Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 79 of 171
Found at i:26741405 original size:18 final size:19
Alignment explanation
Indices: 26741384--26741421 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
26741374 TTTAGTATTG
26741384 GTATAAGTT-AGAAATTTT
1 GTATAAGTTAAGAAATTTT
*
26741402 GTATAATTTAAGAAATTTT
1 GTATAAGTTAAGAAATTTT
26741421 G
1 G
26741422 GAATAAGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (19 bp):
GTATAAGTTAAGAAATTTT
Found at i:26743021 original size:24 final size:25
Alignment explanation
Indices: 26742973--26743024 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
26742963 ATATTAAATT
* *
26742973 AATAATATAAATATTCTTTCTAAAA
1 AATAATAAAAATATTCTTTCAAAAA
26742998 AATAATAAAAATATT-TTTCAAAAA
1 AATAATAAAAATATTCTTTCAAAAA
26743022 AAT
1 AAT
26743025 TTAAGCTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.37
Consensus pattern (25 bp):
AATAATAAAAATATTCTTTCAAAAA
Found at i:26744455 original size:23 final size:23
Alignment explanation
Indices: 26744423--26744499 Score: 93
Period size: 23 Copynumber: 3.4 Consensus size: 23
26744413 ACCAGTTATT
* *
26744423 ATTAT-TTTGTGACTCTCCTGCC
1 ATTATGTTTGTAACTCTCTTGCC
* * *
26744445 ATTATGTTTGTAATTCTTTTGTC
1 ATTATGTTTGTAACTCTCTTGCC
26744468 ATTATGTTTGTAACTCTCTTGCC
1 ATTATGTTTGTAACTCTCTTGCC
*
26744491 ATAATGTTT
1 ATTATGTTT
26744500 TGTTTTAAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
22 5 0.11
23 40 0.89
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (23 bp):
ATTATGTTTGTAACTCTCTTGCC
Found at i:26751713 original size:17 final size:15
Alignment explanation
Indices: 26751678--26751721 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 15
26751668 TGTTATTTTC
*
26751678 TTATTTTTTTTATTT
1 TTATTTTTTTTATTG
26751693 TTATTTTTTTTAAATTG
1 TTATTTTTTTT--ATTG
26751710 TTATTTTCTTTT
1 TTATTTT-TTTT
26751722 GACTAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 11 0.44
17 10 0.40
18 4 0.16
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (15 bp):
TTATTTTTTTTATTG
Found at i:26751939 original size:5 final size:6
Alignment explanation
Indices: 26751905--26751944 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
26751895 CGTCTGATTA
26751905 ATTTGCC ATTTCC ATTTCC ATTTCC ATTT-C ATTTCC -TTTC
1 ATTT-CC ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTTC
26751945 ATAAATTTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 9 0.28
6 19 0.59
7 4 0.12
ACGTcount: A:0.15, C:0.30, G:0.03, T:0.53
Consensus pattern (6 bp):
ATTTCC
Found at i:26753252 original size:29 final size:28
Alignment explanation
Indices: 26753210--26753292 Score: 103
Period size: 29 Copynumber: 2.9 Consensus size: 28
26753200 GGGACAAGAC
*
26753210 AACCACTTGGAAATGTGATGGTGTCCTAG
1 AACCACTTGGAAATGTGA-GGTGTCCTAA
*
26753239 AACCACTTGGAAATGTGGGGGTGTCCTAA
1 AACCACTTGGAAATGT-GAGGTGTCCTAA
* *
26753268 AACTACTTGAAAATGTAGAGGTGTC
1 AACCACTTGGAAATGT-GAGGTGTC
26753293 TTGTTAACGT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 46 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (28 bp):
AACCACTTGGAAATGTGAGGTGTCCTAA
Found at i:26754860 original size:19 final size:19
Alignment explanation
Indices: 26754836--26754888 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
26754826 TAAAGTATAC
26754836 TTATTATTTATTTTTAAAT
1 TTATTATTTATTTTTAAAT
**
26754855 TTATTA-TTAAATTTAAAT
1 TTATTATTTATTTTTAAAT
*
26754873 TATATT-TATATTTTTA
1 T-TATTATTTATTTTTA
26754889 TATACTATCT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATTATTTATTTTTAAAT
Found at i:26755234 original size:24 final size:26
Alignment explanation
Indices: 26755183--26755234 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 26
26755173 CATGGGTATA
*
26755183 AAAAATTCTAATTAAATAATTATTTT
1 AAAAATTCTAATTAAATAATTATATT
* *
26755209 AAAAATTGTAA-T-AATATTTATATT
1 AAAAATTCTAATTAAATAATTATATT
26755233 AA
1 AA
26755235 TATAATTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 12 0.52
25 1 0.04
26 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
AAAAATTCTAATTAAATAATTATATT
Found at i:26763407 original size:19 final size:19
Alignment explanation
Indices: 26763385--26763425 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
26763375 TCTACTGGTC
26763385 TAAA-AAATTTATACTTTTT
1 TAAATAAATTTATA-TTTTT
*
26763404 TAAATTAATTTATATTTTT
1 TAAATAAATTTATATTTTT
26763423 TAA
1 TAA
26763426 TTTATATCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TAAATAAATTTATATTTTT
Found at i:26766432 original size:22 final size:20
Alignment explanation
Indices: 26766406--26766457 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 20
26766396 TTAAATTATT
*
26766406 AATATAAATATTCTTTCTAAAA
1 AATATAAATATT-TTT-AAAAA
26766428 AATATGAAAATATTTTTAAAAA
1 AATAT--AAATATTTTTAAAAA
*
26766450 AATTTAAA
1 AATATAAA
26766458 AATAATTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 3 0.12
22 13 0.50
23 3 0.12
24 7 0.27
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (20 bp):
AATATAAATATTTTTAAAAA
Found at i:26771993 original size:2 final size:2
Alignment explanation
Indices: 26771988--26772015 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26771978 ACACACACAC
26771988 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26772016 TTTAAGGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26772126 original size:3 final size:3
Alignment explanation
Indices: 26772118--26772142 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
26772108 ACACAAAAAG
26772118 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
26772143 CATAGTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26782408 original size:6 final size:6
Alignment explanation
Indices: 26782380--26782431 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
26782370 ACCAAACTAT
* * **
26782380 TTTAAA TTT-AT TTTAAT TTTAAA TTTAAA TTTGGA TTT-AA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
26782426 TTTAAA
1 TTTAAA
26782432 ATTATTATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
5 8 0.21
6 31 0.79
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:26782409 original size:23 final size:22
Alignment explanation
Indices: 26782380--26782446 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 22
26782370 ACCAAACTAT
26782380 TTTAAATTTATTTTAATTTTAAA
1 TTTAAATTTATTTTAA-TTTAAA
26782403 TTTAAATTTGGA-TTTAATTTAAA
1 TTTAAATTT--ATTTTAATTTAAA
* *
26782426 TTTAAAATTATTATAAATTTA
1 TTTAAATTTATT-TTAATTTA
26782447 CTAAAATTCC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
21 1 0.03
22 1 0.03
23 30 0.79
24 5 0.13
25 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (22 bp):
TTTAAATTTATTTTAATTTAAA
Found at i:26784504 original size:30 final size:29
Alignment explanation
Indices: 26784466--26784647 Score: 170
Period size: 30 Copynumber: 6.1 Consensus size: 29
26784456 CTCTATAGGT
** *
26784466 CCCTAAACTTCTCCAAAATTATATTTTGA
1 CCCTAAACTTCTTAAAAATTATATTTTAA
* * *
26784495 CCTTAAAACTT-TATAAAAATTACATTTTGA
1 CCCT-AAACTTCT-TAAAAATTATATTTTAA
26784525 CCCTAAACTTCTCT-AAAATTATATTTTAA
1 CCCTAAACTTCT-TAAAAATTATATTTTAA
* *
26784554 CCCTAAAACTTTTTAAAAATTACATTTTAA
1 CCCT-AAACTTCTTAAAAATTATATTTTAA
*
26784584 CCCCTAAACTTCTTTAAAATTATATTTTAA
1 -CCCTAAACTTCTTAAAAATTATATTTTAA
* * * * *
26784614 CCCCAAAATTTTTTGAAAATTACATTTTAA
1 -CCCTAAACTTCTTAAAAATTATATTTTAA
26784644 CCCT
1 CCCT
26784648 CAAGTTTGAC
Statistics
Matches: 128, Mismatches: 19, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
29 31 0.24
30 93 0.73
31 4 0.03
ACGTcount: A:0.38, C:0.20, G:0.02, T:0.40
Consensus pattern (29 bp):
CCCTAAACTTCTTAAAAATTATATTTTAA
Found at i:26784561 original size:59 final size:59
Alignment explanation
Indices: 26784466--26784647 Score: 274
Period size: 59 Copynumber: 3.1 Consensus size: 59
26784456 CTCTATAGGT
* * * * *
26784466 CCCTAAACTTCTCCAAAATTATATTTTGACCTTAAAACTTTATAAAAATTACATTTTGA
1 CCCTAAACTTCTCTAAAATTATATTTTAACCCTAAAACTTTTTAAAAATTACATTTTAA
26784525 CCCTAAACTTCTCTAAAATTATATTTTAACCCTAAAACTTTTTAAAAATTACATTTTAA
1 CCCTAAACTTCTCTAAAATTATATTTTAACCCTAAAACTTTTTAAAAATTACATTTTAA
* * * *
26784584 CCCCTAAACTTCTTTAAAATTATATTTTAACCCCAAAATTTTTTGAAAATTACATTTTAA
1 -CCCTAAACTTCTCTAAAATTATATTTTAACCCTAAAACTTTTTAAAAATTACATTTTAA
26784644 CCCT
1 CCCT
26784648 CAAGTTTGAC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
59 58 0.51
60 55 0.49
ACGTcount: A:0.38, C:0.20, G:0.02, T:0.40
Consensus pattern (59 bp):
CCCTAAACTTCTCTAAAATTATATTTTAACCCTAAAACTTTTTAAAAATTACATTTTAA
Found at i:26784610 original size:60 final size:60
Alignment explanation
Indices: 26784466--26784646 Score: 274
Period size: 60 Copynumber: 3.0 Consensus size: 60
26784456 CTCTATAGGT
* * * * *
26784466 CCCTAAACTTCTCCAAAATTATATTTTGACCTTAAAACTTTATAAAAATTACATTTTGA-
1 CCCTAAACTTCTCTAAAATTATATTTTAACCCTAAAACTTTTTAAAAATTACATTTTAAC
26784525 CCCTAAACTTCTCTAAAATTATATTTTAACCCTAAAACTTTTTAAAAATTACATTTTAAC
1 CCCTAAACTTCTCTAAAATTATATTTTAACCCTAAAACTTTTTAAAAATTACATTTTAAC
* * * *
26784585 CCCTAAACTTCTTTAAAATTATATTTTAACCCCAAAATTTTTTGAAAATTACATTTTAAC
1 CCCTAAACTTCTCTAAAATTATATTTTAACCCTAAAACTTTTTAAAAATTACATTTTAAC
26784645 CC
1 CC
26784647 TCAAGTTTGA
Statistics
Matches: 112, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
59 54 0.48
60 58 0.52
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.40
Consensus pattern (60 bp):
CCCTAAACTTCTCTAAAATTATATTTTAACCCTAAAACTTTTTAAAAATTACATTTTAAC
Found at i:26784668 original size:29 final size:28
Alignment explanation
Indices: 26784629--26784932 Score: 196
Period size: 29 Copynumber: 10.5 Consensus size: 28
26784619 AAATTTTTTG
* *
26784629 AAAATTACATTTTAACCCTCAAGTTTGA-C
1 AAAATTCCATTTT-ACCCTCAA-TTTCACC
* *
26784658 AAAATTCCATTTTGCCCTCGATTTCACC
1 AAAATTCCATTTTACCCTCAATTTCACC
* *
26784686 AAAATTACCATTTTACCCTAAACTTT--CT
1 AAAATT-CCATTTTACCCTCAA-TTTCACC
*
26784714 AAAATTCCATTTTTAGCCTCCAATTTCACC
1 AAAATTCCA-TTTTACCCT-CAATTTCACC
* *
26784744 AAAATTCCCATTTTACCCCCGAACTTT--CT
1 AAAATT-CCATTTTACCCTC-AA-TTTCACC
*
26784773 AAAATTCCATTTTTCACCCTCGATTTCACC
1 AAAATTCCA-TTTT-ACCCTCAATTTCACC
*
26784803 AAAATTACCATTTTACCCACGAACTTT--CC
1 AAAATT-CCATTTTACCCTC-AA-TTTCACC
* * *
26784832 AAAATTCTATTTTTAACCC-CGATTTTACC
1 AAAATTCCA-TTTT-ACCCTCAATTTCACC
26784861 AAAAATTACCATTTTACCC-CGAATTTC-CC
1 -AAAATT-CCATTTTACCCTC-AATTTCACC
* * *
26784890 AAAATTCCATTTTTCACTCTAATTTCATC
1 AAAATTCCATTTTACCCTC-AATTTCACC
26784919 AAAATTACCATTTT
1 AAAATT-CCATTTT
26784933 GCCCCCGAGT
Statistics
Matches: 220, Mismatches: 28, Indels: 53
0.73 0.09 0.18
Matches are distributed among these distances:
27 19 0.09
28 53 0.24
29 73 0.33
30 61 0.28
31 14 0.06
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (28 bp):
