGAGCCTTTCAAGCGA
Found at i:23461976 original size:14 final size:14
Alignment explanation
Indices: 23461942--23461978 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
23461932 ATTTTATTTC
23461942 AAAT-TTTTAAATT
1 AAATATTTTAAATT
23461955 -AATAATTTTAAATT
1 AAAT-ATTTTAAATT
23461969 AAATATTTTA
1 AAATATTTTA
23461979 TTTATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
14 15 0.71
15 3 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
AAATATTTTAAATT
Found at i:23462330 original size:13 final size:13
Alignment explanation
Indices: 23462309--23462351 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
23462299 GTTTTTACAT
23462309 AAATAATACAAAA
1 AAATAATACAAAA
*
23462322 AAATTATACACCAAA
1 AAATAATACA--AAA
*
23462337 ATATAATACAAAA
1 AAATAATACAAAA
23462350 AA
1 AA
23462352 TAAAATTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
13 13 0.54
15 11 0.46
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.19
Consensus pattern (13 bp):
AAATAATACAAAA
Found at i:23470394 original size:20 final size:20
Alignment explanation
Indices: 23470369--23470412 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
23470359 TTTTTTCCAG
23470369 TTAAAGCATAAGATACTCTT
1 TTAAAGCATAAGATACTCTT
23470389 TTAAAGCATAAGATACTCTT
1 TTAAAGCATAAGATACTCTT
23470409 TTAA
1 TTAA
23470413 GATAAAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (20 bp):
TTAAAGCATAAGATACTCTT
Found at i:23471075 original size:3 final size:3
Alignment explanation
Indices: 23471067--23471092 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
23471057 CTTCAGTCTT
23471067 CAC CAC CAC CAC CAC CAC CAC CAC CA
1 CAC CAC CAC CAC CAC CAC CAC CAC CA
23471093 TCATCATGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.65, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:23480962 original size:18 final size:20
Alignment explanation
Indices: 23480920--23480967 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
23480910 ACGTATTTGG
*
23480920 ATTTTTTGATAAATTATTATT
1 ATTTTTT-ATAAATTATTATA
23480941 ATTTTTTA-AAATTA-TATA
1 ATTTTTTATAAATTATTATA
23480959 ATTTTTTAT
1 ATTTTTTAT
23480968 TATAAATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 11 0.44
19 6 0.24
20 1 0.04
21 7 0.28
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (20 bp):
ATTTTTTATAAATTATTATA
Found at i:23486843 original size:59 final size:58
Alignment explanation
Indices: 23486769--23486928 Score: 187
Period size: 59 Copynumber: 2.7 Consensus size: 58
23486759 GTTCGAGATT
* ** *
23486769 AAAATGAAATTTTTTGGAAATTTAAGGGTAAAATGGTAATTTTAAAAAGTTCGGGGGTTA
1 AAAATGTAA-TTTTTGGAAATTTAAGGGTAAAATGGTAATTTTAAAAAGTTCAAGGG-CA
*** *
23486829 AAAATAG-AATTTTTGGAAATTTAAGGGTAAAATGGTAATTTTTGGAAGTTTAAGGGCA
1 AAAAT-GTAATTTTTGGAAATTTAAGGGTAAAATGGTAATTTTAAAAAGTTCAAGGGCA
* * *
23486887 AAAATGTAATTTTTGGAAGTTTGAGGGTAAAAAGGTAATTTT
1 AAAATGTAATTTTTGGAAATTTAAGGGTAAAATGGTAATTTT
23486929 TGTGAAGTTC
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
57 1 0.01
58 38 0.43
59 41 0.47
60 7 0.08
61 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.24, T:0.36
Consensus pattern (58 bp):
AAAATGTAATTTTTGGAAATTTAAGGGTAAAATGGTAATTTTAAAAAGTTCAAGGGCA
Found at i:23486943 original size:117 final size:114
Alignment explanation
Indices: 23486689--23487059 Score: 313
Period size: 117 Copynumber: 3.2 Consensus size: 114
23486679 GGGCAAAATA
* * * * *
23486689 GTAATTTTTGG-AGTTC-GAGTCAAAAATGGAATTTTTGGGACA-TTAGGGGGTAAAATGGTAAT
1 GTAATTTTTGGAAGTTCGGGGTTAAAAAT-GAATTTTTAGGAAATTTA-AGGGTAAAATGGTAAT
* * *** * * * *
23486751 TTTTGGATGTTCGAGATTAAAATGAAATTTTTTGGAAATTTAAGGGTAAAATG
64 TTTTGGAAGTT-TAGGGCAAAATGTAA-TTTTTGGAAGTTTGAGGGTAAAAAG
***
23486804 GTAATTTTAAAAAGTTCGGGGGTTAAAAATAGAATTTTT-GGAAATTTAAGGGTAAAATGGTAAT
1 GTAATTTTTGGAAGTTC-GGGGTTAAAAAT-GAATTTTTAGGAAATTTAAGGGTAAAATGGTAAT
23486868 TTTTGGAAGTTTAAGGGCAAAAATGTAATTTTTGGAAGTTTGAGGGTAAAAAG
64 TTTTGGAAGTTT-AGGGC-AAAATGTAATTTTTGGAAGTTTGAGGGTAAAAAG
* * * ** *
23486921 GTAATTTTTGTGAAGTTCGGGG-TAAAAATGTATTTTTATGAAGTTCGAGGGAAAAAT-GTAATT
1 GTAATTTTTG-GAAGTTCGGGGTTAAAAATGAATTTTTAGGAAATTTAAGGGTAAAATGGTAA-T
* * * *
23486984 TTTTGAAAGTTTAGGAGTCAAAATGTAATTTTTAGAAAGTTTGAGGGTTAAAAT
64 TTTTGGAAGTTTAGG-G-CAAAATGTAATTTTT-GGAAGTTTGAGGGTAAAAAG
* *
23487038 ATGATTTTTGGGAAGTTCGGGG
1 GTAATTTTT-GGAAGTTCGGGG
23487060 ACCTTTTGGA
Statistics
Matches: 211, Mismatches: 32, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
115 22 0.10
116 53 0.25
117 101 0.48
118 35 0.17
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (114 bp):
GTAATTTTTGGAAGTTCGGGGTTAAAAATGAATTTTTAGGAAATTTAAGGGTAAAATGGTAATTT
TTGGAAGTTTAGGGCAAAATGTAATTTTTGGAAGTTTGAGGGTAAAAAG
Found at i:23486948 original size:58 final size:58
Alignment explanation
Indices: 23486689--23487059 Score: 272
Period size: 58 Copynumber: 6.4 Consensus size: 58
23486679 GGGCAAAATA
* * * * * *
23486689 GTAATTTTTGG-AGTTC-GAGTCAAAAATGGAATTTTTGGGACA-TTAGGGGGTAAAATG
1 GTAATTTTTGGAAGTTCGGGGT-AAAAATGTAATTTTTAGGA-AGTTTGAGGGTAAAAAG
* * * * * * * * *
23486746 GTAATTTTTGGATGTTCGAGATTAAAATGAAATTTTTTGGAAATTTAAGGGTAAAATG
1 GTAATTTTTGGAAGTTCGGGGTAAAAATGTAATTTTTAGGAAGTTTGAGGGTAAAAAG
*** * * *
23486804 GTAATTTTAAAAAGTTCGGGGGTTAAAAATAG-AATTTTT-GGAAATTTAAGGGTAAAATG
1 GTAATTTTTGGAAGTTC-GGGG-TAAAAAT-GTAATTTTTAGGAAGTTTGAGGGTAAAAAG
** *
23486863 GTAATTTTTGGAAGTTTAAGGGCAAAAATGTAATTTTT-GGAAGTTTGAGGGTAAAAAG
1 GTAATTTTTGGAAG-TTCGGGGTAAAAATGTAATTTTTAGGAAGTTTGAGGGTAAAAAG
* * *
23486921 GTAATTTTTGTGAAGTTCGGGGTAAAAATGT-ATTTTTATGAAGTTCGAGGG-AAAAAT
1 GTAATTTTTG-GAAGTTCGGGGTAAAAATGTAATTTTTAGGAAGTTTGAGGGTAAAAAG
* * * * * * *
23486978 GTAATTTTTTGAAAGTTTAGGAGTCAAAATGTAATTTTTAGAAAGTTTGAGGGTTAAAAT
1 GTAA-TTTTTGGAAG-TTCGGGGTAAAAATGTAATTTTTAGGAAGTTTGAGGGTAAAAAG
* *
23487038 ATGATTTTTGGGAAGTTCGGGG
1 GTAATTTTT-GGAAGTTCGGGG
23487060 ACCTTTTGGA
Statistics
Matches: 254, Mismatches: 45, Indels: 28
0.78 0.14 0.09
Matches are distributed among these distances:
57 31 0.12
58 128 0.50
59 68 0.27
60 26 0.10
61 1 0.00
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (58 bp):
GTAATTTTTGGAAGTTCGGGGTAAAAATGTAATTTTTAGGAAGTTTGAGGGTAAAAAG
Found at i:23486955 original size:28 final size:30
Alignment explanation
Indices: 23486674--23487056 Score: 200
Period size: 29 Copynumber: 13.1 Consensus size: 30
23486664 TTTTAGACAC
*
23486674 TTCGAGGG-CAAAATAGTAATTTTTG-G-AG
1 TTCGAGGGTAAAAAT-GTAATTTTTGTGAAG
* *
23486702 TTCGA--GTCAAAAATGGAATTTTTGGGACA-
1 TTCGAGGGT-AAAAATGTAATTTTTGTGA-AG
* * *
23486731 TTAGGGGGT-AAAATGGTAATTTTTG-GATG
1 TTCGAGGGTAAAAAT-GTAATTTTTGTGAAG
* * * *
23486760 TTCGA-GATTAAAATGAAATTTTT-TGGAAA
1 TTCGAGGGTAAAAATGTAATTTTTGT-GAAG
** ***
23486789 TTTAAGGGT-AAAATGGTAA-TTTTAAAAAG
1 TTCGAGGGTAAAAAT-GTAATTTTTGTGAAG
* *
23486818 TTCGGGGGTTAAAAATAG-AATTTTTG-GAAA
1 TTCGAGGG-TAAAAAT-GTAATTTTTGTGAAG
**
23486848 TTTAAGGGT-AAAATGGTAATTTTTG-GAAG
1 TTCGAGGGTAAAAAT-GTAATTTTTGTGAAG
** *
23486877 TTTAAGGGCAAAAATGTAATTTTTG-GAAG
1 TTCGAGGGTAAAAATGTAATTTTTGTGAAG
* *
23486906 TTTGAGGGTAAAAAGGTAATTTTTGTGAAG
1 TTCGAGGGTAAAAATGTAATTTTTGTGAAG
*
23486936 TTCG-GGGTAAAAATGT-ATTTTTATGAAG
1 TTCGAGGGTAAAAATGTAATTTTTGTGAAG
23486964 TTCGAGGG-AAAAATGTAATTTTT-TGAAAG
1 TTCGAGGGTAAAAATGTAATTTTTGTG-AAG
* * *
23486993 TT-TAGGAGTCAAAATGTAATTTTTAG-AAAG
1 TTCGAGG-GTAAAAATGTAATTTTT-GTGAAG
* * * * *
23487023 TTTGAGGGTTAAAATATGATTTTTGGGAAG
1 TTCGAGGGTAAAAATGTAATTTTTGTGAAG
23487053 TTCG
1 TTCG
23487057 GGGACCTTTT
Statistics
Matches: 278, Mismatches: 47, Indels: 58
0.73 0.12 0.15
Matches are distributed among these distances:
26 1 0.00
27 9 0.03
28 55 0.20
29 122 0.44
30 76 0.27
31 15 0.05
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (30 bp):
TTCGAGGGTAAAAATGTAATTTTTGTGAAG
Found at i:23487054 original size:30 final size:29
Alignment explanation
Indices: 23486739--23487054 Score: 216
Period size: 29 Copynumber: 10.8 Consensus size: 29
23486729 CATTAGGGGG
* * *
23486739 TAAAATGGTAATTTTTGGATGTTCGA-GAT
1 TAAAAT-GTAATTTTTGGAAGTTTGAGGGT
* * *
23486768 TAAAATGAAATTTTTTGGAAATTTAAGGG-
1 TAAAATGTAA-TTTTTGGAAGTTTGAGGGT
*** * *
23486797 TAAAATGGTAATTTTAAAAAGTTCGGGGGT
1 TAAAAT-GTAATTTTTGGAAGTTTGAGGGT
* *
23486827 TAAAAATAG-AATTTTTGGAAATTTAAGGG-
