Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 61 of 171
Found at i:23535687 original size:121 final size:122
Alignment explanation
Indices: 23535522--23535837 Score: 429
Period size: 121 Copynumber: 2.6 Consensus size: 122
23535512 AGGAATGTGG
* * * * *
23535522 ATTTGGACCACTTCTTTGTTCTCATTAGGAAGATGATCGTTTTATTACTTTGACCCACTTCTCTG
1 ATTTGGTCTACTTCTTTGTTCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTG
*
23535587 TATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTA
66 TATCTCATTAGGAAGATGGGATTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTA
* * *
23535644 ATTTGGTCTACTT-TTTGTTCTTATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTG
1 ATTTGGTCTACTTCTTTGTTCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTG
* * * *
23535708 TACCTCATTAGGAAGATGGGATTTGAAGTCTCATTTGTATTGAGCTTCGTTTCATTG
66 TATCTCATTAGGAAGATGGGATTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTA
* * * * * * *
23535765 ATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGA-TTTAATCCACTTCTCT
1 ATTTGGTCTACTTCTTTGTTCTCATCAGGAAGATGACCGCTTTATT-ACTTTGACCCACTTCTCT
23535829 GTATCTCAT
65 GTATCTCAT
23535838 CAAGAAGGCG
Statistics
Matches: 168, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
121 109 0.65
122 59 0.35
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.42
Consensus pattern (122 bp):
ATTTGGTCTACTTCTTTGTTCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTG
TATCTCATTAGGAAGATGGGATTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTA
Found at i:23535790 original size:327 final size:329
Alignment explanation
Indices: 23535248--23535884 Score: 999
Period size: 327 Copynumber: 1.9 Consensus size: 329
23535238 CGGATTTGGT
* *
23535248 CCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCA
1 CCACTTCTCTATATCTCATCAGGAAGATGGGGTTTAAAGTCTCATTCATATTGAGCTTCGTTTCA
*
23535313 TTGATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCT
66 TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCT
* * *
23535378 CTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTG
131 CTGTACCTCATCAAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTA
* * *
23535443 GTCTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCT
196 GTCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCT
* * * * * *
23535508 CATCAGGAATGTGGATTTGGACCACTTCTTTGT-TCTCATTAGGAAGATGATCGTTTTATTACTT
261 CATCAAGAAGGCGGATTTGGACCACTTCTCTATATCTCATCAGGAAGATGATCGTTTTATTACTT
23535572 TGAC
326 TGAC
* * *
23535576 CCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCA
1 CCACTTCTCTATATCTCATCAGGAAGATGGGGTTTAAAGTCTCATTCATATTGAGCTTCGTTTCA
* * * * *
23535641 TTAATTTGGTCTACTT-TTTGTTCTTATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCT
66 TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCT
* * * * *
23535705 TTGTACCTCATTAGGAAGATGGGATTTGAAGTCTCATTTGTATTGAGCTTCGTTTCATTGATTTA
131 CTGTACCTCATCAAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTA
23535770 GTCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCT
196 GTCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCT
*
23535835 CATCAAGAAGGCGGATTTGGTCCACTTCTCTATATCTCATCAGGAAGATG
261 CATCAAGAAGGCGGATTTGGACCACTTCTCTATATCTCATCAGGAAGATG
23535885 GGGTTTGAAG
Statistics
Matches: 279, Mismatches: 29, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
327 189 0.68
328 90 0.32
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39
Consensus pattern (329 bp):
CCACTTCTCTATATCTCATCAGGAAGATGGGGTTTAAAGTCTCATTCATATTGAGCTTCGTTTCA
TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCT
CTGTACCTCATCAAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTA
GTCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCT
CATCAAGAAGGCGGATTTGGACCACTTCTCTATATCTCATCAGGAAGATGATCGTTTTATTACTT
TGAC
Found at i:23535852 original size:37 final size:37
Alignment explanation
Indices: 23535811--23535881 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
23535801 CCACCTCATT
*
23535811 GATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCG
1 GATTTAATCCACTTCTCTATATCTCATCAAGAAGGCG
** *
23535848 GATTTGGTCCACTTCTCTATATCTCATCAGGAAG
1 GATTTAATCCACTTCTCTATATCTCATCAAGAAG
23535882 ATGGGGTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (37 bp):
GATTTAATCCACTTCTCTATATCTCATCAAGAAGGCG
Found at i:23535986 original size:159 final size:159
Alignment explanation
Indices: 23535697--23536003 Score: 470
Period size: 159 Copynumber: 1.9 Consensus size: 159
23535687 TTGCTTTGAC
* * * **
23535697 CCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAGTCTCATTTGTATTGAGCTTCGTTTCA
1 CCACTTCTCTATACCTCATCAGGAAGATGGGATTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * *
23535762 TTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCT
66 TTGATTTAGTCTACTTCTCTATTCTCATCAGAAAGATGACCACCTCATTGATTTAACCCACTTCT
23535827 CTGTATCTCATCAAGAAGGCGGATTTGGT
131 CTGTATCTCATCAAGAAGGCGGATTTGGT
* * *
23535856 CCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCA
1 CCACTTCTCTATACCTCATCAGGAAGATGGGATTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * * * *
23535921 TTGATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCT
66 TTGATTTAGTCTACTTCTCTATTCTCATCAGAAAGATGACCACCTCATTGATTTAACCCACTTCT
23535986 CTGTATCTCATCAAGAAG
131 CTGTATCTCATCAAGAAG
23536004 ATGGGGTTTG
Statistics
Matches: 132, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
159 132 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (159 bp):
CCACTTCTCTATACCTCATCAGGAAGATGGGATTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
TTGATTTAGTCTACTTCTCTATTCTCATCAGAAAGATGACCACCTCATTGATTTAACCCACTTCT
CTGTATCTCATCAAGAAGGCGGATTTGGT
Found at i:23536060 original size:281 final size:280
Alignment explanation
Indices: 23535576--23536164 Score: 919
Period size: 281 Copynumber: 2.1 Consensus size: 280
23535566 TTACTTTGAC
*
23535576 CCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCA
1 CCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCATATTGAGCTTCGTTTCA
* * * * * *
23535641 TTAATTTGGTCTACTTTTTGTTCTTATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTT
66 TTAATTTGGTCTACTTTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTC
* * * *
23535706 TGTACCTCATTAGGAAGATGGGATTTGAAGTCTCATTTGTATTGAGCTTCGTTTCATTGATTTAG
131 TGTACCTCATCAAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTAG
23535771 TCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCTC
196 TCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCTC
*
23535836 ATCAAGAAGGCGGATTTGGT
261 ATCAAGAAGGCGGATTTGGA
* * * *
23535856 CCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCA
1 CCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCATATTGAGCTTCGTTTCA
*
23535921 TTGATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCT
66 TTAATTTGGTCTACTT-TCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCT
* * *
23535986 CTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTG
130 CTGTACCTCATCAAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTA
* * *
23536051 GTCTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCT
195 GTCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCT
* * *
23536116 CATCAGGAATGTGGATTTGGA
260 CATCAAGAAGGCGGATTTGGA
*
23536137 CCACTTCTTTGT-TCTCATTAGGAAGATG
1 CCACTTCTCTGTATCTCATTAGGAAGATG
23536165 ACCGTTTTAT
Statistics
Matches: 279, Mismatches: 29, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
280 90 0.32
281 189 0.68
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (280 bp):
CCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCATATTGAGCTTCGTTTCA
TTAATTTGGTCTACTTTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTC
TGTACCTCATCAAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTAG
TCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCTC
ATCAAGAAGGCGGATTTGGA
Found at i:23536073 original size:122 final size:122
Alignment explanation
Indices: 23535856--23536120 Score: 413
Period size: 122 Copynumber: 2.2 Consensus size: 122
23535846 CGGATTTGGT
* * *
23535856 CCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCA
1 CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * * *
23535921 TTGATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGAC
66 TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTCATTGATTTAAC
*
23535978 CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCA
1 CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * * *
23536043 TTAATTTGGTCTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAAT
66 TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTCATTGATTTAAC
*
23536100 TCACTTCTCTGTATCTCATCA
1 CCACTTCTCTGTATCTCATCA
23536121 GGAATGTGGA
Statistics
Matches: 130, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
122 130 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (122 bp):
CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTCATTGATTTAAC
Found at i:23536094 original size:608 final size:608
Alignment explanation
Indices: 23534933--23536939 Score: 3780
Period size: 608 Copynumber: 3.3 Consensus size: 608
23534923 CTTATCTGTA
* * * * * * *
23534933 TCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTTTATCTCATCAGGAAGATAG
1 TCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
* *
23534998 GGTTTGAAGTCTCATTCGTATTAAGCTTCGTTTCATTGATTTGGTCTACTTTTTGTTCTTATCAG
66 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTTTTGTTCTTATCAG
23535063 GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAG
131 GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAG
23535128 TCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGA
196 TCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGA
23535193 CCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCT
261 CCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCT
23535258 ATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGT
326 ATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGT
23535323 CTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCA
391 CTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCA
23535388 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCT
456 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCT
23535453 CTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAAT
521 CTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAAT
23535518 GTGGATTTGGACCACTTCTTTGT
586 GTGGATTTGGACCACTTCTTTGT
*
23535541 TCTCATTAGGAAGATGATCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
1 TCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
*
23535606 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTTTTGTTCTTATCAG
66 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTTTTGTTCTTATCAG
23535671 GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAG
131 GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAG
23535736 TCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGA
196 TCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGA
23535801 CCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCT
261 CCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCT
23535866 ATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGT
326 ATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGT
23535931 CTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCA
391 CTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCA
23535996 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCT
456 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCT
23536061 CTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAAT
521 CTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAAT
23536126 GTGGATTTGGACCACTTCTTTGT
586 GTGGATTTGGACCACTTCTTTGT
23536149 TCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
1 TCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
* *
23536214 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACATTTTGTTCTTATTAG
66 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTTTTGTTCTTATCAG
23536279 GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAG
131 GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAG
23536344 TCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGA
196 TCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGA
23536409 CCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCT
261 CCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCT
*
23536474 GTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGT
326 ATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGT
*
23536539 CTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTACTTTGACCCACTTCTCTGTATCTCA
391 CTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCA
23536604 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCT
456 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCT
23536669 CTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAAT
521 CTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAAT
23536734 GTGGATTTGGACCACTTCTTTGT
586 GTGGATTTGGACCACTTCTTTGT
23536757 TCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
1 TCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
* * *
23536822 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTCTCTATTCTCATCA
66 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTT-TTTGTTCTTATCA
* * * * * * *
23536887 GGAAGATGACCGCCTCATTGATTTAATCCACTTCTCTGTATCTCATTAGGAAG
130 GGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAG
23536940 GCGGATTTGG
Statistics
Matches: 1371, Mismatches: 27, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
608 1316 0.96
609 55 0.04
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (608 bp):
TCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTTTTGTTCTTATCAG
GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAG
TCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGA
CCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCT
ATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGT
CTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCA
TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCT
CTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAAT
GTGGATTTGGACCACTTCTTTGT
Found at i:23536189 original size:84 final size:84
Alignment explanation
Indices: 23536046--23536208 Score: 211
Period size: 84 Copynumber: 1.9 Consensus size: 84
23536036 CGTTTCATTA
* * **
23536046 ATTTGGTCTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTG
1 ATTTGGACCACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAACCCACTTCTCTG
23536111 TATCTCATCAGGAATGTGG
66 TATCTCATCAGGAATGTGG
* * ** * *
23536130 ATTTGGACCACTTCTTTGTTCTCATTAGGAAGATGACCGTTTTATT-ACTTTGACCCACTTCTCT
1 ATTTGGACCACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGA-TTTAACCCACTTCTCT
*
23536194 GTATCTCATTAGGAA
65 GTATCTCATCAGGAA
23536209 GATGGGGTTT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
83 1 0.01
84 66 0.99
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.39
Consensus pattern (84 bp):
ATTTGGACCACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAACCCACTTCTCTG
TATCTCATCAGGAATGTGG
Found at i:23536287 original size:121 final size:120
Alignment explanation
Indices: 23536144--23536445 Score: 426
Period size: 121 Copynumber: 2.5 Consensus size: 120
23536134 GGACCACTTC
*
23536144 TTTGTTCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAA
1 TTTGTTCTCATTAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAA
* *
23536209 GATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACAT
66 GATGGGATTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTAGTCTAC-T
* * * *
23536265 TTTGTTCTTATTAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAA
1 TTTGTTCTCATTAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAA
* *
23536330 GATGGGATTTGAAGTCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACT
66 GATGGGATTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTAGTCTACT
* * * * * *
23536385 TCTCTGTTCTCATCAGGAAGATGACCACCTCATTGA-TTTAATCCACTTCTCTGTATCTCAT
1 T-T-TGTTCTCATTAGGAAGATGACCGCTTTATT-ACTTTGACCCACTTCTCTGTATCTCAT
23536446 CAAGAAGGCG
Statistics
Matches: 159, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
120 2 0.01
121 111 0.70
122 46 0.29
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.42
Consensus pattern (120 bp):
TTTGTTCTCATTAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAA
GATGGGATTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTAGTCTACT
Found at i:23536460 original size:37 final size:37
Alignment explanation
Indices: 23536419--23536489 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
23536409 CCACCTCATT
23536419 GATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCG
1 GATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCG
** *
23536456 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAG
1 GATTTAATCCACTTCTCTGTATCTCATCAAGAAG
23536490 ATGGGGTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (37 bp):
GATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCG
Found at i:23536594 original size:159 final size:159
Alignment explanation
Indices: 23536305--23536611 Score: 472
Period size: 159 Copynumber: 1.9 Consensus size: 159
23536295 TTGCTTTGAC
* * **
23536305 CCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAGTCTCATTTGTATTGAGCTTCGTTTCA
1 CCACTTCTCTGTACCTCATCAGGAAGATGGGATTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * *
23536370 TTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCT
66 TTGATTTAGTCTACTTCTCTATTCTCATCAGAAAGATGACCACCTCATTGATTTAACCCACTTCT
23536435 CTGTATCTCATCAAGAAGGCGGATTTGGT
131 CTGTATCTCATCAAGAAGGCGGATTTGGT
* * *
23536464 CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCA
1 CCACTTCTCTGTACCTCATCAGGAAGATGGGATTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * * *
23536529 TTGATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATT-ACTTTGACCCACTTC
66 TTGATTTAGTCTACTTCTCTATTCTCATCAGAAAGATGACCACCTCATTGA-TTTAACCCACTTC
23536593 TCTGTATCTCATCAAGAAG
130 TCTGTATCTCATCAAGAAG
23536612 ATGGGGTTTG
Statistics
Matches: 133, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
158 1 0.01
159 132 0.99
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (159 bp):
CCACTTCTCTGTACCTCATCAGGAAGATGGGATTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
TTGATTTAGTCTACTTCTCTATTCTCATCAGAAAGATGACCACCTCATTGATTTAACCCACTTCT
CTGTATCTCATCAAGAAGGCGGATTTGGT
Found at i:23536681 original size:122 final size:122
Alignment explanation
Indices: 23536464--23536728 Score: 415
Period size: 122 Copynumber: 2.2 Consensus size: 122
23536454 CGGATTTGGT
* *
23536464 CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCA
1 CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * *
23536529 TTGATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATT-ACTTTGAC
66 TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTCATTGA-TTTAAC
*
23536586 CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCA
1 CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
* * * *
23536651 TTAATTTGGTCTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAAT
66 TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTCATTGATTTAAC
*
23536708 TCACTTCTCTGTATCTCATCA
1 CCACTTCTCTGTATCTCATCA
23536729 GGAATGTGGA
Statistics
Matches: 131, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
122 130 0.99
123 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (122 bp):
CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTCGTTTCA
TTAATTTGGTCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTCATTGATTTAAC
Found at i:23536686 original size:281 final size:280
Alignment explanation
Indices: 23536184--23536772 Score: 912
Period size: 281 Copynumber: 2.1 Consensus size: 280
23536174 TTACTTTGAC
*
23536184 CCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCA
1 CCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCATATTGAGCTTCGTTTCA
* * * * * * *
23536249 TTGATTTGGTCTACATTTTGTTCTTATTAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTT
66 TTGATTTGGTCTACATTTTATTCTCATCAGAAAGATGACCGCCTTATTACTTTGACCCACTTCTC
* * * *
23536314 TGTACCTCATTAGGAAGATGGGATTTGAAGTCTCATTTGTATTGAGCTTCGTTTCATTGATTTAG
131 TGTACCTCATCAAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTAG
23536379 TCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCTC
196 TCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCTC
*
23536444 ATCAAGAAGGCGGATTTGGT
261 ATCAAGAAGGCGGATTTGGA
* * *
23536464 CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCA
1 CCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCATATTGAGCTTCGTTTCA
23536529 TTGATTTGGTCTAC-TTCTCTATTCTCATCAGAAAGATGACCGCCTTATTACTTTGACCCACTTC
66 TTGATTTGGTCTACATT-T-TATTCTCATCAGAAAGATGACCGCCTTATTACTTTGACCCACTTC
* *
23536593 TCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTT
129 TCTGTACCTCATCAAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTT
* * * *
23536658 GGTCTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATC
194 AGTCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATC
* * *
23536723 TCATCAGGAATGTGGATTTGGA
259 TCATCAAGAAGGCGGATTTGGA
*
23536745 CCACTTCTTTGT-TCTCATTAGGAAGATG
1 CCACTTCTCTGTATCTCATTAGGAAGATG
23536773 ACCGTTTTAT
Statistics
Matches: 280, Mismatches: 27, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
279 2 0.01
280 91 0.32
281 187 0.67
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (280 bp):
CCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCATATTGAGCTTCGTTTCA
TTGATTTGGTCTACATTTTATTCTCATCAGAAAGATGACCGCCTTATTACTTTGACCCACTTCTC
TGTACCTCATCAAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTAG
TCTACTTCTCTGTTCTCATCAGGAAGATGACCACCTCATTGATTTAATCCACTTCTCTGTATCTC
ATCAAGAAGGCGGATTTGGA
Found at i:23536797 original size:84 final size:84
Alignment explanation
Indices: 23536654--23536816 Score: 211
Period size: 84 Copynumber: 1.9 Consensus size: 84
23536644 CGTTTCATTA
* * **
23536654 ATTTGGTCTACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTG
1 ATTTGGACCACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAACCCACTTCTCTG
23536719 TATCTCATCAGGAATGTGG
66 TATCTCATCAGGAATGTGG
* * ** * *
23536738 ATTTGGACCACTTCTTTGTTCTCATTAGGAAGATGACCGTTTTATT-ACTTTGACCCACTTCTCT
1 ATTTGGACCACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGA-TTTAACCCACTTCTCT
*
23536802 GTATCTCATTAGGAA
65 GTATCTCATCAGGAA
23536817 GATGGGGTTT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
83 1 0.01
84 66 0.99
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.39
Consensus pattern (84 bp):
ATTTGGACCACTTCTCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAACCCACTTCTCTG
TATCTCATCAGGAATGTGG
Found at i:23536947 original size:37 final size:37
Alignment explanation
Indices: 23536906--23536976 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
23536896 CCGCCTCATT
*
23536906 GATTTAATCCACTTCTCTGTATCTCATTAGGAAGGCG
1 GATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCG
** * *
23536943 GATTTGGTCCACTTCTTTGTATCTTATCAGGAAG
1 GATTTAATCCACTTCTCTGTATCTCATCAGGAAG
23536977 ATTTTCGCTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (37 bp):
GATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCG
Found at i:23536948 original size:608 final size:607
Alignment explanation
Indices: 23534933--23537563 Score: 3747
Period size: 608 Copynumber: 4.3 Consensus size: 607
23534923 CTTATCTGTA
* * * * * *
23534933 TCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTTTATCTCATCAGGAAGATAG
1 TCTCATTAGGAAGATGATCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
* * *
23534998 GGTTTGAAGTCTCATTCGTATTAAGCTTCGTTTCATTGATTTGGTCTACTTTTTGTTCTTATCAG
66 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTTCTGTTCTTATCAG
23535063 GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAG
131 GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGA-GGGATTTGAAG
23535128 TCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGA
195 TCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGA
23535193 CCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCT
260 CCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCT
23535258 ATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGT
325 ATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGT
23535323 CTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCA
390 CTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCA
23535388 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCT
455 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCT
23535453 CTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAAT
520 CTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAAT
23535518 GTGGATTTGGACCACTTCTTTGT
585 GTGGATTTGGACCACTTCTTTGT
23535541 TCTCATTAGGAAGATGATCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
1 TCTCATTAGGAAGATGATCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
* *
23535606 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTTTTGTTCTTATCAG
66 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTTCTGTTCTTATCAG
23535671 GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAAG
131 GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGA-GGGATTTGAAG
23535736 TCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGA
195 TCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGA
23535801 CCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCT
260 CCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCT
23535866 ATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGT
325 ATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGT
23535931 CTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCA
390 CTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCA
23535996 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCT
455 TCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCT
23536061 CTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAAT
520 CTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAAT
23536126 GTGGATTTGGACCACTTCTTTGT
585 GTGGATTTGGACCACTTCTTTGT
*
23536149 TCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
1 TCTCATTAGGAAGATGATCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
*
23536214 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACATTT-TGTTCTTATTA
66 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTAC-TTTCTGTTCTTATCA
23536278 GGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGATGGGATTTGAA
130 GGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGA-GGGATTTGAA
23536343 GTCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATG
194 GTCTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATG
23536408 ACCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTC
259 ACCACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTC
*
23536473 TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGG
324 TATATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGG
*
23536538 TCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTACTTTGACCCACTTCTCTGTATCTC
389 TCTACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTC
23536603 ATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTC
454 ATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTC
23536668 TCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAA
519 TCTGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAA
23536733 TGTGGATTTGGACCACTTCTTTGT
584 TGTGGATTTGGACCACTTCTTTGT
*
23536757 TCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
1 TCTCATTAGGAAGATGATCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
* *
23536822 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTCTCTATTCTCATCA
66 GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTT-TCTGTTCTTATCA
* * * * * * *
23536887 GGAAGATGACCGCCTCATTGATTTAATCCACTTCTCTGTATCTCATTAGGAAG-GCGGATTTG--
130 GGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGAG-GGATTTGAA
* * * * * *
23536949 GTC-CACTTCTTTGTATCTTATCAGGAAGATTTTCGCTTT-ATTGCTTTGGCCCATTTCTCTGTA
194 GTCTCA----TTTGTA---T-T---G-AG--CTTCG-TTTCATTGATTTAGTCTACTTCTCTGT-
*** * * * * ***
23537012 TCTCATCAGGAAGATG---GGGT--TTGA---AGTCTCA-TTCATAT-TGAGCT-TTGCTTCAA-
243 TCTCATCAGGAAGATGACCACCTCATTGATTTAATC-CACTTC-TCTGT-ATCTCAT-CAAGAAG
* * * * ** ** * * * *
23537065 --TGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCAT-T
304 GCGGATTTGGTCCACTTCTCTATATCTCATCAGGAAGATG-GGGTTTGA-AGTCTC-ATTCATAT
* *
23537127 T---CTCTGTATCTCATTAAGAAGACGGATTTGGTCTACTTCTCTATATCTCATCA-AGAAGATA
366 TGAGCTTTGT-T-TCATT---------GATTTGGTCTACTTCTCTAT-TCTCATCAGA-AAGATG
* * * * *
23537188 ATCGCTTTATTGCTTTGACCCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTTATT
418 ACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATT
** * * ** * * * *
23537253 CGTATTGAGCTTCACTTCTTTGATTTGGTCTACTTCTCAATATCTCATTAGAAAGATGATCGCCT
483 CGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCTCTGT-TCTCATCAGGAAGATGACCGCGT
* * * ** *
23537318 CATT--TTTCAATCCACTTCTCTGTATTTCATCAGGAA-GACGGATTTGGTTCACTTCTCTGT
547 CATTGATTT-AATTCACTTCTCTGTATCTCATCAGGAATG-TGGATTTGGACCACTTCTTTGT
* * * *
23537378 ATCTCATCT-GAAAGATGATCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGAT
1 -TCTCAT-TAGGAAGATGATCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGAT
* * * * * * * *
23537442 AGAGTTTGAAGTCTCATTCGAATTGAGCTTTGTTTCATTTATTTGGTCTACTTCTCTATATCTCA
64 GGGGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTT-TCTGT-TCTTA
* * * ** * *
23537507 TCAAGAAGATGACCGCCTTATTG-TTTCAATGCACTTCTCTGTACCTCATCAGGAAGA
127 TCAGGAAGATGACCGCTTTATTGCTTT-GACCCACTTCTTTGTACCTCATTAGGAAGA
23537564 TGACCGTTTT
Statistics
Matches: 1884, Mismatches: 91, Indels: 80
0.92 0.04 0.04
Matches are distributed among these distances:
605 2 0.00
606 3 0.00
607 3 0.00
608 1320 0.70
609 68 0.04
610 36 0.02
611 8 0.00
612 15 0.01
613 16 0.01
615 4 0.00
616 1 0.00
617 3 0.00
619 22 0.01
620 44 0.02
621 151 0.08
622 135 0.07
623 53 0.03
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39
Consensus pattern (607 bp):
TCTCATTAGGAAGATGATCGTTTTATTACTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGG
GGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGGTCTACTTTCTGTTCTTATCAG
GAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTGTACCTCATTAGGAAGAGGGATTTGAAGT
CTCATTTGTATTGAGCTTCGTTTCATTGATTTAGTCTACTTCTCTGTTCTCATCAGGAAGATGAC
CACCTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTA
TATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTGATTTGGTC
TACTTCTCTATTCTCATCAGAAAGATGACCGCCTTATTGCTTTGACCCACTTCTCTGTATCTCAT
CAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGGTCTACTTCTC
TGTTCTCATCAGGAAGATGACCGCGTCATTGATTTAATTCACTTCTCTGTATCTCATCAGGAATG
TGGATTTGGACCACTTCTTTGT
Found at i:23537082 original size:207 final size:208
Alignment explanation
Indices: 23536531--23537563 Score: 1407
Period size: 207 Copynumber: 5.0 Consensus size: 208
23536521 TTGTTTCATT
* * * * *
23536531 GATTTGGTCTACTTCTCTAT-TCTCATCAGAAAGATGACCGCCTTATTACTTTGACCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTACTTTGACCCACTTCTC
* *
23536595 TGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGG
66 TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGG
* * *
23536660 TCTACTTCTCTGT-TCTCATCAGGAAGATGACCGCGTCATTGATTT-AATTCACTTCTCTGTATC
131 TCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTG-TTTCAATCCACTTCTCTGTATC
*
23536723 TCATCAGGAATG-TG
195 TCATCAGGAA-GACG
* * * * *
23536737 GATTTGGACCACTTCTTTGT-TCTCATTAGGAAGATGACCGTTTTATTACTTTGACCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTACTTTGACCCACTTCTC
* *
23536801 TGTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGG
66 TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGG
23536866 TCTACTTCTCTAT-TCTCATCAGGAAGATGACCGCCTCATTGATTT-AATCCACTTCTCTGTATC
131 TCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTG-TTTCAATCCACTTCTCTGTATC
* *
23536929 TCATTAGGAAGGCG
195 TCATCAGGAAGACG
* * ** * * *
23536943 GATTTGGTCCACTTCTTTGTATCTTATCAGGAAGATTTTCGCTTTATTGCTTTGGCCCATTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTACTTTGACCCACTTCTC
* * * *
23537008 TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGCTTCAATGATTTGG
66 TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGG
* * *
23537073 TCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCATTTCTCTGTATCT
131 TCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCACTTCTCTGTATCT
* *
23537138 CATTAAGAAGACG
196 CATCAGGAAGACG
* * * * *
23537151 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGATAATCGCTTTATTGCTTTGACCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTACTTTGACCCACTTCTC
* * ** *
23537216 TATATCTCATCAGGAAGATGGGGTTTGAAGTCTTATTCGTATTGAGCTTCACTTCTTTGATTTGG
