Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 75 of 171
Found at i:26034259 original size:147 final size:147
Alignment explanation
Indices: 26033992--26034271 Score: 341
Period size: 148 Copynumber: 1.9 Consensus size: 147
26033982 CGGTGAATCT
* * * *
26033992 TACACCCTAAAATTGAAAAGGAAAAGATTAAAGCTGCAATGGTGAACCTTACACCCTAAAATTAA
1 TACACCCTAAAATTAAAAAGGAAAAGATTAAAGCTGCAATGATAAACCTTACACCCTAAAACTAA
* ** **
26034057 AGAGGCACAGATTAAAGTCATAACGGTGAATCTTACACCCTAAAACTGAAGAGAGATAGATTAAA
66 AAAGGCACAGATTAAAGTCATAACGGCAAATCTTACACCCTAAAACCCAAGAGAGATAGATTAAA
26034122 GTCGTAACAACGAATAC
131 GTCGTAACAACGAATAC
* *
26034139 TACACCCTAAAATTAAAAA-GAGACAGATTAAAG-TCGCAATGATAAATCTTACACCCCTAAAAC
1 TACACCCTAAAATTAAAAAGGA-AAAGATTAAAGCT-GCAATGATAAACCTTACA-CCCTAAAAC
* * * * * *
26034202 TAAAAAGGGACAGGTTAAAG-CTGTAATGGCAAATCTTACACCCTTAAACCCAAAGAGAGATAGT
63 TAAAAAGGCACAGATTAAAGTC-ATAACGGCAAATCTTACACCCTAAAACCC-AAGAGAGATAGA
26034266 TTAAAG
126 TTAAAG
26034272 CCGCAAAGGT
Statistics
Matches: 111, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
146 3 0.03
147 44 0.40
148 47 0.42
149 17 0.15
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (147 bp):
TACACCCTAAAATTAAAAAGGAAAAGATTAAAGCTGCAATGATAAACCTTACACCCTAAAACTAA
AAAGGCACAGATTAAAGTCATAACGGCAAATCTTACACCCTAAAACCCAAGAGAGATAGATTAAA
GTCGTAACAACGAATAC
Found at i:26035149 original size:14 final size:13
Alignment explanation
Indices: 26035130--26035170 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 13
26035120 TGGCATTTAA
26035130 TTTATTTATTTTT
1 TTTATTTATTTTT
26035143 GTTTATTTATTTAGTT
1 -TTTATTTATTT--TT
26035159 TTTATTTATTTT
1 TTTATTTATTTT
26035171 CATGCCTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 1 0.04
14 11 0.44
15 11 0.44
16 2 0.08
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (13 bp):
TTTATTTATTTTT
Found at i:26035152 original size:18 final size:19
Alignment explanation
Indices: 26035124--26035169 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
26035114 TTATTTTGGC
26035124 ATTTAATTTATTTA-TTTTT
1 ATTT-ATTTATTTAGTTTTT
*
26035143 GTTTATTTATTTAGTTTTT
1 ATTTATTTATTTAGTTTTT
26035162 ATTTATTT
1 ATTTATTT
26035170 TCATGCCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (19 bp):
ATTTATTTATTTAGTTTTT
Found at i:26035164 original size:11 final size:10
Alignment explanation
Indices: 26035130--26035170 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
26035120 TGGCATTTAA
26035130 TTTATTTATT
1 TTTATTTATT
*
26035140 TTTGTTTA--
1 TTTATTTATT
26035148 TTTATTTAGTT
1 TTTATTTA-TT
26035159 TTTATTTATT
1 TTTATTTATT
26035169 TT
1 TT
26035171 CATGCCTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
8 7 0.27
10 11 0.42
11 8 0.31
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (10 bp):
TTTATTTATT
Found at i:26039177 original size:5 final size:5
Alignment explanation
Indices: 26039169--26039383 Score: 98
Period size: 5 Copynumber: 41.4 Consensus size: 5
26039159 CATATAATAT
** * *
26039169 AAAGC AAAGC AAAGC AATATAA AAAGC AAAGC AAATC AAAGC AATA-T
1 AAAGC AAAGC AAAGC AA-A-GC AAAGC AAAGC AAAGC AAAGC AA-AGC
* * **
26039216 AAAGC AAAGA AAAGC ATAGC ACAA-C AATATAA AAAGC ACAA-C AAAGC
1 AAAGC AAAGC AAAGC AAAGC A-AAGC AA-A-GC AAAGC A-AAGC AAAGC
* * * *
26039263 AATATC AAAGC AATGC TAAA-C AAAGT AAAGC ACAA-C AAAGC AAAGT
1 AA-AGC AAAGC AAAGC -AAAGC AAAGC AAAGC A-AAGC AAAGC AAAGC
** ** *
26039309 AAAGC AATATAA AAAGC AAAGC AAAGC AATATA AAAGC AAAGC AAAGA
1 AAAGC AA-A-GC AAAGC AAAGC AAAGC AA-AGC AAAGC AAAGC AAAGC
* * *
26039357 AAAAC AAACC AAAGC ACAGC AAAGC AA
1 AAAGC AAAGC AAAGC AAAGC AAAGC AA
26039384 CATGTTGAAA
Statistics
Matches: 154, Mismatches: 38, Indels: 36
0.68 0.17 0.16
Matches are distributed among these distances:
4 9 0.06
5 119 0.77
6 20 0.13
7 6 0.04
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.08
Consensus pattern (5 bp):
AAAGC
Found at i:26039346 original size:21 final size:22
Alignment explanation
Indices: 26039299--26039355 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
26039289 AAAGCACAAC
*
26039299 AAAGCAAAGTAAAGCAATATAA
1 AAAGCAAAGCAAAGCAATATAA
26039321 AAAGCAAAGCAAAGCAATAT-A
1 AAAGCAAAGCAAAGCAATATAA
26039342 AAAGCAAAGCAAAG
1 AAAGCAAAGCAAAG
26039356 AAAAACAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 15 0.44
22 19 0.56
ACGTcount: A:0.63, C:0.12, G:0.16, T:0.09
Consensus pattern (22 bp):
AAAGCAAAGCAAAGCAATATAA
Found at i:26039378 original size:73 final size:74
Alignment explanation
Indices: 26039169--26039380 Score: 209
Period size: 73 Copynumber: 2.8 Consensus size: 74
26039159 CATATAATAT
* *
26039169 AAAGCAAAGCAAAGCAATATAAAAAGCAAAGCAAATCAAAGCAATATAAAGCAAAGAAAAGCATA
1 AAAGCAAAGCAAAGCAATAT-AAAAGCAAAGCAAA-CAAAGCAA-ACAAAGCAAAGCAAAG-ATA
26039234 GCACAACAATATAA
62 -CACAACAATATAA
* * *
26039248 AAAGCACAA-CAAAGCAATATCAAAGCAATGCTAAACAAAGTAAAGCACAA-CAAAGCAAAG-TA
1 AAAGCA-AAGCAAAGCAATATAAAAGCAAAGC-AAACAAAGCAAA-CA-AAGCAAAGCAAAGATA
*
26039310 -A-AGCAATATAA
62 CACAACAATATAA
* * *
26039321 AAAGCAAAGCAAAGCAATATAAAAGCAAAGCAAAGAAAAACAAACCAAAGCACAGCAAAG
1 AAAGCAAAGCAAAGCAATATAAAAGCAAAGCAAA-CAAAGCAAA-CAAAGCAAAGCAAAG
26039381 CAACATGTTG
Statistics
Matches: 113, Mismatches: 13, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
72 7 0.06
73 52 0.46
74 1 0.01
76 2 0.02
77 1 0.01
78 26 0.23
79 22 0.19
80 2 0.02
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.08
Consensus pattern (74 bp):
AAAGCAAAGCAAAGCAATATAAAAGCAAAGCAAACAAAGCAAACAAAGCAAAGCAAAGATACACA
ACAATATAA
Found at i:26040147 original size:56 final size:55
Alignment explanation
Indices: 26040067--26040299 Score: 245
Period size: 55 Copynumber: 4.2 Consensus size: 55
26040057 TGTTTTTCGA
* *
26040067 AGGCACACGGGCTGGCATATGGGGGTGTGACCAGGGTGTGTGTCTATACTGTTTGG
1 AGGCACACGGGCTGGCATACGGGCGTGTG-CCAGGGTGTGTGTCTATACTGTTTGG
* * * *
26040123 AGGCACACGGGCTGGCATACGGGGGTGTGTTCAAGGG-GTGTGTCTATACTGCTTAG
1 AGGCACACGGGCTGGCATACGGGCGTGTG--CCAGGGTGTGTGTCTATACTGTTTGG
* * ** * **
26040179 AGGCACAC-GGTTGGCACACAAGCGTGTGTCAGGGTGTGTGTCTATACTAATTGG
1 AGGCACACGGGCTGGCATACGGGCGTGTGCCAGGGTGTGTGTCTATACTGTTTGG
** * * * *
26040233 AGGCACATAGGCTGGCAAACGGGCGTGTGTCAGGGTATGTGTTTATACTGTTTGG
1 AGGCACACGGGCTGGCATACGGGCGTGTGCCAGGGTGTGTGTCTATACTGTTTGG
*
26040288 ATGCACACGGGC
1 AGGCACACGGGC
26040300 GTGGGTCAAG
Statistics
Matches: 147, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
53 4 0.03
54 23 0.16
55 62 0.42
56 53 0.36
57 5 0.03
ACGTcount: A:0.19, C:0.18, G:0.37, T:0.26
Consensus pattern (55 bp):
AGGCACACGGGCTGGCATACGGGCGTGTGCCAGGGTGTGTGTCTATACTGTTTGG
Found at i:26040262 original size:110 final size:109
Alignment explanation
Indices: 26040098--26040297 Score: 276
Period size: 110 Copynumber: 1.8 Consensus size: 109
26040088 GGGGTGTGAC
** * * * *
26040098 CAGGGTGTGTGTCTATACTGTTTGGAGGCACACGGGCTGGCATACGGGGGTGTGTTCAAGGG-GT
1 CAGGGTGTGTGTCTATACTAATTGGAGGCACACAGGCTGGCAAACGGGCGTGTG-TC-AGGGTAT
26040162 GTGTCTATACTGCTTAGAGGCACACGGTTGGCACACAAGCGTGTGT
64 GTGTCTATACTGCTTAGAGGCACACGGTTGGCACACAAGCGTGTGT
*
26040208 CAGGGTGTGTGTCTATACTAATTGGAGGCACATAGGCTGGCAAACGGGCGTGTGTCAGGGTATGT
1 CAGGGTGTGTGTCTATACTAATTGGAGGCACACAGGCTGGCAAACGGGCGTGTGTCAGGGTATGT
* * * *
26040273 GTTTATACTGTTTGGATGCACACGG
66 GTCTATACTGCTTAGAGGCACACGG
26040298 GCGTGGGTCA
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
108 4 0.05
109 26 0.33
110 48 0.62
ACGTcount: A:0.20, C:0.17, G:0.36, T:0.28
Consensus pattern (109 bp):
CAGGGTGTGTGTCTATACTAATTGGAGGCACACAGGCTGGCAAACGGGCGTGTGTCAGGGTATGT
GTCTATACTGCTTAGAGGCACACGGTTGGCACACAAGCGTGTGT
Found at i:26043280 original size:56 final size:56
Alignment explanation
Indices: 26043214--26043319 Score: 167
Period size: 56 Copynumber: 1.9 Consensus size: 56
26043204 AAGGGCTGGC
* **
26043214 ACACGAGGGTGTGTCCAGGGTGTGTGTCTATACTGTTTAGAGGCACACGGACTAAT
1 ACACGAGGGTGTGTCCAGGGTGTGTATCTATACTACTTAGAGGCACACGGACTAAT
* *
26043270 ACACGGGGGTGTGTCCAGGGTGTGTATCTATACTACTTGGAGGCACACGG
1 ACACGAGGGTGTGTCCAGGGTGTGTATCTATACTACTTAGAGGCACACGG
26043320 GCATGTGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.25
Consensus pattern (56 bp):
ACACGAGGGTGTGTCCAGGGTGTGTATCTATACTACTTAGAGGCACACGGACTAAT
Found at i:26043343 original size:43 final size:43
Alignment explanation
Indices: 26043270--26043407 Score: 177
Period size: 43 Copynumber: 3.2 Consensus size: 43
26043260 ACGGACTAAT
** * **
26043270 ACACGGGGGTGTGTCCAGGGTGTGTATCTATACTACTTGGAGGC
1 ACACGGGCATGTGT-CAGGGTGTGTGTCTATACTGTTTGGAGGC
*
26043314 ACACGGGCATGTGTTAGGGTGTGTGTCTATACTGTTTGGAGGC
1 ACACGGGCATGTGTCAGGGTGTGTGTCTATACTGTTTGGAGGC
* * * *
26043357 ACACGAGCGTGTGTCAGGATGTGTGTCTATACTGTTTGGAAGC
1 ACACGGGCATGTGTCAGGGTGTGTGTCTATACTGTTTGGAGGC
26043400 ACACGGGC
1 ACACGGGC
26043408 TAGCATATGA
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
43 70 0.85
44 12 0.15
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (43 bp):
ACACGGGCATGTGTCAGGGTGTGTGTCTATACTGTTTGGAGGC
Found at i:26044050 original size:40 final size:38
Alignment explanation
Indices: 26043997--26044073 Score: 100
Period size: 40 Copynumber: 2.0 Consensus size: 38
26043987 ACCACTTGAG
*** *
26043997 AATATTTATTGAATTGGCAGTGACACTGTAGACACTGT
1 AATATTTATTGAATCAACAGTGACACTGTAAACACTGT
26044035 AATATTATAATTGAATCAACAGTGACACTGTAAACACTG
1 AATATT-T-ATTGAATCAACAGTGACACTGTAAACACTG
26044074 CAAGATTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 6 0.18
39 1 0.03
40 26 0.79
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (38 bp):
AATATTTATTGAATCAACAGTGACACTGTAAACACTGT
Found at i:26044233 original size:29 final size:29
Alignment explanation
Indices: 26044188--26044293 Score: 133
Period size: 29 Copynumber: 3.7 Consensus size: 29
26044178 AGTATCACTT
26044188 CTGCATCTGTAACTGTATCTGTGACATGA
1 CTGCATCTGTAACTGTATCTGTGACATGA
* * *
26044217 CTGCATCTATAATTGTATATGTGACATGA
1 CTGCATCTGTAACTGTATCTGTGACATGA
* *
26044246 CTGTATCTGT-ACTGTATCTATGACATGA
1 CTGCATCTGTAACTGTATCTGTGACATGA
** *
26044274 CTTTATTTGTAACTGTATCT
1 CTGCATCTGTAACTGTATCT
26044294 CTACTATTTC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
28 23 0.35
29 43 0.65
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (29 bp):
CTGCATCTGTAACTGTATCTGTGACATGA
Found at i:26047854 original size:76 final size:76
Alignment explanation
Indices: 26047726--26047881 Score: 240
Period size: 76 Copynumber: 2.1 Consensus size: 76
26047716 CCAAGTAATG
* * ** *
26047726 GTAACGAAGATTTCTGAGAGCAAGCCTAGGTTTGTATCCTTTACTGTTTATCTGGACAGCAAGTT
1 GTAACGAAGATTTCTGAGAGCAAGCCTAGGTCTGTATCCTTTACCGAATATCTAGACAGCAAGTT
*
26047791 AGATCTCCATT
66 AGATCACCATT
* *
26047802 GTAACGAAGATTTCTGGGAGCAAGCCTGGGTCTGTATCCTTTACCGAATATCTAGACAGCAAGTT
1 GTAACGAAGATTTCTGAGAGCAAGCCTAGGTCTGTATCCTTTACCGAATATCTAGACAGCAAGTT
26047867 AGATCACCATT
66 AGATCACCATT
26047878 GTAA
1 GTAA