1 T-AAAAT-GTAATTTTTGGAAGTTTGAGGGT
* *
23486856 TAAAATGGTAATTTTTGGAAGTTTAAGGGC
1 TAAAAT-GTAATTTTTGGAAGTTTGAGGGT
*
23486886 AAAAATGTAATTTTTGGAAGTTTGAGGGT
1 TAAAATGTAATTTTTGGAAGTTTGAGGGT
* * *
23486915 AAAAAGGTAATTTTTGTGAAGTTCG-GGGT
1 TAAAATGTAATTTTTG-GAAGTTTGAGGGT
* * *
23486944 AAAAATGT-ATTTTTATGAAGTTCGAGGG-
1 TAAAATGTAATTTTT-GGAAGTTTGAGGGT
* *
23486972 AAAAATGTAATTTTTTGAAAGTTT-AGGAGT
1 TAAAATGTAA-TTTTTGGAAGTTTGAGG-GT
* *
23487002 CAAAATGTAATTTTTAGAAAGTTTGAGGGT
1 TAAAATGTAATTTTT-GGAAGTTTGAGGGT
* *
23487032 TAAAATATGATTTTTGGGAAGTT
1 TAAAATGTAATTTTT-GGAAGTT
23487055 CGGGGACCTT
Statistics
Matches: 231, Mismatches: 40, Indels: 31
0.76 0.13 0.10
Matches are distributed among these distances:
28 34 0.15
29 116 0.50
30 72 0.31
31 9 0.04
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.37
Consensus pattern (29 bp):
TAAAATGTAATTTTTGGAAGTTTGAGGGT
Found at i:23488744 original size:6 final size:6
Alignment explanation
Indices: 23488735--23488798 Score: 78
Period size: 6 Copynumber: 11.0 Consensus size: 6
23488725 TAGAATAATT
** *
23488735 TTTAAA TTTAAA AATAAA TTTAAA CTTAAA -TTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
23488782 -ATAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA
23488799 ATAAACTTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
5 9 0.18
6 40 0.82
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (6 bp):
TTTAAA
Found at i:23488771 original size:17 final size:17
Alignment explanation
Indices: 23488717--23488823 Score: 135
Period size: 17 Copynumber: 6.2 Consensus size: 17
23488707 CTTTTATTCT
* *
23488717 TTTAAATTTAGAATAATT
1 TTTAAATTTAAAATAA-A
23488735 TTTAAATTTAAAAATAAA
1 TTTAAATTT-AAAATAAA
* *
23488753 TTTAAACTTAAATTAAA
1 TTTAAATTTAAAATAAA
23488770 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
23488787 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
*
23488804 CTT-AATCTTAAAATAAA
1 TTTAAAT-TTAAAATAAA
23488821 TTT
1 TTT
23488824 TAAAAAATGG
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
16 3 0.04
17 53 0.67
18 17 0.22
19 6 0.08
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:23488774 original size:11 final size:11
Alignment explanation
Indices: 23488736--23488794 Score: 66
Period size: 11 Copynumber: 5.2 Consensus size: 11
23488726 AGAATAATTT
23488736 TTAAATTTAAAA
1 TTAAATTT-AAA
*
23488748 ATAAATTTAAA
1 TTAAATTTAAA
23488759 CTTAAA-TTAAA
1 -TTAAATTTAAA
23488770 TTTAAATTTAAA
1 -TTAAATTTAAA
*
23488782 ATAAATTTAAA
1 TTAAATTTAAA
23488793 TT
1 TT
23488795 TAAAATAAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
11 24 0.60
12 16 0.40
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:23493007 original size:34 final size:32
Alignment explanation
Indices: 23492969--23493044 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 32
23492959 TAATTGAGTC
*
23492969 CAAATTTTAAATAAGTTTGAATTTATTTTAAATT
1 CAAATTTT--ATAAGTTTGAATTTACTTTAAATT
* *
23493003 CAAATTCATTTTGAGTTTGAATTTACTTTAAATT
1 CAAATT--TTATAAGTTTGAATTTACTTTAAATT
*
23493037 TAAATTTT
1 CAAATTTT
23493045 TTTTAAATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
32 2 0.06
34 32 0.89
36 2 0.06
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (32 bp):
CAAATTTTATAAGTTTGAATTTACTTTAAATT
Found at i:23493008 original size:17 final size:17
Alignment explanation
Indices: 23492988--23493058 Score: 70
Period size: 17 Copynumber: 4.2 Consensus size: 17
23492978 AATAAGTTTG
*
23492988 AATTTATTTTAAATTCA
1 AATTTATTTTAAATTTA
* * * *
23493005 AATTCATTTTGAGTTTG
1 AATTTATTTTAAATTTA
*
23493022 AATTTACTTTAAATTTA
1 AATTTATTTTAAATTTA
* *
23493039 AATTTTTTTTAAATTAA
1 AATTTATTTTAAATTTA
23493056 AAT
1 AAT
23493059 AAAATTAAAA
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (17 bp):
AATTTATTTTAAATTTA
Found at i:23494769 original size:30 final size:29
Alignment explanation
Indices: 23494692--23494896 Score: 105
Period size: 30 Copynumber: 6.9 Consensus size: 29
23494682 CCCTAAAGGT
*
23494692 CCCTAAA-TTGTCTAAAAGTTACATTTTT-A
1 CCCTAAACTT-TC-AAAAATTACATTTTTAA
* * *
23494721 CCCTTTAACTTTCCAAAATTTCATTTTTAA
1 CCC-TAAACTTTCAAAAATTACATTTTTAA
* * *
23494751 CCCTAAATTTTCTAAAAATTACATATTTAC
1 CCCTAAACTTTC-AAAAATTACATTTTTAA
* * * *
23494781 CCCTGAACTTTCCAAAATTCCATTTTTGA
1 CCCTAAACTTTCAAAAATTACATTTTTAA
* ***
23494810 CCTTGATTTTTTCAAAAATTACCA-TTTT-A
1 CCCT-AAACTTTCAAAAATTA-CATTTTTAA
* * *
23494839 CCCTCGAA-TATCAAAAAATTCCATTTTTAA
1 CCCT-AAACTTTC-AAAAATTACATTTTTAA
* *
23494869 CCCCAAAACTTTCAAAAATCACCATTTT
1 -CCCTAAACTTTCAAAAATTA-CATTTT
23494897 ACCCCCAGAT
Statistics
Matches: 128, Mismatches: 36, Indels: 22
0.69 0.19 0.12
Matches are distributed among these distances:
28 5 0.04
29 52 0.41
30 55 0.43
31 16 0.12
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.40
Consensus pattern (29 bp):
CCCTAAACTTTCAAAAATTACATTTTTAA
Found at i:23494790 original size:59 final size:59
Alignment explanation
Indices: 23494692--23494901 Score: 198
Period size: 59 Copynumber: 3.6 Consensus size: 59
23494682 CCCTAAAGGT
* * * * *
23494692 CCCTAAATTGTCTAAAAGTTA-CATTTTTACCCTTTAACTTTCCAAAATTTCATTTTTAA
1 CCCTAAATTTTCTAAAAATTACCA-TTTTACCCCTGAACTTTCCAAAATTCCATTTTTAA
*
23494751 CCCTAAATTTTCTAAAAATTA-CATATTTACCCCTGAACTTTCCAAAATTCCATTTTTGA
1 CCCTAAATTTTCTAAAAATTACCAT-TTTACCCCTGAACTTTCCAAAATTCCATTTTTAA
** * * *
23494810 -CCTTGATTTTTTCAAAAATTACCATTTTA-CCCTCGAA-TATCAAAAAATTCCATTTTTAA
1 CCCTAAATTTTCT-AAAAATTACCATTTTACCCCT-GAACTTTC-CAAAATTCCATTTTTAA
* * *
23494869 CCCCAAAACTTTC-AAAAATCACCATTTTACCCC
1 -CCCTAAATTTTCTAAAAATTACCATTTTACCCC
23494902 CAGATGTCTA
Statistics
Matches: 125, Mismatches: 18, Indels: 15
0.79 0.11 0.09
Matches are distributed among these distances:
58 17 0.14
59 96 0.77
60 6 0.05
61 6 0.05
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (59 bp):
CCCTAAATTTTCTAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAA
Found at i:23494915 original size:59 final size:59
Alignment explanation
Indices: 23494819--23494959 Score: 167
Period size: 59 Copynumber: 2.4 Consensus size: 59
23494809 ACCTTGATTT
* *
23494819 TTTCAAAAATTACCATTTTACCCTCGAATATCAAAAAATTCCATTTTTAACCCCAAAAC
1 TTTCAAAAATTACCATTTTACCCCCGAATATCAAAAAAATCCATTTTTAACCCCAAAAC
* * * * * * * *
23494878 TTTCAAAAATCACCATTTTACCCCC-AGATGTCTAAAAAATCCATTTTTGATCTCGAACC
1 TTTCAAAAATTACCATTTTACCCCCGA-ATATCAAAAAAATCCATTTTTAACCCCAAAAC
*
23494937 TTCCAAAAATTACCATTTTACCC
1 TTTCAAAAATTACCATTTTACCC
23494960 TCGATTGTCC
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
58 1 0.01
59 68 0.99
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.33
Consensus pattern (59 bp):
TTTCAAAAATTACCATTTTACCCCCGAATATCAAAAAAATCCATTTTTAACCCCAAAAC
Found at i:23494963 original size:30 final size:29
Alignment explanation
Indices: 23494822--23494963 Score: 73
Period size: 30 Copynumber: 4.8 Consensus size: 29
23494812 TTGATTTTTT
23494822 CAAAAATTACCATTTTACCCTCGAATATC
1 CAAAAATTACCATTTTACCCTCGAATATC
* * *
23494851 AAAAAATT-CCATTTTTAACCC-C-AAAACTTT
1 CAAAAATTACCA-TTTT-ACCCTCGAATA--TC
* * *
23494881 CAAAAATCACCATTTTACCC-CCAGATGTC
1 CAAAAATTACCATTTTACCCTCGA-ATATC
* * *
23494910 TAAAAAAT-CCATTTTTGA-TCTCGAACCT-TC
1 CAAAAATTACCA-TTTT-ACCCTCGAA--TATC
23494940 CAAAAATTACCATTTTACCCTCGA
1 CAAAAATTACCATTTTACCCTCGA
23494964 TTGTCCAGAA
Statistics
Matches: 83, Mismatches: 16, Indels: 27
0.66 0.13 0.21
Matches are distributed among these distances:
28 9 0.11
29 30 0.36
30 36 0.43
31 8 0.10
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.31
Consensus pattern (29 bp):
CAAAAATTACCATTTTACCCTCGAATATC
Found at i:23499983 original size:25 final size:24
Alignment explanation
Indices: 23499953--23500000 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
23499943 ATAAAGGAAA
23499953 AAGAAAAAGA-AAAAATAAGAAAAAC
1 AAGAAAAA-ACAAAAAT-AGAAAAAC
23499978 AAGAAAAAACAAAAATAGAAAAA
1 AAGAAAAAACAAAAATAGAAAAA
23500001 GGGAGAGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.81, C:0.04, G:0.10, T:0.04
Consensus pattern (24 bp):
AAGAAAAAACAAAAATAGAAAAAC
Found at i:23499991 original size:16 final size:15
Alignment explanation
Indices: 23499950--23499992 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
23499940 TGAATAAAGG