66 TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGG
* * * * *
23537281 TCTACTTCTCAATATCTCATTAGAAAGATGATCGCCTCATT-TTTCAATCCACTTCTCTGTATTT
131 TCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCACTTCTCTGTATCT
23537345 CATCAGGAAGACG
196 CATCAGGAAGACG
* * *
23537358 GATTTGGTTCACTTCTCTGTATCTCATCTGAAAGATGATCGCTTTATTACTTTGACCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTACTTTGACCCACTTCTC
* * * * * *
23537423 TGTATCTCATCAAGAAGATAGAGTTTGAAGTCTCATTCGAATTGAGCTTTGTTTCATTTATTTGG
66 TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGG
* * * *
23537488 TCTACTTCTCTATATCTCATCAAGAAGATGACCGCCTTATTGTTTCAATGCACTTCTCTGTACCT
131 TCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCACTTCTCTGTATCT
23537553 CATCAGGAAGA
196 CATCAGGAAGA
23537564 TGACCGTTTT
Statistics
Matches: 730, Mismatches: 92, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
205 1 0.00
206 206 0.28
207 287 0.39
208 236 0.32
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (208 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTACTTTGACCCACTTCTC
TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTGATTTGG
TCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCACTTCTCTGTATCT
CATCAGGAAGACG
Found at i:23537215 original size:85 final size:85
Alignment explanation
Indices: 23537066--23537225 Score: 223
Period size: 85 Copynumber: 1.9 Consensus size: 85
23537056 TTGCTTCAAT
* * * *
23537066 GATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCATTTCTC
1 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGATAACCGCCTCATTGTTTCAACCCACTTCTC
*
23537131 TGTATCTCATTAAGAAGACG
66 TATATCTCATTAAGAAGACG
* * * *
23537151 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGATAATCGCTTTATTGCTTT-GACCCACTTCT
1 GATTTGGTCTACTTCTCTATATCTCATCAAGAAGATAACCGCCTCATTG-TTTCAACCCACTTCT
23537215 CTATATCTCAT
65 CTATATCTCAT
23537226 CAGGAAGATG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
85 62 0.95
86 3 0.05
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (85 bp):
GATTTGGTCTACTTCTCTATATCTCATCAAGAAGATAACCGCCTCATTGTTTCAACCCACTTCTC
TATATCTCATTAAGAAGACG
Found at i:23537362 original size:415 final size:413
Alignment explanation
Indices: 23536531--23537557 Score: 1427
Period size: 415 Copynumber: 2.5 Consensus size: 413
23536521 TTGTTTCATT
* * * *
23536531 GATTTGGTCTACTTCTCTAT-TCTCATCAGAAAGATGACCGCCTTATTACTTTGACCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGATCGCTTTATTACTTTGACCCACTTCTC
* *
23536595 TGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGTTTCATTAATTTGG
66 TGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTAATTTGG
* * *
23536660 TCTACTTCTCTGT-TCTCATCAGGAAGATGACCGCGTCATTGATTT-AATTCACTTCTCTGTATC
131 TCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTG-TTTCAATCCACTTCTCTGTATC
* * * * * * * *
23536723 TCATCAGGAATGTGGATTTGGACCACTTCTTTGTTCTCATTAGGAAGATGACCGTTTTATTACTT
195 TCATCAAGAATGCGGATTTGGACCACTTCTCTATTCTCATCAAGAAGATAACCGCTTTATTACTT
* * **
23536788 TGACCCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCGT
260 TGACCCACTTCTCTATATCTCATCAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCAC
* *
23536853 TTCATTGATTTGGTCTACTTCTCTATTCTCATCAGGAAGATGACCGCCTCATTGATTTAATCCAC
325 TTCATTGATTTGGTCTACTTCTCAATTCTCATCAGAAAGATGACCGCCTCATT-ATTTAATCCAC
* *
23536918 TTCTCTGTATCTCATTAGGAAGGCG
389 TTCTCTGTATCTCATCAGGAAGACG
* * * ** * * *
23536943 GATTTGGTCCACTTCTTTGTATCTTATCAGGAAGATTTTCGCTTTATTGCTTTGGCCCATTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGATCGCTTTATTACTTTGACCCACTTCTC
* * * *
23537008 TGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGCTTCAATGATTTGG
66 TGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTAATTTGG
*
23537073 TCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCATTTCTCTGTATCT
131 TCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCACTTCTCTGTATCT
* * * * *
23537138 CATTAAGAA-GACGGATTTGGTCTACTTCTCTATATCTCATCAAGAAGATAATCGCTTTATTGCT
196 CATCAAGAATG-CGGATTTGGACCACTTCTCTAT-TCTCATCAAGAAGATAACCGCTTTATTACT
* *
23537202 TTGACCCACTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTCTTATTCGTATTGAGCTTCA
259 TTGACCCACTTCTCTATATCTCATCAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCA
* * *
23537267 CTTCTTTGATTTGGTCTACTTCTCAATATCTCATTAGAAAGATGATCGCCTCATT-TTTCAATCC
324 CTTCATTGATTTGGTCTACTTCTCAAT-TCTCATCAGAAAGATGACCGCCTCATTATTT-AATCC
*
23537331 ACTTCTCTGTATTTCATCAGGAAGACG
387 ACTTCTCTGTATCTCATCAGGAAGACG
* *
23537358 GATTTGGTTCACTTCTCTGTATCTCATCTGAAAGATGATCGCTTTATTACTTTGACCCACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGATCGCTTTATTACTTTGACCCACTTCTC
* * *
23537423 TGTATCTCATCAAGAAGATAGAGTTTGAAGTCTCATTCGA-ATTGAGCTTTGTTTCATTTATTTG
66 TGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTC-ATATTGAGCTTTGTTTCATTAATTTG
* * * *
23537487 GTCTACTTCTCTATATCTCATCAAGAAGATGACCGCCTTATTGTTTCAATGCACTTCTCTGTACC
130 GTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCACTTCTCTGTATC
23537552 TCATCA
195 TCATCA
23537558 GGAAGATGAC
Statistics
Matches: 536, Mismatches: 71, Indels: 13
0.86 0.11 0.02
Matches are distributed among these distances:
412 17 0.03
413 111 0.21
414 70 0.13
415 313 0.58
416 25 0.05
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (413 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGAAAGATGATCGCTTTATTACTTTGACCCACTTCTC
TGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCATATTGAGCTTTGTTTCATTAATTTGG
TCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCACTTCTCTGTATCT
CATCAAGAATGCGGATTTGGACCACTTCTCTATTCTCATCAAGAAGATAACCGCTTTATTACTTT
GACCCACTTCTCTATATCTCATCAGGAAGATGGGGTTTAAAGTCTCATTCGTATTGAGCTTCACT
TCATTGATTTGGTCTACTTCTCAATTCTCATCAGAAAGATGACCGCCTCATTATTTAATCCACTT
CTCTGTATCTCATCAGGAAGACG
Found at i:23537544 original size:48 final size:48
Alignment explanation
Indices: 23537491--23537612 Score: 147
Period size: 48 Copynumber: 2.5 Consensus size: 48
23537481 TATTTGGTCT
* **
23537491 ACTTCTCTATATCTCATCAAGAAGATGACCGCCTTATTGT-TTCAATGC
1 ACTTCTCTGTATCTCATCAAGAAGATGACCGCCTTATT-TCTTCAACCC
* * ** **
23537539 ACTTCTCTGTACCTCATCAGGAAGATGACCGTTTTATTTCTTTGACCC
1 ACTTCTCTGTATCTCATCAAGAAGATGACCGCCTTATTTCTTCAACCC
23537587 ACTTCTCTGTATCTCATCAAGAAGAT
1 ACTTCTCTGTATCTCATCAAGAAGAT
23537613 AGAGTTTGAA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
47 1 0.02
48 61 0.98
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.36
Consensus pattern (48 bp):
ACTTCTCTGTATCTCATCAAGAAGATGACCGCCTTATTTCTTCAACCC
Found at i:23537652 original size:171 final size:171
Alignment explanation
Indices: 23537367--23538076 Score: 948
Period size: 171 Copynumber: 4.2 Consensus size: 171
23537357 GGATTTGGTT
* * * * *
23537367 CACTTCTCTGTATCTCATCTGAAAGATGATCGCTTTATTACTTTGACCCACTTCTCTGTATCTCA
1 CACTTCTCTGTATCTCATCAGGAAGATGACCGTTTTATTTCTTTGACCCACTTCTCTGTATCTCA
* *
23537432 TCA-AGAAGATAGAGTTTGAAGTCTCATTCGAATTGAGCTTTGTTTCATTTATTTGGTCTACTTC
66 TCAGA-AAGATAGAGTTTGAAGTCTCATTCGAATTGAGCTTCGTTTCATTGATTTGGTCTACTTC
*
23537496 TCTATATCTCATCAAGAAGATGACCGCCTTATTGTTTCAATG
130 TCTATATCTCATCAAGAAGATGACCGCCTTATTGTTTCAATC
*
23537538 CACTTCTCTGTACCTCATCAGGAAGATGACCGTTTTATTTCTTTGACCCACTTCTCTGTATCTCA
1 CACTTCTCTGTATCTCATCAGGAAGATGACCGTTTTATTTCTTTGACCCACTTCTCTGTATCTCA
* *
23537603 TCA-AGAAGATAGAGTTTGAAGTCTCATTCGAATTGAGCTTTGTTTCATTTATTTGGTCTACTTC
66 TCAGA-AAGATAGAGTTTGAAGTCTCATTCGAATTGAGCTTCGTTTCATTGATTTGGTCTACTTC
*
23537667 TCTATATCTCATCAAGAAGATGACCGCCTTATTGTTTCAATG
130 TCTATATCTCATCAAGAAGATGACCGCCTTATTGTTTCAATC
*
23537709 CACTTCTCTGTACCTCATCAGGAAGATGACCGTTTTATTTCTTTGACCCACTTCTCTGTATCTCA
1 CACTTCTCTGTATCTCATCAGGAAGATGACCGTTTTATTTCTTTGACCCACTTCTCTGTATCTCA
* * * * * * *
23537774 TCAGAAAGATGGGGTTTGAAATCTTATTTGTATTGAGCTTCGCTTCATTGATTT-GT-T-CTTCT
66 TCAGAAAGATAGAGTTTGAAGTCTCATTCGAATTGAGCTTCGTTTCATTGATTTGGTCTACTTCT
*
23537836 CTATATCTCATC-AGAAAGATGACCGTCTTATTGTTTCAATC
131 CTATATCTCATCAAG-AAGATGACCGCCTTATTGTTTCAATC
* * * ** * * * *
23537877 CACTTCTCTTTATCTTATTAATAAGATGATCATTTTATTGCTTTGACCCACTTCTCTATATCTCA
1 CACTTCTCTGTATCTCATCAGGAAGATGACCGTTTTATTTCTTTGACCCACTTCTCTGTATCTCA
* * * * *
23537942 TCAGAAAGATGGGGTTTGAAGTCTTATTCGTATTGAGCTTCGCTTT-ATTGATTTGGTCTAGTTC
66 TCAGAAAGATAGAGTTTGAAGTCTCATTCGAATTGAGCTTCG-TTTCATTGATTTGGTCTACTTC
** * * * *
23538006 TCTGCATCTCATCAGGAAGATGATCGCCTCATTATTTCAATC
130 TCTATATCTCATCAAGAAGATGACCGCCTTATTGTTTCAATC
* *
23538048 CACTTCTTTGTATCTCATTAGGAAGATGA
1 CACTTCTCTGTATCTCATCAGGAAGATGA
23538077 ATTTGGTCCA
Statistics
Matches: 489, Mismatches: 43, Indels: 14
0.90 0.08 0.03
Matches are distributed among these distances:
167 2 0.00
168 144 0.29
169 5 0.01
170 3 0.01
171 333 0.68
172 2 0.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (171 bp):
CACTTCTCTGTATCTCATCAGGAAGATGACCGTTTTATTTCTTTGACCCACTTCTCTGTATCTCA
TCAGAAAGATAGAGTTTGAAGTCTCATTCGAATTGAGCTTCGTTTCATTGATTTGGTCTACTTCT
CTATATCTCATCAAGAAGATGACCGCCTTATTGTTTCAATC
Found at i:23537747 original size:48 final size:48
Alignment explanation
Indices: 23537662--23537784 Score: 140
Period size: 48 Copynumber: 2.6 Consensus size: 48
23537652 TATTTGGTCT
* * **
23537662 ACTTCTCTATATCTCATCAAGAAGATGACCGCCTTATTGT-TTCAATGC
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTTATT-TCTTCAACCC
* ** **
23537710 ACTTCTCTGTACCTCATCAGGAAGATGACCGTTTTATTTCTTTGACCC
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTTATTTCTTCAACCC
*
23537758 ACTTCTCTGTATCTCATCAGAAAGATG
1 ACTTCTCTGTATCTCATCAGGAAGATG
23537785 GGGTTTGAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 1 0.02
48 62 0.98
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (48 bp):
ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTTATTTCTTCAACCC
Found at i:23537951 original size:48 final size:48
Alignment explanation
Indices: 23537831--23537952 Score: 140
Period size: 48 Copynumber: 2.5 Consensus size: 48
23537821 TTGATTTGTT
* *
23537831 CTTCTCTATATCTCATCAGAAAGATGACCGTCTTATTGTTTCAATCCA
1 CTTCTCTATATCTCATCAGAAAGATGACCATCTTATTGTTTCAACCCA
* * * * * *
23537879 CTTCTCTTTATCTTATTA-ATAAGATGATCATTTTATTGCTTT-GACCCA
1 CTTCTCTATATCTCATCAGA-AAGATGACCATCTTATTG-TTTCAACCCA
23537927 CTTCTCTATATCTCATCAGAAAGATG
1 CTTCTCTATATCTCATCAGAAAGATG
23537953 GGGTTTGAAG
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
47 1 0.02
48 55 0.92
49 4 0.07
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (48 bp):
CTTCTCTATATCTCATCAGAAAGATGACCATCTTATTGTTTCAACCCA
Found at i:23537998 original size:339 final size:342
Alignment explanation
Indices: 23537367--23538076 Score: 948
Period size: 339 Copynumber: 2.1 Consensus size: 342
23537357 GGATTTGGTT
* * *
23537367 CACTTCTCTGTATCTCATCTGAAAGATGATCGCTTTATTACTTTGACCCACTTCTCTGTATCTCA
1 CACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCA
* * * *
23537432 TCAAGAAGATAGAGTTTGAAGTCTCATTCGAATTGAGCTTTGTTTCATTTATTTGGTCTACTTCT
66 TCAAGAAGATAGAGTTTGAAATCTCATTCGAATTGAGCTTCGCTTCATTGATTTGGTCTACTTCT
* *
23537497 CTATATCTCATCAAGAAGATGACCGCCTTATTGTTTCAATGCACTTCTCTGTACCTCATCAGGAA
131 CTATATCTCATCAAGAAGATGACCGCCTTATTGTTTCAATCCACTTCTCTGTACCTCATCAAGAA
* * *
23537562 GATGACCGTTTTATTTCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATAGAGTTTGAAGTCT
196 GATGACCATTTTATTGCTTTGACCCACTTCTCTATATCTCATCAAGAAGATAGAGTTTGAAGTCT
* * *
23537627 CATTCGAATTGAGCTTTGTTTCATTTATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGACC
261 CATTCGAATTGAGCTTCGTTTCATTGATTTGGTCTACTTCTCTACATCTCATCAAGAAGATGACC
* * *
23537692 GCCTTATTGTTTCAATG
326 GCCTCATTATTTCAATC
* * *
23537709 CACTTCTCTGTACCTCATCAGGAAGATGACCGTTTTATTTCTTTGACCCACTTCTCTGTATCTCA
1 CACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCA
* * * * *
23537774 TC-AGAAAGATGGGGTTTGAAATCTTATTTGTATTGAGCTTCGCTTCATTGATTT-GT-T-CTTC
66 TCAAG-AAGATAGAGTTTGAAATCTCATTCGAATTGAGCTTCGCTTCATTGATTTGGTCTACTTC
* * * * * *
23537835 TCTATATCTCATC-AGAAAGATGACCGTCTTATTGTTTCAATCCACTTCTCTTTATCTTATTAAT
130 TCTATATCTCATCAAG-AAGATGACCGCCTTATTGTTTCAATCCACTTCTCTGTACCTCATCAAG
* * *
23537899 AAGATGATCATTTTATTGCTTTGACCCACTTCTCTATATCTCATC-AGAAAGATGGGGTTTGAAG
194 AAGATGACCATTTTATTGCTTTGACCCACTTCTCTATATCTCATCAAG-AAGATAGAGTTTGAAG
* * * * *
23537963 TCTTATTCGTATTGAGCTTCGCTTT-ATTGATTTGGTCTAGTTCTCTGCATCTCATCAGGAAGAT
258 TCTCATTCGAATTGAGCTTCG-TTTCATTGATTTGGTCTACTTCTCTACATCTCATCAAGAAGAT
*
23538027 GATCGCCTCATTATTTCAATC
322 GACCGCCTCATTATTTCAATC
* *
23538048 CACTTCTTTGTATCTCATTAGGAAGATGA
1 CACTTCTCTGTATCTCATCAGGAAGATGA
23538077 ATTTGGTCCA
Statistics
Matches: 320, Mismatches: 44, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
338 4 0.01
339 207 0.65
340 4 0.01
341 4 0.01
342 101 0.32
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (342 bp):
CACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCA
TCAAGAAGATAGAGTTTGAAATCTCATTCGAATTGAGCTTCGCTTCATTGATTTGGTCTACTTCT
CTATATCTCATCAAGAAGATGACCGCCTTATTGTTTCAATCCACTTCTCTGTACCTCATCAAGAA
GATGACCATTTTATTGCTTTGACCCACTTCTCTATATCTCATCAAGAAGATAGAGTTTGAAGTCT
CATTCGAATTGAGCTTCGTTTCATTGATTTGGTCTACTTCTCTACATCTCATCAAGAAGATGACC
GCCTCATTATTTCAATC
Found at i:23538133 original size:26 final size:27
Alignment explanation
Indices: 23538086--23538136 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
23538076 AATTTGGTCC
* *
23538086 ACTTCTCTGTTTCTCATTAAGAAGACT
1 ACTTCTCTGTATCTCATCAAGAAGACT
23538113 ACTTCTCTG-ATCTCATCAAGAAGA
1 ACTTCTCTGTATCTCATCAAGAAGA
23538137 TGACCGCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (27 bp):
ACTTCTCTGTATCTCATCAAGAAGACT
Found at i:23538178 original size:48 final size:48
Alignment explanation
Indices: 23538113--23538232 Score: 188
Period size: 48 Copynumber: 2.5 Consensus size: 48
23538103 TAAGAAGACT
* *
23538113 ACTTCTCTG-ATCTCATCAAGAAGATGACCGCCTCATTATTTTAATCC
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTATTTCAATCC
* *
23538160 ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTTATTGTTTCAATCC
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTATTTCAATCC
*
23538208 ACTTCTCTATATCTCATCAGGAAGA
1 ACTTCTCTGTATCTCATCAGGAAGA
23538233 CAGATTTGGT
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 9 0.13
48 58 0.87
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.34
Consensus pattern (48 bp):
ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTATTTCAATCC
Found at i:23538258 original size:37 final size:37
Alignment explanation
Indices: 23538205--23538306 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
23538195 ATTGTTTCAA
*
23538205 TCCACTTCTCTATATCTCATCAGGAAGACAGATTTGG
1 TCCACTTCTCTGTATCTCATCAGGAAGACAGATTTGG
* *
23538242 TCCACTTCTCTGTATCTTATCAGGAAGACGGATTTGG
1 TCCACTTCTCTGTATCTCATCAGGAAGACAGATTTGG
23538279 TCCACTTCTCTGTATCTCATCAGGAAGA
1 TCCACTTCTCTGTATCTCATCAGGAAGA
23538307 TGACCGCTTT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (37 bp):
TCCACTTCTCTGTATCTCATCAGGAAGACAGATTTGG
Found at i:23538300 original size:122 final size:120
Alignment explanation
Indices: 23538157--23538493 Score: 340
Period size: 123 Copynumber: 2.8 Consensus size: 120
23538147 ATTATTTTAA
*
23538157 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCCTTATTGTTTCAATCCACTTCTCTATATCT
1 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCCTTATTGTTTCAATCCACTTCTCTGTATCT
* * * *
23538222 CATCAGGAAGACAGATTTGGTCCACTTC-T-CTGTATCTTATCAGGAAGACGGATTTGG
66 CATCAGGAAGACAGATTTGGTCCACTTCGTATTG-AGCTT-T--GCAACACGGATTTGG
* * * *
23538279 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTT-GACCCACTTCTTTGTATC
1 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCCTTATTG-TTTCAATCCACTTCTCTGTATC
* * * * ** **
23538343 TCATCAAGAAGATAGGGTTTGAAGTCTTA-TTCGTATTGAGCTTTGCTTCATTGATTTGG
65 TCATCAGGAAGACA-GATTTG--GTC-CACTTCGTATTGAGCTTTGCAACACGGATTTGG
** * * * *
23538402 TTTACTTCTCTGTATCTTATGAGAAAGATGACTGCCTTATTGTTTCAATCCACTTCTCTGTATCT
1 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCCTTATTGTTTCAATCCACTTCTCTGTATCT
* *
23538467 CATCAGGAAGACGGATTTGGTTCACTT
66 CATCAGGAAGACAGATTTGGTCCACTT
23538494 TTCTACATCT
Statistics
Matches: 173, Mismatches: 33, Indels: 20
0.77 0.15 0.09
Matches are distributed among these distances:
119 1 0.01
120 4 0.02
122 75 0.43
123 78 0.45
125 7 0.04
126 6 0.03
127 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.38
Consensus pattern (120 bp):
TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCCTTATTGTTTCAATCCACTTCTCTGTATCT
CATCAGGAAGACAGATTTGGTCCACTTCGTATTGAGCTTTGCAACACGGATTTGG
Found at i:23538634 original size:42 final size:41