26047882 AACGAACGAT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (76 bp):
GTAACGAAGATTTCTGAGAGCAAGCCTAGGTCTGTATCCTTTACCGAATATCTAGACAGCAAGTT
AGATCACCATT
Found at i:26050460 original size:24 final size:25
Alignment explanation
Indices: 26050413--26050468 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 25
26050403 CTGATTGCAG
* * *
26050413 TAATTGGTTTGATCAACTGTTTTTAT
1 TAATTGATTTGAT-AACTGATTTTAA
26050439 TAATTGATTTGAT-ACTGATTTTAA
1 TAATTGATTTGATAACTGATTTTAA
26050463 TAATTG
1 TAATTG
26050469 TTTATTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 15 0.56
26 12 0.44
ACGTcount: A:0.29, C:0.05, G:0.14, T:0.52
Consensus pattern (25 bp):
TAATTGATTTGATAACTGATTTTAA
Found at i:26050780 original size:68 final size:68
Alignment explanation
Indices: 26050701--26050837 Score: 265
Period size: 68 Copynumber: 2.0 Consensus size: 68
26050691 CTTAAATTTC
26050701 TTATTTGTAAATATTAACCTTGCGAAAATTGATAAATATTAATAGTGTATCAATATAATTGTTAA
1 TTATTTGTAAATATTAACCTTGCGAAAATTGATAAATATTAATAGTGTATCAATATAATTGTTAA
26050766 TTG
66 TTG
*
26050769 TTATTTGTAAATATTAACCTTGTGAAAATTGATAAATATTAATAGTGTATCAATATAATTGTTAA
1 TTATTTGTAAATATTAACCTTGCGAAAATTGATAAATATTAATAGTGTATCAATATAATTGTTAA
26050834 TTG
66 TTG
26050837 T
1 T
26050838 ATCTTAGTGA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.39, C:0.05, G:0.12, T:0.44
Consensus pattern (68 bp):
TTATTTGTAAATATTAACCTTGCGAAAATTGATAAATATTAATAGTGTATCAATATAATTGTTAA
TTG
Found at i:26055763 original size:14 final size:14
Alignment explanation
Indices: 26055744--26055770 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26055734 TGTTATTCAC
26055744 ATATTTTGGTTAAT
1 ATATTTTGGTTAAT
26055758 ATATTTTGGTTAA
1 ATATTTTGGTTAA
26055771 CGTCATCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (14 bp):
ATATTTTGGTTAAT
Found at i:26055881 original size:30 final size:31
Alignment explanation
Indices: 26055820--26055882 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
26055810 TTAGTGATTA
*
26055820 TTTTGTCACTTTTCGATAACGTTAGTGACTG
1 TTTTGTCACTTTTCGATAACGTTAATGACTG
26055851 TTTTGTCACATTTTC-A-AA-GTTGAATGACTG
1 TTTTGTCAC-TTTTCGATAACGTT-AATGACTG
26055881 TT
1 TT
26055883 GTGTTAAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 3 0.10
30 11 0.38
31 10 0.34
32 5 0.17
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.46
Consensus pattern (31 bp):
TTTTGTCACTTTTCGATAACGTTAATGACTG
Found at i:26056094 original size:3 final size:3
Alignment explanation
Indices: 26056086--26056113 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
26056076 TAATTTACAC
26056086 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26056114 ATGTTAAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26060954 original size:30 final size:31
Alignment explanation
Indices: 26060890--26060961 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 31
26060880 ACAACAAAAA
* * * *
26060890 GACTATTTTGTCACTTTTTGATAACTTTAGT
1 GACTGTTTTGTCACATTTTCATAACTTGAGT
*
26060921 GACTGTTTTGTCACATTTTCA-AAGTTGAGT
1 GACTGTTTTGTCACATTTTCATAACTTGAGT
26060951 GACTGTTTTGT
1 GACTGTTTTGT
26060962 TAAATGTGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 18 0.50
31 18 0.50
ACGTcount: A:0.21, C:0.12, G:0.18, T:0.49
Consensus pattern (31 bp):
GACTGTTTTGTCACATTTTCATAACTTGAGT
Found at i:26061849 original size:31 final size:31
Alignment explanation
Indices: 26061811--26061928 Score: 140
Period size: 31 Copynumber: 3.9 Consensus size: 31
26061801 TTAATATAAC
26061811 ATTTGGTACCTAAACTTGACACTTTTTCCTA
1 ATTTGGTACCTAAACTTGACACTTTTTCCTA
*
26061842 ATTTGGTACCTAAACTT----TTTTTGGTCC-A
1 ATTTGGTACCTAAACTTGACACTTTT--TCCTA
*
26061870 ATTTGATA-CTCAAACTTGACACTTTTTCCTA
1 ATTTGGTACCT-AAACTTGACACTTTTTCCTA
26061901 ATTTGGTACCTAAACTTGACACTGTTTT
1 ATTTGGTACCTAAACTTGACACT-TTTT
26061929 GGGACAACCT
Statistics
Matches: 73, Mismatches: 4, Indels: 19
0.76 0.04 0.20
Matches are distributed among these distances:
27 6 0.08
28 14 0.19
29 3 0.04
30 3 0.04
31 37 0.51
32 10 0.14
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.43
Consensus pattern (31 bp):
ATTTGGTACCTAAACTTGACACTTTTTCCTA
Found at i:26079088 original size:15 final size:15
Alignment explanation
Indices: 26079068--26079098 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26079058 TTGTCTCTTC
26079068 CTACTCTATCTGAAT
1 CTACTCTATCTGAAT
*
26079083 CTACTCTTTCTGAAT
1 CTACTCTATCTGAAT
26079098 C
1 C
26079099 CAACAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (15 bp):
CTACTCTATCTGAAT
Found at i:26086868 original size:3 final size:3
Alignment explanation
Indices: 26086860--26086899 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
26086850 TATAAATTAG
26086860 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
26086900 ATCAATAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:26087782 original size:21 final size:22
Alignment explanation
Indices: 26087751--26087792 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
26087741 AGTTAAATAT
*
26087751 CTATATATTCTTAATTTTATTA
1 CTATATATTCTAAATTTTATTA
26087773 CTATA-ATTCTAAATTTTATT
1 CTATATATTCTAAATTTTATT
26087793 TTTATTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (22 bp):
CTATATATTCTAAATTTTATTA
Found at i:26088945 original size:5 final size:5
Alignment explanation
Indices: 26088935--26088971 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
26088925 AATTACGATG
*
26088935 AAATT AAATT AAATT AAATT AAATTT AAATC AAATT A
1 AAATT AAATT AAATT AAATT AAA-TT AAATT AAATT A
26088972 TGATAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:26089739 original size:20 final size:19
Alignment explanation
Indices: 26089700--26089747 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
26089690 ATTTGATGAG
26089700 AATAA-TTTATTAAATAAA
1 AATAATTTTATTAAATAAA
*
26089718 AATAATTTTTTTAAAGTAAA
1 AATAATTTTATTAAA-TAAA
*
26089738 AATTATTTTA
1 AATAATTTTA
26089748 AAATTTCTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 5 0.20
19 8 0.32
20 12 0.48
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
AATAATTTTATTAAATAAA
Found at i:26089746 original size:19 final size:18
Alignment explanation
Indices: 26089700--26089746 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
26089690 ATTTGATGAG
*
26089700 AATAATTTATTAAATAAA
1 AATAATTTTTTAAATAAA
26089718 AATAATTTTTTTAAAGTAAA
1 AATAA-TTTTTTAAA-TAAA
*
26089738 AATTATTTT
1 AATAATTTT
26089747 AAAATTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.20
19 12 0.48
20 8 0.32
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
AATAATTTTTTAAATAAA
Found at i:26090814 original size:10 final size:10
Alignment explanation
Indices: 26090801--26090838 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
26090791 ATTTTAAAAA
26090801 ATATTTTTAT
1 ATATTTTTAT
26090811 ATATTTTT-T
1 ATATTTTTAT
26090820 AATATTTTTA-
1 -ATATTTTTAT
26090830 ATATTTTTA
1 ATATTTTTA
26090839 AAATTCTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 10 0.38
10 16 0.62
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATATTTTTAT
Found at i:26090825 original size:20 final size:19
Alignment explanation
Indices: 26090800--26090837 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
26090790 AATTTTAAAA
26090800 AATATTTTTATATATTTTTT
1 AATATTTTTA-ATATTTTTT
26090820 AATATTTTTAATATTTTT
1 AATATTTTTAATATTTTT
26090838 AAAATTCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
AATATTTTTAATATTTTTT
Found at i:26090837 original size:9 final size:9
Alignment explanation
Indices: 26090800--26090839 Score: 62
Period size: 9 Copynumber: 4.2 Consensus size: 9
26090790 AATTTTAAAA
26090800 AATATTTTT
1 AATATTTTT
26090809 ATATATTTTTT
1 A-ATA-TTTTT
26090820 AATATTTTT
1 AATATTTTT
26090829 AATATTTTT
1 AATATTTTT
26090838 AA
1 AA
26090840 AATTCTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 17 0.59
10 6 0.21
11 6 0.21
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
AATATTTTT
Found at i:26092620 original size:18 final size:19
Alignment explanation
Indices: 26092577--26092612 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26092567 ATCATATATA
26092577 ATTATATTATATTTTTATG
1 ATTATATTATATTTTTATG
*
26092596 ATGATATT-TATTTTTAT
1 ATTATATTATATTTTTAT
26092613 TTTTATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (19 bp):
ATTATATTATATTTTTATG
Found at i:26092897 original size:12 final size:11
Alignment explanation
Indices: 26092861--26092904 Score: 54
Period size: 12 Copynumber: 3.9 Consensus size: 11
26092851 ATTTTTATGT
26092861 TATATTT-TTA
1 TATATTTATTA
*
26092871 TATATTAATTAA
1 TATATTTATT-A
26092883 TATATTGTATTA
1 TATATT-TATTA
26092895 TATATTTATT
1 TATATTTATT
26092905 TAAATTTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
10 6 0.21
11 6 0.21
12 14 0.48
13 3 0.10
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TATATTTATTA
Found at i:26093415 original size:28 final size:30
Alignment explanation
Indices: 26093349--26093415 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 30
26093339 ACACATCAAC
*
26093349 ATTTAATTTATTTTTTGAAAAATTATAAAA
1 ATTTAATTAATTTTTTGAAAAATTATAAAA
26093379 ATATT--TTAATTTTTT-AAAAATT-TAAAA
1 AT-TTAATTAATTTTTTGAAAAATTATAAAA
26093406 ATTTAATTAA
1 ATTTAATTAA
26093416 ATATTTATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
26 2 0.06
27 7 0.21
28 11 0.33
29 9 0.27
30 2 0.06
31 2 0.06
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (30 bp):
ATTTAATTAATTTTTTGAAAAATTATAAAA
Found at i:26093422 original size:28 final size:28
Alignment explanation
Indices: 26093366--26093422 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 28
26093356 TTATTTTTTG
* *
26093366 AAAAATTATAAAAATATTTTAATTTTTT
1 AAAAATTATAAAAATATTTTAAATATTT
26093394 AAAAATT-TAAAAAT-TTAATTAAATATTT
1 AAAAATTATAAAAATATT--TTAAATATTT
26093422 A
1 A
26093423 TGTGTCATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
26 2 0.08
27 7 0.28
28 16 0.64
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
AAAAATTATAAAAATATTTTAAATATTT
Found at i:26103761 original size:30 final size:32
Alignment explanation
Indices: 26103690--26103766 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 32
26103680 TTAAATTAGT
*
26103690 AATGAT-AAAATTATACTTTAACCCTCTCAAA
1 AATGATAAAAATTATAATTTAACCCTCTCAAA
*
26103721 AATGATAAAAATT-TAATTTAACCCT-TTAAA
1 AATGATAAAAATTATAATTTAACCCTCTCAAA
* *
26103751 ATTTATAAAAA-TATAA
1 AATGATAAAAATTATAA
26103767 ACTATTGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 16 0.40
31 17 0.43
32 6 0.15
ACGTcount: A:0.51, C:0.12, G:0.03, T:0.35
Consensus pattern (32 bp):
AATGATAAAAATTATAATTTAACCCTCTCAAA
Found at i:26104718 original size:23 final size:22
Alignment explanation
Indices: 26104674--26104719 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
26104664 CGTGTTATGA
* **
26104674 AATAAATAATAAAGAGGTAAAG
1 AATAAAAAATAAAGAGCAAAAG
26104696 AATAAAAAATATAAGAGCAAAAG