*
23499950 AAAAAGAAAAAGAAA
1 AAAAAGAAAAACAAA
23499965 AAATAAGAAAAACAAGA
1 AAA-AAGAAAAACAA-A
*
23499982 AAAAACAAAAA
1 AAAAAGAAAAA
23499993 TAGAAAAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 17 0.71
17 4 0.17
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.02
Consensus pattern (15 bp):
AAAAAGAAAAACAAA
Found at i:23501330 original size:48 final size:48
Alignment explanation
Indices: 23501251--23501491 Score: 295
Period size: 48 Copynumber: 5.0 Consensus size: 48
23501241 AAGACATGAC
* * *
23501251 GGGAAAGATTTAAGACCGCAACGACGGATCCAGTACCATGAAGACACAA
1 GGGAAAGATCTAAG-CCGCAACGGCGGATCCAGTACCACGAAGACACAA
* * * * *
23501300 GGGAAAGATCTAAGCCGCAATGGCGAATCCAATACCACGAAAACACGAC
1 GGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAGACAC-AA
* * *
23501349 GAGAAAGATCTAAGACCGCAACGGTGGATCCAATACCACGAAGACACAA
1 GGGAAAGATCTAAG-CCGCAACGGCGGATCCAGTACCACGAAGACACAA
* * *
23501398 GGGAAAGATCTAAGCCGCGACGGTGGATCCAGTACCAAGAAGACACCAA
1 GGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAGACA-CAA
* *
23501447 -GGAAAGATCTAAGCCGTAACGGCGGATCCAGTACCACGAAAACAC
1 GGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAGACAC
23501492 GACGGGAACG
Statistics
Matches: 166, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
47 1 0.01
48 93 0.56
49 44 0.27
50 28 0.17
ACGTcount: A:0.40, C:0.25, G:0.24, T:0.11
Consensus pattern (48 bp):
GGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAGACACAA
Found at i:23501428 original size:98 final size:97
Alignment explanation
Indices: 23501238--23501491 Score: 321
Period size: 98 Copynumber: 2.6 Consensus size: 97
23501228 AAATGAGCTG
* * * *
23501238 AGAAAGACATGACGGGAAAGATTTAAGACCGCAACGACGGATCCAGTACCATGAAGACACAAGGG
1 AGAAA-ACACGAC-GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCACGAAGACACAAGGG
*
23501303 AAAGATCTAAGCCGCAATGGCGAATCCAATACCA
64 AAAGATCTAAGCCGCAACGGCGAATCCAATACCA
* * *
23501337 CGAAAACACGACGAGAAAGATCTAAGACCGCAACGGTGGATCCAATACCACGAAGACACAAGGGA
1 AGAAAACACGACG-GAAAGATCTAAGACCGCAACGGCGGATCCAGTACCACGAAGACACAAGGGA
* * * *
23501402 AAGATCTAAGCCGCGACGGTGGATCCAGTACCA
65 AAGATCTAAGCCGCAACGGCGAATCCAATACCA
* * * * *
23501435 AGAAGACACCAAGGAAAGATCTAAG-CCGTAACGGCGGATCCAGTACCACGAAAACAC
1 AGAAAACACGACGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCACGAAGACAC
23501492 GACGGGAACG
Statistics
Matches: 134, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
96 28 0.21
97 13 0.10
98 89 0.66
99 4 0.03
ACGTcount: A:0.41, C:0.24, G:0.24, T:0.11
Consensus pattern (97 bp):
AGAAAACACGACGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCACGAAGACACAAGGGAA
AGATCTAAGCCGCAACGGCGAATCCAATACCA
Found at i:23501559 original size:82 final size:82
Alignment explanation
Indices: 23501417--23501573 Score: 208
Period size: 82 Copynumber: 1.9 Consensus size: 82
23501407 CTAAGCCGCG
* * *
23501417 ACGGTGGATCCAGTACCAAGAAGACACCAAGGAAAGATCTAAGCCGTAACGGCGGATCCAGTACC
1 ACGGCGGATCCAGTACCAAGAAGACACCAAGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACA
23501482 ACGAAAACACGACGGGA
66 ACGAAAACACGACGGGA
* ** * * *
23501499 ACGGCGGATCCTGTACCGCGAAGACA-CAAGGGAAAGATCTAAGCCGCGATGGTGGATCCAGTAC
1 ACGGCGGATCCAGTACCAAGAAGACACCAA-GGAAAGATCTAAGCCGCAACGGCGGATCCAGTAC
*
23501563 AACGAAGACAC
65 AACGAAAACAC
23501574 CAGGGAAAGA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
81 3 0.05
82 61 0.95
ACGTcount: A:0.36, C:0.25, G:0.28, T:0.11
Consensus pattern (82 bp):
ACGGCGGATCCAGTACCAAGAAGACACCAAGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACA
ACGAAAACACGACGGGA
Found at i:23501579 original size:48 final size:48
Alignment explanation
Indices: 23501498--23502132 Score: 748
Period size: 48 Copynumber: 13.1 Consensus size: 48
23501488 ACACGACGGG
* *
23501498 AACGGCGGATCCTGTACCGCGAAGACACAAGGGAAAGATCTAAGCCGC
1 AACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGC
* * * * *
23501546 GATGGTGGATCCAGTACAACGAAGACACCAGGGAAAGATCTAAGCCGC
1 AACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGC
* * * *
23501594 GACGGCGGATCCAGTACCACGAAGACATGAAGGAAAAGATCTAAGTCGC
1 AACGGCGGATCCAGTACCACGAAGACA-CAAGGGAAAGATCTAAGCCGC
* *
23501643 AACGGCGAATCCAGTACCACGAAGACACCAGGGAAAGATCTAAGCCGC
1 AACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGC
* * * * *
23501691 AACGGCGAATCCAGTACCACAAAAACACGATGGGAAAGATCTAAGACCAC
1 AACGGCGGATCCAGTACCACGAAGACAC-AAGGGAAAGATCTAAG-CCGC
* * * * *
23501741 AACGGCAGATCTAGTACCGCGACGACACAAGGGAAAGATCTAAGCCGT
1 AACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGC
* * *
23501789 GACGGCGGATCCAGTACCGCGAAGACACCAGGGAAAGATCTAAGCCGC
1 AACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGC
* * * * *
23501837 AATGGCGGATCCATTACCACGAAAACATGACGGGAAAGATCTAAGACCGC
1 AACGGCGGATCCAGTACCACGAAGACA-CAAGGGAAAGATCTAAG-CCGC
* *
23501887 AACGGCGGATCCAGTACCGCGAAGACACAAGGGAAAAATCTAAGCCGC
1 AACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGC
* * *
23501935 AACGGTGGATCCAGTACCACGAAGACACCAGGGAAATATCTAAGCCGC
1 AACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGC
* * * * *
23501983 AATGGTGGATCCAGTACCACGAAAACACATCGGGAAAGATCTAAGACCCC
1 AACGGCGGATCCAGTACCACGAAGACACA-AGGGAAAGATCTAAG-CCGC
* * * *
23502033 AATGACGGATCCAGTACCGCGAAGACACAAGGGAAAGATCTAAGTCGC
1 AACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGC
* * * * *
23502081 GACGGTGGATCCAGTACCACGAAGACACAGAGGGAAAGGTATAAGTCGC
1 AACGGCGGATCCAGTACCACGAAGACACA-AGGGAAAGATCTAAGCCGC
23502130 AAC
1 AAC
23502133 CTTGTACCTC
Statistics
Matches: 498, Mismatches: 81, Indels: 15
0.84 0.14 0.03
Matches are distributed among these distances:
48 274 0.55
49 145 0.29
50 79 0.16
ACGTcount: A:0.37, C:0.25, G:0.27, T:0.11
Consensus pattern (48 bp):
AACGGCGGATCCAGTACCACGAAGACACAAGGGAAAGATCTAAGCCGC
Found at i:23501601 original size:130 final size:130
Alignment explanation
Indices: 23501368--23501616 Score: 410
Period size: 130 Copynumber: 1.9 Consensus size: 130
23501358 CTAAGACCGC
*
23501368 AACGGTGGATCCAATACCACGAAGACACAAGGGAAAGATCTAAGCCGCGACGGTGGATCCAGTAC
1 AACGGCGGATCCAATACCACGAAGACACAAGGGAAAGATCTAAGCCGCGACGGTGGATCCAGTAC
*
23501433 CAAGAAGACACCAAGGAAAGATCTAAGCCGTAACGGCGGATCCAGTACCACGAAAACACGACGGG
66 CAAGAAGACACCAAGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAAACACGACGGG
** * *
23501498 AACGGCGGATCCTGTACCGCGAAGACACAAGGGAAAGATCTAAGCCGCGATGGTGGATCCAGTA-
1 AACGGCGGATCCAATACCACGAAGACACAAGGGAAAGATCTAAGCCGCGACGGTGGATCCAGTAC
* *
23501562 CAACGAAGACACCAGGGAAAGATCTAAGCCGCGACGGCGGATCCAGTACCACGAA
66 CAA-GAAGACACCAAGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAA
23501617 GACATGAAGG
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
129 3 0.03
130 107 0.97
ACGTcount: A:0.36, C:0.26, G:0.28, T:0.10
Consensus pattern (130 bp):
AACGGCGGATCCAATACCACGAAGACACAAGGGAAAGATCTAAGCCGCGACGGTGGATCCAGTAC
CAAGAAGACACCAAGGAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACGAAAACACGACGGG
Found at i:23501787 original size:98 final size:96
Alignment explanation
Indices: 23501498--23502132 Score: 732
Period size: 98 Copynumber: 6.5 Consensus size: 96
23501488 ACACGACGGG
* * * * * *
23501498 AACGGCGGATCCTGTACCGCGAAGACACAAGGGAAAGATCTAAGCCGCGATGGTGGATCCAGTAC
1 AACGGCGGATCCAGTACCACGAAGACACGAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTAC
* *
23501563 AACGAAGACACCAGGGAAAGATCTAAGCCGC
66 CACGAAGACACAAGGGAAAGATCTAAGCCGC
* * * * *
23501594 GACGGCGGATCCAGTACCACGAAGACATGAAGGAAAAGATCTAAGTCGCAACGGCGAATCCAGTA
1 AACGGCGGATCCAGTACCACGAAGACACG-AGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTA
*
23501659 CCACGAAGACACCAGGGAAAGATCTAAGCCGC
65 CCACGAAGACACAAGGGAAAGATCTAAGCCGC
* * * * * *
23501691 AACGGCGAATCCAGTACCACAAAAACACGATGGGAAAGATCTAAGACCACAACGGCAGATCTAGT
1 AACGGCGGATCCAGTACCACGAAGACACGA-GGGAAAGATCTAAG-CCGCAACGGCGGATCCAGT
* * *
23501756 ACCGCGACGACACAAGGGAAAGATCTAAGCCGT
64 ACCACGAAGACACAAGGGAAAGATCTAAGCCGC
* * * * *
23501789 GACGGCGGATCCAGTACCGCGAAGACACCAGGGAAAGATCTAAGCCGCAATGGCGGATCCATTAC
1 AACGGCGGATCCAGTACCACGAAGACACGAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTAC
* * *
23501854 CACGAAAACATGACGGGAAAGATCTAAGACCGC
66 CACGAAGACA-CAAGGGAAAGATCTAAG-CCGC
* * * *
23501887 AACGGCGGATCCAGTACCGCGAAGACACAAGGGAAAAATCTAAGCCGCAACGGTGGATCCAGTAC
