Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 62 of 171
Found at i:23665938 original size:40 final size:41
Alignment explanation
Indices: 23665876--23666214 Score: 136
Period size: 40 Copynumber: 7.6 Consensus size: 41
23665866 CATCTGGCTC
*
23665876 TTACTATAACTT-TAGAGAGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAAGGTTCGTTATCCAACT
* * * ***
23665916 TTACTATAACTTCAAGAGGATAAGAATTAACGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGA-G---AG-A-TAAAGGTT--CG-TT-ATCCAACT
23665967 CTTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAAGGTTCGTTATCCAACT
* *
23666008 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTAAAGCTTCATCTC-GCT
1 TTACTATAACTTCAAGAGAGAT-A-AA--G--G-TT--CG-TT-ATC-CAACT
* * *
23666059 CTTACAATAACTTC-AGAGATATAAAGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAAGGTTCGTTATCCAACT
* * *
23666100 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTGGAAGCTTCATCTAGCT
1 TTACTATAACTTCAAGAGAGAT-A-AA--G--GTT---CG-TT-ATCCAACT
* * *
23666151 CTTACTATAACTTC-AGGGAGATAAAGGTTCGTTATCCGACA
1 -TTACTATAACTTCAAGAGAGATAAAGGTTCGTTATCCAACT
23666192 TTACTATAACTTCAAGAG-GATAA
1 TTACTATAACTTCAAGAGAGATAA
23666215 CAATTGAGGT
Statistics
Matches: 223, Mismatches: 33, Indels: 86
0.65 0.10 0.25
Matches are distributed among these distances:
40 61 0.27
41 30 0.13
42 11 0.05
43 2 0.01
44 2 0.01
45 10 0.04
46 10 0.04
47 10 0.04
48 2 0.01
49 2 0.01
50 11 0.05
51 28 0.13
52 44 0.20
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (41 bp):
TTACTATAACTTCAAGAGAGATAAAGGTTCGTTATCCAACT
Found at i:23667136 original size:92 final size:92
Alignment explanation
Indices: 23659406--23667127 Score: 11586
Period size: 92 Copynumber: 83.8 Consensus size: 92
23659396 GGTTCATTAT
* * *
23659406 CGTTGGAAGCTTCATCTTGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCAACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23659471 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * *
23659498 CATTTGAAGCTTCATCTGGCTCTTACTATAACTTCATAGAGATAAAGGTTTGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23659563 CTATAACTTCAAGAGGATAAGAATTAA
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23659590 CGTTTGAAGATTCATCTTGCTCTTACTATATCTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23659655 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23659682 CGTTTGAAGCTTCATCTTGCTCTTACTATAAGTTCAGAGAGATAAAGGTTTGTTATCTAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23659747 CGATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * *
23659774 CGTTTAAAGCTTCATCTGGCTCCTACTATGACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23659839 CAATAACTTCAAAAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
** * * *
23659866 CGTAGGAAGCTTCATCTTGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23659931 CTATAACTTCAAGAGGATAACAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23659958 GGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23660023 CTATAACTTTC-AGAGGATAAGAATTAA
66 CTATAAC-TTCAAGAGGATAAGAATTGA
* *
23660050 CGTTTGAAGCTTCCT-TTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTT
1 CGTTTGAAGCTTCATCTT-GCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTT
*
23660114 ACTATAACTTTAAGAGGATAAGAATTTGA
65 ACTATAACTTCAAGAGGATAAGAA-TTGA
* * * * *
23660143 GGTTTGAAGTTTCATCTAGGTCTTACTATAACTTCAGAGAGATAAAGGATCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23660208 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23660235 CGTTTGAAGCTTCATCTGGCTCTTACTATAACTGCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23660300 CTATAACTTCAAGAGGATAAGAATTAA
66 CTATAACTTCAAGAGGATAAGAATTGA
*
23660327 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCATAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23660392 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23660419 CGTTTGAAGCTTCAT-TTGGCTCTTAGTATAACTTCAGAGAGATAAGGGTTCGTTATCCAAATTT
1 CGTTTGAAGCTTCATCTT-GCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTT
*
23660483 ACTATAACTTCAAGAGGGTAAGAATTGA
65 ACTATAACTTCAAGAGGATAAGAATTGA
* * * *
23660511 TGTTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGAGCGATAAAGGTTCGTTATCGAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23660576 CTATAACTTCAACAGGATAAGAATTTTA
66 CTATAACTTCAAGAGGATAAGAA-TTGA
* * * *
23660604 GGTCTGAAGCTTCATCTGGCTCTTACTATAACTTTAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23660669 CTATAACTTCAAGAGGATAAGAATTTGA
66 CTATAACTTCAAGAGGATAAGAA-TTGA
* ** * *
23660697 GGTTTGAAGCTTTGTCTGGCTCTTACCATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23660762 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * *
23660789 GGTTTCAAACTTCATCTTGCTCTTA-TAATAACTTTC-GAGAGATAAAGGTTCATTATCCAACTT
1 CGTTTGAAGCTTCATCTTGCTCTTACT-ATAAC-TTCAGAGAGATAAAGGTTCGTTATCCAACTT
* * *
23660852 TATTATAACTTTAAGAGGATAACAATTGA
64 TACTATAACTTCAAGAGGATAAGAATTGA
* * *
23660881 CATTTGAAGCTTCATCTTGCTCTTACTATAACTTTAGAGAGATAAAGGTTCGTTATCCAATTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* * *
23660946 TTATAACTTCAAGAGCATAAGAATTGT
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23660973 CGTTTGAAGCTTCATCTTGATCTTACTATAACTTCAGAGCGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23661038 CTATAACATTC-AGAGGATAAGAATTGA
66 CTATAAC-TTCAAGAGGATAAGAATTGA
* * *
23661065 CGTTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCAAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23661130 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * *
23661157 CGTTGGAAGCTTCATCTTGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23661222 CTATAACTTCAAGAGGATAATAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23661249 GGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCATCTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23661314 CTATAACTTTC-AGAGGATAAGAATTGA
66 CTATAAC-TTCAAGAGGATAAGAATTGA
* * * *
23661341 CGTTTGAAGCTTCAT-TTGGCTCTTGGC-ATAACTTAAGAGAGATAAGGGTTCGTTATCCAAATT
1 CGTTTGAAGCTTCATCTT-GCTCTT-ACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTT
*
23661404 TACTATAACTTCAAGAGGGTAAGAATTGA
64 TACTATAACTTCAAGAGGATAAGAATTGA
* * * * *
23661433 TGTTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGAGCGATAAAGGTTCATCATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23661498 CTATAACTTCAAGAGGATAAGAATTGT
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23661525 TGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23661590 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23661617 CGTTGGAAGCTTCATCTTGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCAACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23661682 CTATAACTTCAAGACGATAAGAATTTA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23661709 CATTTGAAGCTTCAT-TTGGCTCTTACTATAACTTTATAGAGATAAAGGTTCGTTATCCAACTTT
1 CGTTTGAAGCTTCATCTT-GCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTT
*
23661773 ACTATAACTTCAAGAGGATAAGAATTAA
65 ACTATAACTTCAAGAGGATAAGAATTGA
* * *
23661801 CGTTTGAAGATTCATCTTGCTCTTACTATATCTTCAGAGAGATAAAGGTCCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23661866 CTATAACTTCAAGAGGATAAGAATTAA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23661893 CGTTTGAAGCTTCATCTTGCTCTTACTATAAGTTCAGAGAGATAAAGGTTTGTTATCTAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23661958 CGATAACTTCAAGAGGATAAGAATTAA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23661985 CGTTTAAAGCTTTATCTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* * *
23662050 CAATAACTTCAAAAGGATGAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
** * * *
23662077 CGTAGGAAGCTTCATCTTGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23662142 CTATAACTTCAAGAGGATAACAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23662169 GGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23662234 CTATAACTTTC-AGAGGATAAGAATTAA
66 CTATAAC-TTCAAGAGGATAAGAATTGA
* * *
23662261 CGTTTGAAGCTTCCT-TTGGCTCTTACTATAACTTAAGAGAGATAAAGGTTCATTATCCAACTTT
1 CGTTTGAAGCTTCATCTT-GCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTT
23662325 ACTATAACTTC-A-AGGATAAGAATTTGA
65 ACTATAACTTCAAGAGGATAAGAA-TTGA
* * * * **
23662352 GGTTTGAAGCTTCATCTAGCTCTTACTATAACTTCAAAGACATAAAGGACCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23662417 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23662444 CGTTTGAAGCTTCATCTGGCACTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCGAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23662509 CTATAACTTCAACAGGATAAGAATTTTA
66 CTATAACTTCAAGAGGATAAGAA-TTGA
* * *
23662537 GGTTTGAAGCTTCATCTGGCTCTTACTATAACTTTAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23662602 CTATAACATTC-AGAGGATAAGAATTGA
66 CTATAAC-TTCAAGAGGATAAGAATTGA
* * *
23662629 CGTTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCAAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23662694 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * *
23662721 CGTTGGAAGCTTCATCTTGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23662786 CTATAACTTCAAGAGGATAATAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23662813 GGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCATCTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23662878 CTATAACTTTC-AGAGGATAAGAATTGA
66 CTATAAC-TTCAAGAGGATAAGAATTGA
** * *
23662905 CGTTTGAAGCTTCAT-TTGGCTCTTGGTATAACTTCAGAGAGATAAGGGTTCGTTATCCAAATTT
1 CGTTTGAAGCTTCATCTT-GCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTT
*
23662969 ACTATAACTTCAAGAGGGTAAGAATTGA
65 ACTATAACTTCAAGAGGATAAGAATTGA
* * * * *
23662997 TGTTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGAGCGATAAAGGTTCATCATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23663062 CTATAACTTCAAGAGGATAAGAATTGT
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23663089 TGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23663154 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * *
23663181 CGTTGGAAGCTTCATCTTGCTCTTACTATAACTTTAGGGAGATAAAGGTTCGTTATCCAACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23663246 CTATAACTTCAAGACGATAAGAATTTA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23663273 CATTTGAAGCTTCAT-TTGGCTCTTACTATAACTTTATAGAGATAAAGGTTCGTTATCCAACTTT
1 CGTTTGAAGCTTCATCTT-GCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTT
*
23663337 ACTATAACTTCAAGAGGATAAGAATTAA
65 ACTATAACTTCAAGAGGATAAGAATTGA
* * *
23663365 CGTTTGAAGATTCATCTTGCTCTTACTATATCTTCAGAGAGATAAAGGTCCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23663430 CTATAACTTTAAGAGGATAAGAATTAA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23663457 CGTTTGAAGCTTCATCTTGCTCTTACTATAAGTTCAGAGAGATAAAGGTTTGTTATCTAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23663522 CGATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * * *
23663549 CGTTTAAAGCTTTATCTGGCTCTTTCTATAACTTTAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23663614 CAATAACTTCAAAAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
** * * * *
23663641 CGTAGGAAGCTTCATCTTGCTCTTACTATAACTTTAGGGAGATAAAGGTTCGTTATCCGACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23663706 CTATAACTTCAAGAGGATAACAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23663733 GGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23663798 CTATAACTTTC-AGAGGATAAGAATTAA
66 CTATAAC-TTCAAGAGGATAAGAATTGA
* * *
23663825 CGTTTGAAGCTTCCT-TTGGCTCTTACTATAACTTAAGAGAGATAAAGGTTCATTATCCAACTTT
1 CGTTTGAAGCTTCATCTT-GCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTT
23663889 ACTATAACTTCAAGAGGATAAGAATTTGA
65 ACTATAACTTCAAGAGGATAAGAA-TTGA
* * * *
23663918 GGTTTGAAGTTTCATCTAGCTCTTACTATAACTTCAGAGAGATAAAGGATCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23663983 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23664010 CGTTTGAAGCTTCATCTGGCTCTTACTATAACTGCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* * *
23664075 TTATAACTTCAA-CGGATAAGAATTTTA
66 CTATAACTTCAAGAGGATAAGAA-TTGA
* * *
23664102 GGTTTGAAGCTTCATCTGGGTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23664167 TTATAACTTCAAGAGGATAAGAATTTGA
66 CTATAACTTCAAGAGGATAAGAA-TTGA
* ** * *
23664195 GGTTTGAAGCTTTGTCTGGCTCTTACCATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23664260 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * * *
23664287 GGTTTCAAACTTCATCTTGCTCTTA-TAATAACTTCCGAGAGATAAAGGTTCATTATCCAACTTT
1 CGTTTGAAGCTTCATCTTGCTCTTACT-ATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTT
* * *
23664351 ATTATAACTTTAAGAGGATAACAATTGA
65 ACTATAACTTCAAGAGGATAAGAATTGA
* * *
23664379 CATTTGAAGCTTCATCTTGCTCTTACTATAACTTTAGAGAGATAAAGGTTCGTTATCCAATTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* * * *
23664444 TTATAATTTCAAGAGCATAAGAATTAA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23664471 CGTTTGACGATTCATCTTGCTCTTACTATATCTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23664536 CTATAACTTCAAGAGGATAGGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23664563 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTTGTTATCTAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23664628 CGATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23664655 CGTTTAAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23664720 CAATAACTTCAAAAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
** * * * *
23664747 CGTAGGAAGCTTCATCTTGCTCTTACTATAACTTTAGGGAGATAAAGGTTCGTTATCCGACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23664812 CTATAACTTCAAGAGGATAACAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23664839 GGTTTGAAGCTTCATCTTACTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23664904 CTATAACTTTC-AGAGGATAAGAATTAA
66 CTATAAC-TTCAAGAGGATAAGAATTGA
* *
23664931 CGTTTGAAGCTTCCT-TTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTT
1 CGTTTGAAGCTTCATCTT-GCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTT
23664995 ACTATAACTTCAAGAGGATAAGAATTTGA
65 ACTATAACTTCAAGAGGATAAGAA-TTGA
* * * *
23665024 GGTTTGAAGTTTCATCTAGCTCTTACTATAACTTCAGAGAGATAAAGGATCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23665089 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
*
23665116 CGTTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23665181 TTATAACTTCAACG-GGATAAGAATTTTA
66 CTATAACTTCAA-GAGGATAAGAA-TTGA
* * *
23665209 GGTTTGAAGCTTCATCTGGGTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* * *
23665274 TTATAACTTCAAAAGGATAAAAATTTGA
66 CTATAACTTCAAGAGGATAAGAA-TTGA
* ** * *
23665302 GGTTTGAAGCTTTGTCTGGCTCTTACCATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23665367 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * *
23665394 GGTTTCAAACTTCATCTTGCTCTTA-TAATAACTTCCA-AGAGATAAAGGTTCATTATCCAACTT
1 CGTTTGAAGCTTCATCTTGCTCTTACT-ATAACTT-CAGAGAGATAAAGGTTCGTTATCCAACTT
* *
23665457 TATTATAACTTTAAGAGGAT-AGCAATTGA
64 TACTATAACTTCAAGAGGATAAG-AATTGA
* *
23665486 CATTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAATTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* * *
23665551 TTATAACTTCAAGAGCATAAGAATTGT
66 CTATAACTTCAAGAGGATAAGAATTGA
*
23665578 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGCGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23665643 CTACAACTTTC-AGAGGATAAGAATTGA
66 CTATAAC-TTCAAGAGGATAAGAATTGA
* * *
23665670 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTACAGGGAGATAAAGGTTCATTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23665735 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * * *
23665762 TGTTGGAAGCTTCATCTTGCTCTTATTATAACTTCAGGGAGATAAAGGTTCGTTATCCAACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23665827 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23665854 CATTTGAAGCTTCATCTGGCTCTTACTATAACTTTAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23665919 CTATAACTTCAAGAGGATAAGAATTAA
66 CTATAACTTCAAGAGGATAAGAATTGA
23665946 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23666011 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * * *
23666038 CGTTTAAAGCTTCATCTCGCTCTTACAATAACTTCAGAGATATAAAGGTTCATTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23666103 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * * *
23666130 CGTTGGAAGCTTCATCTAGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23666195 CTATAACTTCAAGAGGATAACAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* *
23666222 GGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
*
23666287 CTATAGCTTTC-AGAGGATAAGAATTGA
66 CTATAAC-TTCAAGAGGATAAGAATTGA
* *
23666314 CGTTTGAAGCTTCAT-TTGGCTCTTACTATAACATCAGAGAGATAAAGGTTCATTATCCAACTTT
1 CGTTTGAAGCTTCATCTT-GCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTT
23666378 ACTATAACTTCAAGAGGATAAGAATTTGA
65 ACTATAACTTCAAGAGGATAAGAA-TTGA
* * * *
23666407 GGTTTGAAGCTTCGTCTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGATATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23666472 CTATAACTTCAAGAGGATAAGAATTTGA
66 CTATAACTTCAAGAGGATAAGAA-TTGA
* * *
23666500 CGTTTGAAGCTTCATCTAGCTCTTACAATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23666565 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * *
23666592 CGTTGGAAGCTTCATCTTGCTCTTACTATAAATTCAGGGAGATAAAGGTTCGTTATCCAACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23666657 CTATAACTTCAACAGGATAAGAATTCA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23666684 CATTTGAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23666749 CTATAACTTCAAGAGGATAAGAATTTGA
66 CTATAACTTCAAGAGGATAAGAA-TTGA
* * * *
23666777 GGTTTGAAGCTTCGTC-TGCCTCTTGCTATAACTTTAGAGAGATAAAGGTTCGTTA-CCAACTTT
1 CGTTTGAAGCTTCATCTTG-CTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTT
23666840 ACTATAACTTCAAGAGGATAAGAATTGA
65 ACTATAACTTCAAGAGGATAAGAATTGA
** *
23666868 CGTTTGAAGCTTCATCTACCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23666933 CTATAACTTCAAGAGGATAAGAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * * *
23666960 CGTTGGAAGCTTCATCTTGCTCTTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
* *
23667025 CTATAAGTTCAAGAGGATAATAATTGA
66 CTATAACTTCAAGAGGATAAGAATTGA
* * *
23667052 GGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAATTTTA
1 CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
23667117 CTATAACTTCA
66 CTATAACTTCA
23667128 GGGAGATAAA
Statistics
Matches: 6921, Mismatches: 638, Indels: 142
0.90 0.08 0.02
Matches are distributed among these distances:
90 10 0.00
91 184 0.03
92 5677 0.82
93 1043 0.15
94 7 0.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (92 bp):
CGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTA
CTATAACTTCAAGAGGATAAGAATTGA
Found at i:23667154 original size:132 final size:132
Alignment explanation
Indices: 23666982--23667260 Score: 488
Period size: 132 Copynumber: 2.1 Consensus size: 132
23666972 CATCTTGCTC
*
23666982 TTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTACTATAAGTTCAAGAGGATAATA
1 TTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTACTATAACTTCAAGAGGATAATA
* * * *
23667047 ATTGAGGTTTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAA
66 ATTGAGGTTTGAAACTTCATCTTCCACTTACTATAACTTCAGAGAGACAAGGGTTCGTTATCC-A
23667112 T-T
130 TCT
*
23667114 TTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTACTATAACTTTAAGAGGATAATA
1 TTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTACTATAACTTCAAGAGGATAATA
23667179 ATTGAGGTTTGAAACTTCATCTTCCACTTACTATAACTTCAGAGAGACAAGGGTTCGTTATCCAT
66 ATTGAGGTTTGAAACTTCATCTTCCACTTACTATAACTTCAGAGAGACAAGGGTTCGTTATCCAT
23667244 CT
131 CT
23667246 TTACTATAACTTCAG
1 TTACTATAACTTCAG
23667261 AGGATAAGAA
Statistics
Matches: 140, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
131 2 0.01
132 138 0.99
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (132 bp):
TTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTACTATAACTTCAAGAGGATAATA
ATTGAGGTTTGAAACTTCATCTTCCACTTACTATAACTTCAGAGAGACAAGGGTTCGTTATCCAT
CT
Found at i:23667434 original size:40 final size:40
Alignment explanation
Indices: 23667390--23667545 Score: 118
Period size: 40 Copynumber: 3.6 Consensus size: 40
23667380 CGTCTGGCTC
23667390 TTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAG-GATAAAGGTTCGTTATCCAACT
* * *
23667430 TTACTATAACTTCAAGAGGATAAGAATTTGACGTTTGAAGCTTCATCTAGCT
1 TTACTATAACTTCAAGAGGAT-A-AA---G--G-TT--CG-TT-ATCCAACT
* *
23667482 CTTACTATAACTT-TAGAGAGATAAGGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAG-GATAAAGGTTCGTTATCCAACT
23667523 TTACTATAACTTCAAGAGGATAA
1 TTACTATAACTTCAAGAGGATAA
23667546 GAATTGACGT
Statistics
Matches: 91, Mismatches: 9, Indels: 32
0.69 0.07 0.24
Matches are distributed among these distances:
40 33 0.36
41 15 0.16
42 4 0.04
43 1 0.01
45 3 0.03
46 1 0.01
47 1 0.01
48 3 0.03
50 1 0.01
51 3 0.03
52 11 0.12
53 15 0.16
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (40 bp):
TTACTATAACTTCAAGAGGATAAAGGTTCGTTATCCAACT
Found at i:23667603 original size:92 final size:92
Alignment explanation
Indices: 23667114--23687575 Score: 17861
Period size: 92 Copynumber: 223.3 Consensus size: 92
23667104 TTATCCAATT
* * * * *
23667114 TTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTACTATAACTTTAAGAGGATAATA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * * *
23667179 ATTGAGGTTTGAAACTTCATCTTCCAC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23667206 TTACTATAACTTCAGAGAGACAAGGGTTCGTTATCCATCTTTACTATAACTTC-AGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23667270 ATTGACGTTTGAAGCTTCAT-TTGGCTC
66 ATTGACGTTTGAAGCTTCATCTT-GCTC
* *
23667297 TTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTTACTATAAGTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * * *
23667362 ATTTAAGGTTTGAAGCTTCGTCTGGCTC
66 A-TTGACGTTTGAAGCTTCATCTTGCTC
