Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 78 of 171
Found at i:26587719 original size:3 final size:3
Alignment explanation
Indices: 26587711--26587741 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
26587701 TAAAACTGAT
*
26587711 TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26587742 ATAGGTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26588894 original size:6 final size:6
Alignment explanation
Indices: 26588885--26588981 Score: 83
Period size: 6 Copynumber: 16.5 Consensus size: 6
26588875 TTAGGTGGGT
* * *
26588885 TTTAAA TTT-AT TTCTAAA ATTAAA TTT-AC TTTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TT-TAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* ** * **
26588932 TTCATT TTTAAA TTTAAA TTT-AT TTTAAA TTTAAA TTTACT TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
26588979 TTT
1 TTT
26588982 GAGATAATTT
Statistics
Matches: 69, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
5 11 0.16
6 56 0.81
7 2 0.03
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:26588930 original size:41 final size:41
Alignment explanation
Indices: 26588885--26588970 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 41
26588875 TTAGGTGGGT
*
26588885 TTTAAATTTATTTCTAAAATTAAATTTACTTTAAATTTAAA
1 TTTAAATTCATTTCTAAAATTAAATTTACTTTAAATTTAAA
* * *
26588926 TTTAAATTCATTTTTAAATTTAAATTTATTTTAAATTTAAA
1 TTTAAATTCATTTCTAAAATTAAATTTACTTTAAATTTAAA
26588967 TTTA
1 TTTA
26588971 CTTTTAAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (41 bp):
TTTAAATTCATTTCTAAAATTAAATTTACTTTAAATTTAAA
Found at i:26588992 original size:35 final size:35
Alignment explanation
Indices: 26588904--26588995 Score: 105
Period size: 35 Copynumber: 2.6 Consensus size: 35
26588894 ATTTCTAAAA
** * *
26588904 TTAAATTTACTTTAAATTTAAATTTAAATTCATTT
1 TTAAATTTAAATTAATTTTAAATTTAAATTCACTT
* *
26588939 TTAAATTTAAATTTATTTTAAATTTAAATTTACTT
1 TTAAATTTAAATTAATTTTAAATTTAAATTCACTT
*
26588974 TTAAATTTGAGA-TAATTTTAAA
1 TTAAATTT-AAATTAATTTTAAA
26588996 ACTTAAAATT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
35 46 0.96
36 2 0.04
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.53
Consensus pattern (35 bp):
TTAAATTTAAATTAATTTTAAATTTAAATTCACTT
Found at i:26589807 original size:36 final size:37
Alignment explanation
Indices: 26589737--26589812 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 37
26589727 ATTGCATCAG
*
26589737 TATTAATAACAATAATGATAATATATTGATATTAATAA
1 TATTAATAAC-ATAATAATAATATATTGATATTAATAA
*
26589775 TATTAATAAC-TAATAATAATAT-TTTATAATTAATAA
1 TATTAATAACATAATAATAATATATTGAT-ATTAATAA
26589811 TA
1 TA
26589813 ATATTAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 4 0.11
36 21 0.60
38 10 0.29
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (37 bp):
TATTAATAACATAATAATAATATATTGATATTAATAA
Found at i:26589808 original size:20 final size:20
Alignment explanation
Indices: 26589769--26589817 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
26589759 ATATTGATAT
26589769 TAATAATA-TTAATAACTAA
1 TAATAATATTTAATAACTAA
* *
26589788 TAATAATATTTTATAATTAA
1 TAATAATATTTAATAACTAA
26589808 TAATAATATT
1 TAATAATATT
26589818 AATTAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TAATAATATTTAATAACTAA
Found at i:26590918 original size:29 final size:29
Alignment explanation
Indices: 26590876--26591074 Score: 220
Period size: 30 Copynumber: 6.7 Consensus size: 29
26590866 AAGGTCCCTA
*
26590876 AACTGTCCAAAAATTATA-TTTTAACCTCG
1 AACT-TCCAAAAATTACATTTTTAACCTCG
* * * *
26590905 AACTTCTCCAAAATTACATTTTTGACCCCAA
1 AACTTC-CAAAAATTACATTTTTAACCTC-G
* *
26590936 AACTTCTAAAAATTACATTTTTAACCCCG
1 AACTTCCAAAAATTACATTTTTAACCTCG
*
26590965 AACTTCCAAAAATTCCATTTTTAACCTCG
1 AACTTCCAAAAATTACATTTTTAACCTCG
*
26590994 AAACTTCCAAAAATTACATTTTTACCCTCG
1 -AACTTCCAAAAATTACATTTTTAACCTCG
* * *
26591024 AACTCCCAAAAATTCCATTTTTAACCTCCA
1 AACTTCCAAAAATTACATTTTTAACCT-CG
* *
26591054 AACTTCCAAATATTCCATTTT
1 AACTTCCAAAAATTACATTTT
26591075 AGCCCCAAAC
Statistics
Matches: 145, Mismatches: 20, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
28 2 0.01
29 63 0.43
30 74 0.51
31 6 0.04
ACGTcount: A:0.36, C:0.27, G:0.03, T:0.34
Consensus pattern (29 bp):
AACTTCCAAAAATTACATTTTTAACCTCG
Found at i:26590978 original size:59 final size:58
Alignment explanation
Indices: 26590875--26591185 Score: 306
Period size: 59 Copynumber: 5.3 Consensus size: 58
26590865 GAAGGTCCCT
* * * * *
26590875 AAACTGTCCAAAAATTATATTTTAACCTCGAACTTCTCCAAAATTACATTTTTGACCCCA
1 AAACT-TCCAAAAATTACATTTTAACCCCGAACTTC-CAAAAATTCCATTTTTAACCCCA
* * *
26590935 AAACTTCTAAAAATTACATTTTTAACCCCGAACTTCCAAAAATTCCATTTTTAACCTCG
1 AAACTTCCAAAAATTACA-TTTTAACCCCGAACTTCCAAAAATTCCATTTTTAACCCCA
* *
26590994 AAACTTCCAAAAATTACATTTTTACCCTCGAACTCCCAAAAATTCCATTTTTAACCTCC-
1 AAACTTCCAAAAATTACATTTTAACCC-CGAACTTCCAAAAATTCCATTTTTAACC-CCA
* * * * * * * * *
26591053 AAACTTCCAAATATTCCATTTTAGCCCCAAACATCTAAATATTCCATTTTTTACCCTA
1 AAACTTCCAAAAATTACATTTTAACCCCGAACTTCCAAAAATTCCATTTTTAACCCCA
* * * * *
26591111 AAACTTTC-AAAATTATCATTTTACCCCCGAA-TGTCCAAAAACTCCATTTTTGA-CCCG
1 AAACTTCCAAAAATTA-CATTTTAACCCCGAACT-TCCAAAAATTCCATTTTTAACCCCA
*
26591168 AAACTTTCAAAAATTACA
1 AAACTTCCAAAAATTACA
26591186 AAATAACCCT
Statistics
Matches: 209, Mismatches: 35, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
57 18 0.09
58 73 0.35
59 96 0.46
60 22 0.11
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.33
Consensus pattern (58 bp):
AAACTTCCAAAAATTACATTTTAACCCCGAACTTCCAAAAATTCCATTTTTAACCCCA
Found at i:26591075 original size:29 final size:29
Alignment explanation
Indices: 26590875--26591185 Score: 238
Period size: 29 Copynumber: 10.6 Consensus size: 29
26590865 GAAGGTCCCT
* *
26590875 AAACTGTCCAAAAATTATA-TTTTAACCTC
1 AAACT-TCCAAAAATTACATTTTTAACCCC
* * *
26590904 GAACTTCTCCAAAATTACATTTTTGACCCC
1 AAACTTC-CAAAAATTACATTTTTAACCCC
*
26590934 AAAACTTCTAAAAATTACATTTTTAACCCC
1 -AAACTTCCAAAAATTACATTTTTAACCCC
* * *
26590964 GAACTTCCAAAAATTCCATTTTTAACCTCG
1 AAACTTCCAAAAATTACATTTTTAACC-CC
26590994 AAACTTCCAAAAATTACATTTTT-ACCCTC
1 AAACTTCCAAAAATTACATTTTTAACCC-C
* * *
26591023 GAACTCCCAAAAATTCCATTTTTAACCTCC
1 AAACTTCCAAAAATTACATTTTTAACC-CC
* * *
26591053 AAACTTCCAAATATTCCA-TTTTAGCCCC
1 AAACTTCCAAAAATTACATTTTTAACCCC
* * * * * *
26591081 AAACATCTAAATATTCCATTTTTTACCCTA
1 AAACTTCCAAAAATTACATTTTTAACCC-C
* *
26591111 AAACTTTC-AAAATTATCA-TTTTACCCCC
1 AAACTTCCAAAAATTA-CATTTTTAACCCC
* * * * *
26591139 GAA-TGTCCAAAAACTCCATTTTTGACCCG
1 AAACT-TCCAAAAATTACATTTTTAACCCC
*
26591168 AAACTTTCAAAAATTACA
1 AAACTTCCAAAAATTACA
26591186 AAATAACCCT
Statistics
Matches: 221, Mismatches: 47, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
27 1 0.00
28 27 0.12
29 110 0.50
30 76 0.34
31 7 0.03
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.33
Consensus pattern (29 bp):
AAACTTCCAAAAATTACATTTTTAACCCC
Found at i:26592856 original size:17 final size:17
Alignment explanation
Indices: 26592834--26592872 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
26592824 CTCCACCTTG
*
26592834 ACAAGAATTCTCTA-CGA
1 ACAAGAACTCTC-AGCGA
26592851 ACAAGAACTCTCAGCGA
1 ACAAGAACTCTCAGCGA
26592868 ACAAG
1 ACAAG
26592873 TTCTCCACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.44, C:0.26, G:0.15, T:0.15
Consensus pattern (17 bp):
ACAAGAACTCTCAGCGA
Found at i:26597021 original size:22 final size:22
Alignment explanation
Indices: 26596993--26597037 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
26596983 GAAGAAAGAA
26596993 CCTTCCCTTTAAACTAAACTTG
1 CCTTCCCTTTAAACTAAACTTG
26597015 CCTTCCCTTTAAACTAAACTTG
1 CCTTCCCTTTAAACTAAACTTG
26597037 C
1 C
26597038 TATATTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.33, G:0.04, T:0.36
Consensus pattern (22 bp):
CCTTCCCTTTAAACTAAACTTG
Found at i:26597228 original size:25 final size:25
Alignment explanation
Indices: 26597159--26597248 Score: 65
Period size: 25 Copynumber: 3.6 Consensus size: 25
26597149 CTCCATGTTT
* * * *
26597159 CTTTTCTTTGCTTTGCTGTACATTA
1 CTTTGCTTTGCTTTACTTTACAATA
* * * *
26597184 CTCTGCTTTACTTTATTTTATAATA
1 CTTTGCTTTGCTTTACTTTACAATA
* **
26597209 CTTTGCTTTGCTTTCCTTTACTTTA
1 CTTTGCTTTGCTTTACTTTACAATA
26597234 -TATTGCTTTGCTTTA
1 CT-TTGCTTTGCTTTA
26597249 TATTACTTTG
Statistics
Matches: 48, Mismatches: 16, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
24 1 0.02
25 47 0.98
ACGTcount: A:0.14, C:0.19, G:0.09, T:0.58
Consensus pattern (25 bp):
CTTTGCTTTGCTTTACTTTACAATA
Found at i:26597228 original size:30 final size:30
Alignment explanation
Indices: 26597187--26597247 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
26597177 TACATTACTC
*
26597187 TGCTTTACTTTATTTTATAATACTTTGCTT
1 TGCTTTACTTTACTTTATAATACTTTGCTT
* * *
26597217 TGCTTTCCTTTACTTTATATTGCTTTGCTT
1 TGCTTTACTTTACTTTATAATACTTTGCTT
26597247 T
1 T
26597248 ATATTACTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.15, C:0.16, G:0.08, T:0.61
Consensus pattern (30 bp):
TGCTTTACTTTACTTTATAATACTTTGCTT
Found at i:26597242 original size:15 final size:15
Alignment explanation
Indices: 26597191--26597257 Score: 55
Period size: 15 Copynumber: 4.5 Consensus size: 15
26597181 TTACTCTGCT
*
26597191 TTACTTTATTTTATA
1 TTACTTTACTTTATA
* * *
26597206 ATACTTTGCTTTGCT-
1 TTACTTTACTTT-ATA
*
26597221 TTCCTTTACTTTATA
1 TTACTTTACTTTATA
* *
26597236 TTGCTTTGCTTTATA
1 TTACTTTACTTTATA
26597251 TTACTTT
1 TTACTTT
26597258 GGTTTGCTTA
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
14 1 0.03
15 37 0.95
16 1 0.03
ACGTcount: A:0.18, C:0.15, G:0.06, T:0.61
Consensus pattern (15 bp):
TTACTTTACTTTATA
Found at i:26597258 original size:15 final size:15
Alignment explanation
Indices: 26597200--26597258 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
26597190 TTTACTTTAT
*
26597200 TTTATAATACTTTGC
1 TTTATATTACTTTGC
* * *
26597215 TTTGCT-TTCCTTTAC
1 TTT-ATATTACTTTGC
*
26597230 TTTATATTGCTTTGC
1 TTTATATTACTTTGC
26597245 TTTATATTACTTTG
1 TTTATATTACTTTG
26597259 GTTTGCTTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
14 1 0.03
15 32 0.94
16 1 0.03
ACGTcount: A:0.17, C:0.15, G:0.08, T:0.59
Consensus pattern (15 bp):
TTTATATTACTTTGC
Found at i:26597264 original size:25 final size:24
Alignment explanation
Indices: 26597210--26597266 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
26597200 TTTATAATAC
*
26597210 TTTGCTTTGCTTTCCTTTACTTTA
1 TTTGCTTTGCTTTCATTTACTTTA
*
26597234 TATTGCTTTGCTTT-ATATTACTTTGG
1 T-TTGCTTTGCTTTCAT-TTACTTT-A
26597260 TTTGCTT
1 TTTGCTT
26597267 AAAATATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 2 0.07
25 25 0.89
26 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (24 bp):
TTTGCTTTGCTTTCATTTACTTTA
Found at i:26597314 original size:15 final size:15
Alignment explanation
Indices: 26597294--26597323 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26597284 CTTTATATTA
*
26597294 CTTTATATTGCTTTG
1 CTTTATATTACTTTG
26597309 CTTTATATTACTTTG
1 CTTTATATTACTTTG
26597324 GTTTCCCATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.10, T:0.60
Consensus pattern (15 bp):
CTTTATATTACTTTG
Found at i:26597322 original size:10 final size:10
Alignment explanation
Indices: 26597278--26597307 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
26597268 AAATATTTAC
26597278 ATATTACTTT
1 ATATTACTTT
26597288 ATATTACTTT
1 ATATTACTTT
*
26597298 ATATTGCTTT
1 ATATTACTTT
26597308 GCTTTATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.27, C:0.10, G:0.03, T:0.60
Consensus pattern (10 bp):
ATATTACTTT
Found at i:26600599 original size:25 final size:25
Alignment explanation
Indices: 26600570--26600635 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
26600560 TCATCTATTA
*
26600570 TTCTTTGCTTTGCTTTATATTACTT
1 TTCTTTACTTTGCTTTATATTACTT
*
26600595 TTCTTTACTTTTCTTTATATTACTT
1 TTCTTTACTTTGCTTTATATTACTT
*
26600620 TGCTTTA-TATTGCTTT
1 TTCTTTACT-TTGCTTT
26600636 GCTTCATCGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
24 1 0.03
25 35 0.97
ACGTcount: A:0.14, C:0.15, G:0.06, T:0.65
Consensus pattern (25 bp):
TTCTTTACTTTGCTTTATATTACTT
Found at i:26600600 original size:15 final size:15
Alignment explanation
Indices: 26600599--26600639 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
26600589 TTACTTTTCT
*
26600599 TTACTTTTCTTTATA
1 TTACTTTGCTTTATA
26600614 TTACTTTGCTTTATA
1 TTACTTTGCTTTATA
*
26600629 TTGCTTTGCTT
1 TTACTTTGCTT
26600640 CATCGTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (15 bp):
TTACTTTGCTTTATA
Found at i:26601758 original size:16 final size:17
Alignment explanation
Indices: 26601736--26601779 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
26601726 GAGCAAAGAG
26601736 CAAAGCAAAGCCAAAAA
1 CAAAGCAAAGCCAAAAA
**
26601753 -AAAGCAAAGAGAAAAA
1 CAAAGCAAAGCCAAAAA
26601769 CAAAGCAAAGC
1 CAAAGCAAAGC
26601780 AAATTGAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.66, C:0.18, G:0.16, T:0.00
Consensus pattern (17 bp):
CAAAGCAAAGCCAAAAA
Found at i:26605692 original size:38 final size:38
Alignment explanation
Indices: 26605648--26605725 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
26605638 AAATTTAGTT
26605648 TTCTGGCATACTTTCTTAGACATGGGATTCTCTTTAAA
1 TTCTGGCATACTTTCTTAGACATGGGATTCTCTTTAAA
26605686 TTCTGGCATACTTTCTTAGACATGGGATTCTCTTTAAA
1 TTCTGGCATACTTTCTTAGACATGGGATTCTCTTTAAA
26605724 TT
1 TT