1 AACGGCGGATCCAGTACCACGAAGACACGAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTAC
* *
23501952 CACGAAGACACCAGGGAAATATCTAAGCCGC
66 CACGAAGACACAAGGGAAAGATCTAAGCCGC
* * * * * *
23501983 AATGGTGGATCCAGTACCACGAAAACAC-ATCGGGAAAGATCTAAGACCCCAATGACGGATCCAG
1 AACGGCGGATCCAGTACCACGAAGACACGA--GGGAAAGATCTAAG-CCGCAACGGCGGATCCAG
* *
23502047 TACCGCGAAGACACAAGGGAAAGATCTAAGTCGC
63 TACCACGAAGACACAAGGGAAAGATCTAAGCCGC
* * * * *
23502081 GACGGTGGATCCAGTACCACGAAGACACAGAGGGAAAGGTATAAGTCGCAAC
1 AACGGCGGATCCAGTACCACGAAGACAC-GAGGGAAAGATCTAAGCCGCAAC
23502133 CTTGTACCTC
Statistics
Matches: 453, Mismatches: 76, Indels: 19
0.83 0.14 0.03
Matches are distributed among these distances:
95 1 0.00
96 76 0.17
97 156 0.34
98 219 0.48
100 1 0.00
ACGTcount: A:0.37, C:0.25, G:0.27, T:0.11
Consensus pattern (96 bp):
AACGGCGGATCCAGTACCACGAAGACACGAGGGAAAGATCTAAGCCGCAACGGCGGATCCAGTAC
CACGAAGACACAAGGGAAAGATCTAAGCCGC
Found at i:23501805 original size:146 final size:146
Alignment explanation
Indices: 23501498--23502118 Score: 852
Period size: 146 Copynumber: 4.3 Consensus size: 146
23501488 ACACGACGGG
* * * * *
23501498 AACGGCGGATCCTGTACCGCGAAGACACAAGGGAAAGATCTAAGCCGCGATGGTGGATCCAGTAC
1 AACGGCGGATCCAGTACCACGAAGACACCAGGGAAAGATCTAAGCCGCAATGGCGGATCCAGTAC
* * * * * *
23501563 AACGAAGACACCA-GGGAAAGATCTAAG-CCGCGACGGCGGATCCAGTACCACGAAGACATGAAG
66 CACGAAAACACGATGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACA-CAAG
* *
23501626 GAAAAGATCTAAGTCGC
130 GGAAAGATCTAAGCCGC
* * *
23501643 AACGGCGAATCCAGTACCACGAAGACACCAGGGAAAGATCTAAGCCGCAACGGCGAATCCAGTAC
1 AACGGCGGATCCAGTACCACGAAGACACCAGGGAAAGATCTAAGCCGCAATGGCGGATCCAGTAC
* * * * *
23501708 CACAAAAACACGATGGGAAAGATCTAAGACCACAACGGCAGATCTAGTACCGCGACGACACAAGG
66 CACGAAAACACGATGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACACAAGG
*
23501773 GAAAGATCTAAGCCGT
131 GAAAGATCTAAGCCGC
* * *
23501789 GACGGCGGATCCAGTACCGCGAAGACACCAGGGAAAGATCTAAGCCGCAATGGCGGATCCATTAC
1 AACGGCGGATCCAGTACCACGAAGACACCAGGGAAAGATCTAAGCCGCAATGGCGGATCCAGTAC
* *
23501854 CACGAAAACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACACAAGG
66 CACGAAAACACGATGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACACAAGG
*
23501919 GAAAAATCTAAGCCGC
131 GAAAGATCTAAGCCGC
* * *
23501935 AACGGTGGATCCAGTACCACGAAGACACCAGGGAAATATCTAAGCCGCAATGGTGGATCCAGTAC
1 AACGGCGGATCCAGTACCACGAAGACACCAGGGAAAGATCTAAGCCGCAATGGCGGATCCAGTAC
* * *
23502000 CACGAAAACAC-ATCGGGAAAGATCTAAGACCCCAATGACGGATCCAGTACCGCGAAGACACAAG
66 CACGAAAACACGAT-GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACACAAG
*
23502064 GGAAAGATCTAAGTCGC
130 GGAAAGATCTAAGCCGC
* * *
23502081 GACGGTGGATCCAGTACCACGAAGACACAGAGGGAAAG
1 AACGGCGGATCCAGTACCACGAAGACAC-CAGGGAAAG
23502119 GTATAAGTCG
Statistics
Matches: 419, Mismatches: 53, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
145 67 0.16
146 320 0.76
147 32 0.08
ACGTcount: A:0.37, C:0.25, G:0.27, T:0.11
Consensus pattern (146 bp):
AACGGCGGATCCAGTACCACGAAGACACCAGGGAAAGATCTAAGCCGCAATGGCGGATCCAGTAC
CACGAAAACACGATGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACACAAGG
GAAAGATCTAAGCCGC
Found at i:23502498 original size:101 final size:101
Alignment explanation
Indices: 23502323--23502518 Score: 288
Period size: 101 Copynumber: 1.9 Consensus size: 101
23502313 AACTACAATG
* * *
23502323 GCAAGTCTTTATCTCTCTGAAGTTGCAGTAAGGGCAAGATGAAGCTTTAACGTCAATTCCTATCC
1 GCAAGTCTTTATCTCTCTGAAGTTGCAGTAAGGGCAAGATGAAGCTTCAACATCAAATCCTATCC
* *
23502388 TCTTGAAGTTGCAGTAAAGTTGGATTAAAAATAATA
66 TCTTGAAGTTACAGCAAAGTTGGATTAAAAATAATA
*
23502424 GCAAGTCTTTATCTCTCTGAAGTTGTAGTAAGAGG-AAGATGAAGCTTCAACATCAAATCCTAT-
1 GCAAGTCTTTATCTCTCTGAAGTTGCAGTAAG-GGCAAGATGAAGCTTCAACATCAAATCCTATC
* *
23502487 CTTTCTGAAGTTACAGCGAAGTTGGATTAAAA
65 CTCT-TGAAGTTACAGCAAAGTTGGATTAAAA
23502519 CTACAGTAGC
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
100 3 0.04
101 80 0.94
102 2 0.02
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (101 bp):
GCAAGTCTTTATCTCTCTGAAGTTGCAGTAAGGGCAAGATGAAGCTTCAACATCAAATCCTATCC
TCTTGAAGTTACAGCAAAGTTGGATTAAAAATAATA
Found at i:23502685 original size:39 final size:39
Alignment explanation
Indices: 23502642--23502768 Score: 111
Period size: 39 Copynumber: 3.3 Consensus size: 39
23502632 ACCCTTAGCC
*
23502642 TGGGGTAGATCATCGTCAACCAATATCTTACCCCGAGCT
1 TGGGGCAGATCATCGTCAACCAATATCTTACCCCGAGCT
*
23502681 TGGGGCAGAT--T-G--AAGCCATTTGATCTTTTACCCCGAGCT
1 TGGGGCAGATCATCGTCAA-CCA-AT-ATC--TTACCCCGAGCT
* * * * *
23502720 TGGGGCAGATCACCATCAACCAGTTTCCTACCCCGAGCT
1 TGGGGCAGATCATCGTCAACCAATATCTTACCCCGAGCT
23502759 TGGGGCAGAT
1 TGGGGCAGAT
23502769 TGTAGTTATC
Statistics
Matches: 71, Mismatches: 7, Indels: 20
0.72 0.07 0.20
Matches are distributed among these distances:
34 2 0.03
35 3 0.04
36 2 0.03
37 4 0.06
39 52 0.73
41 2 0.03
42 1 0.01
43 3 0.04
44 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
TGGGGCAGATCATCGTCAACCAATATCTTACCCCGAGCT
Found at i:23502709 original size:79 final size:78
Alignment explanation
Indices: 23502573--23502770 Score: 243
Period size: 78 Copynumber: 2.5 Consensus size: 78
23502563 AGTGAAGTTA
* * * * * * **
23502573 CATCATCAACTAATCTCTTACCCTGAGCTTGGGGCAAAATGCAGCCATTTGAGCTTTTTACCCTT
1 CATCATCAACCAATATCTTACCCCGAGCTTGGGGCAGATTGAAGCCATTTGAGC-TTTTACCCCG
*
23502638 AGCCTGGGGTAGAT
65 AGCCTGGGGCAGAT
* *
23502652 CATCGTCAACCAATATCTTACCCCGAGCTTGGGGCAGATTGAAGCCATTTGATCTTTTACCCCGA
1 CATCATCAACCAATATCTTACCCCGAGCTTGGGGCAGATTGAAGCCATTTGAGCTTTTACCCCGA
*
23502717 GCTTGGGGCAGAT
66 GCCTGGGGCAGAT
* * * *
23502730 CACCATCAACCAGTTTCCTACCCCGAGCTTGGGGCAGATTG
1 CATCATCAACCAATATCTTACCCCGAGCTTGGGGCAGATTG
23502771 TAGTTATCCA
Statistics
Matches: 102, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
78 56 0.55
79 46 0.45
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (78 bp):
CATCATCAACCAATATCTTACCCCGAGCTTGGGGCAGATTGAAGCCATTTGAGCTTTTACCCCGA
GCCTGGGGCAGAT
Found at i:23503206 original size:34 final size:32
Alignment explanation
Indices: 23503168--23503242 Score: 78
Period size: 34 Copynumber: 2.2 Consensus size: 32
23503158 TAATTGAGTC
*
23503168 CAAATTTTAAATAAGTTTGAATTTATTTTAAATT
1 CAAATTTT--ATAAGTTTGAATTTACTTTAAATT
* *
23503202 CAAATTCATTTTGAGTTTGAATTTACTTTAAATT
1 CAAATT--TTATAAGTTTGAATTTACTTTAAATT
*
23503236 GAAATTT
1 CAAATTT
23503243 ATTTTAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
32 1 0.03
34 32 0.91
36 2 0.06
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.49
Consensus pattern (32 bp):
CAAATTTTATAAGTTTGAATTTACTTTAAATT
Found at i:23503207 original size:17 final size:17
Alignment explanation
Indices: 23503187--23503257 Score: 70
Period size: 17 Copynumber: 4.2 Consensus size: 17
23503177 AATAAGTTTG
*
23503187 AATTTATTTTAAATTCA
1 AATTTATTTTAAATTAA
* * * **
23503204 AATTCATTTTGAGTTTG
1 AATTTATTTTAAATTAA
* *
23503221 AATTTACTTTAAATTGA
1 AATTTATTTTAAATTAA
23503238 AATTTATTTTAAATTAA
1 AATTTATTTTAAATTAA
23503255 AAT
1 AAT
23503258 AAAATTTAAA
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (17 bp):
AATTTATTTTAAATTAA
Found at i:23503247 original size:34 final size:34
Alignment explanation
Indices: 23503181--23503247 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
23503171 ATTTTAAATA
*
23503181 AGTTTGAATTTATTTTAAATTCAAATTCATTTTG
1 AGTTTGAATTTACTTTAAATTCAAATTCATTTTG
* *
23503215 AGTTTGAATTTACTTTAAATTGAAATTTATTTT
1 AGTTTGAATTTACTTTAAATTCAAATTCATTTT
23503248 AAATTAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (34 bp):
AGTTTGAATTTACTTTAAATTCAAATTCATTTTG
Found at i:23505015 original size:58 final size:57
Alignment explanation
Indices: 23504943--23505119 Score: 178
Period size: 58 Copynumber: 3.0 Consensus size: 57
23504933 TAAACTTTCT
* *
23504943 AAAATTTCATTTTTGACCTAGAAGTTTTTGAAAATTACCATTTTACCC-CGAATGTCCA
1 AAAATTCCATTTTTGACCCA-AA-TTTTTGAAAATTACCATTTTACCCTCGAATGTCCA
* *** *
23505001 AAAATTCCATTTTTGACCCCTAATTTCCAAAAATTACCATTTTACCCTCGAATGTCTA
1 AAAATTCCATTTTTGA-CCCAAATTTTTGAAAATTACCATTTTACCCTCGAATGTCCA
* * * * *
23505059 AAAAATCTATTTTTAACCCCAAAACTTTTGAAAATCACCATTTTACCCTC-AGATGTCCA
1 AAAATTCCATTTTTGA-CCC-AAATTTTTGAAAATTACCATTTTACCCTCGA-ATGTCCA
23505118 AA
1 AA
23505120 TTTTCAAAAA
Statistics