1 AATAAAAAATA-AAGAGCAAAAG
26104719 A
1 A
26104720 GAACATACTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.67, C:0.02, G:0.15, T:0.15
Consensus pattern (22 bp):
AATAAAAAATAAAGAGCAAAAG
Found at i:26105111 original size:23 final size:23
Alignment explanation
Indices: 26105059--26105111 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
26105049 GCATGTTTTC
* * *
26105059 ATAAACATATTCATTTAATTTTA
1 ATAAATATATTCATTTAACTTAA
**
26105082 ACCAATATATTCATTTAACTTAA
1 ATAAATATATTCATTTAACTTAA
26105105 ATAAATA
1 ATAAATA
26105112 AATATAAATA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (23 bp):
ATAAATATATTCATTTAACTTAA
Found at i:26109958 original size:6 final size:6
Alignment explanation
Indices: 26109949--26109975 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
26109939 ATCTCATTTT
26109949 CCTCAC CCTCAC CCTCAC CCTCAC CCT
1 CCTCAC CCTCAC CCTCAC CCTCAC CCT
26109976 AATTCCAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.67, G:0.00, T:0.19
Consensus pattern (6 bp):
CCTCAC
Found at i:26112498 original size:16 final size:16
Alignment explanation
Indices: 26112474--26112504 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26112464 TATATGATTA
26112474 TTTGGATATTTTTATC
1 TTTGGATATTTTTATC
*
26112490 TTTGTATATTTTTAT
1 TTTGGATATTTTTAT
26112505 ATCAAACTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.03, G:0.10, T:0.68
Consensus pattern (16 bp):
TTTGGATATTTTTATC
Found at i:26112600 original size:23 final size:24
Alignment explanation
Indices: 26112571--26112615 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
26112561 AGTTAACAAA
26112571 ATATATTTG-TTATATAAAAATTT
1 ATATATTTGTTTATATAAAAATTT
*
26112594 ATATATTTGTTTATTTAAAAAT
1 ATATATTTGTTTATATAAAAAT
26112616 GTTGTTGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.53
Consensus pattern (24 bp):
ATATATTTGTTTATATAAAAATTT
Found at i:26114475 original size:16 final size:15
Alignment explanation
Indices: 26114456--26114488 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 15
26114446 AAAGGCATTT
26114456 TTTTAATATTTTAATA
1 TTTTAATA-TTTAATA
26114472 TTTTAATATTTAATA
1 TTTTAATATTTAATA
26114487 TT
1 TT
26114489 ATAGTTTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTTAATATTTAATA
Found at i:26114485 original size:7 final size:8
Alignment explanation
Indices: 26114456--26114488 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
26114446 AAAGGCATTT
26114456 TTTTAATA
1 TTTTAATA
26114464 TTTTAATA
1 TTTTAATA
26114472 TTTTAATA
1 TTTTAATA
26114480 -TTTAATA
1 TTTTAATA
26114487 TT
1 TT
26114489 ATAGTTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTTAATA
Found at i:26114922 original size:13 final size:13
Alignment explanation
Indices: 26114906--26114936 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
26114896 ATCATCTTTC
26114906 TTCTTCATATTGA
1 TTCTTCATATTGA
26114919 TTCTTCATATTGA
1 TTCTTCATATTGA
26114932 TTCTT
1 TTCTT
26114937 GGCCAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.58
Consensus pattern (13 bp):
TTCTTCATATTGA
Found at i:26118072 original size:16 final size:14
Alignment explanation
Indices: 26118043--26118080 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
26118033 TAATACATTT
26118043 TATTATTTAACATA
1 TATTATTTAACATA
26118057 TATTATTTTAAACATA
1 TATTA-TTT-AACATA
26118073 TATT-TTTA
1 TATTATTTA
26118081 TTCTAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 1 0.05
14 8 0.36
15 3 0.14
16 10 0.45
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTATTTAACATA
Found at i:26119589 original size:17 final size:18
Alignment explanation
Indices: 26119557--26119594 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
26119547 GGTAACTTTT
26119557 AATAACATTAAGGACTAA
1 AATAACATTAAGGACTAA
*
26119575 AATAATATT-AGGACTAA
1 AATAACATTAAGGACTAA
26119592 AAT
1 AAT
26119595 GAGAAAACGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (18 bp):
AATAACATTAAGGACTAA
Found at i:26133748 original size:72 final size:72
Alignment explanation
Indices: 26133631--26133774 Score: 270
Period size: 72 Copynumber: 2.0 Consensus size: 72
26133621 AAAACCGGGC
* *
26133631 ATTACATTGACTGTTGAGCTTGGAAGTTTGTCATTATAGTTAGGTTTCATATGCCACGCACAAGG
1 ATTACATTGACTCTTGAGCCTGGAAGTTTGTCATTATAGTTAGGTTTCATATGCCACGCACAAGG
26133696 TTATCGG
66 TTATCGG
26133703 ATTACATTGACTCTTGAGCCTGGAAGTTTGTCATTATAGTTAGGTTTCATATGCCACGCACAAGG
1 ATTACATTGACTCTTGAGCCTGGAAGTTTGTCATTATAGTTAGGTTTCATATGCCACGCACAAGG
26133768 TTATCGG
66 TTATCGG
26133775 TTCCAGGGCC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (72 bp):
ATTACATTGACTCTTGAGCCTGGAAGTTTGTCATTATAGTTAGGTTTCATATGCCACGCACAAGG
TTATCGG
Found at i:26139291 original size:18 final size:18
Alignment explanation
Indices: 26139268--26139304 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26139258 GGAAAATTCA
26139268 TTCGGGAAAAATCATGGG
1 TTCGGGAAAAATCATGGG
26139286 TTCGGGAAAAATCATGGG
1 TTCGGGAAAAATCATGGG
26139304 T
1 T
26139305 CACTAATGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.24
Consensus pattern (18 bp):
TTCGGGAAAAATCATGGG
Found at i:26139576 original size:16 final size:17
Alignment explanation
Indices: 26139552--26139586 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
26139542 ATTGTATTTT
26139552 ATTTGTTTAAAGAA-TG
1 ATTTGTTTAAAGAAGTG
*
26139568 ATTTTTTTAAAGAAGTG
1 ATTTGTTTAAAGAAGTG
26139585 AT
1 AT
26139587 AGAATTCGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (17 bp):
ATTTGTTTAAAGAAGTG
Found at i:26144260 original size:18 final size:19
Alignment explanation
Indices: 26144222--26144260 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
26144212 ACTATAAAAA
26144222 AATAAAAATAAATAAAATTT
1 AATAAAAAT-AATAAAATTT
*
26144242 AATAAAAAT-ATATAATTT
1 AATAAAAATAATAAAATTT
26144260 A
1 A
26144261 TTTAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
20 9 0.50
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAAAAATAATAAAATTT
Found at i:26144316 original size:9 final size:9
Alignment explanation
Indices: 26144304--26144346 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
26144294 AAAATGGTAA
26144304 AAAAATTAT
1 AAAAATTAT
*
26144313 AAAAATTCT
1 AAAAATTAT
26144322 AAAAATTTAT
1 AAAAA-TTAT
*
26144332 AAAAGTTAT
1 AAAAATTAT
26144341 ACAAAA
1 A-AAAA
26144347 AATTATAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
9 18 0.64
10 10 0.36
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:26144325 original size:19 final size:20
Alignment explanation
Indices: 26144301--26144355 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
26144291 TTAAAAATGG
*
26144301 TAAAAAAATTATAAAAATTC
1 TAAAAAAATTATAAAAATTA
* *
26144321 T-AAAAATTTATAAAAGTTA
1 TAAAAAAATTATAAAAATTA
26144340 TACAAAAAATTATAAA
1 TA-AAAAAATTATAAA
26144356 TTATATTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 16 0.55
20 1 0.03
21 12 0.41
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (20 bp):
TAAAAAAATTATAAAAATTA
Found at i:26144485 original size:10 final size:9
Alignment explanation
Indices: 26144470--26144518 Score: 66
Period size: 9 Copynumber: 5.4 Consensus size: 9
26144460 GACATGTGAC
26144470 AAAAAATAAT
1 AAAAAAT-AT
26144480 AAAAAATA-
1 AAAAAATAT
26144488 AAAATAA-AT
1 AAAA-AATAT
26144497 AAAAAATAT
1 AAAAAATAT
26144506 AAAAAATAT
1 AAAAAATAT
26144515 AAAA
1 AAAA
26144519 TACATCTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
8 7 0.19
9 22 0.61
10 7 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (9 bp):
AAAAAATAT
Found at i:26144492 original size:16 final size:16
Alignment explanation
Indices: 26144471--26144520 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
26144461 ACATGTGACA
26144471 AAAAATAATAAAAAAT
1 AAAAATAATAAAAAAT
26144487 AAAAATAAATAAAAAAT
1 AAAAAT-AATAAAAAAT
*
26144504 ATAAAA-AATATAAAAT
1 A-AAAATAATAAAAAAT
26144520 A
1 A
26144521 CATCTTTTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 16 0.52
17 11 0.35
18 4 0.13
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (16 bp):
AAAAATAATAAAAAAT
Found at i:26144567 original size:28 final size:27
Alignment explanation
Indices: 26144535--26144589 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
26144525 TTTTAGTACA
*
26144535 ATATTTTTTAATATTTTTTATAAATTTT
1 ATATTTTTTAACATTTTTTAT-AATTTT
*
26144563 ATATTTTTTTACATTTTTTATAATTTT
1 ATATTTTTTAACATTTTTTATAATTTT
26144590 CTTGAGACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (27 bp):
ATATTTTTTAACATTTTTTATAATTTT
Found at i:26144571 original size:9 final size:9
Alignment explanation
Indices: 26144535--26144589 Score: 56
Period size: 10 Copynumber: 5.8 Consensus size: 9
26144525 TTTTAGTACA
26144535 ATATTTTTT
1 ATATTTTTT
26144544 AATATTTTTT
1 -ATATTTTTT
**
26144554 ATAAATTTT
1 ATATTTTTT
26144563 ATATTTTTTT
1 ATA-TTTTTT
*
26144573 ACATTTTTT
1 ATATTTTTT
26144582 ATAATTTT
1 AT-ATTTT
26144590 CTTGAGACTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
9 17 0.46
10 20 0.54
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (9 bp):
ATATTTTTT
Found at i:26144588 original size:10 final size:10
Alignment explanation
Indices: 26144537--26144678 Score: 55
Period size: 10 Copynumber: 14.7 Consensus size: 10
26144527 TTAGTACAAT
26144537 ATTTTTTA-A
1 ATTTTTTATA
26144546 TATTTTTTATA
1 -ATTTTTTATA
*
26144557 A-ATTTTAT-
1 ATTTTTTATA
26144565 ATTTTTT-TA
1 ATTTTTTATA
26144574 CATTTTTTATA
1 -ATTTTTTATA
* *
26144585 ATTTTCT-TG
1 ATTTTTTATA
***
26144594 AGACTTTATA
1 ATTTTTTATA
**
26144604 AAATTTTATA
1 ATTTTTTATA
*
26144614 ATTTTTTATG
1 ATTTTTTATA
*
26144624 A-TGTTTATA
1 ATTTTTTATA
* **
26144633 AATTTTCCTA
1 ATTTTTTATA
*
26144643 ATTTTTAATA
1 ATTTTTTATA
* **
26144653 AATTTAAAT-
1 ATTTTTTATA
*
26144662 AGTTTTTATA
1 ATTTTTTATA
26144672 ATTTTTT
1 ATTTTTT
26144679 TATTAAAATT
Statistics
Matches: 96, Mismatches: 28, Indels: 16
0.69 0.20 0.11
Matches are distributed among these distances:
8 2 0.02
9 27 0.28
10 64 0.67
11 3 0.03
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:26144699 original size:31 final size:29
Alignment explanation
Indices: 26144644--26144711 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 29
26144634 ATTTTCCTAA
* *
26144644 TTTTTAATAAATTTAAATAGTTTTTATAATT
1 TTTTTATTAAATTTAAATAATTTTTAT--TT
26144675 TTTTTATTAAAATTT-AATAATTTTTATTT
1 TTTTTATT-AAATTTAAATAATTTTTATTT
26144704 TTTTTATT
1 TTTTTATT
26144712 TTTACCACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 10 0.29
31 18 0.53
32 6 0.18
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (29 bp):
TTTTTATTAAATTTAAATAATTTTTATTT
Found at i:26149088 original size:69 final size:69
Alignment explanation
Indices: 26148957--26149092 Score: 209
Period size: 69 Copynumber: 2.0 Consensus size: 69
26148947 CTCTTTGCAA
* *
26148957 TTTGTATATCTACAATTGTCCCAACCTCCAATCCATGCCCCCAAACATGCTTCCGCATTCTCTTT