26605726 TTGTTGGTGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.23, C:0.18, G:0.15, T:0.44
Consensus pattern (38 bp):
TTCTGGCATACTTTCTTAGACATGGGATTCTCTTTAAA
Found at i:26606726 original size:22 final size:22
Alignment explanation
Indices: 26606698--26606769 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
26606688 AAAGCAAAGC
*
26606698 AAAGCACAACACATCAATATAA
1 AAAGCACAACACAGCAATATAA
* *
26606720 AAAGCACAGCACGGCAATATAA
1 AAAGCACAACACAGCAATATAA
* *
26606742 AAAGCA-AAGCAAAGCAATATAG
1 AAAGCACAA-CACAGCAATATAA
26606764 AAAGCA
1 AAAGCA
26606770 AAGCAAAACA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
21 1 0.02
22 41 0.98
ACGTcount: A:0.57, C:0.19, G:0.14, T:0.10
Consensus pattern (22 bp):
AAAGCACAACACAGCAATATAA
Found at i:26606770 original size:22 final size:22
Alignment explanation
Indices: 26606712--26606890 Score: 96
Period size: 22 Copynumber: 7.9 Consensus size: 22
26606702 CACAACACAT
* **
26606712 CAATATAAAAAGCACAGCACGG
1 CAATATAAAAAGCAAAGCAAAG
26606734 CAATATAAAAAGCAAAGCAAAG
1 CAATATAAAAAGCAAAGCAAAG
* *
26606756 CAATATAGAAAGCAAAGCAAAA
1 CAATATAAAAAGCAAAGCAAAG
* ** *
26606778 CAA-AGCAAAGTAATATAAAAACAAAG
1 CAATA--TAA--AA-AGCAAAGCAAAG
* * *
26606804 CAAAACAAAGTAAAACACAA-CAAAG
1 CAATA-TAA--AAAGCA-AAGCAAAG
*
26606829 CATTATAAAAAGCAAAGCAAAG
1 CAATATAAAAAGCAAAGCAAAG
* * *
26606851 C-ACA-ACAAAGCAAACCAAAG
1 CAATATAAAAAGCAAAGCAAAG
*
26606871 CAACATAAAAAGCAAAGCAA
1 CAATATAAAAAGCAAAGCAA
26606891 TTTAAACAAC
Statistics
Matches: 124, Mismatches: 23, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
20 15 0.12
21 7 0.06
22 65 0.52
23 1 0.01
24 2 0.02
25 12 0.10
26 21 0.17
27 1 0.01
ACGTcount: A:0.62, C:0.18, G:0.12, T:0.08
Consensus pattern (22 bp):
CAATATAAAAAGCAAAGCAAAG
Found at i:26606782 original size:32 final size:31
Alignment explanation
Indices: 26606741--26606813 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
26606731 CGGCAATATA
*
26606741 AAAAGCAAAGCAAAGCAATATAGAAAGCAAAGC
1 AAAA-CAAAGCAAAGCAATATA-AAAACAAAGC
*
26606774 AAAACAAAGCAAAGTAATATAAAAACAAAGC
1 AAAACAAAGCAAAGCAATATAAAAACAAAGC
26606805 AAAACAAAG
1 AAAACAAAG
26606814 TAAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 18 0.47
32 16 0.42
33 4 0.11
ACGTcount: A:0.66, C:0.14, G:0.14, T:0.07
Consensus pattern (31 bp):
AAAACAAAGCAAAGCAATATAAAAACAAAGC
Found at i:26606800 original size:21 final size:21
Alignment explanation
Indices: 26606774--26606890 Score: 91
Period size: 21 Copynumber: 5.6 Consensus size: 21
26606764 AAAGCAAAGC
*
26606774 AAAACAAAGCAAAGTAATATA
1 AAAACAAAGCAAAGCAATATA
*
26606795 AAAACAAAGCAAAACAA-AGT-
1 AAAACAAAGCAAAGCAATA-TA
*
26606815 AAAACACAA-CAAAGCATTATA
1 AAAACA-AAGCAAAGCAATATA
*
26606836 AAAAGCAAAGCAAAGCACA-A-C
1 AAAA-CAAAGCAAAGCA-ATATA
* * *
26606857 AAAGCAAACCAAAGCAACATA
1 AAAACAAAGCAAAGCAATATA
26606878 AAAAGCAAAGCAA
1 AAAA-CAAAGCAA
26606891 TTTAAACAAC
Statistics
Matches: 75, Mismatches: 11, Indels: 19
0.71 0.10 0.18
Matches are distributed among these distances:
19 1 0.01
20 26 0.35
21 31 0.41
22 17 0.23
ACGTcount: A:0.65, C:0.18, G:0.10, T:0.07
Consensus pattern (21 bp):
AAAACAAAGCAAAGCAATATA
Found at i:26606870 original size:42 final size:41
Alignment explanation
Indices: 26606764--26606890 Score: 150
Period size: 42 Copynumber: 3.0 Consensus size: 41
26606754 AGCAATATAG
*
26606764 AAAGCAAAGCAAAACAAAGCAAAGTAATATAAAAA-CAAAGC
1 AAAGCAAAGCAAAACAAA-CAAAGCAATATAAAAAGCAAAGC
* * *
26606805 AAAACAAAGTAAAACACAACAAAGCATTATAAAAAGCAAAGC
1 AAAGCAAAGCAAAACA-AACAAAGCAATATAAAAAGCAAAGC
* *
26606847 AAAGCACAA-CAAAGCAAACCAAAGCAACATAAAAAGCAAAGC
1 AAAGCA-AAGCAAAACAAA-CAAAGCAATATAAAAAGCAAAGC
26606889 AA
1 AA
26606891 TTTAAACAAC
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
41 30 0.41
42 41 0.56
43 2 0.03
ACGTcount: A:0.65, C:0.18, G:0.11, T:0.06
Consensus pattern (41 bp):
AAAGCAAAGCAAAACAAACAAAGCAATATAAAAAGCAAAGC
Found at i:26606888 original size:17 final size:17
Alignment explanation
Indices: 26606866--26606911 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
26606856 CAAAGCAAAC
26606866 CAAAGCAACATAAA-AA
1 CAAAGCAACATAAACAA
**
26606882 GCAAAGCAATTTAAACAA
1 -CAAAGCAACATAAACAA
26606900 CAAAGCAACATA
1 CAAAGCAACATA
26606912 TTGACAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 22 0.92
18 2 0.08
ACGTcount: A:0.61, C:0.20, G:0.09, T:0.11
Consensus pattern (17 bp):
CAAAGCAACATAAACAA
Found at i:26606890 original size:5 final size:5
Alignment explanation
Indices: 26606742--26606873 Score: 65
Period size: 5 Copynumber: 25.4 Consensus size: 5
26606732 GGCAATATAA
* *
26606742 AAAGC AAAGC AAAGC AATATAG- AAAGC AAAGC AAAAC AAAGC AAAGT
1 AAAGC AAAGC AAAGC -A-A-AGC AAAGC AAAGC AAAGC AAAGC AAAGC
** * * * * *
26606789 AATATA AAAAC AAAGC AAAAC AAAGT AAAAC ACAA-C AAAGC ATTATA-A
1 AA-AGC AAAGC AAAGC AAAGC AAAGC AAAGC A-AAGC AAAGC A--A-AGC
*
26606837 AAAGC AAAGC AAAGC ACAA-C AAAGC AAACC AAAGC AA
1 AAAGC AAAGC AAAGC A-AAGC AAAGC AAAGC AAAGC AA
26606874 CATAAAAAGC
Statistics
Matches: 97, Mismatches: 17, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
4 7 0.07
5 75 0.77
6 9 0.09
7 3 0.03
8 3 0.03
ACGTcount: A:0.64, C:0.17, G:0.12, T:0.07
Consensus pattern (5 bp):
AAAGC
Found at i:26613311 original size:24 final size:24
Alignment explanation
Indices: 26613284--26613341 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
26613274 AGACTGATAA
*
26613284 GAGTTTGACTCAAACAAATAAACT
1 GAGTTTAACTCAAACAAATAAACT
* * *
26613308 GAGTTTAATTGAAACAAATAAACA
1 GAGTTTAACTCAAACAAATAAACT
*
26613332 AAGTTTAACT
1 GAGTTTAACT
26613342 AAAAGATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (24 bp):
GAGTTTAACTCAAACAAATAAACT
Found at i:26615423 original size:30 final size:31
Alignment explanation
Indices: 26615383--26615440 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
26615373 TGATCAAAAT
*
26615383 TTTTAGATAGTTTAGGGGTTAAAACATAATC
1 TTTTAGATAGTTTAGGGGTCAAAACATAATC
26615414 TTTTA-ATAGTTTAGGGGTCAAAACATA
1 TTTTAGATAGTTTAGGGGTCAAAACATA
26615441 GAGTCTAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (31 bp):
TTTTAGATAGTTTAGGGGTCAAAACATAATC
Found at i:26616285 original size:4 final size:4
Alignment explanation
Indices: 26616276--26616300 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
26616266 TAACAATGTG
26616276 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
26616301 TGTATGTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:26617368 original size:42 final size:41
Alignment explanation
Indices: 26617314--26617964 Score: 453
Period size: 42 Copynumber: 16.3 Consensus size: 41
26617304 TCTTGATTTA
* *
26617314 GGGGTAAAAGATTGGATGATGGCTTCAGTCTGCCCCATGATC
1 GGGGTAAGAGATTGG-TGATGGCTTCAATCTGCCCCATGATC
*
26617356 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATC
1 GGGGTAAGAGATTGG-TGATGGCTTCAATCTGCCCCATGATC
* * *
26617398 -GGGTAAGAAATTGGATGATGTCTTCAATCTGCCCCATTA-C
1 GGGGTAAGAGATTGG-TGATGGCTTCAATCTGCCCCATGATC
** *
26617438 TGGGGTAAGAGATTGGATGAT---TTCAATCTGCTTCATGGTC
1 -GGGGTAAGAGATTGG-TGATGGCTTCAATCTGCCCCATGATC
* * * *
26617478 GGGGTACGAGATTGGATGATGTCTACAATCTACCCCATGATC
1 GGGGTAAGAGATTGG-TGATGGCTTCAATCTGCCCCATGATC
* * * * *
26617520 TGGGTAAGATATT-G-GATGGCTTCAATCTGCTCTATTAT-
1 GGGGTAAGAGATTGGTGATGGCTTCAATCTGCCCCATGATC
* * * * *
26617558 TGGGTAAGAGAGTGGATGATGTCTTCAATCTGCCCCGTGATT
1 GGGGTAAGAGATTGG-TGATGGCTTCAATCTGCCCCATGATC
* * *
26617600 GGTGTAAGAGATT-G-GATGGCTGCAATCTGCCTCATGATC
1 GGGGTAAGAGATTGGTGATGGCTTCAATCTGCCCCATGATC
* * * * * * *
26617639 GAGGTAAGAGATTAGATAATGTCTTCAATCTACCCCATTATT
1 GGGGTAAGAGATT-GGTGATGGCTTCAATCTGCCCCATGATC
* *
26617681 GGGGTAAGAGA-TCG-GAT-GCTTCAATCTGCTCCATGATC
1 GGGGTAAGAGATTGGTGATGGCTTCAATCTGCCCCATGATC
* * * * *
26617719 GAGGTAAGAGATTGGTGTAT--CTTCAATCTAACCTC-TAATT
1 GGGGTAAGAGATTGGTG-ATGGCTTCAATCT-GCCCCATGATC
* * * ** *
26617759 AGGGTAAAAGA-T-CTGAT-GCTTCAATCTAACCCATGATT
1 GGGGTAAGAGATTGGTGATGGCTTCAATCTGCCCCATGATC
* * *
26617797 GGGGTAAGAGATTGGTG-TGTCTTCAATCTGCCTTC-TGATT
1 GGGGTAAGAGATTGGTGATGGCTTCAATCTGCC-CCATGATC
* * *
26617837 AGGGTAAAAGATT-G-GAT-GCTTCAATCTGCCACATGATC
1 GGGGTAAGAGATTGGTGATGGCTTCAATCTGCCCCATGATC
* * * *
26617875 AGGGCAAGAGATTGGTG-TGTCTTCAATCTGCCCTC-TGATT
1 GGGGTAAGAGATTGGTGATGGCTTCAATCTGCCC-CATGATC
* *
26617915 AGGGTAAAAGATT-G-GAT-GCTTCAATCTGCCCCATGAT-
1 GGGGTAAGAGATTGGTGATGGCTTCAATCTGCCCCATGATC
*
26617952 TGGGTAAGAGATT
1 GGGGTAAGAGATT
26617965 CGATGGTAGC
Statistics
Matches: 483, Mismatches: 95, Indels: 67
0.75 0.15 0.10
Matches are distributed among these distances:
37 18 0.04
38 107 0.22
39 95 0.20
40 79 0.16
41 65 0.13
42 119 0.25
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (41 bp):
GGGGTAAGAGATTGGTGATGGCTTCAATCTGCCCCATGATC
Found at i:26617585 original size:122 final size:124
Alignment explanation
Indices: 26617314--26617969 Score: 491
Period size: 122 Copynumber: 5.5 Consensus size: 124
26617304 TCTTGATTTA
* * *
26617314 GGGGTAAAAGATTGGATGATGGCTTCAGTCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTC
* *
26617379 TTCAATCTGCCCCATGATCGGGTAAGAAATTGGATGATGTCTTCAATCTGCCCCATTACT
66 TACAATCTACCCCATGATCGGGTAAGAAATTGGATGA-GTCTTCAATCTGCCCCATTACT
** * *
26617439 GGGGTAAGAGATTGGATGA--T-TTCAATCTGCTTCATGGTCGGGGTACGAGATTGGATGATGTC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTC
* * *
26617501 TACAATCTACCCCATGATCTGGGTAAGATATTGGATG-G-CTTCAATCTGCTCTATTA-T
66 TACAATCTACCCCATGATC-GGGTAAGAAATTGGATGAGTCTTCAATCTGCCCCATTACT
* * * * *
26617558 TGGGTAAGAGAGTGGATGATGTCTTCAATCTGCCCCGTGATTGGTGTAAGAGATTGGATG--G-C
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTC
* * * * * * * *
26617620 TGCAATCTGCCTCATGATCGAGGTAAGAGATTAGATAATGTCTTCAATCTACCCCATTATT
66 TACAATCTACCCCATGATCG-GGTAAGAAATTGGATGA-GTCTTCAATCTGCCCCATTACT
* * * *
26617681 GGGGTAAGAGA-TCG--GATG-CTTCAATCTGCTCCATGATCGAGGTAAGAGATTGG-TG-TATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTC
* * * * ** * *
26617740 TTCAATCTAACCTC-TAATTAGGGTAA-AAGATCT-GAT--G-CTTCAATCTAACCCATGATT
66 TACAATCT-ACCCCATGA-TCGGGTAAGAA-AT-TGGATGAGTCTTCAATCTGCCCCATTACT
* ** *
26617797 GGGGTAAGAGATTGG-TG-TGTCTTCAATCTGCCTTC-TGATTAGGGTAAAAGATT-G--GATG-
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCC-CCATGATCGGGGTAAGAGATTGGATGATGT
* * * * * * * *
26617855 CTTCAATCTGCCACATGATCAGGGCAAGAGATTGG-TGTGTCTTCAATCTGCCCTC-TGATT
65 CTACAATCTACCCCATGATC-GGGTAAGAAATTGGATGAGTCTTCAATCTGCCC-CATTACT
* * * *
26617915 AGGGTAAAAGATT-G--GATG-CTTCAATCTGCCCCATGAT-TGGGTAAGAGATTCGATG
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATG
26617970 GTAGCTTCGC
Statistics
Matches: 432, Mismatches: 66, Indels: 73
0.76 0.12 0.13
Matches are distributed among these distances:
115 18 0.04
116 67 0.16
117 12 0.03
118 57 0.13
119 81 0.19
120 41 0.09
121 10 0.02
122 101 0.23
123 27 0.06
125 18 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (124 bp):
GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTC
TACAATCTACCCCATGATCGGGTAAGAAATTGGATGAGTCTTCAATCTGCCCCATTACT
Found at i:26617590 original size:161 final size:161
Alignment explanation
Indices: 26617316--26617969 Score: 608
Period size: 161 Copynumber: 4.1 Consensus size: 161
26617306 TTGATTTAGG
* * * * *
26617316 GGTAAAAGATTGGATGATGGCTTCAGTCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTCTT
1 GGTAAGAGATTGGATGATGTCTTCAATCTACCCCATGATCTGGGTAAGAGATTGGATG--G-CTT
* * *
26617381 CAATCTGCCCCATGATCGGGTAAGAAATTGGATGATGTCTTCAATCTGCCCCATTACTGGGGTAA
63 CAATCTGCTCCATGATCGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGACTGGGGTAA
* * * * *
26617446 GAGATTGGATGATTTCAATCTGCTTCATGGTCGG
128 GAGATTGGATGACTGCAATCTGCCTCATGATCGA
* * *
26617480 GGTACGAGATTGGATGATGTCTACAATCTACCCCATGATCTGGGTAAGATATTGGATGGCTTCAA
1 GGTAAGAGATTGGATGATGTCTTCAATCTACCCCATGATCTGGGTAAGAGATTGGATGGCTTCAA
* * * * * * *
26617545 TCTGCTCTATTATTGGGTAAGAGAGTGGATGATGTCTTCAATCTGCCCCGTGATTGGTGTAAGAG
66 TCTGCTCCATGATCGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGACTGGGGTAAGAG
*
26617610 ATTGGATGGCTGCAATCTGCCTCATGATCGA
131 ATTGGATGACTGCAATCTGCCTCATGATCGA
* * * *
26617641 GGTAAGAGATTAGATAATGTCTTCAATCTACCCCATTAT-TGGGGTAAGAGATCGGAT-GCTTCA
1 GGTAAGAGATTGGATGATGTCTTCAATCTACCCCATGATCT-GGGTAAGAGATTGGATGGCTTCA
* * * * * *
26617704 ATCTGCTCCATGATCGAGGTAAGAGATTGG-TG-TATCTTCAATCTAACCTC-TAATTAGGGTAA
65 ATCTGCTCCATGATCG-GGTAAGAGATTGGATGATGTCTTCAATCT-GCCCCATGACTGGGGTAA
* * * * *
26617766 AAGATCT-GATG-CTTCAATCTAACC-CATGATTGG
128 GAGAT-TGGATGACTGCAATCT-GCCTCATGATCGA
* * *
26617799 GGTAAGAGATTGG-TG-TGTCTTCAATCTGCCTTC-TGAT-TAGGGTAAAAGATTGGAT-GCTTC
1 GGTAAGAGATTGGATGATGTCTTCAATCTACC-CCATGATCT-GGGTAAGAGATTGGATGGCTTC
* * *
26617859 AATCTGC-CACATGATCAGGGCAAGAGATTGG-TG-TGTCTTCAATCTGCCCTC-TGATTAGGGT
64 AATCTGCTC-CATGATC-GGGTAAGAGATTGGATGATGTCTTCAATCTGCCC-CATGACTGGGGT
* * * *
26617920 AAAAGATTGGATG-CTTCAATCTGCCCCATGATTG-
126 AAGAGATTGGATGACTGCAATCTGCCTCATGATCGA
*
26617954 GGTAAGAGATTCGATG
1 GGTAAGAGATTGGATG
26617970 GTAGCTTCGC
Statistics
Matches: 417, Mismatches: 61, Indels: 32
0.82 0.12 0.06
Matches are distributed among these distances:
155 18 0.04
156 116 0.28
157 3 0.01
158 27 0.06
159 30 0.07
160 26 0.06
161 146 0.35
162 1 0.00
164 50 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (161 bp):
GGTAAGAGATTGGATGATGTCTTCAATCTACCCCATGATCTGGGTAAGAGATTGGATGGCTTCAA
TCTGCTCCATGATCGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCATGACTGGGGTAAGAG
ATTGGATGACTGCAATCTGCCTCATGATCGA