AAAATTCCATTTTACCCTCAATTTCACC
Found at i:26784799 original size:59 final size:58
Alignment explanation
Indices: 26784657--26784940 Score: 337
Period size: 59 Copynumber: 4.9 Consensus size: 58
26784647 TCAAGTTTGA
* **
26784657 CAAAATTCCA-TTTTGCCCTCGATTTCACCAAAATTACCATTTTA-CCCTAAACTTTC
1 CAAAATTCCATTTTTACCCTCGATTTCACCAAAATTACCATTTTACCCCCGAACTTTC
* * * *
26784713 TAAAATTCCATTTTTAGCCTCCAATTTCACCAAAATTCCCATTTTACCCCCGAACTTTC
1 CAAAATTCCATTTTTACCCT-CGATTTCACCAAAATTACCATTTTACCCCCGAACTTTC
* *
26784772 TAAAATTCCATTTTTCACCCTCGATTTCACCAAAATTACCATTTTACCCACGAACTTTC
1 CAAAATTCCATTTTT-ACCCTCGATTTCACCAAAATTACCATTTTACCCCCGAACTTTC
* *
26784831 CAAAATTCTATTTTTAACCC-CGATTTTACCAAAAATTACCATTTTA-CCCCGAA-TTTCC
1 CAAAATTCCATTTTT-ACCCTCGATTTCACC-AAAATTACCATTTTACCCCCGAACTTT-C
* * * *
26784889 CAAAATTCCATTTTT-CACTCTAATTTCATCAAAATTACCATTTTGCCCCCGA
1 CAAAATTCCATTTTTACCCTC-GATTTCACCAAAATTACCATTTTACCCCCGA
26784941 GTATCTAAAA
Statistics
Matches: 197, Mismatches: 22, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
56 11 0.06
57 25 0.13
58 65 0.33
59 92 0.47
60 4 0.02
ACGTcount: A:0.31, C:0.30, G:0.04, T:0.36
Consensus pattern (58 bp):
CAAAATTCCATTTTTACCCTCGATTTCACCAAAATTACCATTTTACCCCCGAACTTTC
Found at i:26800058 original size:91 final size:92
Alignment explanation
Indices: 26799744--26800063 Score: 525
Period size: 92 Copynumber: 3.5 Consensus size: 92
26799734 TCAAAAATAG
26799744 CAAACCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAAACGTCAATTCTTATC
1 CAAACCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTC-AAACGTCAATTCTTATC
26799809 CTCTTGAAGTTATAGTAAAGTTGGATAA
65 CTCTTGAAGTTATAGTAAAGTTGGATAA
** * *
26799837 TTAACCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGGTGAAGCTTCAAACGTCAATTCTTATCC
1 CAAACCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCC
* *
26799902 TCTTAAAGTTATAGTAAAGCTGGATAA
66 TCTTGAAGTTATAGTAAAGTTGGATAA
* * *
26799929 CGAACCTTTATCTCTCTGAAGTTATAGTAAGAGAAAGATGAAGCTTCAGACGTCAATTCTTATCC
1 CAAACCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCC
26799994 TCTTGAAGTT-TAGTAAAGTTGGATAA
66 TCTTGAAGTTATAGTAAAGTTGGATAA
* *
26800020 CAAACCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATAAAGC
1 CAAACCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGC
26800064 CTCGACATCA
Statistics
Matches: 210, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
91 55 0.26
92 112 0.53
93 43 0.20
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (92 bp):
CAAACCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCC
TCTTGAAGTTATAGTAAAGTTGGATAA
Found at i:26800330 original size:11 final size:11
Alignment explanation
Indices: 26800316--26800395 Score: 83
Period size: 11 Copynumber: 7.1 Consensus size: 11
26800306 ACCAAACCAT
*
26800316 TTTAAATTTAT
1 TTTAAATTTAA
26800327 TTTAAATTTAAA
1 TTTAAATTT-AA
26800339 TTTAAATTTAA
1 TTTAAATTTAA
*
26800350 TTTAAATTTGGA
1 TTTAAATTT-AA
*
26800362 TTT-GATTTAAA
1 TTTAAATTT-AA
26800373 TTTAAATTT-A
1 TTTAAATTTAA
26800383 TTATAAATTTAA
1 TT-TAAATTTAA
26800395 T
1 T
26800396 AAAATTCCAA
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
10 3 0.05
11 35 0.60
12 20 0.34
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:26800336 original size:6 final size:6
Alignment explanation
Indices: 26800316--26800394 Score: 78
Period size: 6 Copynumber: 13.8 Consensus size: 6
26800306 ACCAAACCAT
* **
26800316 TTTAAA TTT-AT TTTAAA TTTAAA TTTAAA TTT-AA TTTAAA TTTGGA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
26800362 TTT-GA TTTAAA TTTAAA TTT--A TTATAAA TTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA TTTAA
26800395 TAAAATTCCA
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
4 3 0.05
5 15 0.24
6 41 0.66
7 3 0.05
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:26800338 original size:17 final size:18
Alignment explanation
Indices: 26800316--26800394 Score: 78
Period size: 17 Copynumber: 4.6 Consensus size: 18
26800306 ACCAAACCAT
*
26800316 TTTAAATTT-ATTTTAAA
1 TTTAAATTTAAATTTAAA
26800333 TTTAAATTTAAATTT-AA
1 TTTAAATTTAAATTTAAA
** *
26800350 TTTAAATTTGGATTT-GA
1 TTTAAATTTAAATTTAAA
26800367 TTTAAATTTAAATTT--A
1 TTTAAATTTAAATTTAAA
26800383 TTATAAATTTAA
1 TT-TAAATTTAA
26800395 TAAAATTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
16 3 0.06
17 47 0.87
18 4 0.07
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (18 bp):
TTTAAATTTAAATTTAAA
Found at i:26800364 original size:23 final size:21
Alignment explanation
Indices: 26800316--26800395 Score: 81
Period size: 23 Copynumber: 3.6 Consensus size: 21
26800306 ACCAAACCAT
*
26800316 TTTAAATTTATTTTAAATTTAAA
1 TTTAAATTTAATTTAAATTT--A
26800339 TTTAAATTTAATTTAAATTTGGA
1 TTTAAATTTAATTTAAATTT--A
*
26800362 TTT-GATTTAAATTTAAATTTA
1 TTTAAATTT-AATTTAAATTTA
26800383 TTATAAATTTAAT
1 TT-TAAATTTAAT
26800396 AAAATTCCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
21 3 0.06
22 8 0.16
23 38 0.78
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (21 bp):
TTTAAATTTAATTTAAATTTA
Found at i:26802598 original size:90 final size:91
Alignment explanation
Indices: 26802430--26802637 Score: 225
Period size: 90 Copynumber: 2.3 Consensus size: 91
26802420 GTCTATAGGT
* *
26802430 CCCCA-AACTTTTCCAAAATTATA-TTTTAACCTTAAAACTTTCTAAAAATTACATTTTAACCCC
1 CCCCACAACTTTTACAAAATTATATTTTTAACCCTAAAACTTTCTAAAAATTACATTTTAACCCC
*
26802493 CAAACTTCTCTAAAATTATATTTTAA
66 CAAACTTCTCTAAAATTACATTTTAA
* *
26802519 CCCCACAACTTTCTA-AAAATTATATTTTTACCCCT-AAACTTCTCT-AAAATTATATTTTAACC
1 CCCCACAACTTT-TACAAAATTATATTTTTAACCCTAAAACTT-TCTAAAAATTACATTTTAACC
* * *
26802581 CCACATA-TT-TTTGAAAATTACATTTTGA
64 CC-CAAACTTCTCT-AAAATTACATTTTAA
* *
26802609 CCCCCCAAGTTTTACAAAATT-TCATTTTT
1 CCCCACAACTTTTACAAAATTAT-ATTTTT
26802638 TGCCCCGATT
Statistics
Matches: 101, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
89 10 0.10
90 76 0.75
91 15 0.15
ACGTcount: A:0.36, C:0.23, G:0.01, T:0.39
Consensus pattern (91 bp):
CCCCACAACTTTTACAAAATTATATTTTTAACCCTAAAACTTTCTAAAAATTACATTTTAACCCC
CAAACTTCTCTAAAATTACATTTTAA
Found at i:26802606 original size:30 final size:30
Alignment explanation
Indices: 26802430--26802585 Score: 178
Period size: 30 Copynumber: 5.2 Consensus size: 30
26802420 GTCTATAGGT
* *
26802430 CCCCA-AACTTTTCCAAAATTATATTTTAA
1 CCCCACAACTTCTCTAAAATTATATTTTAA
** * *
26802459 CCTTAAAACTT-TCTAAAAATTACATTTTAA
1 CCCCACAACTTCTCT-AAAATTATATTTTAA
26802489 CCCC-CAAACTTCTCTAAAATTATATTTTAA
1 CCCCAC-AACTTCTCTAAAATTATATTTTAA
*
26802519 CCCCACAACTT-TCTAAAAATTATATTTTTA
1 CCCCACAACTTCTCT-AAAATTATATTTTAA
26802549 CCCCTA-AACTTCTCTAAAATTATATTTTAA
1 CCCC-ACAACTTCTCTAAAATTATATTTTAA
26802579 CCCCACA
1 CCCCACA
26802586 TATTTTTGAA
Statistics
Matches: 108, Mismatches: 10, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
29 9 0.08
30 91 0.84
31 8 0.07
ACGTcount: A:0.38, C:0.25, G:0.00, T:0.37
Consensus pattern (30 bp):
CCCCACAACTTCTCTAAAATTATATTTTAA
Found at i:26802628 original size:30 final size:29
Alignment explanation
Indices: 26802430--26802636 Score: 150
Period size: 30 Copynumber: 6.9 Consensus size: 29
26802420 GTCTATAGGT
*
26802430 CCCCA-AACTTTTCCAAAATTATATTTTAA
1 CCCCACAACTTTT-CAAAATTACATTTTAA
** * *
26802459 CCTTAAAACTTTCTAAAAATTACATTTTAA
1 CCCCACAACTTT-TCAAAATTACATTTTAA
* *
26802489 CCCC-CAAACTTCTCTAAAATTATATTTTAA
1 CCCCAC-AACTTTTC-AAAATTACATTTTAA
* * *
26802519 CCCCACAACTTTCTAAAAATTATATTTTTA
1 CCCCACAACTTT-TCAAAATTACATTTTAA
* *
26802549 CCCCTA-AACTTCTCTAAAATTATATTTTAA
1 CCCC-ACAACTTTTC-AAAATTACATTTTAA
* * *
26802579 CCCCACATATTTTTGAAAATTACATTTTGA
1 CCCCACA-ACTTTTCAAAATTACATTTTAA
* * *
26802609 CCCCCCAAGTTTTACAAAATTTCATTTT
1 CCCCACAACTTTT-CAAAATTACATTTT
26802637 TTGCCCCGAT
Statistics
Matches: 142, Mismatches: 25, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
29 11 0.08
30 123 0.87
31 8 0.06
ACGTcount: A:0.36, C:0.23, G:0.01, T:0.39
Consensus pattern (29 bp):
CCCCACAACTTTTCAAAATTACATTTTAA
Found at i:26802636 original size:60 final size:60
Alignment explanation
Indices: 26802430--26802613 Score: 253
Period size: 60 Copynumber: 3.1 Consensus size: 60
26802420 GTCTATAGGT
* * ** *
26802430 CCCCAAACTTTTCCAAAATTATATTTTAACCTTAAAACTTTCTAAAAATTACATTTTAAC
1 CCCCAAACTTCTCTAAAATTATATTTTAACCCCACAACTTTCTAAAAATTACATTTTAAC
* *
26802490 CCCCAAACTTCTCTAAAATTATATTTTAACCCCACAACTTTCTAAAAATTATATTTTTAC
1 CCCCAAACTTCTCTAAAATTATATTTTAACCCCACAACTTTCTAAAAATTACATTTTAAC
* * * *
26802550 CCCTAAACTTCTCTAAAATTATATTTTAACCCCACATA-TTTTTGAAAATTACATTTTGAC
1 CCCCAAACTTCTCTAAAATTATATTTTAACCCCACA-ACTTTCTAAAAATTACATTTTAAC
26802610 CCCC
1 CCCC
26802614 CAAGTTTTAC
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
60 109 0.99
61 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.01, T:0.38
Consensus pattern (60 bp):
CCCCAAACTTCTCTAAAATTATATTTTAACCCCACAACTTTCTAAAAATTACATTTTAAC
Found at i:26802656 original size:29 final size:29
Alignment explanation
Indices: 26802618--26802754 Score: 104
Period size: 29 Copynumber: 4.7 Consensus size: 29
26802608 ACCCCCCAAG
* *
26802618 TTTTA-CAAAATT-TCATTTTTTGCCCCGA
1 TTTTACCAAAATTACCATTTTGT-CCCCGA
26802646 TTTTACCAAAATTACCATTTTGTCCCCGA
1 TTTTACCAAAATTACCATTTTGTCCCCGA
* * ** *
26802675 TTTCACCAAAATAACCATTTTACCCCCAAA
1 TTTTACCAAAATTACCATTTTGTCCCC-GA
* *
26802705 CTTT-CTAAAATT-CCATTTT-TAGCCCTCGA
1 TTTTACCAAAATTACCATTTTGT--CCC-CGA
*
26802734 TTTCACCAAAATTACCATTTT
1 TTTTACCAAAATTACCATTTT
26802755 ACCCTTAAAC
Statistics
Matches: 85, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
28 12 0.14
29 48 0.56
30 18 0.21
31 7 0.08
ACGTcount: A:0.30, C:0.27, G:0.04, T:0.39
Consensus pattern (29 bp):
TTTTACCAAAATTACCATTTTGTCCCCGA
Found at i:26802666 original size:28 final size:29
Alignment explanation
Indices: 26802634--26802755 Score: 117
Period size: 29 Copynumber: 4.2 Consensus size: 29
26802624 AAAATTTCAT
* *
26802634 TTTTTGCCCCGATTTTACCAAAATTACCA
1 TTTTAGCCCCGATTTCACCAAAATTACCA
*
26802663 TTTT-GTCCCCGATTTCACCAAAATAACCA
1 TTTTAG-CCCCGATTTCACCAAAATTACCA
* * *
26802692 TTTTACCCCCAAACTTT--CTAAAATT-CCA
1 TTTTAGCCCC-GA-TTTCACCAAAATTACCA
26802720 TTTTTAGCCCTCGATTTCACCAAAATTACCA
1 -TTTTAGCCC-CGATTTCACCAAAATTACCA
26802751 TTTTA
1 TTTTA
26802756 CCCTTAAACT
Statistics
Matches: 75, Mismatches: 9, Indels: 17
0.74 0.09 0.17
Matches are distributed among these distances:
28 7 0.09
29 48 0.64
30 14 0.19
31 6 0.08
ACGTcount: A:0.30, C:0.29, G:0.05, T:0.37
Consensus pattern (29 bp):
TTTTAGCCCCGATTTCACCAAAATTACCA
Found at i:26802694 original size:59 final size:59
Alignment explanation
Indices: 26802651--26802875 Score: 194
Period size: 59 Copynumber: 3.8 Consensus size: 59
