Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50980411
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1700 characters in sequence are not A, C, G, or T
File 99 of 171
Found at i:32125560 original size:29 final size:30
Alignment explanation
Indices: 32125523--32125596 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 30
32125513 TTTGGACATC
*
32125523 GAGGGT-AAAATAGTAA-TTTTGGGAGTTTT
1 GAGGGTAAAAATAG-AATTTTTGGAAGTTTT
*
32125552 GAGGTTAAAAATAGAATTTTTGGAAG-TTT
1 GAGGGTAAAAATAGAATTTTTGGAAGTTTT
32125581 G-GGGTCAAAAAT-GAAT
1 GAGGGT-AAAAATAGAAT
32125597 GACCTGCCGT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
28 7 0.18
29 17 0.44
30 15 0.38
ACGTcount: A:0.36, C:0.01, G:0.28, T:0.34
Consensus pattern (30 bp):
GAGGGTAAAAATAGAATTTTTGGAAGTTTT
Found at i:32133648 original size:28 final size:28
Alignment explanation
Indices: 32133617--32133676 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
32133607 AAAATGAGGC
* *
32133617 TTTGGA-TGCTCGGGGGTAAAATGGTAAT
1 TTTGGACT-CTCGAGGGCAAAATGGTAAT
32133645 TTTGGACTCTCGAGGGCAAAATGGTAAT
1 TTTGGACTCTCGAGGGCAAAATGGTAAT
32133673 TTTG
1 TTTG
32133677 AGAAAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 28 0.97
29 1 0.03
ACGTcount: A:0.25, C:0.10, G:0.32, T:0.33
Consensus pattern (28 bp):
TTTGGACTCTCGAGGGCAAAATGGTAAT
Found at i:32133882 original size:118 final size:116
Alignment explanation
Indices: 32133656--32133914 Score: 283
Period size: 118 Copynumber: 2.2 Consensus size: 116
32133646 TTGGACTCTC
* * * * ** **
32133656 GAGGGCAAAATGGTAATTTTGAGAAAATTTAGGGTTAGAAATGATATTTTAGATTTTTGGGGGTA
1 GAGGGTAAAATGGTAATTTTGAGAAAACTTAGGGTTAAAAATGATATTTTAAACATTTAAGGGTA
* * *
32133721 AAACAGTAATTTTCGAAAGAATCGGGATCAAAATGAATCTTTTTGGATATCTA
66 AAACAGTAATTTTAGAAAGAATCAGGATCAAAATGAA-CTTTTTGGACATC-A
32133774 G-GGGTAAAATGGTAATTTT-AGGAAAAACTTAGGGTTAAAAATGATATTTTAAACATTTAAGGG
1 GAGGGTAAAATGGTAATTTTGA-G-AAAACTTAGGGTTAAAAATGATATTTTAAACATTTAAGGG
* * *
32133837 TAAAACGGTAATTTTTAGAAA-AATCAGGATCAAAAATAGGA-TTTTTGGACATCC
64 TAAAACAGTAA-TTTTAGAAAGAATCAGGATC-AAAAT-GAACTTTTTGGACATCA
* *
32133891 GAGGGTAAAATAGTAATTTCGAGA
1 GAGGGTAAAATGGTAATTTTGAGA
32133915 GTTTCGGGGT
Statistics
Matches: 118, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
116 1 0.01
117 20 0.17
118 81 0.69
119 14 0.12
120 2 0.02
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (116 bp):
GAGGGTAAAATGGTAATTTTGAGAAAACTTAGGGTTAAAAATGATATTTTAAACATTTAAGGGTA
AAACAGTAATTTTAGAAAGAATCAGGATCAAAATGAACTTTTTGGACATCA
Found at i:32133928 original size:58 final size:59
Alignment explanation
Indices: 32133833--32134106 Score: 208
Period size: 59 Copynumber: 4.7 Consensus size: 59
32133823 TAAACATTTA
** ** *
32133833 AGGGTAAAACGGTAATTTTTAGAAA-AATCAGGATCAAAAATAGG-ATTTTTGGACA-TCCG
1 AGGGTAAAAATGTAA-TTTTAGAAAGTTTCAGGGTCAAAAAT-GGAATTTTTGGA-AGTCCG
* * * *