23667390 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23667455 ATTTGACGTTTGAAGCTTCATCTAGCTC
66 A-TTGACGTTTGAAGCTTCATCTTGCTC
* *
23667483 TTACTATAACTTTAGAGAGATAAGGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23667548 ATTGACGTTGGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * *
23667575 TTACTATAAATTCAGGGAGATAAAGGTTCGTTATCCATCATTACTATAACTTCAACAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23667640 ATTGACATTTGAAACTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23667667 TTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTTACTATAACTTCAAGA-GATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23667731 ATTTGAGGTTTGAAGCTTCATC-TGACTC
66 A-TTGACGTTTGAAGCTTCATCTTG-CTC
* *
23667759 TTACAATAACTTCAGAGAGATAAAGGTTCGTTATCCAACGTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23667824 ATTGACGTTTGAAGCTTCATCTAGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23667851 TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTACTATAACTT-AAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23667915 ATTGACGTTGGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23667942 TTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCAACATTACCATAACTTCAAGAGGATAACA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23668007 ATTGAGGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23668034 TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTACTATAACTTTC-AGAGGATAAG
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAAC-TTCAAGAGGATAAG
*
23668098 ATTTGACGTTTGAAGCTTCAT-TTGGCTC
65 AATTGACGTTTGAAGCTTCATCTT-GCTC
* * * *
23668126 TTACTATAGCTTCAGAGAGAAAAAGGTTCATTATTCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23668191 ATTGAGGTTTGAAGCTTCGTCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23668218 TTACTATAACTTCAGAGAGATAAACGTTCGTTATCCAACTTTATTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23668283 ATTAACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23668310 TTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* ** *
23668375 ATTGAGGTTTGAAGCTTTGTCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23668402 TTACAATAACTTCAAAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23668467 ATTGAGGTTTGAAACTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * *
23668494 TTA-TAATAACTTCCGAGAGATAAAGGTTCATTATCCAACTTTATTATAACTTTAAGAGGATAAC
1 TTACT-ATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
**
23668558 AATTGAAATTTGAAGCTTCATCTTGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* *
23668586 TTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTTACTATAACTTCAAGATGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23668651 ATTTGAGGTTTGAAGCTTCGTC-TGACTC
66 A-TTGACGTTTGAAGCTTCATCTTG-CTC
*
23668679 TTACAATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
**
23668744 ATTGACGTTTGAAGCTTCATCTACCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23668771 TTACTATAACTTCAGAGAGATAATGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* **
23668836 ATTGACGTTGGTGGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * * *
23668863 TTACTATAACTTCAGGGAGATAAAGGTTCGGTATCCGACATTACTATAAGTTCAAGAGGATAACA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23668928 ATTGAGGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23668955 TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTACTATAAC-TCTAAGAGGATAAG
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTC-AAGAGGATAAG
23669019 AATTGACGTTTGAAGCTTCAT-TTGGCTC
65 AATTGACGTTTGAAGCTTCATCTT-GCTC
* * * *
23669047 TTACTATAGCTTCAGAGAGATAACGGTTCATTATTCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23669112 ATTTGAGGTTTGAAGCTTCATCTGGCTA
66 A-TTGACGTTTGAAGCTTCATCTTGCTC
* *
23669140 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAAATTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23669205 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
23669232 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23669297 ATTTGAGGTTTGAAGCTTCATCTGGTTC
66 A-TTGACGTTTGAAGCTTCATCTTGCTC
23669325 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23669390 ATTGACGTTTGAAGCTTCAT-TTGGCTC
66 ATTGACGTTTGAAGCTTCATCTT-GCTC
*
23669417 TTACTGTAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* ** *
23669482 ATTTGAGGTTTGAAGCTTTGTCTGGCTC
66 A-TTGACGTTTGAAGCTTCATCTTGCTC
*
23669510 TTACTATAACTTCAAAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23669575 ATTGAGGTTTGAAACTTCATCTTTCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * *
23669602 TTA-TAATAACTTCCGAGAGATAAAGGTTCATTATCCAACTTTATTATAACTTTAAGAGGATAAC
1 TTACT-ATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
**
23669666 AATTGAAATTTGAAGCTTCATCTTGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23669694 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAATTTTATTATAACTTCAAGAGCATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23669759 ATTGTCGTTTGAAGCTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
23669786 TTACTATAACTTCAGAGA-ATAAAGGTTCGTTATCCAACTTTACTATAACTTTC-AGAGGATAAG
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAAC-TTCAAGAGGATAAG
23669849 AATTGACGTTTGAAGCTTCATCTTGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* *
23669877 TTACTATAACTTCAGGGAGATAAAGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23669942 ATTGATGTTGGAATCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23669969 TTACTATAACTTCA-AGGAGATAAAGGTTCGTTATCCAACATTACTATAACTTCAAGAGGATAAG
1 TTACTATAACTTCAGA-GAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
* *
23670033 AATTGACATTTGAAGCTTCATCTGGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
*
23670061 TTACTATAACTTCAGAGAGATAAGGGTTCGTTAT-CAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23670125 ATTGACATTGGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23670152 TTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCGACATTACTATAACTTCAAGAGGATAATA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23670217 ATTGAGGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23670244 TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCATCTTTACTATAACTTC-AGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23670308 ATTGACGTTTGAAGCTTCAT-TTGGCTC
66 ATTGACGTTTGAAGCTTCATCTT-GCTC
*
23670335 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTCACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23670400 ATTTGACGTTTGAAGCTTCATCTAGCTC
66 A-TTGACGTTTGAAGCTTCATCTTGCTC
* *
23670428 TTACAATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23670493 ATTGACGTTGGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * *
23670520 TTACTATAAATTCAGGGAGATAAAGGTTTGTTATCCAACATTACTATAACTTCAACAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23670585 ATTGACATTTGAAGTTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23670612 TTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23670677 ATTGAGGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23670704 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCAAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23670769 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23670796 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACAATGACTTCAA-AGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * * *
23670860 ATTTTAGGTTTGAAGCTTCTTCTGGCTC
66 A-TTGACGTTTGAAGCTTCATCTTGCTC
23670888 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23670953 ATTGAGGTTTGAAACTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * *
23670980 TTA-TAATAACTTCTGAGAGATAAAGGTTCATTATCCAACTTTATTATAACTTTAAGAGGATAAT
1 TTACT-ATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
* *
23671044 AA-TGACATTTGAAGCTTCCTCTTGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* *
23671071 TTACTATAACTTCAGAGAGATAAAGGTTCGTTAACCAACTTTACTATAACTTCAAGTGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23671136 ATTGTCGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23671163 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAATTTTACTGTAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23671228 ATTGTCGTTTGAAGCTTCATCTAGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23671255 TTACTATAACTTCAGAGAAATAAAGGTTCCTTATCCAACTTTTCTAAAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23671320 ATCGAGGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * **
23671347 TTACTATAACTTTAGAGAGATAAGGGTTCGTTATAAAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23671412 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23671439 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTCCTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23671504 ATTGAGGTTTGAAACTTCCTCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23671531 TTACTATAACTTCAGAGAGATAAGGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23671596 ATTGACGATTGAAGCTTTATCTTTCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23671623 TTACTATAACTTTAGAGAGATAAAGTTTCGTTATCCAACTTTACTATAACATCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23671688 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23671715 TTACTATAACTTCAGAGAGATAAAGGTTCGATATCCAACTTTACTATAACTTGAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23671780 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
23671807 TTACT-TCAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
1 TTACTAT-AACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
* *
23671871 AATTGACGTTTGAAGCTTTATCCTGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* *
23671899 TTACTATAACTTCAGAGAGATAATGGTTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23671964 ATTGAGGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23671991 TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTACTATAACTTTC-AGAGGATAAG
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAAC-TTCAAGAGGATAAG
*
23672055 AATTGACGTTTGAAGCTTCAT-TTGGCAC
65 AATTGACGTTTGAAGCTTCATCTT-GCTC
*
23672083 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACGATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23672148 ATTGACGTTTAAAGCTTCATCTAGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23672175 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACATTT-TTATAACTTCAAGAGGATACG
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAAC-TTTACTATAACTTCAAGAGGATAAG
* *
23672239 AATTGAGGTTTGAAACTTCATCTTGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23672267 TTACTATAACTTCAGAGACATAAGGGTTCATTATCCAACTTAACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23672332 ATTAACGTTTCAAGCTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23672359 TAACTATAACTTCAGAGAGATAAAGTTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23672424 ATTGACGTTTGAAGCTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23672451 TTACTATAACTTCAGAGAGATAAAGGTTCGATATCCAACTTTACTATAACTTGAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23672516 ATAGACGTTTGAAGCTTCATC-TGACTC
66 ATTGACGTTTGAAGCTTCATCTTG-CTC
* *
23672543 TTACT-TAACTTCAGAGAGATAAAGGTTCGATATCCAACTTTACTATAACTTGAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23672607 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23672634 TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAAATTTACTATAACTTCAAGAGGGTAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23672699 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23672726 TTACTACAACTTCAGAGTGATAAAGGTCCGTTATCCAAATTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23672791 ATTGACATTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23672818 TTACTAGAACTTCAGAGAGATAAAGGTTCTTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23672883 ATTGTCGTTTGAAGCTTCATCTTGCCC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23672910 TTACTATAACTTCGGAGAGATAAATGTTTGTTATCCAACTTTACTATAACTTCAAAAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23672975 ATTGACGTTTGAAGCTTCATCTTGCAC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23673002 TTACTATAACTTTAGAGAGAT-AAGGGTCGTTATCCAAATTTATTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23673066 ATTGACGTTTGAAGCTTTATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23673093 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGAATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23673158 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23673185 TTATTATAACTTCAGAGAGATAAA-GTTCCTTCTCCAACTTTACTATAACTTCAGGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23673249 ATTGACGTTGGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23673276 TTACTATAACTTCAGGGAGATAAAGGTTCGTTATCCAACATTACTATAACTTCAAGAGGAAAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23673341 ATTGACATTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23673368 TTACTATAACTTTAGAGAGATAAAGGTTCGTTATCCAACTTTACAATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23673433 ATTAATGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23673460 TTACTATAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTCACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23673525 ATTAACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23673552 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTAAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23673617 ATTTGATGTTTGAAGCTTCATCTGGCTC
66 A-TTGACGTTTGAAGCTTCATCTTGCTC
*
23673645 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * * *
23673710 ATTAAGGTTTGAAACTTCATCATGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * *
23673737 TTA-TATAACTTCAGAGAGATAAAGGTTCATTATCCAATTTTATTATCACTTCAAGAGGATAACA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23673801 ATTGACGTTTGAAGCTTCATCTTCCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23673828 TTACTATAACTTCAGAGAGACAAAGGTTCGTTATCCAACTTTACAATAACTTCAATAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23673893 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23673920 TTACTATAACTTCAGACAGATAAAGGTTCGTTATCCAATTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23673985 ATTGACGTTTGAAGCTTCATCTAGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23674012 TTACTATAACTTTAGAGAGATAAAGGTTCGTTATCCAACATTACTAAAACTTCAAGAGAATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23674077 ATTGAGGTTTGAAGCTACATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23674104 TTACTATAACTTCACTA-AGATAAAGGTTCGTTATCCAACTTTACTATCACTTCAAGAGGAT-AC
1 TTACTATAACTTCA-GAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
* * *
23674167 AATTGAGGCTTGAAGCTTTATCTTGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23674195 TTACTATAACTTCAAAGAGATGAAGGTTCGTTATCCAAC-TTACAATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23674259 ATTCACGTTTGAAG-TTCATCTAGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * *
23674285 TTACTATAACTTCCGAGATATGAAGGTTCGTTATCCAGCTTTACTATAA-TTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23674349 ATTGACGTTGGAAGCTTCATCTTGCTT
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23674376 TTACTATAACTTCAGGGAGATAAAGGTTCATTATCCAACATTACTATAACTTCAAGAGGGTAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23674441 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23674468 TTACTATAGCTTCAGAGCGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23674533 ATTGACGTTTGAAGCTTGATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * * * *
23674560 TTACTATAACTTCAGGGACATAAAGGTTCCTTTTTCGACTTTACTATAACTTGAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23674625 ATTGACGTTGGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23674652 ATACTATAACTTCAGAGAGATAAAGGTTCGTTTTCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23674717 ATTGATGTTTGAAGCTTCATCTTGC-C
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23674743 ATTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTACTATAGCTTCAAGAGGATAAG
1 -TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
* * *
23674808 AATTGACATTTGATGCTTCATCTGGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23674836 TTACTATAACTTCAGAGAGATGAGGGTTCGTTATCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23674901 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23674928 TTACTATAACTTCAAAGTGATAAAGGTTCGTTATCCAACTTTACTATAACTTC-AGAGTGAT-A-
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAG-GATAAG
* ***
23674990 AA--G--G-TT--CG-TT-ATCCAACT-
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* ***
23675008 TTACTATAACTTCAAGAG-GATAAGCATTGACGTTTAAAGCTTCATCTTGCTCTTACTATAACTT
1 TTACTATAACTTC-AGAGAGATAA--A--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
* * ***
23675072 -TAGAGAGAT-A-AA--G-C--TT--CG-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23675100 TTACTACAACTTCAAGAG-GAT-AAGAATTCACGTTTAAAGCTTCATCTAGCTCTTACTTTAACT
1 TTACTATAACTTC-AGAGAGATAAAG-GTT--CG-TT--A---TC--C-AACT-TTACTATAACT
* ***
23675163 TC-AGAGAGAT--GAA--G--G-TT--CG-TT-ATCCAACT-
52 TCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23675192 TTACTATAACTTCAAGAG-GAT-AAGAATTGACGTTTGAAGCTTCATCTAGCTTACTATAACTTC
1 TTACTATAACTTC-AGAGAGATAAAG-GTT--CG-TT--A--TCCAACT---TTACTATAACTTC
* *
23675255 -AGAGAGATAA-AAGTT--CG-TT--A--TCCAACTT--TC
54 AAGAG-GATAAGAA-TTGACGTTTGAAGCTTCATCTTGCTC
* * *** *
23675285 ---CTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTTATCTTGCTCCTACTATAACTT
1 TTACTATAACTTC-AGAGAGAT---AA---AGG-TT----CGTTATCCAACT-TTACTATAACTT
* ***
23675346 C-AGAGAGATAAG----G--G-TT-CA--TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * ***
23675374 TTACTATAACTTAAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCTCTTACTATAACTT
1 TTACTATAACTT-CAGAGAGAT-A-AA--G--G-TT----CGTTATCCAACT-TTACTATAACTT
* * * **
23675438 C-AGAGTGATAAG-ATT--TGTTATCCAA-CTTTA-CTAT-AAC
53 CAAGAG-GATAAGAATTGACGTT-T-GAAGCTTCATCT-TGCTC
* * *** * * * * * *
23675475 TT-CAAGAGGATAAGAATTGACGTTTGAAGCTTCATT-T--AGA--TTACTATAACTT-GAGAGA
1 TTACTATAACTTCAG-A--GA-G-ATAAAGGTTCGTTATCCA-ACTTTACTATAACTTCAAGAG-
* * *
23675533 GATAA-AGGTT--CG-TT--A--TCCAACTT--TC
59 GATAAGA-ATTGACGTTTGAAGCTTCATCTTGCTC
* * * ***
23675558 ---CAATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCTCTTACTATAACTT
1 TTACTATAACTTC-AGAGAGAT---AA---AGGTTCG----TT-ATCCAACT-TTACTATAACTT
* ***
23675619 C-AGAGAGATAAG----G--G-TT-CA--TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* ***
23675647 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCTCTTACTATAACTT
1 TTACTATAACTTC-AGAGAGAT-A-AA--G--G-TT----CGTTATCCAACT-TTACTATAACTT
***
23675711 C-AGAGAGAT-A-AA--G--GTTT---G-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* ***
23675739 TTACTATAACTTCA-AGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCTCTTACTATAACTT
1 TTACTATAACTTCAGAGA-GAT-A-AA--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
***
23675803 C-AGAGAGAT-A-AA--G--GTTT---G-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * * ** * ** * *
23675831 TTACGATAACTGCAAGAG-GAT-AAGAATTGACGTT-TGAAACTTCATCT-TGCTCTTACAACAA
1 TTACTATAACTTC-AGAGAGATAAAG-GTT--CGTTATCCAACTTTA-CTAT-AACTT-CAAGAG
** * * ***
23675892 CTTCAGAGAGA-TAAGCG-TT-CA--TT-ATCCAACT-
59 GAT-A-AGA-ATTGA-CGTTTGAAGCTTCATCTTGCTC
* ***
23675923 TTACTATAACTTCA-AGAGGATAAGAATTGACGTTTGAAGCTTTATCTTGCTCTTACTATAACTT
1 TTACTATAACTTCAGAGA-GAT-A-AA--G--G-TT----CGTTATCCAACT-TTACTATAACTT
* * ***
23675987 -TAGAGAGAT---AA---A-GTTT--CG-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * ***
23676015 TTACTATAACATCA-AGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCTCTTACTATAACTT
1 TTACTATAACTTCAGAGA-GAT-A-AA--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
* * * *
23676079 C-AG-GGACATA-AA--G--G-TT---CCTT--TTTCGACT-
53 CAAGAGGATA-AGAATTGACGTTTGAAGCTTCATCTTG-CTC
* * * *
23676107 TTACTATAACTTGA-AGAGGAT-AAGAATTGACGTTGGAAGCTTCATCTTGCTCATACTATAACT
1 TTACTATAACTTCAGAGA-GATAAAG-GTT--CGTT---A--TCCAAC-T--T--TACTATAACT
* **
23676170 TC-AGAGAGATAA-AGGTT--CG-TT-----TTC--C-AACT-
52 TCAAGAG-GATAAGA-ATTGACGTTTGAAGCTTCATCTTGCTC
* * *** *
23676199 TTACTATAACTTTAAGAG-GATAAGAATTGATGTTTGAAGCTTCATCTTGCCATTACTATAACTT
1 TTACTATAAC-TTCAGAGAGAT-A-AA--G--G-TT--CG-TT-ATC-CAACTTTACTATAACTT
** * *
23676263 C-AGAGAGATAAGGGTT--CGTTATCCAA-CTTTA-CTATAGCT-
53 CAAGAG-GATAAGAATTGACGTT-T-GAAGCTTCATCT-T-GCTC
* * * ** * * * **
23676302 TTAAGTGGATAAGAATT--GACATTTGATGCTTC---ATCTGACTCTTACTATAACTTC-AGA-G
1 TT-ACT--AT-A-ACTTCAGAGAGATAAAGGTTCGTTATCCAACT-TTACTATAACTTCAAGAGG
* * * ***
23676360 ---AG-A-TGAGGGTT--CG-TT-ATCCAACT-
60 ATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * ***
23676383 TTACTATAACTTTAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTGGCTCTTACTATAACTT
1 TTACTATAAC-TTCAGAGAGAT-A-AA--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
* ***
23676447 CAA-AGTGAT-A-AA--G--G-TT--CG-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* *
23676475 TTACTATAACTTCAGAGTGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGC
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23676540 ATTGACGTTTAAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23676567 TTACTATAACTTTAGAAAGATAAAGATTCGTTATCCAACTTTACTACAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23676632 ATTCACGTTTAAAGCTTCATCTAGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23676659 TTACTTTAACTTTAGAGAGATGAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23676724 ATTGACGTTTGAAGCTTCATCTAG--C
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23676749 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTCCTATAAATTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23676814 ATTGAGGTTTGAAACTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23676841 CTACTATAACTTCAGAGAGATAAGGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23676906 ATTGACGTTTGAAACTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23676933 TTACTATAACTTCAGAGTGAT-AAGATTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23676997 ATTGACGTTCGAAGCTTCAT-TTAG--A