26802641 CCCGATTTTA
26802651 CCAAAATTACCATTTTGT-CCC-CGATTTCACCAAAATAACCA-TTTTACCCCCAAACTTT
1 CCAAAATT-CCATTTT-TACCCTCGATTTCACCAAAATAACCATTTTTACCCCCAAACTTT
* * **
26802709 CTAAAATTCCATTTTTAGCCCTCGATTTCACCAAAATTACCA-TTTTACCCTTAAACTTT
1 CCAAAATTCCATTTTTA-CCCTCGATTTCACCAAAATAACCATTTTTACCCCCAAACTTT
** * * * * * * *
26802768 CCAAACCTCTATTCTTAACCTTGATTTTACCAAAAATTACCA-TTTTACCCCCAAATTTT
1 CCAAAATTCCATTTTTACCCTCGATTTCACC-AAAATAACCATTTTTACCCCCAAACTTT
* * * * *
26802827 CTAAAATTCCATTTTTGACCC-CAATTTTATCAAAATTACCA-TTTTACCC
1 CCAAAATTCCATTTTT-ACCCTCGATTTCACCAAAATAACCATTTTTACCC
26802876 TCGGGTATCT
Statistics
Matches: 138, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
56 1 0.01
57 7 0.05
58 39 0.28
59 88 0.64
60 3 0.02
ACGTcount: A:0.32, C:0.29, G:0.03, T:0.36
Consensus pattern (59 bp):
CCAAAATTCCATTTTTACCCTCGATTTCACCAAAATAACCATTTTTACCCCCAAACTTT
Found at i:26802772 original size:29 final size:30
Alignment explanation
Indices: 26802645--26802876 Score: 110
Period size: 29 Copynumber: 7.9 Consensus size: 30
26802635 TTTTGCCCCG
* **
26802645 ATTTTACCAAAATTACCATTTTGTCCC--CG
1 ATTTTACCAAAATTACCATTTT-ACCCTTAA
* * **
26802674 ATTTCACCAAAATAACCATTTTACCCCCAA
1 ATTTTACCAAAATTACCATTTTACCCTTAA
* * **
26802704 ACTTT-CTAAAATT-CCATTTTTAGCCC-TCG
1 ATTTTACCAAAATTACCA-TTTTA-CCCTTAA
*
26802733 ATTTCACCAAAATTACCATTTTACCCTTAA
1 ATTTTACCAAAATTACCATTTTACCCTTAA
* ** * * *
26802763 ACTTT-CCAAACCT-CTATTCTTAACCTT-G
1 ATTTTACCAAAATTACCATT-TTACCCTTAA
**
26802791 ATTTTACCAAAAATTACCATTTTACCCCCAA
1 ATTTTACC-AAAATTACCATTTTACCCTTAA
* *
26802822 ATTTT-CTAAAATT-CCATTTTTGACCC--CA
1 ATTTTACCAAAATTACCA-TTTT-ACCCTTAA
*
26802850 ATTTTATCAAAATTACCATTTTACCCT
1 ATTTTACCAAAATTACCATTTTACCCT
26802877 CGGGTATCTA
Statistics
Matches: 150, Mismatches: 36, Indels: 34
0.68 0.16 0.15
Matches are distributed among these distances:
28 27 0.18
29 72 0.48
30 39 0.26
31 12 0.08
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.38
Consensus pattern (30 bp):
ATTTTACCAAAATTACCATTTTACCCTTAA
Found at i:26806418 original size:3 final size:3
Alignment explanation
Indices: 26806410--26806444 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
26806400 AACGAGGGAA
26806410 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
26806445 GTAACCTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:26806554 original size:3 final size:3
Alignment explanation
Indices: 26806548--26806581 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
26806538 TAATAATAAT
*
26806548 AAG AAG AAG AAG -AG AAG AAA AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
26806582 AAGTGAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:26807524 original size:25 final size:25
Alignment explanation
Indices: 26807486--26807546 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
26807476 AAATTGTGGC
*
26807486 GACGGCGACTATTGTCA-GGAGGGCT-
1 GACGGCGACGATTG-CATGGAGGG-TG
*
26807511 GATGGCGACGATTGCATGGAGGGTG
1 GACGGCGACGATTGCATGGAGGGTG
26807536 GACGGCGACGA
1 GACGGCGACGA
26807547 CGACTGGAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 3 0.10
25 28 0.90
ACGTcount: A:0.21, C:0.18, G:0.44, T:0.16
Consensus pattern (25 bp):
GACGGCGACGATTGCATGGAGGGTG
Found at i:26807848 original size:3 final size:3
Alignment explanation
Indices: 26807840--26807880 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
26807830 GGTTTATACA
26807840 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
26807881 ACCCTGCTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:26809712 original size:18 final size:19
Alignment explanation
Indices: 26809679--26809715 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
26809669 AATAATTTTT
26809679 AAAATTCAAAATATTTATA
1 AAAATTCAAAATATTTATA
*
26809698 AAAATTCTAAA-ATTTATA
1 AAAATTCAAAATATTTATA
26809716 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATTCAAAATATTTATA
Found at i:26815339 original size:18 final size:17
Alignment explanation
Indices: 26815299--26815339 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
26815289 TTGTTAGAAT
26815299 TTATTAATAAAATAAAA
1 TTATTAATAAAATAAAA
26815316 TT-TTAATATTAAAT-AAA
1 TTATTAATA--AAATAAAA
26815333 TTATTAA
1 TTATTAA
26815340 AATAATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 6 0.29
17 7 0.33
18 8 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTATTAATAAAATAAAA
Found at i:26823719 original size:3 final size:3
Alignment explanation
Indices: 26823711--26823738 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
26823701 TGGGTTTTAT
26823711 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
26823739 TATTATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:26824423 original size:23 final size:24
Alignment explanation
Indices: 26824395--26824443 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
26824385 ATGACTTTTG
*
26824395 AATATTATTTGAT-AATA-TTTTAA
1 AATATT-TTTAATAAATATTTTTAA
26824418 AATATTTTTAATAAATATTTTTAA
1 AATATTTTTAATAAATATTTTTAA
26824442 AA
1 AA
26824444 AATAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 5 0.22
23 10 0.43
24 8 0.35
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
AATATTTTTAATAAATATTTTTAA
Found at i:26824435 original size:13 final size:13
Alignment explanation
Indices: 26824416--26824447 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26824406 ATAATATTTT
26824416 AAAATATTTTTAA
1 AAAATATTTTTAA
*
26824429 TAAATATTTTTAA
1 AAAATATTTTTAA
26824442 AAAATA
1 AAAATA
26824448 ATAAATGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAAATATTTTTAA
Found at i:26830616 original size:17 final size:17
Alignment explanation
Indices: 26830587--26830637 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
26830577 CAACCCAACC
26830587 TAATT-TAATAATTAAAT
1 TAATTATAA-AATTAAAT
26830604 TAATTATAAAATTAAAT
1 TAATTATAAAATTAAAT
* *
26830621 TACTTAAAAAATTAAAT
1 TAATTATAAAATTAAAT
26830638 CTAAAAACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 28 0.90
18 3 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATTATAAAATTAAAT
Found at i:26831218 original size:20 final size:19
Alignment explanation
Indices: 26831191--26831233 Score: 77
Period size: 20 Copynumber: 2.2 Consensus size: 19
26831181 ACACAGATTA
26831191 ATCGATTTATTTAATTATT
1 ATCGATTTATTTAATTATT
26831210 ATCGAATTTATTTAATTATT
1 ATCG-ATTTATTTAATTATT
26831230 ATCG
1 ATCG
26831234 TATAAAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (19 bp):
ATCGATTTATTTAATTATT
Found at i:26831327 original size:2 final size:2
Alignment explanation
Indices: 26831320--26831356 Score: 51
Period size: 2 Copynumber: 19.0 Consensus size: 2
26831310 TTAAACTTAC
26831320 AT AT AT AT AT AT AT AT AT AT AT AT CAT A- AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT
26831357 TACATTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
1 2 0.06
2 28 0.88
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26837377 original size:11 final size:11
Alignment explanation
Indices: 26837361--26837395 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
26837351 TTACATAGGG
26837361 ATTATTTATTA
1 ATTATTTATTA
26837372 ATTATTTATTA
1 ATTATTTATTA
26837383 ATTATTTATTA
1 ATTATTTATTA
26837394 AT
1 AT
26837396 CAGCTGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
ATTATTTATTA
Found at i:26838725 original size:28 final size:28
Alignment explanation
Indices: 26838693--26838748 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
26838683 GATTTCAAAA
26838693 AATTATAA-AATAACTATTCGAAAGTTTC
1 AATTA-AATAATAACTATTCGAAAGTTTC
*
26838721 AATTAAATTATTAACTATTCGAAAGTTT
1 AATTAAA-TAATAACTATTCGAAAGTTT
26838749 TTATCTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 2 0.08
28 5 0.20
29 18 0.72
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (28 bp):
AATTAAATAATAACTATTCGAAAGTTTC
Found at i:26842402 original size:15 final size:16
Alignment explanation
Indices: 26842379--26842417 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
26842369 AAATTTAGTA
26842379 ATTATATTTTAATTTG
1 ATTATATTTTAATTTG
26842395 ATTA-ATTTTAATTT-
1 ATTATATTTTAATTTG
26842409 -TTATATTTT
1 ATTATATTTT
26842418 TCAAATGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 3 0.14
14 5 0.23
15 10 0.45
16 4 0.18
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (16 bp):
ATTATATTTTAATTTG
Found at i:26842922 original size:29 final size:30
Alignment explanation
Indices: 26842891--26842948 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
26842881 GAAGATTCTA
26842891 AAAAT-AAAATTTT-GATTTTAAAAATATT
1 AAAATGAAAATTTTAGATTTTAAAAATATT
* **
26842919 AAAATGTACTTTTTAGATTTTAAAAATATT
1 AAAATGAAAATTTTAGATTTTAAAAATATT
26842949 TTATATATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 5 0.20
29 5 0.20
30 15 0.60
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (30 bp):
AAAATGAAAATTTTAGATTTTAAAAATATT
Found at i:26843392 original size:24 final size:24
Alignment explanation
Indices: 26843358--26843405 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
26843348 CAAAAATATG
*
26843358 AAAAGTTAAAGAAGATGAAAGGTT
1 AAAAGTCAAAGAAGATGAAAGGTT
*
26843382 AAAAGTCAAAGGAGATGAAAGGTT
1 AAAAGTCAAAGAAGATGAAAGGTT
26843406 GAACATTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.52, C:0.02, G:0.27, T:0.19
Consensus pattern (24 bp):
AAAAGTCAAAGAAGATGAAAGGTT
Found at i:26848385 original size:77 final size:77
Alignment explanation
Indices: 26848255--26848409 Score: 265
Period size: 77 Copynumber: 2.0 Consensus size: 77
26848245 AAGTATATTT
* * * *
26848255 AACTTTTTCTAAGTTTTTTATACGACATATCCAAATATTGAACATGAGCTTCTAGTGTCAAAAAT
1 AACTTTTTCCAAGTTTTTCATACGACATATCCAAATATTGAACATGAACTTCTAGTGTAAAAAAT
26848320 AATAATCTAATA
66 AATAATCTAATA
*
26848332 AACTTTTTCCAAGTTTTTCATACGACATATCCAAATATTGAACATGAATTTCTAGTGTAAAAAAT
1 AACTTTTTCCAAGTTTTTCATACGACATATCCAAATATTGAACATGAACTTCTAGTGTAAAAAAT
26848397 AATAATCTAATA
66 AATAATCTAATA
26848409 A
1 A
26848410 TTTAATAGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
77 73 1.00
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (77 bp):
AACTTTTTCCAAGTTTTTCATACGACATATCCAAATATTGAACATGAACTTCTAGTGTAAAAAAT
AATAATCTAATA
Found at i:26849407 original size:40 final size:37
Alignment explanation
Indices: 26849370--26849441 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
26849360 TAATTATTAA
* *
26849370 ATACATAAATTTGAATTGTTAATTTTTATTAATTTATT
1 ATACAGAAA-TTGAACTGTTAATTTTTATTAATTTATT
* * *
26849408 CTATAGAAATTGAACTGTTAATTTTTTTTAATTT
1 ATACAGAAATTGAACTGTTAATTTTTATTAATTT
26849442 CAAAAATTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 23 0.79
38 6 0.21
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (37 bp):