32133892 AGGGT-AAAATAGTAA-TTTCGAGAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTCG
1 AGGGTAAAAAT-GTAATTTTAGAAAGTTTCAGGGTCAAAAATGGAATTTTTGGAAGTCCG
* * **
32133950 AGGGTAAAAATGTAATTTTAGAAAGTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTTG
1 AGGGTAAAAATGTAATTTTAGAAAGTTTCAGGGTCAAAAATGGAATTTTTGGAAGTCCG
* * * * **
32134009 AGGGTAAAAATGTAATTTTTAG-GAGTTTTAGGGTTAAAATAT--AATTTTTAGAAGTTTTG
1 AGGGTAAAAATGTAA-TTTTAGAAAGTTTCAGGGTCAAAA-ATGGAATTTTTGGAAG-TCCG
* *
32134068 -GGGTTAAAAATGTAATTTTTAG-AAGTTTTAAGGTCAAAA
1 AGGG-TAAAAATGTAA-TTTTAGAAAGTTTCAGGGTCAAAA
32134107 TGTTATTTTA
Statistics
Matches: 185, Mismatches: 20, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
57 9 0.05
58 50 0.27
59 118 0.64
60 8 0.04
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (59 bp):
AGGGTAAAAATGTAATTTTAGAAAGTTTCAGGGTCAAAAATGGAATTTTTGGAAGTCCG
Found at i:32133949 original size:29 final size:30
Alignment explanation
Indices: 32133914--32134145 Score: 226
Period size: 29 Copynumber: 7.9 Consensus size: 30
32133904 TAATTTCGAG
* * *
32133914 AGTTTCGGGGTCAAAAATGGAATTTTTGGA
1 AGTTTTGGGGTTAAAAATGTAATTTTTGGA
* * *
32133944 AG-TTCGAGGG-TAAAAATGTAATTTTAGAA
1 AGTTTTG-GGGTTAAAAATGTAATTTTTGGA
* *
32133973 AGTTTTAGGGTTAAAAATGGAATTTTTGGA
1 AGTTTTGGGGTTAAAAATGTAATTTTTGGA
32134003 AG-TTTGAGGG-TAAAAATGTAATTTTTAGG-
1 AGTTTTG-GGGTTAAAAATGTAATTTTT-GGA
* * *
32134032 AGTTTTAGGGTT-AAAATATAATTTTTAGA
1 AGTTTTGGGGTTAAAAATGTAATTTTTGGA
*
32134061 AGTTTTGGGGTTAAAAATGTAATTTTTAGA
1 AGTTTTGGGGTTAAAAATGTAATTTTTGGA
** * * **
32134091 AGTTTTAAGG-TCAAAATGTTATTTTAAGA
1 AGTTTTGGGGTTAAAAATGTAATTTTTGGA
32134120 AGTTTTGGGGTTAAAAATGTAATTTT
1 AGTTTTGGGGTTAAAAATGTAATTTT
32134146 GAAGAAGTTC
Statistics
Matches: 167, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
28 1 0.01
29 95 0.57
30 71 0.43
ACGTcount: A:0.35, C:0.02, G:0.24, T:0.40
Consensus pattern (30 bp):
AGTTTTGGGGTTAAAAATGTAATTTTTGGA
Found at i:32133993 original size:59 final size:58
Alignment explanation
Indices: 32133891--32134149 Score: 255
Period size: 59 Copynumber: 4.4 Consensus size: 58
32133881 TTGGACATCC
* ** * *
32133891 GAGGGT-AAAATAGTAA-TTTCGAGAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTC
1 GAGGGTAAAAAT-GTAATTTTAGA-AGTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTT
32133949 GAGGGTAAAAATGTAATTTTAGAAAGTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTT
1 GAGGGTAAAAATGTAATTTTAG-AAGTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTT
* *
32134008 GAGGGTAAAAATGTAATTTTTAGGAGTTTTAGGGTTAAAATAT--AATTTTTAGAAGTTTT
1 GAGGGTAAAAATGTAA-TTTTAGAAGTTTTAGGGTTAAAA-ATGGAATTTTTGGAAG-TTT
* * ** **
32134067 G-GGGTTAAAAATGTAATTTTTAGAAGTTTTAAGG-TCAAAATGTTATTTTAAGAAGTTTT
1 GAGGG-TAAAAATGTAA-TTTTAGAAGTTTTAGGGTTAAAAATGGAATTTTTGGAAG-TTT
32134126 G-GGGTTAAAAATGTAATTTT-GAAG
1 GAGGG-TAAAAATGTAATTTTAGAAG
32134150 AAGTTCGGGG
Statistics
Matches: 180, Mismatches: 12, Indels: 19