Found at i:26617765 original size:40 final size:39
Alignment explanation
Indices: 26617721--26617929 Score: 171
Period size: 40 Copynumber: 5.3 Consensus size: 39
26617711 CCATGATCGA
* *
26617721 GGTAAGAGATTGGTGTATCTTCAATCTAACCTCTAATTAG
1 GGTAAAAGATTGGTGTATCTTCAATCT-ACCTCTGATTAG
* *
26617761 GGTAAAAGA-T-CTG-ATGCTTCAATCTAACC-CATGATTGG
1 GGTAAAAGATTGGTGTAT-CTTCAATCT-ACCTC-TGATTAG
* * *
26617799 GGTAAGAGATTGGTGTGTCTTCAATCTGCCTTCTGATTAG
1 GGTAAAAGATTGGTGTATCTTCAATCTACC-TCTGATTAG
* * *
26617839 GGTAAAAGATT-G-G-ATGCTTCAATCTGCCACATGATCAG
1 GGTAAAAGATTGGTGTAT-CTTCAATCTACCTC-TGATTAG
* * * *
26617877 GGCAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAG
1 GGTAAAAGATTGGTGTATCTTCAATCT-ACCTCTGATTAG
26617917 GGTAAAAGATTGG
1 GGTAAAAGATTGG
26617930 ATGCTTCAAT
Statistics
Matches: 135, Mismatches: 21, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
37 5 0.04
38 56 0.41
39 6 0.04
40 62 0.46
41 6 0.04
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (39 bp):
GGTAAAAGATTGGTGTATCTTCAATCTACCTCTGATTAG
Found at i:26617778 original size:78 final size:76
Alignment explanation
Indices: 26617373--26617964 Score: 496
Period size: 78 Copynumber: 7.5 Consensus size: 76
26617363 GAGATTGGAT
* * * *
26617373 GATGTCTTCAATCTGCCCCATGATCG-GGTAAGAAATTGGATGATGTCTTCAATCTGCCCCATTA
1 GATG-CTTCAATCTG-CCCATGATCGAGGTAAGAGATTGG-TG-TGTCTTCAATCTACCTC-TGA
* * *
26617437 CTGGGGTAAGAGATTG
61 TTAGGGTAAAAGATTG
* * * * * * *
26617453 GATGATTTCAATCTGCTTCATGGTCGGGGTACGAGATTGGATGATGTCTACAATCTACCCCATGA
1 GATG-CTTCAATCTGC-CCATGATCGAGGTAAGAGATTGG-TG-TGTCTTCAATCTACCTC-TGA
* *
26617518 TCT-GGGTAAGATATTG
61 T-TAGGGTAAAAGATTG
* * * * * *
26617534 GATGGCTTCAATCTGCTCTATTATTG-GGTAAGAGAGTGGATGATGTCTTCAATCTGCCCCGTGA
1 GAT-GCTTCAATCTGC-CCATGATCGAGGTAAGAGATTGG-TG-TGTCTTCAATCTACCTC-TGA
*
26617598 TT-GGTGTAAGAGATTG
61 TTAGG-GTAAAAGATTG
* * * * *
26617614 GATGGCTGCAATCTGCCTCATGATCGAGGTAAGAGATTAGATAATGTCTTCAATCTACCCCATTA
1 GAT-GCTTCAATCTGCC-CATGATCGAGGTAAGAGATT-GGT-GTGTCTTCAATCTACCTC-TGA
* * *
26617679 TTGGGGTAAGAGATCG
61 TTAGGGTAAAAGATTG
* *
26617695 GATGCTTCAATCTGCTCCATGATCGAGGTAAGAGATTGGTGTATCTTCAATCTAACCTCTAATTA
1 GATGCTTCAATCTGC-CCATGATCGAGGTAAGAGATTGGTGTGTCTTCAATCT-ACCTCTGATTA
26617760 GGGTAAAAGATCT-
64 GGGTAAAAGAT-TG
* * * *
26617773 GATGCTTCAATCTAACCCATGATTGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCTTCTGATTA
1 GATGCTTCAATCT-GCCCATGATCGAGGTAAGAGATTGGTGTGTCTTCAATCTACC-TCTGATTA
26617838 GGGTAAAAGATTG
64 GGGTAAAAGATTG
* *
26617851 GATGCTTCAATCTGCCACATGATC-AGGGCAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATT
1 GATGCTTCAATCTGCC-CATGATCGA-GGTAAGAGATTGGTGTGTCTTCAATCT-ACCTCTGATT
26617915 AGGGTAAAAGATTG
63 AGGGTAAAAGATTG
*
26617929 GATGCTTCAATCTGCCCCATGATTG-GGTAAGAGATT
1 GATGCTTCAATCTG-CCCATGATCGAGGTAAGAGATT
26617965 CGATGGTAGC
Statistics
Matches: 435, Mismatches: 56, Indels: 45
0.81 0.10 0.08
Matches are distributed among these distances:
77 15 0.03
78 176 0.40
79 16 0.04
80 115 0.26
81 108 0.25
82 5 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (76 bp):
GATGCTTCAATCTGCCCATGATCGAGGTAAGAGATTGGTGTGTCTTCAATCTACCTCTGATTAGG
GTAAAAGATTG
Found at i:26618588 original size:49 final size:49
Alignment explanation
Indices: 26618243--26618627 Score: 253
Period size: 49 Copynumber: 7.9 Consensus size: 49
26618233 CCCTCTTATT
* * * * *
26618243 TCTAAGGTATAAGGTTCGCCATTGTGGCTTCAACCTTTCCCTCCATATC
1 TCTAAGGTACAAGGTTCACTATTGCGGCTTCAATCTTTCCCTCCATATC
* * * * * * **
26618292 CCCATGGTACAAGATTCACTGTTGTGGCTTCAATCTTTCCCAT-CACGTC
1 TCTAAGGTACAAGGTTCACTATTGCGGCTTCAATCTTTCCC-TCCATATC
** * *
26618341 TCTAAGGTACACA-GTTCACCGTTGCGGCTTCAACCTTTCCCTCTATATC
1 TCTAAGGTACA-AGGTTCACTATTGCGGCTTCAATCTTTCCCTCCATATC
* * * * * * **
26618390 TCCATGGTACAAGATTCACCATTGCAGCTTCAATCTTT-CCTATCACGTC
1 TCTAAGGTACAAGGTTCACTATTGCGGCTTCAATCTTTCCCT-CCATATC
* * * * *
26618439 TCTAAGGTACAAGGTTCGCTATTACAGTTTCAA-CATTTCCCTTCATATC
1 TCTAAGGTACAAGGTTCACTATTGCGGCTTCAATC-TTTCCCTCCATATC
* * * * * * **
26618488 TCCATGGTACAAGATTC-GTCGTTGCGGCTTCATTCTTTCCCAT-CACGTC
1 TCTAAGGTACAAGGTTCACT-ATTGCGGCTTCAATCTTTCCC-TCCATATC
*
26618537 TCTAAGGTACAAGGTTTACTATTGCGGCTTCAATCTTTCCCTCCATATC
1 TCTAAGGTACAAGGTTCACTATTGCGGCTTCAATCTTTCCCTCCATATC
* ** * **
26618586 TCTAGGGTATTAGATT-TGTCATTGCGGCTTCAATCTTTCCCT
1 TCTAAGGTACAAGGTTCACT-ATTGCGGCTTCAATCTTTCCCT
26618628 TCAAACCTGT
Statistics
Matches: 257, Mismatches: 66, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
48 9 0.04
49 240 0.93
50 8 0.03
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.35
Consensus pattern (49 bp):
TCTAAGGTACAAGGTTCACTATTGCGGCTTCAATCTTTCCCTCCATATC
Found at i:26618601 original size:98 final size:98
Alignment explanation
Indices: 26618243--26618626 Score: 466
Period size: 98 Copynumber: 3.9 Consensus size: 98
26618233 CCCTCTTATT
* * * *
26618243 TCTAAGGTATAAGGTTCGCCATTGTGGCTTCAACCTTTCCCTCCATATCCCCATGGTACAAGATT
1 TCTAAGGTACAAGGTTCACCATTGCGGCTTCAACCTTTCCCTCCATATCTCCATGGTACAAGATT
* * *
26618308 C-ACTGTTGTGGCTTCAATCTTTCCCATCACGTC
66 CGTC-ATTGCGGCTTCAATCTTTCCCATCACGTC
* *
26618341 TCTAAGGTACACA-GTTCACCGTTGCGGCTTCAACCTTTCCCTCTATATCTCCATGGTACAAGAT
1 TCTAAGGTACA-AGGTTCACCATTGCGGCTTCAACCTTTCCCTCCATATCTCCATGGTACAAGAT
** * *
26618405 TCACCATTGCAGCTTCAATCTTTCCTATCACGTC
65 TCGTCATTGCGGCTTCAATCTTTCCCATCACGTC
* * * * * * *
26618439 TCTAAGGTACAAGGTTCGCTATTACAGTTTCAACATTTCCCTTCATATCTCCATGGTACAAGATT
1 TCTAAGGTACAAGGTTCACCATTGCGGCTTCAACCTTTCCCTCCATATCTCCATGGTACAAGATT
* *
26618504 CGTCGTTGCGGCTTCATTCTTTCCCATCACGTC
66 CGTCATTGCGGCTTCAATCTTTCCCATCACGTC
* * * * * **
26618537 TCTAAGGTACAAGGTTTACTATTGCGGCTTCAATCTTTCCCTCCATATCTCTAGGGTATTAGATT
1 TCTAAGGTACAAGGTTCACCATTGCGGCTTCAACCTTTCCCTCCATATCTCCATGGTACAAGATT
*
26618602 TGTCATTGCGGCTTCAATCTTTCCC
66 CGTCATTGCGGCTTCAATCTTTCCC
26618627 TTCAAACCTG
Statistics
Matches: 242, Mismatches: 41, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
97 1 0.00
98 239 0.99
99 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.35
Consensus pattern (98 bp):
TCTAAGGTACAAGGTTCACCATTGCGGCTTCAACCTTTCCCTCCATATCTCCATGGTACAAGATT
CGTCATTGCGGCTTCAATCTTTCCCATCACGTC
Found at i:26620973 original size:587 final size:587
Alignment explanation
Indices: 26619472--26622400 Score: 5479
Period size: 587 Copynumber: 5.0 Consensus size: 587
26619462 CAAATATATT
* *
26619472 AAAACAAGTTGATTCTTTTCATTTTTTATTTTTTTAAAAAACATTTTTTGATAATTAAAAAGACT
1 AAAACAAGTTGATTCTTTTCATTTTTTATTTTTTAAAAAAACATTTTTTGATAATTAAAAGGACT
*
26619537 TTTACTGATACTTGCACGGGTACGTATTAGTAGTACTACAGTCAGTAAGGACTCAAAATTTACTG
66 TTTACTGATACTTGCACGGGTACGTATTAGTAGTACTAAAGTCAGTAAGGACTCAAAATTTACTG
* * *
26619602 CAGAATACTACCGGTAGTAGTGAAGGTTCTACCAATACAATATATATTACTATCGATACTATTGG
131 CAGAATTCTACCGGTAGTAGCGAAGGTTCTACCAATACCATATATATTACTATCGATACTATTGG
*
26619667 GACTTCTACCGGTACTACACAAGTCAGTAACTAAATACATTTTTCTCCTGCACTTCTACCGGTAC
196 GACTTCTACCAGTACTACACAAGTCAGTAACTAAATACATTTTTCTCCTGCACTTCTACCGGTAC
*
26619732 TATAGTGGATTCTATCGATACTACACTTAACCACCAGAGTTTTTCCGGTACAAGTTTGAAACTAC
261 TATAGTGGATTCTATCGATACTACACTTAACCACCAGAGTTTTTCCAGTACAAGTTTGAAACTAC
*
26619797 CG-AACAAGTCAACAGTTTCATGACATAAACAATAGGAAAATAACAGGCCACATCAAAACTTCAA
326 CGAAACAAGTCAACAGTTTCATGACATAAACAATAGCAAAATAACAGGCCACATCAAAACTTCAA
26619861 ATAACGAATTTCCCAAGATACCAGGAAATACAATCCACCATAATCTAACAAAATACAAAACGTCC
391 ATAACGAATTTCCCAAGATACCAGGAAATACAATCCACCATAATCTAACAAAATACAAAACGTCC
26619926 TAAATCACGACCCTACTTAGGTACATGTTGACCCAAATTAAATCAATTTCACAATTACTTGAGTA
456 TAAATCACGACCCTACTTAGGTACATGTTGACCCAAATTAAATCAATTTCACAATTACTTGAGTA
*
26619991 CGAGATTGGTCCTTGGATGCTGAATCGCGTAAATATATAAAATGCACCTAACTTGCGCATGTAAT
521 CGAGATTGGTCCTTGGATGCTGAATCGCGTAAATATATAAAATGCACCTAACTTGCGCTTGTAAT
26620056 AC
586 AC
**
26620058 AAAACAAGTTGATTCTTTTCATTTTTT-TTTTAAAAAAAAACATTTTTTGATAATTAAAAGGACT
1 AAAACAAGTTGATTCTTTTCATTTTTTATTTTTTAAAAAAACATTTTTTGATAATTAAAAGGACT
* *
26620122 TTAACTGATACTTGCACGGGTACGTATTAGTAGTACTAAAGTTAGTAAGGACTCAAAATTTACTG
66 TTTACTGATACTTGCACGGGTACGTATTAGTAGTACTAAAGTCAGTAAGGACTCAAAATTTACTG
* *
26620187 CAGAATTCTACCGGTAGTAGCGAAGGTTCTACCAATACAATATATATTACTATCGAAACTATTGG
131 CAGAATTCTACCGGTAGTAGCGAAGGTTCTACCAATACCATATATATTACTATCGATACTATTGG
26620252 GACTTCTACC-GATACTACACAAGTCAGTAACTAAATACATTTTTCTCCTGCACTTCTACCGGTA
196 GACTTCTACCAG-TACTACACAAGTCAGTAACTAAATACATTTTTCTCCTGCACTTCTACCGGTA
26620316 CTATAGTGGATTCTATCGATACTACACTTAACCACCAGAGTTTTTCCAGTACAAGTTTGAAACTA
260 CTATAGTGGATTCTATCGATACTACACTTAACCACCAGAGTTTTTCCAGTACAAGTTTGAAACTA
26620381 CCGAAACAAGTCAACAGTTTCATGACATAAACAATAGCAAAATAACAGGCCACATCAAAACTTCA
325 CCGAAACAAGTCAACAGTTTCATGACATAAACAATAGCAAAATAACAGGCCACATCAAAACTTCA
26620446 AATAACGAATTTCCCAAGATACCAGGAAATACAATCCACCATAATCTAACAAAATACAAAACGTC
390 AATAACGAATTTCCCAAGATACCAGGAAATACAATCCACCATAATCTAACAAAATACAAAACGTC
*
26620511 CTAAATCACGACCCTACTTAGGTACATGTTAACCCAAATTAAATCAATTTCACAATTACTTGAGT
455 CTAAATCACGACCCTACTTAGGTACATGTTGACCCAAATTAAATCAATTTCACAATTACTTGAGT
26620576 ACGAGATTGGTCCTTGGATGCTGAATCGCGTAAATATATAAAATGCACCTAACTTGCGCTTGTAA
520 ACGAGATTGGTCCTTGGATGCTGAATCGCGTAAATATATAAAATGCACCTAACTTGCGCTTGTAA
26620641 TAC
585 TAC
26620644 AAAACAAGTTGATTCTTTTCATTTTTTATTTTTTAAAAAAACATTTTTTGATAATTAAAAGGACT
1 AAAACAAGTTGATTCTTTTCATTTTTTATTTTTTAAAAAAACATTTTTTGATAATTAAAAGGACT
*
26620709 TTTACTGATACTTGCACGGGTACGTATTAGTAGTACTAAAGTCAGTAAGGACACAAAATTTACTG
66 TTTACTGATACTTGCACGGGTACGTATTAGTAGTACTAAAGTCAGTAAGGACTCAAAATTTACTG
* *
26620774 CAGAATTCTACTGGTAGTAGCGAAGGTTCTACCAATACCATAGATATTACTATCGATACTATTGG
131 CAGAATTCTACCGGTAGTAGCGAAGGTTCTACCAATACCATATATATTACTATCGATACTATTGG
*
26620839 GACTTCTACCAGTACTACACAAGTCAGTAACTAAATACATTTTTCTCCTGCACTTCTACCAGTAC
196 GACTTCTACCAGTACTACACAAGTCAGTAACTAAATACATTTTTCTCCTGCACTTCTACCGGTAC
26620904 TATAGTGGATTCTATCGATACTACACTTAACCACCAGAGTTTTTCCAGTACAAGTTTGAAACTAC
261 TATAGTGGATTCTATCGATACTACACTTAACCACCAGAGTTTTTCCAGTACAAGTTTGAAACTAC
26620969 CGAAACAAGTCAACAGTTTCATGACATAAACAATAGCAAAATAACAGGCCACATCAAAACTTCAA
326 CGAAACAAGTCAACAGTTTCATGACATAAACAATAGCAAAATAACAGGCCACATCAAAACTTCAA
26621034 ATAACGAATTTCCCAAGATACCAGGAAATACAATCCACCATAATCTAACAAAATACAAAACGTCC
391 ATAACGAATTTCCCAAGATACCAGGAAATACAATCCACCATAATCTAACAAAATACAAAACGTCC
26621099 TAAATCACGACCCTACTTAGGTACATGTTGACCCAAATTAAATCAATTTCACAATTACTTGAGTA
456 TAAATCACGACCCTACTTAGGTACATGTTGACCCAAATTAAATCAATTTCACAATTACTTGAGTA
26621164 CGAGATTGGTCCTTGGATGCTGAATCGCGTAAATATATAAAATGCACCTAACTTGCGCTTGTAAT
521 CGAGATTGGTCCTTGGATGCTGAATCGCGTAAATATATAAAATGCACCTAACTTGCGCTTGTAAT
26621229 AC
586 AC
26621231 AAAACAAGTTGATTCTTTTCATTTTTTATTTTTTAAAAAAACATTTTTTGATAATTAAAAGGACT
1 AAAACAAGTTGATTCTTTTCATTTTTTATTTTTTAAAAAAACATTTTTTGATAATTAAAAGGACT
*
26621296 TTTACTGATACTTGCACGGGTACGTATTAGTAGTACTAAAGTCAGTAAGGACACAAAATTTACTG
66 TTTACTGATACTTGCACGGGTACGTATTAGTAGTACTAAAGTCAGTAAGGACTCAAAATTTACTG
* *
26621361 CAGAATTCTACTGGTAGTAGCGAAGGTTCTACCAATACCATAGATATTACTATCGATACTATTGG
131 CAGAATTCTACCGGTAGTAGCGAAGGTTCTACCAATACCATATATATTACTATCGATACTATTGG
*
26621426 GACTTCTACCAGTACTACACAAGTCAGTAACTAAATACATTTTTCTCCTGCACTTCTACCAGTAC
196 GACTTCTACCAGTACTACACAAGTCAGTAACTAAATACATTTTTCTCCTGCACTTCTACCGGTAC
*
26621491 TATAGTGGATTCTATCGATACTACACTTAACCACCAGAGTTTTTCCAATACAAGTTTGAAACTAC
261 TATAGTGGATTCTATCGATACTACACTTAACCACCAGAGTTTTTCCAGTACAAGTTTGAAACTAC
26621556 CGAAACAAGTCAACAGTTTCATGACATAAACAATAGCAAAATAACAGGCCACATCAAAACTTCAA
326 CGAAACAAGTCAACAGTTTCATGACATAAACAATAGCAAAATAACAGGCCACATCAAAACTTCAA
26621621 ATAACGAATTTCCCAAGATACCAGGAAATACAATCCACCATAATCTAACAAAATACAAAACGTCC
391 ATAACGAATTTCCCAAGATACCAGGAAATACAATCCACCATAATCTAACAAAATACAAAACGTCC
26621686 TAAATCACGACCCTACTTAGGTACATGTTGACCCAAATTAAATCAATTTCACAATTACTTGAGTA
456 TAAATCACGACCCTACTTAGGTACATGTTGACCCAAATTAAATCAATTTCACAATTACTTGAGTA
26621751 CGAGATTGGTCCTTGGATGCTGAATCGCGTAAATATATAAAATGCACCTAACTTGCGCTTGTAAT
521 CGAGATTGGTCCTTGGATGCTGAATCGCGTAAATATATAAAATGCACCTAACTTGCGCTTGTAAT
26621816 AC
586 AC
26621818 AAAACAAGTTGATTCTTTTCATTTTTTATTTTTTAAAAAAACATTTTTTGATAATTAAAAGGACT
1 AAAACAAGTTGATTCTTTTCATTTTTTATTTTTTAAAAAAACATTTTTTGATAATTAAAAGGACT
* *
26621883 TTTACTGATACTTGCACGGGTATGTATTAGTAGTACTAAAGTCAGTAAGGACTCAAAATTTACTA
66 TTTACTGATACTTGCACGGGTACGTATTAGTAGTACTAAAGTCAGTAAGGACTCAAAATTTACTG
26621948 CAGAATTCTACC-G--GT-----A-G-TCTACCAATACCATATATATTACTATCGATACTATTGG
131 CAGAATTCTACCGGTAGTAGCGAAGGTTCTACCAATACCATATATATTACTATCGATACTATTGG
26622003 GACTTCTACCAGTACTACACAAGTCAGTAACTAAATACATTTTTCTCCTGCACTTCTACCGGTAC
196 GACTTCTACCAGTACTACACAAGTCAGTAACTAAATACATTTTTCTCCTGCACTTCTACCGGTAC
* * *
26622068 TATAGTGGATTCTATCGATACTACACTGAACCACCAGAGTTTTTCCGGTACAAGTTTGAAACTGC
261 TATAGTGGATTCTATCGATACTACACTTAACCACCAGAGTTTTTCCAGTACAAGTTTGAAACTAC
26622133 CGAAACAAGTCAACAGTTTCATGACATAAACAATAGCAAAATAACAGGCCACATCAAAACTTCAA
326 CGAAACAAGTCAACAGTTTCATGACATAAACAATAGCAAAATAACAGGCCACATCAAAACTTCAA
26622198 ATAACGAATTTCCCAAGATACCAGGAAATACAATCCACCATAATCTAACAAAATACAAAACGTCC
391 ATAACGAATTTCCCAAGATACCAGGAAATACAATCCACCATAATCTAACAAAATACAAAACGTCC
26622263 TAAATCACGACCCTACTTAGGTACATGTTGACCCAAATTAAATCAATTTCACAATTACTTGAGTA
456 TAAATCACGACCCTACTTAGGTACATGTTGACCCAAATTAAATCAATTTCACAATTACTTGAGTA
26622328 CGAGATTGGTCCTTGGATGCTGAATCGCGTAAATATATAAAATGCACCTAACTTGCGCTTGTAAT
521 CGAGATTGGTCCTTGGATGCTGAATCGCGTAAATATATAAAATGCACCTAACTTGCGCTTGTAAT
26622393 AC
586 AC
26622395 AAAACA
1 AAAACA
26622401 TACGCTGAGT
Statistics
Matches: 2303, Mismatches: 36, Indels: 17
0.98 0.02 0.01