ATACAGAAATTGAACTGTTAATTTTTATTAATTTATT
Found at i:26860460 original size:24 final size:24
Alignment explanation
Indices: 26860428--26860477 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
26860418 CATTACTAAA
26860428 TTGGCCTTCGAGAGAAGGGAAGAG
1 TTGGCCTTCGAGAGAAGGGAAGAG
26860452 TTGGCCTTCGAGAGAAGGGAAGAG
1 TTGGCCTTCGAGAGAAGGGAAGAG
26860476 TT
1 TT
26860478 ACTATGATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.28, C:0.12, G:0.40, T:0.20
Consensus pattern (24 bp):
TTGGCCTTCGAGAGAAGGGAAGAG
Found at i:26861528 original size:43 final size:43
Alignment explanation
Indices: 26861481--26861563 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
26861471 GTTGAAATAA
* * *
26861481 AATAGAAGTTGTGATAATTATATATTTAAAAATAATTAAATTT
1 AATAGAAGTTGTGATAAGTACACATTTAAAAATAATTAAATTT
26861524 AATAGAAGTTGTGATAAGTACACATTTAAAAATAATTAAA
1 AATAGAAGTTGTGATAAGTACACATTTAAAAATAATTAAA
26861564 ATTATAATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (43 bp):
AATAGAAGTTGTGATAAGTACACATTTAAAAATAATTAAATTT
Found at i:26868513 original size:3 final size:3
Alignment explanation
Indices: 26868505--26868530 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26868495 ACAAATCACT
26868505 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
26868531 TTTCTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:26870835 original size:21 final size:19
Alignment explanation
Indices: 26870791--26870835 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
26870781 AATCAAATTT
*
26870791 TTAAACCTAAATATTAATC
1 TTAAACCTAAATATAAATC
*
26870810 CTAAACACTAAACTATAAATC
1 TTAAAC-CTAAA-TATAAATC
26870831 TTAAA
1 TTAAA
26870836 TTTTGTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 5 0.24
21 11 0.52
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (19 bp):
TTAAACCTAAATATAAATC
Found at i:26872568 original size:20 final size:21
Alignment explanation
Indices: 26872545--26872584 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
26872535 TTATATAATT
26872545 ATATAATTATATTT-ATATTA
1 ATATAATTATATTTAATATTA
*
26872565 ATATAATTTTATTTAATATT
1 ATATAATTATATTTAATATT
26872585 TTTATGAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATATAATTATATTTAATATTA
Found at i:26873719 original size:15 final size:15
Alignment explanation
Indices: 26873701--26873735 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26873691 TCACCCAATT
26873701 TTTTTTAATTTTATA
1 TTTTTTAATTTTATA
*
26873716 TTTTTTAGTTTTATA
1 TTTTTTAATTTTATA
*
26873731 ATTTT
1 TTTTT
26873736 ATAGTCACGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (15 bp):
TTTTTTAATTTTATA
Found at i:26878923 original size:22 final size:22
Alignment explanation
Indices: 26878898--26878941 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26878888 ATAACATTAA
*
26878898 AATTAAATTAAAAGAACAAATT
1 AATTAAATTAAAAAAACAAATT
* *
26878920 AATTAATTTAAAAAAATAAATT
1 AATTAAATTAAAAAAACAAATT
26878942 TAACTAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (22 bp):
AATTAAATTAAAAAAACAAATT
Found at i:26878954 original size:22 final size:22
Alignment explanation
Indices: 26878929--26878977 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
26878919 TAATTAATTT
*
26878929 AAAAAAAT--AAATTTAACTAA
1 AAAAAAATAAAAATTAAACTAA
*
26878949 AAAAAAATAAAAATTAAATTAA
1 AAAAAAATAAAAATTAAACTAA
*
26878971 TAAAAAA
1 AAAAAAA
26878978 CAACTTAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 8 0.33
22 16 0.67
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (22 bp):
AAAAAAATAAAAATTAAACTAA
Found at i:26882441 original size:25 final size:25
Alignment explanation
Indices: 26882407--26882456 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
26882397 GATTATAATT
26882407 GTCAAATTGAACTTTGATACAAGAC
1 GTCAAATTGAACTTTGATACAAGAC
26882432 GTCAAATTGAACTTTGATACAAGAC
1 GTCAAATTGAACTTTGATACAAGAC
26882457 AGAGCCTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (25 bp):
GTCAAATTGAACTTTGATACAAGAC
Found at i:26885355 original size:17 final size:16
Alignment explanation
Indices: 26885329--26885367 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
26885319 CTAATATATA
*
26885329 TAAATGAAAATTGTAGT
1 TAAATGAAAATT-TAGC
*
26885346 TAAATTAAAATTTAGC
1 TAAATGAAAATTTAGC
26885362 TAAATG
1 TAAATG
26885368 TTTAGAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (16 bp):
TAAATGAAAATTTAGC
Found at i:26885393 original size:7 final size:7
Alignment explanation
Indices: 26885383--26885409 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
26885373 AAAAATTCAA
26885383 AAAATAG
1 AAAATAG
26885390 AAAATAG
1 AAAATAG
26885397 AAAATAG
1 AAAATAG
26885404 AAAATA
1 AAAATA
26885410 TATAAAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (7 bp):
AAAATAG
Found at i:26885566 original size:27 final size:26
Alignment explanation
Indices: 26885514--26885566 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
26885504 AAAGAATATG
*
26885514 AAAATTTTAAACATATAATTTTTTTT
1 AAAATTTTAAACATATAATTTATTTT
*
26885540 AAAATATTTAAATATAT-ATTTAATTTT
1 AAAAT-TTTAAACATATAATTT-ATTTT
26885567 TTACTCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
AAAATTTTAAACATATAATTTATTTT
Found at i:26885842 original size:22 final size:22
Alignment explanation
Indices: 26885817--26885884 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
26885807 ATTTAAGTTC
26885817 TTTATAATTTTTAAAAATTTAA
1 TTTATAATTTTTAAAAATTTAA
* * ** *
26885839 TTTAAAAATGATAAAATTTTAA
1 TTTATAATTTTTAAAAATTTAA
26885861 -TT-TAATCTTTT-AAAATTTACA
1 TTTATAAT-TTTTAAAAATTTA-A
26885882 TTT
1 TTT
26885885 TTATTATAAT
Statistics
Matches: 33, Mismatches: 10, Indels: 6
0.67 0.20 0.12
Matches are distributed among these distances:
20 9 0.27
21 5 0.15
22 19 0.58
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (22 bp):
TTTATAATTTTTAAAAATTTAA
Found at i:26887429 original size:48 final size:49
Alignment explanation
Indices: 26887373--26887608 Score: 217
Period size: 49 Copynumber: 4.8 Consensus size: 49
26887363 CAGATGCAGT
* * **
26887373 GGAGGCTTATGGAAGGTAGAATGATAATCTTGCTCTCCGATGTATG-GG
1 GGAGGCTTATGGAAGGTAGAATAATAATCTTGCTCTCAGACATATGAGG
* * * **
26887421 GGAGGCTTACGGAAGGTAGAATAATAACCTTGTTCTCAGACATATGATA
1 GGAGGCTTATGGAAGGTAGAATAATAATCTTGCTCTCAGACATATGAGG
* * * * * * * *
26887470 GGAGGCTTACGAAAGGTGGAAATAATAACCCTGTTCTCATACCTATG-GG
1 GGAGGCTTATGGAAGGTAG-AATAATAATCTTGCTCTCAGACATATGAGG
* * * *
26887519 GGAGGCTTATGGAAGGAAGAATAATAATCTTGCTCCCATATC-CATGAGG
1 GGAGGCTTATGGAAGGTAGAATAATAATCTTGCTCTCAGA-CATATGAGG
* * *
26887568 GGAGACTTATGGAAGGTAGAATAATAATCCTGCTCCCAGAC
1 GGAGGCTTATGGAAGGTAGAATAATAATCTTGCTCTCAGAC
26887609 GCATTGAAAG
Statistics
Matches: 155, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
48 60 0.39
49 71 0.46
50 24 0.15
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (49 bp):
GGAGGCTTATGGAAGGTAGAATAATAATCTTGCTCTCAGACATATGAGG
Found at i:26889462 original size:25 final size:25
Alignment explanation
Indices: 26889434--26889481 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26889424 AAATGCTGCA
* *
26889434 TTGTTAATGTTGTCCGAATATTGCG
1 TTGTTAATGATGTCCAAATATTGCG
*
26889459 TTGTTAATGATGTCTAAATATTG
1 TTGTTAATGATGTCCAAATATTG
26889482 TATTATTGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.08, G:0.21, T:0.46
Consensus pattern (25 bp):
TTGTTAATGATGTCCAAATATTGCG
Found at i:26895200 original size:16 final size:15
Alignment explanation
Indices: 26895169--26895203 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26895159 GCAGTAAAAA
*
26895169 TTCAATACTTAATTT
1 TTCAACACTTAATTT
*
26895184 TTCAACACTTAAATT
1 TTCAACACTTAATTT
26895199 TTCAA
1 TTCAA
26895204 TTTATTAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (15 bp):
TTCAACACTTAATTT
Found at i:26898050 original size:37 final size:38
Alignment explanation
Indices: 26898000--26898103 Score: 102
Period size: 37 Copynumber: 2.7 Consensus size: 38
26897990 GTCGAAGCAA
* *
26898000 TAAAGTGACACCCAGTGTCTCATCG-GTCTAGCCGAAG
1 TAAAGTGATACCCAGTGTCTCATCGAATCTAGCCGAAG
* ** *
26898037 TAAAGTGATACCCAATACCTCATCGAATCTATCCGAAG
1 TAAAGTGATACCCAGTGTCTCATCGAATCTAGCCGAAG
* *
26898075 TAAAATAATGATACCTAGTGTCTCATCGA
1 T--AA-AGTGATACCCAGTGTCTCATCGA
26898104 CTCAAGGTCG
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
37 21 0.40
38 11 0.21
40 2 0.04
41 18 0.35
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (38 bp):
TAAAGTGATACCCAGTGTCTCATCGAATCTAGCCGAAG
Found at i:26900819 original size:63 final size:63
Alignment explanation
Indices: 26900720--26900850 Score: 235
Period size: 63 Copynumber: 2.1 Consensus size: 63
26900710 ACTCGAGTTA
** *
26900720 CTACTTCCTCTGTAGATTTTGGATGTTTGGAACATGTCGATCGGATCAGCGAGAAGCACACAC
1 CTACTTCCTCTGTAGATTTTGGACATTTGGAACATGTCGATCGGATCAACGAGAAGCACACAC
26900783 CTACTTCCTCTGTAGATTTTGGACATTTGGAACATGTCGATCGGATCAACGAGAAGCACACAC
1 CTACTTCCTCTGTAGATTTTGGACATTTGGAACATGTCGATCGGATCAACGAGAAGCACACAC
26900846 CTACT
1 CTACT
26900851 GTTTCCCAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (63 bp):
CTACTTCCTCTGTAGATTTTGGACATTTGGAACATGTCGATCGGATCAACGAGAAGCACACAC
Found at i:26901719 original size:54 final size:53
Alignment explanation
Indices: 26901651--26901758 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 53
26901641 TAGCTCAATC
26901651 TCGACGATCGGGACGGATTAGGGGTGTTACAATTTATCTTATTTTTTTTATTGA
1 TCGACGATCGGGACGGATTAGGGGTGTTACAATTTATCTTA-TTTTTTTATTGA
*
26901705 TCGACGATCGGGACGGGTTAGGGGTGTTACAATTTATCTTATTTTTTTATTGA
1 TCGACGATCGGGACGGATTAGGGGTGTTACAATTTATCTTATTTTTTTATTGA
26901758 T
1 T
26901759 ATTGTTGAAG
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 13 0.25
54 40 0.75
ACGTcount: A:0.21, C:0.11, G:0.25, T:0.43
Consensus pattern (53 bp):
TCGACGATCGGGACGGATTAGGGGTGTTACAATTTATCTTATTTTTTTATTGA
Found at i:26901841 original size:12 final size:12
Alignment explanation
Indices: 26901797--26901879 Score: 55
Period size: 12 Copynumber: 7.1 Consensus size: 12
26901787 CAAATTTTGG
26901797 ATTTTAAATTTA
1 ATTTTAAATTTA
** *
26901809 GGTTTAAA-TTG
1 ATTTTAAATTTA
*
26901820 A-TTCAAATTTA
1 ATTTTAAATTTA
*
26901831 TTTTTAAATTTA
1 ATTTTAAATTTA
* *
26901843 AATTT-ATTTTA
1 ATTTTAAATTTA
*
26901854 AATTTAAATTTA
1 ATTTTAAATTTA
*
26901866 TCTTTTAAATTTA
1 -ATTTTAAATTTA
26901879 A
1 A
26901880 ATTTGCTTTA
Statistics
Matches: 52, Mismatches: 15, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
10 5 0.10
11 14 0.27
12 23 0.44
13 10 0.19
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (12 bp):
ATTTTAAATTTA
Found at i:26901842 original size:6 final size:6
Alignment explanation
Indices: 26901833--26901899 Score: 66
Period size: 6 Copynumber: 11.3 Consensus size: 6