Matches: 98, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
57 21 0.21
58 44 0.45
59 33 0.34
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.35
Consensus pattern (57 bp):
AAAATTCCATTTTTGACCCAAATTTTTGAAAATTACCATTTTACCCTCGAATGTCCA
Found at i:23505029 original size:29 final size:29
Alignment explanation
Indices: 23504973--23505062 Score: 114
Period size: 29 Copynumber: 3.1 Consensus size: 29
23504963 GAAGTTTTTG
23504973 AAAATTACCA-TTTTACCCCGAATGTCCA
1 AAAATTACCATTTTTACCCCGAATGTCCA
* *
23505001 AAAATT-CCATTTTTGACCCCTAATTTCCA
1 AAAATTACCATTTTT-ACCCCGAATGTCCA
*
23505030 AAAATTACCA-TTTTACCCTCGAATGTCTA
1 AAAATTACCATTTTTACCC-CGAATGTCCA
23505059 AAAA
1 AAAA
23505063 ATCTATTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
27 3 0.06
28 14 0.26
29 33 0.62
30 3 0.06
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.32
Consensus pattern (29 bp):
AAAATTACCATTTTTACCCCGAATGTCCA
Found at i:23505072 original size:29 final size:28
Alignment explanation
Indices: 23504973--23505078 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 28
23504963 GAAGTTTTTG
23504973 AAAATTACCA-TTTTACCCCGAATGTCCA
1 AAAATT-CCATTTTTACCCCGAATGTCCA
* *
23505001 AAAATTCCATTTTTGACCCCTAATTTCCA
1 AAAATTCCATTTTT-ACCCCGAATGTCCA
*
23505030 AAAATTACCA-TTTTACCCTCGAATGTCTA
1 AAAATT-CCATTTTTACCC-CGAATGTCCA
* *
23505059 AAAAATCTATTTTTAACCCC
1 AAAATTCCATTTTT-ACCCC
23505079 AAAACTTTTG
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
27 3 0.05
28 16 0.25
29 39 0.60
30 7 0.11
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.34
Consensus pattern (28 bp):
AAAATTCCATTTTTACCCCGAATGTCCA
Found at i:23505115 original size:59 final size:57
Alignment explanation
Indices: 23504968--23505119 Score: 182
Period size: 59 Copynumber: 2.6 Consensus size: 57
23504958 ACCTAGAAGT
* * *
23504968 TTTTGAAAATTACCATTTTACCC-CGAATGTCCAAAAATTCCATTTTTGACCCCTAA
1 TTTTGAAAATTACCATTTTACCCTCGAATGTCCAAAAAATCCATTTTTAACCCCAAA
** * *
23505024 TTTCCAAAAATTACCATTTTACCCTCGAATGTCTAAAAAATCTATTTTTAACCCCAAAA
1 TTT-TGAAAATTACCATTTTACCCTCGAATGTCCAAAAAATCCATTTTTAACCCC-AAA
*
23505083 CTTTTGAAAATCACCATTTTACCCTC-AGATGTCCAAA
1 -TTTTGAAAATTACCATTTTACCCTCGA-ATGTCCAAA
23505120 TTTTCAAAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
56 3 0.04
57 18 0.22
58 27 0.34
59 29 0.36
60 3 0.04
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (57 bp):
TTTTGAAAATTACCATTTTACCCTCGAATGTCCAAAAAATCCATTTTTAACCCCAAA
Found at i:23505189 original size:96 final size:96
Alignment explanation
Indices: 23505022--23505215 Score: 228
Period size: 96 Copynumber: 2.0 Consensus size: 96
23505012 TTTGACCCCT
* * * *
23505022 AATTTCCAAAAATTACCATTTTACCCTCGAATGTCTAAAAAATCTATTTTTAACCCCAAAACTTT
1 AATTTCCAAAAATGACCATTTTACCCTCGAACGTCTAAAAAATCCATTTTTAACCCCAAAACTTC
** *
23505087 TGAAAATCACCATTTTACCCTC-AGATGTCCA
66 CAAAAATCACCATTTTACCCCCAAG-TGTCCA
* * * * * * *
23505118 AATTTTCAAAAATGACCATTTTACCCTCGAGCGTCTAAAAATTCCATTTTTGACCTCGAACCTTC
1 AATTTCCAAAAATGACCATTTTACCCTCGAACGTCTAAAAAATCCATTTTTAACCCCAAAACTTC
* *
23505183 CAAAAATTACCATTTTGCCCCCAAGTGTCCA
66 CAAAAATCACCATTTTACCCCCAAGTGTCCA
23505214 AA
1 AA
23505216 ACTACCGTTT
Statistics
Matches: 81, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
96 79 0.98
97 2 0.02
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (96 bp):
AATTTCCAAAAATGACCATTTTACCCTCGAACGTCTAAAAAATCCATTTTTAACCCCAAAACTTC
CAAAAATCACCATTTTACCCCCAAGTGTCCA
Found at i:23505199 original size:30 final size:30
Alignment explanation
Indices: 23505124--23505199 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 30
23505114 TCCAAATTTT
* *
23505124 CAAAAATGACCATTTT-ACCCTCGAGCGTC
1 CAAAAATTACCATTTTGACCCTCGACCGTC
* *
23505153 TAAAAATT-CCATTTTTGA-CCTCGAACCTTC
1 CAAAAATTACCA-TTTTGACCCTCG-ACCGTC
23505183 CAAAAATTACCATTTTG
1 CAAAAATTACCATTTTG
23505200 CCCCCAAGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
28 3 0.08
29 15 0.39
30 17 0.45
31 3 0.08
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.32
Consensus pattern (30 bp):
CAAAAATTACCATTTTGACCCTCGACCGTC
Found at i:23514416 original size:28 final size:28
Alignment explanation
Indices: 23514385--23514516 Score: 79
Period size: 29 Copynumber: 4.6 Consensus size: 28
23514375 GCAGACGGGA
*
23514385 TAAAATGTAATTTTTGGATACTCGGGGG
1 TAAAATGTAATTTTTGGACACTCGGGGG
* *
23514413 TAAAACGATAA-TTTTGGACACTTCGAGGG
1 TAAAATG-TAATTTTTGGACAC-TCGGGGG
* *** *** *
23514442 CAAAATAGTAATTTTCATAGGTTC-GAGG
1 TAAAAT-GTAATTTTTGGACACTCGGGGG
* *
23514470 TCAAAATGGAATTTTTAGGACATTCGGGGG
1 T-AAAATGTAATTTTT-GGACACTCGGGGG
23514500 TAAAATGGTAATTTTTG
1 TAAAAT-GTAATTTTTG
23514517 TAAGTTCGGG
Statistics
Matches: 74, Mismatches: 22, Indels: 15
0.67 0.20 0.14
Matches are distributed among these distances:
28 24 0.32
29 33 0.45
30 17 0.23
ACGTcount: A:0.33, C:0.09, G:0.25, T:0.33
Consensus pattern (28 bp):
TAAAATGTAATTTTTGGACACTCGGGGG
Found at i:23514495 original size:29 final size:31
Alignment explanation
Indices: 23514462--23514848 Score: 228
Period size: 29 Copynumber: 13.2 Consensus size: 31
23514452 ATTTTCATAG
*
23514462 GTTCGA-GGTCAAAATGG-AATTTTTAGGACA
1 GTTCGAGGGT-AAAATGGTAATTTTTAGGAAA
* *
23514492 -TTCGGGGGTAAAATGGTAATTTTT--GTAA
1 GTTCGAGGGTAAAATGGTAATTTTTAGGAAA
*
23514520 GTTCG-GGGTCAAAAATGG-AATTTTTTGGAAA
1 GTTCGAGGGT--AAAATGGTAATTTTTAGGAAA
**
23514551 -TTTAAGGGTAAAATGGTAA-TTTTA-GAAA
1 GTTCGAGGGTAAAATGGTAATTTTTAGGAAA
* *
23514579 GTTTGAGGGTTAAAAT-GCAATTTTT-GGAAA
1 GTTCGAGGG-TAAAATGGTAATTTTTAGGAAA
23514609 -TTCGAGGGTAAAATGGTAATTTTTA-GAAA
1 GTTCGAGGGTAAAATGGTAATTTTTAGGAAA
*
23514638 GTTTGAGGGTCAAAAATGG-AATTTTTAGG-AA
1 GTTCGAGGGT--AAAATGGTAATTTTTAGGAAA
* *
23514669 TTTAG-GGGTAAAATGGTAATTTTT-GG-AA
1 GTTCGAGGGTAAAATGGTAATTTTTAGGAAA
*
23514697 GTT-TAGGGGTAAAAAT-GTAATTTTT-GG-AA
1 GTTCGA-GGGT-AAAATGGTAATTTTTAGGAAA
* * * *
23514726 GTT-TAGGGGCAAAATTGCAATTTTT-GTG-AA
1 GTTCGA-GGGTAAAATGGTAATTTTTAG-GAAA
**
23514756 GTTCGAGGCAAAAAT-GTAATTTTT-GTG-AA
1 GTTCGAGGGTAAAATGGTAATTTTTAG-GAAA
**
23514785 GTTCGAGGCAAAAAT-GTAATTTTTA-GAAA
1 GTTCGAGGGTAAAATGGTAATTTTTAGGAAA
* * *
23514814 GTTTGAGGGTCAAAAT-ATAATTTTT-GGGAA
1 GTTCGAGGGT-AAAATGGTAATTTTTAGGAAA
23514844 GTTCG
1 GTTCG
23514849 GAGACCTTTT
Statistics
Matches: 299, Mismatches: 28, Indels: 60
0.77 0.07 0.16
Matches are distributed among these distances:
28 35 0.12
29 150 0.50
30 85 0.28
31 21 0.07
32 8 0.03
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.35
Consensus pattern (31 bp):
GTTCGAGGGTAAAATGGTAATTTTTAGGAAA
Found at i:23514505 original size:58 final size:60
Alignment explanation
Indices: 23514424--23514840 Score: 348
Period size: 58 Copynumber: 7.1 Consensus size: 60
23514414 AAAACGATAA
* * * * * *
23514424 TTTTGGACACTTCGAGGGCAAAATAGTAATTTTCA-TAGGTTCGA-GGTC-AAAATGGAAT
1 TTTTGGA-AATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTCGAGGGTCAAAAATGGAAT
* * *
23514482 TTTTAGGACATTCGGGGGTAAAATGGTAATTTTT-GTAAGTTCG-GGGTCAAAAATGGAATT
1 TTTT-GGAAATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTCGAGGGTCAAAAATGGAA-T
** * * *
23514542 TTTTGGAAATTTAAGGGTAAAATGGTAA-TTTTAGAAAGTTTGAGGGT-TAAAATGCAAT
1 TTTTGGAAATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTCGAGGGTCAAAAATGGAAT
*
23514600 TTTTGGAAATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTTGAGGGTCAAAAATGGAAT
1 TTTTGGAAATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTCGAGGGTCAAAAATGGAAT
* * * * *
23514660 TTTTAGGAATTTAG-GGGTAAAATGGTAATTTTT-GGAAGTT-TAGGGGT-AAAAATGTAAT
1 TTTT-GGAAATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTCGA-GGGTCAAAAATGGAAT
* * * * * * *
23514718 TTTTGGAAGTT-TAGGGGCAAAATTGCAATTTTT-GTGAAGTTCGA-GG-CAAAAATGTAAT
1 TTTTGGAAATTCGA-GGGTAAAATGGTAATTTTTAG-AAAGTTCGAGGGTCAAAAATGGAAT
* ** *
23514776 TTTTGTGAAGTTCGAGGCAAAAAT-GTAATTTTTAGAAAGTTTGAGGGTCAAAATAT--AAT
1 TTTTG-GAAATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTCGAGGGTCAAAA-ATGGAAT
23514835 TTTTGG
1 TTTTGG
23514841 GAAGTTCGGA
Statistics
Matches: 301, Mismatches: 36, Indels: 44
0.79 0.09 0.12
Matches are distributed among these distances:
57 6 0.02
58 132 0.44
59 106 0.35
60 48 0.16
61 9 0.03
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.35
Consensus pattern (60 bp):
TTTTGGAAATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTCGAGGGTCAAAAATGGAAT
Found at i:23514845 original size:59 final size:59
Alignment explanation
Indices: 23514468--23514848 Score: 291
Period size: 59 Copynumber: 6.5 Consensus size: 59
23514458 ATAGGTTCGA
* * ** * *
23514468 GGTCAAAATGGAATTTTTAGGACA-TTCGGGGGTAAAATGGTAATTTTT-GTAAGTTCG-G
1 GGTCAAAATGTAATTTTT-GGA-AGTTCGAGGCAAAAATGGTAATTTTTAGAAAGTTTGAG
* * ** **
23514526 GGTCAAAAATGGAATTTTTTGGAAATTTAAGGGTAAAATGGTAA-TTTTAGAAAGTTTGAG
1 GGTC-AAAATGTAA-TTTTTGGAAGTTCGAGGCAAAAATGGTAATTTTTAGAAAGTTTGAG
* * * **
23514586 GGTTAAAATGCAATTTTTGGAAATTCGAGGGTAAAATGGTAATTTTTAGAAAGTTTGAG
1 GGTCAAAATGTAATTTTTGGAAGTTCGAGGCAAAAATGGTAATTTTTAGAAAGTTTGAG
* * * ** *
23514645 GGTCAAAAATGGAATTTTTAGGAATTTAG-GGGTAAAATGGTAATTTTT-GGAAGTTT-AGG
1 GGTC-AAAATGTAATTTTT-GGAAGTTCGAGGCAAAAATGGTAATTTTTAGAAAGTTTGA-G
* * * * * * *
23514704 GGTAAAAATGTAATTTTTGGAAGTTTAGGGGC-AAAATTGCAATTTTT-GTGAAGTTCGA-
1 GGTCAAAATGTAATTTTTGGAAG-TTCGAGGCAAAAATGGTAATTTTTAG-AAAGTTTGAG
23514762 GG-CAAAAATGTAATTTTTGTGAAGTTCGAGGCAAAAAT-GTAATTTTTAGAAAGTTTGAG
1 GGTC-AAAATGTAATTTTTG-GAAGTTCGAGGCAAAAATGGTAATTTTTAGAAAGTTTGAG
*
23514821 GGTCAAAATATAATTTTTGGGAAGTTCG
1 GGTCAAAATGTAATTTTT-GGAAGTTCG
23514849 GAGACCTTTT
Statistics
Matches: 275, Mismatches: 28, Indels: 39
0.80 0.08 0.11
Matches are distributed among these distances:
57 4 0.01
58 106 0.39
59 114 0.41
60 44 0.16
61 7 0.03
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.35
Consensus pattern (59 bp):
GGTCAAAATGTAATTTTTGGAAGTTCGAGGCAAAAATGGTAATTTTTAGAAAGTTTGAG
Found at i:23516546 original size:6 final size:6
Alignment explanation
Indices: 23516537--23516611 Score: 75
Period size: 6 Copynumber: 13.0 Consensus size: 6
23516527 TAGAATAATT
** *
23516537 TTTAAA TTTAAA AATAAA TTTAAA CTTAAA -TTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
** *
23516584 -ACAAA TTTAAA TTTAAA -ATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
23516612 AAAATGAGTT
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
5 12 0.22
6 43 0.78
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (6 bp):
TTTAAA
Found at i:23516573 original size:17 final size:17
Alignment explanation
Indices: 23516519--23516611 Score: 123
Period size: 17 Copynumber: 5.4 Consensus size: 17
23516509 ATTTTATTCT
* *
23516519 TTTAAATTTAGAATAATT
1 TTTAAATTTAAAATAA-A
23516537 TTTAAATTTAAAAATAAA
1 TTTAAATTT-AAAATAAA
* *
23516555 TTTAAACTTAAATTAAA
1 TTTAAATTTAAAATAAA
*
23516572 TTTAAATTTAAAACAAA
1 TTTAAATTTAAAATAAA
23516589 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
23516606 TTTAAA
1 TTTAAA
23516612 AAAATGAGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
17 43 0.65
18 17 0.26
19 6 0.09
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:23516576 original size:11 final size:11
Alignment explanation
Indices: 23516538--23516596 Score: 57
Period size: 11 Copynumber: 5.2 Consensus size: 11
23516528 AGAATAATTT
23516538 TTAAATTTAAAA
1 TTAAATTT-AAA
*
23516550 ATAAATTTAAA
1 TTAAATTTAAA
23516561 CTTAAA-TTAAA
1 -TTAAATTTAAA
23516572 TTTAAATTTAAA
1 -TTAAATTTAAA
**
23516584 ACAAATTTAAA
1 TTAAATTTAAA
23516595 TT
1 TT
23516597 TAAAATAAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
11 22 0.58
12 16 0.42
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:23516577 original size:23 final size:23
Alignment explanation
Indices: 23516540--23516600 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
23516530 AATAATTTTT
**
23516540 AAATTTAAAAATAAATTT-AAAC
1 AAATTTAAATTTAAATTTAAAAC
23516562 TTAAA-TTAAATTTAAATTTAAAAC
1 --AAATTTAAATTTAAATTTAAAAC
23516586 AAATTTAAATTTAAA
1 AAATTTAAATTTAAA
23516601 ATAAATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 3 0.09
23 23 0.70
24 7 0.21
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (23 bp):
AAATTTAAATTTAAATTTAAAAC
Found at i:23516605 original size:11 final size:11
Alignment explanation
Indices: 23516539--23516616 Score: 53
Period size: 11 Copynumber: 7.5 Consensus size: 11
23516529 GAATAATTTT
23516539 TAAATTTAAAAA
1 TAAATTT-AAAA
*
23516551 TAAATTTAAACT
1 TAAATTTAAA-A
*
23516563 TAAA-TTAAATT
1 TAAATTTAAA-A
23516574 TAAATTTAAAA
1 TAAATTTAAAA
*
23516585 CAAA-TT----
1 TAAATTTAAAA
23516591 TAAATTTAAAA
1 TAAATTTAAAA
23516602 TAAATTTAAAA
1 TAAATTTAAAA
23516613 -AAAT
1 TAAAT
23516617 GAGTTTAGTT
Statistics
Matches: 54, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
6 3 0.06
7 2 0.04
10 6 0.11
11 27 0.50
12 16 0.30
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (11 bp):
TAAATTTAAAA
Found at i:23519152 original size:18 final size:18
Alignment explanation
Indices: 23519125--23519163 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
23519115 AGTAGCAGGA
23519125 GAAGTGAAG-AAGAAAAG
1 GAAGTGAAGAAAGAAAAG
*
23519142 GAAGATGAAGAAAGAAAGG
1 GAAG-TGAAGAAAGAAAAG
23519161 GAA
1 GAA
23519164 AGAAGGATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 5 0.26
19 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.36, T:0.05
Consensus pattern (18 bp):
GAAGTGAAGAAAGAAAAG
Found at i:23523109 original size:14 final size:14
Alignment explanation
Indices: 23523090--23523116 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23523080 TTTATTTCAA
23523090 AATTTTAAATTAAT
1 AATTTTAAATTAAT
23523104 AATTTTAAATTAA
1 AATTTTAAATTAA
23523117 ATATTGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATTTTAAATTAAT
Found at i:23526740 original size:3 final size:3
Alignment explanation
Indices: 23526732--23526757 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
23526722 CTTCAATCTT
23526732 CAC CAC CAC CAC CAC CAC CAC CAC CA
1 CAC CAC CAC CAC CAC CAC CAC CAC CA
23526758 TGTGTTTGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.65, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:23532847 original size:29 final size:29
Alignment explanation
Indices: 23532757--23532901 Score: 168
Period size: 29 Copynumber: 4.9 Consensus size: 29
23532747 ATTTGAGGCC
* * *
23532757 AAAATGTAATTTTGGGAAAATTTAGAGATC
1 AAAATGTAATTTT-GGAAAGTTTAGGGATT
* *
23532787 AAAATGTGATTTTAGAAATGTTTAAGGG-TT
1 AAAATGTAATTTTGGAAA-GTTT-AGGGATT
*
23532817 AAAATGTAAATTTGGAAAGTTTAGGGATT
1 AAAATGTAATTTTGGAAAGTTTAGGGATT
*
23532846 AAAATGTAATTTTGGAAAAGTTTA-TGATT
1 AAAATGTAATTTTGG-AAAGTTTAGGGATT
23532875 AAAATGTAATTTTGGAGAAGTTTAGGG
1 AAAATGTAATTTTGGA-AAGTTTAGGG
23532902 GTCAAAATAA
Statistics
Matches: 98, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
28 5 0.05
29 50 0.51
30 40 0.41
31 3 0.03
ACGTcount: A:0.40, C:0.01, G:0.23, T:0.37
Consensus pattern (29 bp):
AAAATGTAATTTTGGAAAGTTTAGGGATT
Found at i:23532850 original size:59 final size:58
Alignment explanation
Indices: 23532757--23532927 Score: 198
Period size: 59 Copynumber: 2.9 Consensus size: 58
23532747 ATTTGAGGCC
* * * * *
23532757 AAAATGTAATTTTGGGAAAATTTAGAGATCAAAATGTGATTTTAGAAATGTTTAAGGGTT
1 AAAATGTAATTTT-GGAAAGTTTAGGGATCAAAATGTAATTTTAGAAAAGTTT-AGGATT
* * * *
23532817 AAAATGTAAATTTGGAAAGTTTAGGGATTAAAATGTAATTTTGGAAAAGTTTATGATT
1 AAAATGTAATTTTGGAAAGTTTAGGGATCAAAATGTAATTTTAGAAAAGTTTAGGATT
* ** *
23532875 AAAATGTAATTTTGGAGAAGTTTAGGGGTCAAAATAAAATTTTTGAAAAGTTT
1 AAAATGTAATTTTGGA-AAGTTTAGGGATCAAAATGTAATTTTAGAAAAGTTT
23532928 GGAGGGCCTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
58 19 0.20
59 64 0.67
60 12 0.13
ACGTcount: A:0.41, C:0.01, G:0.21, T:0.37
Consensus pattern (58 bp):
AAAATGTAATTTTGGAAAGTTTAGGGATCAAAATGTAATTTTAGAAAAGTTTAGGATT
Found at i:23532916 original size:30 final size:30
Alignment explanation
Indices: 23532757--23532927 Score: 179
Period size: 30 Copynumber: 5.8 Consensus size: 30
23532747 ATTTGAGGCC
* *
23532757 AAAATGTAATTTTGGGAAAA-TTTAGAGATC
1 AAAATGTAATTTT-GGAAAAGTTTAGGGATT
* * *
23532787 AAAATGTGATTTTAGAAATGTTTAAGGG-TT
1 AAAATGTAATTTTGGAAAAGTTT-AGGGATT
*
23532817 AAAATGTAAATTTGG-AAAGTTTAGGGATT
1 AAAATGTAATTTTGGAAAAGTTTAGGGATT
*
23532846 AAAATGTAATTTTGGAAAAGTTTA-TGATT
1 AAAATGTAATTTTGGAAAAGTTTAGGGATT
* * *
23532875 AAAATGTAATTTTGGAGAAGTTTAGGGGTC
1 AAAATGTAATTTTGGAAAAGTTTAGGGATT
** *
23532905 AAAATAAAATTTTTGAAAAGTTT
1 AAAATGTAATTTTGGAAAAGTTT
23532928 GGAGGGCCTT
Statistics