66 ATTGACGTTTGAAGCTTCATCTT-GCTC
* *
23677022 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTCCTATAAATTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23677087 ATTGAGGTTTGAAACTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23677114 TTACTATAACTTCAGAGAGATAAGGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23677179 ATTGACGTTTGAAGCTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23677206 TTACTATAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23677271 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23677298 TTACTATAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACGATAACTGCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23677363 ATTGACGTTTGAAACTTCATCTTGATC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23677390 TTACAATAACTTCAGAGAGAT-AAGCGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAG
1 TTACTATAACTTCAGAGAGATAAAG-GTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
*
23677454 AATTGACGTTTGAAGCTTTATCTTGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23677482 TTACTATAACTTTAGAGAGATAAAGTTTCGTTATCCAACTTTACTATAACATCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23677547 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23677574 TTACTATAACTTTAGAGAGATAAAGGTTCGTTATCCAACATTACTAAAACTTCAAGAGAATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23677639 ATTGAGGTTTGAAGCTACATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23677666 TTACTATAACTTCACTA-AGATAAAGGTTCGTTATCCAACTTTACTATCACTTCAAGAGGATAAC
1 TTACTATAACTTCA-GAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
* * *
23677730 AATTGAGGCTTGAAGCTTTATCTTGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23677758 TTACTATAACTTCAAAGAGATGAAGGTTCGTTATCCAAC-TTACAATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23677822 ATTCACGTTTGAAG-TTCATCTAGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * *
23677848 TTACTATAACTTCCGAGATATGAAGGTTCGTTATCCAGCTTTACTATAA-TTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23677912 ATTGACGTTGGAAGCTTCATCTTGCTT
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23677939 TTACTATAACTTCAGGGAGATAAAGGTTCATTATCCAACATTACTATAACTTCAAGAGGGTAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23678004 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23678031 TTACTATAGCTTCAGAGCGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23678096 ATTGACGTTTGAAGCTTGATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * * * *
23678123 TTACTATAACTTCAGGGACATAAAGGTTCCTTTTTCGACTTTACTATAACTTGAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23678188 ATTGACGTTGGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23678215 ATACTATAACTTCAGAGAGATAAAGGTTCGTTTTCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23678280 ATTGATGTTTGAAGCTTCATCTTGC-C
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23678306 ATTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTACTATAGCTTCAAGAGGATAAG
1 -TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
* * *
23678371 AATTGACATTTGATGCTTCATCTGGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23678399 TTACTATAACTTCAGAGAGATGAGGGTTCGTTATCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23678464 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23678491 TTACTATAACTTCAAAGTGATAAAGGTTCGTTATCCAACTTTACTATAACTTC-AGAGTGAT-A-
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAG-GATAAG
* ***
23678553 AA--G--G-TT--CG-TT-ATCCAACT-
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* ***
23678571 TTACTATAACTTCAAGAG-GATAAGCATTGACGTTTAAAGCTTCATCTTGCTCTTACTATAACTT
1 TTACTATAACTTC-AGAGAGATAA--A--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
* * *
23678635 -TAGAGAGATAA-AGATT--CG-TT--A--TCCA--AT--T-
53 CAAGAG-GATAAGA-ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23678663 TTACTACAACTTCAAGAG-GAT-AAGAATTCACGTTTAAAGCTTCATCTAGCTCTTACTTTAACT
1 TTACTATAACTTC-AGAGAGATAAAG-GTT--CG-TT--A---TC--C-AACT-TTACTATAACT
* ***
23678726 TC-AGAGAGAT--GAA--G--G-TT--CG-TT-ATCCAACT-
52 TCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23678755 TTACTATAACTTCAAGAG-GAT-AAGAATTGACGTTTGAAGCTTCATCTAGCTTACTATAACTTC
1 TTACTATAACTTC-AGAGAGATAAAG-GTT--CG-TT--A--TCCAACT---TTACTATAACTTC
* *
23678818 -AGAGAGATAA-AAGTT--CG-TT--A--TCCAACTT--TC
54 AAGAG-GATAAGAA-TTGACGTTTGAAGCTTCATCTTGCTC
* * *** *
23678848 ---CTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTTATCTTGCTCCTACTATAACTT
1 TTACTATAACTTC-AGAGAGAT---AA---AGG-TT----CGTTATCCAACT-TTACTATAACTT
* ***
23678909 C-AGAGAGATAAG----G--G-TT-CA--TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * ***
23678937 TTACTATAACTTAAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCTCTTACTATAACTT
1 TTACTATAACTT-CAGAGAGAT-A-AA--G--G-TT----CGTTATCCAACT-TTACTATAACTT
* * * **
23679001 C-AGAGTGATAAG-ATT--TGTTATCCAA-CTTTA-CTAT-AAC
53 CAAGAG-GATAAGAATTGACGTT-T-GAAGCTTCATCT-TGCTC
* * *** * * * * * *
23679038 TT-CAAGAGGATAAGAATTGACGTTTGAAGCTTCATT-T--AGA--TTACTATAACTT-GAGAGA
1 TTACTATAACTTCAG-A--GA-G-ATAAAGGTTCGTTATCCA-ACTTTACTATAACTTCAAGAG-
* * *
23679096 GATAA-AGGTT--CG-TT--A--TCCAACTT--TC
59 GATAAGA-ATTGACGTTTGAAGCTTCATCTTGCTC
* * ***
23679121 ---CTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCTCTTACTATAACTT
1 TTACTATAACTTC-AGAGAGAT---AA---AGGTTCG----TT-ATCCAACT-TTACTATAACTT
* ***
23679182 C-AGAGAGATAAG----G--G-TT-CA--TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* ***
23679210 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCTCTTACTATAACTT
1 TTACTATAACTTC-AGAGAGAT-A-AA--G--G-TT----CGTTATCCAACT-TTACTATAACTT
***
23679274 C-AGAGAGAT-A-AA--G--GTTT---G-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* ***
23679302 TTACTATAACTTCA-AGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCTCTTACTATAACTT
1 TTACTATAACTTCAGAGA-GAT-A-AA--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
***
23679366 C-AGAGAGAT-A-AA--G--GTTT---G-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * * ** * ** * *
23679394 TTACGATAACTGCAAGAG-GAT-AAGAATTGACGTT-TGAAACTTCATCT-TGCTCTTACAACAA
1 TTACTATAACTTC-AGAGAGATAAAG-GTT--CGTTATCCAACTTTA-CTAT-AACTT-CAAGAG
** * * ***
23679455 CTTCAGAGAGA-TAAGCG-TT-CA--TT-ATCCAACT-
59 GAT-A-AGA-ATTGA-CGTTTGAAGCTTCATCTTGCTC
* ***
23679486 TTACTATAACTTCA-AGAGGATAAGAATTGACGTTTGAAGCTTTATCTTGCTCTTACTATAACTT
1 TTACTATAACTTCAGAGA-GAT-A-AA--G--G-TT----CGTTATCCAACT-TTACTATAACTT
* * ***
23679550 -TAGAGAGAT---AA---A-GTTT--CG-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * ***
23679578 TTACTATAACATCA-AGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCTCTTACTATAACTT
1 TTACTATAACTTCAGAGA-GAT-A-AA--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
* * ** *
23679642 C-AG-GGACATA-AA--G--G-TT---CCTTTTTCGT-CT-
53 CAAGAGGATA-AGAATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23679670 TTACTATAACTTGA-AGAGGAT-AAGAATTGACGTTGGAAGCTTCATCTTGCTCATACTATAACT
1 TTACTATAACTTCAGAGA-GATAAAG-GTT--CGTT---A--TCCAAC-T--T--TACTATAACT
* **
23679733 TC-AGAGAGATAA-AGGTT--CG-TT-----TTC--C-AACT-
52 TCAAGAG-GATAAGA-ATTGACGTTTGAAGCTTCATCTTGCTC
* * *** *
23679762 TTACTATAACTTTAAGAG-GATAAGAATTGATGTTTGAAGCTTCATCTTGCCATTACTATAACTT
1 TTACTATAAC-TTCAGAGAGAT-A-AA--G--G-TT--CG-TT-ATC-CAACTTTACTATAACTT
** * *
23679826 C-AGAGAGATAAGGGTT--CGTTATCCAA-CTTTA-CTATAGCT-
53 CAAGAG-GATAAGAATTGACGTT-T-GAAGCTTCATCT-T-GCTC
* * * * ** * * * ***
23679865 TCAAGTGGATAAGAATT--GACATTTGATGCTTC---ATCTGGCTCTTACTATAACTTC-AGA-G
1 T-TACT--AT-A-ACTTCAGAGAGATAAAGGTTCGTTATCCAACT-TTACTATAACTTCAAGAGG
* * * ***
23679923 ---AG-A-TGAGGGTT--CG-TT-ATCCAACT-
60 ATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * ***
23679946 TTACTATAACTTTAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTGGCTCTTACTATAACTT
1 TTACTATAAC-TTCAGAGAGAT-A-AA--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
* ***
23680010 CAA-AGTGAT-A-AA--G--G-TT--CG-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* *
23680038 TTACTATAACTTCAGAGTGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGC
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23680103 ATTGACGTTTAAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23680130 TTACTATAACTTTAGAGAGATAAAGATTCGTTATCCAACTTTACTACAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23680195 ATTCACGTTTAAAGCTTCATCTAGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23680222 TTACTTTAACTTCAGAGAGATGAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23680287 ATTGACGTTTGAAGCTTCATCTAG--C
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23680312 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTCCTATAAATTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23680377 ATTGAGGTTTGAAACTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23680404 CTACTATAACTTCAGAGAGATAAGGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23680469 ATTGACGTTTGAAGCTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23680496 TTACTATAACTTCAGAGTGAT-AAGATTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23680560 ATTGACGTTCGAAGCTTCAT-TTAG--A
66 ATTGACGTTTGAAGCTTCATCTT-GCTC
* *
23680585 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTCCTATAAATTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23680650 ATTGAGGTTTGAAACTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23680677 TTACTATAACTTCAGAGAGATAAGGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23680742 ATTGACGTTTGAAGCTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23680769 TTACTATAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23680834 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23680861 TTACTATAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACGATAACTGCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23680926 ATTGACGTTTGAAACTTCATCTTGATC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23680953 TTA-TAATAACTTCAGAGAGAT-AAGCGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAA
1 TTACT-ATAACTTCAGAGAGATAAAG-GTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAA
*
23681016 GAATTGACGTTTGAAGCTTTATCTTGCTC
64 GAATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23681045 TTACTATAACTTTAGAGAGATAAAGTTTCGTTATCCAACTTTACTATAACATCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23681110 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * * * *
23681137 TTACTATAACTTCAGGGACATAAAGGTTCCTTTTTCGACTTTACTATAACTTGAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23681202 ATTGACGTTGGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23681229 ATACTATAACTTCAGAGAGATAAAGGTTCGTTTTCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23681294 ATTAATGTTTGAAGCTTCATCTTGC-C
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23681320 ATTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTACTATAGCTTCAAGAGGATAAG
1 -TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
* * *
23681385 AATTGACATTTGATGCTTCATCTGGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23681413 TTACTATAAGTTCAGAGAGATGAGGGTTCGTTATCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23681478 ATTGACGTTTGAAGCTTCGTCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23681505 TTACTATAACTTCAAAGTGATAAAGGTTCGTTATCCAACTTTACTATAACTTC-AGAGTGAT-A-
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAG-GATAAG
* ***
23681567 AA--G--G-TT--CG-TT-ATCCAACT-
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* **
23681585 TTACTATAACTTCAAGAG-GATAAGCATTGACGTTTAAAGCTTCATCCTGCTCTTACTATAACTT
1 TTACTATAACTTC-AGAGAGATAA--A--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
* **
23681649 -TAGAGAGATAA-AGATT--CG-TT--A---TC--C-AACT-
53 CAAGAG-GATAAGA-ATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23681677 TTACTACAACTTCAAGAG-GATAA-GAATTCACGTTTAAAGCTTCATCTAGCTCTTACTTTAACT
1 TTACTATAACTTC-AGAGAGATAAAG-GTT--CG-TT--A---TC--C-AACT-TTACTATAACT
* ***
23681740 TC-AGAGAGAT--GAA--G--G-TT--CG-TT-ATCCAACT-
52 TCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23681769 TTACTATAACTTCAAGAG-GAT-AAGAATTGACGTTTGAAGCTTCATCTAGCTTACTATAACTTC
1 TTACTATAACTTC-AGAGAGATAAAG-GTT--CG-TT--A--TCCAACT---TTACTATAACTTC
* * *
23681832 -AGAGAGATAA-AGGTT--CG-TT--A--TCCAACTT--TC
54 AAGAG-GATAAGA-ATTGACGTTTGAAGCTTCATCTTGCTC
* * *** *
23681862 ---CTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCTCCTACTATAACTT
1 TTACTATAACTTC-AGAGAGAT---AA---AGGTTCG----TT-ATCCAACT-TTACTATAACTT
* ***
23681923 C-AGAGAGATAAG----G--G-TT-CA--TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* ***
23681951 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGGAGCTTTATCTTGCTCTTACTATAACTT
1 TTACTATAACTTC-AGAGAGAT-A-AA--G--G-TT----CGTTATCCAACT-TTACTATAACTT
* * * **
23682015 C-AGAGTGATAAG-ATT--TGTTATCCAA-CTTTA-CTAT-AAC
53 CAAGAG-GATAAGAATTGACGTT-T-GAAGCTTCATCT-TGCTC
* * *** * * * * ***
23682052 TT-CAAGAGGAT-A-AGA-ATTGACGTTTGAAGCTTTATCTTGCTCTTACTATAACTTC-AGAGT
1 TTACTATAACTTCAGAGAGA-TAAAGGTT----CGTTATCCAACT-TTACTATAACTTCAAGAG-
* * * **
23682112 GATAAG-ATT--TGTTATCCAA-CTTTA-CTAT-AAC
59 GATAAGAATTGACGTT-T-GAAGCTTCATCT-TGCTC
* * *** ** * **
23682143 TT-CAAGAGGAT-A-AGA-ATTGACGTTCGAAGCTTCATTTAGA--TTACTATAACTTC-AGAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTC---G-TT-ATCCA-ACTTTACTATAACTTCAAGAG-
* * *
23682201 GATAA-AGGTT--CG-TT--A--TCCAACTT--TC
59 GATAAGA-ATTGACGTTTGAAGCTTCATCTTGCTC
* * ***
23682226 ---CTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCTCTTACTATAACTT
1 TTACTATAACTTC-AGAGAGAT---AA---AGGTTCG----TT-ATCCAACT-TTACTATAACTT
* ***
23682287 C-AGAGAGATAAG----G--G-TT-CA--TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* ***
23682315 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCTCTTACTATAACTT
1 TTACTATAACTTC-AGAGAGAT-A-AA--G--G-TT----CGTTATCCAACT-TTACTATAACTT
***
23682379 C-AGAGAGAT-A-AA--G--GTTT---G-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* ***
23682407 TTACTATAACTTCA-AGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCTCTTACTATAACTT
1 TTACTATAACTTCAGAGA-GAT-A-AA--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
***
23682471 C-AGAGAGAT-A-AA--G--GTTT---G-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * * *** *
23682499 TTACGATAACTGCAAGAG-GATAAGAATTGACGTTTGAAACTTCATCTTGCTCTTACAATAACTT
1 TTACTATAACTTC-AGAGAGAT-A-AA--G--GTTCG----TT-ATCCAACT-TTACTATAACTT
* ***
23682563 C-AGAGAGAT---AA--G-CG-TT-CA--TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* ***
23682591 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCTCTTACTATAACTT
1 TTACTATAACTTC-AGAGAGAT-A-AA--G--G-TT----CGTTATCCAACT-TTACTATAACTT
* * ***
23682655 -TAGAGAGAT---AA---A-GTTT--CG-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * ***
23682683 TTACTATAACATCA-AGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCTCTTACTATAACTT
1 TTACTATAACTTCAGAGA-GAT-A-AA--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
* * * *
23682747 C-AG-GGACATA-AA--G--G-TT---CCTT--TTTCGACT-
53 CAAGAGGATA-AGAATTGACGTTTGAAGCTTCATCTTG-CTC
* * * *
23682775 TTACTATAACTTGA-AGAGGAT-AAGAATTGACGTTGGAAGCTTCATCTTGCTCATACTATAACT
1 TTACTATAACTTCAGAGA-GATAAAG-GTT--CGTT---A--TCCAAC-T--T--TACTATAACT
* **
23682838 TC-AGAGAGATAA-AGGTT--CG-TT-----TTC--C-AACT-
52 TCAAGAG-GATAAGA-ATTGACGTTTGAAGCTTCATCTTGCTC
* * *** *
23682867 TTACTATAACTTTAAGAG-GATAAGAATTGATGTTTGAAGCTTCATCTTGCCATTACTATAACTT
1 TTACTATAAC-TTCAGAGAGAT-A-AA--G--G-TT--CG-TT-ATC-CAACTTTACTATAACTT
* ***
23682931 C-AGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23682959 TTACTATAGCTTCAAGAG-GATAA-GAATTGACATTTGATGCTTCATCTGGCTCTTACTATAACT
1 TTACTATAACTTC-AGAGAGATAAAG-GTT--C-GTT-AT-C--CA----ACT-TTACTATAACT
* * * ***
23683022 TC-AGA-G---AG-A-TGAGGGTT--CG-TT-ATCCAACT-
52 TCAAGAGGATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* * ***
23683051 TTACTATAACTTTAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTGGCTCTTACTATAACTT
1 TTACTATAAC-TTCAGAGAGAT-A-AA--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTT
* ***
23683115 CAA-AGTGAT-A-AA--G--G-TT--CG-TT-ATCCAACT-
53 CAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCTC
* *
23683143 TTACTATAACTTCAGAGTGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGC
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23683208 ATTGACGTTTAAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23683235 TTACTATAACTTTAGAGAGATAAAGATTCGTTATCCAACTTTACTACAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23683300 ATTCACGTTTAAAGCTTCATCTAGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23683327 TTACTTTAACTTCAGAGAGATGAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23683392 ATTGACGTTTGAAGCTTCATCTAG--C
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23683417 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTCCTATAAATTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23683482 ATTGAGGTTTGAAACTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23683509 CTACTATAACTTCAGAGAGATAAGGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23683574 ATTGACGTTTGAAGCTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23683601 TTACTATAACTTCAGAGTGAT-AAGATTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23683665 ATTGACGTTTGAAGCTTCAT-TTAG--A
66 ATTGACGTTTGAAGCTTCATCTT-GCTC
* *
23683690 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTCCTATAAATTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23683755 ATTGAGGTTTGAAACTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23683782 TTACTATAACTTCAGAGAGATAAGGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23683847 ATTGACGTTTGAAGCTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23683874 TTACTATAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23683939 ATTGACGTTTGGAA-CTTCATCTTGCTC
66 ATTGACGTTT-GAAGCTTCATCTTGCTC
* *
23683966 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTCCTATAAATTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23684031 ATTGAGGTTTGAAACTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23684058 TTACTATAACTTCAGAGAGATAAGGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23684123 ATTGACGTTTGAAGCTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23684150 TTACTATAACTTTAGAGAGATAAAAGTTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23684215 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23684242 TTACTATAACTTCAGAGAGATAAAGGTTCGATATCCAACTTCACTATAACTTGAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23684307 ATAGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23684334 TTACTACAACTTCAGAGAGATAAAGGTTCGTTATCCAATTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23684399 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23684426 TTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23684491 ATTGACGTTGGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23684518 TTACTATAACTTCAGTGTGATAAAGGTTCGTTATCCAACATTT-CTATAACTTCAAGAGGATAAG
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAAC-TTTACTATAACTTCAAGAGGATAAG
* * *
23684582 AATTAACGTTTGAAGGTTCATCTAGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
** * * *
23684610 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAAGATTACTAAAACTTCAAAAGGAGAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23684675 ATT-ATCGTTTGAAGCTTCATCTTGCTC
66 ATTGA-CGTTTGAAGCTTCATCTTGCTC
23684702 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23684767 ATTGACGTTTGAAGATTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23684794 TTACTATAACTTCA-AGGACATAAAGGTTCCTTATCCAACTTTACTATAACTTGAAGAGGATAAG
1 TTACTATAACTTCAGA-GAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
*
23684858 AATTGACGTTGGAAGCTTCATCTTGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23684886 ATACTATAACTTCAGGGAGATAAAGGTTCGTTTTCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23684951 ATTGATGTTTGAAGCTTCATCTTGC-C
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23684977 ATTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTTCTATAGCTTCAAGAGGATAAG
1 -TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
* *
23685042 AATTGACATTTGAAGCTTCATCTGGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* *
23685070 TTA-TATAACTTCAGAGAGATGAGGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23685134 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23685161 TTACTATAACTTCAGAGTGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23685226 ATTGACGTTTAAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23685253 TTACTATAACTTTAGAGAGATAAAGATTCGTTATCCAACTTTACTACAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23685318 ATTCACGTTTAAAGCTTCATCTAGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23685345 TTACTTTAACTTCAGAGAGATGAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23685410 ATTGACGTTTGAAGCTTCATCTAG--C
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23685435 TTACTATAACTTCAGAGAGATAAAAGTTCGTTATCCAACTTTCCTATAAATTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23685500 ATTGAGGTTTGAAACTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23685527 CTACTATAACTTCAGAGAGATAAGGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23685592 ATTGACGTTTGAAGCTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23685619 TTACTATAACTTCAGAGTGAT-AAGATTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23685683 ATTGACGTTTGAAGCTTCAT-TTAG--A
66 ATTGACGTTTGAAGCTTCATCTT-GCTC
* * *