26901823 CAAATTTATT
* **
26901833 TTTAAA TTTAAA TTT-AT TTTAAA TTTAAA TTTATCT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA-AA TTTAAA TTTAAA
**
26901881 TTT-GC TTTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TT
26901900 CAATCAAATT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
5 7 0.15
6 37 0.77
7 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (6 bp):
TTTAAA
Found at i:26901854 original size:17 final size:18
Alignment explanation
Indices: 26901824--26901899 Score: 111
Period size: 17 Copynumber: 4.3 Consensus size: 18
26901814 AAATTGATTC
26901824 AAATTTATTTTTAAATTT
1 AAATTTATTTTTAAATTT
26901842 AAATTTA-TTTTAAATTT
1 AAATTTATTTTTAAATTT
26901859 AAATTTATCTTTTAAATTT
1 AAATTTAT-TTTTAAATTT
**
26901878 AAATTT-GCTTTAAATTT
1 AAATTTATTTTTAAATTT
26901895 AAATT
1 AAATT
26901900 CAATCAAATT
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
17 31 0.57
18 7 0.13
19 16 0.30
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (18 bp):
AAATTTATTTTTAAATTT
Found at i:26901877 original size:36 final size:35
Alignment explanation
Indices: 26901824--26901899 Score: 125
Period size: 36 Copynumber: 2.1 Consensus size: 35
26901814 AAATTGATTC
*
26901824 AAATTTATTTTTAAATTTAAATTTATTTTAAATTT
1 AAATTTATTTTTAAATTTAAATTTACTTTAAATTT
*
26901859 AAATTTATCTTTTAAATTTAAATTTGCTTTAAATTT
1 AAATTTAT-TTTTAAATTTAAATTTACTTTAAATTT
26901895 AAATT
1 AAATT
26901900 CAATCAAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 8 0.21
36 30 0.79
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (35 bp):
AAATTTATTTTTAAATTTAAATTTACTTTAAATTT
Found at i:26908410 original size:100 final size:100
Alignment explanation
Indices: 26908237--26909013 Score: 995
Period size: 100 Copynumber: 7.7 Consensus size: 100
26908227 AAATACAACG
26908237 GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAGT
1 GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAGT
*
26908302 CGCAACGGCAGACCGTGTAGCTCAGAAGCATGAAA
66 CGCAACGGCAGACCGTGTACCTCAGAAGCATGAAA
* * * *
26908337 GGAAATATCTAAGACTGCAACGGCGGATCCAGTACCGCAAAAATATAAAAGGGAAAGGTCTAAGT
1 GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAGT
* *
26908402 CGCAACGGCAGACCGTGTACCTCAGGAGTATGAAA
66 CGCAACGGCAGACCGTGTACCTCAGAAGCATGAAA
* * * *
26908437 GGGAAAGATCTAAGACCACAATGGCAGATCCAGTA-CGACAAAAACACAAAAGGAAAAGGTCTAA
1 -GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCG-CAAAAACACAAAAGGGAAAGGTCTAA
* * *
26908501 GTCGCAATGGCGGACCGTGTACCTCAGAAGCATAAAA
64 GTCGCAACGGCAGACCGTGTACCTCAGAAGCATGAAA
* ** * * * * * * *
26908538 GGAAAGATCTAAAATTGTAACGGCGGATCCAGTACCACAAAGATATAGAAGGGAAATGTCTAAGT
1 GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAGT
* *
26908603 CGTAACGGCAGACCGTGTACCTTAGAAGCATGAAA
66 CGCAACGGCAGACCGTGTACCTCAGAAGCATGAAA
* * **
26908638 GGAAAAGATCTAAGACCGTAATGGTAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
1 GG-AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
*
26908703 TCGCAACGGC-GAACCGTGTACCTCAGAAGCATGAAG
65 TCGCAACGGCAG-ACCGTGTACCTCAGAAGCATGAAA
* * * * *
26908739 GGAAAGATCTAAGACCGCAACGGCGGATCCAGTATCGTAAAGATACAGAAGGGAAAGGTCTAAGT
1 GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAGT
***
26908804 CGCAACGATGGACCGTGTACCTCAGAAGCATGAAA
66 CGCAACGGCAGACCGTGTACCTCAGAAGCATGAAA
* * *
26908839 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGAGAAAGGTCTAAG
1 -GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
* * * *
26908904 TCGCAACGG-TGAACCGTGTGCCTCAAAAGCATGAAG
65 TCGCAACGGCAG-ACCGTGTACCTCAGAAGCATGAAA
* * * * *
26908940 GGAAAGATCTAAGACCGCAATGG-GGAATCCAGTACCGCAAAGATACAGAAGGGAAAGTTCTAAG
1 GGAAAGATCTAAGACCGCAACGGCGG-ATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
*
26909004 TAGCAACGGC
65 TCGCAACGGC
26909014 GGATCCAGTA
Statistics
Matches: 581, Mismatches: 86, Indels: 19
0.85 0.13 0.03
Matches are distributed among these distances:
99 1 0.00
100 326 0.56
101 254 0.44
ACGTcount: A:0.39, C:0.20, G:0.26, T:0.14
Consensus pattern (100 bp):
GGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAGT
CGCAACGGCAGACCGTGTACCTCAGAAGCATGAAA
Found at i:26908592 original size:201 final size:201
Alignment explanation
Indices: 26908236--26909013 Score: 1123
Period size: 201 Copynumber: 3.9 Consensus size: 201
26908226 GAAATACAAC
* * *
26908236 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGAAAAGGTCTAAG
* * *
26908301 TCGCAACGGC-AGACCGTGTAGCTCAGAAGCATGAAAGGAAATATCTAAGACTGCAACGGCGGAT
66 TCGCAACGGCGA-ACCGTGTACCTCAGAAGCATGAAAGGAAAGATCTAAGACCGCAACGGCGGAT
* * * *
26908365 CCAGTACCGCAAAAATATAAAAGGGAAAGGTCTAAGTCGCAACGGCAGACCGTGTACCTCAGGAG
130 CCAGTACCGCAAAGATACAGAAGGGAAAGGTCTAAGTCGCAACGGCAGACCGTGTACCTCAGAAG
*
26908430 TATGAAA
195 CATGAAA
*
26908437 GGGAAAGATCTAAGACCACAATGGCAGATCCAGTA-CGACAAAAACACAAAAGGAAAAGGTCTAA
1 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCG-CAAAAACACAAAAGGAAAAGGTCTAA
* * * * ** *
26908501 GTCGCAATGGCGGACCGTGTACCTCAGAAGCATAAAAGGAAAGATCTAAAATTGTAACGGCGGAT
65 GTCGCAACGGCGAACCGTGTACCTCAGAAGCATGAAAGGAAAGATCTAAGACCGCAACGGCGGAT
* * * * *
26908566 CCAGTACCACAAAGATATAGAAGGGAAATGTCTAAGTCGTAACGGCAGACCGTGTACCTTAGAAG
130 CCAGTACCGCAAAGATACAGAAGGGAAAGGTCTAAGTCGCAACGGCAGACCGTGTACCTCAGAAG
26908631 CATGAAA
195 CATGAAA
* * * *
26908638 GGAAAAGATCTAAGACCGTAATGGTAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGAAAAGGTCTAAG
*
26908703 TCGCAACGGCGAACCGTGTACCTCAGAAGCATGAAGGGAAAGATCTAAGACCGCAACGGCGGATC
66 TCGCAACGGCGAACCGTGTACCTCAGAAGCATGAAAGGAAAGATCTAAGACCGCAACGGCGGATC
* * ***
26908768 CAGTATCGTAAAGATACAGAAGGGAAAGGTCTAAGTCGCAACGATGGACCGTGTACCTCAGAAGC
131 CAGTACCGCAAAGATACAGAAGGGAAAGGTCTAAGTCGCAACGGCAGACCGTGTACCTCAGAAGC
26908833 ATGAAA
196 ATGAAA
26908839 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAA-GAGAAAGGTCTAA
1 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGA-AAAGGTCTAA
* * * * *
26908903 GTCGCAACGGTGAACCGTGTGCCTCAAAAGCATGAAGGGAAAGATCTAAGACCGCAATGG-GGAA
65 GTCGCAACGGCGAACCGTGTACCTCAGAAGCATGAAAGGAAAGATCTAAGACCGCAACGGCGG-A
* *
26908967 TCCAGTACCGCAAAGATACAGAAGGGAAAGTTCTAAGTAGCAACGGC
129 TCCAGTACCGCAAAGATACAGAAGGGAAAGGTCTAAGTCGCAACGGC
26909014 GGATCCAGTA
Statistics
Matches: 515, Mismatches: 57, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
200 5 0.01
201 508 0.99
202 2 0.00
ACGTcount: A:0.39, C:0.20, G:0.26, T:0.14
Consensus pattern (201 bp):
GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGAAAAGGTCTAAG
TCGCAACGGCGAACCGTGTACCTCAGAAGCATGAAAGGAAAGATCTAAGACCGCAACGGCGGATC
CAGTACCGCAAAGATACAGAAGGGAAAGGTCTAAGTCGCAACGGCAGACCGTGTACCTCAGAAGC
ATGAAA
Found at i:26909059 original size:100 final size:101
Alignment explanation
Indices: 26908236--26909175 Score: 646
Period size: 100 Copynumber: 9.4 Consensus size: 101
26908226 GAAATACAAC
* *
26908236 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGACACAGAAGGGAAAGGTCTAAG
* * *
26908301 TCGCAACGGCAG-ACCGTGTAGCTC--AGA-AGCATGAA
66 TCGCAACGGCGGAACC-AGTACCTCAAAGATA-CA-GAA
* * * * * * *
26908336 AGGAAATATCTAAGACTGCAACGGCGGATCCAGTACCGCAAAAATATAAAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGACACAGAAGGGAAAGGTCTAAG
* * * *
26908401 TCGCAACGGCAG-ACCGTGTACCTC-AGGAGTA-TGAAA
66 TCGCAACGGCGGAACC-AGTACCTCAAAGA-TACAG-AA
* * * * * *
26908437 GGGAAAGATCTAAGACCACAATGGCAGATCCAGTA-CGACAAAAACACAAAAGGAAAAGGTCTAA
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCG-CAAAGACACAGAAGGGAAAGGTCTAA
* *
26908501 GTCGCAATGGCGG-ACCGTGTACCTCAGAAGCATA-A-AA
65 GTCGCAACGGCGGAACC-AGTACCTCA-AAG-ATACAGAA
* ** * * * * *
26908538 -GGAAAGATCTAAAATTGTAACGGCGGATCCAGTACCACAAAGATATAGAAGGGAAATGTCTAAG
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGACACAGAAGGGAAAGGTCTAAG
* * * * *
26908602 TCGTAACGGCAG-ACCGTGTACCTTAGAAGCAT-GA-AA
66 TCGCAACGGCGGAACC-AGTACCTCA-AAG-ATACAGAA
* * * ** * *
26908638 GGAAAAGATCTAAGACCGTAATGGTAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGACACAGAAGGGAAAGGTCTAAG
*
26908703 TCGCAACGGC-GAACCGTGTACCTC--AGA-AGCATGAA
66 TCGCAACGGCGGAACC-AGTACCTCAAAGATA-CA-GAA
* * *
26908738 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTATCGTAAAGATACAGAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGACACAGAAGGGAAAGGTCTAAG
** * *
26908803 TCGCAACGATGG-ACCGTGTACCTCAGAAGCAT-GA-AA
66 TCGCAACGGCGGAACC-AGTACCTCA-AAG-ATACAGAA
* * * * *
26908839 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGAGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGACACAGAAGGGAAAGGTCTAAG
* * * *
26908904 TCGCAACGG-TGAACCGTGTGCCTCAAA-A-GCATGAA
66 TCGCAACGGCGGAACC-AGTACCTCAAAGATACA-GAA
* * *
26908939 GGGAAAGATCTAAGACCGCAATGG-GGAATCCAGTACCGCAAAGATACAGAAGGGAAAGTTCTAA
1 GGGAAAGATCTAAGACCGCAACGGCGG-ATCCAGTACCGCAAAGACACAGAAGGGAAAGGTCTAA
* * * *
26909003 GTAGCAACGGCGGATCCAGTAACGCAAAGATACAGAA
65 GTCGCAACGGCGGAACCAGTACCTCAAAGATACAGAA
* * * * * * *
26909040 GGGAAAGGTCTAAG-TCGCAACGGTGGA-CCGTGTACCTCAGAA-ACA-TGAAGGGAAAGATCTA
1 GGGAAAGATCTAAGACCGCAACGGCGGATCC-AGTACCGCA-AAGACACAGAAGGGAAAGGTCTA
* * * * * * * *
26909101 AGACCGCAATGGCAGATCCAGCACCACAAATATACAAAA
64 AG-TCGCAACGGCGGAACCAGTACCTCAAAGATACAGAA
* * * * *
26909140 GGGAAAGGTCTAAG-TCGCAACGACGAACCCAGTACC
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACC
26909176 TTAGAAACAG
Statistics
Matches: 690, Mismatches: 115, Indels: 70
0.79 0.13 0.08
Matches are distributed among these distances:
97 1 0.00
98 5 0.01
99 19 0.03
100 393 0.57
101 260 0.38
102 2 0.00
103 8 0.01
104 2 0.00
ACGTcount: A:0.39, C:0.21, G:0.26, T:0.14
Consensus pattern (101 bp):
GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGACACAGAAGGGAAAGGTCTAAG
TCGCAACGGCGGAACCAGTACCTCAAAGATACAGAA
Found at i:26909172 original size:150 final size:150
Alignment explanation
Indices: 26908227--26909173 Score: 580
Period size: 150 Copynumber: 6.3 Consensus size: 150
26908217 TAGCATCATG
* * * * * * * * *
26908227 AAATAC-AACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAACACAAAAGGGA
1 AAATACAAAAGGGAAAGGTCTAAG-TCGCAACGGCGAACCCAGTAACGCAAAGATACAGAAGGGA
* * * * * *
26908291 AAGGTCTAAGTCGCAACGGCAGACCGTGTAGCTCAGAAGCATGAAAGGAAATATCTAAGACTGCA
65 AAGGTCTAAGTCGCAACGGCGGACCGTGTACCTCAGAAACATGAAGGGAAAGATCTAAGACCGCA
* **
26908356 ACGGCGGATCCAGTACCGCAA
130 ATGGTAGATCCAGTACCGCAA
* ** * * * *
26908377 AAATATAAAAGGGAAAGGTCTAAGTCGCAACGGC-AGACCGTGTACCTC-AGGAGTA-TGAAAGG
1 AAATACAAAAGGGAAAGGTCTAAGTCGCAACGGCGA-ACCCAGTAACGCAAAGA-TACAG-AAGG
* * * * * * ** * ** * *
26908439 GAAAGATCTAAGACCACAATGGCAGATCC-AGTACGACAAAAACACAAAAGGAAAAGGTCTAAG-
63 GAAAGGTCTAAG-TCGCAACGGCGGA-CCGTGTACCTCAGAAACA-TGAAGGGAAAGATCTAAGA
* ** * * *
26908502 TCGCAATGGCGGA-CCGTGTACCTCAG
125 CCGCAATGGTAGATCC-AGTACCGCAA