Matches: 117, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
28 4 0.03
29 53 0.45
30 57 0.49
31 3 0.03
ACGTcount: A:0.41, C:0.01, G:0.21, T:0.37
Consensus pattern (30 bp):
AAAATGTAATTTTGGAAAAGTTTAGGGATT
Found at i:23534945 original size:48 final size:48
Alignment explanation
Indices: 23534888--23534995 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
23534878 TCTCTATTCA
*
23534888 CATCAGGAAGATGACCG-TCTCATTGATTTAATCCACTTATCTGTATCT
1 CATCAGGAAGATGACCGCT-TCATTGATTTAACCCACTTATCTGTATCT
* * * * * *
23534936 CATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTTTATCT
1 CATCAGGAAGATGACCGCTTCATTGATTTAACCCACTTATCTGTATCT
23534984 CATCAGGAAGAT
1 CATCAGGAAGAT
23534996 AGGGTTTGAA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 51 0.98
49 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (48 bp):
CATCAGGAAGATGACCGCTTCATTGATTTAACCCACTTATCTGTATCT
Found at i:23535039 original size:170 final size:169
Alignment explanation
Indices: 23534752--23535117 Score: 520
Period size: 170 Copynumber: 2.2 Consensus size: 169
23534742 TCTTAGTCTA
* *
23534752 ACTTCTCTGTATCTTATCAGGAAGATGAACACTTTATTGCTTTGACCTACTTCTTTGTATCTCAT
1 ACTTCTCTGTATCTCATCAGGAAGATGAACACTTTATTGCTTTGACCCACTTCTTTGTATCTCAT
* * *
23534817 CAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTTGTTTCATTGATTTGGTCTACTTCTC
66 CAGGAAGATAGGGTTTGAAGTCTCATTCGTATTAAGCTTCGTTTCATTGATTTGGTCTACTT-TC
*
23534882 TATTCACATCAGGAAGATGACCG-TCTCATTGATTTAATCC
130 TATTCACATCAGGAAGATGACCGCT-TCATTGATTTAACCC
* * *
23534922 ACTTATCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTT-TATCTCA
1 ACTTCTCTGTATCTCATCAGGAAGATGAACACTTTATTGCTTTGACCCACTTCT-TTGTATCTCA
*
23534986 TCAGGAAGATAGGGTTTGAAGTCTCATTCGTATTAAGCTTCGTTTCATTGATTTGGTCTACTTTT
65 TCAGGAAGATAGGGTTTGAAGTCTCATTCGTATTAAGCTTCGTTTCATTGATTTGGTCTACTTTC
* ** * * *
23535051 TGTTCTTATCAGGAAGATGACCGCTTTATTGCTTTGACCC
130 TATTCACATCAGGAAGATGACCGCTTCATTGATTTAACCC
* * *
23535091 ACTTCTTTGTACCTCATTAGGAAGATG
1 ACTTCTCTGTATCTCATCAGGAAGATG
23535118 GGATTTGAAG
Statistics
Matches: 174, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
169 55 0.32
170 117 0.67
171 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (169 bp):
ACTTCTCTGTATCTCATCAGGAAGATGAACACTTTATTGCTTTGACCCACTTCTTTGTATCTCAT
CAGGAAGATAGGGTTTGAAGTCTCATTCGTATTAAGCTTCGTTTCATTGATTTGGTCTACTTTCT
ATTCACATCAGGAAGATGACCGCTTCATTGATTTAACCC
Found at i:23535151 original size:121 final size:122
Alignment explanation
Indices: 23534907--23535236 Score: 432
Period size: 121 Copynumber: 2.7 Consensus size: 122
23534897 GATGACCGTC
* * * *
23534907 TCATTGATTTAATCCACTTATCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCAC
1 TCATTGATTTAGTCTACTTCTCTGT-TCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCAC
*
23534972 TTCTCTTTATCTCATCAGGAAGATAGGGTTTGAAGTCTCATTCGTATTAAGCTTCGTT
65 TTCTCTTTACCTCATCAGGAAGATAGGGTTTGAAGTCTCATTCGTATTAAGCTTCGTT
* * *
23535030 TCATTGATTTGGTCTACTT-TTTGTTCTTATCAGGAAGATGACCGCTTTATTGCTTTGACCCACT
1 TCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACT
* * *
23535094 TCT-TTGTACCTCATTAGGAAGAT-GGGATTTGAAGTCTCATTTGTATTGAGCTTCGTT
66 TCTCTT-TACCTCATCAGGAAGATAGGG-TTTGAAGTCTCATTCGTATTAAGCTTCGTT
* * * * * *
23535151 TCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACT
1 TCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACT
* * *
23535216 TCTCTGTATCTCATCAAGAAG
66 TCTCTTTACCTCATCAGGAAG
23535237 GCGGATTTGG
Statistics
Matches: 180, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
120 5 0.03
121 102 0.57
122 56 0.31
123 17 0.09
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (122 bp):
TCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACT
TCTCTTTACCTCATCAGGAAGATAGGGTTTGAAGTCTCATTCGTATTAAGCTTCGTT
Found at i:23535244 original size:37 final size:37
Alignment explanation
Indices: 23535203--23535273 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
23535193 CCACCTCATT
*
23535203 GATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCG
1 GATTTAATCCACTTCTCTATATCTCATCAAGAAGGCG
** *
23535240 GATTTGGTCCACTTCTCTATATCTCATCAGGAAG
1 GATTTAATCCACTTCTCTATATCTCATCAAGAAG
23535274 ATGGGGTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (37 bp):
GATTTAATCCACTTCTCTATATCTCATCAAGAAGGCG
Found at i:23535378 original size:159 final size:159
Alignment explanation
Indices: 23535089--23535395 Score: 470
Period size: 159 Copynumber: 1.9 Consensus size: 159
23535079 TTGCTTTGAC
* * * **
23535089 CCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAGTCTCATTTGTATTGAGCTTCGTTTCA
1 CCACTTCTCTATACCTCATCAGGAAGATGGGATTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * *
23535154 TTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCT
66 TTGATTTAGTCTACTTCTCTATTCTCATCAGAAAGATGACCACCTCATTGATTTAACCCACTTCT
23535219 CTGTATCTCATCAAGAAGGCGGATTTGGT
131 CTGTATCTCATCAAGAAGGCGGATTTGGT
* * *
23535248 CCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCA
1 CCACTTCTCTATACCTCATCAGGAAGATGGGATTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * * * *
23535313 TTGATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCT
66 TTGATTTAGTCTACTTCTCTATTCTCATCAGAAAGATGACCACCTCATTGATTTAACCCACTTCT
23535378 CTGTATCTCATCAAGAAG
131 CTGTATCTCATCAAGAAG
23535396 ATGGGGTTTG
Statistics
Matches: 132, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
159 132 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (159 bp):
CCACTTCTCTATACCTCATCAGGAAGATGGGATTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
TTGATTTAGTCTACTTCTCTATTCTCATCAGAAAGATGACCACCTCATTGATTTAACCCACTTCT
CTGTATCTCATCAAGAAGGCGGATTTGGT
Found at i:23535449 original size:281 final size:281
Alignment explanation
Indices: 23534747--23535556 Score: 1147
Period size: 281 Copynumber: 2.8 Consensus size: 281
23534737 TCATTTCTTA
* * *
23534747 GTCTAACTTCTCTGTATCTTATCAGGAAGATGAACACTTTATTGCTTTGACCTACTTCTTTGTAT
1 GTCT-ACTTCTCTGT-TCTTATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTAT
*
23534812 CTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTTGTTTCATTGATTTGGTCTAC
64 CTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTAC
* * * *
23534877 TTCTCTATTCACATCAGGAAGATGACCGTCTCATTGATTTAATCCACTTATCTGTATCTCATCAG
129 TTCTCTGTTCTCATCAGGAAGATGACCGCCTCATTGATTTAATCCACTTCTCTGTATCTCATCAG
* * * *
23534942 GAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTTTATCTCATCAGGAAGATAGGGTTTGAAG
194 GAAG--G--CG---GA-T--TTGGA-CCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAG
*
23535007 TCTCATTCGTATTAAGCTTCGTTTCATTGATTTG
248 TCTCATTCATATTAAGCTTCGTTTCATTGATTTG
* *
23535041 GTCTACTT-TTTGTTCTTATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCT
1 GTCTACTTCTCTGTTCTTATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCT
* * * *
23535105 CATTAGGAAGATGGGATTTGAAGTCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTT
66 CATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTT
* *
23535170 CTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGA
131 CTCTGTTCTCATCAGGAAGATGACCGCCTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGA
*
23535235 AGGCGGATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATT
196 AGGCGGATTTGGACCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATT
* *
23535300 GAGCTTTGTTTCATTGATTTG
261 AAGCTTCGTTTCATTGATTTG
* * * * *
23535321 GTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCT
1 GTCTACTTCTCTGTTCTTATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCT
* *
23535386 CATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTT
66 CATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTT
* *
23535451 CTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGA
131 CTCTGTTCTCATCAGGAAGATGACCGCCTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGA
* * * * *
23535516 ATGTGGATTTGGACCACTTCTTTGT-TCTCATTAGGAAGATG
196 AGGCGGATTTGGACCACTTCTCTATATCTCATCAGGAAGATG
23535557 ATCGTTTTAT
Statistics
Matches: 468, Mismatches: 47, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
280 91 0.19
281 192 0.41
283 1 0.00
284 1 0.00
287 2 0.00
289 1 0.00
291 168 0.36
292 4 0.01
293 4 0.01
294 4 0.01
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (281 bp):
GTCTACTTCTCTGTTCTTATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTATCT
CATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTT
CTCTGTTCTCATCAGGAAGATGACCGCCTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGA
AGGCGGATTTGGACCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATT
AAGCTTCGTTTCATTGATTTG
Found at i:23535465 original size:122 final size:122
Alignment explanation
Indices: 23535248--23535512 Score: 413
Period size: 122 Copynumber: 2.2 Consensus size: 122
23535238 CGGATTTGGT
* * *
23535248 CCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCA
1 CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * * *
23535313 TTGATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGAC
66 TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTCATTGATTTAAC
*
23535370 CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCA
1 CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * * *
23535435 TTAATTTGGTCTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAAT
66 TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTCATTGATTTAAC
*
23535492 TCACTTCTCTGTATCTCATCA
1 CCACTTCTCTGTATCTCATCA
23535513 GGAATGTGGA
Statistics
Matches: 130, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
122 130 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (122 bp):
CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTCATTGATTTAAC
Found at i:23535557 original size:206 final size:206
Alignment explanation
Indices: 23535315--23537561 Score: 1751
Period size: 206 Copynumber: 11.0 Consensus size: 206
23535305 TTGTTTCATT
* * * * * * *
23535315 GATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCT
1 GATTTGGTCCACTTCTTTGTTCTCATTAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCT
*
23535380 GTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGT
66 GTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGT
*
23535445 CTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCA
131 CTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATCCACTTCTCTGTATCTCA
23535510 TCAGGAATGTG
196 TCAGGAATGTG
* * *
23535521 GATTTGGACCACTTCTTTGTTCTCATTAGGAAGATGATCGTTTTATTACTTTGACCCACTTCTCT
1 GATTTGGTCCACTTCTTTGTTCTCATTAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCT
* *
23535586 GTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGT
66 GTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGT
* * * * * * * * *
23535651 CTACTT-TTTGTTCTTATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCA
131 CTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATCCACTTCTCTGTATCTCA
*
23535715 TTAGGAA-GATGG
196 TCAGGAATG-T-G
* * * *
23535727 GATTTGAAGT---C-TCATTTG---T-ATT--G-AGCT--TCG-TTTCATTGATTTAG-TCTACT
1 GATTTG--GTCCACTTC-TTTGTTCTCATTAGGAAGATGATCGCTTT-ATTGCTTT-GACCCACT
*** * * *
23535777 TCTCTGT-TCTCATCAGGAAGATGACCACCTCATTGATTTAATC-CACTTC-T-CTGTATC-TC-
61 TCTCTGTATCTCATCAGGAAGATG---GGGT--TTGA---AGTCTCA-TTCGTATTG-AGCTTCG
* ** * * *
23535836 -ATCAAGAAGGCGGATTTGGTCCACTTCTCTATATCTCATCAGGAAGATG---GGGT--TTGA--
116 TTTC-ATTA-----ATTTGGTCTACTTCTCTGT-TCTCATCAGGAAGATGACCGCGTCATTGATT
* * * * *****
23535893 -AGTCTCA-TTCATAT-TGAGCT-TTGTTTCAT-T-
174 TAATC-CACTTC-TCTGT-ATCTCATCAGGAATGTG
* * * * * * *
23535923 GATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCT
1 GATTTGGTCCACTTCTTTGTTCTCATTAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCT
*
23535988 GTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGT
66 GTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGT
*
23536053 CTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCA
131 CTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATCCACTTCTCTGTATCTCA
23536118 TCAGGAATGTG
196 TCAGGAATGTG
* * * *
23536129 GATTTGGACCACTTCTTTGTTCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCT
1 GATTTGGTCCACTTCTTTGTTCTCATTAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCT
* * *
23536194 GTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGT
66 GTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGT
* * * * * * * * *
23536259 CTACATT-T-TGTTCTTATTAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTC
131 CTAC-TTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATCCACTTCTCTGTATCTC
*
23536322 ATTAGGAA-GATGG
195 ATCAGGAATG-T-G
* * * *
23536335 GATTTGAAGT---C-TCATTTG---T-ATT--G-AGCT--TCG-TTTCATTGATTTAG-TCTACT
1 GATTTG--GTCCACTTC-TTTGTTCTCATTAGGAAGATGATCGCTTT-ATTGCTTT-GACCCACT
*** * * *
23536385 TCTCTGT-TCTCATCAGGAAGATGACCACCTCATTGATTTAATC-CACTTC-T-CTGTATC-TC-
61 TCTCTGTATCTCATCAGGAAGATG---GGGT--TTGA---AGTCTCA-TTCGTATTG-AGCTTCG
* ** * *
23536444 -ATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATG---GGGT--TTGA--
116 TTTC-ATTA-----ATTTGGTCTACTTCTCTGT-TCTCATCAGGAAGATGACCGCGTCATTGATT
* * * * *****
23536501 -AGTCTCA-TTCATAT-TGAGCT-TTGTTTCAT-T-
174 TAATC-CACTTC-TCTGT-ATCTCATCAGGAATGTG
* * * * * * * *
23536531 GATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTACTTTGACCCACTTCTCT
1 GATTTGGTCCACTTCTTTGTTCTCATTAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCT
*
23536596 GTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGT
66 GTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGT
*
23536661 CTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCA
131 CTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATCCACTTCTCTGTATCTCA
23536726 TCAGGAATGTG
196 TCAGGAATGTG
* * * *
23536737 GATTTGGACCACTTCTTTGTTCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCT
1 GATTTGGTCCACTTCTTTGTTCTCATTAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCT
* * *
23536802 GTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGT
66 GTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGT
* *
23536867 CTACTTCTCTATTCTCATCAGGAAGATGACCGCCTCATTGATTTAATCCACTTCTCTGTATCTCA
131 CTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATCCACTTCTCTGTATCTCA
* * *
23536932 TTAGGAAGGCG
196 TCAGGAATGTG
* * ** * *
23536943 GATTTGGTCCACTTCTTTGTATCTTATCAGGAAGATTTTCGCTTTATTGCTTTGGCCCATTTCTC
1 GATTTGGTCCACTTCTTTGT-TCTCATTAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTC
* * * * *
23537008 TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGCTTCAATGATTTGG
65 TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGG
* * *
23537073 TCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTG-TTTCAATCCATTTCTCTGTATC
130 TCTACTTCTCTGT-TCTCATCAGGAAGATGACCGCGTCATTGATTT-AATCCACTTCTCTGTATC
* * *
23537137 TCATTAAGAA-GACG
193 TCATCAGGAATG-TG
* * * * * *
23537151 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGATAATCGCTTTATTGCTTTGACCCACTTCTC
1 GATTTGGTCCACTTCTTTGT-TCTCATTAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTC
* * ** * *
23537216 TATATCTCATCAGGAAGATGGGGTTTGAAGTCTTATTCGTATTGAGCTTCACTTCTTTGATTTGG
65 TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGG
** * * * * *
23537281 TCTACTTCTCAATATCTCATTAGAAAGATGATCGCCTCATT--TTTCAATCCACTTCTCTGTATT
130 TCTACTTCTCTGT-TCTCATCAGGAAGATGACCGCGTCATTGATTT-AATCCACTTCTCTGTATC
*
23537344 TCATCAGGAA-GACG
193 TCATCAGGAATG-TG
* * * *
23537358 GATTTGGTTCACTTCTCTGTATCTCATCT-GAAAGATGATCGCTTTATTACTTTGACCCACTTCT
1 GATTTGGTCCACTTCTTTGT-TCTCAT-TAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCT
* * * * * *
23537422 CTGTATCTCATCAAGAAGATAGAGTTTGAAGTCTCATTCGAATTGAGCTTTGTTTCATTTATTTG
64 CTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTG
* * * * * *
23537487 GTCTACTTCTCTATATCTCATCAAGAAGATGACCGCCTTATTG-TTTCAATGCACTTCTCTGTAC
129 GTCTACTTCTCTGT-TCTCATCAGGAAGATGACCGCGTCATTGATTT-AATCCACTTCTCTGTAT
23537551 CTCATCAGGAA
192 CTCATCAGGAA
23537562 GATGACCGTT
Statistics
Matches: 1628, Mismatches: 277, Indels: 270
0.75 0.13 0.12
Matches are distributed among these distances:
194 4 0.00
195 36 0.02
196 83 0.05
197 43 0.03
198 14 0.01
199 38 0.02
200 35 0.02
201 34 0.02
202 30 0.02
203 30 0.02
204 38 0.02
205 145 0.09
206 511 0.31
207 352 0.22
208 235 0.14
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (206 bp):
GATTTGGTCCACTTCTTTGTTCTCATTAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCT
GTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGT
CTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATCCACTTCTCTGTATCTCA
TCAGGAATGTG
Done.