1 TTTGTATATCTACAATTGTCCCAACCTCCAATCCATGCCCCCAAACATGCTCCCGCACTCTCTTT
26149022 CTTT
66 CTTT
* * * * *
26149026 TTTGTCTATCTACAATTGTCCCAAGCTCCAATCCATGCCGCCAAACATGCTCCCTCCCTCTCTTT
1 TTTGTATATCTACAATTGTCCCAACCTCCAATCCATGCCCCCAAACATGCTCCCGCACTCTCTTT
26149091 CT
66 CT
26149093 CGTTTAAACA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.21, C:0.37, G:0.08, T:0.35
Consensus pattern (69 bp):
TTTGTATATCTACAATTGTCCCAACCTCCAATCCATGCCCCCAAACATGCTCCCGCACTCTCTTT
CTTT
Found at i:26155680 original size:100 final size:100
Alignment explanation
Indices: 26155507--26155709 Score: 406
Period size: 100 Copynumber: 2.0 Consensus size: 100
26155497 TCAACACTTC
26155507 GCCTCTCTTTGTGAGTTGATTATCGACAGCTGTCCAAAGCTCCAATCCATGCCGGAAAAGAGTCT
1 GCCTCTCTTTGTGAGTTGATTATCGACAGCTGTCCAAAGCTCCAATCCATGCCGGAAAAGAGTCT
26155572 CCTTACCTCTCTTTCTTATTTGTCCATTAACAACT
66 CCTTACCTCTCTTTCTTATTTGTCCATTAACAACT
26155607 GCCTCTCTTTGTGAGTTGATTATCGACAGCTGTCCAAAGCTCCAATCCATGCCGGAAAAGAGTCT
1 GCCTCTCTTTGTGAGTTGATTATCGACAGCTGTCCAAAGCTCCAATCCATGCCGGAAAAGAGTCT
26155672 CCTTACCTCTCTTTCTTATTTGTCCATTAACAACT
66 CCTTACCTCTCTTTCTTATTTGTCCATTAACAACT
26155707 GCC
1 GCC
26155710 CCTTGCTGAG
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 103 1.00
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (100 bp):
GCCTCTCTTTGTGAGTTGATTATCGACAGCTGTCCAAAGCTCCAATCCATGCCGGAAAAGAGTCT
CCTTACCTCTCTTTCTTATTTGTCCATTAACAACT
Found at i:26157979 original size:20 final size:22
Alignment explanation
Indices: 26157896--26157980 Score: 54
Period size: 25 Copynumber: 4.0 Consensus size: 22
26157886 AACTATTTCG
*
26157896 AAATAAAAATTTTAATTTTTAA
1 AAATAAAAACTTTAATTTTTAA
** * *
26157918 AAA-AAGTA--GTGATTTTTAA
1 AAATAAAAACTTTAATTTTTAA
*
26157937 AAAAAAGGAAACTTTAGATTTTTAA
1 AAATAA--AAACTTTA-ATTTTTAA
26157962 AAATAAAAA-TTT-ATTTTTA
1 AAATAAAAACTTTAATTTTTA
26157981 GACATTTTAA
Statistics
Matches: 48, Mismatches: 9, Indels: 14
0.68 0.13 0.20
Matches are distributed among these distances:
19 12 0.25
20 9 0.19
21 3 0.06
22 7 0.15
23 3 0.06
24 1 0.02
25 13 0.27
ACGTcount: A:0.52, C:0.01, G:0.07, T:0.40
Consensus pattern (22 bp):
AAATAAAAACTTTAATTTTTAA
Found at i:26158193 original size:120 final size:122
Alignment explanation
Indices: 26157968--26158218 Score: 368
Period size: 121 Copynumber: 2.1 Consensus size: 122
26157958 TTAAAAATAA
26157968 AAATTTATT-TTTAGACATTTTAAAAGAAAAAGTTTAAATTTTTAAACAAAGTTTGATTTTTTTA
1 AAATTT-TTATTTAGACATTTTAAAAGAAAAAGTTTAAATTTTTAAACAAAGTTTGATTTTTTTA
* * *
26158032 ACTATTTCAAAATAAAACTTTTGATTTTTATGTAAAGTAGT-A-ATTTAAAAAAAATTT
65 ACTATTTCAAAATAAAAATTTTGATTTTTAAGTAAAATAGTAATATTTAAAAAAAA-TT
* * *
26158089 AGATTTTTATTTAGGCATTTTAAAAGAAAAATTTTAAATTTTTAAA-AAGAGTTTGA-TTTTTTA
1 AAATTTTTATTTAGACATTTTAAAAGAAAAAGTTTAAATTTTTAAACAA-AGTTTGATTTTTTTA
* *
26158152 AGTATTTCGAAATAAAAATTTTGATTTTTAAGTAAAATAGTAATATTTAAAAAAAATT
65 ACTATTTCAAAATAAAAATTTTGATTTTTAAGTAAAATAGTAATATTTAAAAAAAATT
26158210 AAATTTTTA
1 AAATTTTTA
26158219 AAAATAAAAA
Statistics
Matches: 117, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
120 47 0.40
121 58 0.50
122 12 0.10
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (122 bp):
AAATTTTTATTTAGACATTTTAAAAGAAAAAGTTTAAATTTTTAAACAAAGTTTGATTTTTTTAA
CTATTTCAAAATAAAAATTTTGATTTTTAAGTAAAATAGTAATATTTAAAAAAAATT
Found at i:26158866 original size:21 final size:20
Alignment explanation
Indices: 26158842--26158903 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 20
26158832 ATATAAGTTT
26158842 TGATTTTTTTTTAAAAAATAG
1 TGATTTTTTTTTAAAAAA-AG
*
26158863 TGATTTTATTTT-AAAAAAG
1 TGATTTTTTTTTAAAAAAAG
26158882 TGAATTTTTTATTTTAAAAAAA
1 TG-A-TTTTT-TTTTAAAAAAA
26158904 AATTCGACCA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 4 0.11
20 6 0.17
21 15 0.43
22 4 0.11
23 6 0.17
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (20 bp):
TGATTTTTTTTTAAAAAAAG
Found at i:26158879 original size:22 final size:23
Alignment explanation
Indices: 26158842--26158903 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
26158832 ATATAAGTTT
* *
26158842 TGATTTT-TTTTTAAAAAAT-AG
1 TGATTTTATTTTAAAAAAATGAA
*
26158863 TGATTTTATTTTAAAAAAGTGAA
1 TGATTTTATTTTAAAAAAATGAA
*
26158886 T-TTTTTATTTTAAAAAAA
1 TGATTTTATTTTAAAAAAA
26158904 AATTCGACCA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 7 0.21
22 25 0.74
23 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (23 bp):
TGATTTTATTTTAAAAAAATGAA
Found at i:26159467 original size:21 final size:21
Alignment explanation
Indices: 26159422--26159475 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
26159412 CATTTGTATA
*
26159422 ATTTTTATTTATTCTTATTTC
1 ATTTTTATTTATTCTTATGTC
26159443 ATTTTTATTT-TT-TTCATGTC
1 ATTTTTATTTATTCTT-ATGTC
*
26159463 TATTTATATTTAT
1 -ATTTTTATTTAT
26159476 GTTTTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 2 0.07
20 6 0.21
21 19 0.68
22 1 0.04
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (21 bp):
ATTTTTATTTATTCTTATGTC
Found at i:26162738 original size:59 final size:59
Alignment explanation
Indices: 26162660--26162816 Score: 192
Period size: 59 Copynumber: 2.7 Consensus size: 59
26162650 GGACGCTCGG
* * **
26162660 GGGGTAAAATGGTAATTTTTGGTAAAATCATGGTCCAAAAA-AGAATTTTGGAAAGTTTT
1 GGGGTAAAATGGTAATTTTTGGTGAAATCAGGGT-CAAAAATAGAATTTTGGAAAGTTCA
* * * * * *
26162719 TGGGTAAAATAGTAATTTTTGGTGAAATTAGGGTTAAAAATGGGATTTTGGAAAGTTCA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCAGGGTCAAAAATAGAATTTTGGAAAGTTCA
26162778 GGGGTAAAATGGTAATTTTTGGTGAAATCGAGGGT-AAAA
1 GGGGTAAAATGGTAATTTTTGGTGAAATC-AGGGTCAAAA
26162817 TGAGATTATT
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
58 5 0.06
59 73 0.88
60 5 0.06
ACGTcount: A:0.36, C:0.03, G:0.27, T:0.33
Consensus pattern (59 bp):
GGGGTAAAATGGTAATTTTTGGTGAAATCAGGGTCAAAAATAGAATTTTGGAAAGTTCA
Found at i:26162818 original size:30 final size:29
Alignment explanation
Indices: 26162720--26162818 Score: 89
Period size: 30 Copynumber: 3.3 Consensus size: 29
26162710 GAAAGTTTTT
* *
26162720 GGGTAAAATAGTAATTTTTGGTGAAATTA
1 GGGTAAAATGGTAATTTTTGGTGAAATCA
*
26162749 GGGTTAAAAATGG-GA-TTTT-G-GAAAGTTCA
1 GGG-T-AAAATGGTAATTTTTGGTGAAA--TCA
26162778 GGGGTAAAATGGTAATTTTTGGTGAAATCGA
1 -GGGTAAAATGGTAATTTTTGGTGAAATC-A
26162809 GGGTAAAATG
1 GGGTAAAATG
26162819 AGATTATTAG
Statistics
Matches: 56, Mismatches: 4, Indels: 19
0.71 0.05 0.24
Matches are distributed among these distances:
27 4 0.07
28 8 0.14
29 11 0.20
30 21 0.38
31 8 0.14
32 4 0.07
ACGTcount: A:0.35, C:0.02, G:0.30, T:0.32
Consensus pattern (29 bp):
GGGTAAAATGGTAATTTTTGGTGAAATCA
Found at i:26166470 original size:24 final size:24
Alignment explanation
Indices: 26166403--26166471 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
26166393 TTATTTAACT
* * *
26166403 TAATTAAACATATTCACGAACATG
1 TAATTGAACATGTTCACGAACATA
* **
26166427 TTA-TGAACATGTTCGTGAACATA
1 TAATTGAACATGTTCACGAACATA
26166450 TAATTGAACATGTTCACGAACA
1 TAATTGAACATGTTCACGAACA
26166472 ATGTTAATGA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
23 17 0.49
24 18 0.51
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (24 bp):
TAATTGAACATGTTCACGAACATA
Found at i:26172230 original size:69 final size:69
Alignment explanation
Indices: 26172138--26172287 Score: 205
Period size: 69 Copynumber: 2.2 Consensus size: 69
26172128 GGTTTCAACA
* **
26172138 CCTCACCTCTCTTTCTTATTTGTCTATCTTA-GGCTGTCCCAA-CTTCCAATCCATGCCCCCAAA
1 CCTC-CCTCTCTTTCTAATTTGTCTATC-TACAACTGTCCCAAGC-TCCAATCCATGCCCCCAAA
26172201 CATGCTC
63 CATGCTC
* * *
26172208 CCTCCCTCTCTTTCTAATTTGTCTATCTACAATTGTCCCAAGCTCCAATCCATGTCGCCAAACAT
1 CCTCCCTCTCTTTCTAATTTGTCTATCTACAACTGTCCCAAGCTCCAATCCATGCCCCCAAACAT
26172273 GCTC
66 GCTC
26172277 CCTCCCTCTCT
1 CCTCCCTCTCT
26172288 GTTTCATTTG
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
68 2 0.03
69 65 0.90
70 5 0.07
ACGTcount: A:0.19, C:0.39, G:0.08, T:0.34
Consensus pattern (69 bp):
CCTCCCTCTCTTTCTAATTTGTCTATCTACAACTGTCCCAAGCTCCAATCCATGCCCCCAAACAT
GCTC
Found at i:26174531 original size:17 final size:15
Alignment explanation
Indices: 26174500--26174540 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 15
26174490 TTGATAACTC
26174500 TAAAAAAAAATTAAA
1 TAAAAAAAAATTAAA
26174515 TAAAAATAAAATATAAA
1 TAAAAA-AAAAT-TAAA
26174532 TGAAAAAAA
1 T-AAAAAAA
26174541 TTGAGAGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 6 0.26
16 5 0.22
17 7 0.30
18 5 0.22
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (15 bp):
TAAAAAAAAATTAAA
Found at i:26175086 original size:26 final size:26
Alignment explanation
Indices: 26175048--26175099 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26175038 TCACTATTTG
* *
26175048 TTGAAGTTTAATTTTATTCGGGCCCA
1 TTGAAGTTCAATTTTATCCGGGCCCA
26175074 TTGAAGTTCAATTTTATCCGGGCCCA
1 TTGAAGTTCAATTTTATCCGGGCCCA
26175100 ATAAAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (26 bp):
TTGAAGTTCAATTTTATCCGGGCCCA
Found at i:26175144 original size:17 final size:17
Alignment explanation
Indices: 26175104--26175147 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
26175094 GGCCCAATAA
* *
26175104 AAATTTAAATTTATTTT
1 AAATTTAAATTCATTTG
**
26175121 AGGTTTAAATTCATTTG
1 AAATTTAAATTCATTTG
26175138 AAATTTAAAT
1 AAATTTAAAT
26175148 CTATTGTAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (17 bp):
AAATTTAAATTCATTTG
Found at i:26175927 original size:3 final size:3
Alignment explanation
Indices: 26175919--26175976 Score: 55
Period size: 3 Copynumber: 18.7 Consensus size: 3
26175909 AATGAATCAG
* * *
26175919 TAA TAA TAA TATT TAA TAA TAA TAA TAA CAT TAA TTAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA
26175966 T-A TCAA TAA TA
1 TAA T-AA TAA TA
26175977 TTATTTTTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
2 2 0.04
3 36 0.80
4 7 0.16
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:26175943 original size:19 final size:20
Alignment explanation
Indices: 26175919--26175968 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
26175909 AATGAATCAG
26175919 TAATAATAATATTTAA-TAA
1 TAATAATAATATTTAATTAA
*
26175938 TAATAATAACA-TTAATTAA
1 TAATAATAATATTTAATTAA
26175957 TAATAATAATAT
1 TAATAATAATAT
26175969 CAATAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
TAATAATAATATTTAATTAA
Found at i:26175975 original size:22 final size:22
Alignment explanation
Indices: 26175919--26175975 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
26175909 AATGAATCAG
* *
26175919 TAATAATAATATTTAATAATAA
1 TAATAACAATAATTAATAATAA
*
26175941 TAATAACATTAATTAATAATAA
1 TAATAACAATAATTAATAATAA
*
26175963 TAATATCAATAAT
1 TAATAACAATAAT
26175976 ATTATTTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.39
Consensus pattern (22 bp):
TAATAACAATAATTAATAATAA
Found at i:26177181 original size:30 final size:29
Alignment explanation
Indices: 26177145--26177265 Score: 106