Matches are distributed among these distances:
577 430 0.19
578 1 0.00
579 1 0.00
584 3 0.00
585 286 0.12
586 311 0.14
587 1270 0.55
588 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (587 bp):
AAAACAAGTTGATTCTTTTCATTTTTTATTTTTTAAAAAAACATTTTTTGATAATTAAAAGGACT
TTTACTGATACTTGCACGGGTACGTATTAGTAGTACTAAAGTCAGTAAGGACTCAAAATTTACTG
CAGAATTCTACCGGTAGTAGCGAAGGTTCTACCAATACCATATATATTACTATCGATACTATTGG
GACTTCTACCAGTACTACACAAGTCAGTAACTAAATACATTTTTCTCCTGCACTTCTACCGGTAC
TATAGTGGATTCTATCGATACTACACTTAACCACCAGAGTTTTTCCAGTACAAGTTTGAAACTAC
CGAAACAAGTCAACAGTTTCATGACATAAACAATAGCAAAATAACAGGCCACATCAAAACTTCAA
ATAACGAATTTCCCAAGATACCAGGAAATACAATCCACCATAATCTAACAAAATACAAAACGTCC
TAAATCACGACCCTACTTAGGTACATGTTGACCCAAATTAAATCAATTTCACAATTACTTGAGTA
CGAGATTGGTCCTTGGATGCTGAATCGCGTAAATATATAAAATGCACCTAACTTGCGCTTGTAAT
AC
Found at i:26623676 original size:21 final size:23
Alignment explanation
Indices: 26623650--26623701 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
26623640 TAGCTACAAA
26623650 ATTAAATACACA-ATA-TATTTT
1 ATTAAATACACACATATTATTTT
26623671 ATTAAA-ACACATCCATATTATTTT
1 ATTAAATACACA--CATATTATTTT
26623695 ATTAAAT
1 ATTAAAT
26623702 TTAACTCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 5 0.19
21 6 0.23
23 3 0.12
24 12 0.46
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (23 bp):
ATTAAATACACACATATTATTTT
Found at i:26624635 original size:6 final size:6
Alignment explanation
Indices: 26624624--26624679 Score: 59
Period size: 6 Copynumber: 9.8 Consensus size: 6
26624614 CGACCTCTCT
26624624 TTTTTC TTTTTC --TTTC TTTTT- TTTTTCC TTTTTC TTTTT- TCTTTT-
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT-C TTTTTC TTTTTC T-TTTTC
26624669 TTTTTC TTTTT
1 TTTTTC TTTTT
26624680 TTGGGTGAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
4 4 0.09
5 10 0.23
6 25 0.57
7 5 0.11
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:26624643 original size:17 final size:17
Alignment explanation
Indices: 26624621--26624680 Score: 86
Period size: 17 Copynumber: 3.5 Consensus size: 17
26624611 TCTCGACCTC
*
26624621 TCTTTTTTCTTTTTCTT
1 TCTTTTTTCTTTTTTTT
26624638 TCTTTTTT-TTTTCCTTTT
1 TCTTTTTTCTTTT--TTTT
26624656 TCTTTTTTCTTTTTTTT
1 TCTTTTTTCTTTTTTTT
26624673 TCTTTTTT
1 TCTTTTTT
26624681 TGGGTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
16 4 0.10
17 20 0.51
18 11 0.28
19 4 0.10
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (17 bp):
TCTTTTTTCTTTTTTTT
Found at i:26624654 original size:22 final size:22
Alignment explanation
Indices: 26624623--26624679 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 22
26624613 TCGACCTCTC
26624623 TTTTTTCTTTTTCTTTCTT-TT
1 TTTTTTCTTTTTCTTTCTTCTT
*
26624644 TTTTTTCCTTTTTCTTTTTTCTTT
1 TTTTTT-CTTTTTCTTTCTTC-TT
26624668 TTTTTTCTTTTT
1 TTTTTTCTTTTT
26624680 TTGGGTGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 6 0.19
22 12 0.38
23 6 0.19
24 8 0.25
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (22 bp):
TTTTTTCTTTTTCTTTCTTCTT
Found at i:26624655 original size:29 final size:30
Alignment explanation
Indices: 26624624--26624679 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
26624614 CGACCTCTCT
26624624 TTTTTC-TTTTTCTTTCTTTTT-TTTTTCC
1 TTTTTCTTTTTTCTTTCTTTTTCTTTTTCC
*
26624652 TTTTTCTTTTTTCTTTTTTTTTCTTTTT
1 TTTTTCTTTTTTCTTTCTTTTTCTTTTT
26624680 TTGGGTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 6 0.24
29 14 0.56
30 5 0.20
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (30 bp):
TTTTTCTTTTTTCTTTCTTTTTCTTTTTCC
Found at i:26624680 original size:7 final size:7
Alignment explanation
Indices: 26624621--26624670 Score: 66
Period size: 7 Copynumber: 7.1 Consensus size: 7
26624611 TCTCGACCTC
26624621 TCTTTTT
1 TCTTTTT
26624628 TC-TTTT
1 TCTTTTT
26624634 TCTTTCTT
1 TCTTT-TT
*
26624642 TTTTTTT
1 TCTTTTT
*
26624649 TCCTTTT
1 TCTTTTT
26624656 TCTTTTT
1 TCTTTTT
26624663 TCTTTTT
1 TCTTTTT
26624670 T
1 T
26624671 TTTCTTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
6 6 0.16
7 25 0.68
8 6 0.16
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TCTTTTT
Found at i:26627862 original size:13 final size:13
Alignment explanation
Indices: 26627846--26627889 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
26627836 TGGTTTGATC
26627846 AATTGATTTTATT
1 AATTGATTTTATT
* **
26627859 AATTGATTTGACC
1 AATTGATTTTATT
*
26627872 AACTGATTTTATT
1 AATTGATTTTATT
26627885 AATTG
1 AATTG
26627890 TTTATTTAAA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.50
Consensus pattern (13 bp):
AATTGATTTTATT
Found at i:26627863 original size:26 final size:26
Alignment explanation
Indices: 26627834--26627889 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
26627824 GATTACAGTG
* * *
26627834 ATTGGTTTGATCAATTGATTTTATTA
1 ATTGATTTGACCAACTGATTTTATTA
26627860 ATTGATTTGACCAACTGATTTTATTA
1 ATTGATTTGACCAACTGATTTTATTA
26627886 ATTG
1 ATTG
26627890 TTTATTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (26 bp):
ATTGATTTGACCAACTGATTTTATTA
Found at i:26630097 original size:27 final size:27
Alignment explanation
Indices: 26630053--26630107 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
26630043 GTTAGTACAG
* * *
26630053 AGCAAAGAGCAAAGCAAAGCCAAGCAA
1 AGCAAAGAGAAAAACAAAGCAAAGCAA
*
26630080 AGCAAAGAGAAAAACAAAGTAAAGCAA
1 AGCAAAGAGAAAAACAAAGCAAAGCAA
26630107 A
1 A
26630108 TTGAACTCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.62, C:0.16, G:0.20, T:0.02
Consensus pattern (27 bp):
AGCAAAGAGAAAAACAAAGCAAAGCAA
Found at i:26632150 original size:23 final size:23
Alignment explanation
Indices: 26632124--26632247 Score: 144
Period size: 23 Copynumber: 5.2 Consensus size: 23
26632114 CTAGCGCGCT
26632124 CTCTGATTAGCACTGTGTGTGCC
1 CTCTGATTAGCACTGTGTGTGCC
26632147 CTCTG-TTCAGCACTGTGTGTGCC
1 CTCTGATT-AGCACTGTGTGTGCC
26632170 CTCTGTTATTAGCACTGTGTGTGCC
1 CTCTG--ATTAGCACTGTGTGTGCC
*
26632195 CTCTATTATTAGCACT-TCGTGTGCC
1 CTC--TGATTAGCACTGT-GTGTGCC
* * *
26632220 CTCTGGTTAGCACTTTGTGTGTC
1 CTCTGATTAGCACTGTGTGTGCC
26632243 CTCTG
1 CTCTG
26632248 TTACCCAACA
Statistics
Matches: 89, Mismatches: 4, Indels: 16
0.82 0.04 0.15
Matches are distributed among these distances:
22 2 0.02
23 45 0.51
24 2 0.02
25 37 0.42
26 2 0.02
27 1 0.01
ACGTcount: A:0.11, C:0.27, G:0.23, T:0.39
Consensus pattern (23 bp):
CTCTGATTAGCACTGTGTGTGCC
Found at i:26632193 original size:48 final size:46
Alignment explanation
Indices: 26632124--26632249 Score: 155
Period size: 48 Copynumber: 2.7 Consensus size: 46
26632114 CTAGCGCGCT
26632124 CTCTGATTAGCACTGTGTGTGCCCTCTGTTCAGCACTGT-GTGTGCC
1 CTCTGATTAGCACTGTGTGTGCCCTCTGTTCAGCACT-TCGTGTGCC
* *
26632170 CTCTGTTATTAGCACTGTGTGTGCCCTCTATTATTAGCACTTCGTGTGCC
1 CTCTG--ATTAGCACTGTGTGTGCCCTCT-GT-TCAGCACTTCGTGTGCC
* * *
26632220 CTCTGGTTAGCACTTTGTGTGTCCTCTGTT
1 CTCTGATTAGCACTGTGTGTGCCCTCTGTT
26632250 ACCCAACACT
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
46 6 0.09
47 1 0.01
48 41 0.59
49 2 0.03
50 19 0.28
ACGTcount: A:0.11, C:0.26, G:0.23, T:0.40
Consensus pattern (46 bp):
CTCTGATTAGCACTGTGTGTGCCCTCTGTTCAGCACTTCGTGTGCC
Found at i:26632266 original size:73 final size:73
Alignment explanation
Indices: 26632129--26632275 Score: 192
Period size: 73 Copynumber: 2.0 Consensus size: 73
26632119 GCGCTCTCTG
** * *
26632129 ATTAGCACTGTGTGTGCCCTCTGTTCAGCACTGTGTGTGCCCTCTGTTATTAGCACTGTGTGTGC
1 ATTAGCACTGTGTGTGCCCTCTGTTCAGCACTGTGTGTGCCCTCTGTTACCAACACTGTATGTGC
26632194 CCTCTATT
66 CCTCTATT
* *
26632202 ATTAGCACT-TCGTGTGCCCTCTGGTT-AGCACTTTGTGTGTCCTCTGTTACCCAACACT-TATG
1 ATTAGCACTGT-GTGTGCCCTCT-GTTCAGCACTGTGTGTGCCCTCTGTTA-CCAACACTGTATG
26632264 TGCCCTCTATT
63 TGCCCTCTATT
26632275 A
1 A
26632276 AGTACTTCGG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
72 1 0.02
73 56 0.86
74 8 0.12
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.38
Consensus pattern (73 bp):
ATTAGCACTGTGTGTGCCCTCTGTTCAGCACTGTGTGTGCCCTCTGTTACCAACACTGTATGTGC
CCTCTATT
Found at i:26632429 original size:28 final size:28
Alignment explanation
Indices: 26632393--26632447 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
26632383 GAAAAGTGAA
26632393 AGAAGGTGCAAATTATGATATTGAGGTG
1 AGAAGGTGCAAATTATGATATTGAGGTG
*
26632421 AGAATGTGCAAATTATGATATTGAGGT
1 AGAAGGTGCAAATTATGATATTGAGGT
26632448 AAGTGAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.36, C:0.04, G:0.29, T:0.31
Consensus pattern (28 bp):
AGAAGGTGCAAATTATGATATTGAGGTG
Found at i:26637487 original size:24 final size:24
Alignment explanation
Indices: 26637460--26637510 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
26637450 AATTTGACTC
*
26637460 AAACAACTAAACAGAGTTTAACTG
1 AAACAAATAAACAGAGTTTAACTG
26637484 AAACAAATAAACAGAGTTTAACTG
1 AAACAAATAAACAGAGTTTAACTG
26637508 AAA
1 AAA
26637511 GATTATTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.55, C:0.14, G:0.12, T:0.20
Consensus pattern (24 bp):
AAACAAATAAACAGAGTTTAACTG
Found at i:26639484 original size:24 final size:24
Alignment explanation
Indices: 26639450--26639500 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
26639440 AATTTGACTC
* *
26639450 AAACAACTAAACAGAGTTTAATTG
1 AAACAAATAAACAGAGTTTAACTG
26639474 AAACAAATAAACAGAGTTTAACTG
1 AAACAAATAAACAGAGTTTAACTG
26639498 AAA
1 AAA
26639501 GATTATTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.22
Consensus pattern (24 bp):
AAACAAATAAACAGAGTTTAACTG
Found at i:26640882 original size:56 final size:57
Alignment explanation
Indices: 26640749--26640899 Score: 171
Period size: 56 Copynumber: 2.6 Consensus size: 57
26640739 TATATTATGA
* * *
26640749 TTTTTATTAATTCATATTTTAATAATAATTATATTAAGAATGTTATTAAATTATATACT
1 TTTTTATTAATT-ATA-TTTAATAATAATCATATTAAGAATATGATTAAATTATATACT
* * * * *
26640808 CTTTTATTCAATTGTATTTAATAATAATCATGTTAA-AATATGGTTAAATTATTTA-T
1 TTTTTATT-AATTATATTTAATAATAATCATATTAAGAATATGATTAAATTATATACT
*
26640864 TTTTTATTAAATTATATTTAATAATAATCTTATTAA
1 TTTTTATT-AATTATATTTAATAATAATCATATTAA
26640900 ATTTTAACAA
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
56 32 0.41
57 15 0.19
58 18 0.23
59 9 0.12
60 4 0.05
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.52
Consensus pattern (57 bp):
TTTTTATTAATTATATTTAATAATAATCATATTAAGAATATGATTAAATTATATACT
Found at i:26641089 original size:16 final size:16
Alignment explanation
Indices: 26641068--26641123 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
26641058 TGAAATATTG
* *
26641068 ATTACAGCCCTATTTC
1 ATTACAGCTCTATTAC
*
26641084 ATTACAGTTCTATTAC
1 ATTACAGCTCTATTAC
*
26641100 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTAC
26641116 ATTACAGC
1 ATTACAGC
26641124 GAACCAAACG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTAC
Found at i:26643944 original size:25 final size:25
Alignment explanation
Indices: 26643915--26643978 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
26643905 TTTTGCTTTT
26643915 CTTTGCTTTATATTGCTTTATATTG
1 CTTTGCTTTATATTGCTTTATATTG
* * *
26643940 TTTTGCTTTGCT-TTGGTTTATATTG
1 CTTTGCTTT-ATATTGCTTTATATTG
*
26643965 CCTTGCTTTATATT
1 CTTTGCTTTATATT
26643979 ATTATTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
24 1 0.03
25 29 0.94
26 1 0.03
ACGTcount: A:0.12, C:0.12, G:0.14, T:0.61
Consensus pattern (25 bp):
CTTTGCTTTATATTGCTTTATATTG
Found at i:26643980 original size:20 final size:20
Alignment explanation
Indices: 26643927--26643980 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
26643917 TTGCTTTATA
* * *
26643927 TTGCTTTATATTGTTTTGCT
1 TTGCTTTATATTATATTGCC
*
26643947 TTGCTTTGGT-TTATATTGCC
1 TTGCTTT-ATATTATATTGCC
26643967 TTGCTTTATATTAT
1 TTGCTTTATATTAT
26643981 TATTTTTTAC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
19 1 0.04
20 25 0.93
21 1 0.04
ACGTcount: A:0.13, C:0.11, G:0.15, T:0.61
Consensus pattern (20 bp):
TTGCTTTATATTATATTGCC
Found at i:26646853 original size:18 final size:18
Alignment explanation
Indices: 26646830--26646864 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26646820 AAGGAGGAAG
26646830 ATAGTGCTAATTTTTCAA
1 ATAGTGCTAATTTTTCAA
26646848 ATAGTGCTAATTTTTCA
1 ATAGTGCTAATTTTTCA
26646865 CGTCAATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.46
Consensus pattern (18 bp):
ATAGTGCTAATTTTTCAA
Found at i:26647108 original size:20 final size:20
Alignment explanation
Indices: 26647083--26647122 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26647073 AAAATAAAAA
26647083 CATAAACTCCAATAACTAAT
1 CATAAACTCCAATAACTAAT
26647103 CATAAACTCCAATAACTAAT
1 CATAAACTCCAATAACTAAT
26647123 GGCATCCGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (20 bp):
CATAAACTCCAATAACTAAT
Found at i:26647292 original size:25 final size:25
Alignment explanation
Indices: 26647259--26647317 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 25
26647249 ATCTATTGCT
26647259 CTTTGCTTTGCTTTGCTTTATATTA
1 CTTTGCTTTGCTTTGCTTTATATTA
* *
26647284 CTTTCCTTTGCTTTTCTTTATATTA
1 CTTTGCTTTGCTTTGCTTTATATTA
*
26647309 TTTTGCTTT
1 CTTTGCTTT
26647318 ATATTGCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.10, C:0.17, G:0.08, T:0.64
Consensus pattern (25 bp):
CTTTGCTTTGCTTTGCTTTATATTA
Found at i:26647327 original size:25 final size:25
Alignment explanation
Indices: 26647259--26647327 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
26647249 ATCTATTGCT
* *
26647259 CTTTGCTTTGCTTTGCTTTATATTA
1 CTTTCCTTTGATTTGCTTTATATTA
* *