Alignment explanation
Indices: 23538549--23539193 Score: 646
Period size: 42 Copynumber: 15.7 Consensus size: 41
23538539 TGTAATTTGC
* * *
23538549 CCCATGATTGGGGTAAGAGATTG--GATGGCTGCAATCTGC
1 CCCATGATCGAGGTAAGAGATTGATGATGGCTGCAATCTGT
* * *
23538588 CCCATGATTGAGGTAAGAGATTGTATGATGGCTACAATATGT
1 CCCATGATCGAGGTAAGAGATTG-ATGATGGCTGCAATCTGT
*
23538630 CCCATGATCGAGGTAAGAGATTGGATGATGGCTACAATCTG-
1 CCCATGATCGAGGTAAGAGATT-GATGATGGCTGCAATCTGT
* * *
23538671 CTCCAT-AGTCGGGGTAAGAGATTGGATGATGGCTACAATCTAT
1 C-CCATGA-TCGAGGTAAGAGATT-GATGATGGCTGCAATCTGT
* * *
23538714 CCCATGAT-TAGGGTAAGAGATTGGATGATGGTTACAATCTGT
1 CCCATGATCGA-GGTAAGAGATT-GATGATGGCTGCAATCTGT
* * *
23538756 CCCATGATCGAGGTAAGAGATTG--GATGACTACAATCTGC
1 CCCATGATCGAGGTAAGAGATTGATGATGGCTGCAATCTGT
*
23538795 CCCATGATCGAGGTAAGAGATTGTATGATCGCTGCAATCTGT
1 CCCATGATCGAGGTAAGAGATTG-ATGATGGCTGCAATCTGT
* *
23538837 CCCATGATCTAGGTAAGAGATTGAATGATGGTTGCAATCTG-
1 CCCATGATCGAGGTAAGAGATTG-ATGATGGCTGCAATCTGT
* * *
23538878 CCCTATGATCGGGGTAAGAGATTGA--ATGGATGCAAT-TTT
1 CCC-ATGATCGAGGTAAGAGATTGATGATGGCTGCAATCTGT
* * * *
23538917 CTCCATAATCTAGGTAAGAGATTGGATGATGGCTACAATCTGC
1 C-CCATGATCGAGGTAAGAGATT-GATGATGGCTGCAATCTGT
*
23538960 CCCATGATC-AGGGTAAGAGATTGAATGATGGTTGCAATCTGT
1 CCCATGATCGA-GGTAAGAGATTG-ATGATGGCTGCAATCTGT
* *
23539002 CCCATGATC-AGGGTAAGAGATTG--GATGGTTGCAATCTGC
1 CCCATGATCGA-GGTAAGAGATTGATGATGGCTGCAATCTGT
* * *
23539041 CCCATGATCGACGTAAGAGATTGAATGATGGCTACAATCTGC
1 CCCATGATCGAGGTAAGAGATTG-ATGATGGCTGCAATCTGT
* *
23539083 CCCATGATCAAGGTAAGAGATTG--GATGGCTGCAATCTAT
1 CCCATGATCGAGGTAAGAGATTGATGATGGCTGCAATCTGT
*
23539122 CCCATGATCAAGGTAAGAGATTAGATGATGGCTGCAAT-T-T
1 CCCATGATCGAGGTAAGAGATT-GATGATGGCTGCAATCTGT
23539162 ACCTCATGATCTG-GGTAAGAGATTGGATGATG
1 -CC-CATGATC-GAGGTAAGAGATT-GATGATG
23539194 ATGTAACTTC
Statistics
Matches: 524, Mismatches: 50, Indels: 61
0.83 0.08 0.10
Matches are distributed among these distances:
38 1 0.00
39 155 0.30
40 7 0.01
41 12 0.02
42 343 0.65
43 6 0.01
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (41 bp):
CCCATGATCGAGGTAAGAGATTGATGATGGCTGCAATCTGT
Found at i:23538833 original size:81 final size:80
Alignment explanation
Indices: 23538530--23539191 Score: 621
Period size: 81 Copynumber: 8.1 Consensus size: 80
23538520 ACTTATTGGT
** * * * *
23538530 TTGGATGACTGTAATTTGCCCCATGATTGGGGTAAGAGATTG--GATGGCTGCAATCTGCCCCAT
1 TTGGATGACTACAATCTGCCCCATGATCGAGGTAAGAGATTGATGATGGCTGCAATCTGTCCCAT
*
23538593 GATTGAGGTAAGAGA
66 GATCGAGGTAAGAGA
* * * *
23538608 TTGTATGATGGCTACAATATGTCCCATGATCGAGGTAAGAGATTGGATGATGGCTACAATCTG-C
1 TTG---GATGACTACAATCTGCCCCATGATCGAGGTAAGAGATT-GATGATGGCTGCAATCTGTC
*
23538672 TCCAT-AGTCGGGGTAAGAGA
62 -CCATGA-TCGAGGTAAGAGA
** * * *
23538692 TTGGATGATGGCTACAATCTATCCCATGAT-TAGGGTAAGAGATTGGATGATGGTTACAATCTGT
1 TTGGATGA---CTACAATCTGCCCCATGATCGA-GGTAAGAGATT-GATGATGGCTGCAATCTGT
23538756 CCCATGATCGAGGTAAGAGA
61 CCCATGATCGAGGTAAGAGA
*
23538776 TTGGATGACTACAATCTGCCCCATGATCGAGGTAAGAGATTGTATGATCGCTGCAATCTGTCCCA
1 TTGGATGACTACAATCTGCCCCATGATCGAGGTAAGAGATTG-ATGATGGCTGCAATCTGTCCCA
*
23538841 TGATCTAGGTAAGAGA
65 TGATCGAGGTAAGAGA
** * * * * *
23538857 TTGAATGATGGTTGCAATCTGCCCTATGATCGGGGTAAGAGATTGA--ATGGATGCAAT-TTTCT
1 TTG---GATGACTACAATCTGCCCCATGATCGAGGTAAGAGATTGATGATGGCTGCAATCTGTC-
* *
23538919 CCATAATCTAGGTAAGAGA
62 CCATGATCGAGGTAAGAGA
*
23538938 TTGGATGATGGCTACAATCTGCCCCATGATC-AGGGTAAGAGATTGAATGATGGTTGCAATCTGT
1 TTGGATGA---CTACAATCTGCCCCATGATCGA-GGTAAGAGATTG-ATGATGGCTGCAATCTGT
23539002 CCCATGATC-AGGGTAAGAGA
61 CCCATGATCGA-GGTAAGAGA
** * * * *
23539022 TTGGATGGTTGCAATCTGCCCCATGATCGACGTAAGAGATTGAATGATGGCTACAATCTGCCCCA
1 TTGGATGACTACAATCTGCCCCATGATCGAGGTAAGAGATTG-ATGATGGCTGCAATCTGTCCCA
*
23539087 TGATCAAGGTAAGAGA
65 TGATCGAGGTAAGAGA
* * ** *
23539103 TTGGATGGCTGCAATCTATCCCATGATCAAGGTAAGAGATTAGATGATGGCTGCAAT-T-TACCT
1 TTGGATGACTACAATCTGCCCCATGATCGAGGTAAGAGATT-GATGATGGCTGCAATCTGT-CC-
23539166 CATGATCTG-GGTAAGAGA
63 CATGATC-GAGGTAAGAGA
23539184 TTGGATGA
1 TTGGATGA
23539192 TGATGTAACT
Statistics
Matches: 493, Mismatches: 56, Indels: 67
0.80 0.09 0.11
Matches are distributed among these distances:
78 7 0.01
80 7 0.01
81 294 0.60
82 6 0.01
83 5 0.01
84 169 0.34
85 5 0.01
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (80 bp):
TTGGATGACTACAATCTGCCCCATGATCGAGGTAAGAGATTGATGATGGCTGCAATCTGTCCCAT
GATCGAGGTAAGAGA
Found at i:23538865 original size:123 final size:123
Alignment explanation
Indices: 23538530--23539193 Score: 744
Period size: 123 Copynumber: 5.4 Consensus size: 123
23538520 ACTTATTGGT
* * * * *
23538530 TTGGATGACTGTAATTTGCCCCATGATTGGGGTAAGAGATT-G--GATGGCTGCAATCTGCCCCA
1 TTGGATGACTGCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGGCTACAATCTGCCCCA
* * * *
23538592 TGAT-TGAGGTAAGAGATTGTATGATGGCTACAATATGTCCCATGATCGAGGTAAGAGA
66 TGATCT-AGGTAAGAGATTGAATGATGGTTGCAATCTGTCCCATGATCGAGGTAAGAGA
* * * **
23538650 TTGGATGATGGCTACAATCTGCTCCAT-AGTCGGGGTAAGAGATTGGATGATGGCTACAATCTAT
1 TTGGATGA---CTGCAATCTGCCCCATGA-TCGAGGTAAGAGATTGGATGATGGCTACAATCTGC
* *
23538714 CCCATGAT-TAGGGTAAGAGATTGGATGATGGTTACAATCTGTCCCATGATCGAGGTAAGAGA
62 CCCATGATCTA-GGTAAGAGATTGAATGATGGTTGCAATCTGTCCCATGATCGAGGTAAGAGA
* * * * *
23538776 TTGGATGACTACAATCTGCCCCATGATCGAGGTAAGAGATTGTATGATCGCTGCAATCTGTCCCA
1 TTGGATGACTGCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGGCTACAATCTGCCCCA
*
23538841 TGATCTAGGTAAGAGATTGAATGATGGTTGCAATCTG-CCCTATGATCGGGGTAAGAGA
66 TGATCTAGGTAAGAGATTGAATGATGGTTGCAATCTGTCCC-ATGATCGAGGTAAGAGA
* * * * * *
23538899 TTGAATGGA-TGCAATTTTCTCCATAATCTAGGTAAGAGATTGGATGATGGCTACAATCTGCCCC
1 TTGGAT-GACTGCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGGCTACAATCTGCCCC
23538963 ATGATC-AGGGTAAGAGATTGAATGATGGTTGCAATCTGTCCCATGATC-AGGGTAAGAGA
65 ATGATCTA-GGTAAGAGATTGAATGATGGTTGCAATCTGTCCCATGATCGA-GGTAAGAGA
** * *
23539022 TTGGATGGTTGCAATCTGCCCCATGATCGACGTAAGAGATTGAATGATGGCTACAATCTGCCCCA
1 TTGGATGACTGCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGGCTACAATCTGCCCCA
* * * *
23539087 TGATCAAGGTAAGAGATTG---GATGGCTGCAATCTATCCCATGATCAAGGTAAGAGA
66 TGATCTAGGTAAGAGATTGAATGATGGTTGCAATCTGTCCCATGATCGAGGTAAGAGA
* * * *
23539142 TTAGATGATGGCTGCAATTTACCTCATGATCTG-GGTAAGAGATTGGATGATG
1 TT-G--GATGACTGCAATCTGCCCCATGATC-GAGGTAAGAGATTGGATGATG
23539194 ATGTAACTTC
Statistics
Matches: 473, Mismatches: 49, Indels: 41
0.84 0.09 0.07
Matches are distributed among these distances:
120 42 0.09
121 2 0.00
122 6 0.01
123 333 0.70
124 11 0.02
125 1 0.00
126 78 0.16
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (123 bp):
TTGGATGACTGCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGGCTACAATCTGCCCCA
TGATCTAGGTAAGAGATTGAATGATGGTTGCAATCTGTCCCATGATCGAGGTAAGAGA
Found at i:23539746 original size:98 final size:100
Alignment explanation
Indices: 23539623--23539863 Score: 296
Period size: 98 Copynumber: 2.5 Consensus size: 100
23539613 GTCTTTTATT
* * * *
23539623 ATACCGAGTTCGCCGTTGTGGCCTCAATCC-TTCCCATCACATCTTTTAAGGTATCAGGTTCGCC
1 ATACCGGGTTCGCCGTTGTGGCCTCAATCCATTCCCTTCAAATCTTTTAAGGTACCAGGTTCGCC
* *
23539687 GTTACGGGCTCAACCTTTCCCTTTAAATTTTCATGG
66 GTTACGGCCTCAACCTTTCCCTTCAAATTTTCAT-G
* * * *
23539723 A-A-CGGGTTCGCCGTTGTGGCCTC-ATCCATTTCCTTCATATC-TTTATGGTACCGGGTTCGCC
1 ATACCGGGTTCGCCGTTGTGGCCTCAATCCATTCCCTTCAAATCTTTTAAGGTACCAGGTTCGCC
* *
23539784 GTTATGGCCTCAACCTTTCCCTTCAAATTTTTATG
66 GTTACGGCCTCAACCTTTCCCTTCAAATTTTCATG
* * *
23539819 ATACCGGGTTCACCGTTATGGCCTCAA-CCTTTCCCTTCAAATCTT
1 ATACCGGGTTCGCCGTTGTGGCCTCAATCCATTCCCTTCAAATCTT
23539864 CATGTTTTCT
Statistics
Matches: 120, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
96 2 0.02
97 52 0.43
98 62 0.52
99 3 0.03
100 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.17, T:0.35
Consensus pattern (100 bp):
ATACCGGGTTCGCCGTTGTGGCCTCAATCCATTCCCTTCAAATCTTTTAAGGTACCAGGTTCGCC
GTTACGGCCTCAACCTTTCCCTTCAAATTTTCATG
Found at i:23539779 original size:49 final size:49
Alignment explanation
Indices: 23539624--23539863 Score: 263
Period size: 49 Copynumber: 4.9 Consensus size: 49
23539614 TCTTTTATTA
* * * * *
23539624 TACCGAGTTCGCCGTTGTGGCCTCAATCC-TTCCCATCACATCTTTTAAGG
1 TACCGGGTTCGCCGTTATGGCCTCAA-CCTTTCCCTTCAAATC-TTTATGG
* * * * *
23539674 TATCAGGTTCGCCGTTACGGGCTCAACCTTTCCCTTTAAAT-TTTCATGG
1 TACCGGGTTCGCCGTTATGGCCTCAACCTTTCCCTTCAAATCTTT-ATGG
* * * *
23539723 -AACGGGTTCGCCGTTGTGGCCTCATCCATTT-CCTTCATATCTTTATGG
1 TACCGGGTTCGCCGTTATGGCCTCAACC-TTTCCCTTCAAATCTTTATGG
* *
23539771 TACCGGGTTCGCCGTTATGGCCTCAACCTTTCCCTTCAAATTTTTATGA
1 TACCGGGTTCGCCGTTATGGCCTCAACCTTTCCCTTCAAATCTTTATGG
*
23539820 TACCGGGTTCACCGTTATGGCCTCAACCTTTCCCTTCAAATCTT
1 TACCGGGTTCGCCGTTATGGCCTCAACCTTTCCCTTCAAATCTT
23539864 CATGTTTTCT
Statistics
Matches: 158, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
48 38 0.24
49 91 0.58
50 29 0.18
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.35
Consensus pattern (49 bp):
TACCGGGTTCGCCGTTATGGCCTCAACCTTTCCCTTCAAATCTTTATGG
Found at i:23540411 original size:17 final size:17
Alignment explanation
Indices: 23540389--23540422 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
23540379 GAATGAAAAG
23540389 ATCGTTGGCTCATTAAT
1 ATCGTTGGCTCATTAAT
23540406 ATCGTTGGCTCATTAAT
1 ATCGTTGGCTCATTAAT
23540423 CGCTATTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (17 bp):
ATCGTTGGCTCATTAAT
Found at i:23540853 original size:10 final size:10
Alignment explanation
Indices: 23540833--23540880 Score: 64
Period size: 10 Copynumber: 4.8 Consensus size: 10
23540823 TTCTTTTACC
23540833 TTTTTTC-CT
1 TTTTTTCTCT
23540842 TTTTTTCTCT
1 TTTTTTCTCT
23540852 TTTTTT-TCCT
1 TTTTTTCT-CT
23540862 TTTTCTTCTCT
1 TTTT-TTCTCT
23540873 TTTTTTCT
1 TTTTTTCT
23540881 TTCTTTTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
9 8 0.23
10 18 0.51
11 8 0.23
12 1 0.03
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTTTCTCT
Found at i:23540856 original size:20 final size:21
Alignment explanation
Indices: 23540833--23540878 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
23540823 TTCTTTTACC
23540833 TTTTTTCCTTTTT-TTCTCTT
1 TTTTTTCCTTTTTCTTCTCTT
23540853 TTTTTTCCTTTTTCTTCTCTT
1 TTTTTTCCTTTTTCTTCTCTT
23540874 TTTTT
1 TTTTT
23540879 CTTTCTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTTCCTTTTTCTTCTCTT
Found at i:23540858 original size:12 final size:11
Alignment explanation
Indices: 23540833--23540889 Score: 66
Period size: 11 Copynumber: 5.4 Consensus size: 11
23540823 TTCTTTTACC
23540833 TTTTTTC-C-T
1 TTTTTTCTCTT
23540842 TTTTTTCTCTT
1 TTTTTTCTCTT
23540853 TTTTTTC-CTT
1 TTTTTTCTCTT
*
23540863 TTTCTTCTCTT
1 TTTTTTCTCTT
*
23540874 TTTTTCTTTCTT
1 TTTTT-TCTCTT
23540886 TTTT
1 TTTT
23540890 ATTTATTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
9 7 0.17
10 10 0.24
11 15 0.37
12 9 0.22
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTTCTCTT
Found at i:23540876 original size:30 final size:28
Alignment explanation
Indices: 23540820--23540888 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 28
23540810 TCGACCTCTC
23540820 CTTTTCTTTTACCTTTTTTCCTTTTTTTCT
1 CTTTT-TTTTACCTTTTTTCCTTTTTTT-T
*
23540850 CTTTTTTTT-CCTTTTTCTTCTCTTTTTTT
1 CTTTTTTTTACCTTTTT-TCCT-TTTTTTT
23540879 CTTTCTTTTT
1 CTTT-TTTTT
23540889 TATTTATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
28 7 0.20
29 12 0.34
30 16 0.46
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (28 bp):
CTTTTTTTTACCTTTTTTCCTTTTTTTT
Found at i:23540882 original size:19 final size:18
Alignment explanation
Indices: 23540832--23540887 Score: 67
Period size: 20 Copynumber: 2.9 Consensus size: 18
23540822 TTTCTTTTAC
*
23540832 CTTTTTTCCTTTTTTTCT
1 CTTTTTTTCTTTTTTTCT
23540850 CTTTTTTTTCCTTTTTCTTCT
1 C-TTTTTTT-CTTTTT-TTCT
23540871 CTTTTTTTCTTTCTTTT
1 CTTTTTTTCTTT-TTTT
23540888 TTATTTATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
18 1 0.03
19 12 0.36
20 15 0.45
21 5 0.15
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
CTTTTTTTCTTTTTTTCT
Found at i:23546627 original size:30 final size:30
Alignment explanation
Indices: 23546492--23546723 Score: 225
Period size: 30 Copynumber: 8.0 Consensus size: 30
23546482 ACGGGGTCGA
* *
23546492 AAAATG-AAGTTTTGGAGAA-TTT-GGGGTC
1 AAAATGTAA-TTTTGGAAAAGTTTAGGGGTT
* *
23546520 AAAATGTAATTTT-GAGAAA-TTTAGGGATC
1 AAAATGTAATTTTGGA-AAAGTTTAGGGGTT
* *
23546549 AAAATATAATTTTAGG-AAAGTTT-GGGGTC
1 AAAATGTAATTTT-GGAAAAGTTTAGGGGTT
* *
23546578 AAAATGTGATTTT---AAAGTTTAGGTGTT
1 AAAATGTAATTTTGGAAAAGTTTAGGGGTT
23546605 AAAATGTAATTTTGGAAAAGTTTAGGGGTT
1 AAAATGTAATTTTGGAAAAGTTTAGGGGTT
*
23546635 AAAATGTAATTTTGGAAAAGTGT-GGGGTT
1 AAAATGTAATTTTGGAAAAGTTTAGGGGTT
* * * *
23546664 AAAATATAATTTTAGAGAAGTTTAAGGGTT
1 AAAATGTAATTTTGGAAAAGTTTAGGGGTT
**
23546694 AAAATGTAATTTTTAAAAAGTTTAGGGGTT
1 AAAATGTAATTTTGGAAAAGTTTAGGGGTT
23546724 TTTTATGCAA
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
26 7 0.04
27 18 0.10
28 15 0.09
29 63 0.37
30 68 0.40
31 1 0.01
ACGTcount: A:0.38, C:0.01, G:0.25, T:0.37
Consensus pattern (30 bp):
AAAATGTAATTTTGGAAAAGTTTAGGGGTT
Found at i:23546713 original size:59 final size:59
Alignment explanation
Indices: 23546501--23546723 Score: 228
Period size: 59 Copynumber: 3.8 Consensus size: 59
23546491 AAAAATGAAG
* * * * *
23546501 TTTTGGAGAA-TTT-GGGGTCAAAATGTAATTTTGAGAAA-TTTAGGGATCAAAATATAA
1 TTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTTA-AAAGTTTAGGGGTTAAAATATAA
* * * *
23546558 TTTTAG-GAAAGTTT-GGGGTCAAAATGTGA-TTTT-AAAGTTTAGGTGTTAAAATGTAA
1 TTTTAGAG-AAGTTTAGGGGTTAAAATGTAATTTTTAAAAGTTTAGGGGTTAAAATATAA
* * * *
23546614 TTTTGGAAAAGTTTAGGGGTTAAAATGTAATTTTGGAAAAGTGT-GGGGTTAAAATATAA
1 TTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTT-TAAAAGTTTAGGGGTTAAAATATAA
*
23546673 TTTTAGAGAAGTTTAAGGGTTAAAATGTAATTTTTAAAAAGTTTAGGGGTT
1 TTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTT-AAAAGTTTAGGGGTT
23546724 TTTTATGCAA
Statistics
Matches: 136, Mismatches: 20, Indels: 17
0.79 0.12 0.10
Matches are distributed among these distances:
55 3 0.02
56 27 0.20
57 23 0.17
58 20 0.15
59 51 0.38
60 12 0.09
ACGTcount: A:0.36, C:0.01, G:0.25, T:0.38
Consensus pattern (59 bp):
TTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTTAAAAGTTTAGGGGTTAAAATATAA
Found at i:23547745 original size:18 final size:16
Alignment explanation
Indices: 23547700--23547750 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
23547690 GGTTTTGGGT
23547700 ATTGGGCTTGTTTTGTA
1 ATTGGGCTT-TTTTGTA
23547717 ATTGGGTCTTTTTTGTA
1 ATTGGG-CTTTTTTGTA
*
23547734 ACTTGGGC-CTTTTGTA
1 A-TTGGGCTTTTTTGTA
23547750 A
1 A
23547751 ATGGACATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
16 8 0.26
17 15 0.48
18 8 0.26
ACGTcount: A:0.14, C:0.10, G:0.25, T:0.51
Consensus pattern (16 bp):
ATTGGGCTTTTTTGTA
Found at i:23557625 original size:31 final size:31
Alignment explanation
Indices: 23557590--23557650 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
23557580 TACAATTGTA
* *
23557590 AAGTTAATTGTTTACTATTCATCAATTTAGT
1 AAGTTAATTGTTTACAATGCATCAATTTAGT
23557621 AAGTTAATTGTTTACAATGCATCAATTTAG
1 AAGTTAATTGTTTACAATGCATCAATTTAG
23557651 AGCTGTCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.44
Consensus pattern (31 bp):
AAGTTAATTGTTTACAATGCATCAATTTAGT
Found at i:23560610 original size:43 final size:43
Alignment explanation
Indices: 23560506--23560618 Score: 154
Period size: 43 Copynumber: 2.6 Consensus size: 43
23560496 ACGGGCCGGA
*
23560506 CACACGGGCATGTACCAGACCGTGTGTGTATATTGTTTTGAGG
1 CACACGGGCATGTACCAGACCGTGTGTGTACATTGTTTTGAGG
** * * *
23560549 CACACAAGCGTGTCCCAGACTGTGTGTGTACATTGTTTTGAGG
1 CACACGGGCATGTACCAGACCGTGTGTGTACATTGTTTTGAGG
* *
23560592 CACACGGGCATATGCCAGACCGTGTGT
1 CACACGGGCATGTACCAGACCGTGTGT
23560619 CATTAAAATA
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (43 bp):
CACACGGGCATGTACCAGACCGTGTGTGTACATTGTTTTGAGG
Found at i:23566249 original size:29 final size:29
Alignment explanation
Indices: 23566212--23566280 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
23566202 CGAGGAATTT
*
23566212 AGGGTCAAAATTGAAATTTTTAGATATTCG
1 AGGG-CAAAATGGAAATTTTTAGATATTCG
* * * *
23566242 AGGGCAAAATGGTAATTTTTGGATGTTTG
1 AGGGCAAAATGGAAATTTTTAGATATTCG
*
23566271 GGGGCAAAAT
1 AGGGCAAAAT
23566281 CATAATTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 29 0.88
30 4 0.12
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.33