Period size: 30 Copynumber: 4.1 Consensus size: 29
26177135 ACCTTAGAGG
*
26177145 CCCTTAAACTATCCAGAAATCATATTTTGA
1 CCCTTAAACTTTCCA-AAATCATATTTTGA
*
26177175 CCCTTAAACTTTTCCAAAATTCCAT-TTTCGA
1 CCCTTAAAC-TTTCCAAAA-T-CATATTTTGA
* * * *
26177206 CCC-TAAACTTTTCAAAAATTACATTTTTA
1 CCCTTAAAC-TTTCCAAAATCATATTTTGA
*
26177235 CCCTTAAACTTTCCAAAA-C-TATTTTTA
1 CCCTTAAACTTTCCAAAATCATATTTTGA
26177262 CCCT
1 CCCT
26177266 GATTTTTCCA
Statistics
Matches: 76, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
27 11 0.14
28 1 0.01
29 16 0.21
30 31 0.41
31 14 0.18
32 3 0.04
ACGTcount: A:0.33, C:0.26, G:0.02, T:0.38
Consensus pattern (29 bp):
CCCTTAAACTTTCCAAAATCATATTTTGA
Found at i:26177237 original size:29 final size:29
Alignment explanation
Indices: 26177168--26177462 Score: 147
Period size: 30 Copynumber: 10.2 Consensus size: 29
26177158 CAGAAATCAT
* *
26177168 ATTTTGACCCTTAAACTTTTCCAAAATTCC
1 ATTTTTACCC-TAAACTTTTCCAAAATTAC
* *
26177198 ATTTTCGACCCTAAACTTTTCAAAAATTAC
1 ATTTT-TACCCTAAACTTTTCCAAAATTAC
*
26177228 ATTTTTACCCTTAAAC-TTTCCAAAACT--
1 ATTTTTACCC-TAAACTTTTCCAAAATTAC
* *
26177255 ATTTTTACCCT-GATTTTTCCAAAATTACC
1 ATTTTTACCCTAAACTTTTCCAAAATTA-C
* *
26177284 A-TTTTACCGCCAAAC-TTTCCAAAATTCC
1 ATTTTTACC-CTAAACTTTTCCAAAATTAC
* * * *
26177312 AATTTGACCCT-AA-TTTTTCATAATTTACC
1 ATTTTTACCCTAAACTTTTCCA-AAATTA-C
26177341 A-TTTTACCCCTAAAC-TTTCCAAAATT-C
1 ATTTTTA-CCCTAAACTTTTCCAAAATTAC
* ***
26177368 GATTTTGA-CCTCATTTTTTTTCCAAAATTACC
1 -ATTTTTACCCT-A-AACTTTTCCAAAATTA-C
26177400 A-TTTTACCCTCAAA--TTTCCAAAATT-C
1 ATTTTTACCCT-AAACTTTTCCAAAATTAC
* *
26177426 AATTTTTAACCCT-GATTTTTCCAAAAATTACC
1 -ATTTTT-ACCCTAAACTTTTCC-AAAATTA-C
26177458 ATTTT
1 ATTTT
26177463 ACCTCCGAAC
Statistics
Matches: 206, Mismatches: 28, Indels: 61
0.70 0.09 0.21
Matches are distributed among these distances:
25 1 0.00
26 12 0.06
27 23 0.11
28 35 0.17
29 56 0.27
30 61 0.30
31 16 0.08
32 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.03, T:0.41
Consensus pattern (29 bp):
ATTTTTACCCTAAACTTTTCCAAAATTAC
Found at i:26177343 original size:57 final size:56
Alignment explanation
Indices: 26177180--26177520 Score: 318
Period size: 57 Copynumber: 5.9 Consensus size: 56
26177170 TTTGACCCTT
* * *
26177180 AAACTTTTCCAAAATTCCATTTTCGACCCTAAACTTTTCAAAAATTA-CATTTTTACCCTT
1 AAAC-TTTCCAAAATTCCATTTT-GACCCT-AATTTTTCCAAAATTACCA-TTTTACCC-C
* * *
26177240 AAACTTTCCAAAA--CTATTTTTACCCTGATTTTTCCAAAATTACCATTTTACCGCC
1 AAACTTTCCAAAATTCCATTTTGACCCTAATTTTTCCAAAATTACCATTTTACC-CC
* *
26177295 AAACTTTCCAAAATTCCAATTTGACCCTAATTTTT-CATAATTTACCATTTTACCCC
1 AAACTTTCCAAAATTCCATTTTGACCCTAATTTTTCCA-AAATTACCATTTTACCCC
* **
26177351 TAAACTTTCCAAAATTCGATTTTGACCTCATTTTTTTTCCAAAATTACCATTTTACCCTC
1 -AAACTTTCCAAAATTCCATTTTGACC-C-TAATTTTTCCAAAATTACCATTTTACCC-C
* * *
26177411 AAA-TTTCCAAAATTCAATTTTTAACCCTGATTTTTCCAAAAATTACCATTTTACCTCC
1 AAACTTTCCAAAATTCCA-TTTTGACCCTAATTTTTCC-AAAATTACCATTTTACC-CC
* * * *
26177469 GAAC-TTCTAAAAATTCCATTTTTGA-CATCGATTTTTCCAAAATTACCATTTT
1 AAACTTTC-CAAAATTCCA-TTTTGACCCT-AATTTTTCCAAAATTACCATTTT
26177521 GTCCCTGAGT
Statistics
Matches: 240, Mismatches: 25, Indels: 34
0.80 0.08 0.11
Matches are distributed among these distances:
55 33 0.14
56 12 0.05
57 69 0.29
58 54 0.22
59 65 0.27
60 7 0.03
ACGTcount: A:0.32, C:0.25, G:0.03, T:0.40
Consensus pattern (56 bp):
AAACTTTCCAAAATTCCATTTTGACCCTAATTTTTCCAAAATTACCATTTTACCCC
Found at i:26177521 original size:29 final size:28
Alignment explanation
Indices: 26177384--26177520 Score: 77
Period size: 29 Copynumber: 4.8 Consensus size: 28
26177374 GACCTCATTT
*
26177384 TTTTTCCAAAATTACCATTTTACCCTC-A
1 TTTTTCCAAAATTACCATTTTA-CATCGA
** * *
26177412 AATTTCCAAAATT-CAATTTTTA-ACCCTGA
1 TTTTTCCAAAATTACCA-TTTTACA-TC-GA
*
26177441 TTTTTCCAAAAATTACCATTTTACCTCCGA
1 TTTTTCC-AAAATTACCATTTTACAT-CGA
** *
26177471 -ACTTCTAAAAATT-CCATTTTTGACATCGA
1 TTTTTC-CAAAATTACCA-TTTT-ACATCGA
26177500 TTTTTCCAAAATTACCATTTT
1 TTTTTCCAAAATTACCATTTT
26177521 GTCCCTGAGT
Statistics
Matches: 79, Mismatches: 17, Indels: 25
0.65 0.14 0.21
Matches are distributed among these distances:
27 3 0.04
28 19 0.24
29 32 0.41
30 22 0.28
31 3 0.04
ACGTcount: A:0.32, C:0.23, G:0.03, T:0.42
Consensus pattern (28 bp):
TTTTTCCAAAATTACCATTTTACATCGA
Found at i:26179991 original size:18 final size:19
Alignment explanation
Indices: 26179965--26180007 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
26179955 GGACATGAAG
26179965 GAAAAGAAGAAAGAGAT-A
1 GAAAAGAAGAAAGAGATGA
* **
26179983 GAAAGGAAGCGAGAGATGA
1 GAAAAGAAGAAAGAGATGA
26180002 GAAAAG
1 GAAAAG
26180008 CACGACTGGA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.58, C:0.02, G:0.35, T:0.05
Consensus pattern (19 bp):
GAAAAGAAGAAAGAGATGA
Found at i:26183221 original size:43 final size:43
Alignment explanation
Indices: 26183160--26183472 Score: 464
Period size: 43 Copynumber: 7.2 Consensus size: 43
26183150 TTATGCGGAA
* * * *
26183160 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGACGCTTTTTCCGC
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
* * *
26183203 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTTTTCGC
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
* *
26183246 AAGTGCCGCTGAAGGCCATGTTCTTTAGCGTCGCTTTTATCCAC
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGC-TTTATCCAC
* * *
26183290 AAGCGCTGCTAAAGGCCATGTTCTTTCGCGGCGCTTTATCCAC
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
26183333 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
* * *
26183376 AAAGCGCCGTTAAAGGCCATGTTCTTTCGCGGCGCTTTATCCAC
1 -AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
*
26183420 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAA
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
26183463 AAGCGCCGCT
1 AAGCGCCGCT
26183473 AATATAACAG
Statistics
Matches: 245, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
43 170 0.69
44 75 0.31
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.27
Consensus pattern (43 bp):
AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
Found at i:26183321 original size:87 final size:86
Alignment explanation
Indices: 26183160--26183474 Score: 486
Period size: 87 Copynumber: 3.6 Consensus size: 86
26183150 TTATGCGGAA
* * * * *
26183160 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGACGCTTTTTCCGCAAGCGCCGCTGAAGGCCATGTT
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCACAAGCGCCGCTAAAGGCCATGTT
* * * *
26183225 CTTTAGCGGCGCTTTTTTCGC
66 CTTTCGCGGCGCTTTATCCAC
* * *
26183246 AAGTGCCGCTGAAGGCCATGTTCTTTAGCGTCGCTTTTATCCACAAGCGCTGCTAAAGGCCATGT
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGC-TTTATCCACAAGCGCCGCTAAAGGCCATGT
26183311 TCTTTCGCGGCGCTTTATCCAC
65 TCTTTCGCGGCGCTTTATCCAC
*
26183333 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCACAAAGCGCCGTTAAAGGCCATGT
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC-AAGCGCCGCTAAAGGCCATGT
26183398 TCTTTCGCGGCGCTTTATCCAC
65 TCTTTCGCGGCGCTTTATCCAC
*
26183420 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAAAAGCGCCGCTAA
1 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCACAAGCGCCGCTAA
26183475 TATAACAGAT
Statistics
Matches: 210, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
86 51 0.24
87 159 0.76
ACGTcount: A:0.19, C:0.29, G:0.24, T:0.27
Consensus pattern (86 bp):
AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCACAAGCGCCGCTAAAGGCCATGTT
CTTTCGCGGCGCTTTATCCAC
Found at i:26183325 original size:130 final size:130
Alignment explanation
Indices: 26183160--26183472 Score: 475
Period size: 130 Copynumber: 2.4 Consensus size: 130
26183150 TTATGCGGAA
* * *
26183160 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGACGCTTTTTCCGCAAGCGCCGCTGAAGGCCATGTT
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTATCCACAAGCGCCGCTGAAGGCCATGTT
* * * * * *
26183225 CTTTAGCGGCGCTTTTTTCGC-AAGTGCCGCTGAAGGCCATGTTCTTTAGCGTCGCTTTTATCCA
66 CTTTAGCGGCGCTTTATCCACAAAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGC-TTTATCCA
26183289 C
130 C
* *
26183290 AAGCGCTGCTAAAGGCCATGTTCTTTCGCGGCGCTTTATCCACAAGCGCCGCTGAAGGCCATGTT
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTATCCACAAGCGCCGCTGAAGGCCATGTT
* *
26183355 CTTTAGCGGCGCTTTATCCACAAAGCGCCGTTAAAGGCCATGTTCTTTCGCGGCGCTTTATCCAC
66 CTTTAGCGGCGCTTTATCCACAAAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
* *
26183420 AAGCGCCGCTGAAGGCCATGTTCTTTAGCGGCGCTTTATCCAAAAGCGCCGCT
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTATCCACAAGCGCCGCT
26183473 AATATAACAG
Statistics
Matches: 165, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
130 136 0.82
131 29 0.18
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.27
Consensus pattern (130 bp):
AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTATCCACAAGCGCCGCTGAAGGCCATGTT
CTTTAGCGGCGCTTTATCCACAAAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTATCCAC
Found at i:26183803 original size:11 final size:11
Alignment explanation
Indices: 26183787--26183824 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
26183777 TTCCTTCGCT
26183787 TGCCTCGCTGC
1 TGCCTCGCTGC
26183798 TGCCTC-C-GC
1 TGCCTCGCTGC
26183807 TTGCCTCGCTGC
1 -TGCCTCGCTGC
26183819 TGCCTC
1 TGCCTC
26183825 CACTTTAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
9 2 0.08
10 7 0.29
11 13 0.54
12 2 0.08
ACGTcount: A:0.00, C:0.47, G:0.24, T:0.29
Consensus pattern (11 bp):
TGCCTCGCTGC
Found at i:26183820 original size:24 final size:21
Alignment explanation
Indices: 26183773--26183825 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
26183763 CTTGTAGCCT
* *
26183773 CTGCTTCCTTCGCTTGCCTCG
1 CTGCTGCCTCCGCTTGCCTCG
26183794 CTGCTGCCTCCGCTTGCCTCG
1 CTGCTGCCTCCGCTTGCCTCG
26183815 CTGCTGCCTCC
1 CTGCTGCCTCC
26183826 ACTTTAAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.00, C:0.47, G:0.21, T:0.32
Consensus pattern (21 bp):
CTGCTGCCTCCGCTTGCCTCG
Found at i:26183925 original size:65 final size:66
Alignment explanation
Indices: 26183821--26183967 Score: 208
Period size: 66 Copynumber: 2.2 Consensus size: 66
26183811 CTCGCTGCTG
* *
26183821 CCTCCACTTTAAGTTGTATGTGGAGTTCTTCATA-TTTTTTTGAGACTCTGCTTCTCTCAATGCA
1 CCTCCTCTTTAAGTTGTATGTGGAGTTCATCATATTTTTTTTGAGACTCTGCTTCTCTCAATGCA
26183885 A
66 A
* * **
26183886 CCTCCTCTTTAAGTTTTA-GATGGAGTTCATCATATTTTTTTTGAGCCTCTGCTTCTCTCGTTGC
1 CCTCCTCTTTAAGTTGTATG-TGGAGTTCATCATATTTTTTTTGAGACTCTGCTTCTCTCAATGC
*
26183950 AG
65 AA
26183952 CCTCCTCTTTAAGTTG
1 CCTCCTCTTTAAGTTG
26183968 AGCAATTTGC
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
64 1 0.01
65 29 0.40
66 42 0.58
ACGTcount: A:0.17, C:0.23, G:0.16, T:0.44
Consensus pattern (66 bp):
CCTCCTCTTTAAGTTGTATGTGGAGTTCATCATATTTTTTTTGAGACTCTGCTTCTCTCAATGCA
A
Found at i:26189503 original size:18 final size:17
Alignment explanation