26647284 CTTTCCTTTGCTTTTCTTTATATTA
1 CTTTCCTTTGATTTGCTTTATATTA
* *
26647309 TTTTGCTTT-ATATTGCTTT
1 CTTTCCTTTGAT-TTGCTTT
26647328 GCTTCATCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.12, C:0.16, G:0.09, T:0.64
Consensus pattern (25 bp):
CTTTCCTTTGATTTGCTTTATATTA
Found at i:26647328 original size:15 final size:15
Alignment explanation
Indices: 26647291--26647331 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
26647281 TTACTTTCCT
*
26647291 TTGCTTTTCTTTATA
1 TTGCTTTGCTTTATA
**
26647306 TTATTTTGCTTTATA
1 TTGCTTTGCTTTATA
26647321 TTGCTTTGCTT
1 TTGCTTTGCTT
26647332 CATCATTGTA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.12, C:0.12, G:0.10, T:0.66
Consensus pattern (15 bp):
TTGCTTTGCTTTATA
Found at i:26648468 original size:27 final size:27
Alignment explanation
Indices: 26648417--26648471 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
26648407 GTTATTATAG
* *
26648417 AGCAAAGAGCAAAGCAAAGCCAAGCAA
1 AGCAAAGAGCAAAACAAAGCAAAGCAA
* *
26648444 AGCAAAGAGCAAAACAAGGTAAAGCAA
1 AGCAAAGAGCAAAACAAAGCAAAGCAA
26648471 A
1 A
26648472 TTGAACTCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.58, C:0.18, G:0.22, T:0.02
Consensus pattern (27 bp):
AGCAAAGAGCAAAACAAAGCAAAGCAA
Found at i:26648743 original size:56 final size:56
Alignment explanation
Indices: 26648657--26648764 Score: 216
Period size: 56 Copynumber: 1.9 Consensus size: 56
26648647 TTGAAAGCAC
26648657 GCAGTAGGGTGAAAGACAACATATGCTGGGAAGAAGGTGATCTCGAGGAATTGCAT
1 GCAGTAGGGTGAAAGACAACATATGCTGGGAAGAAGGTGATCTCGAGGAATTGCAT
26648713 GCAGTAGGGTGAAAGACAACATATGCTGGGAAGAAGGTGATCTCGAGGAATT
1 GCAGTAGGGTGAAAGACAACATATGCTGGGAAGAAGGTGATCTCGAGGAATT
26648765 TGGGCTTTGG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.19
Consensus pattern (56 bp):
GCAGTAGGGTGAAAGACAACATATGCTGGGAAGAAGGTGATCTCGAGGAATTGCAT
Found at i:26652944 original size:5 final size:5
Alignment explanation
Indices: 26652936--26653062 Score: 67
Period size: 5 Copynumber: 24.2 Consensus size: 5
26652926 CATATAATAT
* ** *
26652936 AAAGC AAAGC AAAGC AAATC AAAGC AATATAA AAAGC AAAGC AAAGC AGAGC
1 AAAGC AAAGC AAAGC AAAGC AAAGC AA-A-GC AAAGC AAAGC AAAGC AAAGC
** * * ** **
26652988 AATATAA AAAGC AAAGA AAATC AAAGC AATATAA AAAGC AAAGC AAATA
1 AA-A-GC AAAGC AAAGC AAAGC AAAGC AA-A-GC AAAGC AAAGC AAAGC
*
26653037 AAAGC AATA-T AAAGC AAAGC AAAGC A
1 AAAGC AA-AGC AAAGC AAAGC AAAGC A
26653063 CAACACATCA
Statistics
Matches: 88, Mismatches: 26, Indels: 16
0.68 0.20 0.12
Matches are distributed among these distances:
4 1 0.01
5 74 0.84
6 7 0.08
7 6 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (5 bp):
AAAGC
Found at i:26652979 original size:27 final size:26
Alignment explanation
Indices: 26652941--26653197 Score: 209
Period size: 27 Copynumber: 9.5 Consensus size: 26
26652931 AATATAAAGC
26652941 AAAGCAAAGCAAATCAAAGCAATATAA
1 AAAGCAAAGCAAA-CAAAGCAATATAA
*
26652968 AAAGCAAAGCAAAGCAGAGCAATATAA
1 AAAGCAAAGCAAA-CAAAGCAATATAA
*
26652995 AAAGCAAAGAAAATCAAAGCAATATAA
1 AAAGCAAAGCAAA-CAAAGCAATATAA
*
26653022 AAAGCAAAGCAAATAAAAGCAATATAAA
1 AAAGCAAAGCAAA-CAAAGCAATAT-AA
* *
26653050 GCAAAGCAAAGCACAACACATCAATATAA
1 --AAAGCAAAGCA-AACAAAGCAATATAA
*
26653079 AAAGC--A-C-AAC-ACGACAATATAA
1 AAAGCAAAGCAAACAAAG-CAATATAA
* * *
26653101 AAAGCAAAACAAAGCAAAGCAAAGCAAAA
1 AAAGCAAAGCAAA-CAAAGC-AA-TATAA
**
26653130 CAAAATAAAGCACAACAAAGCAATATAA
1 -AAAGCAAAGCA-AACAAAGCAATATAA
* **
26653158 AAAGCAAGGCAAAGCAAAATAATATAA
1 AAAGCAAAGCAAA-CAAAGCAATATAA
*
26653185 AAAGAAAAGCAAA
1 AAAGCAAAGCAAA
26653198 GAAATATAAA
Statistics
Matches: 186, Mismatches: 28, Indels: 32
0.76 0.11 0.13
Matches are distributed among these distances:
22 16 0.09
24 2 0.01
25 2 0.01
26 4 0.02
27 109 0.59
28 9 0.05
29 7 0.04
30 33 0.18
31 4 0.02
ACGTcount: A:0.64, C:0.16, G:0.12, T:0.09
Consensus pattern (26 bp):
AAAGCAAAGCAAACAAAGCAATATAA
Found at i:26653085 original size:22 final size:22
Alignment explanation
Indices: 26653057--26653111 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
26653047 AAAGCAAAGC
26653057 AAAGCACAACAC-ATCAATATAA
1 AAAGCACAACACGA-CAATATAA
26653079 AAAGCACAACACGACAATATAA
1 AAAGCACAACACGACAATATAA
*
26653101 AAAGCAAAACA
1 AAAGCACAACA
26653112 AAGCAAAGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 30 0.97
23 1 0.03
ACGTcount: A:0.62, C:0.22, G:0.07, T:0.09
Consensus pattern (22 bp):
AAAGCACAACACGACAATATAA
Found at i:26653104 original size:79 final size:81
Alignment explanation
Indices: 26652941--26653163 Score: 235
Period size: 79 Copynumber: 2.8 Consensus size: 81
26652931 AATATAAAGC
*
26652941 AAAGCAAAGCAAATCAAAGCAATAT-AA-AAAGCAAAGCA-AAGCAGAGCAATATAAAAAGCAAA
1 AAAGCAAAGCAAATCAAAGCAATATAAACAAAGCAAAGCACAA-CAAAGCAATATAAAAAGC--A
*
26653003 GAAAATCAAAGCAATATAA
63 CAAAATCAAAGCAATATAA
* * *
26653022 AAAGCAAAGCAAATAAAAGCAATATAAAGCAAAGCAAAGCACAACACATCAATATAAAAAGCACA
1 AAAGCAAAGCAAATCAAAGCAATATAAA-CAAAGCAAAGCACAACAAAGCAATATAAAAAGCACA
* *
26653087 ACA-C-GA-CAATATAA
65 AAATCAAAGCAATATAA
* * * **
26653101 AAAGCAAAACAAAGCAAAGCAA-AGCAAAACAAAATAAAGCACAACAAAGCAATATAAAAAGCA
1 AAAGCAAAGCAAATCAAAGCAATA--TAAACAAAGCAAAGCACAACAAAGCAATATAAAAAGCA
26653164 AGGCAAAGCA
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 57 0.47
80 4 0.03
81 25 0.20
82 6 0.05
84 27 0.22
85 2 0.02
ACGTcount: A:0.63, C:0.17, G:0.12, T:0.09
Consensus pattern (81 bp):
AAAGCAAAGCAAATCAAAGCAATATAAACAAAGCAAAGCACAACAAAGCAATATAAAAAGCACAA
AATCAAAGCAATATAA
Found at i:26653118 original size:5 final size:5
Alignment explanation
Indices: 26653101--26653175 Score: 53
Period size: 5 Copynumber: 14.6 Consensus size: 5
26653091 GACAATATAA
* * **
26653101 AAAGC AAAAC AAAGC AAAGC AAAGC AAAAC AAAAT AAAGC ACAA-C AAAGC
1 AAAGC AAAGC AAAGC AAAGC AAAGC AAAGC AAAGC AAAGC A-AAGC AAAGC
** *
26653151 AATATAA AAAGC AAGGC AAAGC AAA
1 AA-A-GC AAAGC AAAGC AAAGC AAA
26653176 ATAATATAAA
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
4 2 0.04
5 46 0.85
6 4 0.07
7 2 0.04
ACGTcount: A:0.65, C:0.17, G:0.13, T:0.04
Consensus pattern (5 bp):
AAAGC
Found at i:26653139 original size:20 final size:20
Alignment explanation
Indices: 26653101--26653179 Score: 70
Period size: 20 Copynumber: 3.9 Consensus size: 20
26653091 GACAATATAA
**
26653101 AAAGCAAAACAAAGCAAAGC
1 AAAGCAAAACAAAATAAAGC
26653121 AAAGCAAAACAAAATAAAGC
1 AAAGCAAAACAAAATAAAGC
* *
26653141 ACAA-CAAAGCAATATAAAAAGC
1 A-AAGCAAAACAA-A-ATAAAGC
* *
26653163 AAGGCAAAGCAAAATAA
1 AAAGCAAAACAAAATAA
26653180 TATAAAAAGA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
20 29 0.59
21 5 0.10
22 15 0.31
ACGTcount: A:0.66, C:0.16, G:0.13, T:0.05
Consensus pattern (20 bp):
AAAGCAAAACAAAATAAAGC
Found at i:26653198 original size:27 final size:28
Alignment explanation
Indices: 26652927--26653226 Score: 113
Period size: 27 Copynumber: 11.0 Consensus size: 28
26652917 CAGCAATATC
26652927 ATATAATAT--AAAGCAAAGCAAAGCAA
1 ATATAATATAAAAAGCAAAGCAAAGCAA
* *
26652953 ATCAAAGCAATATAAAAAGCAAAGCAAAGCAG
1 AT---A-TAATATAAAAAGCAAAGCAAAGCAA
** * *
26652985 A-GCAATATAAAAAGCAAAGAAAATCAA
1 ATATAATATAAAAAGCAAAGCAAAGCAA
** *
26653012 A-GCAATATAAAAAGCAAAGCAAA-TAA
1 ATATAATATAAAAAGCAAAGCAAAGCAA
*
26653038 A-AGCAATAT--AAAGCAAAGCAAAGCACAA
1 ATA-TAATATAAAAAGCAAAGCAAAG--CAA
* *
26653066 CACATCAATATAAAAAGCACAA-C-ACG-ACA
1 -ATAT-AATATAAAAAGCA-AAGCAAAGCA-A
*
26653095 ATATAA-A-AAGCAAAACAAAGCAAAGCAA
1 ATATAATATAA--AAAGCAAAGCAAAGCAA
* * *
26653123 AGCA-AA-A-CAAAA-TAAAGCACAA-CAA
1 A-TATAATATAAAAAGCAAAGCA-AAGCAA
** *
26653148 A-GCAATATAAAAAGCAAGGCAAAGCAA
1 ATATAATATAAAAAGCAAAGCAAAGCAA
*
26653175 A-ATAATATAAAAAGAAAAGCAAAG-AA
1 ATATAATATAAAAAGCAAAGCAAAGCAA
* *
26653201 ATATAAAAGAAAAA-CAAAGCAAAGCA
1 ATATAATATAAAAAGCAAAGCAAAGCA
26653227 CATCACAACA
Statistics
Matches: 214, Mismatches: 29, Indels: 61
0.70 0.10 0.20
Matches are distributed among these distances:
24 2 0.01
25 26 0.12
26 31 0.14
27 97 0.45
28 14 0.07
29 5 0.02
30 11 0.05
31 2 0.01
32 24 0.11
33 2 0.01
ACGTcount: A:0.64, C:0.15, G:0.12, T:0.09
Consensus pattern (28 bp):
ATATAATATAAAAAGCAAAGCAAAGCAA
Found at i:26653210 original size:21 final size:23
Alignment explanation
Indices: 26653168--26653219 Score: 74
Period size: 21 Copynumber: 2.4 Consensus size: 23
26653158 AAAGCAAGGC
26653168 AAAGCAAA-ATAATATAAAAAGA
1 AAAGCAAAGATAATATAAAAAGA
26653190 AAAGCAAAGA-AATAT-AAAAGA
1 AAAGCAAAGATAATATAAAAAGA
*
26653211 AAAACAAAG
1 AAAGCAAAG
26653220 CAAAGCACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 14 0.50
22 13 0.46
23 1 0.04
ACGTcount: A:0.73, C:0.06, G:0.12, T:0.10
Consensus pattern (23 bp):
AAAGCAAAGATAATATAAAAAGA
Found at i:26653271 original size:22 final size:22
Alignment explanation
Indices: 26653166--26653272 Score: 58
Period size: 22 Copynumber: 4.8 Consensus size: 22
26653156 AAAAAGCAAG
* *
26653166 GCAAAGCAAAATAATATAAAAA
1 GCAAAGCAAAGTAACATAAAAA
* * *
26653188 GAAAAGCAAAGAAATATAAAAGAAAA
1 GCAAAGCAAAGTAACAT---A-AAAA
* * * *
26653214 ACAAAGCAAAG-CACATCACAA
1 GCAAAGCAAAGTAACATAAAAA
*
26653235 -CACAA-CAAAGCAACATAAAAA
1 GCA-AAGCAAAGTAACATAAAAA
26653256 GCAAAGCAAAGTAACAT
1 GCAAAGCAAAGTAACAT
26653273 TTTTACAAAT
Statistics
Matches: 64, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
20 7 0.11
21 14 0.22
22 26 0.41
25 4 0.06
26 13 0.20
ACGTcount: A:0.64, C:0.16, G:0.11, T:0.08
Consensus pattern (22 bp):
GCAAAGCAAAGTAACATAAAAA
Found at i:26654608 original size:3 final size:3
Alignment explanation
Indices: 26654602--26654644 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
26654592 ATTATTATTA
* *
26654602 TTG TTG TTG TTG TTG TTG CTG TTG TTG TTG CTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
26654645 GTATAGGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.05, G:0.33, T:0.63
Consensus pattern (3 bp):
TTG
Found at i:26654617 original size:12 final size:12
Alignment explanation
Indices: 26654602--26654643 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
26654592 ATTATTATTA
*
26654602 TTGTTGTTGTTG
1 TTGTTGCTGTTG
26654614 TTGTTGCTGTTG
1 TTGTTGCTGTTG
26654626 TTGTTGCTGTTG
1 TTGTTGCTGTTG
26654638 TTGTTG
1 TTGTTG
26654644 TGTATAGGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.00, C:0.05, G:0.33, T:0.62
Consensus pattern (12 bp):
TTGTTGCTGTTG
Found at i:26662084 original size:29 final size:29
Alignment explanation
Indices: 26662028--26662319 Score: 158
Period size: 30 Copynumber: 10.0 Consensus size: 29
26662018 GCCCGGGGGA
* * *
26662028 AAAATGATAATTTTTGGAGA-TTCGAGGGT
1 AAAATGGTAATTTTTGGAAAGTT-TAGGGT
*
26662057 AAAATGGTAATTTTTTGAAAGTTTAGGGGT
1 AAAATGGTAATTTTTGGAAAGTTTA-GGGT
* * * *
26662087 AAATTAGTAATTTTTGGGAAGTTT-GTAGT
1 AAAATGGTAATTTTTGGAAAGTTTAG-GGT
*
26662116 AAAAAATGG-AAGTTTTGGAAA-TTTAGGGGT
1 --AAAATGGTAATTTTTGGAAAGTTTA-GGGT
* *
26662146 AAAATGGTAATTTTTAGAAAG-TTCGAGGT
1 AAAATGGTAATTTTTGGAAAGTTTAG-GGT
* * *
26662175 CAAAAATAG-AGTTTTTGGAAA-TTCGAGGGT
1 --AAAATGGTAATTTTTGGAAAGTT-TAGGGT
* *
26662205 AAAATGGTAATTTTTGGAATGTTTGGGGT
1 AAAATGGTAATTTTTGGAAAGTTTAGGGT
*
26662234 CAAAAATGG-AATTTTT-GAAAGTTTGGGGT
1 --AAAATGGTAATTTTTGGAAAGTTTAGGGT
* * *
26662263 AAAAAT-ATAATTTTTATG-AAGTTTGGGGGT
1 -AAAATGGTAATTTTT-GGAAAGTTT-AGGGT
** *
26662293 AAAATTATAATTTTTAGAAAG-TTAGGG
1 AAAATGGTAATTTTTGGAAAGTTTAGGG
26662320 GGTTAAAGTC
Statistics
Matches: 208, Mismatches: 31, Indels: 49
0.72 0.11 0.17
Matches are distributed among these distances:
28 31 0.15
29 78 0.38
30 79 0.38
31 20 0.10
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.37
Consensus pattern (29 bp):
AAAATGGTAATTTTTGGAAAGTTTAGGGT
Found at i:26662087 original size:30 final size:29
Alignment explanation
Indices: 26662023--26662320 Score: 200
Period size: 29 Copynumber: 10.1 Consensus size: 29
26662013 TGGATGCCCG
* * * *
26662023 GGGGAAAAATGATAATTTTTGGAGA-TTC
1 GGGGTAAAATGGTAATTTTTGGAAAGTTT
*
26662051 GAGGGTAAAATGGTAATTTTTTGAAAGTTT
1 G-GGGTAAAATGGTAATTTTTGGAAAGTTT
* * *
26662081 AGGGGTAAATTAGTAATTTTTGGGAAGTTT
1 -GGGGTAAAATGGTAATTTTTGGAAAGTTT
** *
26662111 GTAGTAAAAAATGG-AAGTTTTGGAAA-TTT
1 GGGGT--AAAATGGTAATTTTTGGAAAGTTT
* *
26662140 AGGGGTAAAATGGTAATTTTTAGAAAGTTC
1 -GGGGTAAAATGGTAATTTTTGGAAAGTTT
* * * *
26662170 GAGGTCAAAAATAG-AGTTTTTGGAAA-TTC
1 GGGGT--AAAATGGTAATTTTTGGAAAGTTT
*
26662199 GAGGGTAAAATGGTAATTTTTGGAATGTTT
1 G-GGGTAAAATGGTAATTTTTGGAAAGTTT
26662229 GGGGTCAAAAATGG-AATTTTT-GAAAGTTT
1 GGGGT--AAAATGGTAATTTTTGGAAAGTTT
* *
26662258 GGGGTAAAAAT-ATAATTTTTATG-AAGTTT
1 GGGGT-AAAATGGTAATTTTT-GGAAAGTTT
** * *
26662287 GGGGGTAAAATTATAATTTTTAGAAAGTTA
1 -GGGGTAAAATGGTAATTTTTGGAAAGTTT
26662317 GGGG
1 GGGG
26662321 GTTAAAGTCT
Statistics
Matches: 216, Mismatches: 33, Indels: 41
0.74 0.11 0.14
Matches are distributed among these distances:
28 27 0.12
29 86 0.40
30 84 0.39
31 19 0.09
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (29 bp):
GGGGTAAAATGGTAATTTTTGGAAAGTTT
Found at i:26662292 original size:59 final size:58
Alignment explanation
Indices: 26662023--26662290 Score: 212
Period size: 59 Copynumber: 4.6 Consensus size: 58
26662013 TGGATGCCCG
* *
26662023 GGGGAAAAATGATAATTTTT-GG-AGATTCGAGGGT--AAAATGGTAATTTTTTGAAAGTTT
1 GGGGTAAAATGATAATTTTTAGGAAG-TTTG-GGGTCAAAAATGG-AA-TTTTTGAAAGTTT
* * ** * *
26662081 AGGGGT-AAATTAGTAATTTTTGGGAAGTTTGTAGTAAAAAATGGAAGTTTTGGAAA-TTT
1 -GGGGTAAAATGA-TAATTTTTAGGAAGTTTGGGGTCAAAAATGGAA-TTTTTGAAAGTTT
* * * * * * *