Consensus pattern (29 bp):
AGGGCAAAATGGAAATTTTTAGATATTCG
Found at i:23566310 original size:59 final size:57
Alignment explanation
Indices: 23566247--23566450 Score: 185
Period size: 59 Copynumber: 3.5 Consensus size: 57
23566237 ATTCGAGGGC
* * *
23566247 AAAATGGTAATTTTTGGATGTTTGGGGGCAAAATCATAATTTTGGAGAAGTTTGGGGTT
1 AAAAT-GTAATTTTTGGAAGTTTGGGGCCAAAAT-GTAATTTTGGAGAAGTTTGGGGTT
** * ** **
23566306 AAAATGGGATTTTGGAGAAGTTTAAAGGCCAAAATGTAATTTTGGAGAAGTTTGGGGACC
1 AAAATGTAATTTTTG-GAAGTTT-GGGGCCAAAATGTAATTTTGGAGAAGTTTGGGG-TT
* * ** *
23566366 AAAATGTTATTTGTAAAAGTTT-GGGCTCAAAATGTAATTTTTGAGAAGTTTGGGGGTT
1 AAAATGTAATTTTTGGAAGTTTGGGGC-CAAAATGTAATTTTGGAGAAGTTT-GGGGTT
*
23566424 AAAATGTAATTTTTGCAAAGTTTGGGG
1 AAAATGTAATTTTTG-GAAGTTTGGGG
23566451 GTTAAAATTG
Statistics
Matches: 115, Mismatches: 23, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
57 3 0.03
58 42 0.37
59 49 0.43
60 21 0.18
ACGTcount: A:0.32, C:0.04, G:0.28, T:0.35
Consensus pattern (57 bp):
AAAATGTAATTTTTGGAAGTTTGGGGCCAAAATGTAATTTTGGAGAAGTTTGGGGTT
Found at i:23566452 original size:30 final size:30
Alignment explanation
Indices: 23566213--23566468 Score: 179
Period size: 30 Copynumber: 8.6 Consensus size: 30
23566203 GAGGAATTTA
* * *
23566213 GGGTCAAAATTGAAATTTTT-AGATA-TTCGA
1 GGGTCAAAA-TGTAATTTTTGAGA-AGTTTGG
*
23566243 GGG-CAAAATGGTAATTTTTG-GATGTTTGG
1 GGGTCAAAAT-GTAATTTTTGAGAAGTTTGG
* *
23566272 GGG-CAAAATCATAATTTTGGAGAAGTTT-G
1 GGGTCAAAAT-GTAATTTTTGAGAAGTTTGG
* ** * **
23566301 GGGTTAAAATGGGATTTTGGAGAAGTTTAA
1 GGGTCAAAATGTAATTTTTGAGAAGTTTGG
* * *
23566331 AGGCCAAAATGTAATTTTGGAGAAGTTTGG
1 GGGTCAAAATGTAATTTTTGAGAAGTTTGG
** * * *
23566361 GGACCAAAATGTTATTTGT-AAAAGTTT-G
1 GGGTCAAAATGTAATTTTTGAGAAGTTTGG
*
23566389 GGCTCAAAATGTAATTTTTGAGAAGTTTGG
1 GGGTCAAAATGTAATTTTTGAGAAGTTTGG
*
23566419 GGGTTAAAATGTAATTTTTGCA-AAGTTTGG
1 GGGTCAAAATGTAATTTTTG-AGAAGTTTGG
* *
23566449 GGGTTAAAATTGGAATTTTT
1 GGGTCAAAA-TGTAATTTTT
23566469 AAATATTCGA
Statistics
Matches: 182, Mismatches: 34, Indels: 19
0.77 0.14 0.08
Matches are distributed among these distances:
28 17 0.09
29 68 0.37
30 87 0.48
31 10 0.05
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.36
Consensus pattern (30 bp):
GGGTCAAAATGTAATTTTTGAGAAGTTTGG
Found at i:23568242 original size:29 final size:30
Alignment explanation
Indices: 23568209--23568417 Score: 155
Period size: 30 Copynumber: 7.0 Consensus size: 30
23568199 TTGGATATTC
* *
23568209 GAGGG-TAAAATCATAATTTTGGAGAAGTTT
1 GAGGGTTAAAAT-GTAATTTTTGAGAAGTTT
** *
23568239 -AGGGACCAAAATGTAATTTTGTTA-AA-TTT
1 GAGGG-TTAAAATGTAATTTT-TGAGAAGTTT
*
23568268 -TGGGTTCAAAATGTAATTTTTGAGAAGTTT
1 GAGGGTT-AAAATGTAATTTTTGAGAAGTTT
* *
23568298 GGGGGTTAAAATATAATTTTTGAGAAGTTT
1 GAGGGTTAAAATGTAATTTTTGAGAAGTTT
* * * *
23568328 GGGGGTCAAAATGTATTTTTTGTGAAGTTT
1 GAGGGTTAAAATGTAATTTTTGAGAAGTTT
* *
23568358 AAGGG-TAAAGTGTAATTTTTGAGAAGTTT
1 GAGGGTTAAAATGTAATTTTTGAGAAGTTT
* * *
23568387 -AGGGGTCAAAATGTGACTTTTT-AGGAGTTT
1 GA-GGGTTAAAATGT-AATTTTTGAGAAGTTT
23568417 G
1 G
23568418 GGGACCTCTT
Statistics
Matches: 144, Mismatches: 24, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
28 3 0.02
29 48 0.33
30 76 0.53
31 17 0.12
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.39
Consensus pattern (30 bp):
GAGGGTTAAAATGTAATTTTTGAGAAGTTT
Found at i:23568309 original size:59 final size:59
Alignment explanation
Indices: 23568222--23568400 Score: 200
Period size: 59 Copynumber: 3.0 Consensus size: 59
23568212 GGTAAAATCA
* ** * * *
23568222 TAATTTTGGAGAAGTTTAGGGACCAAAATGTAATTTTGTTA-AA-TTTTGGGTTCAAAATG
1 TAATTTTTGAGAAGTTTAGGG-GTAAAATGTAATTTT-TGAGAAGTTTAGGGGTCAAAATG
* * *
23568281 TAATTTTTGAGAAGTTTGGGGGTTAAAATATAATTTTTGAGAAGTTTGGGGGTCAAAATG
1 TAATTTTTGAGAAGTTTAGGGG-TAAAATGTAATTTTTGAGAAGTTTAGGGGTCAAAATG
* * * *
23568341 TATTTTTTGTGAAGTTTAAGGGTAAAGTGTAATTTTTGAGAAGTTTAGGGGTCAAAATG
1 TAATTTTTGAGAAGTTTAGGGGTAAAATGTAATTTTTGAGAAGTTTAGGGGTCAAAATG
23568400 T
1 T
23568401 GACTTTTTAG
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
58 2 0.02
59 68 0.67
60 32 0.31
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.40
Consensus pattern (59 bp):
TAATTTTTGAGAAGTTTAGGGGTAAAATGTAATTTTTGAGAAGTTTAGGGGTCAAAATG
Found at i:23568324 original size:89 final size:90
Alignment explanation
Indices: 23568214--23568398 Score: 232
Period size: 89 Copynumber: 2.1 Consensus size: 90
23568204 TATTCGAGGG
* *
23568214 TAAAATCATAATTTTGGAGAAGTTTAGGGACCAAAATGTA-ATTTTGTTAAATTT-TGGGTTCAA
1 TAAAATCATAATTTTGGAGAAGTTTAGGGACCAAAATGTATATTTTGTGAAATTTAAGGG-T-AA
*
23568277 AATGTAATTTTTGAGAAGTTTGGGGGT
64 AATGTAATTTTTGAGAAGTTTAGGGGT
* * ** * * *
23568304 TAAAAT-ATAATTTTTGAGAAGTTTGGGGGTCAAAATGTATTTTTTGTGAAGTTTAAGGGTAAAG
1 TAAAATCATAATTTTGGAGAAGTTTAGGGACCAAAATGTATATTTTGTGAAATTTAAGGGTAAAA
23568368 TGTAATTTTTGAGAAGTTTAGGGGT
66 TGTAATTTTTGAGAAGTTTAGGGGT
*
23568393 CAAAAT
1 TAAAAT
23568399 GTGACTTTTT
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
89 61 0.74
90 18 0.22
91 3 0.04
ACGTcount: A:0.34, C:0.03, G:0.24, T:0.39
Consensus pattern (90 bp):
TAAAATCATAATTTTGGAGAAGTTTAGGGACCAAAATGTATATTTTGTGAAATTTAAGGGTAAAA
TGTAATTTTTGAGAAGTTTAGGGGT
Found at i:23568420 original size:29 final size:30
Alignment explanation
Indices: 23568222--23568400 Score: 202
Period size: 30 Copynumber: 6.0 Consensus size: 30
23568212 GGTAAAATCA
* **
23568222 TAATTTTGGAGAAGTTTAGGGACCAAAATG
1 TAATTTTTGAGAAGTTTAGGGGTCAAAATG
* * *
23568252 TAATTTTGTTA-AA-TTTTGGGTTCAAAATG
1 TAATTTT-TGAGAAGTTTAGGGGTCAAAATG
* * *
23568281 TAATTTTTGAGAAGTTTGGGGGTTAAAATA
1 TAATTTTTGAGAAGTTTAGGGGTCAAAATG
*
23568311 TAATTTTTGAGAAGTTTGGGGGTCAAAATG
1 TAATTTTTGAGAAGTTTAGGGGTCAAAATG
* * * *
23568341 TATTTTTTGTGAAGTTTAAGGGT-AAAGTG
1 TAATTTTTGAGAAGTTTAGGGGTCAAAATG
23568370 TAATTTTTGAGAAGTTTAGGGGTCAAAATG
1 TAATTTTTGAGAAGTTTAGGGGTCAAAATG
23568400 T
1 T
23568401 GACTTTTTAG
Statistics
Matches: 124, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
28 2 0.02
29 47 0.38
30 74 0.60
31 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.40
Consensus pattern (30 bp):
TAATTTTTGAGAAGTTTAGGGGTCAAAATG
Found at i:23569186 original size:29 final size:31
Alignment explanation
Indices: 23569129--23569191 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
23569119 ATGAAAATGT
* * *
23569129 AATTTTTGAGAAATTTGGGGGTTAAAATTGA
1 AATTTTTGAGAAATTCGGGGGTCAAAATTAA
*
23569160 AATTTTT-AGATATTCGGGGG-CAAAATTAA
1 AATTTTTGAGAAATTCGGGGGTCAAAATTAA
23569189 AAT
1 AAT
23569192 GTGACCCTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 10 0.36
30 11 0.39
31 7 0.25
ACGTcount: A:0.38, C:0.03, G:0.22, T:0.37
Consensus pattern (31 bp):
AATTTTTGAGAAATTCGGGGGTCAAAATTAA
Found at i:23570307 original size:19 final size:20
Alignment explanation
Indices: 23570283--23570325 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
23570273 CTAAGACAGG
23570283 TATAATAAATA-TATATTAA
1 TATAATAAATATTATATTAA
23570302 TATAATAAATATTATATTAA
1 TATAATAAATATTATATTAA
23570322 TATA
1 TATA
23570326 TATTTTAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TATAATAAATATTATATTAA
Found at i:23570313 original size:15 final size:15
Alignment explanation
Indices: 23570285--23570329 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
23570275 AAGACAGGTA
23570285 TAATA-AATATATAT
1 TAATATAATATATAT
*
23570299 TAATATAATAAATAT
1 TAATATAATATATAT
23570314 T-ATATTAATATATAT
1 TAATA-TAATATATAT
23570329 T
1 T
23570330 TTAGAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 8 0.30
15 19 0.70
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATATAATATATAT
Found at i:23571649 original size:209 final size:208
Alignment explanation
Indices: 23571285--23571958 Score: 874
Period size: 209 Copynumber: 3.3 Consensus size: 208
23571275 CTTGATCTTC
* * * * * *
23571285 TTCTCTGTACCTCATCAAGAAGATGACCGCTTCATTGCTTCGACCTACTTCTCTGTATCTCATCA
1 TTCTCTGTATCTCATCAAGAAGACGACCACTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCA
* * * * * * *
23571350 GGAAGATAGGGGTTTTGAAGCTTCACTCGCA-T---TTTT-CTTTATTTGATTTGGTCTACTTCT
66 GGAAGCT-GGGG-TTCGAAGTTTCGCTCACATTGAGTTTTGTTTTA-TTGATTTGGTATACTTCT
* * *
23571410 CTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCTGCTTCTTTGTATCTCATCAGGA
128 CTGTATCTCATCAGGAAGATGA-CGCATCACTTGTTTTAATCCGCTTCTCTGTATCTCATTAGGA
23571475 AGACGGATTTGGTCCAT
192 AGACGGATTTGGTCCAT
*
23571492 TTCTCTGTGTCTCATC-AGAAAGACGACCACTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
1 TTCTCTGTATCTCATCAAG-AAGACGACCACTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
23571556 AGGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGTTTTGTTTTATTGATTTGGTATACTTCTCT
65 AGGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGTTTTGTTTTATTGATTTGGTATACTTCTCT
23571621 GTATCTCATCAGGAAGATGACTGCATCACTTGTTTTAATCCGCTTCTCTGTATCTCATTAGGAAG
130 GTATCTCATCAGGAAGATGAC-GCATCACTTGTTTTAATCCGCTTCTCTGTATCTCATTAGGAAG
23571686 ACGGATTTGGTCCACT
194 ACGGATTTGGTCCA-T
* * * *
23571702 TT-TTTGTGTCTCATCAAGAAGACGACCGCTTTATTGCTTCGACCCGCTTCTCAGTATCTCATCA
1 TTCTCTGTATCTCATCAAGAAGACGACCACTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCA
*
23571766 GGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGTTTTGTTTCATTGATTTGGTATACTTCTC--
66 GGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGTTTTGTTTTATTGATTTGGTATACTTCTCTG
** * * * * * *
23571829 -A--TCAAAAGGATGAT--CGCATCACTTGTTATAATCCACTTCCCTATATCTCATTAGGAAGAT
131 TATCTCATCAGGAAGATGACGCATCACTTGTTTTAATCCGCTTCTCTGTATCTCATTAGGAAGAC
*
23571889 GGATTTGGTCCAC
196 GGATTTGGTCCAT
* * *
23571902 TTCTCTGTATCTCATCAGGAAGACGACCATTTTATTGCTTTGACCTGCTTCTC-GTAT
1 TTCTCTGTATCTCATCAAGAAGACGACCACTTTATTGCTTCGACCTGCTTCTCAGTAT
23571959 GCTTCAATCT
Statistics
Matches: 420, Mismatches: 37, Indels: 27
0.87 0.08 0.06
Matches are distributed among these distances:
200 6 0.01
201 95 0.23
202 1 0.00
204 10 0.02
205 14 0.03
206 8 0.02
207 61 0.15
208 1 0.00
209 215 0.51
210 9 0.02
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (208 bp):
TTCTCTGTATCTCATCAAGAAGACGACCACTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCA
GGAAGCTGGGGTTCGAAGTTTCGCTCACATTGAGTTTTGTTTTATTGATTTGGTATACTTCTCTG
TATCTCATCAGGAAGATGACGCATCACTTGTTTTAATCCGCTTCTCTGTATCTCATTAGGAAGAC
GGATTTGGTCCAT
Found at i:23581833 original size:29 final size:29
Alignment explanation
Indices: 23581770--23581836 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
23581760 TCAAAATTGA
* **
23581770 AATTTTTGGATATTCGGCGGTAAAATGGT
1 AATTTTTGGATATTCGACGGTAAAATCAT
*
23581799 AATTTTTGGATGTTCGACGGTAAAATCAT
1 AATTTTTGGATATTCGACGGTAAAATCAT
23581828 -ATTTTTGGA
1 AATTTTTGGA
23581837 GAAGTTTGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 9 0.26
29 25 0.74
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.40
Consensus pattern (29 bp):
AATTTTTGGATATTCGACGGTAAAATCAT
Found at i:23581913 original size:30 final size:30
Alignment explanation
Indices: 23581830--23582094 Score: 215
Period size: 30 Copynumber: 8.9 Consensus size: 30
23581820 AAAATCATAT
* * **
23581830 TTTTGGAGAAGTTT-GAGGTCAAAATGGGA
1 TTTTAGAGAAGTTTAGGGGTCAAAATGTAA
23581859 TTTTAGAGAAGTTT-GGAGGTCAAAATGTAA
1 TTTTAGAGAAGTTTAGG-GGTCAAAATGTAA
**
23581889 TTTTAGAGAAGTTTAGGGACCAAAATGTAA
1 TTTTAGAGAAGTTTAGGGGTCAAAATGTAA
* *
23581919 TTTT-GTAAAAGTTTAGGGGTTAAAATGTAA
1 TTTTAG-AGAAGTTTAGGGGTCAAAATGTAA
* * *
23581949 TTTTTGAGAAGTTTGGGGGT-TAAATGTAA
1 TTTTAGAGAAGTTTAGGGGTCAAAATGTAA
* * *
23581978 TTTTTGCA-AAGCTT-GAGGGTTAAAATGTAA
1 TTTTAG-AGAAGTTTAG-GGGTCAAAATGTAA
* **
23582008 TTTTTGAGAAGTTCGGGGGTC-AAATGTAA
1 TTTTAGAGAAGTTTAGGGGTCAAAATGTAA
* * *
23582037 TTTTTACA-AAGTTTAGGGGTTAAAATATAA
1 -TTTTAGAGAAGTTTAGGGGTCAAAATGTAA
* *
23582067 TTTTTGTA-AAGTTTAGGTGTCAAAATGT
1 TTTTAG-AGAAGTTTAGGGGTCAAAATGT
23582095 GACTTTTTAG
Statistics
Matches: 195, Mismatches: 29, Indels: 23
0.79 0.12 0.09
Matches are distributed among these distances:
28 1 0.01
29 61 0.31
30 129 0.66
31 4 0.02
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.37
Consensus pattern (30 bp):
TTTTAGAGAAGTTTAGGGGTCAAAATGTAA
Found at i:23582003 original size:59 final size:59
Alignment explanation
Indices: 23581828--23582094 Score: 249
Period size: 59 Copynumber: 4.5 Consensus size: 59
23581818 GTAAAATCAT
* ** * *
23581828 ATTTTTGGAGAAGTTT-GAGGTCAAAATGGGATTTTAG-AGAAGTTT-GGAGGTCAAAATGTA
1 ATTTTT-GAGAAGTTTGGGGGT-AAAATGTAATTTTTGCA-AAGTTTAGG-GGTTAAAATGTA
* *** *
23581888 ATTTTAGAGAAGTTTAGGGACCAAAATGTAA-TTTTGTAAAAGTTTAGGGGTTAAAATGTA
1 ATTTTTGAGAAGTTT-GGGGGTAAAATGTAATTTTTG-CAAAGTTTAGGGGTTAAAATGTA
* *
23581948 ATTTTTGAGAAGTTTGGGGGTTAAATGTAATTTTTGCAAAGCTT-GAGGGTTAAAATGTA
1 ATTTTTGAGAAGTTTGGGGGTAAAATGTAATTTTTGCAAAGTTTAG-GGGTTAAAATGTA
* * * *
23582007 ATTTTTGAGAAGTTCGGGGGTCAAATGTAATTTTTACAAAGTTTAGGGGTTAAAATATA
1 ATTTTTGAGAAGTTTGGGGGTAAAATGTAATTTTTGCAAAGTTTAGGGGTTAAAATGTA
* *
23582066 ATTTTTGTA-AAGTTTAGGTGTCAAAATGT
1 ATTTTTG-AGAAGTTTGGGGGT-AAAATGT
23582095 GACTTTTTAG
Statistics
Matches: 172, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
58 1 0.01
59 111 0.65
60 56 0.33
61 4 0.02
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (59 bp):
ATTTTTGAGAAGTTTGGGGGTAAAATGTAATTTTTGCAAAGTTTAGGGGTTAAAATGTA
Found at i:23583223 original size:19 final size:20
Alignment explanation
Indices: 23583199--23583236 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
23583189 AAGACAGGTA
23583199 TAATAAATA-TATATTAATG
1 TAATAAATATTATATTAATG
23583218 TAATAAATATTATATTAAT
1 TAATAAATATTATATTAAT
23583237 ATATATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (20 bp):
TAATAAATATTATATTAATG
Found at i:23583227 original size:15 final size:15
Alignment explanation
Indices: 23583204--23583243 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
23583194 AGGTATAATA
23583204 AATATATATTA-ATGT
1 AATATATATTATAT-T
*
23583219 AATAAATATTATATT
1 AATATATATTATATT
23583234 AATATATATT
1 AATATATATT
23583244 TTAGAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 20 0.91
16 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
AATATATATTATATT
Found at i:23586567 original size:43 final size:43
Alignment explanation
Indices: 23586494--23586597 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 43
23586484 ACACATGGGT
* *
23586494 GTGTACCAGACCGTGTGTGTATATTATTTTGAGGCTCACAAAC
1 GTGTACCAGACCGTGTGTGTACATTATTTTGAGGCACACAAAC
* * * * *
23586537 GTGTCCCAGACTGTGTGTGTACATTGTTTTGAGGCACACGAGC
1 GTGTACCAGACCGTGTGTGTACATTATTTTGAGGCACACAAAC
*
23586580 GTGTGCCAGACCGTGTGT
1 GTGTACCAGACCGTGTGT
23586598 CATTAAAATA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (43 bp):
GTGTACCAGACCGTGTGTGTACATTATTTTGAGGCACACAAAC
Found at i:23594503 original size:23 final size:23
Alignment explanation
Indices: 23594477--23594521 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
23594467 ACAGTTGTAA
*
23594477 AGTTAATTGTTTACTATTCATCT
1 AGTTAATTGTTTACTATGCATCT
23594500 AGTTAATTGTTTACTATGCATC
1 AGTTAATTGTTTACTATGCATC
23594522 AATTTTGATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.13, G:0.11, T:0.49
Consensus pattern (23 bp):
AGTTAATTGTTTACTATGCATCT
Found at i:23604306 original size:28 final size:28
Alignment explanation
Indices: 23604286--23604352 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
23604276 ATTTGTTTTA
23604286 AAATTAAATTTGTTTTAAATTTGAATTT
1 AAATTAAATTTGTTTTAAATTTGAATTT
* ** *
23604314 AATTTAAATTTGGATTAAATTTAAATTT
1 AAATTAAATTTGTTTTAAATTTGAATTT
**
23604342 GGATTAAATTT
1 AAATTAAATTT
23604353 AAAATTATTA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (28 bp):
AAATTAAATTTGTTTTAAATTTGAATTT
Found at i:23604312 original size:17 final size:17
Alignment explanation
Indices: 23604271--23604325 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
23604261 ATCAAACCAT
23604271 TTTGAATTTGTTTTAAA
1 TTTGAATTTGTTTTAAA
* *
23604288 ATTAAATTTGTTTTAAA
1 TTTGAATTTGTTTTAAA
**
23604305 TTTGAATTTAATTTAAA
1 TTTGAATTTGTTTTAAA
23604322 TTTG
1 TTTG
23604326 GATTAAATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTGAATTTGTTTTAAA
Found at i:23604320 original size:34 final size:34
Alignment explanation
Indices: 23604271--23604359 Score: 88
Period size: 34 Copynumber: 2.6 Consensus size: 34
23604261 ATCAAACCAT
** ***
23604271 TTTGAATTTGTTTTAAAATTAAATTTGTTTTAAA
1 TTTGAATTTAATTTAAAATTAAATTAAATTTAAA
* **
23604305 TTTGAATTTAATTTAAATTTGGATTAAATTTAAA
1 TTTGAATTTAATTTAAAATTAAATTAAATTTAAA