Indices: 26189480--26189853 Score: 147
Period size: 18 Copynumber: 21.4 Consensus size: 17
26189470 GGGTTGTTTT
26189480 TTTAATTAAATAATTAAA
1 TTTAATTAAATAATT-AA
*
26189498 TTTAATTAAAAAATTTAA
1 TTTAATTAAATAA-TTAA
* ** *
26189516 TATAATTATTTACTTTAA
1 TTTAATTAAATA-ATTAA
*
26189534 TATAATTAAATAATTAAA
1 TTTAATTAAATAATT-AA
26189552 TAATTAATTTAATATAATT-A
1 T--TTAA-TTAA-ATAATTAA
*
26189572 TTTACTTTAATATAATTAA
1 TTTA-ATTAA-ATAATTAA
*
26189591 -GTAATTAAATAATTAA
1 TTTAATTAAATAATTAA
26189607 TTTAA-T--ATAATT-A
1 TTTAATTAAATAATTAA
*
26189620 TTTACTTTAATATAATTAA
1 TTTA-ATTAA-ATAATTAA
* *
26189639 -GTAATTAAATATTTAA
1 TTTAATTAAATAATTAA
26189655 TTTAA-T--ATAATT-A
1 TTTAATTAAATAATTAA
*
26189668 TTTACTTTAATATAATTAA
1 TTTA-ATTAA-ATAATTAA
* *
26189687 -GTAATTAAATATTTAA
1 TTTAATTAAATAATTAA
26189703 TTTAA-T--ATAATT-A
1 TTTAATTAAATAATTAA
*
26189716 TTTACTTTAATATAATTAA
1 TTTA-ATTAA-ATAATTAA
* *
26189735 -GTAATTAAATATTTAA
1 TTTAATTAAATAATTAA
*
26189751 TTTAATATAATTATTTAGTTTAA
1 TTTAAT-TAA--A--TA-ATTAA
*
26189774 TATAATTAAATAATTATA
1 TTTAATTAAATAATTA-A
26189792 TCTTTTAAATTAATATAATT-A
1 ---TTT-AATTAA-ATAATTAA
*
26189813 TTTACTTTAACATAATTAA
1 TTTA-ATTAA-ATAATTAA
* *
26189832 -ATAATTAAATATTTAA
1 TTTAATTAAATAATTAA
26189848 TTTAAT
1 TTTAAT
26189854 ATAATTATTT
Statistics
Matches: 270, Mismatches: 40, Indels: 93
0.67 0.10 0.23
Matches are distributed among these distances:
13 15 0.06
14 16 0.06
15 3 0.01
16 39 0.14
17 43 0.16
18 100 0.37
19 7 0.03
20 7 0.03
21 7 0.03
22 17 0.06
23 16 0.06
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (17 bp):
TTTAATTAAATAATTAA
Found at i:26189566 original size:48 final size:48
Alignment explanation
Indices: 26189512--26190370 Score: 1256
Period size: 48 Copynumber: 17.8 Consensus size: 48
26189502 ATTAAAAAAT
* *
26189512 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATAATTAAT
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
* * *
26189560 TTAATATAATTATTTACTTTAATATAATTAAGTAATTAAATAATTAAT
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
* *
26189608 TTAATATAATTATTTACTTTAATATAATTAAGTAATTAAATATTTAAT
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
* *
26189656 TTAATATAATTATTTACTTTAATATAATTAAGTAATTAAATATTTAAT
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
* *
26189704 TTAATATAATTATTTACTTTAATATAATTAAGTAATTAAATATTTAAT
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
* * * *
26189752 TTAATATAATTATTTAGTTTAATATAATTAAATAATTATATCTTTTAAA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAAT-ATTTAAC
* *
26189801 TTAATATAATTATTTACTTTAACATAATTAAATAATTAAATATTTAAT
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
* * *
26189849 TTAATATAATTATTTACTTTCATATAATTAAATAATTAAATCTTTAGC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
* *
26189897 TTAATATAATTATTTACTTTAACATAATTAAATAATTAAATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAAT-ATTTAAC
*
26189946 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
* *
26189994 TTAATATAATTATTTACTTTAACATAATTAAATAATTAAATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAAT-ATTTAAC
*
26190043 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
* *
26190091 TTAATATAATTATTTACTTTAACATAATTAAATAATTAAATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAAT-ATTTAAC
* * *
26190140 TTAATATAATTATTTACTTTAATATAATTAAATATTTAATTCTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
* * * *
26190188 TTAATATAATTATTTACTTTAACATAATTAAATAATTAAATCTTGCAAG
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATT-TAAC
* * * *
26190237 TTATTATAATTATTTACTTTAATATAATTCAAT-A-TATATCTTTTAAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAAT-ATTTAAC
*
26190284 TTAATATAATTATTTACTTTAATATAAATAAATAATTAAATATTTAA-
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
* *
26190331 TTATTTATAATTATTTACTTTAATATAATTAAATATTTAA
1 TTA-ATATAATTATTTACTTTAATATAATTAAATAATTAA
26190371 TTAAATAATT
Statistics
Matches: 749, Mismatches: 53, Indels: 18
0.91 0.06 0.02
Matches are distributed among these distances:
47 39 0.05
48 496 0.66
49 214 0.29
ACGTcount: A:0.45, C:0.05, G:0.01, T:0.49
Consensus pattern (48 bp):
TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAAC
Found at i:26189581 original size:97 final size:93
Alignment explanation
Indices: 26189485--26190391 Score: 1049
Period size: 97 Copynumber: 9.4 Consensus size: 93
26189475 GTTTTTTTAA
* * *
26189485 TTAA-ATAATTAAATTTAATTAAAAAATTTAATATAATTATTTACTTTAATATAATTAAATAATT
1 TTAATATAATTAAA-TTAATTAAATAACTTAATATAATTATTTACTTTAACATAATTAAATAATT
*
26189549 AAATAATTAATTTAATATAATTATTTACT
65 AAATATTTAATTTAATATAATTATTTACT
* * * * *
26189578 TTAATATAATTAAGTAATTAAATAATTAATTTAATATAATTATTTACTTTAATATAATTAAGTAA
1 TTAATATAATT-A--AATTAATTAAATAACTTAATATAATTATTTACTTTAACATAATTAAATAA
26189643 TTAAATATTTAATTTAATATAATTATTTACT
63 TTAAATATTTAATTTAATATAATTATTTACT
* * * *
26189674 TTAATATAATT-AAGTAATTAAATATTTAATTTAATATAATTATTTACTTTAATATAATTAAGTA
1 TTAATATAATTAAATTAATT-AA-A--TAACTTAATATAATTATTTACTTTAACATAATTAAATA
*
26189738 ATTAAATATTTAATTTAATATAATTATTTAGT
62 ATTAAATATTTAATTTAATATAATTATTTACT
* *
26189770 TTAATATAATTAAA-TAATTATATCTTTTAAATTAATATAATTATTTACTTTAACATAATTAAAT
1 TTAATATAATTAAATTAATTA-A----ATAACTTAATATAATTATTTACTTTAACATAATTAAAT
26189834 AATTAAATATTTAATTTAATATAATTATTTACT
61 AATTAAATATTTAATTTAATATAATTATTTACT
* *
26189867 TTCATATAATTAAA-TAATTAAATCTTTAGCTTAATATAATTATTTACTTTAACATAATTAAATA
1 TTAATATAATTAAATTAATTAAA----TAACTTAATATAATTATTTACTTTAACATAATTAAATA
* *
26189931 ATTAAATCTTTTAACTTAATATAATTATTTACT
62 ATTAAAT-ATTTAATTTAATATAATTATTTACT
26189964 TTAATATAATTAAA-TAATTAAATCTTTAACTTAATATAATTATTTACTTTAACATAATTAAATA
1 TTAATATAATTAAATTAATTAAA----TAACTTAATATAATTATTTACTTTAACATAATTAAATA
* *
26190028 ATTAAATCTTTTAACTTAATATAATTATTTACT
62 ATTAAAT-ATTTAATTTAATATAATTATTTACT
26190061 TTAATATAATTAAA-TAATTAAATCTTTAACTTAATATAATTATTTACTTTAACATAATTAAATA
1 TTAATATAATTAAATTAATTAAA----TAACTTAATATAATTATTTACTTTAACATAATTAAATA
* *
26190125 ATTAAATCTTTTAACTTAATATAATTATTTACT
62 ATTAAAT-ATTTAATTTAATATAATTATTTACT
***
26190158 TTAATATAATTAAATATTTAATTCTTTAACTTAATATAATTATTTACTTTAACATAATTAAATAA
1 TTAATATAATT-AA-A-TTAATTAAATAACTTAATATAATTATTTACTTTAACATAATTAAATAA
* * * *
26190223 TTAAATCTTGCAAGTTATTATAATTATTTACT
63 TTAAATATT-TAATTTAATATAATTATTTACT
* ** * *
26190255 TTAATATAATTCAATATATATCT-TTTAACTTAATATAATTATTTACTTTAATATAAATAAATAA
1 TTAATATAATTAAAT-TA-AT-TAAATAACTTAATATAATTATTTACTTTAACATAATTAAATAA
*
26190319 TTAAATATTTAA-TTATTTATAATTATTTACT
63 TTAAATATTTAATTTA-ATATAATTATTTACT
*
26190350 TTAATATAATTAAATATTTAATTAAATAA-TTATATATGATTA
1 TTAATATAATT-AA-A-TTAATTAAATAACTTA-ATATAATTA
26190392 AATAATTAAA
Statistics
Matches: 744, Mismatches: 38, Indels: 61
0.88 0.05 0.07
Matches are distributed among these distances:
92 6 0.01
93 6 0.01
94 10 0.01
95 37 0.05
96 281 0.38
97 394 0.53
98 3 0.00
99 2 0.00
101 5 0.01
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.49
Consensus pattern (93 bp):
TTAATATAATTAAATTAATTAAATAACTTAATATAATTATTTACTTTAACATAATTAAATAATTA
AATATTTAATTTAATATAATTATTTACT
Found at i:26189887 original size:145 final size:145
Alignment explanation
Indices: 26189512--26190370 Score: 1287
Period size: 145 Copynumber: 5.9 Consensus size: 145
26189502 ATTAAAAAAT
* *
26189512 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATAATTAATTTAATATAATTATTTAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAACTTAATATAATTATTTAC
* * * *
26189577 TTTAATATAATTAAGTAATTAAATAATTAATTTAATATAATTATTTACTTTAATATAATTAAGTA
66 TTTAATATAATTAAATAATTAAATATTTAACTTAATATAATTATTTACTTTAATATAATTAAATA
* *
26189642 ATTAAAT-ATTTAAT
131 ATTAAATCTTTTAAC
* *
26189656 TTAATATAATTATTTACTTTAATATAATTAAGTAATTAAATATTTAATTTAATATAATTATTTAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAACTTAATATAATTATTTAC
* * *
26189721 TTTAATATAATTAAGTAATTAAATATTTAATTTAATATAATTATTTAGTTTAATATAATTAAATA
66 TTTAATATAATTAAATAATTAAATATTTAACTTAATATAATTATTTACTTTAATATAATTAAATA
* *
26189786 ATTATATCTTTTAAA
131 ATTAAATCTTTTAAC
* *
26189801 TTAATATAATTATTTACTTTAACATAATTAAATAATTAAATATTTAATTTAATATAATTATTTAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAACTTAATATAATTATTTAC
* * * *
26189866 TTTCATATAATTAAATAATTAAATCTTTAGCTTAATATAATTATTTACTTTAACATAATTAAATA
66 TTTAATATAATTAAATAATTAAATATTTAACTTAATATAATTATTTACTTTAATATAATTAAATA
26189931 ATTAAATCTTTTAAC
131 ATTAAATCTTTTAAC
*
26189946 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATCTTTAACTTAATATAATTATTTAC
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAACTTAATATAATTATTTAC
* *
26190011 TTTAACATAATTAAATAATTAAATCTTTTAACTTAATATAATTATTTACTTTAATATAATTAAAT
66 TTTAATATAATTAAATAATTAAAT-ATTTAACTTAATATAATTATTTACTTTAATATAATTAAAT
26190076 AATTAAATC-TTTAAC
130 AATTAAATCTTTTAAC
* *
26190091 TTAATATAATTATTTACTTTAACATAATTAAATAATTAAATCTTTTAACTTAATATAATTATTTA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAAT-ATTTAACTTAATATAATTATTTA
* * * *
26190156 CTTTAATATAATTAAATATTTAATTCTTTAACTTAATATAATTATTTACTTTAACATAATTAAAT
65 CTTTAATATAATTAAATAATTAAATATTTAACTTAATATAATTATTTACTTTAATATAATTAAAT
** *
26190221 AATTAAATCTTGCAAG
130 AATTAAATCTTTTAAC
* * * *
26190237 TTATTATAATTATTTACTTTAATATAATTCAAT-A-TATATCTTTTAACTTAATATAATTATTTA
1 TTAATATAATTATTTACTTTAATATAATTAAATAATTAAAT-ATTTAACTTAATATAATTATTTA
* *
26190300 CTTTAATATAAATAAATAATTAAATATTTAA-TTATTTATAATTATTTACTTTAATATAATTAAA
65 CTTTAATATAATTAAATAATTAAATATTTAACTTA-ATATAATTATTTACTTTAATATAATTAAA
*
26190364 TATTTAA
129 TAATTAA
26190371 TTAAATAATT
Statistics
Matches: 662, Mismatches: 48, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
143 3 0.00
144 219 0.33
145 317 0.48
146 123 0.19
ACGTcount: A:0.45, C:0.05, G:0.01, T:0.49
Consensus pattern (145 bp):
TTAATATAATTATTTACTTTAATATAATTAAATAATTAAATATTTAACTTAATATAATTATTTAC
TTTAATATAATTAAATAATTAAATATTTAACTTAATATAATTATTTACTTTAATATAATTAAATA
ATTAAATCTTTTAAC
Found at i:26190413 original size:22 final size:21
Alignment explanation
Indices: 26190312--26190417 Score: 84
Period size: 18 Copynumber: 5.3 Consensus size: 21
26190302 TTAATATAAA
26190312 TAAATAATTAAATATTT-AAT
1 TAAATAATTAAATATTTGAAT
* * * *
26190332 T-ATTTA-TAATTATTT-ACTT
1 TAAATAATTAAATATTTGA-AT
26190351 TAATATAATTAAATATTT-AAT
1 TAA-ATAATTAAATATTTGAAT
*
26190372 TAAATAATT--ATATATG-AT
1 TAAATAATTAAATATTTGAAT
26190390 TAAATAATTAAATATTTTGAAT
1 TAAATAATTAAATA-TTTGAAT
26190412 TAAATA
1 TAAATA
26190418 TTTGAGTTGT
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
18 25 0.37
19 5 0.07
20 11 0.16
21 9 0.13
22 17 0.25
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (21 bp):
TAAATAATTAAATATTTGAAT
Found at i:26190446 original size:4 final size:4
Alignment explanation
Indices: 26190437--26190466 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
26190427 TTTTTAATAT
26190437 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