23685708 TTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTTCCTATAAATTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23685773 ATTGAGGTTTGAAACTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23685800 TTACTATAACTTCAGAGAGATAAGGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23685865 ATTGACGTTTGAAGCTTTATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23685892 TTACTATAACTTCAGAGAGATAAAGGTTTGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23685957 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* *
23685984 TTACTATAACTTCAGAGAGATAAAGGTTCGATATCCAACTTTACTATAACTTGAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23686049 ATAGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23686076 TTACTACAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23686141 ATTGACGTTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
*
23686168 TTACTATAACTTCAGAGAGATAAAGGTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23686233 ATTGACGTTGGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23686260 TTACTATAACTTCAGTGTGATAAAGGTTCGTTATCCAACATTT-CTATAACTTTAAGAGGATAAG
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAAC-TTTACTATAACTTCAAGAGGATAAG
* * *
23686324 AATTAACGTTTGAAGGTTCATCTAGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* *
23686352 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTAAAACTTCAAAAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
23686417 ATT-ATCGTTTGAAGCTTCATCTTGCTC
66 ATTGA-CGTTTGAAGCTTCATCTTGCTC
* *
23686444 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAATTTTACTATAACTTCAAAAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23686509 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * * * * *
23686536 TTACTATAGCTTTAGAGCGTTAAAGCTTCATTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23686601 ATTGACGTTTGAAGATTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23686628 TTACTATAACTTCA-AGGACATAAAGGTTCCTTATCCAACTTTACTATAACTTGAAGAGGATAAG
1 TTACTATAACTTCAGA-GAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
*
23686692 AATTGACGTTGGAAGCTTCATCTTGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* * * *
23686720 ATACTATAACTTCAGGGAGATAAAGGTTCGTTTTCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23686785 ATTGATGTTTGAAGCTTCATCTTGC-C
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23686811 ATTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTTCTATAGCTTCAAGAGGATAAG
1 -TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
* *
23686876 AATTGACATTTGAAGCTTCATCTGGCTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* *
23686904 TTA-TATAACTTCAGAGAGATGAGGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23686968 ATTGACGTTTGAAGCTTCATCTGGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23686995 TTACTATAACTTCAAAGTGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGC
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23687060 ATTGACGTTTAAAGCTTCATCTTGTTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23687087 TTACTATAACTTTAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGAAAAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23687152 ATTGACGTTTGAAGCTTCATCTAGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
* * *
23687179 TTACTATAACTTCAGAGAGATGAGGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAACA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* *
23687244 ATTTAGGTTTGAAGCTTTATCTTATCTTGCTC
66 ATTGACGTTTGAAGC--T-TC--ATCTTGCTC
*
23687276 TTACTATAACTTCA-AGGAGATGAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
1 TTACTATAACTTCAGA-GAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAG
* *
23687340 AATTGACGTTTGATGCTTCATC-TGACCC
65 AATTGACGTTTGAAGCTTCATCTTG-CTC
* * * * *
23687368 TTACTATAACTTCAGAGAGATAAAGGTTTGCTATCCAACTTTACTGCT-ACTTCAAGAGTATAGG
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACT-ATAACTTCAAGAGGATAAG
* * *
23687432 AATTGATGTTTGAAGCTTTATCTTGGTC
65 AATTGACGTTTGAAGCTTCATCTTGCTC
* * * * * *
23687460 TTGCTACAACTTCAAAGAGAT-AAGTTTCATTATCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
*
23687524 ATTGACATTTGAAGCTTCATCTTGCTC
66 ATTGACGTTTGAAGCTTCATCTTGCTC
23687551 TTACTATAACTTCAGAGAGATAAAG
1 TTACTATAACTTCAGAGAGATAAAG
23687576 ACTTGTTATT
Statistics
Matches: 17574, Mismatches: 1886, Indels: 1820
0.83 0.09 0.09
Matches are distributed among these distances:
76 4 0.00
77 8 0.00
78 6 0.00
79 8 0.00
80 114 0.01
81 75 0.00
82 50 0.00
83 20 0.00
84 33 0.00
85 78 0.00
86 28 0.00
87 35 0.00
88 74 0.00
89 192 0.01
90 947 0.05
91 1835 0.10
92 12808 0.73
93 830 0.05
94 81 0.00
95 22 0.00
96 37 0.00
97 108 0.01
98 14 0.00
99 48 0.00
100 35 0.00
101 19 0.00
102 20 0.00
103 17 0.00
104 8 0.00
105 6 0.00
106 6 0.00
107 6 0.00
108 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (92 bp):
TTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
ATTGACGTTTGAAGCTTCATCTTGCTC
Found at i:23668728 original size:40 final size:40
Alignment explanation
Indices: 23668679--23668833 Score: 116
Period size: 40 Copynumber: 3.6 Consensus size: 40
23668669 CGTCTGACTC
*
23668679 TTACAATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAG-GATAAAGGTTCGTTATCCAACT
* * *
23668719 TTACTATAACTTCAAGAGGATAAGAATTGACGTTTGAAGCTTCATCTACCT
1 TTACTATAACTTCAAGAGGAT-A-AA--G--G-TT--CG-TT-ATCCAACT
* *
23668770 CTTACTATAACTTC-AGAGAGATAATGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAG-GATAAAGGTTCGTTATCCAACT
23668811 TTACTATAACTTCAAGAGGATAA
1 TTACTATAACTTCAAGAGGATAA
23668834 GAATTGACGT
Statistics
Matches: 91, Mismatches: 9, Indels: 30
0.70 0.07 0.23
Matches are distributed among these distances:
40 33 0.36
41 15 0.16
42 4 0.04
44 1 0.01
45 2 0.02
46 2 0.02
47 2 0.02
48 1 0.01
49 1 0.01
50 3 0.03
51 11 0.12
52 16 0.18
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.32
Consensus pattern (40 bp):
TTACTATAACTTCAAGAGGATAAAGGTTCGTTATCCAACT
Found at i:23669939 original size:40 final size:41
Alignment explanation
Indices: 23669877--23670031 Score: 111
Period size: 40 Copynumber: 3.6 Consensus size: 41
23669867 CATCTTGCTC
*
23669877 TTACTATAACTTC-AGGGAGATAAAGGTTCATTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAAGGTTCATTATCCAACT
* ***
23669917 TTACTATAACTTCAAGAG-GATAAGAATTGATGTTGGAATCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT-A-AA--G--GTT--CA--TT-ATCCAACT
* *
23669968 CTTACTATAACTTCAAG-GAGATAAAGGTTCGTTATCCAACA
1 -TTACTATAACTTCAAGAGAGATAAAGGTTCATTATCCAACT
23670009 TTACTATAACTTCAAGAG-GATAA
1 TTACTATAACTTCAAGAGAGATAA
23670032 GAATTGACAT
Statistics
Matches: 89, Mismatches: 11, Indels: 30
0.68 0.08 0.23
Matches are distributed among these distances:
40 37 0.42
41 9 0.10
42 4 0.04
44 1 0.01
46 6 0.07
48 2 0.02
50 4 0.04
51 7 0.08
52 19 0.21
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.33
Consensus pattern (41 bp):
TTACTATAACTTCAAGAGAGATAAAGGTTCATTATCCAACT
Found at i:23670656 original size:40 final size:40
Alignment explanation
Indices: 23670612--23670766 Score: 116
Period size: 40 Copynumber: 3.6 Consensus size: 40
23670602 CATCTGGCTC
*
23670612 TTACTATAACTTC-AGAGAGATAAAGGTTCATTATCCAACT
1 TTACTATAACTTCAAGAG-GATAAAGGTTCATTATCAAACT
* ***
23670652 TTACTATAACTTCAAGAGGATAAGAATTGAGGTTTGAAGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGGAT---AA---AGG-TT-CA--TT-ATCAAACT
*
23670703 CTTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCAAACT
1 -TTACTATAACTTCAAGAG-GATAAAGGTTCATTATCAAACT
23670744 TTACTATAACTTCAAGAGGATAA
1 TTACTATAACTTCAAGAGGATAA
23670767 GAATTGACGT
Statistics
Matches: 91, Mismatches: 9, Indels: 30
0.70 0.07 0.23
Matches are distributed among these distances:
40 34 0.37
41 13 0.14
42 2 0.02
43 2 0.02
45 2 0.02
46 6 0.07
47 2 0.02
48 1 0.01
49 2 0.02
50 2 0.02
51 9 0.10
52 16 0.18
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.32
Consensus pattern (40 bp):
TTACTATAACTTCAAGAGGATAAAGGTTCATTATCAAACT
Found at i:23674806 original size:40 final size:41
Alignment explanation
Indices: 23674744--23677269 Score: 195
Period size: 40 Copynumber: 55.6 Consensus size: 41
23674734 CATCTTGCCA
23674744 TTACTATAACTTC-AGAGAGATAAGGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** * *
23674784 TTACTATAGCTTCAAGAG-GATAAGAATTGACATTTGATGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--C-GTT-AT-C--CA----ACT
*
23674835 CTTACTATAACTTC-AGAGAGATGAGGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ***
23674876 TTACTATAACTTTAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* *
23674927 CTTACTATAACTTCAA-AGTGATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* *
23674968 TTACTATAACTTC-AGAGTGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23675008 TTACTATAACTTCAAGAG-GATAAGCATTGACGTTTAAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* * *
23675059 CTTACTATAACTT-TAGAGAGATAAAGCTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** *
23675100 TTACTACAACTTCAAGAG-GATAAGAATTCACGTTTAAAGCTTCATCTAGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A---TC--C-AACT
*
23675151 CTTACTTTAACTTC-AGAGAGATGAA-GGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGAT-AAGGGTTCGTTATCCAACT
** * *
23675192 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A--TCCAACT
**
23675239 AGCTTACTATAACTTC-AGAGAGATAAAAGTTCGTTATCCAACT
1 ---TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23675282 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GG-TT----CGTTATCCAACT
* *
23675333 CCTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ***
23675374 TTACTATAACTTAAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* * *
23675425 CTTACTATAACTTC-AGAGTGATAA-GATTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
** * **
23675465 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATTTAGA
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A--TCCA---ACT
* *
23675515 TTACTATAACTT-GAGAGAGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * * ***
23675555 TTCCAATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GGTTCG----TT-ATCCAACT
*
23675606 CTTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23675647 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* *
23675698 CTTACTATAACTTC-AGAGAGATAAAGGTTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23675739 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* *
23675790 CTTACTATAACTTC-AGAGAGATAAAGGTTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23675831 TTACGATAACTGCAAGAG-GATAAGAATTGACGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--GTTCG----TT-ATCCAACT
* * * *
23675882 CTTACAACAACTTC-AGAGAGATAAGCGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23675923 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* * *
23675974 CTTACTATAACTT-TAGAGAGATAAAGTTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ***
23676015 TTACTATAACATCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* * * * * * *
23676066 CTTACTATAACTTC-AGGGACATAAAGGTTCCTTTTTCGACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** * *
23676107 TTACTATAACTTGAAGAG-GATAAGAATTGACGTTGGAAGCTTCATCTT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CGTT---A--TCCAAC-T
* *
23676155 GCTCATACTATAACTTC-AGAGAGATAAAGGTTCGTTTTCCAACT
1 --T--TACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * *** *
23676199 TTACTATAACTTTAAGAG-GATAAGAATTGATGTTTGAAGCTTCATCTTGCCA
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATC-CAACT
23676251 TTACTATAACTTC-AGAGAGATAAGGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ** *
23676291 TTACTATAGCTTTAAGTG-GATAAGAATTGACATTTGATGCTTCATCTGACT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--C-GTT-AT-C--CA----ACT
*
23676342 CTTACTATAACTTC-AGAGAGATGAGGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ***
23676383 TTACTATAACTTTAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* *
23676434 CTTACTATAACTTCAA-AGTGATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* *
23676475 TTACTATAACTTC-AGAGTGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23676515 TTACTATAACTTCAAGAG-GATAAGCATTGACGTTTAAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* * * *
23676566 CTTACTATAACTT-TAGAAAGATAAAGATTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** *
23676607 TTACTACAACTTCAAGAG-GATAAGAATTCACGTTTAAAGCTTCATCTAGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A---TC--C-AACT
* *
23676658 CTTACTTTAACTT-TAGAGAGATGAA-GGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGAT-AAGGGTTCGTTATCCAACT
** * *
23676699 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A--TCCAACT
*
23676746 AGCTTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 ---TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23676789 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GGTTCG----TT-ATCCAACT
* *
23676840 CCTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23676881 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAACTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* * *
23676932 CTTACTATAACTTC-AGAGTGATAA-GATTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
** * **
23676972 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTCGAAGCTTCATTTAGA
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CGTT---A--TCCA---ACT
*
23677022 TTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23677062 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GGTTCG----TT-ATCCAACT
*
23677113 CTTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23677154 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* *
23677205 CTTACTATAACTTC-AGAGAGATAAAGGTTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
23677246 TTACTATAACTTCAAGAG-GATAAG
1 TTACTATAACTTCAAGAGAGATAAG
23677270 AATTGACGTT
Statistics
Matches: 1787, Mismatches: 334, Indels: 730
0.63 0.12 0.26
Matches are distributed among these distances:
39 42 0.02
40 532 0.30
41 189 0.11
42 42 0.02
43 44 0.02
44 25 0.01
45 42 0.02
46 56 0.03
47 66 0.04
48 29 0.02
49 39 0.02
50 117 0.07
51 192 0.11
52 368 0.21
53 4 0.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (41 bp):
TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
Found at i:23675052 original size:224 final size:223
Alignment explanation
Indices: 23674744--23675214 Score: 735
Period size: 224 Copynumber: 2.1 Consensus size: 223
23674734 CATCTTGCCA
* *
23674744 TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTACTATAGCTTCAAGAGGATAAGA
1 TTACTATAACTTCAGAG-GATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * * * *
23674809 ATTGACATTTGATGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATGAGGGTTCGTTATCCAA
65 ATTGACATTTAAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGCTTCGTTATCCAA
* * * * *
23674874 CTTTACTATAACTTTAAGAGGATAAGAATTGACGTTTGAAGCTTCATCTGGCTCTTACTATAACT
130 CTTTACTACAACTTCAAGAGGATAAGAATTCACGTTTAAAGCTTCATCTAGCTCTTACTATAACT
*
23674939 TCAAAGTGATAAAGGTTCGTTATCCAACT
195 TCAAAGAGATAAAGGTTCGTTATCCAACT
*
23674968 TTACTATAACTTCAGAGTGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGC
1 TTACTATAACTTCAGAG-GATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23675033 ATTGACGTTTAAAGCTTCATCTTGCTCTTACTATAACTTTAGAGAGATAAAGCTTCGTTATCCAA
65 ATTGACATTTAAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGCTTCGTTATCCAA
*
23675098 CTTTACTACAACTTCAAGAGGATAAGAATTCACGTTTAAAGCTTCATCTAGCTCTTACTTTAACT
130 CTTTACTACAACTTCAAGAGGATAAGAATTCACGTTTAAAGCTTCATCTAGCTCTTACTATAACT
* *
23675163 TCAGAGAGATGAAGGTTCGTTATCCAACT
195 TCAAAGAGATAAAGGTTCGTTATCCAACT
23675192 TTACTATAACTTCAAGAGGATAA
1 TTACTATAACTTC-AGAGGATAA
23675215 GAATTGACGT
Statistics
Matches: 225, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
224 221 0.98
225 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (223 bp):
TTACTATAACTTCAGAGGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGAA
TTGACATTTAAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGCTTCGTTATCCAAC
TTTACTACAACTTCAAGAGGATAAGAATTCACGTTTAAAGCTTCATCTAGCTCTTACTATAACTT
CAAAGAGATAAAGGTTCGTTATCCAACT
Found at i:23678369 original size:40 final size:41
Alignment explanation
Indices: 23678307--23684121 Score: 312
Period size: 40 Copynumber: 127.6 Consensus size: 41
23678297 CATCTTGCCA
23678307 TTACTATAACTTC-AGAGAGATAAGGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** * *
23678347 TTACTATAGCTTCAAGAG-GATAAGAATTGACATTTGATGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--C-GTT-AT-C--CA----ACT
*
23678398 CTTACTATAACTTC-AGAGAGATGAGGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ***
23678439 TTACTATAACTTTAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* *
23678490 CTTACTATAACTTCAA-AGTGATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* *
23678531 TTACTATAACTTC-AGAGTGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23678571 TTACTATAACTTCAAGAG-GATAAGCATTGACGTTTAAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* * * *
23678622 CTTACTATAACTT-TAGAGAGATAAAGATTCGTTATCCAATT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** *
23678663 TTACTACAACTTCAAGAG-GATAAGAATTCACGTTTAAAGCTTCATCTAGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A---TC--C-AACT
*
23678714 CTTACTTTAACTTC-AGAGAGATGAA-GGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGAT-AAGGGTTCGTTATCCAACT
** * *
23678755 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A--TCCAACT
**
23678802 AGCTTACTATAACTTC-AGAGAGATAAAAGTTCGTTATCCAACT
1 ---TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23678845 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GG-TT----CGTTATCCAACT
* *
23678896 CCTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ***
23678937 TTACTATAACTTAAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* * *
23678988 CTTACTATAACTTC-AGAGTGATAA-GATTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
** * **
23679028 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATTTAGA
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A--TCCA---ACT
* *
23679078 TTACTATAACTT-GAGAGAGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23679118 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GGTTCG----TT-ATCCAACT
*
23679169 CTTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23679210 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* *
23679261 CTTACTATAACTTC-AGAGAGATAAAGGTTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23679302 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* *
23679353 CTTACTATAACTTC-AGAGAGATAAAGGTTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23679394 TTACGATAACTGCAAGAG-GATAAGAATTGACGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--GTTCG----TT-ATCCAACT
* * * *
23679445 CTTACAACAACTTC-AGAGAGATAAGCGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23679486 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* * *
23679537 CTTACTATAACTT-TAGAGAGATAAAGTTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ***
23679578 TTACTATAACATCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* * * * * * **
23679629 CTTACTATAACTTC-AGGGACATAAAGGTTCCTTTTTCGTCT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** * *
23679670 TTACTATAACTTGAAGAG-GATAAGAATTGACGTTGGAAGCTTCATCTT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CGTT---A--TCCAAC-T
* *
23679718 GCTCATACTATAACTTC-AGAGAGATAAAGGTTCGTTTTCCAACT
1 --T--TACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** * * *
23679762 TTACTATAACTTTAAGAG-GATAAGAATTGATGTTTGAAGCTTCATCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A--TCCAACT
23679809 TGCCATTACTATAACTTC-AGAGAGATAAGGGTTCGTTATCCAACT
1 T----T-ACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ** * *
23679854 TTACTATAGCTTCAAGTG-GATAAGAATTGACATTTGATGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--C-GTT-AT-C--CA----ACT
*
23679905 CTTACTATAACTTC-AGAGAGATGAGGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ***
23679946 TTACTATAACTTTAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* *
23679997 CTTACTATAACTTCAA-AGTGATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* *
23680038 TTACTATAACTTC-AGAGTGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23680078 TTACTATAACTTCAAGAG-GATAAGCATTGACGTTTAAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* * *
23680129 CTTACTATAACTT-TAGAGAGATAAAGATTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** *
23680170 TTACTACAACTTCAAGAG-GATAAGAATTCACGTTTAAAGCTTCATCTAGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A---TC--C-AACT
*
23680221 CTTACTTTAACTTC-AGAGAGATGAA-GGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGAT-AAGGGTTCGTTATCCAACT
** * *
23680262 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A--TCCAACT
*
23680309 AGCTTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 ---TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23680352 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GGTTCG----TT-ATCCAACT
* *
23680403 CCTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23680444 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* * *
23680495 CTTACTATAACTTC-AGAGTGATAA-GATTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
** * **
23680535 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTCGAAGCTTCATTTAGA
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CGTT---A--TCCA---ACT
*
23680585 TTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23680625 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GGTTCG----TT-ATCCAACT
*
23680676 CTTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23680717 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* *
23680768 CTTACTATAACTTC-AGAGAGATAAAGGTTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23680809 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* *
23680860 CTTACTATAACTTC-AGAGAGATAAAGGTTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ** * *