* *
23604339 TTTGGATTAAATTTAAAATTA
1 TTTGAATTTAATTTAAAATTA
23604360 TTATAAATTC
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (34 bp):
TTTGAATTTAATTTAAAATTAAATTAAATTTAAA
Found at i:23604334 original size:17 final size:17
Alignment explanation
Indices: 23604299--23604355 Score: 96
Period size: 17 Copynumber: 3.4 Consensus size: 17
23604289 TTAAATTTGT
* *
23604299 TTTAAATTTGAATTTAA
1 TTTAAATTTGGATTAAA
23604316 TTTAAATTTGGATTAAA
1 TTTAAATTTGGATTAAA
23604333 TTTAAATTTGGATTAAA
1 TTTAAATTTGGATTAAA
23604350 TTTAAA
1 TTTAAA
23604356 ATTATTATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 38 1.00
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (17 bp):
TTTAAATTTGGATTAAA
Found at i:23604473 original size:20 final size:21
Alignment explanation
Indices: 23604432--23604473 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
23604422 ATGTTCATTT
*
23604432 ACAAATCCTTGACCCAATTAC
1 ACAAATCCTTAACCCAATTAC
*
23604453 ACAAGTCCTTAACCC-ATTAC
1 ACAAATCCTTAACCCAATTAC
23604473 A
1 A
23604474 TATTAAACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.38, C:0.33, G:0.05, T:0.24
Consensus pattern (21 bp):
ACAAATCCTTAACCCAATTAC
Found at i:23605006 original size:18 final size:16
Alignment explanation
Indices: 23604983--23605025 Score: 68
Period size: 18 Copynumber: 2.6 Consensus size: 16
23604973 AGCATTAATG
23604983 ATAATATTAATAATAA
1 ATAATATTAATAATAA
23604999 GTATAATATTAATAATAA
1 --ATAATATTAATAATAA
23605017 ATAATATTA
1 ATAATATTA
23605026 GTATTAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 9 0.36
18 16 0.64
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (16 bp):
ATAATATTAATAATAA
Found at i:23616525 original size:40 final size:41
Alignment explanation
Indices: 23616469--23616617 Score: 131
Period size: 40 Copynumber: 3.4 Consensus size: 41
23616459 ATTTTCCTAT
23616469 CCTCTTGAAATTGAAGTAGAGCTGGATAACAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAGAGCTGGATAACAAGCCTTCGTC
** * * *
23616510 CCTC-TGAAATTGAAGTAAGAGCAAGATGAAGCACCGACATCTTTTCCTAT
1 CCTCTTGAAATTGAAGT-AGAGCTGGAT-AA-CA-AG-C--C--TTCGT-C
*
23616560 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAGAGCTGGATAACAAGCCTTCGTC
*
23616601 CCTC-TGGAATTGAAGTA
1 CCTCTTGAAATTGAAGTA
23616618 AGAGTAAGAT
Statistics
Matches: 85, Mismatches: 12, Indels: 23
0.71 0.10 0.19
Matches are distributed among these distances:
40 24 0.28
41 16 0.19
42 6 0.07
43 2 0.02
44 2 0.02
45 1 0.01
46 1 0.01
47 2 0.02
48 2 0.02
49 6 0.07
50 11 0.13
51 12 0.14
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (41 bp):
CCTCTTGAAATTGAAGTAGAGCTGGATAACAAGCCTTCGTC
Found at i:23616697 original size:92 final size:92
Alignment explanation
Indices: 23616450--23617175 Score: 1181
Period size: 92 Copynumber: 7.9 Consensus size: 92
23616440 GATCAGATCA
*
23616450 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGCTGGATAACAAGCCTTCGTCCCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
23616515 GAAATTGAAGTAAGAGCAAGATGAAGC
66 GAAATTGAAGTAAGAGCAAGATGAAGC
*
23616542 ACCGACATC-TTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
* *
23616606 GGAATTGAAGTAAGAGTAAGATGAAGC
66 GAAATTGAAGTAAGAGCAAGATGAAGC
* * *
23616633 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGATGGATATCAACCCTTCGTCCCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
*
23616698 GAAATTTAAGTAAGAGCAAGATGAAGC
66 GAAATTGAAGTAAGAGCAAGATGAAGC
* * *
23616725 ACCGACATC-TTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCTCACT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
*
23616789 GGAATTGAAGTAAGAGCAAGATGAAGC
66 GAAATTGAAGTAAGAGCAAGATGAAGC
* *
23616816 ACCGACATC-TTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCTCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
* *
23616880 GGAATTGAAGTAAGAGAAAGATGAAGC
66 GAAATTGAAGTAAGAGCAAGATGAAGC
* * *
23616907 ACCAACATCATTTTCCTATCCTCTTTAAATTGAAGTAAAGCTGGATATCAAGCCTTCGTCTCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
*
23616972 GAAATTGAAGTAAGAGTAAGATGAAGC
66 GAAATTGAAGTAAGAGCAAGATGAAGC
* * * *
23616999 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGCTTTTGTCTCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
* *
23617064 GAAGTTGAAGTAAGAGCAAGATGAAGG
66 GAAATTGAAGTAAGAGCAAGATGAAGC
*
23617091 ACCAACATCATTCTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
23617156 GAAATTGAA-TAAGAGCAAGA
66 GAAATTGAAGTAAGAGCAAGA
23617176 CGAAACCTCG
Statistics
Matches: 594, Mismatches: 38, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
91 270 0.45
92 324 0.55
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (92 bp):
ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
GAAATTGAAGTAAGAGCAAGATGAAGC
Found at i:23616758 original size:183 final size:184
Alignment explanation
Indices: 23616450--23617175 Score: 1181
Period size: 183 Copynumber: 4.0 Consensus size: 184
23616440 GATCAGATCA
*
23616450 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGCTGGATAACAAGCCTTCGTCCCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
*
23616515 GAAATTGAAGTAAGAGCAAGATGAAGCACCGACATC-TTTTCCTATCCTCTTGAAATTGAAGTAA
66 GAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAA
* *
23616579 AGCTGGATAACAAGCCTTCGTCCCTCTGGAATTGAAGTAAGAGTAAGATGAAGC
131 AGCTGGATAACAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGC
* * *
23616633 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGATGGATATCAACCCTTCGTCCCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
* *
23616698 GAAATTTAAGTAAGAGCAAGATGAAGCACCGACATC-TTTTCCTATCCTCTTGAAATTGAAGTAA
66 GAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAA
* * *
23616762 AGCTGGATAACAAGCCTTCGTCTCACTGGAATTGAAGTAAGAGCAAGATGAAGC
131 AGCTGGATAACAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGC
* *
23616816 ACCGACATC-TTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCTCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
* * *
23616880 GGAATTGAAGTAAGAGAAAGATGAAGCACCAACATCATTTTCCTATCCTCTTTAAATTGAAGTAA
66 GAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAA
* * *
23616945 AGCTGGATATCAAGCCTTCGTCTCTCTGAAATTGAAGTAAGAGTAAGATGAAGC
131 AGCTGGATAACAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGC
* * * *
23616999 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGCTTTTGTCTCTCT
1 ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
* * *
23617064 GAAGTTGAAGTAAGAGCAAGATGAAGGACCAACATCATTCTCCTATCCTCTTGAAATTGAAGTAA
66 GAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAA
23617129 AGCTGGATAACAAGCCTTCGTCCCTCTGAAATTGAA-TAAGAGCAAGA
131 AGCTGGATAACAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGA
23617176 CGAAACCTCG
Statistics
Matches: 506, Mismatches: 35, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
182 83 0.16
183 278 0.55
184 145 0.29
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (184 bp):
ACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCT
GAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAA
AGCTGGATAACAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGC
Found at i:23617468 original size:28 final size:28
Alignment explanation
Indices: 23617436--23617520 Score: 80
Period size: 28 Copynumber: 3.0 Consensus size: 28
23617426 CAATCAAACC
* **
23617436 ATTTTGAATTTGTTTTTAAATTAAATTT
1 ATTTTAAATTTGAATTTAAATTAAATTT
*
23617464 ATTTTAAATTTGAATTTAATTTAAATTT
1 ATTTTAAATTTGAATTTAAATTAAATTT
*** * **
23617492 GGATTAAATTTAAATTTGGATTAAATTT
1 ATTTTAAATTTGAATTTAAATTAAATTT
23617520 A
1 A
23617521 AAATTATTAT
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (28 bp):
ATTTTAAATTTGAATTTAAATTAAATTT
Found at i:23617479 original size:17 final size:17
Alignment explanation
Indices: 23617450--23617522 Score: 85
Period size: 17 Copynumber: 4.4 Consensus size: 17
23617440 TGAATTTGTT
* *
23617450 TTTAAA-TTAAATTTAT
1 TTTAAATTTGAATTTAA
23617466 TTTAAATTTGAATTTAA
1 TTTAAATTTGAATTTAA
* *
23617483 TTTAAATTTGGATTAAA
1 TTTAAATTTGAATTTAA
* *
23617500 TTTAAATTTGGATTAAA
1 TTTAAATTTGAATTTAA
23617517 TTTAAA
1 TTTAAA
23617523 ATTATTATAA
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
16 6 0.12
17 46 0.88
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (17 bp):
TTTAAATTTGAATTTAA
Found at i:23617640 original size:20 final size:21
Alignment explanation
Indices: 23617599--23617640 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
23617589 ATGTTCATTT
*
23617599 ACAAATCCTTGACCCAATTAC
1 ACAAATCCTTAACCCAATTAC
*
23617620 ACAAGTCCTTAACCC-ATTAC
1 ACAAATCCTTAACCCAATTAC
23617640 A
1 A
23617641 TATTAAACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.38, C:0.33, G:0.05, T:0.24
Consensus pattern (21 bp):
ACAAATCCTTAACCCAATTAC
Found at i:23618287 original size:18 final size:16
Alignment explanation
Indices: 23618264--23618306 Score: 68
Period size: 18 Copynumber: 2.6 Consensus size: 16
23618254 AGCATTAACG
23618264 ATAATATTAATAATAA
1 ATAATATTAATAATAA
23618280 GTATAATATTAATAATAA
1 --ATAATATTAATAATAA
23618298 ATAATATTA
1 ATAATATTA
23618307 GTATTAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 9 0.36
18 16 0.64
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (16 bp):
ATAATATTAATAATAA
Found at i:23618387 original size:14 final size:14
Alignment explanation
Indices: 23618350--23618387 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
23618340 AATAACAATA
23618350 AATATTGTTAATAGT
1 AATATT-TTAATAGT
23618365 AA-ATGTTTAATAGT
1 AATAT-TTTAATAGT
23618379 AATATTTTA
1 AATATTTTA
23618388 TTAATAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (14 bp):
AATATTTTAATAGT
Found at i:23618988 original size:16 final size:15
Alignment explanation
Indices: 23618958--23618992 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
23618948 GAGTTTTTTT
*
23618958 AAAATTAAAAAAATG
1 AAAATGAAAAAAATG
23618973 AAAATGAAATAAAATG
1 AAAATGAAA-AAAATG
23618989 AAAA
1 AAAA
23618993 AAAGAGCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (15 bp):
AAAATGAAAAAAATG
Found at i:23619457 original size:30 final size:30
Alignment explanation
Indices: 23619419--23619626 Score: 265
Period size: 30 Copynumber: 7.0 Consensus size: 30
23619409 CTCTGTAGGT
* * *
23619419 CCCT-AAACTATTCAAAAATTATATTTTAA
1 CCCTAAAACTTTTCTAAAATTACATTTTAA
*
23619448 CCTTAAAACTTTTCTAAAATTACATTTTAA
1 CCCTAAAACTTTTCTAAAATTACATTTTAA
* * *
23619478 CCCCAAAACTTTTCCAAAATTACATTTTGA
1 CCCTAAAACTTTTCTAAAATTACATTTTAA
*
23619508 CCCTAAAACTTTTCCAAAATTACATTTTAA
1 CCCTAAAACTTTTCTAAAATTACATTTTAA
*
23619538 CCCTAAAACTTTTCTAATATTACATTTTAA
1 CCCTAAAACTTTTCTAAAATTACATTTTAA
* * *
23619568 CCTTAAAACTTTTCTAATATTACATTTTGA
1 CCCTAAAACTTTTCTAAAATTACATTTTAA
* * * *
23619598 CCCCAAAACATTTCCAAATTTACATTTTA
1 CCCTAAAACTTTTCTAAAATTACATTTTA
23619627 CCCCCCAAAC
Statistics
Matches: 157, Mismatches: 21, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
29 3 0.02
30 154 0.98
ACGTcount: A:0.38, C:0.21, G:0.01, T:0.39
Consensus pattern (30 bp):
CCCTAAAACTTTTCTAAAATTACATTTTAA
Found at i:23619576 original size:90 final size:90
Alignment explanation
Indices: 23619419--23619626 Score: 301
Period size: 90 Copynumber: 2.3 Consensus size: 90
23619409 CTCTGTAGGT
* * * *
23619419 CCCT-AAACTATTCAAAAATTATATTTTAACCTTAAAACTTTTCTAAAATTACATTTTAACCCCA
1 CCCTAAAACTTTTCCAAAATTACATTTTAACCCTAAAACTTTTCTAAAATTACATTTTAACCCCA
23619483 AAACTTTTCCAAAATTACATTTTGA
66 AAACTTTTCCAAAATTACATTTTGA
* **
23619508 CCCTAAAACTTTTCCAAAATTACATTTTAACCCTAAAACTTTTCTAATATTACATTTTAACCTTA
1 CCCTAAAACTTTTCCAAAATTACATTTTAACCCTAAAACTTTTCTAAAATTACATTTTAACCCCA
* *
23619573 AAACTTTTCTAATATTACATTTTGA
66 AAACTTTTCCAAAATTACATTTTGA
* * *
23619598 CCCCAAAACATTTCCAAATTTACATTTTA
1 CCCTAAAACTTTTCCAAAATTACATTTTA
23619627 CCCCCCAAAC
Statistics
Matches: 106, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
89 4 0.04
90 102 0.96
ACGTcount: A:0.38, C:0.21, G:0.01, T:0.39
Consensus pattern (90 bp):
CCCTAAAACTTTTCCAAAATTACATTTTAACCCTAAAACTTTTCTAAAATTACATTTTAACCCCA
AAACTTTTCCAAAATTACATTTTGA
Found at i:23619654 original size:29 final size:30
Alignment explanation
Indices: 23619452--23619647 Score: 141
Period size: 30 Copynumber: 6.6 Consensus size: 30
23619442 TTTTAACCTT
* * * *
23619452 AAAACTTTTCTAAAATTACATTTTAACCCC
1 AAAACATTTCCAAAGTTACATTTTACCCCC
* * *
23619482 AAAACTTTTCCAAAATTACATTTTGA-CCCT
1 AAAACATTTCCAAAGTTACATTTT-ACCCCC
* * * *
23619512 AAAACTTTTCCAAAATTACATTTTAACCCT
1 AAAACATTTCCAAAGTTACATTTTACCCCC
* * * **
23619542 AAAACTTTTCTAATA-TTACATTTTAACCTT
1 AAAACATTTCCAA-AGTTACATTTTACCCCC
* *
23619572 AAAACTTTTCTAATA-TTACATTTTGA-CCCC
1 AAAACATTTCCAA-AGTTACATTTT-ACCCCC
*
23619602 AAAACATTTCCAAATTTACATTTTACCCCC
1 AAAACATTTCCAAAGTTACATTTTACCCCC
*
23619632 CAAAC-TTTCCAAAGTT
1 AAAACATTTCCAAAGTT
23619648 CTATTTTTAT
Statistics
Matches: 150, Mismatches: 10, Indels: 13
0.87 0.06 0.08
Matches are distributed among these distances:
29 13 0.09
30 134 0.89
31 3 0.02
ACGTcount: A:0.37, C:0.23, G:0.02, T:0.38
Consensus pattern (30 bp):
AAAACATTTCCAAAGTTACATTTTACCCCC
Found at i:23623008 original size:60 final size:60
Alignment explanation
Indices: 23622947--23623246 Score: 264
Period size: 60 Copynumber: 5.0 Consensus size: 60
23622937 CGGAGGATTT
* * ** * *
23622947 AGGGTTAAAATGTGATTTTGGGAAAGTTCGAGGGACCAAAATATGATTTTTGAAAAGTTT-
1 AGGGTTAAAATGTAATTTTGGAAAAGTTTAAGGG-TCAAAATATAATTTTTGAAAAGTTTG
* * * * * * * *
23623007 AGGGATCAAAATGCAATTTTGGACAAGTTTGAGAGTCAAAATGTAATTATGGAAAAGTTTG
1 AGGG-TTAAAATGTAATTTTGGAAAAGTTTAAGGGTCAAAATATAATTTTTGAAAAGTTTG
* * ** * * **
23623068 AGGGTCAAAATATAATTTTCAAAAAATTTAAGGGTTAAAATGCAA-TTTTGAAAAAGTTTGG
1 AGGGTTAAAATGTAATTTTGGAAAAGTTTAAGGGTCAAAATATAATTTTTG-AAAAGTTT-G
* * * * *
23623129 GGGGTTAAAATGTAATTTTGGAAAAATTTAAGGGTTAAAATGTAATTTGTGAAAAGTTTG
1 AGGGTTAAAATGTAATTTTGGAAAAGTTTAAGGGTCAAAATATAATTTTTGAAAAGTTTG
* * *
23623189 GGGGTTAAAATGTGATTTTTGAAAAGTTT-AGGGATCAAAATATAATTTTTGAAAAGTT
1 AGGGTTAAAATGTAATTTTGGAAAAGTTTAAGGG-TCAAAATATAATTTTTGAAAAGTT
23623247 CGGAGGTCCT
Statistics
Matches: 197, Mismatches: 37, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
59 7 0.04
60 111 0.56
61 75 0.38
62 4 0.02
ACGTcount: A:0.39, C:0.04, G:0.23, T:0.34
Consensus pattern (60 bp):
AGGGTTAAAATGTAATTTTGGAAAAGTTTAAGGGTCAAAATATAATTTTTGAAAAGTTTG
Found at i:23623017 original size:30 final size:29
Alignment explanation
Indices: 23622944--23623246 Score: 221
Period size: 30 Copynumber: 10.1 Consensus size: 29
23622934 TTTCGGAGGA
* * * *
23622944 TTTAGGGTTAAAATGTGATTTTGGGAAAG
1 TTTAGGGTCAAAATGTAATTTTTGAAAAG
* * * *
23622973 TTCGAGGGACCAAAATATGATTTTTGAAAAG
1 TT-TAGGG-TCAAAATGTAATTTTTGAAAAG
* * *
23623004 TTTAGGGATCAAAATGCAATTTTGGACAAG
1 TTTAGGG-TCAAAATGTAATTTTTGAAAAG
* * *
23623034 TTTGAGAGTCAAAATGTAATTATGGAAAAG
1 TTT-AGGGTCAAAATGTAATTTTTGAAAAG
* ** *
23623064 TTTGAGGGTCAAAATATAATTTTCAAAAAA
1 TTT-AGGGTCAAAATGTAATTTTTGAAAAG
* *
23623094 TTTAAGGGTTAAAATGCAA-TTTTGAAAAAG
1 TTT-AGGGTCAAAATGTAATTTTTG-AAAAG
* * * *
23623124 TTTGGGGGGTTAAAATGTAATTTTGGAAAAA
1 TTT--AGGGTCAAAATGTAATTTTTGAAAAG
* *
23623155 TTTAAGGGTTAAAATGTAATTTGTGAAAAG
1 TTT-AGGGTCAAAATGTAATTTTTGAAAAG
* * *
23623185 TTTGGGGGTTAAAATGTGATTTTTGAAAAG
1 TTT-AGGGTCAAAATGTAATTTTTGAAAAG
*
23623215 TTTAGGGATCAAAATATAATTTTTGAAAAG
1 TTTAGGG-TCAAAATGTAATTTTTGAAAAG
23623245 TT
1 TT
23623247 CGGAGGTCCT
Statistics
Matches: 219, Mismatches: 48, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
29 8 0.04
30 165 0.75
31 42 0.19
32 4 0.02
ACGTcount: A:0.39, C:0.04, G:0.23, T:0.35
Consensus pattern (29 bp):
TTTAGGGTCAAAATGTAATTTTTGAAAAG
Found at i:23623194 original size:91 final size:88
Alignment explanation
Indices: 23622983--23623243 Score: 261
Period size: 91 Copynumber: 2.9 Consensus size: 88
23622973 TTCGAGGGAC
* * * * * *
23622983 CAAAATATGATTTTTGAAAAGTTTAGGGATCAAAATGCAATTTTGGACAAGTTTGAGAGTCAAAA
1 CAAAATAT-AATTTTGAAAAGTTTAGGGGTTAAAATGCAATTTT-GAAAAGTTTGGGGGTCAAAA
* * *
23623048 TGTAATTATGGAAAAGTTTGAGGGT
64 TGTAATTTTGGAAAAATTTAAGGGT
* * * *
23623073 CAAAATATAATTTTCAAAAAATTTAAGGGTTAAAATGCAATTTTGAAAAAGTTTGGGGGGTTAAA
1 CAAAATATAATTTT-GAAAAGTTTAGGGGTTAAAATGCAATTTTG-AAAAGTTT-GGGGGTCAAA
23623138 ATGTAATTTTGGAAAAATTTAAGGGT
63 ATGTAATTTTGGAAAAATTTAAGGGT
* * * * * * *
23623164 TAAAATGTAATTTGTGAAAAGTTTGGGGGTTAAAATGTGATTTTTGAAAAGTTTAGGGATCAAAA
1 CAAAATATAATTT-TGAAAAGTTTAGGGGTTAAAATG-CAATTTTGAAAAGTTTGGGGGTCAAAA
* *
23623229 TATAATTTTTGAAAA