0.85 0.06 0.09
Matches are distributed among these distances:
57 6 0.03
58 32 0.18
59 133 0.74
60 9 0.05
ACGTcount: A:0.36, C:0.02, G:0.25, T:0.38
Consensus pattern (58 bp):
GAGGGTAAAAATGTAATTTTAGAAGTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTT
Found at i:32134086 original size:88 final size:88
Alignment explanation
Indices: 32133921--32134154 Score: 265
Period size: 88 Copynumber: 2.6 Consensus size: 88
32133911 GAGAGTTTCG
* ** *
32133921 GGGTCAAAAATGGAATTTTT-GGAAGTTCGAGGGTAAAAATGTAA-TTTTAGAAAGTTTTAGGGT
1 GGGT-AAAAATGTAATTTTTAGG-AGTTTTAGGGTTAAAATGTAATTTTTAG-AAGTTTTAGGGT
*
32133984 TAAAAATGGAATTTTTGGAAGTTTGA
63 TAAAAATGGAATTTTTAGAAGTTTGA
* *
32134010 GGGTAAAAATGTAATTTTTAGGAGTTTTAGGGTTAAAATATAATTTTTAGAAGTTTTGGGGTTAA
1 GGGTAAAAATGTAATTTTTAGGAGTTTTAGGGTTAAAATGTAATTTTTAGAAGTTTTAGGGTTAA
* *
32134075 AAATGTAATTTTTAGAAGTTTTA
66 AAATGGAATTTTTAGAAGTTTGA
* * * * * * *
32134098 AGGTCAAAATGTTATTTTAAGAAGTTTTGGGGTTAAAAATGTAATTTTGAAGAAGTT
1 GGGTAAAAATGTAATTTTTAGGAGTTTTAGGGTT-AAAATGTAATTTT-TAGAAGTT
32134155 CGGGGGTCAA
Statistics
Matches: 124, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
88 93 0.75
89 24 0.19
90 7 0.06
ACGTcount: A:0.36, C:0.01, G:0.24, T:0.39
Consensus pattern (88 bp):
GGGTAAAAATGTAATTTTTAGGAGTTTTAGGGTTAAAATGTAATTTTTAGAAGTTTTAGGGTTAA
AAATGGAATTTTTAGAAGTTTGA
Found at i:32134167 original size:30 final size:30
Alignment explanation
Indices: 32133893--32134167 Score: 145
Period size: 29 Copynumber: 9.3 Consensus size: 30
32133883 GGACATCCGA
**
32133893 GGGT-AAAATAGTAATTTCGAG-AGTTTC-G
1 GGGTCAAAAT-GTAATTTTAAGAAGTTTCGG
* ** *
32133921 GGGTCAAAAATGGAATTTTTGGAAG-TTCGA
1 GGGTC-AAAATGTAATTTTAAGAAGTTTCGG
* **
32133951 GGGTAAAAATGTAATTTT-AGAAAGTTTTAG
1 GGGTCAAAATGTAATTTTAAG-AAGTTTCGG
* * * ** *
32133981 GGTTAAAAATGGAATTTTTGGAAGTTT-GA
1 GGGTCAAAATGTAATTTTAAGAAGTTTCGG
* * * **
32134010 GGGTAAAAATGTAATTTTTAGGAGTTT-TA
1 GGGTCAAAATGTAATTTTAAGAAGTTTCGG
* * * *
32134039 GGGTTAAAATATAATTTTTAGAAGTTTTGG
1 GGGTCAAAATGTAATTTTAAGAAGTTTCGG
* * * **
32134069 GGTTAAAAATGTAATTTTTAGAAGTTT-TA
1 GGGTCAAAATGTAATTTTAAGAAGTTTCGG
* * *
32134098 AGGTCAAAATGTTATTTTAAGAAGTTTTGG
1 GGGTCAAAATGTAATTTTAAGAAGTTTCGG
* *
32134128 GGTTAAAAATGTAATTTTGAAGAAG-TTCGG
1 GGGTCAAAATGTAATTTT-AAGAAGTTTCGG
32134158 GGGTCAAAAT
1 GGGTCAAAAT
32134168 ACAATTTCTA
Statistics
Matches: 192, Mismatches: 45, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
28 5 0.03
29 95 0.49
30 85 0.44
31 7 0.04
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.37
Consensus pattern (30 bp):
GGGTCAAAATGTAATTTTAAGAAGTTTCGG
Found at i:32136191 original size:6 final size:6
Alignment explanation
Indices: 32136182--32136258 Score: 70
Period size: 6 Copynumber: 13.0 Consensus size: 6
32136172 GTTTTTTAGT
* *
32136182 TTTAAA TTTAAAA ATT-A- TTTCAAA TTTAAA -CTAAA TTTAAA TTTAAA