23680901 TTACGATAACTGCAAGAG-GATAAGAATTGACGTTTGAAACTTCATCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT---A-TCCAACT
* * *
23680948 TGATCTTATAATAACTTC-AGAGAGATAAGCGTTCATTATCCAACT
1 TTA-C---T-ATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23680993 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* * *
23681044 CTTACTATAACTT-TAGAGAGATAAAGTTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ***
23681085 TTACTATAACATCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* * * * * * *
23681136 CTTACTATAACTTC-AGGGACATAAAGGTTCCTTTTTCGACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** * *
23681177 TTACTATAACTTGAAGAG-GATAAGAATTGACGTTGGAAGCTTCATCTT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CGTT---A--TCCAAC-T
* *
23681225 GCTCATACTATAACTTC-AGAGAGATAAAGGTTCGTTTTCCAACT
1 --T--TACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** * * *
23681269 TTACTATAACTTTAAGAG-GATAAGAATTAATGTTTGAAGCTTCATCTT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A--TCCAAC-T
23681317 GCCATTACTATAACTTC-AGAGAGATAAGGGTTCGTTATCCAACT
1 ----TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** * *
23681361 TTACTATAGCTTCAAGAG-GATAAGAATTGACATTTGATGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--C-GTT-AT-C--CA----ACT
* *
23681412 CTTACTATAAGTTC-AGAGAGATGAGGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** **
23681453 TTACTATAACTTTAAGAG-GATAAGAATTGACGTTTGAAGCTTCGTCTGGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A---TC--C-AACT
* *
23681504 CTTACTATAACTTCAA-AGTGATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* *
23681545 TTACTATAACTTC-AGAGTGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* **
23681585 TTACTATAACTTCAAGAG-GATAAGCATTGACGTTTAAAGCTTCATCCTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* * *
23681636 CTTACTATAACTT-TAGAGAGATAAAGATTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** *
23681677 TTACTACAACTTCAAGAG-GATAAGAATTCACGTTTAAAGCTTCATCTAGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A---TC--C-AACT
*
23681728 CTTACTTTAACTTC-AGAGAGATGAA-GGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGAT-AAGGGTTCGTTATCCAACT
** * *
23681769 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A--TCCAACT
*
23681816 AGCTTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 ---TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23681859 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GGTTCG----TT-ATCCAACT
* *
23681910 CCTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23681951 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGGAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* * *
23682002 CTTACTATAACTTC-AGAGTGATAA-GATTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23682042 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* * *
23682093 CTTACTATAACTTC-AGAGTGATAA-GATTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
** * **
23682133 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTCGAAGCTTCATTTAGA
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CGTT---A--TCCA---ACT
*
23682183 TTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23682223 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GGTTCG----TT-ATCCAACT
*
23682274 CTTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23682315 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* *
23682366 CTTACTATAACTTC-AGAGAGATAAAGGTTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23682407 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* *
23682458 CTTACTATAACTTC-AGAGAGATAAAGGTTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23682499 TTACGATAACTGCAAGAG-GATAAGAATTGACGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--GTTCG----TT-ATCCAACT
* * *
23682550 CTTACAATAACTTC-AGAGAGATAAGCGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23682591 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* * *
23682642 CTTACTATAACTT-TAGAGAGATAAAGTTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ***
23682683 TTACTATAACATCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* * * * * * *
23682734 CTTACTATAACTTC-AGGGACATAAAGGTTCCTTTTTCGACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** * *
23682775 TTACTATAACTTGAAGAG-GATAAGAATTGACGTTGGAAGCTTCATCTT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CGTT---A--TCCAAC-T
* *
23682823 GCTCATACTATAACTTC-AGAGAGATAAAGGTTCGTTTTCCAACT
1 --T--TACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * *** *
23682867 TTACTATAACTTTAAGAG-GATAAGAATTGATGTTTGAAGCTTCATCTTGCCA
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATC-CAACT
23682919 TTACTATAACTTC-AGAGAGATAAGGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** * *
23682959 TTACTATAGCTTCAAGAG-GATAAGAATTGACATTTGATGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--C-GTT-AT-C--CA----ACT
*
23683010 CTTACTATAACTTC-AGAGAGATGAGGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * ***
23683051 TTACTATAACTTTAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCTGGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* *
23683102 CTTACTATAACTTCAA-AGTGATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* *
23683143 TTACTATAACTTC-AGAGTGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23683183 TTACTATAACTTCAAGAG-GATAAGCATTGACGTTTAAAGCTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT--CG-TT-ATCCAACT
* * *
23683234 CTTACTATAACTT-TAGAGAGATAAAGATTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ** *
23683275 TTACTACAACTTCAAGAG-GATAAGAATTCACGTTTAAAGCTTCATCTAGCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A---TC--C-AACT
*
23683326 CTTACTTTAACTTC-AGAGAGATGAA-GGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGAT-AAGGGTTCGTTATCCAACT
** * *
23683367 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATCT
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A--TCCAACT
*
23683414 AGCTTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 ---TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23683457 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GGTTCG----TT-ATCCAACT
* *
23683508 CCTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23683549 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* * *
23683600 CTTACTATAACTTC-AGAGTGATAA-GATTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
** * **
23683640 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTCATTTAGA
1 TTACTATAACTTCAAGAGAGATAAGGGTT--CG-TT--A--TCCA---ACT
*
23683690 TTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23683730 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GGTTCG----TT-ATCCAACT
*
23683781 CTTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23683822 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TT----CGTTATCCAACT
* *
23683873 CTTACTATAACTTC-AGAGAGATAAAGGTTTGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* ***
23683914 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGGAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGATAAG----G--G-TTCG---TT-ATCCAACT
*
23683965 CTTACTATAACTTC-AGAGAGATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
* * * ***
23684006 TTCCTATAAATTCAAGAG-GATAAGAATTGAGGTTTGAAACTTCATCTTGCT
1 TTACTATAACTTCAAGAGAGAT---AA--G-GGTTCG----TT-ATCCAACT
*
23684057 CTTACTATAACTTC-AGAGAGATAAGGGTTCATTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
23684098 TTACTATAACTTCAAGAG-GATAAG
1 TTACTATAACTTCAAGAGAGATAAG
23684122 AATTGACGTT
Statistics
Matches: 4148, Mismatches: 771, Indels: 1712
0.63 0.12 0.26
Matches are distributed among these distances:
39 102 0.02
40 1203 0.29
41 425 0.10
42 100 0.02
43 97 0.02
44 59 0.01
45 109 0.03
46 131 0.03
47 164 0.04
48 65 0.02
49 88 0.02
50 251 0.06
51 448 0.11
52 898 0.22
53 8 0.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (41 bp):
TTACTATAACTTCAAGAGAGATAAGGGTTCGTTATCCAACT
Found at i:23680122 original size:224 final size:223
Alignment explanation
Indices: 23679814--23680284 Score: 726
Period size: 224 Copynumber: 2.1 Consensus size: 223
23679804 CATCTTGCCA
* * *
23679814 TTACTATAACTTCAGAGAGATAAGGGTTCGTTATCCAACTTTACTATAGCTTCAAGTGGATAAGA
1 TTACTATAACTTCAGAG-GATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * * * *
23679879 ATTGACATTTGATGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATGAGGGTTCGTTATCCAA
65 ATTGACATTTAAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGATTCGTTATCCAA
* * * * *
23679944 CTTTACTATAACTTTAAGAGGATAAGAATTGACGTTTGAAGCTTCATCTGGCTCTTACTATAACT
130 CTTTACTACAACTTCAAGAGGATAAGAATTCACGTTTAAAGCTTCATCTAGCTCTTACTATAACT
*
23680009 TCAAAGTGATAAAGGTTCGTTATCCAACT
195 TCAAAGAGATAAAGGTTCGTTATCCAACT
*
23680038 TTACTATAACTTCAGAGTGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGC
1 TTACTATAACTTCAGAG-GATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23680103 ATTGACGTTTAAAGCTTCATCTTGCTCTTACTATAACTTTAGAGAGATAAAGATTCGTTATCCAA
65 ATTGACATTTAAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGATTCGTTATCCAA
*
23680168 CTTTACTACAACTTCAAGAGGATAAGAATTCACGTTTAAAGCTTCATCTAGCTCTTACTTTAACT
130 CTTTACTACAACTTCAAGAGGATAAGAATTCACGTTTAAAGCTTCATCTAGCTCTTACTATAACT
* *
23680233 TCAGAGAGATGAAGGTTCGTTATCCAACT
195 TCAAAGAGATAAAGGTTCGTTATCCAACT
23680262 TTACTATAACTTCAAGAGGATAA
1 TTACTATAACTTC-AGAGGATAA
23680285 GAATTGACGT
Statistics
Matches: 224, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
224 220 0.98
225 4 0.02
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Consensus pattern (223 bp):
TTACTATAACTTCAGAGGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGAA
TTGACATTTAAAGCTTCATCTGGCTCTTACTATAACTTCAGAGAGATAAAGATTCGTTATCCAAC
TTTACTACAACTTCAAGAGGATAAGAATTCACGTTTAAAGCTTCATCTAGCTCTTACTATAACTT
CAAAGAGATAAAGGTTCGTTATCCAACT
Found at i:23682064 original size:39 final size:39
Alignment explanation
Indices: 23682003--23682157 Score: 134
Period size: 39 Copynumber: 3.6 Consensus size: 39
23681993 TATCTTGCTC
23682003 TTACTATAACTTCAGAGTGATAAGATTTGTTATCCAACT
1 TTACTATAACTTCAGAGTGATAAGATTTGTTATCCAACT
***
23682042 TTACTATAACTTCAAGAG-GATAAGAATTGACGTTTGAAGCTTTATCTTGCT
1 TTACTATAACTTC-AGAGTGAT---AA--GA--TTT---G--TTATCCAACT
23682093 CTTACTATAACTTCAGAGTGATAAGATTTGTTATCCAACT
1 -TTACTATAACTTCAGAGTGATAAGATTTGTTATCCAACT
23682133 TTACTATAACTTCAAGAG-GATAAGA
1 TTACTATAACTTC-AGAGTGATAAGA
23682158 ATTGACGTTC
Statistics
Matches: 94, Mismatches: 6, Indels: 32
0.71 0.05 0.24
Matches are distributed among these distances:
39 36 0.38
40 15 0.16
42 3 0.03
44 2 0.02
45 3 0.03
46 3 0.03
47 2 0.02
49 3 0.03
51 11 0.12
52 16 0.17
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (39 bp):
TTACTATAACTTCAGAGTGATAAGATTTGTTATCCAACT
Found at i:23683186 original size:132 final size:131
Alignment explanation
Indices: 23683011--23683571 Score: 454
Period size: 132 Copynumber: 4.2 Consensus size: 131
23683001 CATCTGGCTC
* * *
23683011 TTACTATAACTTCAGAGAGATGAGGGTTCGTTATCCAACTTTACTATAACTTTAAGAGGATAAGA
1 TTACTATAACTTCAGAG-GATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23683076 ATTGACGTTTGAAGCTTCATCTGGCTCTTACTATAACTTCAAAGTGATAAAGGTTCGTTATCCAA
65 ATTGACGTTTAAAGCTTCATCTGGCTCTTACTATAACTTCAAAGAGATAAAGATTCGTTATCCAA
23683141 CT
130 CT
*
23683143 TTACTATAACTTCAGAGTGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGC
1 TTACTATAACTTCAGAG-GATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGA
* * *
23683208 ATTGACGTTTAAAGCTTCATCTTGCTCTTACTATAACTTTAGAGAGATAAAGATTCGTTATCCAA
65 ATTGACGTTTAAAGCTTCATCTGGCTCTTACTATAACTTCAAAGAGATAAAGATTCGTTATCCAA
23683273 CT
130 CT
* * * *
23683275 TTACTACAACTTCAAGAGGAT-AAGAATTCACGTTTAAAGCTTCATCTAGCTCTTACTTTAACTT
1 TTACTATAACTTC-AGAGGATAAAG-GTT--CG-TT--A---TC--C-AACT-TTACTATAACTT
* ***
23683339 C-AGAGAGAT--GAA--G--G-TT--CG-TT-ATCCAACT-TTACTATAACTTC-AAGAGGAT-A
52 CAAGAG-GATAAGAATTGACGTTTAAAGCTTCATCTGGCTCTTACTATAACTTCAAAGA-GATAA
* *
23683389 AGAATTGACGTTTGAAGCTTCATCT
115 AG-ATT--CG-TT--A--TCCAACT
* *
23683414 AGCTTACTATAACTTCAGAGAGATAAAGGTTCGTTATCCAACTTTCCTATAAATTCAAGAGGATA
1 ---TTACTATAACTTCAGAG-GATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATA
* * * * * * *
23683479 AGAATTGAGGTTTGAAA-CTTCATCTTGCTCCTACTATAACTTCAGAGAGATAAGGGTTCATTAT
62 AGAATTGACGTTT-AAAGCTTCATCTGGCTCTTACTATAACTTCAAAGAGATAAAGATTCGTTAT
23683543 CCAACT
126 CCAACT
23683549 TTACTATAACTTCAAGAGGATAA
1 TTACTATAACTTC-AGAGGATAA
23683572 GAATTGACGT
Statistics
Matches: 342, Mismatches: 41, Indels: 92
0.72 0.09 0.19
Matches are distributed among these distances:
130 13 0.04
131 16 0.05
132 178 0.52
133 13 0.04
134 9 0.03
135 10 0.03
136 1 0.00
137 8 0.02
138 1 0.00
139 9 0.03
140 8 0.02
141 9 0.03
142 37 0.11
143 15 0.04
144 15 0.04
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (131 bp):
TTACTATAACTTCAGAGGATAAAGGTTCGTTATCCAACTTTACTATAACTTCAAGAGGATAAGAA
TTGACGTTTAAAGCTTCATCTGGCTCTTACTATAACTTCAAAGAGATAAAGATTCGTTATCCAAC
T
Found at i:23686374 original size:52 final size:50
Alignment explanation
Indices: 23686303--23687199 Score: 172
Period size: 40 Copynumber: 19.4 Consensus size: 50
23686293 TCCAACATTT
*
23686303 CTATAACTTTA-AGAGGATAAGAATTAACGTTTGAAGGTTCATCTAGCTCTTA
1 CTATAACTTCAGAGA-GATAAGAATT-ACGTTTGAA-GTTCATCTAGCTCTTA
* *
23686355 CTATAACTTCAGAGAGATAA-AGGTT-CG-TT--A--TC--C-AACT-TTA
1 CTATAACTTCAGAGAGATAAGA-ATTACGTTTGAAGTTCATCTAGCTCTTA
* * *
23686395 CTAAAACTTCA-AAAGGATAAGAATTATCGTTTGAAGCTTCATCTTGCTCTTA
1 CTATAACTTCAGAGA-GATAAGAATTA-CGTTTGAAG-TTCATCTAGCTCTTA
* * *
23686447 CTATAACTTCAGAGAGATAA-AGGTT-CG-TT--A--TC--C-A-ATTTTA
1 CTATAACTTCAGAGAGATAAGA-ATTACGTTTGAAGTTCATCTAGCTCTTA
* *
23686487 CTATAACTTCA-AAAGGATAAGAATTGACGTTTGAAGCTTCATCTGGCTCTTA
1 CTATAACTTCAGAGA-GATAAGAATT-ACGTTTGAAG-TTCATCTAGCTCTTA
* * * * * * * *
23686539 CTATAGCTTTAGAGCG-T--TAA--A-GCTT-CA-TT-ATCCAACT-TTA
1 CTATAACTTCAGAGAGATAAGAATTACGTTTGAAGTTCATCTAGCTCTTA
*
23686579 CTATAACTTCA-AGAGGATAAGAATTGACGTTTGAAGATTCATCTTGCTCTTA
1 CTATAACTTCAGAGA-GATAAGAATT-ACGTTTGAAG-TTCATCTAGCTCTTA
* * * ** * *
23686631 CTATAACTTCA-AG-GA-CATAA--A-GGTT--CCTT-ATCCAACT-TTA
1 CTATAACTTCAGAGAGATAAGAATTACGTTTGAAGTTCATCTAGCTCTTA
* * * *
23686671 CTATAACTTGA-AGAGGATAAGAATTGACGTTGGAAGCTTCATCTTGCTCATA
1 CTATAACTTCAGAGA-GATAAGAATT-ACGTTTGAAG-TTCATCTAGCTCTTA
* * *
23686723 CTATAACTTCAGGGAGATAA-AGGTT-CG-TT----TTC--C-AACT-TTA
1 CTATAACTTCAGAGAGATAAGA-ATTACGTTTGAAGTTCATCTAGCTCTTA
* * *
23686763 CTATAACTTTA-AGAGGATAAGAATTGATGTTTGAAGCTTCATCTTGC-CATTA
1 CTATAACTTCAGAGA-GATAAGAATT-ACGTTTGAAG-TTCATCTAGCTC-TTA
** * *
23686815 CTATAACTTCAGAGAGATAAGGGTT-CG-TT--A--TC--C-AACT-TTT
1 CTATAACTTCAGAGAGATAAGAATTACGTTTGAAGTTCATCTAGCTCTTA
* * *
23686855 CTATAGCTTCAAGAG-GATAAGAATTGACATTTGAAGCTTCATCTGGCTCTTA
1 CTATAACTTC-AGAGAGATAAGAATT-ACGTTTGAAG-TTCATCTAGCTCTTA
* ** *
23686907 -TATAACTTCAGAGAGATGAGGGTT-CG-TT--A--TC--C-AACT-TTA
1 CTATAACTTCAGAGAGATAAGAATTACGTTTGAAGTTCATCTAGCTCTTA
*
23686946 CTATAACTTCA-AGAGGATAAGAATTGACGTTTGAAGCTTCATCTGGCTCTTA
1 CTATAACTTCAGAGA-GATAAGAATT-ACGTTTGAAG-TTCATCTAGCTCTTA
* * * *
23686998 CTATAACTTCAAAGTGATAA-AGGTT-CG-TT--A--TC--C-AACT-TTA
1 CTATAACTTCAGAGAGATAAGA-ATTACGTTTGAAGTTCATCTAGCTCTTA
* * * *
23687038 CTATAACTTCA-AGAGGATAAGCATTGACGTTTAAAGCTTCATCTTGTTCTTA
1 CTATAACTTCAGAGA-GATAAGAATT-ACGTTTGAAG-TTCATCTAGCTCTTA
* * *
23687090 CTATAACTTTAGAGAGATAA-AGGTT-CG-TT--A--TC--C-AACT-TTA
1 CTATAACTTCAGAGAGATAAGA-ATTACGTTTGAAGTTCATCTAGCTCTTA
*
23687130 CTATAACTTCA-AGAGAAAAAGAATTGACGTTTGAAGCTTCATCTAGCTCTTA
1 CTATAACTTCAGAGAG-ATAAGAATT-ACGTTTGAAG-TTCATCTAGCTCTTA
23687182 CTATAACTTCAGAGAGAT
1 CTATAACTTCAGAGAGAT
23687200 GAGGGTTCGT
Statistics
Matches: 590, Mismatches: 117, Indels: 276
0.60 0.12 0.28
Matches are distributed among these distances:
39 20 0.03
40 166 0.28
41 29 0.05
42 24 0.04
43 21 0.04
44 14 0.02
45 12 0.02
46 5 0.01
47 10 0.02
48 18 0.03
49 17 0.03
50 28 0.05
51 41 0.07
52 165 0.28
53 20 0.03
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (50 bp):
CTATAACTTCAGAGAGATAAGAATTACGTTTGAAGTTCATCTAGCTCTTA
Found at i:23687057 original size:40 final size:41
Alignment explanation
Indices: 23686995--23687241 Score: 128
Period size: 40 Copynumber: 5.6 Consensus size: 41
23686985 CATCTGGCTC
*
23686995 TTACTATAACTTCAA-AGTGATAAAGGTTCGTTATCCAACT
1 TTACTATAACTTCAAGAGAGATAAAGGTTCGTTATCCAACT
* * *
23687035 TTACTATAACTTCAAGAG-GAT-AAGCATTGACGTTTAAAGCTTCATCTTGTT
1 TTACTATAACTTCAAGAGAGATAAAG-GTT--CG-TT--A--TCCAAC----T
*
23687086 CTTACTATAACTT-TAGAGAGATAAAGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAAGGTTCGTTATCCAACT
* * * * *
23687127 TTACTATAACTTCAAGAGAAAAAGAATTGACGTTTGAAGCTTCATCTAGCT
1 TTACTATAACTTCAAGAGAGATA-AA--G--G-TT--CG-TT-ATCCAACT
* *
23687178 CTTACTATAACTTC-AGAGAGATGAGGGTTCGTTATCCAACT
1 -TTACTATAACTTCAAGAGAGATAAAGGTTCGTTATCCAACT
23687219 TTACTATAACTTCAAGAG-GATAA
1 TTACTATAACTTCAAGAGAGATAA
23687242 CAATTTAGGT
Statistics
Matches: 157, Mismatches: 21, Indels: 58
0.67 0.09 0.25
Matches are distributed among these distances:
39 3 0.02
40 49 0.31
41 20 0.13
42 6 0.04
43 3 0.02
44 1 0.01
45 7 0.04
46 2 0.01
47 7 0.04
48 1 0.01
49 3 0.02
50 5 0.03
51 17 0.11
52 30 0.19
53 3 0.02
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (41 bp):
TTACTATAACTTCAAGAGAGATAAAGGTTCGTTATCCAACT
Found at i:23687918 original size:102 final size:100
Alignment explanation
Indices: 23687721--23687918 Score: 270
Period size: 102 Copynumber: 2.0 Consensus size: 100
23687711 GTATTGAATC
* *
23687721 TGCCGTTACGGTCTTAGATCTTTCCTATCGTGTCTTCATGGTACTAGATCCGCCGTTACGGCTTC
1 TGCCGTTACGGTCTTAGATCTTTCCTATCGTATCTTCATGGTACTAGATCCGCCGTTACGGCTTA
23687786 GATCCTTCCCTTATGTATCTTTGTGGTACTGAACT
66 GATCCTTCCCTTATGTATCTTTGTGGTACTGAACT
* * ** * * * *
23687821 TGCCGTTGCGGTCTTAGATCTTTCCTTTCTGTATCTTTGTGGTACTGGATCTGCCGTTGCAGTCT
1 TGCCGTTACGGTCTTAGATCTTTCCTATC-GTATCTTCATGGTACTAGATCCGCCGTTAC-GGCT
* *
23687886 TAGATCTTTCCCTTCTGTATCTTTGTGGTACTG
64 TAGATCCTTCCCTTATGTATCTTTGTGGTACTG
23687919 GATCCAACAT
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
100 27 0.32
101 24 0.29
102 33 0.39
ACGTcount: A:0.13, C:0.24, G:0.21, T:0.42
Consensus pattern (100 bp):
TGCCGTTACGGTCTTAGATCTTTCCTATCGTATCTTCATGGTACTAGATCCGCCGTTACGGCTTA
GATCCTTCCCTTATGTATCTTTGTGGTACTGAACT
Found at i:23687919 original size:51 final size:51
Alignment explanation
Indices: 23687718--23687946 Score: 234
Period size: 51 Copynumber: 4.5 Consensus size: 51
23687708 GCGGTATTGA
* * * ** *
23687718 ATCTGCCGTTACGGTCTTAGATCTTT-CCTATC-GTGTCTTCATGGTACTAG
1 ATCTGCCGTTGCAGTCTTAGATCTTTCCCT-TCTGTATCTTTGTGGTACTGG
* * * * * *
23687768 ATCCGCCGTTAC-GGCTTCGATCCTTCCCTTATGTATCTTTGTGGTACT-G
1 ATCTGCCGTTGCAGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGG
* * *
23687817 AACTTGCCGTTGCGGTCTTAGATCTTTCCTTTCTGTATCTTTGTGGTACTGG
1 ATC-TGCCGTTGCAGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGG
23687869 ATCTGCCGTTGCAGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGG
1 ATCTGCCGTTGCAGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGG
*** *
23687920 ATCCAACATTGCAGT-TTAGATCTTTCC
1 ATCTGCCGTTGCAGTCTTAGATCTTTCC
23687947 TTGTCAAACA
Statistics
Matches: 151, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
49 14 0.09
50 46 0.30
51 88 0.58
52 3 0.02
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.41
Consensus pattern (51 bp):
ATCTGCCGTTGCAGTCTTAGATCTTTCCCTTCTGTATCTTTGTGGTACTGG
Found at i:23690943 original size:17 final size:19
Alignment explanation
Indices: 23690921--23690956 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
23690911 TTATTTAATG
23690921 CATGAAAT-AC-AAATGCA
1 CATGAAATGACAAAATGCA
23690938 CATGAAATGACAAAATGCA
1 CATGAAATGACAAAATGCA
23690957 TGCAACAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 2 0.12
19 7 0.41
ACGTcount: A:0.53, C:0.17, G:0.14, T:0.17
Consensus pattern (19 bp):
CATGAAATGACAAAATGCA
Found at i:23694796 original size:59 final size:60
Alignment explanation
Indices: 23694689--23694949 Score: 268
Period size: 58 Copynumber: 4.3 Consensus size: 60
23694679 TTGGATACCC
* * * *
23694689 GGGGGCAAAATGGTAA-TTTTGGTTGAAAT--TGGGTCAAAAATGGAATTTTGGAAAGTTT
1 GGGGGTAAAATGGTAATTTTTGG-TAAAATCGAGGGTCAAAAATGGAATTTTAGAAAGTTT
* *
23694747 GGGGGTAAAATGGTAATTTTTGGTAAAATCGA-GATCAAAAATGGGATTTTAGAAAGTTT
1 GGGGGTAAAATGGTAATTTTTGGTAAAATCGAGGGTCAAAAATGGAATTTTAGAAAGTTT
* * * *
23694806 AGGGGTAAAATGGTAAAATGGTATTTTTTGGTAAAAT-TAGGGT-TAAAATGGGATTTTAGAAAG
1 --GGG------GGTAAAATGGTAATTTTTGGTAAAATCGAGGGTCAAAAATGGAATTTTAGAAAG
23694869 TTT
58 TTT
* * *
23694872 AGGGGTAAAATGGTATTTTTTGGTAAAATC-AGGGTTAAAAATGGAATTTTAGAAAGTTT
1 GGGGGTAAAATGGTAATTTTTGGTAAAATCGAGGGTCAAAAATGGAATTTTAGAAAGTTT
23694931 GGGGG-AAAATGGTAATTTT
1 GGGGGTAAAATGGTAATTTT
23694950 AGAAAATTTT
Statistics
Matches: 174, Mismatches: 15, Indels: 28
0.80 0.07 0.13
Matches are distributed among these distances:
58 64 0.37
59 55 0.32
61 3 0.02
64 2 0.01
66 23 0.13
67 27 0.16
ACGTcount: A:0.36, C:0.02, G:0.28, T:0.34
Consensus pattern (60 bp):
GGGGGTAAAATGGTAATTTTTGGTAAAATCGAGGGTCAAAAATGGAATTTTAGAAAGTTT
Found at i:23694855 original size:30 final size:30
Alignment explanation
Indices: 23694819--23694921 Score: 113
Period size: 28 Copynumber: 3.5 Consensus size: 30
23694809 GGTAAAATGG
23694819 TAAAATGGTATTTTTTGGTAAAATTAGGGT
1 TAAAATGGTATTTTTTGGTAAAATTAGGGT
* * * *
23694849 TAAAATGGGA--TTTTAG-AAAGTTTAGGGG
1 TAAAATGGTATTTTTTGGTAAA-ATTAGGGT
*
23694877 TAAAATGGTATTTTTTGGTAAAATCAGGGT
1 TAAAATGGTATTTTTTGGTAAAATTAGGGT
*
23694907 TAAAAATGGAATTTT
1 T-AAAATGGTATTTT
23694922 AGAAAGTTTG
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
27 3 0.05
28 20 0.34
30 20 0.34
31 15 0.26
ACGTcount: A:0.36, C:0.01, G:0.24, T:0.39
Consensus pattern (30 bp):
TAAAATGGTATTTTTTGGTAAAATTAGGGT
Found at i:23694862 original size:125 final size:124
Alignment explanation