26662140 AGGGGTAAAATGGTAATTTTTAGAAAGTTCGAGGTCAAAAATAGAGTTTTTGGAAA-TTC
1 -GGGGTAAAATGATAATTTTTAGGAAGTTTGGGGTCAAAAATGGAATTTTT-GAAAGTTT
*
26662199 GAGGGTAAAATGGTAATTTTT-GGAATGTTTGGGGTCAAAAATGGAATTTTTGAAAGTTT
1 G-GGGTAAAATGATAATTTTTAGGAA-GTTTGGGGTCAAAAATGGAATTTTTGAAAGTTT
*
26662258 GGGGTAAAAAT-ATAATTTTTATGAAGTTTGGGG
1 GGGGT-AAAATGATAATTTTTAGGAAGTTTGGGG
26662291 GTAAAATTAT
Statistics
Matches: 170, Mismatches: 27, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
58 37 0.22
59 105 0.62
60 19 0.11
61 9 0.05
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.36
Consensus pattern (58 bp):
GGGGTAAAATGATAATTTTTAGGAAGTTTGGGGTCAAAAATGGAATTTTTGAAAGTTT
Found at i:26663344 original size:34 final size:34
Alignment explanation
Indices: 26663279--26663342 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
26663269 TATTTTGGAC
* * *
26663279 TTTCAAATTTAATTTAATATTAAGTTTAAAATCA
1 TTTCAAATTTAACTAAATATTAAATTTAAAATCA
26663313 TTTCAAATTTAACTAAAT-TTAAATTTAAAA
1 TTTCAAATTTAACTAAATATTAAATTTAAAA
26663343 ATAAATTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 11 0.41
34 16 0.59
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (34 bp):
TTTCAAATTTAACTAAATATTAAATTTAAAATCA
Found at i:26664090 original size:172 final size:172
Alignment explanation
Indices: 26663780--26664150 Score: 489
Period size: 172 Copynumber: 2.2 Consensus size: 172
26663770 CAAATTTGGT
* * * *
26663780 TCACTTATCTGCGTCTCGTCAGGAA-AGTAATCGCTTCATTGCTTCGACCTACTTCTCAGTATCT
1 TCACTTCTCTGTGTCTCATCAGGAAGAGTAACCGCTTCATTGCTTCGACCTACTTCTCAGTATCT
* *
26663844 CATCAAGAAGCTGGGGTTCGAAGATTTGCTCACTTTAAGCCTAGTTTCGTTGATTTAGTCTACCT
66 CATCAAGAAGCTGGGGTTCGAAGATTTGCTCACTTTAAGCCGAGTTTCATTGATTTAGTCTACCT
* *
26663909 CTCAGTATCTCATCGGGAAGATGACCGTATCACTTGTTTTGAA
131 CTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTG-A
* * * *
26663952 TCACTTCTCTGTGTCTCATCAGGAAGA-TAACCGCTTTATTGCTTCGACTTGCTTCTTAGTATCT
1 TCACTTCTCTGTGTCTCATCAGGAAGAGTAACCGCTTCATTGCTTCGACCTACTTCTCAGTATCT
* *
26664016 CATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCCCGA-TTTCATTGATTT-GATCTAC
66 CATCAAGAAGCTGGGGTTCGAAGATTTGCTCACTTTAAG-CCGAGTTTCATTGATTTAG-TCTAC
* * *** *
26664079 TTCTTAGTATCTCATCAGGAAGATGACCGCATTGTTTTTTTTGA
129 CTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTGA
*
26664123 TCCACTTCTCTGTGTCTCATCAAGAAGA
1 T-CACTTCTCTGTGTCTCATCAGGAAGA
26664151 CGGATCTGGT
Statistics
Matches: 174, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
171 3 0.02
172 167 0.96
173 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (172 bp):
TCACTTCTCTGTGTCTCATCAGGAAGAGTAACCGCTTCATTGCTTCGACCTACTTCTCAGTATCT
CATCAAGAAGCTGGGGTTCGAAGATTTGCTCACTTTAAGCCGAGTTTCATTGATTTAGTCTACCT
CTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTGA
Found at i:26664316 original size:209 final size:209
Alignment explanation
Indices: 26663953--26664731 Score: 945
Period size: 209 Copynumber: 3.7 Consensus size: 209
26663943 TGTTTTGAAT
* * * * *
26663953 CACTTCTCTGTGTCTCATCAGGAAGATAACCGCTTTATTGCTTCGACTTGCTTCTTAGTATCTCA
1 CACTTCTCAGTATCTCATCAGGAAGCTAACTGCTTTATTGCTTCGACTTGCTTCTCAGTATCTCA
* * *
26664018 TCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCCCGATTTCATTGATTTGATCTACTTCT
66 TCAGGAAGCTGGGGTTCGAAGATTTGCTCAATTTGAGCCTGATTTCATTGATTTGGTCTACTTCT
* *** * ** *
26664083 TAGTATCTCATCAGGAAGATGACCGCATTGTTTTTTTTGATCCACTTCTCTGTGTCTCATCAAGA
131 CAGTATCTCATCAGGAAGATGACCGCATCACTTATTTCAATCCACTTCTCTGTATCTCATCAAGA
* * *
26664148 AGACGGATCTGGTT
196 AGACGAATTTGGTC
** * * * *
26664162 CACTTCTTTGTATCTCATCAGGAAGGTAACTGCTTTATTGCTTCTACTTGCTTCTTAATATCTCA
1 CACTTCTCAGTATCTCATCAGGAAGCTAACTGCTTTATTGCTTCGACTTGCTTCTCAGTATCTCA
* **
26664227 TCAGGAAGCTGGGGCTCGAAGATTTGCTCAATTTGAGCCTGATTTTGTTGATTTGGTCTACTTCT
66 TCAGGAAGCTGGGGTTCGAAGATTTGCTCAATTTGAGCCTGATTTCATTGATTTGGTCTACTTCT
* * * *
26664292 CAGTATCTCATCAGGAAAATGACCGCATCACTTATTTCAATCCGCTTTTCTATATCTCATCAAGA
131 CAGTATCTCATCAGGAAGATGACCGCATCACTTATTTCAATCCACTTCTCTGTATCTCATCAAGA
* *
26664357 AGACTAATTTGGCC
196 AGACGAATTTGGTC
* * *
26664371 CTCTTCTCAATATCTCATCAGGAAGCTAAACAT--TTTATTGCTTCGACCTGCTTCTCAGTATCT
1 CACTTCTCAGTATCTCATCAGGAAGCT-AAC-TGCTTTATTGCTTCGACTTGCTTCTCAGTATCT
* * * * * ** *
26664434 TATCAAGAAGCTGGGGTTTGAAGATTCGCTCACTTTGAGCCTGGCTTCATTGATTTCGTCTACTT
64 CATCAGGAAGCTGGGGTTCGAAGATTTGCTCAATTTGAGCCTGATTTCATTGATTTGGTCTACTT
* * * *
26664499 CTCAGTATCTCATCAGGAAGATGATCGCATCACTTGTTTCAATCCAGTTCTCTGTATCTCATCAG
129 CTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTCAATCCACTTCTCTGTATCTCATCAA
26664564 GAAGACGAATTTGGTC
194 GAAGACGAATTTGGTC
* ** *
26664580 CACTTCTCAGTATCTCATCAAGAAGCTAACTATTTTATTGCTTCGACTTGCTTATCAGTATCTCA
1 CACTTCTCAGTATCTCATCAGGAAGCTAACTGCTTTATTGCTTCGACTTGCTTCTCAGTATCTCA
* * * * * *
26664645 TCAGGAAGCTAGGGTTCGAAGATTTTCTCACA-TTGAGCTTTG-TTTCATCGAGTTGGTATACTT
66 TCAGGAAGCTGGGGTTCGAAGATTTGCTCA-ATTTGAGC-CTGATTTCATTGATTTGGTCTACTT
* *
26664708 CTCTGTATCTCATTAGGAAGATGA
129 CTCAGTATCTCATCAGGAAGATGA
26664732 TCGCCTTGCT
Statistics
Matches: 485, Mismatches: 79, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
207 1 0.00
208 3 0.01
209 475 0.98
210 5 0.01
211 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (209 bp):
CACTTCTCAGTATCTCATCAGGAAGCTAACTGCTTTATTGCTTCGACTTGCTTCTCAGTATCTCA
TCAGGAAGCTGGGGTTCGAAGATTTGCTCAATTTGAGCCTGATTTCATTGATTTGGTCTACTTCT
CAGTATCTCATCAGGAAGATGACCGCATCACTTATTTCAATCCACTTCTCTGTATCTCATCAAGA
AGACGAATTTGGTC
Found at i:26675973 original size:29 final size:29
Alignment explanation
Indices: 26675939--26676091 Score: 161
Period size: 29 Copynumber: 5.3 Consensus size: 29
26675929 GTTAAAAAAA
26675939 TAATTTTTGGATGCTCGAGGGTAAAATGG
1 TAATTTTTGGATGCTCGAGGGTAAAATGG
*
26675968 TAATTTTTGGA-GATTCGAGGGTAAAATGG
1 TAATTTTTGGATG-CTCGAGGGTAAAATGG
** * ***
26675997 TAATTTTTGGACACTCGGGGGTAAAAACA
1 TAATTTTTGGATGCTCGAGGGTAAAATGG
*
26676026 TAATTTTTGGAT-ATCCGA-GGTAAAAAT-G
1 TAATTTTTGGATGCT-CGAGGGT-AAAATGG
* *
26676054 TAATTTTTGGAAGTTCGAGGGTAAAATGG
1 TAATTTTTGGATGCTCGAGGGTAAAATGG
26676083 TAATTTTTG
1 TAATTTTTG
26676092 AGAAGTTCAA
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
28 24 0.23
29 79 0.77
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (29 bp):
TAATTTTTGGATGCTCGAGGGTAAAATGG
Found at i:26676077 original size:86 final size:87
Alignment explanation
Indices: 26675931--26676091 Score: 249
Period size: 86 Copynumber: 1.9 Consensus size: 87
26675921 CGAACAGAGT
26675931 TAAAAAAATAATTTTTGGATGCTCGAGGGTAAAATGGTAATTTTTGGAGATTCGAGGGTAAAATG
1 TAAAAAAATAATTTTTGGATGCTCGAGGGTAAAATGGTAATTTTTGGAGATTCGAGGGTAAAATG
26675996 GTAATTTTTGGACACTCGGGGG
66 GTAATTTTTGGACACTCGGGGG
* *
26676018 TAAAAACATAATTTTTGGAT-ATCCGA-GGTAAAAAT-GTAATTTTTGGA-AGTTCGAGGGTAAA
1 TAAAAAAATAATTTTTGGATGCT-CGAGGGT-AAAATGGTAATTTTTGGAGA-TTCGAGGGTAAA
26676079 ATGGTAATTTTTG
63 ATGGTAATTTTTG
26676092 AGAAGTTCAA
Statistics
Matches: 69, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
85 1 0.01
86 41 0.59
87 27 0.39
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.34
Consensus pattern (87 bp):
TAAAAAAATAATTTTTGGATGCTCGAGGGTAAAATGGTAATTTTTGGAGATTCGAGGGTAAAATG
GTAATTTTTGGACACTCGGGGG
Found at i:26676106 original size:29 final size:29
Alignment explanation
Indices: 26675956--26676359 Score: 243
Period size: 29 Copynumber: 13.9 Consensus size: 29
26675946 TGGATGCTCG
*
26675956 AGGGTAAAATGGTAATTTTTG-GAGATTC
1 AGGGTAAAATGGTAATTTTTGAGAAATTC
* *
26675984 GAGGGTAAAATGGTAATTTTTG-GACACTC
1 -AGGGTAAAATGGTAATTTTTGAGAAATTC
* *** *
26676013 GGGGGTAAAAACATAATTTTTG-GATA-TC
1 -AGGGTAAAATGGTAATTTTTGAGAAATTC
* *
26676041 CGAGGTAAAAAT-GTAATTTTTG-GAAGTTC
1 AG-GGT-AAAATGGTAATTTTTGAGAAATTC
*
26676070 GAGGGTAAAATGGTAATTTTTGAGAAGTTC
1 -AGGGTAAAATGGTAATTTTTGAGAAATTC
** * *
26676100 AAAGTAAAAAAT-GAAAGTTTTG-GAAATTC
1 AGGGT--AAAATGGTAATTTTTGAGAAATTC
* * *
26676129 GGGGGTAAAATGGTAATTTTTGAAAAATTT
1 -AGGGTAAAATGGTAATTTTTGAGAAATTC
* * * *
26676159 GGGGTTAAAAATGG-AGTTTTTGAAAAATTA
1 AGGG-T-AAAATGGTAATTTTTGAGAAATTC
*
26676189 AGGGTAAAATGGTAATTTTT-AGAAAATTT
1 AGGGTAAAATGGTAATTTTTGAG-AAATTC
26676218 AGGGTTAAAAT-GTAATTTTTGA-AAATTC
1 AGGG-TAAAATGGTAATTTTTGAGAAATTC
26676246 GAGGGTAAAATGGTAA-TTTTG-GAAAGTTC
1 -AGGGTAAAATGGTAATTTTTGAGAAA-TTC
* *
26676275 AAGGTCAAAAATGG-AATTTTT-AGAAGTTC
1 AGGGT--AAAATGGTAATTTTTGAGAAATTC
* *
26676304 GAGGGTAAAAT-GTAATTTTTTGTGAAGTTC
1 -AGGGTAAAATGGTAA-TTTTTGAGAAATTC
*
26676334 AAGGGCAAAAAT-GTAATTTTT-AGAAA
1 -AGGG-TAAAATGGTAATTTTTGAGAAA
26676360 GTTTATGGTC
Statistics
Matches: 305, Mismatches: 40, Indels: 60
0.75 0.10 0.15
Matches are distributed among these distances:
27 2 0.01
28 64 0.21
29 136 0.45
30 82 0.27
31 21 0.07
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.34
Consensus pattern (29 bp):
AGGGTAAAATGGTAATTTTTGAGAAATTC
Found at i:26676135 original size:59 final size:58
Alignment explanation
Indices: 26675939--26676359 Score: 338
Period size: 58 Copynumber: 7.2 Consensus size: 58
26675929 GTTAAAAAAA
*** *
26675939 TAATTTTTGGATGCTCGAGGGTAAAATGGTAATTTTTG-G-AGATTCGAGGGT-AAAATGG
1 TAATTTTTGGAAATTCGAGGGTAAAATGGTAATTTTTGAGAAG-TTC-AAGGTAAAAAT-G
* * * *** * *
26675997 TAATTTTTGGACACTCGGGGGTAAAAACATAATTTTTG-GATA-TCCGAGGTAAAAATG
1 TAATTTTTGGAAATTCGAGGGTAAAATGGTAATTTTTGAGA-AGTTCAAGGTAAAAATG
* *
26676054 TAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGAGAAGTTCAAAGTAAAAAATG
1 TAATTTTTGGAAATTCGAGGGTAAAATGGTAATTTTTGAGAAGTTCAAGGT-AAAAATG
* * * * * ***
26676113 AAAGTTTTGGAAATTCGGGGGTAAAATGGTAATTTTTGAAAAATTTGGGGTTAAAAATG
1 TAATTTTTGGAAATTCGAGGGTAAAATGGTAATTTTTGAGAAGTTCAAGG-TAAAAATG
* * * * * * * *
26676172 GAGTTTTTGAAAAATT-AAGGGTAAAATGGTAATTTTT-AGAAAATTTAGGGTTAAAATG
1 TAATTTTTG-GAAATTCGAGGGTAAAATGGTAATTTTTGAG-AAGTTCAAGGTAAAAATG
* *
26676230 TAATTTTTGAAAATTCGAGGGTAAAATGGTAATTTTGGA-AAGTTCAAGGTCAAAAATG
1 TAATTTTTGGAAATTCGAGGGTAAAATGGTAATTTTTGAGAAGTTCAAGGT-AAAAATG
* * * * *
26676288 GAATTTTTAGAAGTTCGAGGGTAAAAT-GTAATTTTTTGTGAAGTTCAAGGGCAAAAATG
1 TAATTTTTGGAAATTCGAGGGTAAAATGGTAA-TTTTTGAGAAGTTCAA-GGTAAAAATG
*
26676347 TAATTTTTAGAAA
1 TAATTTTTGGAAA
26676360 GTTTATGGTC
Statistics
Matches: 293, Mismatches: 55, Indels: 29
0.78 0.15 0.08
Matches are distributed among these distances:
57 54 0.18
58 115 0.39
59 115 0.39
60 9 0.03
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.34
Consensus pattern (58 bp):
TAATTTTTGGAAATTCGAGGGTAAAATGGTAATTTTTGAGAAGTTCAAGGTAAAAATG
Found at i:26676383 original size:59 final size:58
Alignment explanation
Indices: 26676047--26676396 Score: 176
Period size: 59 Copynumber: 6.0 Consensus size: 58
26676037 TATCCGAGGT
* * * * * **
26676047 AAAAATGTAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGAGAAGTTCAAAGTA
1 AAAAATGGAATTTTTAGAAGTTCGAGGGTAAAAT-ATAATTTTTTAGAAGTTCAAGGGC
* * * * * * * * * ** *
26676106 AAAAATGAAAGTTTTGGAAATTCGGGGGTAAAATGGTAATTTTTGAAAAATT-TGGGGTT
1 AAAAATGGAATTTTTAGAAGTTCGAGGGTAAAAT-ATAATTTTTTAGAAGTTCAAGGG-C
* * * * * * * *
26676165 AAAAATGGAGTTTTTGAAAAATT-AAGGGTAAAATGGTAA-TTTTTAGAAAATT-TAGGGT
1 AAAAATGGAATTTTT-AGAAGTTCGAGGGTAAAAT-ATAATTTTTTAG-AAGTTCAAGGGC
* * * * ** *
26676223 TAAAATGTAATTTTT-GAAAATTCGAGGGTAAAATGGTAATTTTGGA-AAGTTCAAGGTC
1 AAAAATGGAATTTTTAG-AAGTTCGAGGGTAAAAT-ATAATTTTTTAGAAGTTCAAGGGC
* *
26676281 AAAAATGGAATTTTTAGAAGTTCGAGGGTAAAATGTAATTTTTTGTGAAGTTCAAGGGC
1 AAAAATGGAATTTTTAGAAGTTCGAGGGTAAAATATAATTTTTT-AGAAGTTCAAGGGC
* * * *
26676340 AAAAATGTAATTTTTAGAAAGTT-TATGGTCAAAATATGA-TTTTTAGACAGTTCAAGG
1 AAAAATGGAATTTTTAG-AAGTTCGAGGGT-AAAATATAATTTTTTAGA-AGTTCAAGG
26676397 ACCTTCTAGG
Statistics
Matches: 233, Mismatches: 45, Indels: 26
0.77 0.15 0.09
Matches are distributed among these distances:
57 17 0.07
58 68 0.29
59 131 0.56
60 17 0.07
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.35
Consensus pattern (58 bp):
AAAAATGGAATTTTTAGAAGTTCGAGGGTAAAATATAATTTTTTAGAAGTTCAAGGGC
Found at i:26677559 original size:12 final size:12
Alignment explanation
Indices: 26677537--26677596 Score: 57
Period size: 12 Copynumber: 4.8 Consensus size: 12
26677527 CTTTTAAATG
26677537 TTATTAATATTA
1 TTATTAATATTA
* *
26677549 ATATTATTATTA
1 TTATTAATATTA
*
26677561 TTATTACTATTA
1 TTATTAATATTA
*
26677573 TTTATTTAATACTA
1 -TTA-TTAATATTA
*
26677587 TAATTAATAT
1 TTATTAATAT
26677597 GCTTTAAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
12 26 0.68
13 5 0.13
14 7 0.18
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (12 bp):
TTATTAATATTA
Found at i:26678330 original size:22 final size:21
Alignment explanation
Indices: 26678295--26678335 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
26678285 AAACTATTCA
26678295 AATTTAACTAAATTTAAAACC
1 AATTTAACTAAATTTAAAACC
*
26678316 AATTTAAACTTAATTTAAAA
1 AATTT-AACTAAATTTAAAA
26678336 TCAAAAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (21 bp):
AATTTAACTAAATTTAAAACC
Found at i:26678434 original size:32 final size:32
Alignment explanation
Indices: 26678393--26678460 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
26678383 AATATAATAT
*
26678393 AAAGTAAAGCAATGAAAAGCAGAACAATATAA
1 AAAGTAAAGCAAAGAAAAGCAGAACAATATAA
* * *
26678425 AAAGTAAAGCAAAGCAAAGCATAGCAATATAA
1 AAAGTAAAGCAAAGAAAAGCAGAACAATATAA
26678457 AAAG
1 AAAG
26678461 CACAACAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.62, C:0.10, G:0.16, T:0.12
Consensus pattern (32 bp):
AAAGTAAAGCAAAGAAAAGCAGAACAATATAA
Found at i:26678460 original size:27 final size:26
Alignment explanation