** * * * * * * * * * *
26908528 AAGCATAAAA-GGAAAGATCTAAAATTGTAACGGCGGATCCAGTACCACAAAGATATAGAAGGGA
1 AAATACAAAAGGGAAAGGTCT-AAGTCGCAACGGCGAACCCAGTAACGCAAAGATACAGAAGGGA
* * * * * * *
26908592 AATGTCTAAGTCGTAACGGCAGACCGTGTACCTTAGAAGCATGAAAGGAAAAGATCTAAGACCGT
65 AAGGTCTAAGTCGCAACGGCGGACCGTGTACCTCAGAAACATG-AAGGGAAAGATCTAAGACCGC
26908657 AATGGTAGATCCAGTACCGCAA
129 AATGGTAGATCCAGTACCGCAA
* ** **
26908679 AAACACAAAAGGGAAAGGTCTAAGTCGCAACGGCGAACCGTGT-AC-CTCAGA-AGCATGAAGGG
1 AAATACAAAAGGGAAAGGTCTAAGTCGCAACGGCGAACCCAGTAACGCAAAGATA-CA-GAAGGG
* * * * * * *
26908741 AAAGATCTAAGACCGCAACGGCGGATCC-AGTATCGTAAAGATACA-GAAGGGAAAGGTCTAAG-
64 AAAGGTCTAAG-TCGCAACGGCGGA-CCGTGTA-CCT-CAGAAACATGAAGGGAAAGATCTAAGA
* * * * * * *
26908803 TCGCAACGATGGA-CCGTGTACCTCAG
125 CCGCAATGGTAGATCC-AGTACCGCAA
** ** * * * * * * * * *
26908829 AAGCATGAAAGGGAAAGATCTAAGACCGCAATGGC-AGATCCAGTACCGCAAAAACACAAAAGAG
1 AAATACAAAAGGGAAAGGTCTAAG-TCGCAACGGCGA-ACCCAGTAACGCAAAGATACAGAAGGG
* * *
26908893 AAAGGTCTAAGTCGCAACGGTGAACCGTGTGCCTCA-AAAGCATGAAGGGAAAGATCTAAGACCG
64 AAAGGTCTAAGTCGCAACGGCGGACCGTGTACCTCAGAAA-CATGAAGGGAAAGATCTAAGACCG
*
26908957 CAATGG-GGAATCCAGTACCGCAA
128 CAATGGTAG-ATCCAGTACCGCAA
* * * * * *
26908980 AGATACAGAAGGGAAAGTTCTAAGTAGCAACGGCGGATCCAGTAACGCAAAGATACAGAAGGGAA
1 AAATACAAAAGGGAAAGGTCTAAGTCGCAACGGCGAACCCAGTAACGCAAAGATACAGAAGGGAA
*
26909045 AGGTCTAAGTCGCAACGGTGGACCGTGTACCTCAGAAACATGAAGGGAAAGATCTAAGACCGCAA
66 AGGTCTAAGTCGCAACGGCGGACCGTGTACCTCAGAAACATGAAGGGAAAGATCTAAGACCGCAA
* * *
26909110 TGGCAGATCCAGCACCACAA
131 TGGTAGATCCAGTACCGCAA
* *
26909130 ATATACAAAAGGGAAAGGTCTAAGTCGCAACGACGAACCCAGTA
1 AAATACAAAAGGGAAAGGTCTAAGTCGCAACGGCGAACCCAGTA
26909174 CCTTAGAAAC
Statistics
Matches: 595, Mismatches: 164, Indels: 76
0.71 0.20 0.09
Matches are distributed among these distances:
148 3 0.01
149 14 0.02
150 298 0.50
151 218 0.37
152 51 0.09
153 10 0.02
154 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.26, T:0.14
Consensus pattern (150 bp):
AAATACAAAAGGGAAAGGTCTAAGTCGCAACGGCGAACCCAGTAACGCAAAGATACAGAAGGGAA
AGGTCTAAGTCGCAACGGCGGACCGTGTACCTCAGAAACATGAAGGGAAAGATCTAAGACCGCAA
TGGTAGATCCAGTACCGCAA
Found at i:26909614 original size:19 final size:17
Alignment explanation
Indices: 26909578--26909640 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
26909568 GGTTTAAATT
26909578 AATTCAAATTTATTTTAA
1 AATT-AAATTTATTTTAA
26909596 AATTAAATTTATCTTTTAA
1 AATTAAATTTA--TTTTAA
* **
26909615 ATTTAAATTTGCTTTAA
1 AATTAAATTTATTTTAA
*
26909632 ATTTAAATT
1 AATTAAATT
26909641 CAACCAAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
17 21 0.52
18 4 0.10
19 15 0.38
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (17 bp):
AATTAAATTTATTTTAA
Found at i:26909809 original size:63 final size:63
Alignment explanation
Indices: 26909710--26909840 Score: 244
Period size: 63 Copynumber: 2.1 Consensus size: 63
26909700 ACTCGTGTTA
* *
26909710 CTACTTCCTCTGTAGATTTTGGATGTTTGGAACATGTCGATCGGATCAGCGAGAAGCACACAC
1 CTACTTCCTCTGTAGATTTTGGACGTTTGGAACATGTCGATCGGATCAACGAGAAGCACACAC
26909773 CTACTTCCTCTGTAGATTTTGGACGTTTGGAACATGTCGATCGGATCAACGAGAAGCACACAC
1 CTACTTCCTCTGTAGATTTTGGACGTTTGGAACATGTCGATCGGATCAACGAGAAGCACACAC
26909836 CTACT
1 CTACT
26909841 GTTTCCCAAT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (63 bp):
CTACTTCCTCTGTAGATTTTGGACGTTTGGAACATGTCGATCGGATCAACGAGAAGCACACAC
Found at i:26910778 original size:6 final size:6
Alignment explanation
Indices: 26910769--26910835 Score: 66
Period size: 6 Copynumber: 11.3 Consensus size: 6
26910759 CAAATTTATT
* **
26910769 TTTAAA TTTAAA TTT-AT TTTAAA TTTAAA TTTATCT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA-AA TTTAAA TTTAAA
**
26910817 TTT-GC TTTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TT
26910836 CAACCAAATT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
5 7 0.15
6 37 0.77
7 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (6 bp):
TTTAAA
Found at i:26910790 original size:17 final size:18
Alignment explanation
Indices: 26910760--26910835 Score: 111
Period size: 17 Copynumber: 4.3 Consensus size: 18
26910750 AAATTGATTC
26910760 AAATTTATTTTTAAATTT
1 AAATTTATTTTTAAATTT
26910778 AAATTTA-TTTTAAATTT
1 AAATTTATTTTTAAATTT
26910795 AAATTTATCTTTTAAATTT
1 AAATTTAT-TTTTAAATTT
**
26910814 AAATTT-GCTTTAAATTT
1 AAATTTATTTTTAAATTT
26910831 AAATT
1 AAATT
26910836 CAACCAAATT
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
17 31 0.57
18 7 0.13
19 16 0.30
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (18 bp):
AAATTTATTTTTAAATTT
Found at i:26910815 original size:36 final size:35
Alignment explanation
Indices: 26910760--26910835 Score: 125
Period size: 36 Copynumber: 2.1 Consensus size: 35
26910750 AAATTGATTC
*
26910760 AAATTTATTTTTAAATTTAAATTTATTTTAAATTT
1 AAATTTATTTTTAAATTTAAATTTACTTTAAATTT
*
26910795 AAATTTATCTTTTAAATTTAAATTTGCTTTAAATTT
1 AAATTTAT-TTTTAAATTTAAATTTACTTTAAATTT
26910831 AAATT
1 AAATT
26910836 CAACCAAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 8 0.21
36 30 0.79
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (35 bp):
AAATTTATTTTTAAATTTAAATTTACTTTAAATTT
Found at i:26912773 original size:30 final size:29
Alignment explanation
Indices: 26912711--26912903 Score: 192
Period size: 30 Copynumber: 6.5 Consensus size: 29
26912701 CAAAAAGTAT
** *
26912711 ATTTTAACCCT-AAACTTTTCCAAATTAT
1 ATTTTAACCCTAAAACTTTTTAAAATTAC
26912739 ATTTTAACCCTAAAACTTTTTATAAATTAC
1 ATTTTAACCCTAAAACTTTTTA-AAATTAC
* * * *
26912769 ATTTTGACCCTTAAACTTTTCCAAAATTAT
1 ATTTTAACCCTAAAACTTTT-TAAAATTAC
*
26912799 ATTTTAACCCTAAAACTTTCTATAAATTAC
1 ATTTTAACCCTAAAACTTTTTA-AAATTAC
* *
26912829 ATTTTGACCCCT-AAACTTTTTCAAAATTAT
1 ATTTT-AACCCTAAAACTTTTT-AAAATTAC
* *
26912859 GTTTTAACCCTAAAACTTTTCCAAAATTAC
1 ATTTTAACCCTAAAACTTTT-TAAAATTAC
*
26912889 ATTTTTACCTCTAAA
1 ATTTTAACC-CTAAA
26912904 TTTTCCATAA
Statistics
Matches: 135, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
28 11 0.08
29 14 0.10
30 98 0.73
31 12 0.09
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.42
Consensus pattern (29 bp):
ATTTTAACCCTAAAACTTTTTAAAATTAC
Found at i:26912856 original size:90 final size:89
Alignment explanation
Indices: 26912703--26912903 Score: 246
Period size: 90 Copynumber: 2.2 Consensus size: 89
26912693 AAACTATCCA
* * *
26912703 AAAAGTATATTTTAACCCT-AAACTTTTCCAAATTATATTTTAACCCTAAAACTTTTTATAAATT
1 AAAATTATATTTTAACCCTAAAACTTTTACAAATTACATTTTAACCCTAAAACTTTTTATAAATT
* *
26912767 ACATTTTGACCCTTAAACTTTTCC
66 ACATTTTAACCCTAAAACTTTTCC
* *
26912791 AAAATTATATTTTAACCCTAAAACTTTCTATAAATTACATTTTGACCCCT-AAACTTTTTCA-AA
1 AAAATTATATTTTAACCCTAAAACTTT-TACAAATTACATTTT-AACCCTAAAACTTTTT-ATAA
**
26912854 ATTATGTTTTAACCCTAAAACTTTTCC
63 ATTACATTTTAACCCTAAAACTTTTCC
* *
26912881 AAAATTACATTTTTACCTCTAAA
1 AAAATTATATTTTAACC-CTAAA
26912904 TTTTCCATAA
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
88 18 0.19
89 7 0.07
90 61 0.63
91 11 0.11
ACGTcount: A:0.37, C:0.19, G:0.02, T:0.41
Consensus pattern (89 bp):
AAAATTATATTTTAACCCTAAAACTTTTACAAATTACATTTTAACCCTAAAACTTTTTATAAATT
ACATTTTAACCCTAAAACTTTTCC
Found at i:26912920 original size:29 final size:29
Alignment explanation
Indices: 26912762--26913008 Score: 134
Period size: 30 Copynumber: 8.4 Consensus size: 29
26912752 AACTTTTTAT
* *
26912762 AAATTACATTTTGACC-CTTAAACTTTTCCA
1 AAATTCCATTTTTACCTC-TAAA-TTTTCCA
** * * *
26912792 AAATTATATTTTAACC-CTAAAACTTTCTA
1 AAATTCCATTTTTACCTCT-AAATTTTCCA
* * * *
26912821 TAAATTACATTTTGACCCCTAAACTTTTTCA
1 -AAATTCCATTTTTACCTCTAAA-TTTTCCA
26912852 AAATT--ATGTTTTAACC-CTAAAACTTTTCCA
1 AAATTCCAT-TTTT-ACCTCT-AAA-TTTTCCA
*
26912882 AAATTACATTTTTACCTCTAAATTTTCCA
1 AAATTCCATTTTTACCTCTAAATTTTCCA
* *
26912911 TAATTCCATTTTTACCTC--GATTTTACCA
1 AAATTCCATTTTTACCTCTAAATTTT-CCA
* * *
26912939 AAATTACCA-TTTTACCCCTAAACTTTCTA
1 AAATT-CCATTTTTACCTCTAAATTTTCCA
* * *
26912968 AAATTCCATTTTTGCCTC-CAATTTCACCA
1 AAATTCCATTTTTACCTCTAAATTT-TCCA
26912997 AAATTACCATTT
1 AAATT-CCATTT
26913009 ACCCCCGTAC
Statistics
Matches: 175, Mismatches: 25, Indels: 34
0.75 0.11 0.15
Matches are distributed among these distances:
27 5 0.03
28 24 0.14
29 58 0.33
30 74 0.42
31 12 0.07
32 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.02, T:0.41
Consensus pattern (29 bp):
AAATTCCATTTTTACCTCTAAATTTTCCA
Found at i:26912924 original size:60 final size:60
Alignment explanation
Indices: 26912711--26912915 Score: 285
Period size: 60 Copynumber: 3.5 Consensus size: 60
26912701 CAAAAAGTAT
* *
26912711 ATTTTAACCCTAAACTTTTCC-AAATTATATTTTAACCCTAAAACTTTT-TATAAATTAC
1 ATTTTGACCCTAAACTTTTCCAAAATTATATTTTAACCCTAAAACTTTTCCATAAATTAC
*
26912769 ATTTTGACCCTTAAACTTTTCCAAAATTATATTTTAACCCTAAAAC-TTTCTATAAATTAC
1 ATTTTGACCC-TAAACTTTTCCAAAATTATATTTTAACCCTAAAACTTTTCCATAAATTAC
* *
26912829 ATTTTGACCCCTAAACTTTTTCAAAATTATGTTTTAACCCTAAAACTTTTCCA-AAATTAC
1 ATTTTGA-CCCTAAACTTTTCCAAAATTATATTTTAACCCTAAAACTTTTCCATAAATTAC
* *
26912889 ATTTTTACCTCTAAA-TTTTCCATAATT
1 ATTTTGACC-CTAAACTTTTCCAAAATT
26912916 CCATTTTTAC
Statistics
Matches: 134, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
58 9 0.07
59 26 0.19
60 91 0.68
61 8 0.06
ACGTcount: A:0.36, C:0.20, G:0.01, T:0.43
Consensus pattern (60 bp):
ATTTTGACCCTAAACTTTTCCAAAATTATATTTTAACCCTAAAACTTTTCCATAAATTAC
Found at i:26912953 original size:57 final size:58
Alignment explanation
Indices: 26912822--26913071 Score: 194
Period size: 57 Copynumber: 4.3 Consensus size: 58
26912812 AACTTTCTAT
* **
26912822 AAATTA-CATTTTGACCCCTAAACTTTTTCAAAATT--ATGTTTTAACCCTAAAACTTTT-CCA
1 AAATTACCATTTT-ACCCCTAAAC-TTTCCAAAATTCCAT-TTTT-A-CCTCCAA-TTTTACCA
* * * *
26912882 AAATTA-CATTTTTACCTCTAAATTTTCCATAATTCCATTTTTACCT-CGATTTTACCA
1 AAATTACCA-TTTTACCCCTAAACTTTCCAAAATTCCATTTTTACCTCCAATTTTACCA
* * *
26912939 AAATTACCATTTTACCCCTAAACTTTCTAAAATTCCATTTTTGCCTCCAATTTCACCA
1 AAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTACCTCCAATTTTACCA
*** * * **
26912997 AAATTACCA-TTTACCCCCGTACTTTCCAAAATCCCGTTTTTGACCT--AAGTTCGACCA
1 AAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTT-ACCTCCAA-TTTTACCA
*
26913054 AAATTACCATTTTGCCCC
1 AAATTACCATTTTACCCC
26913072 CGGGTATCCA
Statistics
Matches: 158, Mismatches: 23, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
56 6 0.04
57 83 0.53
58 33 0.21
59 10 0.06
60 20 0.13
61 6 0.04
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (58 bp):
AAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTACCTCCAATTTTACCA
Found at i:26914143 original size:25 final size:25
Alignment explanation
Indices: 26914110--26914164 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
26914100 TTTTTCTTTG
26914110 AAATATAAAACATTAAAAA-AAATAT