Indices: 23694695--23694945 Score: 346
Period size: 125 Copynumber: 2.0 Consensus size: 124
23694685 ACCCGGGGGC
* * *
23694695 AAAATGGTAATTTTGGTTGAAATTGGGTCAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGG
1 AAAATGGTAATTTTGGTTAAAATTGGGTCAAAAATGGAATTTTAGAAAGTTTAGGGGTAAAATGG
* *
23694760 TAATTTTTGGTAAAATC-GAGATCAAAAATGGGATTTTAGAAAGTTTAGGGGTAAAATGGT
66 TAATTTTTGGTAAAATCAG-GATCAAAAATGGAATTTTAGAAAGTTT-GGGGGAAAATGGT
* * *
23694820 AAAATGGTATTTTTTGG-TAAAATTAGGGT-TAAAATGGGATTTTAGAAAGTTTAGGGGTAAAAT
1 AAAATGGTA-ATTTTGGTTAAAATT-GGGTCAAAAATGGAATTTTAGAAAGTTTAGGGGTAAAAT
* * *
23694883 GGTATTTTTTGGTAAAATCAGGGTTAAAAATGGAATTTTAGAAAGTTTGGGGGAAAATGGT
64 GGTAATTTTTGGTAAAATCAGGATCAAAAATGGAATTTTAGAAAGTTTGGGGGAAAATGGT
23694944 AA
1 AA
23694946 TTTTAGAAAA
Statistics
Matches: 112, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
124 14 0.12
125 87 0.78
126 11 0.10
ACGTcount: A:0.37, C:0.02, G:0.27, T:0.34
Consensus pattern (124 bp):
AAAATGGTAATTTTGGTTAAAATTGGGTCAAAAATGGAATTTTAGAAAGTTTAGGGGTAAAATGG
TAATTTTTGGTAAAATCAGGATCAAAAATGGAATTTTAGAAAGTTTGGGGGAAAATGGT
Found at i:23694995 original size:30 final size:29
Alignment explanation
Indices: 23694842--23695089 Score: 138
Period size: 30 Copynumber: 8.4 Consensus size: 29
23694832 TTTGGTAAAA
***
23694842 TTAGGGTTAAAATGGGATTTTAG-AAAGT
1 TTAGGGTTAAAATATAATTTTAGAAAAGT
* * * *
23694870 TTAGGGGTAAAATGGTATTTTTTGGTAAAA--
1 TTAGGGTTAAAAT-ATA-ATTTTAG-AAAAGT
*
23694900 TCAGGGTTAAAA-ATGGAATTTTAG-AAAGT
1 TTAGGGTTAAAATAT--AATTTTAGAAAAGT
** * *
23694929 TT-GGGGGAAAATGGTAATTTTAGAAAATT
1 TTAGGGTTAAAAT-ATAATTTTAGAAAAGT
*
23694958 TTAGGGTTAAAATATAATTTTGGAAAAGT
1 TTAGGGTTAAAATATAATTTTAGAAAAGT
*
23694987 TTAGGGGTTAAAATGA-AATTTTAG-AATGTT
1 TTA-GGGTTAAAAT-ATAATTTTAGAAAAG-T
* *
23695017 TTAGGGTCAAAATGTAATTTTCA-AAAAGT
1 TTAGGGTTAAAATATAATTTT-AGAAAAGT
* *
23695046 TTTGAGGTTAAAATGTAATTTTTTAG-AAAGTT
1 TTAG-GGTTAAAATATAA--TTTTAGAAAAG-T
23695078 TTAGGGTTAAAA
1 TTAGGGTTAAAA
23695090 CACCATTTTT
Statistics
Matches: 169, Mismatches: 28, Indels: 43
0.70 0.12 0.18
Matches are distributed among these distances:
27 3 0.02
28 28 0.17
29 51 0.30
30 62 0.37
31 14 0.08
32 11 0.07
ACGTcount: A:0.38, C:0.01, G:0.23, T:0.38
Consensus pattern (29 bp):
TTAGGGTTAAAATATAATTTTAGAAAAGT
Found at i:23695021 original size:59 final size:58
Alignment explanation
Indices: 23694902--23695089 Score: 195
Period size: 59 Copynumber: 3.2 Consensus size: 58
23694892 TGGTAAAATC
* * *
23694902 AGGGTTAAAA-ATGGAATTTTAG-AAAGTTTGGGG-GAAAATGGTAATTTTAGAAAATTTT
1 AGGGTTAAAATAT--AATTTTAGAAAAGTTTGGGGTTAAAAT-GAAATTTTAGAAAGTTTT
* *
23694960 AGGGTTAAAATATAATTTTGGAAAAGTTTAGGGGTTAAAATGAAATTTTAGAATGTTTT
1 AGGGTTAAAATATAATTTTAGAAAAGTTT-GGGGTTAAAATGAAATTTTAGAAAGTTTT
* * * *
23695019 AGGGTCAAAATGTAATTTTCA-AAAAGTTTTGAGGTTAAAATGTAATTTTTTAGAAAGTTTT
1 AGGGTTAAAATATAATTTT-AGAAAAG-TTTGGGGTTAAAATG-AA-ATTTTAGAAAGTTTT
23695080 AGGGTTAAAA
1 AGGGTTAAAA
23695090 CACCATTTTT
Statistics
Matches: 110, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
57 7 0.06
58 17 0.15
59 54 0.49
60 10 0.09
61 22 0.20
ACGTcount: A:0.39, C:0.01, G:0.22, T:0.37
Consensus pattern (58 bp):
AGGGTTAAAATATAATTTTAGAAAAGTTTGGGGTTAAAATGAAATTTTAGAAAGTTTT
Found at i:23696999 original size:29 final size:27
Alignment explanation
Indices: 23696967--23697047 Score: 99
Period size: 28 Copynumber: 2.9 Consensus size: 27
23696957 TATAATAATT
*
23696967 TTAAATTTGAAAATAAATTTAAACTCAAA
1 TTAAATTT-AAAATAAATTTAAA-ACAAA
*
23696996 TTAAATTTAAATTTAAATTTAAAACAAA
1 TTAAATTTAAA-ATAAATTTAAAACAAA
*
23697024 TTTAATCTTAAAATAAATTTAAAA
1 TTAAAT-TTAAAATAAATTTAAAA
23697048 TGGGTTTGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
28 23 0.50
29 23 0.50
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (27 bp):
TTAAATTTAAAATAAATTTAAAACAAA
Found at i:23697005 original size:6 final size:6
Alignment explanation
Indices: 23696966--23697018 Score: 56
Period size: 6 Copynumber: 9.0 Consensus size: 6
23696956 TTATAATAAT
* * *
23696966 TTTAAA TTTGAAA -ATAAA TTTAAA CTCAAA -TTAAA TTTAAA TTTAAA
1 TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
23697013 TTTAAA
1 TTTAAA
23697019 ACAAATTTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
5 7 0.18
6 29 0.74
7 3 0.08
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (6 bp):
TTTAAA
Found at i:23697013 original size:17 final size:17
Alignment explanation
Indices: 23696950--23697014 Score: 69
Period size: 17 Copynumber: 3.8 Consensus size: 17
23696940 GACATTTTAA
*
23696950 TTAAATTTATAA-TAATT
1 TTAAATTTA-AATTAAAT
*
23696967 TTAAATTTGAAAATAAAT
1 TTAAATTT-AAATTAAAT
* *
23696985 TTAAACTCAAATTAAAT
1 TTAAATTTAAATTAAAT
23697002 TTAAATTTAAATT
1 TTAAATTTAAATT
23697015 TAAAACAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
17 29 0.73
18 11 0.28
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.45
Consensus pattern (17 bp):
TTAAATTTAAATTAAAT
Found at i:23697024 original size:17 final size:18
Alignment explanation
Indices: 23697004--23697046 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
23696994 AATTAAATTT
23697004 AAATTTAAAT-TTAAAAC
1 AAATTTAAATCTTAAAAC
*
23697021 AAATTT-AATCTTAAAAT
1 AAATTTAAATCTTAAAAC
23697038 AAATTTAAA
1 AAATTTAAA
23697047 ATGGGTTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 3 0.13
17 18 0.78
18 2 0.09
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATTTAAATCTTAAAAC
Found at i:23697024 original size:23 final size:23
Alignment explanation
Indices: 23696980--23697028 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
23696970 AATTTGAAAA
**
23696980 TAAATTTAAACTCAAATTAAATT
1 TAAATTTAAACTCAAAACAAATT
* *
23697003 TAAATTTAAATTTAAAACAAATT
1 TAAATTTAAACTCAAAACAAATT
23697026 TAA
1 TAA
23697029 TCTTAAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (23 bp):
TAAATTTAAACTCAAAACAAATT
Found at i:23699427 original size:43 final size:44
Alignment explanation
Indices: 23699366--23699457 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 44
23699356 GTACGTTATT
*
23699366 TCCCAAAACAATATGCACAC-ACGGTCTAACACACGCCCGTGTG
1 TCCCAAAACAATATGCACACAACGATCTAACACACGCCCGTGTG
* * *
23699409 TCCCAAAATAGTATGCACACAAACGATCTAGCACACGCCCGTGTG
1 TCCCAAAACAATATGCACAC-AACGATCTAACACACGCCCGTGTG
23699454 -CCCA
1 TCCCA
23699458 GCCCGTGTGC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
43 18 0.42
44 4 0.09
45 21 0.49
ACGTcount: A:0.33, C:0.35, G:0.16, T:0.16
Consensus pattern (44 bp):
TCCCAAAACAATATGCACACAACGATCTAACACACGCCCGTGTG
Found at i:23707826 original size:24 final size:24
Alignment explanation
Indices: 23707788--23707833 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
23707778 TAGGAACACG
*
23707788 GTCTAGTATACGGTCCCTCACATT
1 GTCTAGTACACGGTCCCTCACATT
*
23707812 GTCTAGTACATGGTCCCTCACA
1 GTCTAGTACACGGTCCCTCACA
23707834 CGAGCGTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.30
Consensus pattern (24 bp):
GTCTAGTACACGGTCCCTCACATT
Found at i:23709435 original size:13 final size:12
Alignment explanation
Indices: 23709383--23709432 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
23709373 GCTTTCATTT
*
23709383 TTTATTTTTTTA
1 TTTATTTTTTGA
* **
23709395 CTTATTAATT-A
1 TTTATTTTTTGA
23709406 TTTATTTTTTGA
1 TTTATTTTTTGA
23709418 TTTATTTTTTGA
1 TTTATTTTTTGA
23709430 TTT
1 TTT
23709433 TATATGTAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
11 8 0.26
12 23 0.74
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.74
Consensus pattern (12 bp):
TTTATTTTTTGA
Found at i:23712666 original size:30 final size:30
Alignment explanation
Indices: 23712592--23712666 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
23712582 CTTATGAGGA
*
23712592 CGTTCAGGAACTTGAGAAGACCCAATATCT
1 CGTTCAGGAACTTGGGAAGACCCAATATCT
* * *
23712622 CAATT-AGGAGCTTGGGAAGACTCAATATCT
1 C-GTTCAGGAACTTGGGAAGACCCAATATCT
*
23712652 CGTTCAGGATCTTGG
1 CGTTCAGGAACTTGG
23712667 AATTGAGAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
29 2 0.05
30 33 0.89
31 2 0.05
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (30 bp):
CGTTCAGGAACTTGGGAAGACCCAATATCT
Found at i:23712686 original size:36 final size:35
Alignment explanation
Indices: 23712646--23712767 Score: 103
Period size: 36 Copynumber: 3.6 Consensus size: 35
23712636 GGAAGACTCA
* * *
23712646 ATATCTCGTTCAGGATCTTGGAATTGAGAAGACCTG
1 ATATCTCATTCAAGAGCTT-GAATTGAGAAGACCTG
*
23712682 ATATCTCATTCAAGATCTTG----G-GAAGA-CTCG
1 ATATCTCATTCAAGAGCTTGAATTGAGAAGACCT-G
* *
23712712 ATATCGCATTCAAGAGCTTGAGATTGAGAAGACTTG
1 ATATCTCATTCAAGAGCTTGA-ATTGAGAAGACCTG
* *
23712748 ATATCTCGTTCAGGAGCTTG
1 ATATCTCATTCAAGAGCTTG
23712768 GGAAGATCCG
Statistics
Matches: 70, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
29 2 0.03
30 24 0.34
31 1 0.01
35 2 0.03
36 40 0.57
37 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (35 bp):
ATATCTCATTCAAGAGCTTGAATTGAGAAGACCTG
Found at i:23712715 original size:30 final size:30
Alignment explanation
Indices: 23712632--23712731 Score: 85
Period size: 30 Copynumber: 3.1 Consensus size: 30
23712622 CAATTAGGAG
* * *
23712632 CTTGGGAAGACTCAATATCTCGTTCAGGAT
1 CTTGGGAAGACTCGATATCTCATTCAAGAT
23712662 CTTGGAATTGAGAAGAC-CTGATATCTCATTCAAGAT
1 CTT-G----G-GAAGACTC-GATATCTCATTCAAGAT
* *
23712698 CTTGGGAAGACTCGATATCGCATTCAAGAG
1 CTTGGGAAGACTCGATATCTCATTCAAGAT
23712728 CTTG
1 CTTG
23712732 AGATTGAGAA
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
30 28 0.49
31 3 0.05
35 3 0.05
36 23 0.40
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (30 bp):
CTTGGGAAGACTCGATATCTCATTCAAGAT
Found at i:23712780 original size:66 final size:66
Alignment explanation
Indices: 23712598--23712781 Score: 212
Period size: 66 Copynumber: 2.8 Consensus size: 66
23712588 AGGACGTTCA
** * * * * *
23712598 GGAACTTGAGAAGACCCAATATCTCAATT-AGGAGCTTGGGAAGACTCAATATCTCGTTCAGGAT
1 GGAA-TTGAGAAGACCTGATATCTC-ATTCAGGAGCTTGGGAAGACTCGATATCGCATTCAAGAG
23712662 CTT
64 CTT
* *
23712665 GGAATTGAGAAGACCTGATATCTCATTCAAGATCTTGGGAAGACTCGATATCGCATTCAAGAGCT
1 GGAATTGAGAAGACCTGATATCTCATTCAGGAGCTTGGGAAGACTCGATATCGCATTCAAGAGCT
23712730 T
66 T
* *
23712731 -GAGATTGAGAAGACTTGATATCTCGTTCAGGAGCTTGGGAAGA-TCCGATAT
1 GGA-ATTGAGAAGACCTGATATCTCATTCAGGAGCTTGGGAAGACT-CGATAT
23712782 TTGATTTTTC
Statistics
Matches: 101, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
65 6 0.06
66 91 0.90
67 4 0.04
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (66 bp):
GGAATTGAGAAGACCTGATATCTCATTCAGGAGCTTGGGAAGACTCGATATCGCATTCAAGAGCT
T
Found at i:23713838 original size:19 final size:19
Alignment explanation
Indices: 23713797--23713840 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
23713787 AAGTTAATAT
*
23713797 TTAATTATTTTTTAAAATA
1 TTAATTATTTTTTAAAAAA
23713816 -TAATT-TTTATTTAAAAAA
1 TTAATTATTT-TTTAAAAAA
23713834 TTAATTA
1 TTAATTA
23713841 AATGTCGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
17 3 0.14
18 13 0.62
19 5 0.24
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTAATTATTTTTTAAAAAA
Found at i:23715432 original size:24 final size:25
Alignment explanation
Indices: 23715405--23715452 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
23715395 TTTTATATTT
23715405 TAAAAAAATTATAATTTTT-TAAAA
1 TAAAAAAATTATAATTTTTATAAAA
**
23715429 TAAAAATTTTATAATTTTTATAAA
1 TAAAAAAATTATAATTTTTATAAA
23715453 TATTTTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
TAAAAAAATTATAATTTTTATAAAA
Found at i:23715457 original size:20 final size:20
Alignment explanation
Indices: 23715428--23715485 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
23715418 ATTTTTTAAA
*
23715428 ATAAAAATTTTATAATTTTT
1 ATAAATATTTTATAATTTTT
23715448 ATAAATATTTTA-AA-TTTT
1 ATAAATATTTTATAATTTTT
*
23715466 AAAAATTATTTT-TAATTTTT
1 ATAAA-TATTTTATAATTTTT
23715486 GAAAATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 8 0.24
19 10 0.30
20 15 0.45
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATAAATATTTTATAATTTTT
Found at i:23715471 original size:18 final size:18
Alignment explanation
Indices: 23715429--23715484 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
23715419 TTTTTTAAAA
*
23715429 TAAAAAT-TTTATAATTTT
1 TAAAAATATTT-TAAATTT
*
23715447 TATAAATATTTTAAATTT
1 TAAAAATATTTTAAATTT
*
23715465 TAAAAATTATTTTTAATTT
1 TAAAAA-TATTTTAAATTT
23715484 T
1 T
23715485 TGAAAATGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 17 0.53
19 15 0.47
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TAAAAATATTTTAAATTT
Found at i:23715490 original size:20 final size:19
Alignment explanation
Indices: 23715434--23715497 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
23715424 TAAAATAAAA
23715434 ATTTTATAATTTTTATAAA-T
1 ATTTT-TAATTTTTA-AAATT
* *
23715454 ATTTTAAATTTTAAAAATT
1 ATTTTTAATTTTTAAAATT
*
23715473 ATTTTTAATTTTTGAAAATG
1 ATTTTTAATTTTT-AAAATT
23715493 ATTTT
1 ATTTT
23715498 GATTATTTTG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 3 0.08
19 19 0.51
20 15 0.41
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (19 bp):
ATTTTTAATTTTTAAAATT
Found at i:23721293 original size:24 final size:24
Alignment explanation
Indices: 23721277--23721351 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
23721267 AGTTTGACTC
23721277 AAACAAATAAACAGAGTTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
*
23721301 AAACAAATAAACAAAGTTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
* *
23721325 AAACAATTAAACAGAGTTTAACTG
1 AAACAAATAAACAGAGTTTAATTG
23721349 AAA
1 AAA
23721352 GATTATTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.56, C:0.09, G:0.11, T:0.24
Consensus pattern (24 bp):
AAACAAATAAACAGAGTTTAATTG
Found at i:23723680 original size:42 final size:43
Alignment explanation
Indices: 23723584--23723688 Score: 106
Period size: 42 Copynumber: 2.4 Consensus size: 43
23723574 AAGACTAACT
* * ** *
23723584 TGAGATGAGTCTCACGGATGTGTGTCCAGGTCATGTGAGAGAC
1 TGAGATGAGCCACACGGCCGTGTGTCCAAGTCATGTGAGAGAC
** *
23723627 TGACTTAAGCCACACGGCCGTGTG-CCAAGTCATGTGAG-GTAC
1 TGAGATGAGCCACACGGCCGTGTGTCCAAGTCATGTGAGAG-AC
23723669 TGAGATGAGCCACACAGGCC
1 TGAGATGAGCCACAC-GGCC
23723689 AGTGCGAGGT
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
41 1 0.02
42 27 0.55
43 21 0.43
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.21
Consensus pattern (43 bp):
TGAGATGAGCCACACGGCCGTGTGTCCAAGTCATGTGAGAGAC
Found at i:23723701 original size:42 final size:42
Alignment explanation
Indices: 23723609--23723704 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
23723599 GGATGTGTGT
* *
23723609 CCAGGTCATGTGAGAGACTGACTTAAGCCACACGGCCGTGTG
1 CCAGGTCATGTGAGAGACTGACATAAGCCACACGGCCGAGTG
* * *
23723651 CCAAGTCATGTGAG-GTACTGAGATGAGCCACACAGGCC-AGTG
1 CCAGGTCATGTGAGAG-ACTGACATAAGCCACAC-GGCCGAGTG
*
23723693 CGAGGTCATGTG
1 CCAGGTCATGTG
23723705 GGACACACGG
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 40 0.89
43 4 0.09
ACGTcount: A:0.25, C:0.24, G:0.32, T:0.19
Consensus pattern (42 bp):
CCAGGTCATGTGAGAGACTGACATAAGCCACACGGCCGAGTG
Found at i:23724706 original size:10 final size:10
Alignment explanation
Indices: 23724693--23724717 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23724683 CTAATATTTT
23724693 ATATTAAAAA
1 ATATTAAAAA
23724703 ATATTAAAAA
1 ATATTAAAAA
23724713 ATATT
1 ATATT
23724718 TTTGGATTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
ATATTAAAAA
Found at i:23725438 original size:27 final size:28
Alignment explanation
Indices: 23725401--23725463 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
23725391 AAAAGTTGTT
*
23725401 AAAAAAAATTT-AGATCTTGAAAAACTA
1 AAAAAAAATTTGAGACCTTGAAAAACTA
* * *
23725428 AAAAAAAATTTGAGCCCTTTAAAAATTA
1 AAAAAAAATTTGAGACCTTGAAAAACTA
23725456 AAAAAAAA
1 AAAAAAAA
23725464 ACTAAAAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 11 0.35
28 20 0.65
ACGTcount: A:0.62, C:0.08, G:0.06, T:0.24
Consensus pattern (28 bp):
AAAAAAAATTTGAGACCTTGAAAAACTA
Found at i:23727285 original size:32 final size:32
Alignment explanation
Indices: 23727249--23727327 Score: 131
Period size: 32 Copynumber: 2.5 Consensus size: 32
23727239 ACTCAACATG
23727249 AATTGAATATATGCTCTTTTATTTTTTATAAA
1 AATTGAATATATGCTCTTTTATTTTTTATAAA
* * *
23727281 AATTGAATATATGCCCTTTTATTTTTTTTATA
1 AATTGAATATATGCTCTTTTATTTTTTATAAA
23727313 AATTGAATATATGCT
1 AATTGAATATATGCT
23727328 TATTATCTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.52
Consensus pattern (32 bp):
AATTGAATATATGCTCTTTTATTTTTTATAAA
Found at i:23727724 original size:11 final size:11
Alignment explanation
Indices: 23727703--23727742 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
23727693 CAATAACAAT
*
23727703 AAAATAGTAGC
1 AAAATAATAGC
*
23727714 AATATAATAGC
1 AAAATAATAGC
*
23727725 AAAATGATAGC
1 AAAATAATAGC
23727736 AAAATAA
1 AAAATAA
23727743 AGAAAAAAAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.60, C:0.07, G:0.12, T:0.20
Consensus pattern (11 bp):
AAAATAATAGC
Found at i:23730148 original size:32 final size:32
Alignment explanation
Indices: 23730112--23730181 Score: 74
Period size: 31 Copynumber: 2.2 Consensus size: 32
23730102 AAAATTACAA
*
23730112 AAAAAAAATT-AAAGAGTCTAATTGA-AATTTT-
1 AAAAAAAATTCAAAGA-TATAA-TGATAATTTTC
* *
23730143 TAAAAATATTCAAAGATATAATGATAATTTTC
1 AAAAAAAATTCAAAGATATAATGATAATTTTC
23730175 AAAAAAA
1 AAAAAAA
23730182 TTTGAGGGCC
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
30 3 0.10
31 18 0.58
32 10 0.32
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (32 bp):
AAAAAAAATTCAAAGATATAATGATAATTTTC
Found at i:23741172 original size:29 final size:29
Alignment explanation
Indices: 23741132--23741648 Score: 220
Period size: 29 Copynumber: 17.5 Consensus size: 29
23741122 CTCGAGGGGC
*
23741132 AAAATGGTAATTTTGGGAAAGTTTAGGGTT
1 AAAATGG-AATTTTTGGAAAGTTTAGGGTT
* *
23741162 AAAATGGAATTTTTAGATA-TTTGAGGG-T
1 AAAATGGAATTTTTGGAAAGTTT-AGGGTT
* * *
23741190 AAAATGGTAAATTTTGG-AAGGTTCGGGTTT
1 AAAATGG-AATTTTTGGAAAGTTTAGGG-TT
* *
23741220 CAAAATGGAATTTTTAGACA-TTTGAGGG-T
1 -AAAATGGAATTTTTGGAAAGTTT-AGGGTT
* * *** * * *
23741249 AAAATGGTAATTTTAGAAAAAAATCGAGCTAA
1 AAAATGG-AATTTTTGGAAAGTTTAG-GGT-T
*
23741281 AAAATGGAATTTTAGG-AAGTTTGAGGG-T
1 AAAATGGAATTTTTGGAAAGTTT-AGGGTT
* * * *
23741309 AAAATGGTAATTTTTTGG-AAGAATCAAGGTCA
1 AAAATGG-AA-TTTTTGGAAAG-TTTAGGGT-T
* *
23741341 AAAAT-TAGATTTTT-GAAAGTTTAGGGGT
1 AAAATGGA-ATTTTTGGAAAGTTTAGGGTT
** * *
23741369 AAAATGGTAATTTTTGG-AAGAATCGAGGTC
1 AAAATGG-AATTTTTGGAAAGTTTAG-GGTT
* *
23741399 AAGAATGGAA-TTTTGG-AAGTTTGGGGGT
1 AA-AATGGAATTTTTGGAAAGTTTAGGGTT
* ** ** *
23741427 AAAATGGTAATATTTGGAAAAATCGGGGTCA
1 AAAATGG-AATTTTTGGAAAGTTTAGGGT-T
*
23741458 AAAATGGAATTTTTGG-AAGTTTAAGGGTA
1 AAAATGGAATTTTTGGAAAGTTT-AGGGTT
* *
23741487 AAAATGTAATTTTTAGAAAGTTTAGGGTT
1 AAAATGGAATTTTTGGAAAGTTTAGGGTT
* *
23741516 AAAATGGAA-TTTTGGAAAATTTAGGGGTA
1 AAAATGGAATTTTTGGAAAGTTTA-GGGTT
** * *
23741545 AAAATATAATTTTTAGAAAGTTTAAGGTT
1 AAAATGGAATTTTTGGAAAGTTTAGGGTT
* * *
23741574 AAAAAT-GAAATTTTGGAAAATTTAAGGGTA
1 -AAAATGGAATTTTTGGAAAGTTT-AGGGTT
* * *
23741604 AAAATGTAATTTTTGGACAAGATTGAGGGTC
1 AAAATGGAATTTTTGGA-AAG-TTTAGGGTT
* *
23741635 AAAAAGTAATTTTT
1 AAAATGGAATTTTT
23741649 AGAGAGTTCG
Statistics
Matches: 361, Mismatches: 87, Indels: 77
0.69 0.17 0.15
Matches are distributed among these distances:
27 5 0.01
28 52 0.14
29 129 0.36
30 107 0.30
31 54 0.15
32 14 0.04
ACGTcount: A:0.39, C:0.03, G:0.25, T:0.34
Consensus pattern (29 bp):
AAAATGGAATTTTTGGAAAGTTTAGGGTT
Found at i:23741176 original size:59 final size:57
Alignment explanation
Indices: 23741102--23741262 Score: 200
Period size: 59 Copynumber: 2.8 Consensus size: 57
23741092 TACCCGGGAG
* * * *
23741102 TAAAATGGTAA-TTTTAGACACTCGAGGGGCAAAATGGTAATTTTGGGAAAGTTTAGGG-T
1 TAAAATGG-AATTTTTAGACATTTGA-GGGTAAAATGGTAATTTT-GG-AAGGTTAGGGTT
* *
23741161 TAAAATGGAATTTTTAGATATTTGAGGGTAAAATGGTAAATTTTGGAAGGTTCGGGTT
1 TAAAATGGAATTTTTAGACATTTGAGGGTAAAATGGT-AATTTTGGAAGGTTAGGGTT
23741219 TCAAAATGGAATTTTTAGACATTTGAGGGTAAAATGGTAATTTT
1 T-AAAATGGAATTTTTAGACATTTGAGGGTAAAATGGTAATTTT
23741263 AGAAAAAAAT
Statistics
Matches: 91, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
57 8 0.09
58 23 0.25
59 60 0.66
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.35
Consensus pattern (57 bp):
TAAAATGGAATTTTTAGACATTTGAGGGTAAAATGGTAATTTTGGAAGGTTAGGGTT
Found at i:23741294 original size:59 final size:58
Alignment explanation
Indices: 23741162--23741499 Score: 327
Period size: 59 Copynumber: 5.7 Consensus size: 58
23741152 GTTTAGGGTT
**
23741162 AAAATGGAATTTTTAGATA-TTTGAGGGTAAAATGGTAAATTTTGGAAGGTTCG-GGTTTC-
1 AAAATGGAATTTTTAGA-AGTTTGAGGGTAAAATGGT-AATTTTGGAAGAATCGAGG--TCA
* * * *
23741221 AAAATGGAATTTTTAGACA-TTTGAGGGTAAAATGGTAATTTTAGAAAAAAATCGAGCTAA
1 AAAATGGAATTTTTAGA-AGTTTGAGGGTAAAATGGTAATTTT-G-GAAGAATCGAGGTCA
*
23741281 AAAATGGAA-TTTTAGGAAGTTTGAGGGTAAAATGGTAATTTTTTGGAAGAATCAAGGTCA
1 AAAATGGAATTTTTA-GAAGTTTGAGGGTAAAATGGTAA--TTTTGGAAGAATCGAGGTCA
*
23741341 AAAAT-TAGATTTTT-GAAAGTTT-AGGGGTAAAATGGTAATTTTTGGAAGAATCGAGGTCA
1 AAAATGGA-ATTTTTAG-AAGTTTGA-GGGTAAAATGGTAA-TTTTGGAAGAATCGAGGTCA
* * * * *
23741400 AGAATGGAA-TTTTGGAAGTTTGGGGGTAAAATGGTAATATTTGGAAAAATCGGGGTCA
1 AAAATGGAATTTTTAGAAGTTTGAGGGTAAAATGGTAAT-TTTGGAAGAATCGAGGTCA
* *
23741458 AAAATGGAATTTTTGGAAGTTTAAGGGTAAAAAT-GTAATTTT
1 AAAATGGAATTTTTAGAAGTTTGAGGGT-AAAATGGTAATTTT
23741500 TAGAAAGTTT
Statistics
Matches: 239, Mismatches: 22, Indels: 37
0.80 0.07 0.12
Matches are distributed among these distances:
57 1 0.00
58 58 0.24
59 93 0.39
60 77 0.32
61 6 0.03
62 4 0.02
ACGTcount: A:0.38, C:0.03, G:0.26, T:0.33
Consensus pattern (58 bp):
AAAATGGAATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTGGAAGAATCGAGGTCA
Found at i:23741607 original size:59 final size:59