Indices: 26678430--26678667 Score: 122
Period size: 27 Copynumber: 9.5 Consensus size: 26
26678420 TATAAAAAGT
*
26678430 AAAGCAAAGCAAAGCATAGCAATATAA
1 AAAGCAAAGCAAAGCA-AACAATATAA
* *
26678457 AAAGCACAA-CAATA--TAA-AA-AGA-
1 AAAGCA-AAGCAA-AGCAAACAATATAA
26678479 AAAGCAAAGC-AA--AA-CAATATAA
1 AAAGCAAAGCAAAGCAAACAATATAA
*
26678501 AAAGCAAAGCAAGGCAAAACAATATAA
1 AAAGCAAAGCAAAGC-AAACAATATAA
*
26678528 AAAGCATAGCAAAGCAAAACAATATAA
1 AAAGCAAAGCAAAGC-AAACAATATAA
* *
26678555 AAA-TAAAGC-AA--AAACAA-A-AT
1 AAAGCAAAGCAAAGCAAACAATATAA
*
26678575 AAAGC--A-C-AA-CAAAGTAATATAA
1 AAAGCAAAGCAAAGCAAA-CAATATAA
*
26678597 AAAGCAAAGCAAAGCAAAACAGTATAA
1 AAAGCAAAGCAAAGC-AAACAATATAA
*
26678624 AAAGCAAAGCACAACAAAGCAAAGCAACATAA
1 AAAGCAAAG-----CAAAGCAAA-CAATATAA
26678656 AAAGCAAAGCAA
1 AAAGCAAAGCAA
26678668 TTTAAAAAGC
Statistics
Matches: 165, Mismatches: 18, Indels: 56
0.69 0.08 0.23
Matches are distributed among these distances:
18 3 0.02
19 4 0.02
20 10 0.06
21 7 0.04
22 29 0.18
23 3 0.02
24 3 0.02
25 4 0.02
26 8 0.05
27 64 0.39
28 6 0.04
31 3 0.02
32 21 0.13
ACGTcount: A:0.65, C:0.15, G:0.12, T:0.08
Consensus pattern (26 bp):
AAAGCAAAGCAAAGCAAACAATATAA
Found at i:26678512 original size:22 final size:22
Alignment explanation
Indices: 26678435--26678609 Score: 101
Period size: 22 Copynumber: 7.6 Consensus size: 22
26678425 AAAGTAAAGC
* *
26678435 AAAGCAAAGCATAGCAATATAA
1 AAAGCAAAGCAAAACAATATAA
* * *
26678457 AAAGCACAA-CAATATAA-AAAGA
1 AAAGCA-AAGCAAAACAATATA-A
26678479 AAAGCAAAGCAAAACAATATAA
1 AAAGCAAAGCAAAACAATATAA
26678501 AAAGCAAAGCAAGGCAAAACAATATAAAA
1 AAAGC--A--AA-GCAAAACAATAT--AA
26678530 AGCATAGCAAAGCAAAACAATATAA
1 A--A-AGCAAAGCAAAACAATATAA
* *
26678555 AAA-TAAAGCAAAAACAA-A-AT
1 AAAGCAAAGC-AAAACAATATAA
**
26678575 AAAGCACAA-CAAAGTAATATAA
1 AAAGCA-AAGCAAAACAATATAA
26678597 AAAGCAAAGCAAA
1 AAAGCAAAGCAAA
26678610 GCAAAACAGT
Statistics
Matches: 119, Mismatches: 14, Indels: 40
0.69 0.08 0.23
Matches are distributed among these distances:
20 9 0.08
21 15 0.13
22 50 0.42
23 5 0.04
24 1 0.01
25 3 0.03
26 2 0.02
27 24 0.20
28 2 0.02
29 3 0.03
30 1 0.01
31 1 0.01
32 3 0.03
ACGTcount: A:0.66, C:0.14, G:0.11, T:0.10
Consensus pattern (22 bp):
AAAGCAAAGCAAAACAATATAA
Found at i:26678518 original size:32 final size:31
Alignment explanation
Indices: 26678457--26678667 Score: 129
Period size: 32 Copynumber: 6.9 Consensus size: 31
26678447 AGCAATATAA
*
26678457 AAAGCACAACAATATAAAAAG--AA--AAGC
1 AAAGCAAAACAATATAAAAAGCAAAGCAAGC
26678484 AAAGCAAAACAATATAAAAAGCAAAGCAAG-
1 AAAGCAAAACAATATAAAAAGCAAAGCAAGC
*
26678514 ---GCAAAACAATATAAAAAGCATAGCAAAGC
1 AAAGCAAAACAATATAAAAAGCAAAGC-AAGC
* * * * **
26678543 AAAACAATATAA-A-AATAAAGCAAAAACAAAAT
1 AAAGCAAAACAATATAA-AAAGC-AAAGC-AAGC
* * ***
26678575 AAAGCACAACAA-AGTAATATAAAAAGCAAAGC
1 AAAGCAAAACAATA-TAAAAAGCAAAGCAA-GC
* *
26678607 AAAGCAAAACAGTATAAAAAGCAAAGCACAAC
1 AAAGCAAAACAATATAAAAAGCAAAGCA-AGC
* *
26678639 AAAGCAAAGCAACATAAAAAGCAAAGCAA
1 AAAGCAAAACAATATAAAAAGCAAAGCAA
26678668 TTTAAAAAGC
Statistics
Matches: 138, Mismatches: 30, Indels: 28
0.70 0.15 0.14
Matches are distributed among these distances:
27 43 0.31
28 3 0.02
29 2 0.01
30 2 0.01
31 12 0.09
32 71 0.51
33 3 0.02
34 2 0.01
ACGTcount: A:0.65, C:0.15, G:0.11, T:0.08
Consensus pattern (31 bp):
AAAGCAAAACAATATAAAAAGCAAAGCAAGC
Found at i:26678522 original size:54 final size:53
Alignment explanation
Indices: 26678409--26678667 Score: 179
Period size: 49 Copynumber: 5.0 Consensus size: 53
26678399 AAGCAATGAA
* * * ** * *
26678409 AAGCAGAACAATATAAAAAGTAAAGCAAAGCAAAGC-ATAGCAATA-TAAA--
1 AAGCAAAACAATATAAAAAGAAAAGCAAAGCAAAACAATATAAAAAGCAAAGC
*
26678458 AAGCACAACAATATAAAAAGAAAAGCAAAGCAAAACAATATAAAAAGCAAAGC
1 AAGCAAAACAATATAAAAAGAAAAGCAAAGCAAAACAATATAAAAAGCAAAGC
* * *
26678511 AAGGCAAAACAATATAAAAAGCATAGCAAAGCAAAACAATATAAAAA-TAAAGC
1 AA-GCAAAACAATATAAAAAGAAAAGCAAAGCAAAACAATATAAAAAGCAAAGC
* * **
26678564 -A--AAAACAA-A-ATAAAG--CA-C-AA-CAAAGTAATATAAAAAGCAAAGC
1 AAGCAAAACAATATAAAAAGAAAAGCAAAGCAAAACAATATAAAAAGCAAAGC
* * * *
26678607 AAAGCAAAACAGTATAAAAAGCAAAGCACAACAAAGCAAAGCAACATAAAAAGCAAAGC
1 -AAGCAAAACAATATAAAAAG--AA--A-AGCAAAGCAAAACAATATAAAAAGCAAAGC
26678666 AA
1 AA
26678668 TTTAAAAAGC
Statistics
Matches: 167, Mismatches: 21, Indels: 35
0.75 0.09 0.16
Matches are distributed among these distances:
42 14 0.08
43 7 0.04
44 1 0.01
45 2 0.01
47 11 0.07
48 2 0.01
49 45 0.27
50 6 0.04
51 3 0.02
52 1 0.01
53 7 0.04
54 41 0.25
56 1 0.01
57 1 0.01
58 4 0.02
59 21 0.13
ACGTcount: A:0.64, C:0.15, G:0.12, T:0.09
Consensus pattern (53 bp):
AAGCAAAACAATATAAAAAGAAAAGCAAAGCAAAACAATATAAAAAGCAAAGC
Found at i:26678644 original size:15 final size:16
Alignment explanation
Indices: 26678620--26678683 Score: 78
Period size: 17 Copynumber: 3.9 Consensus size: 16
26678610 GCAAAACAGT
26678620 ATAAAAAGCAAAGCAC
1 ATAAAAAGCAAAGCAC
*
26678636 A-ACAAAGCAAAGCAAC
1 ATAAAAAGCAAAGC-AC
26678652 ATAAAAAGCAAAGCA-
1 ATAAAAAGCAAAGCAC
26678667 ATTTAAAAAGCAAAGCA
1 A--TAAAAAGCAAAGCA
26678684 ACATGTTGAC
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
15 12 0.29
16 5 0.12
17 25 0.60
ACGTcount: A:0.62, C:0.17, G:0.12, T:0.08
Consensus pattern (16 bp):
ATAAAAAGCAAAGCAC
Found at i:26678648 original size:69 final size:69
Alignment explanation
Indices: 26678521--26678649 Score: 188
Period size: 69 Copynumber: 1.9 Consensus size: 69
26678511 AAGGCAAAAC
* * *
26678521 AATATAAAAAGCATAGCAAAGCAAAACAATATAAAAATAAAGCAAAAACAAAATAAAGCACAACA
1 AATATAAAAAGCAAAGCAAAGCAAAACAATATAAAAACAAAGCAAAAACAAAACAAAGCACAACA
26678586 AAGT
66 AAGT
* * *
26678590 AATATAAAAAGCAAAGCAAAGCAAAACAGTATAAAAAGCAAAGC-ACAACAAAGCAAAGCA
1 AATATAAAAAGCAAAGCAAAGCAAAACAATATAAAAA-CAAAGCAAAAACAAAACAAAGCA
26678650 ACATAAAAAG
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
69 48 0.91
70 5 0.09
ACGTcount: A:0.65, C:0.15, G:0.11, T:0.09
Consensus pattern (69 bp):
AATATAAAAAGCAAAGCAAAGCAAAACAATATAAAAACAAAGCAAAAACAAAACAAAGCACAACA
AAGT
Found at i:26684637 original size:6 final size:6
Alignment explanation
Indices: 26684626--26684684 Score: 64
Period size: 6 Copynumber: 9.8 Consensus size: 6
26684616 AACGGTACAT
* * * * *
26684626 AATAAA AATAAA AATAAC AATAAC AATAAA AATGAA AATGAA AATATA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
*
26684674 AATATA AATAA
1 AATAAA AATAA
26684685 TAATTCAATA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (6 bp):
AATAAA
Found at i:26688622 original size:149 final size:149
Alignment explanation
Indices: 26688324--26688853 Score: 483
Period size: 149 Copynumber: 3.6 Consensus size: 149
26688314 ACCGGATTTA
* ** * * * *
26688324 CCGTTGCGGCCTCAATCTTTCTTATCACATCTTCTAAGGTACAGGGTTCACCGTTGTGGCCTCAA
1 CCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCATCGTTGCGGCCTTAA
* * * * * * * * * *
26688389 CCTTTCCCATCACATCTTCTAAGGTACCGAGTTCGTCGTTGTAGCCTTAACCTTTCCCTTAATAT
66 CCTTTCCCTTCACATCTTC-ATGTTACTGGGTTCGTCATTGTGGCCTCAACCTTTCCCATAACAT
* * * *
26688454 C-TTCATGGTACCAGATTCG
130 CTTTTAAGGTACCGGGTTCG
* * * * * * *
26688473 CTGTTGTGGCCTCAATCTTTCCCATCTCATCTTTTGAGGTACCGAGTTCATCGTTGCGGCCTTAA
1 CCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCATCGTTGCGGCCTTAA
* * * *
26688538 TCTTTCCCTTCAGATTTTCATGTTACTGGGTTCGTCATTGTGGCCTCAACCTTTCCCATCACATC
66 CCTTTCCCTTCACATCTTCATGTTACTGGGTTCGTCATTGTGGCCTCAACCTTTCCCATAACATC
*
26688603 TTTTAAGGTATCGGGTTCG
131 TTTTAAGGTACCGGGTTCG
* * ** *
26688622 CCGTTGCGGCCACAACCTTTCCCATCACATCTTCTAAGGTATCGGGTTTGTCGTTACGGCCTTAA
1 CCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCATCGTTGCGGCCTTAA
* * ** * * * *
26688687 CCTTTCCCTTCATATCTTCATATTA-TAGGGTTCACCATTGCGGCCACAACCTTTCTCATTACAT
66 CCTTTCCCTTCACATCTTCATGTTACT-GGGTTCGTCATTGTGGCCTCAACCTTTCCCATAACAT
* *
26688751 TTTTTAAGGTACCGAGTTCG
130 CTTTTAAGGTACCGGGTTCG
* * * * * * * * * *
26688771 CCGTTGTGGCCTCAACCTTTCCCTTCATATC-TCTATGGTATCAGGTTCACCGTTACAGCCTCAA
1 CCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCATCGTTGCGGCCTTAA
26688835 CCTTTCCCATT-ACATCTTC
66 CCTTTCCC-TTCACATCTTC
26688854 TAAGGTATCG
Statistics
Matches: 310, Mismatches: 68, Indels: 7
0.81 0.18 0.02
Matches are distributed among these distances:
148 78 0.25
149 232 0.75
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.36
Consensus pattern (149 bp):
CCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTCATCGTTGCGGCCTTAA
CCTTTCCCTTCACATCTTCATGTTACTGGGTTCGTCATTGTGGCCTCAACCTTTCCCATAACATC
TTTTAAGGTACCGGGTTCG
Found at i:26688656 original size:248 final size:247
Alignment explanation
Indices: 26688262--26688909 Score: 714
Period size: 248 Copynumber: 2.6 Consensus size: 247
26688252 ATGTTTTCTT
* * * *
26688262 AGGTACTGAGTTCACCGTTGCGGCCTCAACTTTCCCTTCAAATTTTCATGGTACCGGATTTACCG
1 AGGTACCGAGTTCACCGTTGCGGCCTCAACTTTCCCTTCAAATTTTCATGGTACTGGGTTCACCG
* ** * *
26688327 TTGCGGCCTCAATCTTTCTTATCACATCTTCTAAGGTA-CAGGGTTCACCGTTGTGGCCTCAACC
66 TTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTATC-GGGTTCGCCGTTGCGGCCTCAACC
**
26688391 TTTCCCATCACATCTTCTAAGGTACCGAGTTCGTCGTTGTAGCCTTAACCTTTCCCTTAATATCT
130 TTTCCCATCACATCTTCTAAGGTACCGAGTTCGTCGTTACAGCCTTAACCTTTCCCTTAATATCT
* * ** * * * *
26688456 TCATGGTACCA-GATTCGCTGTTGTGGCCTCAATCTTTCCCATCT-CATCTTTTG
195 TCATAGTA-CAGGATTCACCATTGCGGCCACAACCTTTCCCAT-TACATCTTTTA
* * * * **
26688509 AGGTACCGAGTTCATCGTTGCGGCCTTAATCTTTCCCTTCAGATTTTCATGTTACTGGGTTCGTC
1 AGGTACCGAGTTCACCGTTGCGGCCTCAA-CTTTCCCTTCAAATTTTCATGGTACTGGGTTCACC
* * * *
26688574 ATTGTGGCCTCAACCTTTCCCATCACATCTTTTAAGGTATCGGGTTCGCCGTTGCGGCCACAACC
65 GTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACC
* * * * *
26688639 TTTCCCATCACATCTTCTAAGGTATCGGGTTTGTCGTTACGGCCTTAACCTTTCCCTTCATATCT
130 TTTCCCATCACATCTTCTAAGGTACCGAGTTCGTCGTTACAGCCTTAACCTTTCCCTTAATATCT
* * * * *
26688704 TCATATTATAGGGTTCACCATTGCGGCCACAACCTTTCTCATTACATTTTTTA
195 TCATAGTACAGGATTCACCATTGCGGCCACAACCTTTCCCATTACATCTTTTA
* * * * *
26688757 AGGTACCGAGTTCGCCGTTGTGGCCTCAACCTTTCCCTTCATA-TCTCTATGGTA-TCAGGTTCA
1 AGGTACCGAGTTCACCGTTGCGGCCTCAA-CTTTCCCTTCAAATTTTC-ATGGTACT-GGGTTCA
* * * * * *
26688820 CCGTTACAGCCTCAACCTTTCCCATTACATCTTCTAAGGTATCGGGTTCGTCGTTACGACCTCAA
63 CCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAA
* * *
26688885 CCTTTCCCTTCATATC-TCCAAGGTA
128 CCTTTCCCATCACATCTTCTAAGGTA
26688910 TCAGATTCAC
Statistics
Matches: 332, Mismatches: 63, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
247 40 0.12
248 291 0.88
249 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35
Consensus pattern (247 bp):
AGGTACCGAGTTCACCGTTGCGGCCTCAACTTTCCCTTCAAATTTTCATGGTACTGGGTTCACCG
TTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTATCGGGTTCGCCGTTGCGGCCTCAACCT
TTCCCATCACATCTTCTAAGGTACCGAGTTCGTCGTTACAGCCTTAACCTTTCCCTTAATATCTT
CATAGTACAGGATTCACCATTGCGGCCACAACCTTTCCCATTACATCTTTTA
Found at i:26688875 original size:50 final size:50
Alignment explanation
Indices: 26688271--26688892 Score: 401
Period size: 50 Copynumber: 12.6 Consensus size: 50
26688261 TAGGTACTGA
* * * * *
26688271 GTTCACCGTTGCGGCCTCAA-CTTTCCC-TTCAAATTTTC-ATGGTACCGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATT-ACATCTTCTAAGGTATCGG
* ** * ** *
26688319 ATTTACCGTTGCGGCCTCAATCTTTCTTATCACATCTTCTAAGGTA-CAGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCTTCTAAGGTATC-GG
* * * * *
26688369 GTTCACCGTTGTGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGA
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCTTCTAAGGTATCGG
* ** * * * * *
26688419 GTTCGTCGTTGTAGCCTTAACCTTTCCC-TTAATATCTTC-ATGGTACCAG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATT-ACATCTTCTAAGGTATCGG
* * * * * * * *
26688468 ATTCGCTGTTGTGGCCTCAATCTTTCCCATCT-CATCTTTTGAGGTACCGA
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCAT-TACATCTTCTAAGGTATCGG
** * * * * * *
26688518 GTTCATCGTTGCGGCCTTAATCTTTCCC-TTCAGATTTTC-ATGTTA-CTGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATT-ACATCTTCTAAGGTATC-GG
* * * * *
26688567 GTTCGTCATTGTGGCCTCAACCTTTCCCATCACATCTTTTAAGGTATCGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCTTCTAAGGTATCGG
* *
26688617 GTTCGCCGTTGCGGCCACAACCTTTCCCATCACATCTTCTAAGGTATCGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCTTCTAAGGTATCGG
* * * * * * *
26688667 GTTTGTCGTTACGGCCTTAACCTTTCCC-TTCATATCTTC-ATA-TTATAGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATT-ACATCTTCTA-AGGTATCGG
* * * * * * * *
26688716 GTTCACCATTGCGGCCACAACCTTTCTCATTACATTTTTTAAGGTACCGA
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCTTCTAAGGTATCGG
* * * *
26688766 GTTCGCCGTTGTGGCCTCAACCTTTCCC-TT-CATATCTCTATGGTATCAG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCT-TCTAAGGTATCGG
* * *
26688815 GTTCACCGTTACAGCCTCAACCTTTCCCATTACATCTTCTAAGGTATCGG
1 GTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCTTCTAAGGTATCGG
* * *
26688865 GTTCGTCGTTACGACCTCAACCTTTCCC
1 GTTCGCCGTTGCGGCCTCAACCTTTCCC
26688893 TTCATATCTC
Statistics
Matches: 440, Mismatches: 111, Indels: 44
0.74 0.19 0.07
Matches are distributed among these distances:
48 24 0.05
49 147 0.33
50 262 0.60
51 7 0.02
ACGTcount: A:0.18, C:0.29, G:0.17, T:0.36
Consensus pattern (50 bp):
GTTCGCCGTTGCGGCCTCAACCTTTCCCATTACATCTTCTAAGGTATCGG
Found at i:26688902 original size:99 final size:100
Alignment explanation
Indices: 26688277--26688928 Score: 413
Period size: 99 Copynumber: 6.6 Consensus size: 100
26688267 CTGAGTTCAC