26190467 GAGTTGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (4 bp):
TTAA
Found at i:26190492 original size:46 final size:48
Alignment explanation
Indices: 26190391--26190492 Score: 109
Period size: 46 Copynumber: 2.2 Consensus size: 48
26190381 ATATATGATT
* * * * * *
26190391 AAATAATTAAATATTTTGAATTAAATATTTGAGTTGTTTTTAATATTT
1 AAATAATTAAATATATTGAATTAAATAATTGAGTTGATTTAAATAATA
* * *
26190439 AATTAATTAATTA-ATT-AATTAATTAATTGAGTTGATTTAAATAATA
1 AAATAATTAAATATATTGAATTAAATAATTGAGTTGATTTAAATAATA
26190485 AAATAATT
1 AAATAATT
26190493 CAGTATTTGG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
46 31 0.70
47 2 0.05
48 11 0.25
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (48 bp):
AAATAATTAAATATATTGAATTAAATAATTGAGTTGATTTAAATAATA
Found at i:26190527 original size:8 final size:8
Alignment explanation
Indices: 26190525--26190550 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
26190515 ATTAAATATT
26190525 TAATTAAA
1 TAATTAAA
26190533 TAATTAAA
1 TAATTAAA
26190541 TAATTAAA
1 TAATTAAA
26190549 TA
1 TA
26190551 TTTTGAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAATTAAA
Found at i:26190530 original size:12 final size:12
Alignment explanation
Indices: 26190513--26190567 Score: 56
Period size: 16 Copynumber: 4.1 Consensus size: 12
26190503 GTTGTTTTAA
26190513 TAATTAAATATT
1 TAATTAAATATT
26190525 TAATTAAATAATT
1 TAATTAAAT-ATT
26190538 AAATAATTAAATATTT
1 ---TAATTAAATA-TT
26190554 TGAATTAAATATT
1 T-AATTAAATATT
26190567 T
1 T
26190568 GGGTTGTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
12 9 0.24
13 7 0.19
14 9 0.24
15 1 0.03
16 11 0.30
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (12 bp):
TAATTAAATATT
Found at i:26190545 original size:147 final size:149
Alignment explanation
Indices: 26190388--26190661 Score: 435
Period size: 151 Copynumber: 1.8 Consensus size: 149
26190378 ATTATATATG
**
26190388 ATTAAATAATTAAATATTTTGAATTAAATATTTGAGTTGTTTTTAATATTTA-AT-TAATTAATT
1 ATTAAATAATTAAATATTTTGAATTAAATATTTGAGTTGTTTTTAATATTTATATATAAAAAATT
** *
26190451 AATTAATTAATTAATTGAGTTGATTTAAATAATAAAATAATTCAGTATTTGGGTTGTTTTAATAA
66 AATTAATTAATTAATTGAGTTGATTTAAATAATAAAATAATGAAGTATTTCGGTTGTTTTAATAA
26190516 TTAAATATTTAATTAAATA
131 TTAAATATTTAATTAAATA
*
26190535 ATTAAATAATTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAATATTTATATAAATAAAAAA
1 ATTAAATAATTAAATATTTTGAATTAAATATTTGAGTTGTTTTTAATATTTATAT--ATAAAAAA
* * *
26190600 TTAATTAATTAATTAATTGGGTTGATTTAAGTAATTAAATAATGAAGTATTTCGGTTGTTTT
64 TTAATTAATTAATTAATTGAGTTGATTTAAATAATAAAATAATGAAGTATTTCGGTTGTTTT
26190662 TTCTAACTTA
Statistics
Matches: 114, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
147 51 0.45
148 2 0.02
151 61 0.54
ACGTcount: A:0.42, C:0.01, G:0.10, T:0.48
Consensus pattern (149 bp):
ATTAAATAATTAAATATTTTGAATTAAATATTTGAGTTGTTTTTAATATTTATATATAAAAAATT
AATTAATTAATTAATTGAGTTGATTTAAATAATAAAATAATGAAGTATTTCGGTTGTTTTAATAA
TTAAATATTTAATTAAATA
Found at i:26190907 original size:40 final size:40
Alignment explanation
Indices: 26190862--26190942 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
26190852 ATAACAAGCA
26190862 TCATAAACAAAAATAATAAAACAATCATAAGAACATTAAT
1 TCATAAACAAAAATAATAAAACAATCATAAGAACATTAAT
26190902 TCATAAACAAAAATAATAAAACAATCATAAGAACATTAAT
1 TCATAAACAAAAATAATAAAACAATCATAAGAACATTAAT
26190942 T
1 T
26190943 GAAAAGAGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.62, C:0.12, G:0.02, T:0.23
Consensus pattern (40 bp):
TCATAAACAAAAATAATAAAACAATCATAAGAACATTAAT
Found at i:26192669 original size:41 final size:41
Alignment explanation
Indices: 26192583--26192679 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 41
26192573 ATGTATAAAT
*
26192583 TTTAGCGGCGCTTTTCCATAAGCGCCGCAATTGCTTAGACT
1 TTTAGCGGCGCTTTTCCATAAGCGCCGCAATTGCTTAGACC
* * *
26192624 TTTAGCAGCGCTTTTCCATCAGCGCCGCTAATT-CTCT-TACC
1 TTTAGCGGCGCTTTTCCATAAGCGCCGC-AATTGCT-TAGACC
26192665 TTTAGCGGCGCTTTT
1 TTTAGCGGCGCTTTT
26192680 TTTATAAGCA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 44 0.90
42 5 0.10
ACGTcount: A:0.16, C:0.29, G:0.20, T:0.35
Consensus pattern (41 bp):
TTTAGCGGCGCTTTTCCATAAGCGCCGCAATTGCTTAGACC
Found at i:26194086 original size:18 final size:18
Alignment explanation
Indices: 26194063--26194097 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26194053 CATCCAATAC
*
26194063 TGTTCCTTGTAATTATTT
1 TGTTCCTTGTAAATATTT
26194081 TGTTCCTTGTAAATATT
1 TGTTCCTTGTAAATATT
26194098 CAACAATCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57
Consensus pattern (18 bp):
TGTTCCTTGTAAATATTT
Found at i:26194996 original size:15 final size:15
Alignment explanation
Indices: 26194976--26195014 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
26194966 TCCAACTAAA
26194976 GGCCCAAACCTAGAT
1 GGCCCAAACCTAGAT
26194991 GGCCCAAACCTAGAT
1 GGCCCAAACCTAGAT
26195006 GGCCCAAAC
1 GGCCCAAAC
26195015 TTTTACAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.33, C:0.36, G:0.21, T:0.10
Consensus pattern (15 bp):
GGCCCAAACCTAGAT
Found at i:26195662 original size:16 final size:15
Alignment explanation
Indices: 26195641--26195684 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
26195631 AATGAATCAG
26195641 TAATAATAATATTTAA
1 TAATAATAATA-TTAA
*
26195657 TAATAATAACATTAA
1 TAATAATAATATTAA
26195672 TCAATTAATAATA
1 T-AA-TAATAATA
26195685 ATATCAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 5 0.21
16 12 0.50
17 7 0.29
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATAATAATATTAA
Found at i:26195695 original size:23 final size:22
Alignment explanation
Indices: 26195645--26195696 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
26195635 AATCAGTAAT
*
26195645 AATAATATTTAATAATAATAAC
1 AATAATAATTAATAATAATAAC
* *
26195667 ATTAATCAATTAATAATAATATC
1 AATAAT-AATTAATAATAATAAC
26195690 AATAATA
1 AATAATA
26195697 TTATTTTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.37
Consensus pattern (22 bp):
AATAATAATTAATAATAATAAC
Found at i:26196891 original size:59 final size:59
Alignment explanation
Indices: 26196805--26197107 Score: 305
Period size: 59 Copynumber: 5.1 Consensus size: 59
26196795 CCAAAATCAT
* * *
26196805 ATTTTGACCCCTAAACTTTTCCAAAATTTCATTTTCGACCCTAAACTTTT-CAAAAATTA-C
1 ATTTTTACCCCCAAAC-TTTCCAAAATTCCATTTT-GACCCT-AACTTTTCCAAAAATTACC
* * ** * * *
26196865 ATTTTTACCCCTAAACTTTCTAAAATTTTAATTTTGACCCTAATTTTTCCAAAAGTTATC
1 ATTTTTACCCCCAAACTTTCCAAAA-TTCCATTTTGACCCTAACTTTTCCAAAAATTACC
* * *
26196925 -GTTTTACCCCCAAACTTTCCAAAATTCCAATTTTGA-CCTCGACTTTTCCAAAATTTACC
1 ATTTTTACCCCCAAACTTTCCAAAATTCC-ATTTTGACCCT-AACTTTTCCAAAAATTACC
*
26196984 A-TTTTACCCCCGAACTTTCCAAAATTCCATTTTTGACCCT-ACTTTTTCCAAAAATTACC
1 ATTTTTACCCCCAAACTTTCCAAAATTCCA-TTTTGACCCTAAC-TTTTCCAAAAATTACC
* * ** *
26197043 A-TTTTACCCCCGAACATTCCAAAATTCCATTTTTGACCCCGATTTTTCCAAAAATTACC
1 ATTTTTACCCCCAAACTTTCCAAAATTCCA-TTTTGACCCTAACTTTTCCAAAAATTACC
26197102 ATTTTT
1 ATTTTT
26197108 CCTCAAAGTG
Statistics
Matches: 213, Mismatches: 19, Indels: 22
0.84 0.07 0.09
Matches are distributed among these distances:
58 14 0.07
59 167 0.78
60 32 0.15
ACGTcount: A:0.30, C:0.27, G:0.04, T:0.39
Consensus pattern (59 bp):
ATTTTTACCCCCAAACTTTCCAAAATTCCATTTTGACCCTAACTTTTCCAAAAATTACC
Found at i:26196899 original size:29 final size:29
Alignment explanation
Indices: 26196785--26197009 Score: 131
Period size: 30 Copynumber: 7.6 Consensus size: 29
26196775 CCTAGAGGCT
* *
26196785 CCTAAACTGTCCAAAATCAT-ATTTTGACC
1 CCTAAACTTTCCAAAATTATAATTTT-ACC
*
26196814 CCTAAACTTTTCCAAAATT-TCATTTT-CGAC
1 CCTAAAC-TTTCCAAAATTATAATTTTAC--C
* * *
26196844 CCTAAACTTTTCAAAAATTACATTTTTACC
1 CCTAAAC-TTTCCAAAATTATAATTTTACC
* *
26196874 CCTAAACTTTCTAAAATTTTAATTTTGA-C
1 CCTAAACTTTCCAAAATTATAATTTT-ACC
** **
26196903 CCTAATTTTTCCAAAAGTTATCGTTTTACC
1 CCTAAACTTTCCAAAA-TTATAATTTTACC
* **
26196933 CCCAAACTTTCCAAAATTCCAATTTTGA--
1 CCTAAACTTTCCAAAATTATAATTTT-ACC
**
26196961 CCTCGACTTTTCCAAAATT-TACCATTTTACC
1 CCTAAAC-TTTCCAAAATTATA--ATTTTACC
**
26196992 CCCGAACTTTCCAAAATT
1 CCTAAACTTTCCAAAATT
26197010 CCATTTTTGA
Statistics
Matches: 151, Mismatches: 30, Indels: 29
0.72 0.14 0.14
Matches are distributed among these distances:
28 6 0.04
29 56 0.37
30 80 0.53
31 8 0.05
32 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.04, T:0.38
Consensus pattern (29 bp):
CCTAAACTTTCCAAAATTATAATTTTACC
Found at i:26196989 original size:118 final size:118
Alignment explanation
Indices: 26196805--26197106 Score: 358
Period size: 118 Copynumber: 2.5 Consensus size: 118
26196795 CCAAAATCAT
* * **
26196805 ATTTTGACCCCTAAACTTTTCCAAAATTTC-ATTTTCGACCCTAAACTTTT-CAAAAATTA-CAT
1 ATTTT-ACCCCCAAAC-TTTCCAAAATTCCAATTTT-GA-CCTCGACTTTTCCAAAAATTACCA-
* * ** * *
26196867 TTTTACCCCTAAACTTTCTAAAATTTTAATTTTGACCCTAATTTTTCCAAAAGTTATC
61 TTTTACCCCCAAACTTTCCAAAATTCCAATTTTGACCCTAATTTTTCCAAAAATTACC
* *
26196925 GTTTTACCCCCAAACTTTCCAAAATTCCAATTTTGACCTCGACTTTTCCAAAATTTACCATTTTA
1 ATTTTACCCCCAAACTTTCCAAAATTCCAATTTTGACCTCGACTTTTCCAAAAATTACCATTTTA
* * *
26196990 CCCCCGAACTTTCCAAAATTCCATTTTTGACCCTACTTTTTCCAAAAATTACC
66 CCCCCAAACTTTCCAAAATTCCAATTTTGACCCTAATTTTTCCAAAAATTACC
* * * * *
26197043 ATTTTACCCCCGAACATTCCAAAATTCCATTTTTGACCCCGATTTTTCCAAAAATTACCATTTT
1 ATTTTACCCCCAAACTTTCCAAAATTCCAATTTTGACCTCGACTTTTCCAAAAATTACCATTTT
26197107 TCCTCAAAGT
Statistics
Matches: 157, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
117 9 0.06
118 128 0.82
119 16 0.10
120 4 0.03
ACGTcount: A:0.30, C:0.27, G:0.04, T:0.39
Consensus pattern (118 bp):
ATTTTACCCCCAAACTTTCCAAAATTCCAATTTTGACCTCGACTTTTCCAAAAATTACCATTTTA
CCCCCAAACTTTCCAAAATTCCAATTTTGACCCTAATTTTTCCAAAAATTACC
Found at i:26197032 original size:29 final size:29
Alignment explanation
Indices: 26196818--26197107 Score: 134
Period size: 30 Copynumber: 9.8 Consensus size: 29
26196808 TTGACCCCTA
* *
26196818 AACTTTTCCAAAATT-TCATTTTCGACCC
1 AACTTTTCCAAAATTACCATTTTTGACCC
*
26196846 TAAACTTTTCAAAAATTA-CATTTTT-ACCCC
1 --AACTTTTCCAAAATTACCATTTTTGA-CCC
* ** *
26196876 TAAAC-TTTCTAAAATT-TTAATTTTGACCC
1 --AACTTTTCCAAAATTACCATTTTTGACCC
* * * ***
26196905 TAATTTTTCCAAAAGTTATCGTTTTACCCCC
1 -AACTTTTCCAAAA-TTACCATTTTTGACCC
*
26196936 AAAC-TTTCCAAAATT-CCAATTTTGACCTC
1 -AACTTTTCCAAAATTACCATTTTTGACC-C
* ***
26196965 GACTTTTCCAAAATTTACCATTTTACCCCC
1 AACTTTTCCAAAA-TTACCATTTTTGACCC
26196995 GAAC-TTTCCAAAATT-CCATTTTTGACCC
1 -AACTTTTCCAAAATTACCATTTTTGACCC
* ***
26197023 TACTTTTTCCAAAAATTACCATTTTACCCCC
1 AAC-TTTTCC-AAAATTACCATTTTTGACCC
*
26197054 GAAC-ATTCCAAAATT-CCATTTTTGACCCC
1 -AACTTTTCCAAAATTACCATTTTTGA-CCC
* *
26197083 GATTTTTCCAAAAATTACCATTTTT
1 AACTTTTCC-AAAATTACCATTTTT
26197108 CCTCAAAGTG
Statistics
Matches: 196, Mismatches: 43, Indels: 41
0.70 0.15 0.15
Matches are distributed among these distances:
27 2 0.01
28 28 0.14
29 59 0.30
30 68 0.35