1 AAATAT-AAACATTAAAAATAAATAT
* * *
26914135 AAATTTAAACTTTAAAAATATATAT
1 AAATATAAACATTAAAAATAAATAT
26914160 AAATA
1 AAATA
26914165 AAAAAATTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (25 bp):
AAATATAAACATTAAAAATAAATAT
Found at i:26914149 original size:24 final size:25
Alignment explanation
Indices: 26914117--26914163 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
26914107 TTGAAATATA
26914117 AAACATTAAAAA-AAATATAAATTT
1 AAACATTAAAAATAAATATAAATTT
* *
26914141 AAACTTTAAAAATATATATAAAT
1 AAACATTAAAAATAAATATAAAT
26914164 AAAAAAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (25 bp):
AAACATTAAAAATAAATATAAATTT
Found at i:26916420 original size:31 final size:30
Alignment explanation
Indices: 26916356--26916442 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
26916346 ATTTTTTTAA
26916356 ATGTGTATAATTGAATCAAAATAAAATTTC
1 ATGTGTATAATTGAATCAAAATAAAATTTC
* * * *
26916386 ATGTATATATTTGAATCATAATCAAAGTTTC
1 ATGTGTATAATTGAATCAAAAT-AAAATTTC
* *
26916417 ATGTGTATACTT-ACATCAAATTAAAA
1 ATGTGTATAATTGA-ATCAAAATAAAA
26916443 ATTATGTATC
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
30 23 0.50
31 23 0.50
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (30 bp):
ATGTGTATAATTGAATCAAAATAAAATTTC
Found at i:26918349 original size:21 final size:19
Alignment explanation
Indices: 26918325--26918364 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
26918315 TTGAATATGA
26918325 ATTTAAAAAATTTGATATAAT
1 ATTT-AAAAATTT-ATATAAT
*
26918346 ATTTTAAAATTTATATAAT
1 ATTTAAAAATTTATATAAT
26918365 TAGCATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 7 0.39
21 4 0.22
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
ATTTAAAAATTTATATAAT
Found at i:26923911 original size:16 final size:15
Alignment explanation
Indices: 26923890--26923927 Score: 60
Period size: 14 Copynumber: 2.5 Consensus size: 15
26923880 TATTCATTTA
26923890 AATTTTATATCAAAAT
1 AATTTT-TATCAAAAT
26923906 AA-TTTTATCAAAAT
1 AATTTTTATCAAAAT
26923920 AATTTTTA
1 AATTTTTA
26923928 AAAGTAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 11 0.52
15 8 0.38
16 2 0.10
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTTTTATCAAAAT
Found at i:26932371 original size:19 final size:19
Alignment explanation
Indices: 26932349--26932385 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26932339 ATTGTCACCA
*
26932349 ATCGTAATCAAATTTGTTT
1 ATCGTAATCAAAATTGTTT
26932368 ATCGTAATCAAAATTGTT
1 ATCGTAATCAAAATTGTT
26932386 ATTAACTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (19 bp):
ATCGTAATCAAAATTGTTT
Found at i:26932975 original size:27 final size:28
Alignment explanation
Indices: 26932936--26932990 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
26932926 GGTTGGATAG
*
26932936 GAGATGAGTAAAAGTTTTAGGAGAAAAT
1 GAGATGAGTAAAAGTTTTAGGAAAAAAT
*
26932964 GAGA-GAGTAAAAGTTTTGGGAAAAAAT
1 GAGATGAGTAAAAGTTTTAGGAAAAAAT
26932991 AAAGAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (28 bp):
GAGATGAGTAAAAGTTTTAGGAAAAAAT
Found at i:26933205 original size:28 final size:28
Alignment explanation
Indices: 26933148--26933207 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
26933138 GAGTAAAAGT
*
26933148 TTTGGGGAAAAAGTAAAAATGTTTGGAG
1 TTTGGGGAAAAAGTAAAAATGTTTAGAG
*
26933176 TTTGGGGTAAAAATGT-AAAAT-TTTATAG
1 TTTGGGG-AAAAA-GTAAAAATGTTTAGAG
26933204 TTTG
1 TTTG
26933208 ATATTCGGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 16 0.57
29 10 0.36
30 2 0.07
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (28 bp):
TTTGGGGAAAAAGTAAAAATGTTTAGAG
Found at i:26935155 original size:5 final size:5
Alignment explanation
Indices: 26935147--26935174 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
26935137 TTTAATCCAA
26935147 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
26935175 TGCCCCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:26935537 original size:37 final size:38
Alignment explanation
Indices: 26935476--26935557 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 38
26935466 TGTTCTTCTT
* * * *
26935476 TTTA-TATTTATTTATTGTCCTTTATTCTAT-TTACTA
1 TTTATTATTTATTCATTGTCATTTATTCTATCCTACCA
* *
26935512 TTTATTATTTATTCATTTTCATTTATTTTATCCTACCA
1 TTTATTATTTATTCATTGTCATTTATTCTATCCTACCA
26935550 TTTATTAT
1 TTTATTAT
26935558 GCCATTATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
36 4 0.11
37 22 0.58
38 12 0.32
ACGTcount: A:0.23, C:0.12, G:0.01, T:0.63
Consensus pattern (38 bp):
TTTATTATTTATTCATTGTCATTTATTCTATCCTACCA
Found at i:26943529 original size:78 final size:80
Alignment explanation
Indices: 26943386--26943545 Score: 263
Period size: 78 Copynumber: 2.0 Consensus size: 80
26943376 GGTTGTAAAA
26943386 ATGAAGGATTTGGATTTGAAACAGAAGAAAGAAAGTGCAAAGCAAATAGTAAACAAGGAACAGTA
1 ATGAAGGATTTGGATTTGAAAC--AAGAAAGAAAGTGCAAAGCAAATAGTAAACAAGGAACAGTA
26943451 GAACGATTGGATGAAAG
64 GAACGATTGGATGAAAG
*
26943468 ATGAAGGATTTGGATTTGAAAC-AG-AAGAAAGTGCAAAGGAAACTA-TAAACAAGGAACAGTAG
1 ATGAAGGATTTGGATTTGAAACAAGAAAGAAAGTGCAAAGCAAA-TAGTAAACAAGGAACAGTAG
26943530 AACGATTGGATGAAAG
65 AACGATTGGATGAAAG
26943546 GGGAAGGCTG
Statistics
Matches: 76, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
78 50 0.66
79 4 0.05
82 22 0.29
ACGTcount: A:0.48, C:0.07, G:0.27, T:0.17
Consensus pattern (80 bp):
ATGAAGGATTTGGATTTGAAACAAGAAAGAAAGTGCAAAGCAAATAGTAAACAAGGAACAGTAGA
ACGATTGGATGAAAG
Found at i:26943986 original size:23 final size:22
Alignment explanation
Indices: 26943959--26944001 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
26943949 TTATTTAGAC
26943959 AAATACTCATATTTATATAATTA
1 AAATACTCATATTT-TATAATTA
*
26943982 AAATATTCATATTTTATAAT
1 AAATACTCATATTTTATAAT
26944002 AGGTTGGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATACTCATATTTTATAATTA
Found at i:26944522 original size:21 final size:21
Alignment explanation
Indices: 26944484--26944528 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
26944474 AATATGTATG
26944484 TTTAATTAAAATTATAAT-AT
1 TTTAATTAAAATTATAATAAT
26944504 TTTATATTAAAA-TATTAATAAT
1 TTTA-ATTAAAATTA-TAATAAT
26944526 TTT
1 TTT
26944529 TAATATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.27
21 11 0.50
22 5 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTAATTAAAATTATAATAAT
Found at i:26947950 original size:33 final size:34
Alignment explanation
Indices: 26947906--26947980 Score: 93
Period size: 33 Copynumber: 2.2 Consensus size: 34
26947896 TACCAACTTT
26947906 AAAAAAATGTCAAATTT-AGGTACCAAATTA-A-A
1 AAAAAAATGTCAAATTTGA-GTACCAAATTAGACA
* *
26947938 AAAAAAAGTGTCAAGTTTGAGTATCAAATTAGACA
1 AAAAAAA-TGTCAAATTTGAGTACCAAATTAGACA
26947973 AAAAAAAT
1 AAAAAAAT
26947981 TTAGATACCA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
32 7 0.19
33 19 0.51
34 3 0.08
35 8 0.22
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.24
Consensus pattern (34 bp):
AAAAAAATGTCAAATTTGAGTACCAAATTAGACA
Found at i:26948002 original size:27 final size:27
Alignment explanation
Indices: 26947917--26948020 Score: 66
Period size: 27 Copynumber: 3.6 Consensus size: 27
26947907 AAAAAATGTC
*
26947917 AAATTTAGGTACCAAATTAAAAAAAAA
1 AAATTTAGATACCAAATTAAAAAAAAA
* * *
26947944 AGTGTCAAGTTT-GAGTATCAAATTAGACAAAAA
1 A-----AA-TTTAGA-TACCAAATTAAAAAAAAA
*
26947977 AAATTTAGATACCAAATTAAAAAAAAT
1 AAATTTAGATACCAAATTAAAAAAAAA
* * *
26948004 CAATTCAGATACTAAAT
1 AAATTTAGATACCAAAT
26948021 ATTATATTAA
Statistics
Matches: 58, Mismatches: 11, Indels: 16
0.68 0.13 0.19
Matches are distributed among these distances:
27 32 0.55
28 4 0.07
32 3 0.05
33 19 0.33
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.26
Consensus pattern (27 bp):
AAATTTAGATACCAAATTAAAAAAAAA
Found at i:26948126 original size:17 final size:19
Alignment explanation
Indices: 26948090--26948128 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
26948080 ATTTAGTAAT
*
26948090 TTTGTATTACTATTATTTA
1 TTTGTATTACTATAATTTA
26948109 TTTGT-TTACT-TAATTTA
1 TTTGTATTACTATAATTTA
26948126 TTT
1 TTT
26948129 ATCACCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 5 0.26
19 5 0.26
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (19 bp):
TTTGTATTACTATAATTTA
Found at i:26948297 original size:22 final size:22
Alignment explanation
Indices: 26948272--26948318 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
26948262 TACATTAATT
26948272 TTTATTT-AAAATATTTAATGAA
1 TTTATTTAAAAATA-TTAATGAA
26948294 TTTATTTAAAAATCATTAATGAA
1 TTTATTTAAAAAT-ATTAATGAA
26948317 TT
1 TT
26948319 AAAAAATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 7 0.30
23 15 0.65
24 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (22 bp):
TTTATTTAAAAATATTAATGAA
Found at i:26948312 original size:23 final size:22
Alignment explanation
Indices: 26948272--26948318 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
26948262 TACATTAATT
26948272 TTTATTTAAAATATTTAATGAA
1 TTTATTTAAAATATTTAATGAA
26948294 TTTATTTAAAA-ATCATTAATGAA
1 TTTATTTAAAATAT--TTAATGAA
26948317 TT
1 TT
26948319 AAAAAATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 2 0.09
22 11 0.48
23 10 0.43
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (22 bp):
TTTATTTAAAATATTTAATGAA
Found at i:26952230 original size:30 final size:30
Alignment explanation
Indices: 26952189--26952247 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
26952179 TTCAACTCTT
*
26952189 TTATCTTTTAGAAATTTTAATAATATTTTA
1 TTATATTTTAGAAATTTTAATAATATTTTA
*
26952219 TTATATTTTAGAAATTTTATTAATATTTT
1 TTATATTTTAGAAATTTTAATAATATTTT
26952248 TATTGGTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (30 bp):
TTATATTTTAGAAATTTTAATAATATTTTA
Found at i:26964794 original size:25 final size:27
Alignment explanation
Indices: 26964748--26964799 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
26964738 TTTGTAACTG
*
26964748 TATTGATTTCTCCAAAATGGGTTCGTA
1 TATTGATTTCTCCAAAAGGGGTTCGTA
*
26964775 TATTGATTT-T-CGAAAGGGGTTCGTA
1 TATTGATTTCTCCAAAAGGGGTTCGTA
26964800 ACCTTTACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 13 0.57
26 1 0.04
27 9 0.39
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (27 bp):
TATTGATTTCTCCAAAAGGGGTTCGTA
Found at i:26965233 original size:17 final size:17
Alignment explanation
Indices: 26965211--26965249 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26965201 TCATTGGGTT
* *
26965211 TTTAATTTTATATTAAG
1 TTTAATATTATATTAAA
*
26965228 TTTAATATTATTTTAAA
1 TTTAATATTATATTAAA
26965245 TTTAA
1 TTTAA
26965250 AGTAAATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTAATATTATATTAAA
Found at i:26965259 original size:17 final size:17
Alignment explanation
Indices: 26965239--26965299 Score: 68