64 TGTAATTTTGGAAAA
23623244 GTTCGGAGGT
Statistics
Matches: 140, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
89 6 0.04
90 60 0.43
91 67 0.48
92 7 0.05
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.34
Consensus pattern (88 bp):
CAAAATATAATTTTGAAAAGTTTAGGGGTTAAAATGCAATTTTGAAAAGTTTGGGGGTCAAAATG
TAATTTTGGAAAAATTTAAGGGT
Found at i:23627175 original size:31 final size:30
Alignment explanation
Indices: 23627135--23627204 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
23627125 ACAAATTTAA
* * *
23627135 AAAATAAAAAATTAAATAAATTTTTTTAT-
1 AAAATAAAAAATCAAATAAATTATTATATC
23627164 AAAATTAAAAAATCAAATAAATTATTATATC
1 AAAA-TAAAAAATCAAATAAATTATTATATC
23627195 AAAATAAAAA
1 AAAATAAAAA
23627205 GGACACAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 4 0.11
30 28 0.78
31 4 0.11
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (30 bp):
AAAATAAAAAATCAAATAAATTATTATATC
Found at i:23629683 original size:18 final size:18
Alignment explanation
Indices: 23629660--23629697 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
23629650 CACAATACAT
23629660 AGTTTGACAAATTAATAC
1 AGTTTGACAAATTAATAC
* *
23629678 AGTTTGCCATATTAATAC
1 AGTTTGACAAATTAATAC
23629696 AG
1 AG
23629698 ATCATCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (18 bp):
AGTTTGACAAATTAATAC
Found at i:23630065 original size:32 final size:30
Alignment explanation
Indices: 23630026--23630130 Score: 102
Period size: 32 Copynumber: 3.3 Consensus size: 30
23630016 TGCATATGTT
*
23630026 TTATATATAATCAAGACCCACACATGTATATA
1 TTATATATAATCAAAACCCACACA--TATATA
* * *
23630058 TTATATATAAAAACAAAATCCACGCATATATA
1 TTATATAT--AATCAAAACCCACACATATATA
*
23630090 TTATATATAATAAAAACCCACACACATATATA
1 TTATATATAATCAAAA-CC-CACACATATATA
*
23630122 TTGTATATA
1 TTATATATA
23630131 TACACATACC
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
30 6 0.10
31 1 0.02
32 41 0.68
34 12 0.20
ACGTcount: A:0.49, C:0.16, G:0.04, T:0.31
Consensus pattern (30 bp):
TTATATATAATCAAAACCCACACATATATA
Found at i:23630065 original size:34 final size:33
Alignment explanation
Indices: 23629987--23630132 Score: 106
Period size: 34 Copynumber: 4.5 Consensus size: 33
23629977 CCCATATACA
* * *
23629987 TATATATTATATA-A-AACAAGATCCATATATG
1 TATATATTATATATATAACAAGACCCACACATG
* * *
23630018 CATATGTTTTATATATAATCAAGACCCACACATG
1 TATATATTATATATATAA-CAAGACCCACACATG
* * * *
23630052 TATATATTATATATAAAAACAAAATCCACGCA--
1 TATATATTATATAT-ATAACAAGACCCACACATG
**
23630084 TATATATTATATATAATAA-AA-ACCCACACACA
1 TATATATTATATAT-ATAACAAGACCCACACATG
*
23630116 TATATATTGTATATATA
1 TATATATTATATATATA
23630133 CACATACCTT
Statistics
Matches: 92, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
30 7 0.08
31 15 0.16
32 32 0.35
33 2 0.02
34 33 0.36
35 3 0.03
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (33 bp):
TATATATTATATATATAACAAGACCCACACATG
Found at i:23631994 original size:26 final size:26
Alignment explanation
Indices: 23631965--23632054 Score: 144
Period size: 26 Copynumber: 3.5 Consensus size: 26
23631955 CATTAGCTGG
23631965 AGGCCTGCTATATATTCACCGGCTCA
1 AGGCCTGCTATATATTCACCGGCTCA
*
23631991 AGGCCTGCTATTTATTCACCGGCTCA
1 AGGCCTGCTATATATTCACCGGCTCA
* *
23632017 AGGCCTACTATATATTCATCGGCTCA
1 AGGCCTGCTATATATTCACCGGCTCA
*
23632043 AAGCCTGCTATA
1 AGGCCTGCTATA
23632055 CGATTGTTTA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 58 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (26 bp):
AGGCCTGCTATATATTCACCGGCTCA
Found at i:23631998 original size:52 final size:52
Alignment explanation
Indices: 23631939--23632053 Score: 149
Period size: 52 Copynumber: 2.2 Consensus size: 52
23631929 CACCGACATG
** ** *
23631939 AAGCCTGCTATTTAATCATTAGCTGGAGGCCTGCTATATATTCACCGGCTCA
1 AAGCCTGCTATTTAATCACCAGCTCAAGGCCTACTATATATTCACCGGCTCA
* * * *
23631991 AGGCCTGCTATTTATTCACCGGCTCAAGGCCTACTATATATTCATCGGCTCA
1 AAGCCTGCTATTTAATCACCAGCTCAAGGCCTACTATATATTCACCGGCTCA
23632043 AAGCCTGCTAT
1 AAGCCTGCTAT
23632054 ACGATTGTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (52 bp):
AAGCCTGCTATTTAATCACCAGCTCAAGGCCTACTATATATTCACCGGCTCA
Found at i:23632897 original size:16 final size:16
Alignment explanation
Indices: 23632878--23632916 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
23632868 CTCCTTTTTC
23632878 TTTTATTCATCTTAAT
1 TTTTATTCATCTTAAT
* *
23632894 TTTTAATCATTTTAAT
1 TTTTATTCATCTTAAT
*
23632910 ATTTATT
1 TTTTATT
23632917 TTAAGTCTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTATTCATCTTAAT
Found at i:23635196 original size:19 final size:19
Alignment explanation
Indices: 23635160--23635197 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
23635150 TTTAATTAAT
*
23635160 TTTTTAAAATTTAAAAATA
1 TTTTTAAAATTAAAAAATA
23635179 TTTTTAAAA-TAAATAAATA
1 TTTTTAAAATTAAA-AAATA
23635198 ATGTTAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTTTAAAATTAAAAAATA
Found at i:23638969 original size:19 final size:19
Alignment explanation
Indices: 23638945--23638981 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
23638935 TAGCTCAACG
23638945 TTGTTTAT-AATAATTTTAT
1 TTGTTTATCAA-AATTTTAT
23638964 TTGTTTATCAAAATTTTA
1 TTGTTTATCAAAATTTTA
23638982 AATGTCATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (19 bp):
TTGTTTATCAAAATTTTAT
Found at i:23644913 original size:25 final size:23
Alignment explanation
Indices: 23644885--23644930 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
23644875 GCTGGATCCA
23644885 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
23644910 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
23644931 CCCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:23646232 original size:22 final size:22
Alignment explanation
Indices: 23646204--23646251 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
23646194 TACCGACTGG
*
23646204 CGCGTGGGTGTGGAAGAAGCGA
1 CGCGTGGGCGTGGAAGAAGCGA
23646226 CGCGTGGGCGTGGAAGAAGCGA
1 CGCGTGGGCGTGGAAGAAGCGA
23646248 CGCG
1 CGCG
23646252 GGAACCGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.21, C:0.19, G:0.50, T:0.10
Consensus pattern (22 bp):
CGCGTGGGCGTGGAAGAAGCGA
Found at i:23647032 original size:30 final size:29
Alignment explanation
Indices: 23646980--23647073 Score: 89
Period size: 30 Copynumber: 3.1 Consensus size: 29
23646970 TAAACTTTCC
23646980 AAAATTCCATTTTTTAACCCCGATTTCTCCA
1 AAAATTCCA-TTTTTAA-CCCGATTTCTCCA
* **
23647011 AAAATTACCATTTTTATCCCGAGATCTCCA
1 AAAATT-CCATTTTTAACCCGATTTCTCCA
* * * *
23647041 AAAACTCAATTTTTGACCTCGATTTTTCCA
1 AAAATTCCATTTTTAACC-CGATTTCTCCA
23647071 AAA
1 AAA
23647074 TTATCATTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 9 0.18
30 27 0.53
31 12 0.24
32 3 0.06
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (29 bp):
AAAATTCCATTTTTAACCCGATTTCTCCA
Found at i:23652726 original size:20 final size:20
Alignment explanation
Indices: 23652698--23652741 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
23652688 ACTCAGATCC
* **
23652698 AAAAAAAAAGAAGGAAAAAG
1 AAAAAAAAAAAACAAAAAAG
*
23652718 AAAATAAAAAAACAAAAAAG
1 AAAAAAAAAAAACAAAAAAG
23652738 AAAA
1 AAAA
23652742 GGAGAGGTCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.84, C:0.02, G:0.11, T:0.02
Consensus pattern (20 bp):
AAAAAAAAAAAACAAAAAAG
Found at i:23653749 original size:49 final size:50
Alignment explanation
Indices: 23653675--23653800 Score: 139
Period size: 49 Copynumber: 2.5 Consensus size: 50
23653665 ATGGATTCAG
* * * * *
23653675 TACCACAAA-AACACGACGAGAAAGATCTAAGACTGCAATGGCGGATCCAA
1 TACCACAAAGAACAC-AAGGGAAAGATCTAAGACCGCAACGGCAGATCCAA
* * *
23653725 TACTACGAAG-ACACAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAG
1 TACCACAAAGAACACAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAA
*
23653774 TACCACAAAGATACAGAAGGGAAAGAT
1 TACCACAAAGA-ACACAAGGGAAAGAT
23653801 ATCCAGTACC
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
49 37 0.60
50 11 0.18
51 14 0.23
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.11
Consensus pattern (50 bp):
TACCACAAAGAACACAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAA
Found at i:23653806 original size:33 final size:33
Alignment explanation
Indices: 23653768--23653833 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
23653758 GCAACGGCAG
23653768 ATCCAGTACCACAAAGATACAGAAGGGAAAGAT
1 ATCCAGTACCACAAAGATACAGAAGGGAAAGAT
*
23653801 ATCCAGTACCACAAAGATGCAGAAGGGAAAGAT
1 ATCCAGTACCACAAAGATACAGAAGGGAAAGAT
23653834 CTAAAACTGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.47, C:0.18, G:0.23, T:0.12
Consensus pattern (33 bp):
ATCCAGTACCACAAAGATACAGAAGGGAAAGAT
Found at i:23653864 original size:51 final size:51
Alignment explanation
Indices: 23653805--23653927 Score: 201
Period size: 51 Copynumber: 2.4 Consensus size: 51
23653795 AAAGATATCC
* *
23653805 AGTACCACAAAGATGCAGAAGGGAAAGATCTAAAACTGCAACGGCAAATCA
1 AGTACCACAAAGATACAGAAGGGAAAGATCTAAAACCGCAACGGCAAATCA
* * *
23653856 AGTACCACAAAGATACAGAAGGGAAAGATCTAAGACCGCAACGGCAGATCC
1 AGTACCACAAAGATACAGAAGGGAAAGATCTAAAACCGCAACGGCAAATCA
23653907 AGTACCACAAAGATACAGAAG
1 AGTACCACAAAGATACAGAAG
23653928 AAAGATATAG
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.46, C:0.21, G:0.22, T:0.11
Consensus pattern (51 bp):
AGTACCACAAAGATACAGAAGGGAAAGATCTAAAACCGCAACGGCAAATCA
Found at i:23653946 original size:64 final size:64
Alignment explanation
Indices: 23653864--23653991 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
23653854 CAAGTACCAC
23653864 AAAGATACAGAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACAAAGATACAGAAG
1 AAAGATACAGAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACAAAGATACAGAAG
* * * *
23653928 AAAGATATAGGAGGGAAAGATTTAAGACCGCAATGGCAGATCCAGTACCACAAAGATACAGAAG
1 AAAGATACAGAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACAAAGATACAGAAG
23653992 GGAAAGATCT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.46, C:0.18, G:0.24, T:0.12
Consensus pattern (64 bp):
AAAGATACAGAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCACAAAGATACAGAAG
Found at i:23654082 original size:48 final size:49
Alignment explanation
Indices: 23653939--23654082 Score: 148
Period size: 51 Copynumber: 2.9 Consensus size: 49
23653929 AAGATATAGG
* * * *
23653939 AGGGAAAGAT-TTAAGACCGCAATGGCAGATCCAGTACCACAAAGATACAGA
1 AGGGAAAGATCTAAAG-CCGCAACGGCAGATCCAGTACCACGAAG--ACACA
* **
23653990 AGGGAAAGATCTAAAGCCGCAACGGTAGATCCAGTACCGTGAAGACACA
1 AGGGAAAGATCTAAAGCCGCAACGGCAGATCCAGTACCACGAAGACACA
** * *
23654039 AGGGAAAGATCT-AAGTTGTAACGGCGGATCCAGTACCACGAAGA
1 AGGGAAAGATCTAAAGCCGCAACGGCAGATCCAGTACCACGAAGA
23654083 GTTGAAGGGA
Statistics
Matches: 78, Mismatches: 14, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
48 25 0.32
49 16 0.21
51 33 0.42
52 4 0.05
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.14
Consensus pattern (49 bp):
AGGGAAAGATCTAAAGCCGCAACGGCAGATCCAGTACCACGAAGACACA
Found at i:23655178 original size:6 final size:6
Alignment explanation
Indices: 23655160--23655197 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
23655150 AAACTTTTCT
*
23655160 TTTAAA GTTTAAA TTTAAA -TTAAG TTTAAA TTTAAA TT
1 TTTAAA -TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT
23655198 GAATTCAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
5 4 0.14
6 18 0.64
7 6 0.21
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:23655186 original size:17 final size:17
Alignment explanation
Indices: 23655164--23655197 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
23655154 TTTTCTTTTA
23655164 AAGTTTAAATTTAAATT
1 AAGTTTAAATTTAAATT
23655181 AAGTTTAAATTTAAATT
1 AAGTTTAAATTTAAATT
23655198 GAATTCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (17 bp):
AAGTTTAAATTTAAATT
Found at i:23655207 original size:17 final size:17
Alignment explanation
Indices: 23655164--23655207 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
23655154 TTTTCTTTTA
*
23655164 AAGTTTAAATTTAAATT
1 AAGTTCAAATTTAAATT
*
23655181 AAGTTTAAATTTAAATT
1 AAGTTCAAATTTAAATT
23655198 GAA-TTCAAAT
1 -AAGTTCAAAT
23655208 CAAACATGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 23 0.92
18 2 0.08
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (17 bp):
AAGTTCAAATTTAAATT
Found at i:23657013 original size:31 final size:30
Alignment explanation
Indices: 23656978--23657050 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
23656968 GGAGGTTCCT
23656978 AAACTATCCAAAAATTAC-ATTTTAACCCCCA
1 AAACT-TCCAAAAATTACTATTTT-ACCCCCA
* *
23657009 AAACTTCTAAAAATTACTATTTTACCCTC-
1 AAACTTCCAAAAATTACTATTTTACCCCCA
23657038 AAACTTCACAAAA
1 AAACTTC-CAAAA
23657051 TTTCATTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 7 0.19
30 20 0.54
31 10 0.27
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (30 bp):
AAACTTCCAAAAATTACTATTTTACCCCCA
Found at i:23657042 original size:29 final size:29
Alignment explanation
Indices: 23656986--23657059 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 29
23656976 CTAAACTATC
23656986 CAAAAATTACATTTTAACCCCCAAAACTT
1 CAAAAATTACATTTTAACCCCCAAAACTT
*
23657015 CTAAAAATTACTATTTT-ACCCTC-AAACTT
1 C-AAAAATTAC-ATTTTAACCCCCAAAACTT
*
23657044 CACAAAATTTCATTTT
1 CA-AAAATTACATTTT
23657060 TGACCTCGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
28 6 0.15
29 15 0.38
30 14 0.35
31 5 0.12
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (29 bp):
CAAAAATTACATTTTAACCCCCAAAACTT
Found at i:23657060 original size:29 final size:30
Alignment explanation
Indices: 23656978--23657060 Score: 82
Period size: 30 Copynumber: 2.8 Consensus size: 30
23656968 GGAGGTTCCT
* *
23656978 AAACTATCCAAAAATTACATTTTAACCCCCA
1 AAACT-TCTAAAAATTACATTTTTACCCCCA
*
23657009 AAACTTCTAAAAATTAC-TATTTTACCCTC-
1 AAACTTCTAAAAATTACAT-TTTTACCCCCA
*
23657038 AAACTTC-ACAAAATTTCATTTTT
1 AAACTTCTA-AAAATTACATTTTT
23657061 GACCTCGATT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
28 1 0.02
29 19 0.42
30 20 0.44
31 5 0.11
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (30 bp):
AAACTTCTAAAAATTACATTTTTACCCCCA
Found at i:23657837 original size:17 final size:18
Alignment explanation
Indices: 23657815--23657905 Score: 84
Period size: 17 Copynumber: 5.3 Consensus size: 18
23657805 GACATTTTAA
* *
23657815 TTAAATTT-ATAATAATT
1 TTAAATTTGAAAATAAAT
23657832 TTAAATTTGAAAATAAAT
1 TTAAATTTGAAAATAAAT
* * *
23657850 TTAAA-CTCAAATTAAAT
1 TTAAATTTGAAAATAAAT
*
23657867 TTAAATTT-AAAACAAAT
1 TTAAATTTGAAAATAAAT
23657884 TT-AATCTT-AAAATAAAT
1 TTAAAT-TTGAAAATAAAT
23657901 TTAAA
1 TTAAA
23657906 ATGGGTTTGG
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
16 3 0.05
17 43 0.70
18 15 0.25
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (18 bp):
TTAAATTTGAAAATAAAT
Found at i:23657900 original size:34 final size:35
Alignment explanation
Indices: 23657825--23657905 Score: 110
Period size: 34 Copynumber: 2.3 Consensus size: 35
23657815 TTAAATTTAT
* *
23657825 AATAATTTTAAATTTGAAAATAAATTTAAACTCAA
1 AATAAATTTAAATTTGAAAACAAATTTAAACTCAA
* * *
23657860 ATTAAATTTAAATTT-AAAACAAATTTAATCTTAA
1 AATAAATTTAAATTTGAAAACAAATTTAAACTCAA
23657894 AATAAATTTAAA
1 AATAAATTTAAA
23657906 ATGGGTTTGG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 27 0.68
35 13 0.32
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (35 bp):
AATAAATTTAAATTTGAAAACAAATTTAAACTCAA
Found at i:23658316 original size:92 final size:92
Alignment explanation
Indices: 23658155--23659406 Score: 1941
Period size: 92 Copynumber: 13.6 Consensus size: 92
23658145 CAGGCTTGGG
* * *
23658155 GTTTGAAACTTCATCTGGCTCTTACTATAACTTCAGAGACATAAAGGTTCGTTATCCAACTTTAC
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
*
23658220 TATAACTTCAAGAGGATAAGAATTGAG
66 TATAACTTCAAGAGGATAAGAATTGAC
* * *
23658247 GTTTGAAACTTCATCTTGCTCTTA-TAATAACTTCAGAGAGACAAAGGTTCATTATCCAACTTTA
1 GTTTGAAGCTTCATCTTGCTCTTACT-ATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23658311 TTATAACTTCAAGAGGATAACAATTGAC
65 CTATAACTTCAAGAGGATAAGAATTGAC
* * * * * *
23658339 ATTTGAAGCTTCTTCTTGCTCTTACTATAACTTCAAAGAGACAAAGGTTCGTCATCCAACATTAC
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
*
23658404 AATAACTTCAAGAGGATAAGAATTGAC
66 TATAACTTCAAGAGGATAAGAATTGAC
* *
23658431 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGAAAAAGGTTCGTTATCCAATTTTAC
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
23658496 TATAACTTCAAGAGGATAAGAATTGAC