31 37 0.19
32 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.39
Consensus pattern (29 bp):
AACTTTTCCAAAATTACCATTTTTGACCC
Found at i:26202157 original size:11 final size:11
Alignment explanation
Indices: 26202120--26202168 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
26202110 GATACAATTT
26202120 AAAATAAAATA
1 AAAATAAAATA
* * *
26202131 AACAACACAGTA
1 AA-AATAAAATA
26202143 AAAATAAAATA
1 AAAATAAAATA
*
26202154 AAAATAAATTA
1 AAAATAAAATA
26202165 AAAA
1 AAAA
26202169 GATAAAGTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
11 22 0.73
12 8 0.27
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.16
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:26202168 original size:23 final size:23
Alignment explanation
Indices: 26202120--26202168 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
26202110 GATACAATTT
*
26202120 AAAATAAAATAAACAACACAGTA
1 AAAATAAAATAAACAACAAAGTA
* *
26202143 AAAATAAAATAAA-AATAAATTA
1 AAAATAAAATAAACAACAAAGTA
26202165 AAAA
1 AAAA
26202169 GATAAAGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.16
Consensus pattern (23 bp):
AAAATAAAATAAACAACAAAGTA
Found at i:26205773 original size:22 final size:22
Alignment explanation
Indices: 26205731--26205773 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26205721 AAATTTTAAA
*
26205731 ATATATTTTTAATTGATATTTT
1 ATATATTTTTAATTGAAATTTT
26205753 ATATATTTTATAATT-AAATTT
1 ATATATTTT-TAATTGAAATTT
26205774 AAATAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
ATATATTTTTAATTGAAATTTT
Found at i:26206333 original size:21 final size:21
Alignment explanation
Indices: 26206300--26206352 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
26206290 CCCTAAACTC
*
26206300 AAAATCTAAAACCCCAAACTCAT
1 AAAATC-ATAACCCCAAAC-CAT
* *
26206323 AAAA-CATAACCTCAAACCCT
1 AAAATCATAACCCCAAACCAT
26206343 AAAATCATAA
1 AAAATCATAA
26206353 TATTGAACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 6 0.23
21 15 0.58
22 1 0.04
23 4 0.15
ACGTcount: A:0.55, C:0.28, G:0.00, T:0.17
Consensus pattern (21 bp):
AAAATCATAACCCCAAACCAT
Found at i:26206391 original size:21 final size:21
Alignment explanation
Indices: 26206365--26206425 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
26206355 TTGAACTTTG
26206365 AACCCCAAACTCATAACCCGT
1 AACCCCAAACTCATAACCCGT
* * **
26206386 AACCCCAAACTCTTAAACATT
1 AACCCCAAACTCATAACCCGT
**
26206407 AAATCCAAACTCATAACCC
1 AACCCCAAACTCATAACCC
26206426 TAGATCCTTG
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.43, C:0.38, G:0.02, T:0.18
Consensus pattern (21 bp):
AACCCCAAACTCATAACCCGT
Found at i:26207010 original size:6 final size:6
Alignment explanation
Indices: 26207001--26207101 Score: 82
Period size: 6 Copynumber: 17.2 Consensus size: 6
26206991 TAAAATGATT
** * *
26207001 TTTAAA TTTATT TTTAAA ATTAAA TTT-AC TTTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* ** * * *
26207048 TTCATT TTTAAA TTTAAA TTT-AT TTTAAA TTTTAA TTT-AG TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
26207094 TTTGAAA T
1 TTT-AAA T
26207102 AATTTTAAAA
Statistics
Matches: 72, Mismatches: 19, Indels: 7
0.73 0.19 0.07
Matches are distributed among these distances:
5 12 0.17
6 56 0.78
7 4 0.06
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:26207010 original size:24 final size:24
Alignment explanation
Indices: 26206977--26207069 Score: 80
Period size: 24 Copynumber: 3.7 Consensus size: 24
26206967 TTTGGGTCAA
* *
26206977 TTTT-AATTTAAGTTTAAAATGAT
1 TTTTAAATTTAAATTTAAAATAAT
**
26207000 TTTTAAATTTATTTTTAAAATTAAATT
1 TTTTAAATTTAAATTTAAAA-T-AA-T
* *
26207027 TACTTTAAATTTAAATTTAAATTCAT
1 T--TTTAAATTTAAATTTAAAATAAT
26207053 TTTTAAATTTAAATTTA
1 TTTTAAATTTAAATTTA
26207070 TTTTAAATTT
Statistics
Matches: 57, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
23 4 0.07
24 29 0.51
25 1 0.02
26 3 0.05
27 3 0.05
28 1 0.02
29 16 0.28
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (24 bp):
TTTTAAATTTAAATTTAAAATAAT
Found at i:26207034 original size:41 final size:41
Alignment explanation
Indices: 26206989--26207076 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
26206979 TTAATTTAAG
** *
26206989 TTTAAAATGATTTTTAAATTTATTTTTAAAATTAAATTTAC
1 TTTAAAATGAAATTTAAATTCATTTTTAAAATTAAATTTAC
* * * *
26207030 TTTAAATTTAAATTTAAATTCATTTTTAAATTTAAATTTAT
1 TTTAAAATGAAATTTAAATTCATTTTTAAAATTAAATTTAC
26207071 TTTAAA
1 TTTAAA
26207077 TTTTAATTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (41 bp):
TTTAAAATGAAATTTAAATTCATTTTTAAAATTAAATTTAC
Found at i:26207035 original size:17 final size:18
Alignment explanation
Indices: 26207002--26207045 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
26206992 AAAATGATTT
*
26207002 TTAAATTTATTTTTAAAA
1 TTAAATTTATCTTTAAAA
*
26207020 TTAAATTTA-CTTTAAAT
1 TTAAATTTATCTTTAAAA
26207037 TTAAATTTA
1 TTAAATTTA
26207046 AATTCATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (18 bp):
TTAAATTTATCTTTAAAA
Found at i:26207075 original size:17 final size:17
Alignment explanation
Indices: 26207036--26207116 Score: 92
Period size: 17 Copynumber: 4.7 Consensus size: 17
26207026 TTACTTTAAA
*
26207036 TTTAAATTTAAATTCATT
1 TTTAAATTTAAATTTA-T
26207054 TTTAAATTTAAATTTAT
1 TTTAAATTTAAATTTAT
* *
26207071 TTTAAATTTTAATTTAG
1 TTTAAATTTAAATTTAT
*
26207088 TTTAAATTTGAAA-TAAT
1 TTTAAATTT-AAATTTAT
*
26207105 TTTAAAATTAAA
1 TTTAAATTTAAA
26207117 ACTAAAAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
16 3 0.05
17 35 0.64
18 17 0.31
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.53
Consensus pattern (17 bp):
TTTAAATTTAAATTTAT
Found at i:26207077 original size:41 final size:41
Alignment explanation
Indices: 26207001--26207086 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 41
26206991 TAAAATGATT
*
26207001 TTTAAATTTATTTTTAAAATTAAATTTACTTTAAATTTAAA
1 TTTAAATTCATTTTTAAAATTAAATTTACTTTAAATTTAAA
* * *
26207042 TTTAAATTCATTTTTAAATTTAAATTTATTTTAAATTTTAA
1 TTTAAATTCATTTTTAAAATTAAATTTACTTTAAATTTAAA
26207083 TTTA
1 TTTA
26207087 GTTTAAATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (41 bp):
TTTAAATTCATTTTTAAAATTAAATTTACTTTAAATTTAAA
Found at i:26208812 original size:162 final size:162
Alignment explanation
Indices: 26208634--26208967 Score: 533
Period size: 162 Copynumber: 2.1 Consensus size: 162
26208624 TTCAATTTAG
* * *
26208634 TCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCACTTTTTGGCTTATTTCTGTATCTA
1 TCCTTTAACTGTTTGACTGCACCAAAGGCTGCCACGTGTCACTTTTTGGCTTATTTATGTATCTA
* * * **
26208699 GTCCCTATCTTTTTTAATTTGTTTCAATTTAATCCTTAAATCAATTTTTATTTAATTACAAAATT
66 GTCCCTATCATTTTTAATTTATTTCAATTTAATCCTTAAATCAACTTCCATTTAATTACAAAATT
26208764 GGCCCAAGAATTTTTCAAGATTTATAAATTAA
131 GGCCCAAGAATTTTTCAAGATTTATAAATTAA
* *
26208796 TTCTTTAACTGTTTGACTGCACCAAAGGCTGCCACGTGTCACTTTTTGGCTTATTTATGTATTTA
1 TCCTTTAACTGTTTGACTGCACCAAAGGCTGCCACGTGTCACTTTTTGGCTTATTTATGTATCTA
* *
26208861 GTCCCTGTCATTTTTAATTTATTTTAATTTAATCCTTAAATCAACTTCCATTTAATTACAAAATT
66 GTCCCTATCATTTTTAATTTATTTCAATTTAATCCTTAAATCAACTTCCATTTAATTACAAAATT
* * *
26208926 GGCCCGAGAATTTTTCAGGATTTATAAATTAG
131 GGCCCAAGAATTTTTCAAGATTTATAAATTAA
26208958 TCCTTTAACT
1 TCCTTTAACT
26208968 TCTGGGTACC
Statistics
Matches: 156, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
162 156 1.00
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.44
Consensus pattern (162 bp):
TCCTTTAACTGTTTGACTGCACCAAAGGCTGCCACGTGTCACTTTTTGGCTTATTTATGTATCTA
GTCCCTATCATTTTTAATTTATTTCAATTTAATCCTTAAATCAACTTCCATTTAATTACAAAATT
GGCCCAAGAATTTTTCAAGATTTATAAATTAA
Found at i:26209103 original size:59 final size:59
Alignment explanation
Indices: 26209038--26209355 Score: 469
Period size: 59 Copynumber: 5.4 Consensus size: 59
26209028 CCTAGACTAT
* * * *
26209038 CCAAAAATTACCATTTTACCCCCAAACTTTCTAAAATTCCATTTTTAACCCCAATTTTA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
26209097 TCAAAAATTACCATTTTACCCCCGAATTTTCCAAAATTCCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
** * * * *
26209156 CCAAAAATTACCATTTTACCCTTGAACTTTACAAAATTCTATTTTTAGCCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
26209215 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
*
26209274 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAA-TCCTATCTTTAACCCC-AGTTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCC-ATTTTTAACCCCGA-TTTCA
*
26209333 CCAAAAATCACCATTTTACCCCC
1 CCAAAAATTACCATTTTACCCCC
26209356 TCCCCCCGAA
Statistics
Matches: 235, Mismatches: 22, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
58 4 0.02
59 231 0.98
ACGTcount: A:0.33, C:0.30, G:0.03, T:0.34
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:26209320 original size:29 final size:28
Alignment explanation
Indices: 26209041--26209325 Score: 165
Period size: 29 Copynumber: 9.7 Consensus size: 28
26209031 AGACTATCCA
* * *
26209041 AAAATTACCATTTTACCCCCAAACTTTCT
1 AAAATT-CCATTTTAACCCCGAACTTTCC
* *
26209070 AAAATTCCATTTTTAACCCC-AATTTTATCA
1 AAAATTCCA-TTTTAACCCCGAA-CTT-TCC
* *
26209100 AAAATTACCATTTTACCCCCGAATTTTCC
1 AAAATT-CCATTTTAACCCCGAACTTTCC
*
26209129 AAAATTCCATTTTTAACCTCG-A-TTTCACC
1 AAAATTCCA-TTTTAACCCCGAACTTT--CC
* *
26209158 AAAAATTACCATTTT-ACCCTTGAACTTTAC
1 -AAAATT-CCATTTTAACCC-CGAACTTTCC
* * *
26209188 AAAATTCTATTTTTAGCCTCG-A-TTTCACC
1 AAAATTCCA-TTTTAACCCCGAACTTT--CC
*
26209217 AAAAATTACCATTTTACCCCCGAACTTTCC
1 -AAAATT-CCATTTTAACCCCGAACTTTCC
26209247 AAAATTCCATTTTTAACCCCG-A-TTTCACC
1 AAAATTCCA-TTTTAACCCCGAACTTT--CC
*
26209276 AAAAATTACCATTTTACCCCCGAACTTTCC
1 -AAAATT-CCATTTTAACCCCGAACTTTCC
26209306 AAAA-TCCTATCTTTAACCCC
1 AAAATTCC-AT-TTTAACCCC
26209326 AGTTTCACCA
Statistics
Matches: 205, Mismatches: 21, Indels: 60
0.72 0.07 0.21
Matches are distributed among these distances:
27 11 0.05
28 19 0.09
29 81 0.40
30 69 0.34
31 16 0.08
32 9 0.04
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.35
Consensus pattern (28 bp):
AAAATTCCATTTTAACCCCGAACTTTCC
Found at i:26209353 original size:29 final size:30
Alignment explanation
Indices: 26209210--26209354 Score: 94
Period size: 29 Copynumber: 4.9 Consensus size: 30
26209200 TTAGCCTCGA
*
26209210 TTTCACCAAAAATTACCATTTTACCCCCGAAC
1 TTTCACCAAAAATCACCATTTTA-CCCC-AAC
* *
26209242 TTT--CC-AAAAT-TCCATTTTTAACCCCGA-
1 TTTCACCAAAAATCACCA-TTTT-ACCCCAAC
*
26209269 TTTCACCAAAAATTACCATTTTACCCCCGAAC
1 TTTCACCAAAAATCACCATTTTA-CCCC-AAC
* *
26209301 TTT--CC-AAAATC-CTATCTTTAACCCC-AG
1 TTTCACCAAAAATCACCAT-TTT-ACCCCAAC
26209328 TTTCACCAAAAATCACCATTTTACCCC
1 TTTCACCAAAAATCACCATTTTACCCC
26209355 CTCCCCCCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 33
0.69 0.06 0.25
Matches are distributed among these distances:
27 7 0.08
28 7 0.08
29 35 0.39
30 28 0.31
31 7 0.08
32 6 0.07
ACGTcount: A:0.32, C:0.34, G:0.03, T:0.31
Consensus pattern (30 bp):
TTTCACCAAAAATCACCATTTTACCCCAAC
Done.