Period size: 17 Copynumber: 3.4 Consensus size: 17
26965229 TTAATATTAT
26965239 TTTAAATTTAAAGTAAA
1 TTTAAATTTAAAGTAAA
26965256 TTTAAATTTAAAATAGATAAA
1 TTTAAATTT--AA-AG-TAAA
*
26965277 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAGTAAA
*
26965294 CTTAAA
1 TTTAAA
26965300 ACCAATTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
17 18 0.47
18 1 0.03
19 4 0.11
20 2 0.05
21 13 0.34
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (17 bp):
TTTAAATTTAAAGTAAA
Found at i:26965278 original size:21 final size:21
Alignment explanation
Indices: 26965252--26965291 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
26965242 AAATTTAAAG
26965252 TAAATTTAAATTTAAAATAGA
1 TAAATTTAAATTTAAAATAGA
26965273 TAAATTTAAATTTAAAATA
1 TAAATTTAAATTTAAAATA
26965292 AACTTAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (21 bp):
TAAATTTAAATTTAAAATAGA
Found at i:26966726 original size:59 final size:59
Alignment explanation
Indices: 26966555--26966844 Score: 304
Period size: 59 Copynumber: 4.9 Consensus size: 59
26966545 GGAGGTCCCT
* * *
26966555 AAACTATCCAAAAATTATATTTTGACCC-CTAAACTTTTCC-AAAATTCCATTTTTAACCTCA
1 AAACT-TCCAAAAATTATATTTTTACCCTC-AAAC--TTCCAAAAATTTCATTTTTAACCCCA
* * *
26966616 AAACTTCCAAAAATTATATTTTTACCCTTCAAACTTCTAAAAA-TTCAATTTTTGACCCCG
1 AAACTTCCAAAAATTATATTTTTACCC-TCAAACTTCCAAAAATTTC-ATTTTTAACCCCA
* * * * *
26966676 AAACTTCCAAAAATTACA-TTTTACCCCCCAAACTTCGAAAAATTTCATTTTTAACCTCG
1 AAACTTCCAAAAATTATATTTTTA-CCCTCAAACTTCCAAAAATTTCATTTTTAACCCCA
* * * *
26966735 AAACTTCCAAAAATTATATTTTTACTCTCGAACTTCCAAAAA-CTC-TATTTTAACCCTA
1 AAACTTCCAAAAATTATATTTTTACCCTCAAACTTCCAAAAATTTCAT-TTTTAACCCCA
* * *
26966793 AAACTTCCAAAAATTACATTTTTACCCTCGAACTTCCAAAAATTCCATTTTT
1 AAACTTCCAAAAATTATATTTTTACCCTCAAACTTCCAAAAATTTCATTTTT
26966845 GAGATCAAAA
Statistics
Matches: 195, Mismatches: 24, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
57 1 0.01
58 50 0.26
59 70 0.36
60 64 0.33
61 9 0.05
62 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.36
Consensus pattern (59 bp):
AAACTTCCAAAAATTATATTTTTACCCTCAAACTTCCAAAAATTTCATTTTTAACCCCA
Found at i:26966841 original size:29 final size:29
Alignment explanation
Indices: 26966551--26966844 Score: 269
Period size: 29 Copynumber: 10.0 Consensus size: 29
26966541 CCCTGGAGGT
* *
26966551 CCCT-AAACTATCCAAAAATTATATTTTGA
1 CCCTCAAACT-TCCAAAAATTACATTTTTA
*
26966580 CCC-CTAAACTTTTCC-AAAATTCCATTTTTA
1 CCCTC-AAAC--TTCCAAAAATTACATTTTTA
* *
26966610 ACCTCAAAACTTCCAAAAATTATATTTTTA
1 CCCTC-AAACTTCCAAAAATTACATTTTTA
*
26966640 CCCTTCAAACTTCTAAAAATT-CAATTTTTGA
1 CCC-TCAAACTTCCAAAAATTAC-ATTTTT-A
26966671 CCC-CGAAACTTCCAAAAATTACA-TTTTA
1 CCCTC-AAACTTCCAAAAATTACATTTTTA
* * *
26966699 CCCCCCAAACTTCGAAAAATTTCATTTTTA
1 -CCCTCAAACTTCCAAAAATTACATTTTTA
* *
26966729 ACCTCGAAACTTCCAAAAATTATATTTTTA
1 CCCTC-AAACTTCCAAAAATTACATTTTTA
* * * *
26966759 CTCTCGAACTTCCAAAAACT-CTATTTTAA
1 CCCTCAAACTTCCAAAAATTAC-ATTTTTA
*
26966788 CCCTAAAACTTCCAAAAATTACATTTTTA
1 CCCTCAAACTTCCAAAAATTACATTTTTA
* *
26966817 CCCTCGAACTTCCAAAAATTCCATTTTT
1 CCCTCAAACTTCCAAAAATTACATTTTT
26966845 GAGATCAAAA
Statistics
Matches: 216, Mismatches: 32, Indels: 34
0.77 0.11 0.12
Matches are distributed among these distances:
28 1 0.00
29 100 0.46
30 99 0.46
31 15 0.07
32 1 0.00
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.35
Consensus pattern (29 bp):
CCCTCAAACTTCCAAAAATTACATTTTTA
Found at i:26966922 original size:29 final size:30
Alignment explanation
Indices: 26966555--26966926 Score: 231
Period size: 30 Copynumber: 12.5 Consensus size: 30
26966545 GGAGGTCCCT
* *
26966555 AAACTATCCAAAAATTATA-TTTTGACCCCT
1 AAACT-TCCAAAAATTATATTTTTGACCTCG
** * *
26966585 AAACTTTTCC-AAAATTCCATTTTTAACCTCA
1 AAAC--TTCCAAAAATTATATTTTTGACCTCG
26966616 AAACTTCCAAAAATTATATTTTT-ACCCTTC-
1 AAACTTCCAAAAATTATATTTTTGA-CC-TCG
* *
26966646 AAACTTCTAAAAATTCA-ATTTTTGACCCCG
1 AAACTTCCAAAAATT-ATATTTTTGACCTCG
* * *
26966676 AAACTTCCAAAAATTACA-TTTT-ACCCCCC
1 AAACTTCCAAAAATTATATTTTTGA-CCTCG
* *
26966705 AAACTTCGAAAAATT-TCATTTTTAACCTCG
1 AAACTTCCAAAAATTAT-ATTTTTGACCTCG
26966735 AAACTTCCAAAAATTATATTTTT-ACTCTCG
1 AAACTTCCAAAAATTATATTTTTGAC-CTCG
* * * *
26966765 -AACTTCCAAAAACTCTA-TTTTAACC-CTA
1 AAACTTCCAAAAATTATATTTTTGACCTC-G
*
26966793 AAACTTCCAAAAATTACATTTTT-ACCCTCG
1 AAACTTCCAAAAATTATATTTTTGA-CCTCG
** ** *
26966823 -AACTTCCAAAAATTCCATTTTTGAGATCA
1 AAACTTCCAAAAATTATATTTTTGACCTCG
* * * *
26966852 AAACTTTCAAAATTTATCA-TTTTGCCCTTG
1 AAACTTCCAAAAATTAT-ATTTTTGACCTCG
*
26966882 -AA-TGTCAAAAAAATT-TATTTTTGACCTCG
1 AAACT-TC-CAAAAATTATATTTTTGACCTCG
*
26966911 AAACTTTCAAAAATTA
1 AAACTTCCAAAAATTA
26966927 CCCTTTTACC
Statistics
Matches: 268, Mismatches: 43, Indels: 62
0.72 0.12 0.17
Matches are distributed among these distances:
27 1 0.00
28 8 0.03
29 107 0.40
30 127 0.47
31 24 0.09
32 1 0.00
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.36
Consensus pattern (30 bp):
AAACTTCCAAAAATTATATTTTTGACCTCG
Found at i:26966970 original size:59 final size:57
Alignment explanation
Indices: 26966591--26967054 Score: 243
Period size: 59 Copynumber: 7.9 Consensus size: 57
26966581 CCCTAAACTT
* * * * *
26966591 TTCC-AAAATTCCATTTTTAACCTCAAAACTTCCAAAAATTA-TATTTTTACCCTTCAAA
1 TTCCAAAAATT-CATTTTTGACCTCGAAACTTTCAAAAATTACCA-TTTTACCCTT-GAA
* * * ***
26966649 CTTCTAAAAATTCAATTTTTGACCCCGAAACTTCCAAAAATTA-CATTTTACCCCCCAAA
1 -TTCCAAAAATTC-ATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTA-CCCTTGAA
* * * * * *
26966708 CTTCGAAAAATTTCATTTTTAACCTCGAAACTTCCAAAAATTA-TATTTTTACTCTCGAA
1 -TTCCAAAAA-TTCATTTTTGACCTCGAAACTTTCAAAAATTACCA-TTTTACCCTTGAA
* * * * *
26966767 CTTCCAAAAACTC-TATTTTAACC-CTAAAACTTCCAAAAATTA-CATTTTTACCCTCGAA
1 -TTCCAAAAATTCAT-TTTTGACCTC-GAAACTTTCAAAAATTACCA-TTTTACCCTTGAA
** * * * *
26966825 CTTCCAAAAATTCCATTTTTGAGATCAAAACTTTCAAAATTTATCATTTTGCCCTTGAA
1 -TTCCAAAAATT-CATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTACCCTTGAA
* * * *
26966884 TGTCAAAAAAATTTATTTTTGACCTCGAAACTTTCAAAAATTACCCTTTTACCCTTGGA
1 T-TC-CAAAAATTCATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTACCCTTGAA
* * * *
26966943 TATCCAAAGATTACATTTTTGATCTCG--ATTTTCCTAAAAATTATCATTTTAACCC--GAA
1 T-TCCAAAAATT-CATTTTTGACCTCGAAACTTT-C-AAAAATTACCATTTT-ACCCTTGAA
* ** *
26967001 TGTTCAAAAATTCTATTTTTGATCC-CG-ATTTTTCTAAAAATTATCATTTTACCC
1 T-TCCAAAAATTC-ATTTTTGA-CCTCGAAACTTTC-AAAAATTACCATTTTACCC
26967055 ACGGATGCCC
Statistics
Matches: 334, Mismatches: 51, Indels: 42
0.78 0.12 0.10
Matches are distributed among these distances:
57 11 0.03
58 97 0.29
59 167 0.50
60 59 0.18
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (57 bp):
TTCCAAAAATTCATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTACCCTTGAA
Found at i:26967011 original size:28 final size:29
Alignment explanation
Indices: 26966976--26967051 Score: 84
Period size: 28 Copynumber: 2.6 Consensus size: 29
26966966 CTCGATTTTC
26966976 CTAAAAATTATCATTTTAACCCGAATGTT
1 CTAAAAATTATCATTTTAACCCGAATGTT
* * * *
26967005 C-AAAAATTCT-ATTTTTGATCCCGATTTTT
1 CTAAAAATTATCA-TTTT-AACCCGAATGTT
26967034 CTAAAAATTATCATTTTA
1 CTAAAAATTATCATTTTA
26967052 CCCACGGATG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
27 1 0.03
28 12 0.32
29 12 0.32
30 12 0.32
31 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.43
Consensus pattern (29 bp):
CTAAAAATTATCATTTTAACCCGAATGTT
Found at i:26967030 original size:58 final size:59
Alignment explanation
Indices: 26966946--26967114 Score: 198
Period size: 58 Copynumber: 2.9 Consensus size: 59
26966936 CCTTGGATAT
* * * *
26966946 CCAAAGATTACATTTTTGATCTCGATTTTCCTAAAAATTATCATTTTAACC-CGAATGT
1 CCAAAAATTCCATTTTTGATCTCGATTTTTCTAAAAATTATCATTTTAACCACGAATGC
* * * * *
26967004 TCAAAAATTCTATTTTTGATCCCGATTTTTCTAAAAATTATCATTTTACCCACGGATGC
1 CCAAAAATTCCATTTTTGATCTCGATTTTTCTAAAAATTATCATTTTAACCACGAATGC
* * *
26967063 CCAAAAATTCCGTTTTTTATCTCGATTTTTTTCTAAAAGTTATCA-TTTAACC
1 CCAAAAATTCCATTTTTGATCTCGA--TTTTTCTAAAAATTATCATTTTAACC
26967115 TCCGGGTGTT
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
58 44 0.48
59 25 0.27
60 6 0.07
61 17 0.18
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.42
Consensus pattern (59 bp):
CCAAAAATTCCATTTTTGATCTCGATTTTTCTAAAAATTATCATTTTAACCACGAATGC
Found at i:26967042 original size:30 final size:31
Alignment explanation
Indices: 26966952--26967050 Score: 109
Period size: 29 Copynumber: 3.4 Consensus size: 31
26966942 ATATCCAAAG
* *
26966952 ATTA-CATTTTTGATCTCGATTTTCCTAAAA
1 ATTATCATTTTTGATCCCGATTTTTCTAAAA
* * *
26966982 ATTATCA-TTTT-AACCCGAATGTTC-AAAA
1 ATTATCATTTTTGATCCCGATTTTTCTAAAA
*
26967010 ATTCT-ATTTTTGATCCCGATTTTTCTAAAA
1 ATTATCATTTTTGATCCCGATTTTTCTAAAA
26967040 ATTATCATTTT
1 ATTATCATTTT
26967051 ACCCACGGAT
Statistics
Matches: 54, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
27 1 0.02
28 12 0.22
29 18 0.33
30 16 0.30
31 7 0.13
ACGTcount: A:0.31, C:0.16, G:0.06, T:0.46
Consensus pattern (31 bp):
ATTATCATTTTTGATCCCGATTTTTCTAAAA
Found at i:26967067 original size:117 final size:116
Alignment explanation
Indices: 26966890--26967114 Score: 258
Period size: 117 Copynumber: 1.9 Consensus size: 116
26966880 TGAATGTCAA
* ** * *
26966890 AAAAATTTATTTTTGACCTCGAAACTTTCAAAAATTACCCTTTTACCCTTGGATATCCAAAGATT
1 AAAAATTTATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTACCCACGGATACCCAAAAATT
26966955 ACATTTTTGATCTCGA-TTTTCCTAAAAATTATCATTTTAACCCGAATGTTC
66 ACATTTTTGATCTCGATTTTTCCTAAAAATTATCA-TTTAACCCGAATGTTC
** * *
26967006 AAAAATTCTATTTTTGATCC-CG-ATTTTTCTAAAAATTATCATTTTACCCACGGATGCCCAAAA
1 AAAAATT-TATTTTTGA-CCTCGAAACTTTC-AAAAATTACCATTTTACCCACGGATACCCAAAA
* * * * *
26967069 ATTCCGTTTTTTATCTCGATTTTTTTCTAAAAGTTATCATTTAACC
63 ATTACATTTTTGATCTCGA-TTTTTCCTAAAAATTATCATTTAACC
26967115 TCCGGGTGTT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
116 12 0.13
117 53 0.59
118 9 0.10
119 16 0.18
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.41
Consensus pattern (116 bp):
AAAAATTTATTTTTGACCTCGAAACTTTCAAAAATTACCATTTTACCCACGGATACCCAAAAATT
ACATTTTTGATCTCGATTTTTCCTAAAAATTATCATTTAACCCGAATGTTC
Found at i:26967214 original size:28 final size:29
Alignment explanation
Indices: 26967153--26967219 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
26967143 CTAAAACTTT
* *
26967153 TCCAAAATTACCATTTTTCCCCTCGAGAG
1 TCCAAAATTACCATTTTTACCCTCGAGAA
*
26967182 TCCAAAATTACCA-TTTTACCTTCG-GATA
1 TCCAAAATTACCATTTTTACCCTCGAGA-A
26967210 TCCAAGAATT
1 TCCAA-AATT
26967220 CTCGTTTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 2 0.06
28 14 0.42
29 17 0.52
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (29 bp):
TCCAAAATTACCATTTTTACCCTCGAGAA
Done.