Alignment explanation
Indices: 23741457--23741617 Score: 245
Period size: 58 Copynumber: 2.7 Consensus size: 59
23741447 AATCGGGGTC
* * *
23741457 AAAAATGGAATTTTTGG-AAGTTTAAGGGTAAAAATGTAATTTTTAGAAAGTTTAGGGTT
1 AAAAAT-GAAATTTTGGAAAATTTAAGGGTAAAAATGTAATTTTTAGAAAGTTTAAGGTT
* * *
23741516 -AAAATGGAATTTTGGAAAATTTAGGGGTAAAAATATAATTTTTAGAAAGTTTAAGGTT
1 AAAAATGAAATTTTGGAAAATTTAAGGGTAAAAATGTAATTTTTAGAAAGTTTAAGGTT
23741574 AAAAATGAAATTTTGGAAAATTTAAGGGTAAAAATGTAATTTTT
1 AAAAATGAAATTTTGGAAAATTTAAGGGTAAAAATGTAATTTTT
23741618 GGACAAGATT
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
57 8 0.09
58 43 0.47
59 40 0.44
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (59 bp):
AAAAATGAAATTTTGGAAAATTTAAGGGTAAAAATGTAATTTTTAGAAAGTTTAAGGTT
Found at i:23741664 original size:30 final size:31
Alignment explanation
Indices: 23741598--23741682 Score: 88
Period size: 30 Copynumber: 2.8 Consensus size: 31
23741588 GGAAAATTTA
*
23741598 AGGGT-AAAAATGTAATTTTTGGACAAGATTG
1 AGGGTCAAAAA-GTAATTTTTAGACAAGATTG
*
23741629 AGGGTCAAAAAGTAATTTTTAGA-GAG-TTCG
1 AGGGTCAAAAAGTAATTTTTAGACAAGATT-G
*
23741659 AGGGTCAAAATA-TGATTTTTAGAC
1 AGGGTCAAAA-AGTAATTTTTAGAC
23741683 TGTTTAGGGA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
29 2 0.04
30 23 0.49
31 17 0.36
32 5 0.11
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.32
Consensus pattern (31 bp):
AGGGTCAAAAAGTAATTTTTAGACAAGATTG
Found at i:23743327 original size:14 final size:14
Alignment explanation
Indices: 23743308--23743338 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
23743298 TTGGGCCCAA
23743308 TTTGTAATTGGACT
1 TTTGTAATTGGACT
*
23743322 TTTGTATTTGGACT
1 TTTGTAATTGGACT
23743336 TTT
1 TTT
23743339 ATTAAATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.19, T:0.58
Consensus pattern (14 bp):
TTTGTAATTGGACT
Found at i:23743360 original size:17 final size:18
Alignment explanation
Indices: 23743340--23743425 Score: 57
Period size: 17 Copynumber: 5.3 Consensus size: 18
23743330 TGGACTTTTA
* *
23743340 TTAAATTTA-TAATAATT
1 TTAAATTTACAAATAAAT
23743357 TTAAATTTACAAATAAAT
1 TTAAATTTACAAATAAAT
*
23743375 TT-AA---AC--TTAAAT
1 TTAAATTTACAAATAAAT
*
23743387 TTCAATTTA-AAATAAAT
1 TTAAATTTACAAATAAAT
23743404 TT-AATCTTA-AAATAAAT
1 TTAAAT-TTACAAATAAAT
23743421 TTAAA
1 TTAAA
23743426 ATGGGTTTAG
Statistics
Matches: 56, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
12 7 0.12
13 2 0.04
14 2 0.04
16 4 0.07
17 31 0.55
18 10 0.18
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (18 bp):
TTAAATTTACAAATAAAT
Found at i:23743373 original size:29 final size:28
Alignment explanation
Indices: 23743341--23743427 Score: 88
Period size: 29 Copynumber: 3.0 Consensus size: 28
23743331 GGACTTTTAT
*
23743341 TAAATTTATAA-TAATTTTAAATTTACAAA
1 TAAATTTA-AACTAAATTTAAATTTA-AAA
*
23743370 TAAATTTAAACTTAAATTTCAATTTAAAA
1 TAAATTTAAAC-TAAATTTAAATTTAAAA
* *
23743399 TAAATTTAATCTTAAA-ATAAATTTAAAA
1 TAAATTTAAAC-TAAATTTAAATTTAAAA
23743427 T
1 T
23743428 GGGTTTAGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
28 13 0.25
29 26 0.51
30 12 0.24
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.43
Consensus pattern (28 bp):
TAAATTTAAACTAAATTTAAATTTAAAA
Found at i:23744121 original size:11 final size:11
Alignment explanation
Indices: 23744100--23744139 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
23744090 CAATAACAAT
*
23744100 AAAATAGTAGC
1 AAAATAATAGC
*
23744111 AATATAATAGC
1 AAAATAATAGC
*
23744122 AAAATGATAGC
1 AAAATAATAGC
23744133 AAAATAA
1 AAAATAA
23744140 AGGAAAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.60, C:0.07, G:0.12, T:0.20
Consensus pattern (11 bp):
AAAATAATAGC
Found at i:23745319 original size:43 final size:42
Alignment explanation
Indices: 23745220--23745443 Score: 286
Period size: 43 Copynumber: 5.3 Consensus size: 42
23745210 CGCTAAAGAT
* * * *
23745220 AACGCCGCTATAGAACATGGTTTTTAGCGACGTTTTTCCACA
1 AACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCACA
* *
23745262 AACGCCGCAAAAGAACATGGTCTTTAGCGGTGCTTTTCACACA
1 AACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTC-CACA
* * * *
23745305 AACGCCGCTAAAGAACATGATTTTTAGCGGCGCTTTCCCAAA
1 AACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCACA
* *
23745347 AATGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTTCCACA
1 AACGCCGCTAAAGAACATGGTCTTTAGCGGCGC-TTTTCCACA
* *
23745390 AATGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCATACA
1 AACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTC-CACA
*
23745433 AACGCCACTAA
1 AACGCCGCTAA
23745444 CATTAATAAA
Statistics
Matches: 159, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
42 71 0.45
43 88 0.55
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
AACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCACA
Found at i:23745363 original size:85 final size:85
Alignment explanation
Indices: 23745220--23745425 Score: 288
Period size: 85 Copynumber: 2.4 Consensus size: 85
23745210 CGCTAAAGAT
* * * * * *
23745220 AACGCCGCTATAGAACATGGTTTTTAGCGACGTTTTTCCACAAACGCCGCAAAAGAACATGGTCT
1 AACGCCGCTAAAGAACATGGTTTTTAGCGGCGCTTTCCCAAAAACGCCGCAAAAGAACATGATCT
*
23745285 TTAGCGGTGC-TTTTCACACA
66 TTAGCGGCGCTTTTTC-CACA
* * *
23745305 AACGCCGCTAAAGAACATGATTTTTAGCGGCGCTTTCCCAAAAATGCCGCTAAAGAACATGATCT
1 AACGCCGCTAAAGAACATGGTTTTTAGCGGCGCTTTCCCAAAAACGCCGCAAAAGAACATGATCT
23745370 TTAGCGGCGCTTTTTCCACA
66 TTAGCGGCGCTTTTTCCACA
* *
23745390 AATGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTT
1 AACGCCGCTAAAGAACATGGTTTTTAGCGGCGCTTT
23745426 TCATACAAAC
Statistics
Matches: 107, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
85 102 0.95
86 5 0.05
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (85 bp):
AACGCCGCTAAAGAACATGGTTTTTAGCGGCGCTTTCCCAAAAACGCCGCAAAAGAACATGATCT
TTAGCGGCGCTTTTTCCACA
Found at i:23749068 original size:41 final size:41
Alignment explanation
Indices: 23749000--23749421 Score: 473
Period size: 41 Copynumber: 10.3 Consensus size: 41
23748990 AAACTCAACT
* * * *
23749000 TTTAGCGGCGCTTT-TTCAAAAGCGCCGCTATTGATCTGACA
1 TTTAGCGGCGCTTTCCT-ATAAGCGCCGCTATTGCTCTGACC
*
23749041 TTTAGCGGCGCTTTCCTATAAGTGCCGCTATTGCTCTGACC
1 TTTAGCGGCGCTTTCCTATAAGCGCCGCTATTGCTCTGACC
* *
23749082 TTTAGCGGCGCTTT-CTCATAAGCGCCGCTATTACTCTGATC
1 TTTAGCGGCGCTTTCCT-ATAAGCGCCGCTATTGCTCTGACC
23749123 TTTAGCGGCGC-TTCCTCATAAGCGCCGCTATTGCTCTGACC
1 TTTAGCGGCGCTTTCCT-ATAAGCGCCGCTATTGCTCTGACC
* * * *
23749164 TTTAGCGGCGCTTCCCCATAAGCGCCGCTATTGCTTTGATC
1 TTTAGCGGCGCTTTCCTATAAGCGCCGCTATTGCTCTGACC
* *
23749205 TTTAGCGGCACTTTTCT-TCAAGCGCCGCTATTGCTCTGACC
1 TTTAGCGGCGCTTTCCTAT-AAGCGCCGCTATTGCTCTGACC
* * *
23749246 TTTAACGGCTC-TTCCATATAAGCGCCGCTATTACTCTGACC
1 TTTAGCGGCGCTTTCC-TATAAGCGCCGCTATTGCTCTGACC
* * *
23749287 TTTAGCGGCACTTTTCC-CTAAGCGCCGCTATTTCTCTGACC
1 TTTAGCGGCGC-TTTCCTATAAGCGCCGCTATTGCTCTGACC
* * * *
23749328 TTTAGAGGCGCTTTTCTATAAGCGCCGCTATTTCTCTAACC
1 TTTAGCGGCGCTTTCCTATAAGCGCCGCTATTGCTCTGACC
*** * *
23749369 TTTAGCGGCGCTTAT-GGGTAAGCGCCGCTATTGCTC-CACT
1 TTTAGCGGCGCTT-TCCTATAAGCGCCGCTATTGCTCTGACC
23749409 TTTAGCGGCGCTT
1 TTTAGCGGCGCTT
23749422 GATCTACTTT
Statistics
Matches: 330, Mismatches: 40, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
40 27 0.08
41 293 0.89
42 6 0.02
43 4 0.01
ACGTcount: A:0.17, C:0.30, G:0.21, T:0.33
Consensus pattern (41 bp):
TTTAGCGGCGCTTTCCTATAAGCGCCGCTATTGCTCTGACC
Found at i:23777593 original size:42 final size:42
Alignment explanation
Indices: 23777522--23778047 Score: 617
Period size: 42 Copynumber: 12.5 Consensus size: 42
23777512 AACTACAGTA
* * *
23777522 ACCATTCAATCTCTTACCCCCAACCATGGGGCAGATTAAAGAC
1 ACCATCCAATCTCTTA-CCCCAACCATGAGGCAGATTGAAGAC
* * * *
23777565 ACTATCCAATCTCTTACACCAACCATGGGGTAGATTGAAGAC
1 ACCATCCAATCTCTTACCCCAACCATGAGGCAGATTGAAGAC
*
23777607 ACCATCCAATCTCTTACCCCAACCATGAGGCTGATTGAAGAC
1 ACCATCCAATCTCTTACCCCAACCATGAGGCAGATTGAAGAC
* *
23777649 ACCATTCAATCTCTTACCCCAACCATGAGGCAAATTGAAGAC
1 ACCATCCAATCTCTTACCCCAACCATGAGGCAGATTGAAGAC
* * * *
23777691 ACCATCCAATCTTTTACCCCAACTAT-AGGGTAAATTGAAGAC
1 ACCATCCAATCTCTTACCCCAACCATGA-GGCAGATTGAAGAC
* * *
23777733 ACCATCCAATCTCTTACCCCAACCATGGGGTAGATTGAGGAC
1 ACCATCCAATCTCTTACCCCAACCATGAGGCAGATTGAAGAC
*
23777775 ACCATCCAATCTCTTACCCCAATCATGAGGCAGATTGAAGAC
1 ACCATCCAATCTCTTACCCCAACCATGAGGCAGATTGAAGAC
** *
23777817 ACCATCCAATCTCTTACCCCAATGACGAGGCAGATTGAAGAC
1 ACCATCCAATCTCTTACCCCAACCATGAGGCAGATTGAAGAC
*** * *
23777859 ACCATTTGATCTCTTACCCCAACCATAAGGCAAATTGAAGAC
1 ACCATCCAATCTCTTACCCCAACCATGAGGCAGATTGAAGAC
* * *
23777901 ACCATCTAATCTCTTACCCTAACCAT-AGGGCAAATTGAAGAC
1 ACCATCCAATCTCTTACCCCAACCATGA-GGCAGATTGAAGAC
* * ** * *
23777943 TCTATCCAATCTCTTATGCTAACCATGAGGCAGATTAAAGAC
1 ACCATCCAATCTCTTACCCCAACCATGAGGCAGATTGAAGAC
** * *
23777985 TTCATCCAATCTCTTACCCTAACCAT-AGGGCAAATTGAAGAC
1 ACCATCCAATCTCTTACCCCAACCATGA-GGCAGATTGAAGAC
* * *
23778027 TCTATCCAATCTTTTACCCCA
1 ACCATCCAATCTCTTACCCCA
23778048 TCCAAAGGGC
Statistics
Matches: 422, Mismatches: 56, Indels: 11
0.86 0.11 0.02
Matches are distributed among these distances:
41 3 0.01
42 404 0.96
43 15 0.04
ACGTcount: A:0.33, C:0.30, G:0.13, T:0.24
Consensus pattern (42 bp):
ACCATCCAATCTCTTACCCCAACCATGAGGCAGATTGAAGAC
Found at i:23778084 original size:39 final size:41
Alignment explanation
Indices: 23777598--23778105 Score: 237
Period size: 42 Copynumber: 12.2 Consensus size: 41
23777588 CATGGGGTAG
* * * * **
23777598 ATTGAAGACACCATCCAATCTCTTACCCCAACC-ATGAGGCTG
1 ATTGAAGAC-TCATCCAATCTTTTACCCCATCCAAAG-GGCAA
* * * * *
23777640 ATTGAAGACACCATTCAATCTCTTACCCCAACC-ATGAGGCAA
1 ATTGAAGAC-TCATCCAATCTTTTACCCCATCCAAAG-GGCAA
* * * * *
23777682 ATTGAAGACACCATCCAATCTTTTACCCCAACTATAGGGTAA
1 ATTGAAGAC-TCATCCAATCTTTTACCCCATCCAAAGGGCAA
* * * ** * *
23777724 ATTGAAGACACCATCCAATCTCTTACCCCAACCATGGGGTAG
1 ATTGAAGAC-TCATCCAATCTTTTACCCCATCCAAAGGGCAA
* * * * *
23777766 ATTGAGGACACCATCCAATCTCTTACCCCAAT-C-ATGAGGCAG
1 ATTGAAGAC-TCATCCAATCTTTTACCCC-ATCCAAAG-GGCAA
* * * * *
23777808 ATTGAAGACACCATCCAATCTCTTACCCCAAT--GACGAGGCAG
1 ATTGAAGAC-TCATCCAATCTTTTACCCC-ATCCAAAG-GGCAA
* *** * *
23777850 ATTGAAGACACCATTTGATCTCTTACCCCAACCATAA-GGCAA
1 ATTGAAGAC-TCATCCAATCTTTTACCCCATCCA-AAGGGCAA
* * * * * *
23777892 ATTGAAGACACCATCTAATCTCTTACCCTAACCATAGGGCAA
1 ATTGAAGAC-TCATCCAATCTTTTACCCCATCCAAAGGGCAA
* ** * * * *
23777934 ATTGAAGACTCTATCCAATCTCTTATGCTAACC-ATGAGGCAG
1 ATTGAAGACTC-ATCCAATCTTTTACCCCATCCAAAG-GGCAA
* * * * *
23777976 ATTAAAGACTTCATCCAATCTCTTACCCTAACCATAGGGCAA
1 ATTGAAGAC-TCATCCAATCTTTTACCCCATCCAAAGGGCAA
23778018 ATTGAAGACTCTATCCAATCTTTTACCCCATCCAAAGGGCAA
1 ATTGAAGACTC-ATCCAATCTTTTACCCCATCCAAAGGGCAA
*
23778060 ATTGAA-A-TCATCCAATCTTTTACCCCATCTAGAAGGG-AA
1 ATTGAAGACTCATCCAATCTTTTACCCCATCCA-AAGGGCAA
23778099 ATTGAAG
1 ATTGAAG
23778106 TATGAAAGCG
Statistics
Matches: 401, Mismatches: 50, Indels: 32
0.83 0.10 0.07
Matches are distributed among these distances:
39 29 0.07
40 7 0.02
41 8 0.02
42 351 0.88
43 5 0.01
44 1 0.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (41 bp):
ATTGAAGACTCATCCAATCTTTTACCCCATCCAAAGGGCAA
Found at i:23784990 original size:14 final size:14
Alignment explanation
Indices: 23784960--23785001 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
23784950 TAATTGACAT
23784960 AATTTAAAATAAA-A
1 AATTTAAAA-AAATA
23784974 AATTTAAAAAAATA
1 AATTTAAAAAAATA
*
23784988 AATATTATAAAAAT
1 AAT-TTAAAAAAAT
23785002 GAATGTTGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 3 0.12
14 13 0.52
15 9 0.36
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AATTTAAAAAAATA
Found at i:23785252 original size:40 final size:40
Alignment explanation
Indices: 23785194--23785307 Score: 165
Period size: 40 Copynumber: 2.9 Consensus size: 40
23785184 TTTGGATCGA
* * *
23785194 AAACGCAGCAAAAAGTAAAGCAATAGCGGCGTTTTTTCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTTTCTCAT
* * *
23785234 GAACGCGGTAAAAGGTAAAGCAATAGCGGCGTTTTCTCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTTTCTCAT
*
23785274 AAACGCCGCAAAAGGTAAAGCAATAACGGCGTTT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTT
23785308 ATGGGGAAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (40 bp):
AAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTTTCTCAT
Found at i:23785331 original size:41 final size:40
Alignment explanation
Indices: 23785194--23785337 Score: 146
Period size: 40 Copynumber: 3.5 Consensus size: 40
23785184 TTTGGATCGA
* * * **
23785194 AAACGCAGCAAAAAGTAAAGCAATAGCGGCGTTTTTTCAT
1 AAACGCCGCAAAAGGTAAAGCAATAACGGCGTTTTCGCAT
* * * * *
23785234 GAACGCGGTAAAAGGTAAAGCAATAGCGGCGTTTTCTCAT
1 AAACGCCGCAAAAGGTAAAGCAATAACGGCGTTTTCGCAT
* *
23785274 AAACGCCGCAAAAGGTAAAGCAATAACGGCGTTTATGGGGA-
1 AAACGCCGCAAAAGGTAAAGCAATAACGGCGTTT-T-CGCAT
23785315 AAACGCCGCAAAAGGTAAGAGCA
1 AAACGCCGCAAAAGGTAA-AGCA
23785338 TTAGTAGCAT
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
40 65 0.73
41 19 0.21
42 5 0.06
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.17
Consensus pattern (40 bp):
AAACGCCGCAAAAGGTAAAGCAATAACGGCGTTTTCGCAT
Found at i:23785400 original size:81 final size:81
Alignment explanation
Indices: 23785315--23785479 Score: 188
Period size: 81 Copynumber: 2.0 Consensus size: 81
23785305 TTTATGGGGA
* * * *
23785315 AAACGCCGCAAAAGGTAAGAGCATTAGTAGCATTTATGACAAAACACCACAAAAGGTAAGAGCAT
1 AAACGCCACAAAAGATAAGAGCATTAGCAGCATTTATGACAAAACACCACAAAAGATAAGAGCAT
23785380 T-ACCGACGTTTATAAG
66 TCA-CGACGTTTATAAG
* * * * * * **
23785396 AAACGTCACGAAAGATAAGAGCATTAGCGGTATTTATGAGAAAACGCTGCAAAAGATAAGAGCAT
1 AAACGCCACAAAAGATAAGAGCATTAGCAGCATTTATGACAAAACACCACAAAAGATAAGAGCAT
* *
23785461 TCACGGCGTTTATAGG
66 TCACGACGTTTATAAG
23785477 AAA
1 AAA
23785480 AACTCCGCTA
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
81 68 0.99
82 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.19
Consensus pattern (81 bp):
AAACGCCACAAAAGATAAGAGCATTAGCAGCATTTATGACAAAACACCACAAAAGATAAGAGCAT
TCACGACGTTTATAAG
Found at i:23785473 original size:41 final size:40
Alignment explanation
Indices: 23785274--23785512 Score: 173
Period size: 41 Copynumber: 5.8 Consensus size: 40
23785264 GTTTTCTCAT
* *
23785274 AAACGCCGCAAAAGGTAA-AGCAATAACGGCGTTTATGGGGA
1 AAACGCCGCAAAAGGTAAGAGC-ATTACGGCGTTTAT-GAGA
* *
23785315 AAACGCCGCAAAAGGTAAGAGCATTA-GTAGCATTTATGACA
1 AAACGCCGCAAAAGGTAAGAGCATTACG--GCGTTTATGAGA
* * * *
23785356 AAACACCACAAAAGGTAAGAGCATTACCGACGTTTATAAG-
1 AAACGCCGCAAAAGGTAAGAGCATTA-CGGCGTTTATGAGA
* * * * **
23785396 AAACGTCACGAAAGATAAGAGCATTAGCGGTATTTATGAGA
1 AAACGCCGCAAAAGGTAAGAGCATTA-CGGCGTTTATGAGA
* *
23785437 AAACGCTGCAAAAGATAAGAGCATTCACGGCGTTTAT-AGGAA
1 AAACGCCGCAAAAGGTAAGAGCATT-ACGGCGTTTATGA-G-A
* * * *
23785479 AAACTCCGCTAAAGGTTA-AGCAATAGCGGCGTTT
1 AAACGCCGCAAAAGGTAAGAGCATTA-CGGCGTTT
23785513 TCCCATAAAC
Statistics
Matches: 157, Mismatches: 31, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
40 34 0.22
41 97 0.62
42 25 0.16
43 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.19
Consensus pattern (40 bp):
AAACGCCGCAAAAGGTAAGAGCATTACGGCGTTTATGAGA
Found at i:23788218 original size:18 final size:18
Alignment explanation
Indices: 23788197--23788231 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23788187 AAATTATTTG
*
23788197 ACCGAATTAGATCGATTA
1 ACCGAATTAAATCGATTA
23788215 ACCGAATTAAATCGATT
1 ACCGAATTAAATCGATT
23788232 CGATCGATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (18 bp):
ACCGAATTAAATCGATTA
Found at i:23795295 original size:19 final size:19
Alignment explanation
Indices: 23795235--23795296 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
23795225 GAGAGAAAAT
*
23795235 AGAAAG-GAAAGAAA-AAA
1 AGAAAGAGAAAGAAATGAA
23795252 AGAAA-A-AAAGAAATGAA
1 AGAAAGAGAAAGAAATGAA
*
23795269 AGAGAGAGAAAGAAATGTAA
1 AGAAAGAGAAAGAAATG-AA
23795289 A-AAAGAGA
1 AGAAAGAGA
23795297 GGAAATAAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
16 7 0.19
17 11 0.30
18 1 0.03
19 15 0.41
20 3 0.08
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.05
Consensus pattern (19 bp):
AGAAAGAGAAAGAAATGAA
Found at i:23798414 original size:20 final size:20
Alignment explanation
Indices: 23798389--23798437 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
23798379 TTTCCCTCAA
* *
23798389 ATTGTTTTATTTGTAATATT
1 ATTGTTTTATTTATAAAATT
23798409 ATTGTTTTATTTATAAAATT
1 ATTGTTTTATTTATAAAATT
*
23798429 ATTATTTTA
1 ATTGTTTTA
23798438 ATAAATAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (20 bp):
ATTGTTTTATTTATAAAATT
Found at i:23798457 original size:19 final size:20
Alignment explanation
Indices: 23798424--23798463 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
23798414 TTTATTTATA
* *
23798424 AAATTATTATTTTAATAAAT
1 AAATTATTATGTTAAAAAAT
23798444 AAATT-TTATGTTAAAAAAT
1 AAATTATTATGTTAAAAAAT
23798463 A
1 A
23798464 GAAAAATGCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (20 bp):
AAATTATTATGTTAAAAAAT
Found at i:23798568 original size:22 final size:22
Alignment explanation
Indices: 23798541--23798592 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
23798531 AAAAACAAGC
23798541 TTTTAA-ATTTA-TTTTTAGAAAT
1 TTTTAATATTTAGTTTTT-G-AAT
*
23798563 TTTTAATTTTTAGTTTTTGAAT
1 TTTTAATATTTAGTTTTTGAAT
23798585 TTTTAATA
1 TTTTAATA
23798593 ATCAAGACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 16 0.62
23 5 0.19
24 5 0.19
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (22 bp):
TTTTAATATTTAGTTTTTGAAT
Found at i:23822586 original size:4 final size:4
Alignment explanation
Indices: 23822577--23822603 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
23822567 CAGTGCCATG
23822577 CATA CATA CATA CATA CATA CATA CAT
1 CATA CATA CATA CATA CATA CATA CAT
23822604 GGCTAATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (4 bp):
CATA
Found at i:23829362 original size:16 final size:16
Alignment explanation
Indices: 23829341--23829374 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
23829331 ACTTGTTTAC
23829341 ATAAATAATATA-AAAA
1 ATAAATAAT-TACAAAA
23829357 ATAAATAATTACAAAA
1 ATAAATAATTACAAAA
23829373 AT
1 AT
23829375 GGGATAGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 15 0.88
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
ATAAATAATTACAAAA
Found at i:23830391 original size:25 final size:25
Alignment explanation
Indices: 23830336--23830391 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
23830326 ATGAGGGGCT
**
23830336 AATTAATTTAATAAAATTTTTTTGA
1 AATTAATTTAATAAAATACTTTTGA
* *
23830361 ATTTAATTTAATCAAATAACTTTT-A
1 AATTAATTTAATAAAAT-ACTTTTGA
23830386 AATTAA
1 AATTAA
23830392 AGGTGTTATG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (25 bp):
AATTAATTTAATAAAATACTTTTGA
Found at i:23837876 original size:56 final size:57
Alignment explanation
Indices: 23837800--23837952 Score: 159
Period size: 56 Copynumber: 2.7 Consensus size: 57
23837790 ATCGAATAAA
* * * *
23837800 AAAAATATTTTTTTGGGTGTTTGCCACCCAATGGCCTT-CACCACTTTTTTCAGATTT
1 AAAAATA-TTTTTTGGGTGTTTGCCACTCAATGGACTTACACCACATTTTTCAAATTT
* * * * *
23837857 AAAAATATTTTTTGGGTGTTTACCATTCTAT-GATTTACATCACATTTTTCAAATTT
1 AAAAATATTTTTTGGGTGTTTGCCACTCAATGGACTTACACCACATTTTTCAAATTT
** * *
23837913 AAAAATATTTTTTAAGTGTTTGTCACTCAAT-GACCTACAC
1 AAAAATATTTTTTGGGTGTTTGCCACTCAATGGACTTACAC
23837953 TATTTTTTGG
Statistics
Matches: 77, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
55 3 0.04
56 67 0.87
57 7 0.09
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (57 bp):
AAAAATATTTTTTGGGTGTTTGCCACTCAATGGACTTACACCACATTTTTCAAATTT
Found at i:23837964 original size:91 final size:92
Alignment explanation
Indices: 23837862--23838044 Score: 280
Period size: 91 Copynumber: 2.0 Consensus size: 92
23837852 GATTTAAAAA
* * * *
23837862 TATTTTTTGGGTGTTTACCATTCTATGATTTACATCACATTTTTCAAATTTAAAAAT-ATTTTTT
1 TATTTTTTGGGTGTTTACCACTCAATGATCTACACCACATTTTTCAAATTTAAAAATAATTTTTT
23837926 AAGTGTTTGTCA-CTCAATGACCTACAC
66 AAGTGTTTGTCACCT-AATGACCTACAC
*
23837953 TATTTTTTGGGTGTTTGCCACTCAATGATCTACACCACATTTTTCAAATTTAAAAATAATTTTTT
1 TATTTTTTGGGTGTTTACCACTCAATGATCTACACCACATTTTTCAAATTTAAAAATAATTTTTT
* *
23838018 GAGTGTTTGTCACCTAATGACTTACAC
66 AAGTGTTTGTCACCTAATGACCTACAC
23838045 CACTTTTCCT
Statistics
Matches: 83, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
91 52 0.63
92 29 0.35
93 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.11, T:0.44
Consensus pattern (92 bp):
TATTTTTTGGGTGTTTACCACTCAATGATCTACACCACATTTTTCAAATTTAAAAATAATTTTTT
AAGTGTTTGTCACCTAATGACCTACAC
Found at i:23837967 original size:35 final size:35
Alignment explanation
Indices: 23837918--23837987 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
23837908 AATTTAAAAA
*
23837918 TATTTTTTAAGTGTTTGTCACTCAATGACCTACAC
1 TATTTTTTAAGTGTTTGCCACTCAATGACCTACAC
** *
23837953 TATTTTTTGGGTGTTTGCCACTCAATGATCTACAC
1 TATTTTTTAAGTGTTTGCCACTCAATGACCTACAC
23837988 CACATTTTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.43
Consensus pattern (35 bp):
TATTTTTTAAGTGTTTGCCACTCAATGACCTACAC
Found at i:23838044 original size:57 final size:56
Alignment explanation
Indices: 23837954--23838138 Score: 223
Period size: 57 Copynumber: 3.3 Consensus size: 56
23837944 GACCTACACT
* *
23837954 ATTTTTTGGGTGTTTGCCACTCAATGA-TCTACACCACATTTTTCAAATTTAAAAATA
1 ATTTTTTGAGTGTTTGTCACTCAATGACT-TACACCAC-TTTTTCAAATTTAAAAATA
* *
23838011 ATTTTTTGAGTGTTTGTCAC-CTAATGACTTACACCACTTTTCCTAGATTTAAAAAT-
1 ATTTTTTGAGTGTTTGTCACTC-AATGACTTACACCACTTTTTC-AAATTTAAAAATA
* * *
23838067 ATTTTTTAAGTGTTTGTCACTCAATGACCTACACCATTTTTTTCAAATTTAAAAATA
1 ATTTTTTGAGTGTTTGTCACTCAATGACTTACACCA-CTTTTTCAAATTTAAAAATA
* *
23838124 TTTTTTTGGGTGTTT
1 ATTTTTTGAGTGTTT
23838139 ACCAGCCAAC
Statistics
Matches: 110, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