* * * * * * *
26688277 CGTTGCGGCCTCAA-CTTTCCCTTCAAATTTTC-ATGGTA-CCGGATTTACCGTTGCGGCCTCAA
1 CGTTACGGCCTCAACCTTTCCCTTCATATCTTCTAAGGTATCAGG-TTCACCGTTGCGGCCACAA
* ** * **
26688339 TCTTTCTTATCACATCTTCTAAGGTA-CAGGGTTCAC
65 CCTTTCCCATTACATCTTCTAAGGTATC-GGGTTCGT
** * * * ** ** **
26688375 CGTTGTGGCCTCAACCTTTCCCATCACATCTTCTAAGGTA-CCGAGTTCGTCGTTGTAGCCTTAA
1 CGTTACGGCCTCAACCTTTCCCTTCATATCTTCTAAGGTATCAG-GTTCACCGTTGCGGCCACAA
* * * * *
26688439 CCTTTCCC-TTAATATCTTC-ATGGTACCAGATTCG-
65 CCTTTCCCATT-ACATCTTCTAAGGTATCGGGTTCGT
** * * * * * * **
26688473 CTGTTGTGGCCTCAATCTTTCCCATC-TCATCTTTTGAGGTA-CCGAGTTCATCGTTGCGGCCTT
1 C-GTTACGGCCTCAACCTTTCCCTTCAT-ATCTTCTAAGGTATCAG-GTTCACCGTTGCGGCCAC
* * * * *
26688536 AATCTTTCCC-TTCAGATTTTC-ATGTTA-CTGGGTTCGT
63 AACCTTTCCCATT-ACATCTTCTAAGGTATC-GGGTTCGT
* ** * * * * *
26688573 CATTGTGGCCTCAACCTTTCCCATCACATCTTTTAAGGTATCGGGTTCGCCGTTGCGGCCACAAC
1 CGTTACGGCCTCAACCTTTCCCTTCATATCTTCTAAGGTATCAGGTTCACCGTTGCGGCCACAAC
* *
26688638 CTTTCCCATCACATCTTCTAAGGTATCGGGTTTGT
66 CTTTCCCATTACATCTTCTAAGGTATCGGGTTCGT
* * *
26688673 CGTTACGGCCTTAACCTTTCCCTTCATATCTTC-ATA-TTAT-AGGGTTCACCATTGCGGCCACA
1 CGTTACGGCCTCAACCTTTCCCTTCATATCTTCTA-AGGTATCA-GGTTCACCGTTGCGGCCACA
* * * * * *
26688735 ACCTTTCTCATTACATTTTTTAAGGTACCGAGTTCGC
64 ACCTTTCCCATTACATCTTCTAAGGTATCGGGTTCGT
** * * * *
26688772 CGTTGTGGCCTCAACCTTTCCCTTCATATC-TCTATGGTATCAGGTTCACCGTTACAGCCTCAAC
1 CGTTACGGCCTCAACCTTTCCCTTCATATCTTCTAAGGTATCAGGTTCACCGTTGCGGCCACAAC
26688836 CTTTCCCATTACATCTTCTAAGGTATCGGGTTCGT
66 CTTTCCCATTACATCTTCTAAGGTATCGGGTTCGT
* * * * *
26688871 CGTTACGACCTCAACCTTTCCCTTCATATC-TCCAAGGTATCAGATTCACTGTCGCGGC
1 CGTTACGGCCTCAACCTTTCCCTTCATATCTTCTAAGGTATCAGGTTCACCGTTGCGGC
26688929 ATCAATCTTC
Statistics
Matches: 441, Mismatches: 94, Indels: 37
0.77 0.16 0.06
Matches are distributed among these distances:
98 17 0.04
99 345 0.78
100 77 0.17
101 2 0.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35
Consensus pattern (100 bp):
CGTTACGGCCTCAACCTTTCCCTTCATATCTTCTAAGGTATCAGGTTCACCGTTGCGGCCACAAC
CTTTCCCATTACATCTTCTAAGGTATCGGGTTCGT
Found at i:26698146 original size:14 final size:14
Alignment explanation
Indices: 26698129--26698155 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26698119 ACCAATATAT
26698129 TCAAAAAAATATTG
1 TCAAAAAAATATTG
26698143 TCAAAAAAATATT
1 TCAAAAAAATATT
26698156 TATTAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (14 bp):
TCAAAAAAATATTG
Found at i:26698381 original size:18 final size:18
Alignment explanation
Indices: 26698358--26698392 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26698348 AAGTTAAAAG
26698358 ATAAAACAAACATAATGA
1 ATAAAACAAACATAATGA
26698376 ATAAAACAAACATAATG
1 ATAAAACAAACATAATG
26698393 TTTTGGGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.66, C:0.11, G:0.06, T:0.17
Consensus pattern (18 bp):
ATAAAACAAACATAATGA
Found at i:26699174 original size:17 final size:19
Alignment explanation
Indices: 26699135--26699175 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
26699125 TTTCCTGAAC
* *
26699135 ATTTAACTCACATTTTATA
1 ATTTAAATCACATTTAATA
26699154 ATTTAAATCA-ATTTAAT-
1 ATTTAAATCACATTTAATA
26699171 ATTTA
1 ATTTA
26699176 TTTTCTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 5 0.25
18 6 0.30
19 9 0.45
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTAAATCACATTTAATA
Found at i:26699229 original size:17 final size:19
Alignment explanation
Indices: 26699193--26699235 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
26699183 TTTTTTAAAA
26699193 TAAATATAATTTAATCAAT
1 TAAATATAATTTAATCAAT
*
26699212 TAAAT-TAATTT-CTCAAT
1 TAAATATAATTTAATCAAT
*
26699229 TGAATAT
1 TAAATAT
26699236 TTTTTTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 9 0.43
18 7 0.33
19 5 0.24
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (19 bp):
TAAATATAATTTAATCAAT
Found at i:26701545 original size:14 final size:15
Alignment explanation
Indices: 26701526--26701563 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
26701516 ATTCTTAAAA
*
26701526 TTAAAAATTAAA-CT
1 TTAAAAATTAAATAT
*
26701540 TTAAAAATAAAATAT
1 TTAAAAATTAAATAT
26701555 TTAAAAATT
1 TTAAAAATT
26701564 TGTTTTTCGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (15 bp):
TTAAAAATTAAATAT
Found at i:26702287 original size:20 final size:20
Alignment explanation
Indices: 26702258--26702303 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
26702248 TATTCATTTA
* *
26702258 TTTATGATTTTATATGTATT
1 TTTATAATTTTATATATATT
*
26702278 TTTATAATTTTGTATATATT
1 TTTATAATTTTATATATATT
26702298 TTTATA
1 TTTATA
26702304 GAAAAATGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (20 bp):
TTTATAATTTTATATATATT
Found at i:26702337 original size:24 final size:23
Alignment explanation
Indices: 26702310--26702367 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
26702300 TATAGAAAAA
*
26702310 TGAAATTTTAATTTTTTTAATTTT
1 TGAAATTTTAATTGTTTTAA-TTT
26702334 TGAAAGTGTTT--TTGTTTTAATTT
1 TGAAA-T-TTTAATTGTTTTAATTT
*
26702357 TGAACTTTTAA
1 TGAAATTTTAA
26702368 GAATCAAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
21 3 0.11
22 1 0.04
23 7 0.25
24 13 0.46
25 1 0.04
26 3 0.11
ACGTcount: A:0.28, C:0.02, G:0.10, T:0.60
Consensus pattern (23 bp):
TGAAATTTTAATTGTTTTAATTT
Found at i:26708278 original size:41 final size:39
Alignment explanation
Indices: 26708215--26708551 Score: 277
Period size: 41 Copynumber: 8.3 Consensus size: 39
26708205 GGCCCGACCT
* * * *
26708215 TTTAGTGGCGCTTTAGGGAAAGCGCCGCTAATGATCATACC
1 TTTAGCGGCGCTTGA-GTAAAGCGCCGCTAATGA-CCTACC
* * *
26708256 TTTAGCGGCGCTCGAGTTAAAGCGCCACTAATTACCTGACC
1 TTTAGCGGCGCTTGAG-TAAAGCGCCGCTAATGACCT-ACC
* *** *
26708297 TTTAGCGGTGCTTTCCCTAAAGCGCCGCTAATTACCCTACC
1 TTTAGCGGCGC-TTGAGTAAAGCGCCGCTAATGA-CCTACC
* *
26708338 TTTAGCGGCGCATTAGAG-AAAGCGCCGCTAATGACATGAAC
1 TTTAGCGGCGC-TT-GAGTAAAGCGCCGCTAATGACCT-ACC
*
26708379 TTTAGCGGCGCTTGTGATAAAGCGCCGCTAATGACCT-CC
1 TTTAGCGGCGCTTGAG-TAAAGCGCCGCTAATGACCTACC
*
26708418 TTTAGCGGCGCTTGTGGGTAAAGCGCCGCTAATGACCTAACC
1 TTTAGCGGCGC-T-TGAGTAAAGCGCCGCTAATGACCT-ACC
** * *
26708460 TTTAGCGGCGCTTTTGTTAAGCGCCGCTAATG-CTTTACC
1 TTTAGCGGCGCTTGAGTAAAGCGCCGCTAATGAC-CTACC
* * * *
26708499 TTTTGCGGCGCATTAAGAAAAGCGCCGCTAATG-CTTTACC
1 TTTAGCGGCGC-TTGAGTAAAGCGCCGCTAATGAC-CTACC
*
26708539 TTTTGCGGCGCTT
1 TTTAGCGGCGCTT
26708552 TGTTTCCAAA
Statistics
Matches: 248, Mismatches: 34, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
39 30 0.12
40 81 0.33
41 120 0.48
42 17 0.07
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
TTTAGCGGCGCTTGAGTAAAGCGCCGCTAATGACCTACC
Found at i:26717636 original size:16 final size:16
Alignment explanation
Indices: 26717615--26717646 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
26717605 CATGGGACAA
26717615 AATTGAGTATCCACAT
1 AATTGAGTATCCACAT
26717631 AATTGAGTATCCACAT
1 AATTGAGTATCCACAT
26717647 TGTGTTGGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (16 bp):
AATTGAGTATCCACAT
Found at i:26717991 original size:19 final size:18
Alignment explanation
Indices: 26717963--26718009 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
26717953 AAAAAAATAT
26717963 TTTTTTAAATTAATTTATA
1 TTTTTTAAATT-ATTTATA
* *
26717982 -TTTTTAAAATATTTTTA
1 TTTTTTAAATTATTTATA
26717999 TTTTTTAAATT
1 TTTTTTAAATT
26718010 TATGTGCACT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTTTAAATTATTTATA
Found at i:26717995 original size:17 final size:18
Alignment explanation
Indices: 26717964--26718008 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
26717954 AAAAAATATT
*
26717964 TTTTTAAATTAATTTATA
1 TTTTTAAAATAATTTATA
*
26717982 TTTTTAAAAT-ATTTTTA
1 TTTTTAAAATAATTTATA
*
26717999 TTTTTTAAAT
1 TTTTTAAAAT
26718009 TTATGTGCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTTAAAATAATTTATA
Found at i:26720320 original size:20 final size:21
Alignment explanation
Indices: 26720295--26720334 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26720285 TAATTGATGT
*
26720295 TAATAAA-ATTTTTATAATAA
1 TAATAAATATTTTAATAATAA
26720315 TAATAAATATTTTAATAATA
1 TAATAAATATTTTAATAATA
26720335 TTATTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TAATAAATATTTTAATAATAA
Found at i:26721490 original size:30 final size:29
Alignment explanation
Indices: 26721442--26721698 Score: 179
Period size: 29 Copynumber: 8.7 Consensus size: 29
26721432 TTGACCCCTG
*
26721442 AACTTCTCTAAAAA-TACATTTTTGATCCCGA
1 AACTT-TC-AAAAATTACATTTTTGA-CCCAA
**
26721473 AACTTTTGAAAATTACA-TTTTGACCTCAA
1 AACTTTCAAAAATTACATTTTTGACC-CAA
* *
26721502 AACTCT-AAAAATTACATTTTTAACCTCAA
1 AACTTTCAAAAATTACATTTTTGACC-CAA
* *
26721531 AACTTCCAAAAATTACATTTTT-ACCCCTA
1 AACTTTCAAAAATTACATTTTTGA-CCCAA
* *
26721560 AA-TTTCCAAATATTCCATTTTTGACCCTAA
1 AACTTT-CAAAAATTACATTTTTGACCC-AA
* *
26721590 AACTTTCAAAAATTACATTTTTGCCCCCA
1 AACTTTCAAAAATTACATTTTTGACCCAA
* **
26721619 AAC-TTCAAAAAATTTCATTTTTTGACCCCG
1 AACTTTC-AAAAATTACA-TTTTTGACCCAA
* * *
26721649 AAC-TTCCAAAATTCCATTTTTAACCCTAA
1 AACTTTCAAAAATTACATTTTTGACCC-AA
* *
26721678 AAC-TCCCAAAATTACCATTTT
1 AACTTTCAAAAATTA-CATTTT
26721699 ACCCTCGGAT
Statistics
Matches: 186, Mismatches: 27, Indels: 27
0.77 0.11 0.11
Matches are distributed among these distances:
28 25 0.13
29 87 0.47
30 66 0.35
31 8 0.04
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.36
Consensus pattern (29 bp):
AACTTTCAAAAATTACATTTTTGACCCAA
Found at i:26721593 original size:59 final size:59
Alignment explanation
Indices: 26721451--26721698 Score: 193
Period size: 59 Copynumber: 4.2 Consensus size: 59
26721441 GAACTTCTCT
* *** * * * *
26721451 AAAAA-TACATTTTTGATCCC-GAAACTTTTGAAAATTACATTTTGACCTC-AAAACTCT
1 AAAAATTACATTTTTGA-CCCTAAAACTTCCAAAAATTACATTTTTACCCCTAAAATTCA
* * *
26721508 AAAAATTACATTTTT-AACCTCAAAACTTCCAAAAATTACATTTTTACCCCTAAATTTCC
1 AAAAATTACATTTTTGACCCT-AAAACTTCCAAAAATTACATTTTTACCCCTAAAATTCA
* * * * * *
26721567 AAATATTCCATTTTTGACCCTAAAACTTTCAAAAATTACATTTTTGCCCCCAAACTTCA
1 AAAAATTACATTTTTGACCCTAAAACTTCCAAAAATTACATTTTTACCCCTAAAATTCA
* ** * * * *
26721626 AAAAATTTCATTTTTTGACCC-CGAACTTCC-AAAATTCCATTTTTAACCCTAAAACTCC
1 AAAAATTACA-TTTTTGACCCTAAAACTTCCAAAAATTACATTTTTACCCCTAAAATTCA
*
26721684 CAAAATTACCATTTT
1 AAAAATTA-CATTTT
26721699 ACCCTCGGAT
Statistics
Matches: 152, Mismatches: 32, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
56 2 0.01
57 6 0.04
58 63 0.41
59 67 0.44
60 14 0.09
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.35
Consensus pattern (59 bp):
AAAAATTACATTTTTGACCCTAAAACTTCCAAAAATTACATTTTTACCCCTAAAATTCA
Found at i:26721832 original size:28 final size:28
Alignment explanation
Indices: 26721800--26721861 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
26721790 CAAATTTTTC
26721800 CCAAAATTACCATTTTGCCCGCGAA-AGT
1 CCAAAATTACCATTTTGCCCGCGAACA-T
*
26721828 CCAAAATTACCATTTTGCCCTCGAACAT
1 CCAAAATTACCATTTTGCCCGCGAACAT
26721856 CCAAAA
1 CCAAAA
26721862 AGTCTCGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 31 0.97
29 1 0.03
ACGTcount: A:0.35, C:0.31, G:0.10, T:0.24
Consensus pattern (28 bp):
CCAAAATTACCATTTTGCCCGCGAACAT
Found at i:26722008 original size:146 final size:146
Alignment explanation
Indices: 26721683--26722018 Score: 390
Period size: 146 Copynumber: 2.3 Consensus size: 146
26721673 CCTAAAACTC
* * * * ** * * * * *
26721683 CCAAAATTACCATTTTACCCTCGGATGTCCAAAAA-TCCCATTTTTGATTTTGATTTTTCTAAAA
1 CCAAAATTACCACTTTGCCCCCGAACATCCAAAAAGTCTCATTTTTTATCTCGATTTTTCAAAAA
* * *** * *
26721747 TTATCGTTTTACCCTCGATTGTTTAAAATGTCATTTTTAACCCCAAATTTTTCCCAAAATTACCA
66 TTACCGTTTTACCCCCGAACATTTAAAATGTCATTTCTAACCCCAAATTTTTCACAAAATTACCA
26721812 TTTTGCCCGCGAAAGT
131 TTTTGCCCGCGAAAGT
* * *
26721828 CCAAAATTACCATTTTGCCCTCGAACATCCAAAAAGTCTCGTTTTTTATCTCGATTCTTTCAAAA
1 CCAAAATTACCACTTTGCCCCCGAACATCCAAAAAGTCTCATTTTTTATCTCGATT-TTTCAAAA
26721893 ATTACCGTTTTACCCCCGAACATTTAAAATGTCATTTCTAACCCCAAA-TTTTCACAAAATTACC
65 ATTACCGTTTTACCCCCGAACATTTAAAATGTCATTTCTAACCCCAAATTTTTCACAAAATTACC
**
26721957 ATTTTGCCCTTGAAAGT
130 ATTTTGCCCGCGAAAGT
* ** *
26721974 CTAAAATTACCACTTT-CCTCCCGAGTATCTAAAAAGTCTCATTTT
1 CCAAAATTACCACTTTGCC-CCCGAACATCCAAAAAGTCTCATTTT
26722019 CAACCCCGAT
Statistics
Matches: 162, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
145 33 0.20
146 80 0.49
147 49 0.30
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (146 bp):
CCAAAATTACCACTTTGCCCCCGAACATCCAAAAAGTCTCATTTTTTATCTCGATTTTTCAAAAA
TTACCGTTTTACCCCCGAACATTTAAAATGTCATTTCTAACCCCAAATTTTTCACAAAATTACCA
TTTTGCCCGCGAAAGT
Found at i:26729362 original size:25 final size:25
Alignment explanation
Indices: 26729333--26729382 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
26729323 ACACAAATTT
26729333 ACCATTTTTGAATTTTGTATACATA
1 ACCATTTTTGAATTTTGTATACATA
26729358 ACCATTTTTGAATTTTGTATACATA
1 ACCATTTTTGAATTTTGTATACATA
26729383 CACTCATACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (25 bp):
ACCATTTTTGAATTTTGTATACATA
Found at i:26732432 original size:23 final size:23
Alignment explanation
Indices: 26732404--26732453 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
26732394 CGCCCATCCT
26732404 TGCTGACTAGACCTTCTAGAAGC
1 TGCTGACTAGACCTTCTAGAAGC
* * * *
26732427 TGCTGATTGGATCTTTTAGAAGC
1 TGCTGACTAGACCTTCTAGAAGC
26732450 TGCT
1 TGCT
26732454 AACAGGATGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (23 bp):
TGCTGACTAGACCTTCTAGAAGC
Done.