66 TATAACTTCAAGAGGATAAGAATTGAC
* *
23658523 ATTTGAAGCTTCATCTAGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
* *
23658588 TAAAACTTCAAGAGGATAAGAATTGAG
66 TATAACTTCAAGAGGATAAGAATTGAC
* *
23658615 GTTTGAAGCTTCATCTAGCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTAC
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
* * * *
23658680 TATAACTCCAAAAGGATAACAATTGAG
66 TATAACTTCAAGAGGATAAGAATTGAC
* * * * *
23658707 GCTTGAAGCTTTATCTTGCTCTTACTATAACTTCAAAGAGATGAAGGTTCGTTATCCAACTTCAC
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
*
23658772 TATAACTTCAAGAGGATAAGAATTCAC
66 TATAACTTCAAGAGGATAAGAATTGAC
* * * *
23658799 GTTTGAAGCTTCATCTAGCTCTTACTATAACTTCAGAGATATGAAGGTTCGTTATCCAACTTTAG
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
23658864 TATAACTTCAAGAGGATAAGAATTGAC
66 TATAACTTCAAGAGGATAAGAATTGAC
* * * * *
23658891 GTTGGAAGCTTCATCTTGCACTTACTATAACTCCAGGGAGATAAAGGTTCGTTATCCAACATTAC
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
23658956 TATAACTTCAAGAGGATAAGAATTGAC
66 TATAACTTCAAGAGGATAAGAATTGAC
* * * *
23658983 ATTTGAAGCTTCAACTGGCTTTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
*
23659048 TATAACTTCAAGAGGATAAGAATTAAC
66 TATAACTTCAAGAGGATAAGAATTGAC
*
23659075 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCATAGAGATAAAGGTTCGTTATCCAACTTTAC
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
23659140 TATAACTTCAAGAGGATAAGAATTGAC
66 TATAACTTCAAGAGGATAAGAATTGAC
* * *
23659167 GTTTGAAGCTTCAT-TTGGCTCTTAGTATAACTTCAGAGAGATAAGGGTTCGTTATCCAAATTTA
1 GTTTGAAGCTTCATCTT-GCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23659231 CTATAACTTCAAGAGGGTAAGAATTGAT
65 CTATAACTTCAAGAGGATAAGAATTGAC
* * * *
23659259 GTTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGAGCGATAAAGGTTCATCATCCAACTTTAC
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
23659324 TATAACTTCAAGAGGATAAGAATTGAC
66 TATAACTTCAAGAGGATAAGAATTGAC
*
23659351 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTATC
1 GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATC
23659407 GTTGGAAGCT
Statistics
Matches: 1056, Mismatches: 100, Indels: 8
0.91 0.09 0.01
Matches are distributed among these distances:
91 3 0.00
92 1051 1.00
93 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (92 bp):
GTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTAC
TATAACTTCAAGAGGATAAGAATTGAC
Found at i:23659066 original size:40 final size:40
Alignment explanation
Indices: 23659003--23659158 Score: 129
Period size: 40 Copynumber: 3.6 Consensus size: 40
23658993 TCAACTGGCT
23659003 TTTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAAC
1 TTTACTATAACTTCAAGAG-GATAAAGGTTCGTTATCCAAC
* **
23659043 TTTACTATAACTTCAAGAGGAT-AAGAATTAACGTTTGAAGCTTCATCTTGC
1 TTTACTATAACTTCAAGAGGATAAAG-GTT--CG-TT--A---TC--C-AAC
23659094 TCTTACTATAACTTCATAGA-GATAAAGGTTCGTTATCCAAC
1 T-TTACTATAACTTCA-AGAGGATAAAGGTTCGTTATCCAAC
23659135 TTTACTATAACTTCAAGAGGATAA
1 TTTACTATAACTTCAAGAGGATAA
23659159 GAATTGACGT
Statistics
Matches: 93, Mismatches: 6, Indels: 34
0.70 0.05 0.26
Matches are distributed among these distances:
39 6 0.06
40 38 0.41
41 6 0.06
42 3 0.03
43 2 0.02
44 2 0.02
45 1 0.01
47 1 0.01
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
52 19 0.20
53 6 0.06
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (40 bp):
TTTACTATAACTTCAAGAGGATAAAGGTTCGTTATCCAAC
Found at i:23659441 original size:56 final size:56
Alignment explanation
Indices: 23659350--23659462 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
23659340 TAAGAATTGA
*
23659350 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
1 CGTTGGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
* *
23659406 CGTTGGAAGCTTCATCTTGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTAT
1 CGTTGGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
23659462 C
1 C
23659463 CAACATTACT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (56 bp):
CGTTGGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
Found at i:23659463 original size:240 final size:240
Alignment explanation
Indices: 23659166--23659646 Score: 786
Period size: 240 Copynumber: 2.0 Consensus size: 240
23659156 TAAGAATTGA
* * *
23659166 CGTTTGAAGCTTCATTTGGCTCTTAGTATAACTTCAGAGAGATAAGGGTTCGTTATCCAA-ATTT
1 CGTTGGAAGCTTCATTTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACA-TT
* **
23659230 ACTATAACTTCAAGAGGGTAAGAATTGATGTTTGAAGCTTCATCTGGCTCTTACTATAACTTCAG
65 ACTATAACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCATCTGGCTCTTACTATAACTTCAG
* * *
23659295 AGCGATAAAGGTTCATCATCCAACTTTACTATAACTTCAAGAGGATAAGAATTGACGTTTGAAGC
130 AGAGATAAAGGTTCATCATCCAACTTTACTATAACTTCAAGAGGATAAGAATTAACGTTTGAAGA
23659360 TTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
195 TTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
*
23659406 CGTTGGAAGCTTCATCTT-GCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCAACATT
1 CGTTGGAAGCTTCAT-TTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACATT
*
23659470 ACTATAACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCATCTGGCTCTTACTATAACTTCAT
65 ACTATAACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCATCTGGCTCTTACTATAACTTCAG
** *
23659535 AGAGATAAAGGTTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGAATTAACGTTTGAAGA
130 AGAGATAAAGGTTCATCATCCAACTTTACTATAACTTCAAGAGGATAAGAATTAACGTTTGAAGA
* *
23659600 TTCATCTTGCTCTTACTATATCTTCAGAGAGATAAAGGTTCGTTAT
195 TTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
23659646 C
1 C
23659647 CAACTTTACT
Statistics
Matches: 223, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
240 220 0.99
241 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (240 bp):
CGTTGGAAGCTTCATTTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACATTA
CTATAACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGA
GAGATAAAGGTTCATCATCCAACTTTACTATAACTTCAAGAGGATAAGAATTAACGTTTGAAGAT
TCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
Found at i:23659482 original size:516 final size:516
Alignment explanation
Indices: 23658890--23659922 Score: 1780
Period size: 516 Copynumber: 2.0 Consensus size: 516
23658880 TAAGAATTGA
23658890 CGTTGGAAGCTTCATCTTGCACTTACTATAACTCCAGGGAGATAAAGGTTCGTTATCCAACATTA
1 CGTTGGAAGCTTCATCTTGCACTTACTATAACTCCAGGGAGATAAAGGTTCGTTATCCAACATTA
*
23658955 CTATAACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCAACTGGCTTTTACTATAACTTCAGA
66 CTATAACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCAACTGGCTCTTACTATAACTTCAGA
*
23659020 GAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGAATTAACGTTTGAAGCT
131 GAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGAATTAACGTTTGAAGAT
*
23659085 TCATCTTGCTCTTACTATAACTTCATAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCA
196 TCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCA
* *
23659150 AGAGGATAAGAATTGACGTTTGAAGCTTCAT-TTGGCTCTTAGTATAACTTCAGAGAGATAAGGG
261 AGAGGATAAGAATTGACGTTTGAAGCTTCATCTT-GCTCTTACTATAACTTCAGAGAGATAAAGG
* * * *
23659214 TTCGTTATCCAAATTTACTATAACTTCAAGAGGGTAAGAATTGATGTTTGAAGCTTCATCTGGCT
325 TTCGTTATCCAAATTTACGATAACTTCAAGAGGATAAGAATTGACGTTTAAAGCTTCATCTGGCT
* * * *
23659279 CTTACTATAACTTCAGAGCGATAAAGGTTCATCATCCAACTTTACTATAACTTCAAGAGGATAAG
390 CCTACTATAACTTCAGAGAGATAAAGGTTCATCATCCAACTTTACAATAACTTCAAAAGGATAAG
**
23659344 AATTGACGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
455 AATTGACGTAGGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
* *
23659406 CGTTGGAAGCTTCATCTTGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCAACATTA
1 CGTTGGAAGCTTCATCTTGCACTTACTATAACTCCAGGGAGATAAAGGTTCGTTATCCAACATTA
* *
23659471 CTATAACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCATCTGGCTCTTACTATAACTTCATA
66 CTATAACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCAACTGGCTCTTACTATAACTTCAGA
*
23659536 GAGATAAAGGTTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGAATTAACGTTTGAAGAT
131 GAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGAATTAACGTTTGAAGAT
*
23659601 TCATCTTGCTCTTACTATATCTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCA
196 TCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCA
*
23659666 AGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCTCTTACTATAAGTTCAGAGAGATAAAGGT
261 AGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGT
* * *
23659731 TTGTTATCTAACTTTACGATAACTTCAAGAGGATAAGAATTGACGTTTAAAGCTTCATCTGGCTC
326 TCGTTATCCAAATTTACGATAACTTCAAGAGGATAAGAATTGACGTTTAAAGCTTCATCTGGCTC
* * *
23659796 CTACTATGACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACAATAACTTCAAAAGGATAAGA
391 CTACTATAACTTCAGAGAGATAAAGGTTCATCATCCAACTTTACAATAACTTCAAAAGGATAAGA
* *
23659861 ATTGACGTAGGAAGCTTCATCTTGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTAT
456 ATTGACGTAGGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
23659922 C
1 C
23659923 CGACATTACT
Statistics
Matches: 486, Mismatches: 30, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
516 484 1.00
517 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (516 bp):
CGTTGGAAGCTTCATCTTGCACTTACTATAACTCCAGGGAGATAAAGGTTCGTTATCCAACATTA
CTATAACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCAACTGGCTCTTACTATAACTTCAGA
GAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGAATTAACGTTTGAAGAT
TCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCA
AGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGT
TCGTTATCCAAATTTACGATAACTTCAAGAGGATAAGAATTGACGTTTAAAGCTTCATCTGGCTC
CTACTATAACTTCAGAGAGATAAAGGTTCATCATCCAACTTTACAATAACTTCAAAAGGATAAGA
ATTGACGTAGGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTAT
Found at i:23659554 original size:148 final size:148
Alignment explanation
Indices: 23659263--23659547 Score: 489
Period size: 148 Copynumber: 1.9 Consensus size: 148
23659253 ATTGATGTTT
* *
23659263 GAAGCTTCATCTGGCTCTTACTATAACTTCAGAGCGATAAAGGTTCATCATCCAACTTTACTATA
1 GAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATCATCCAACATTACTATA
* *
23659328 ACTTCAAGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGAT
66 ACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGAT
23659393 AAAGGTTCATTATCGTTG
131 AAAGGTTCATTATCGTTG
* * * *
23659411 GAAGCTTCATCTTGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCAACATTACTATA
1 GAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATCATCCAACATTACTATA
*
23659476 ACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCATCTGGCTCTTACTATAACTTCATAGAGAT
66 ACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGAT
23659541 AAAGGTT
131 AAAGGTT
23659548 TGTTATCCAA
Statistics
Matches: 128, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
148 128 1.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (148 bp):
GAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATCATCCAACATTACTATA
ACTTCAAGAGGATAAGAATTGACATTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGAT
AAAGGTTCATTATCGTTG
Found at i:23659582 original size:40 final size:40
Alignment explanation
Indices: 23659520--23659766 Score: 131
Period size: 40 Copynumber: 5.6 Consensus size: 40
23659510 CATCTGGCTC
*
23659520 TTACTATAACTTCATAGA-GATAAAGGTTTGTTATCCAACT
1 TTACTATAACTTCA-AGAGGATAAAGGTTTGTTATCTAACT
* **
23659560 TTACTATAACTTCAAGAGGATAAGAATTAACGTTTGAAGATTCATCTTGCT
1 TTACTATAACTTCAAGAGGAT----A--AAGGTTT---G-TT-ATCTAACT
* * *
23659611 CTTACTATATCTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAG-GATAAAGGTTTGTTATCTAACT
**
23659652 TTACTATAACTTCAAGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGGAT-A-AA--G--GTTT---G-TT-ATCTAACT
*
23659703 CTTACTATAAGTTC-AGAGAGATAAAGGTTTGTTATCTAACT
1 -TTACTATAACTTCAAGAG-GATAAAGGTTTGTTATCTAACT
*
23659744 TTACGATAACTTCAAGAGGATAA
1 TTACTATAACTTCAAGAGGATAA
23659767 GAATTGACGT
Statistics
Matches: 158, Mismatches: 20, Indels: 58
0.67 0.08 0.25
Matches are distributed among these distances:
39 3 0.02
40 48 0.30
41 20 0.13
42 6 0.04
43 2 0.01
44 2 0.01
46 18 0.11
48 2 0.01
49 2 0.01
50 6 0.04
51 19 0.12
52 30 0.19
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (40 bp):
TTACTATAACTTCAAGAGGATAAAGGTTTGTTATCTAACT
Found at i:23660227 original size:40 final size:40
Alignment explanation
Indices: 23660165--23660411 Score: 117
Period size: 40 Copynumber: 5.6 Consensus size: 40
23660155 CATCTAGGTC
23660165 TTACTATAACTTC-AGAGAGATAAAGGATCGTTATCCAACT
1 TTACTATAACTTCAAGAG-GATAAAGGATCGTTATCCAACT
* **
23660205 TTACTATAACTTCAAGAGGAT-AAGAATTGACGTTTGAAGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGGATAAAGGA-T--CG-TT--A---TC--C-AACT
* *
23660256 CTTACTATAACTGC-AGAGAGATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAG-GATAAAGGATCGTTATCCAACT
* **
23660297 TTACTATAACTTCAAGAGGAT-AAGAATTAACGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGGATAAAGGA-T--CG-TT--A---TC--C-AACT
*
23660348 CTTACTATAACTTCATAGA-GATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCA-AGAGGATAAAGGATCGTTATCCAACT
23660389 TTACTATAACTTCAAGAGGATAA
1 TTACTATAACTTCAAGAGGATAA
23660412 GAATTGACGT
Statistics
Matches: 157, Mismatches: 17, Indels: 66
0.65 0.07 0.28
Matches are distributed among these distances:
39 10 0.06
40 52 0.33
41 12 0.08
42 6 0.04
43 4 0.03
44 4 0.03
45 2 0.01
47 2 0.01
48 4 0.03
49 4 0.03
50 6 0.04
51 8 0.05
52 34 0.22
53 9 0.06
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (40 bp):
TTACTATAACTTCAAGAGGATAAAGGATCGTTATCCAACT
Found at i:23661500 original size:40 final size:40
Alignment explanation
Indices: 23661455--23661609 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
23661445 CATCTGGCTC
23661455 TTACTATAACTTC-AGAGCGATAAAGGTTCATCATCCAACT
1 TTACTATAACTTCAAGAG-GATAAAGGTTCATCATCCAACT
* ***
23661495 TTACTATAACTTCAAGAGGATAAGAATTGTTGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGGAT-A-AA--G--G-TT----CATCATCCAACT
*
23661546 CTTACTATAACTTC-AGAGAGATAAAGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAG-GATAAAGGTTCATCATCCAACT
23661587 TTACTATAACTTCAAGAGGATAA
1 TTACTATAACTTCAAGAGGATAA
23661610 GAATTGACGT
Statistics
Matches: 91, Mismatches: 9, Indels: 30
0.70 0.07 0.23
Matches are distributed among these distances:
40 34 0.37
41 16 0.18
42 2 0.02
44 1 0.01
45 2 0.02
46 2 0.02
47 2 0.02
48 1 0.01
50 2 0.02
51 13 0.14
52 16 0.18
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (40 bp):
TTACTATAACTTCAAGAGGATAAAGGTTCATCATCCAACT
Found at i:23663064 original size:40 final size:40
Alignment explanation
Indices: 23663019--23663173 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
23663009 CATCTGGCTC
23663019 TTACTATAACTTC-AGAGCGATAAAGGTTCATCATCCAACT
1 TTACTATAACTTCAAGAG-GATAAAGGTTCATCATCCAACT
* ***
23663059 TTACTATAACTTCAAGAGGATAAGAATTGTTGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGGAT-A-AA--G--G-TT----CATCATCCAACT
*
23663110 CTTACTATAACTTC-AGAGAGATAAAGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAG-GATAAAGGTTCATCATCCAACT
23663151 TTACTATAACTTCAAGAGGATAA
1 TTACTATAACTTCAAGAGGATAA
23663174 GAATTGACGT
Statistics
Matches: 91, Mismatches: 9, Indels: 30
0.70 0.07 0.23
Matches are distributed among these distances:
40 34 0.37
41 16 0.18
42 2 0.02
44 1 0.01
45 2 0.02
46 2 0.02
47 2 0.02
48 1 0.01
50 2 0.02
51 13 0.14
52 16 0.18
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (40 bp):
TTACTATAACTTCAAGAGGATAAAGGTTCATCATCCAACT
Found at i:23664905 original size:40 final size:40
Alignment explanation
Indices: 23664861--23665016 Score: 118
Period size: 40 Copynumber: 3.6 Consensus size: 40
23664851 CATCTTACTC
23664861 TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACT
1 TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACT
** **
23664901 TTACTATAACTTTCAGAG-GATAAGAATTAACGTTTGAAGCTTCCTTTGGCT
1 TTACTATAAC-TTCAGAGAGATAAGGGTT--CG-TT--A---TCC---AACT
* *
23664952 CTTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACT
1 -TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACT
23664993 TTACTATAACTTCA-AGAGGATAAG
1 TTACTATAACTTCAGAGA-GATAAG
23665017 AATTTGAGGT
Statistics
Matches: 90, Mismatches: 11, Indels: 30
0.69 0.08 0.23
Matches are distributed among these distances:
39 3 0.03
40 37 0.41
41 9 0.10
42 2 0.02
43 2 0.02
44 3 0.03
45 1 0.01
47 1 0.01
48 3 0.03
49 2 0.02
50 1 0.01
51 9 0.10
52 17 0.19
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (40 bp):
TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACT
Done.