56 49 0.45
57 60 0.55
58 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.11, T:0.45
Consensus pattern (56 bp):
ATTTTTTGAGTGTTTGTCACTCAATGACTTACACCACTTTTTCAAATTTAAAAATA
Found at i:23838082 original size:148 final size:147
Alignment explanation
Indices: 23837808--23838108 Score: 426
Period size: 148 Copynumber: 2.0 Consensus size: 147
23837798 AAAAAAATAT
* * * * *
23837808 TTTTTTGGGTGTTTGCCACCCAATGGCCTTCACCACTTTTTTCAGATTTAAAAATATTTTTTGGG
1 TTTTTTGGGTGTTTGCCACCCAATGACCTACACCACATTTTTCAAATTTAAAAATATTTTTTGAG
* * * *
23837873 TGTTTACCATTCTATGATTTACATCACATTTTTCAAATTTAAAAATATTTTTTAAGTGTTTGTCA
66 TGTTTACCATCCTATGACTTACACCACATTTTCCAAATTTAAAAATATTTTTTAAGTGTTTGTCA
*
23837938 CTCAATGACCTACACTA
131 CTCAATGACCTACACCA
* *
23837955 TTTTTTGGGTGTTTGCCACTCAATGATCTACACCACATTTTTCAAATTTAAAAATAATTTTTTGA
1 TTTTTTGGGTGTTTGCCACCCAATGACCTACACCACATTTTTCAAATTTAAAAAT-ATTTTTTGA
** *
23838020 GTGTTTGTCA-CCTAATGACTTACACCAC-TTTTCCTAGATTTAAAAATATTTTTTAAGTGTTTG
65 GTGTTTACCATCCT-ATGACTTACACCACATTTTCC-AAATTTAAAAATATTTTTTAAGTGTTTG
23838083 TCACTCAATGACCTACACCA
128 TCACTCAATGACCTACACCA
23838103 TTTTTT
1 TTTTTT
23838109 TCAAATTTAA
Statistics
Matches: 136, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
147 56 0.41
148 80 0.59
ACGTcount: A:0.27, C:0.18, G:0.11, T:0.44
Consensus pattern (147 bp):
TTTTTTGGGTGTTTGCCACCCAATGACCTACACCACATTTTTCAAATTTAAAAATATTTTTTGAG
TGTTTACCATCCTATGACTTACACCACATTTTCCAAATTTAAAAATATTTTTTAAGTGTTTGTCA
CTCAATGACCTACACCA
Found at i:23838157 original size:113 final size:113
Alignment explanation
Indices: 23837953--23838177 Score: 299
Period size: 113 Copynumber: 2.0 Consensus size: 113
23837943 TGACCTACAC
** *
23837953 TATTTTTTGGGTGTTTGCCACTCAATGATCTACACCACATTTTTCAAATTTAAAAATAATTTTTT
1 TATTTTTTAAGTGTTTGCCACTCAATGACCTACACCACATTTTTCAAATTTAAAAATAATTTTTT
** * * * * *
23838018 GAGTGTTTGTCACCTAATGACTTACACCACTTTTCCTAGATTTAAAAA
66 GAGTGTTTACCACCTAACGACCTACACCACCTGTCCCAGATTTAAAAA
* ** *
23838066 TATTTTTTAAGTGTTTGTCACTCAATGACCTACACCATTTTTTTCAAATTTAAAAATATTTTTTT
1 TATTTTTTAAGTGTTTGCCACTCAATGACCTACACCACATTTTTCAAATTTAAAAATAATTTTTT
*
23838131 GGGTGTTTACCAGCC-AACGACCTACACCACCTGTCCCAGATTTAAAA
66 GAGTGTTTACCA-CCTAACGACCTACACCACCTGTCCCAGATTTAAAA
23838178 TTTTAAAATT
Statistics
Matches: 96, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
113 94 0.98
114 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.40
Consensus pattern (113 bp):
TATTTTTTAAGTGTTTGCCACTCAATGACCTACACCACATTTTTCAAATTTAAAAATAATTTTTT
GAGTGTTTACCACCTAACGACCTACACCACCTGTCCCAGATTTAAAAA
Found at i:23838174 original size:57 final size:56
Alignment explanation
Indices: 23837953--23838177 Score: 222
Period size: 57 Copynumber: 4.0 Consensus size: 56
23837943 TGACCTACAC
* * *
23837953 TATTTTTTGGGTGTTTGCCACTCAATGATCTACACCACATTTT-TCAAATTTAAAAA
1 TATTTTTTGAGTGTTTGCCACTCAATGACCTACACCAC-TTTTCCCAAATTTAAAAA
* * * *
23838009 TAATTTTTTGAGTGTTTGTCAC-CTAATGACTTACACCACTTTTCCTAGATTTAAAAA
1 T-ATTTTTTGAGTGTTTGCCACTC-AATGACCTACACCACTTTTCCCAAATTTAAAAA
* * * **
23838066 TATTTTTTAAGTGTTTGTCACTCAATGACCTACACCATTTTTTTCAAATTTAAAAA
1 TATTTTTTGAGTGTTTGCCACTCAATGACCTACACCACTTTTCCCAAATTTAAAAA
* * * * * *
23838122 TATTTTTTTGGGTGTTTACCAGC-CAACGACCTACACCACCTGTCCCAGATTTAAAA
1 TA-TTTTTTGAGTGTTTGCCA-CTCAATGACCTACACCACTTTTCCCAAATTTAAAA
23838178 TTTTAAAATT
Statistics
Matches: 138, Mismatches: 25, Indels: 11
0.79 0.14 0.06
Matches are distributed among these distances:
56 54 0.39
57 83 0.60
58 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.40
Consensus pattern (56 bp):
TATTTTTTGAGTGTTTGCCACTCAATGACCTACACCACTTTTCCCAAATTTAAAAA
Found at i:23838439 original size:56 final size:57
Alignment explanation
Indices: 23838368--23838534 Score: 189
Period size: 57 Copynumber: 2.9 Consensus size: 57
23838358 AAAAAATTAT
* * *
23838368 ATTTGAAAAAAGTGGTGTAAGTTATTAGG-TGACAAATA-TAAAAAAAATATTTTTAA
1 ATTTGAGAAAGGTGGTGTAAGTTATT-GGATGACAAACACTAAAAAAAATATTTTTAA
* *
23838424 ATTTGTGAAAGGTGGTGTAAGTTATTGGATGACAAACACTTAAAAAAATATTTTTAA
1 ATTTGAGAAAGGTGGTGTAAGTTATTGGATGACAAACACTAAAAAAAATATTTTTAA
* * * * *
23838481 ATTTGAGAAAGGTGATATAAGTCATTGGGT-AGCAAACACCCAAAAAAAA-ATTTT
1 ATTTGAGAAAGGTGGTGTAAGTTATTGGATGA-CAAACA-CTAAAAAAAATATTTT
23838535 ATTCGTATTT
Statistics
Matches: 95, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
55 2 0.02
56 32 0.34
57 53 0.56
58 8 0.08
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.32
Consensus pattern (57 bp):
ATTTGAGAAAGGTGGTGTAAGTTATTGGATGACAAACACTAAAAAAAATATTTTTAA
Found at i:23838659 original size:21 final size:21
Alignment explanation
Indices: 23838633--23838672 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
23838623 TTGATAGACA
23838633 TAAAAAAAT-TATTTTTTAATG
1 TAAAAAAATGT-TTTTTTAATG
23838654 TAAAAAAATGTTTTTTTAA
1 TAAAAAAATGTTTTTTTAA
23838673 ATCTCATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (21 bp):
TAAAAAAATGTTTTTTTAATG
Found at i:23843588 original size:20 final size:20
Alignment explanation
Indices: 23843563--23843608 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
23843553 TTGAATAGAT
*
23843563 TTTTAATTAAGTTAAAA-TA
1 TTTTAATCAAGTTAAAACTA
*
23843582 GTTTTAATCGAGTTAAAACTA
1 -TTTTAATCAAGTTAAAACTA
23843603 TTTTAA
1 TTTTAA
23843609 AACAAGATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.46
Consensus pattern (20 bp):
TTTTAATCAAGTTAAAACTA
Found at i:23846949 original size:23 final size:23
Alignment explanation
Indices: 23846901--23846950 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
23846891 AGGAACTTGA
* *
23846901 TTTTTCTTTCTTTCGTTTCTTTT
1 TTTTTCTTTCTCTCGTTTCTTCT
23846924 TTTTTCTTTCTCT-GTTTACTTCT
1 TTTTTCTTTCTCTCGTTT-CTTCT
23846947 TTTT
1 TTTT
23846951 ACTGACATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.76
Consensus pattern (23 bp):
TTTTTCTTTCTCTCGTTTCTTCT
Found at i:23852169 original size:20 final size:21
Alignment explanation
Indices: 23852126--23852169 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
23852116 AAATCTCCTC
*
23852126 AAAATAATATTTTTCACTTTATA
1 AAAATAATATTTTT--CTTGATA
23852149 AAAATAATATTTTT-TTGATA
1 AAAATAATATTTTTCTTGATA
23852169 A
1 A
23852170 TTTCATTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 6 0.30
23 14 0.70
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (21 bp):
AAAATAATATTTTTCTTGATA
Found at i:23852837 original size:20 final size:21
Alignment explanation
Indices: 23852812--23852850 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
23852802 TCTTTTTCTT
23852812 TTTTAA-AATAATAT-TAAAAG
1 TTTTAAGAA-AATATGTAAAAG
23852832 TTTTAAGAAAATATGTAAA
1 TTTTAAGAAAATATGTAAA
23852851 TAAAAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (21 bp):
TTTTAAGAAAATATGTAAAAG
Found at i:23854353 original size:18 final size:17
Alignment explanation
Indices: 23854330--23854373 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
23854320 AAAACATATT
*
23854330 TCATTAATGATTTTAATC
1 TCATTAATG-CTTTAATC
*
23854348 TCATTACTGCTTTAATC
1 TCATTAATGCTTTAATC
23854365 TCACTTAAT
1 TCA-TTAAT
23854374 TAAAGCATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.48
Consensus pattern (17 bp):
TCATTAATGCTTTAATC
Found at i:23867974 original size:32 final size:32
Alignment explanation
Indices: 23867938--23868006 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
23867928 AGAAAAATTA
*
23867938 AATTTAAAAAGAAA-AATTCAATTTATATATTT
1 AATTT-AAAAGAAATAATTCAATTTATATATTC
***
23867970 AATTTTGTAGAAATAATTCAATTTATATATTC
1 AATTTAAAAGAAATAATTCAATTTATATATTC
23868002 AATTT
1 AATTT
23868007 CAATACCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 5 0.16
32 27 0.84
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.45
Consensus pattern (32 bp):
AATTTAAAAGAAATAATTCAATTTATATATTC
Found at i:23874534 original size:14 final size:14
Alignment explanation
Indices: 23874515--23874562 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
23874505 AAGTGAAAAA
23874515 ATAATATAAATTTT
1 ATAATATAAATTTT
*
23874529 ATAATATATAACCTTT
1 ATAATATA-AA-TTTT
23874545 ATAA-ATAAAATTTT
1 ATAATAT-AAATTTT
23874559 ATAA
1 ATAA
23874563 ATTGTCCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 15 0.52
15 6 0.21
16 8 0.28
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (14 bp):
ATAATATAAATTTT
Found at i:23874563 original size:14 final size:15
Alignment explanation
Indices: 23874517--23874564 Score: 62
Period size: 16 Copynumber: 3.2 Consensus size: 15
23874507 GTGAAAAAAT
23874517 AATATAAATTTTATA
1 AATATAAATTTTATA
**
23874532 ATATATAACCTTTATA
1 A-ATATAAATTTTATA
23874548 AATA-AAATTTTATA
1 AATATAAATTTTATA
23874562 AAT
1 AAT
23874565 TGTCCCAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 11 0.39
15 4 0.14
16 13 0.46
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (15 bp):
AATATAAATTTTATA
Found at i:23878211 original size:3 final size:3
Alignment explanation
Indices: 23878203--23878250 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
23878193 TTATACACAC
23878203 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
23878251 TTAAGACAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:23893624 original size:22 final size:22
Alignment explanation
Indices: 23893589--23893637 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
23893579 TATTTTCATG
*
23893589 ATTTTTTTACTGTTTTGCT-GTT
1 ATTTTCTTACTGTTTT-CTCGTT
*
23893611 ATTTTCTTATTGTTTTCTCGTT
1 ATTTTCTTACTGTTTTCTCGTT
23893633 ATTTT
1 ATTTT
23893638 GCTACCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.69
Consensus pattern (22 bp):
ATTTTCTTACTGTTTTCTCGTT
Found at i:23893656 original size:22 final size:22
Alignment explanation
Indices: 23893631--23893678 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
23893621 TGTTTTCTCG
* *
23893631 TTATTTTGCTACCATTTTATTA
1 TTATGTTGCTACCATTCTATTA
* *
23893653 TTATGTTGCTACTATTCTATTG
1 TTATGTTGCTACCATTCTATTA
23893675 TTAT
1 TTAT
23893679 CATTTGGATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.21, C:0.12, G:0.08, T:0.58
Consensus pattern (22 bp):
TTATGTTGCTACCATTCTATTA
Found at i:23894535 original size:26 final size:26
Alignment explanation
Indices: 23894506--23894555 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
23894496 GTTTTCATCG
* *
23894506 AATAAATA-AATTTATAATTTAAAATT
1 AATAAAAAGAATTT-TAATATAAAATT
23894532 AATAAAAAGAATTTTAATATAAAA
1 AATAAAAAGAATTTTAATATAAAA
23894556 ATAAAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
AATAAAAAGAATTTTAATATAAAATT
Found at i:23901468 original size:2 final size:2
Alignment explanation
Indices: 23901461--23901487 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
23901451 CTAAATTGTG
23901461 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
23901488 TTTAATTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:23901888 original size:24 final size:23
Alignment explanation
Indices: 23901833--23901888 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
23901823 TAATTTAATG
23901833 AATTTAATAATTATCAATTAAAAA
1 AATTTAA-AATTATCAATTAAAAA
* ** *
23901857 GAGATAAAATTTTCAAATTAAAAA
1 AATTTAAAATTATC-AATTAAAAA
23901881 AATTTAAA
1 AATTTAAA
23901889 GACTAAAAAT
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.34
Consensus pattern (23 bp):
AATTTAAAATTATCAATTAAAAA
Found at i:23902116 original size:17 final size:16
Alignment explanation
Indices: 23902086--23902123 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
23902076 ATTTATTTTT
23902086 TAAAATTTTTAAAT-A
1 TAAAATTTTTAAATAA
23902101 TAAAGATTTATTAAATAA
1 TAAA-ATTT-TTAAATAA
23902119 TAAAA
1 TAAAA
23902124 AATAAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 4 0.20
16 4 0.20
17 7 0.35
18 5 0.25
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
TAAAATTTTTAAATAA
Found at i:23902754 original size:30 final size:30
Alignment explanation
Indices: 23902718--23902814 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
23902708 ATATTCTATC
*
23902718 AATTTAATTTTAAATATAAAAAAATTAATA
1 AATTTAATTTTAAATATTAAAAAATTAATA
* * * * *
23902748 AATTTAATCTTCAATATTTACAAAATTTATC
1 AATTTAATTTTAAATA-TTAAAAAATTAATA
* * *
23902779 ATTTTAA-TTTAAATTTTAAAAAATAAATA
1 AATTTAATTTTAAATATTAAAAAATTAATA
23902808 AATTTAA
1 AATTTAA
23902815 CTTGAATGTA
Statistics
Matches: 51, Mismatches: 15, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
29 16 0.31
30 19 0.37
31 16 0.31
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (30 bp):
AATTTAATTTTAAATATTAAAAAATTAATA
Found at i:23902769 original size:61 final size:60
Alignment explanation
Indices: 23902682--23902816 Score: 166
Period size: 60 Copynumber: 2.2 Consensus size: 60
23902672 ATTGGTCTAA
*
23902682 TAATAAATTTAACTCTCCAATGTTAC-ATATTCTATCAATTTAATTTTAAATATAAAAAAAT
1 TAATAAATTTAACTCTCCAATGTTACAAAATT-TATCAATTTAA-TTTAAATATAAAAAAAT
* * * * *
23902743 TAATAAATTTAA-TCTTCAATATTTACAAAATTTATCATTTTAATTTAAATTTTAAAAAAT
1 TAATAAATTTAACTCTCCAAT-GTTACAAAATTTATCAATTTAATTTAAATATAAAAAAAT
*
23902803 AAATAAATTTAACT
1 TAATAAATTTAACT
23902817 TGAATGTAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
60 33 0.52
61 27 0.42
62 4 0.06
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (60 bp):
TAATAAATTTAACTCTCCAATGTTACAAAATTTATCAATTTAATTTAAATATAAAAAAAT
Found at i:23909778 original size:69 final size:69
Alignment explanation
Indices: 23909666--23909802 Score: 238
Period size: 69 Copynumber: 2.0 Consensus size: 69
23909656 CAATGAAAAA
* *
23909666 CTTGGTTGAATTGGTGAAAAGCCGAAAAAAGAGGGTTTACACTGCTTTTTTTATGAGTAAATTAC
1 CTTGGTTGAATTGGTGAAAAACCGAAAAAAGAGGGTTTACACTGCTTTTTTTAAGAGTAAATTAC
23909731 ACTG
66 ACTG
* *
23909735 CTTGGTTGAATTGGTGAAAAACCTAAAAAAGAGGGTTTCCACTGCTTTTTTTAAGAGTAAATTAC
1 CTTGGTTGAATTGGTGAAAAACCGAAAAAAGAGGGTTTACACTGCTTTTTTTAAGAGTAAATTAC
23909800 ACT
66 ACT
23909803 CAAAGTCACT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (69 bp):
CTTGGTTGAATTGGTGAAAAACCGAAAAAAGAGGGTTTACACTGCTTTTTTTAAGAGTAAATTAC
ACTG
Found at i:23910514 original size:31 final size:31
Alignment explanation
Indices: 23910479--23910544 Score: 73
Period size: 31 Copynumber: 2.1 Consensus size: 31
23910469 ACTTAACTAA
*
23910479 AAAAAGTTACAATTTGA-TCAC-TAAACTATTC
1 AAAAAGTTAC-ATTTAAGTC-CTTAAACTATTC
* *
23910510 AAAAATTTTCATTTAAGTCCTTAAACTATTC
1 AAAAAGTTACATTTAAGTCCTTAAACTATTC
23910541 AAAA
1 AAAA
23910545 GTTCTTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
30 6 0.20
31 24 0.80
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (31 bp):
AAAAAGTTACATTTAAGTCCTTAAACTATTC
Found at i:23910555 original size:31 final size:31
Alignment explanation
Indices: 23910500--23910559 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
23910490 ATTTGATCAC
23910500 TAAACTATTCAAAAATTTTCATTTAAGTCCT
1 TAAACTATTCAAAAATTTTCATTTAAGTCCT
*
23910531 TAAACTATTCAAAAGTTCTT-ATTTAAGTC
1 TAAACTATTCAAAAATT-TTCATTTAAGTC
23910560 ATTGGGTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.42
Consensus pattern (31 bp):
TAAACTATTCAAAAATTTTCATTTAAGTCCT
Found at i:23918807 original size:19 final size:19
Alignment explanation
Indices: 23918785--23918821 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23918775 TTTAAATGAT
23918785 TTTTGGGTAAAAATAAATA
1 TTTTGGGTAAAAATAAATA
* *
23918804 TTTTGGGTCAAATTAAAT
1 TTTTGGGTAAAAATAAAT
23918822 TTGAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.16, T:0.41
Consensus pattern (19 bp):
TTTTGGGTAAAAATAAATA
Found at i:23939922 original size:23 final size:22
Alignment explanation
Indices: 23939896--23939939 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
23939886 GCCGCTTAAT
23939896 TTATTCATTTTTTTACCTTAGGC
1 TTATTCA-TTTTTTACCTTAGGC
* *
23939919 TTATTTATTTTTTATCTTAGG
1 TTATTCATTTTTTACCTTAGG
23939940 AAAGACGGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.61
Consensus pattern (22 bp):
TTATTCATTTTTTACCTTAGGC
Found at i:23946531 original size:2 final size:2
Alignment explanation
Indices: 23946524--23946569 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
23946514 TGATTTGATA
23946524 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23946566 AT AT
1 AT AT
23946570 TTAACAAACT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23961107 original size:6 final size:6
Alignment explanation
Indices: 23961096--23961126 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
23961086 TAAATCCATG
*
23961096 AACACC AACACC AACACC AACACC TACACC A
1 AACACC AACACC AACACC AACACC AACACC A
23961127 TGGAAGTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.48, G:0.00, T:0.03
Consensus pattern (6 bp):
AACACC
Found at i:23969332 original size:20 final size:20
Alignment explanation
Indices: 23969295--23969333 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
23969285 TATTTTAATC
* *
23969295 ATTTAATTATTAATTTTTTA
1 ATTTAATCATTAAGTTTTTA
*
23969315 ATTTAATCATTTAGTTTTT
1 ATTTAATCATTAAGTTTTT
23969334 TGAAATTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (20 bp):
ATTTAATCATTAAGTTTTTA
Found at i:23970232 original size:21 final size:20
Alignment explanation
Indices: 23970208--23970247 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
23970198 CGTTACCCGC
23970208 TCACTATTATTTCATCATTTA
1 TCACTATTATTTCA-CATTTA
* *
23970229 TCACTTTTCTTTCACATTT
1 TCACTATTATTTCACATTT
23970248 TTCTTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (20 bp):
TCACTATTATTTCACATTTA
Found at i:23980680 original size:14 final size:14
Alignment explanation
Indices: 23980663--23980692 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23980653 TTGCTATTTG
*
23980663 AATTTTTTAGAAAT
1 AATTTTTTAAAAAT
23980677 AATTTTTTAAAAAT
1 AATTTTTTAAAAAT
23980691 AA
1 AA
23980693 AAAATTATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
AATTTTTTAAAAAT
Found at i:23988848 original size:7 final size:7
Alignment explanation
Indices: 23988836--23988864 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
23988826 TAGACAATTC
23988836 GTAGGTG
1 GTAGGTG
23988843 GTAGGTG
1 GTAGGTG
23988850 GTAGGTG
1 GTAGGTG
23988857 GTAGGTG
1 GTAGGTG
23988864 G
1 G
23988865 AGTCCATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.59, T:0.28
Consensus pattern (7 bp):
GTAGGTG
Found at i:23993168 original size:6 final size:6
Alignment explanation
Indices: 23993157--23993194 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
23993147 CCAGGAGATG
* *
23993157 GATTTA GATTTA GATTCA GATTTA GATTCA GATTTA GA
1 GATTTA GATTTA GATTTA GATTTA GATTTA GATTTA GA
23993195 ATTTTGGCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.42
Consensus pattern (6 bp):
GATTTA
Found at i:23993172 original size:12 final size:12
Alignment explanation
Indices: 23993157--23993194 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
23993147 CCAGGAGATG
*
23993157 GATTTAGATTTA
1 GATTCAGATTTA
23993169 GATTCAGATTTA
1 GATTCAGATTTA
23993181 GATTCAGATTTA
1 GATTCAGATTTA
23993193 GA
1 GA
23993195 ATTTTGGCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.42
Consensus pattern (12 bp):
GATTCAGATTTA
Found at i:23993217 original size:19 final size:19
Alignment explanation
Indices: 23993195--23993233 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
23993185 CAGATTTAGA
* *
23993195 ATTTTGGCTTTGAATTTGG
1 ATTTTGACTTTGAAATTGG
*
23993214 ATTTTGATTTTGAAATTGG
1 ATTTTGACTTTGAAATTGG
23993233 A
1 A
23993234 GATAACGAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.23, T:0.51
Consensus pattern (19 bp):
ATTTTGACTTTGAAATTGG
Found at i:24000232 original size:31 final size:31
Alignment explanation
Indices: 24000197--24000265 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 31
24000187 TACAATTTGG
24000197 TCACTGAACTATTCGAAAAT-TTTCT-TTTAAA
1 TCACTGAACTATTC-AAAATATTT-TATTTAAA
* *
24000228 TCACTAAACTATTCAAAATATTTTATTTAAG
1 TCACTGAACTATTCAAAATATTTTATTTAAA
24000259 TCACTGA
1 TCACTGA
24000266 GCTGTTACAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 6 0.18
31 27 0.82
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.41
Consensus pattern (31 bp):
TCACTGAACTATTCAAAATATTTTATTTAAA
Found at i:24001383 original size:29 final size:29
Alignment explanation
Indices: 24001303--24001382 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
24001293 CTATCAAAAC
* * *
24001303 TATATATGAACTATGATTTATTGTTCAATTG
1 TATACATGAACTTTGA-TT-TTGTGCAATTG
*
24001334 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATGAACTTTGATTTTGTGCAATTG
*
24001363 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
24001383 GATCCAATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 17 0.40
30 12 0.28
31 14 0.33
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.49
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTGTGCAATTG
Found at i:24001391 original size:30 final size:29
Alignment explanation
Indices: 24001303--24001391 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 29
24001293 CTATCAAAAC
* * *
24001303 TATATATGAACTATGATTTATTGTTCAATTG
1 TATACATGAACTTTGA-TT-TTGTCCAATTG
* *
24001334 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATGAACTTTGATTTTGTCCAATTG
*
24001363 TATACATGAAATTTTGA-TTTGATCCAATT
1 TATACATG-AACTTTGATTTTG-TCCAATT
24001392 CCTGTAAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 21 0.42
30 15 0.30
31 14 0.28
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.47
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTGTCCAATTG
Found at i:24007897 original size:20 final size:21
Alignment explanation
Indices: 24007872--24007913 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
24007862 AAAAGTCTCC
* *
24007872 ATATCATATCAT-TCCATTTT
1 ATATCACATCATATCAATTTT
24007892 ATATCACATCATATCAATTTT
1 ATATCACATCATATCAATTTT
24007913 A
1 A
24007914 ACTTAAAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.36, C:0.19, G:0.00, T:0.45
Consensus pattern (21 bp):
ATATCACATCATATCAATTTT
Done.