1 TTTAAA TTT-AAA TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA
** *
32136229 TTTAAA AATGAA TTTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
32136259 GTAGATTTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
4 2 0.04
5 5 0.09
6 41 0.73
7 8 0.14
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (6 bp):
TTTAAA
Found at i:32136248 original size:41 final size:40
Alignment explanation
Indices: 32136182--32136287 Score: 115
Period size: 41 Copynumber: 2.6 Consensus size: 40
32136172 GTTTTTTAGT
* *
32136182 TTTAAATTTAAAAATTATTTCAAATTTAAA-CTAAATTTAAA
1 TTTAAATTTAAAAATAATTT-AAATTTAAATCTAAA-GTAAA
* *
32136223 TTTAAATTTAAAAATGAATTTAAATTTAAATTTAAAGTAGA
1 TTTAAATTTAAAAAT-AATTTAAATTTAAATCTAAAGTAAA
* *
32136264 TTTAATTTTAGAAATAAATTTAAA
1 TTTAAATTTAAAAAT-AATTTAAA
32136288 ATCCATTTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 48 0.86
42 8 0.14
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (40 bp):
TTTAAATTTAAAAATAATTTAAATTTAAATCTAAAGTAAA
Found at i:32149234 original size:22 final size:22
Alignment explanation
Indices: 32149204--32149249 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
32149194 TCACTTGAAT
*
32149204 AACTTTCAAAATACATCAAAAA
1 AACTCTCAAAATACATCAAAAA
* **
32149226 AACTCTCAAACTATTTCAAAAA
1 AACTCTCAAAATACATCAAAAA
32149248 AA
1 AA
32149250 AAATTAAGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.24
Consensus pattern (22 bp):
AACTCTCAAAATACATCAAAAA
Found at i:32149549 original size:19 final size:18
Alignment explanation
Indices: 32149490--32149550 Score: 72
Period size: 19 Copynumber: 3.4 Consensus size: 18
32149480 TGACATGAAG
32149490 TAAAAAATT-ATAAAAA-
1 TAAAAAATTAATAAAAAT
32149506 TAAAAAATTAATAAAAATT
1 TAAAAAATTAATAAAAA-T
* *
32149525 TAAAAATTTATTAAAAAT
1 TAAAAAATTAATAAAAAT
32149543 TAGAAAAA
1 TA-AAAAA
32149551 AATATAAGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
16 9 0.24
17 7 0.18
18 3 0.08
19 19 0.50
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
TAAAAAATTAATAAAAAT
Found at i:32153523 original size:141 final size:140
Alignment explanation
Indices: 32153266--32153781 Score: 341
Period size: 134 Copynumber: 3.8 Consensus size: 140
32153256 AATTGCAAAG
* ** *
32153266 CCTAAATGTGAATTGTATGCTATTATTGAAATTCATGATCACCATGTGAAAACAAGACATCATGC
1 CCTAAATGTGAATTGTATGCTATTATTGAAATTCATGAACACCATACGAAAACAAGACATAATGC
* * *
32153331 ATGTTTATCAAACATGAAAACAGTAGAACAAACACAACAGAATATGTTTAATTACAATTGAGTTA
66 ATGTCTATCAAACACGAAAACAGTAGAACAAACACAACAGAAAATGTTTAATTACAATTGAGTTA
32153396 AATTTTGAAA
131 AATTTTGAAA
* * *
32153406 CCTAAATGTGAATTGTATATGCTATTATTGAATTTCATGAACACCCTACGAAAACAAGTCA-AAT
1 CCTAAATGTGAATTG--TATGCTATTATTGAAATTCATGAACACCATACGAAAACAAGACATAAT
* ** * * * * *
32153470 GCATGTCTATTAAACACGAATGCGGTATAATAAATACAACAGAAAATG--T--TT--AATTGAGC
64 GCATGTCTATCAAACACGAAAACAGTAGAACAAACACAACAGAAAATGTTTAATTACAATTGAGT
32153529 TAAATTTCT-AAA
129 TAAATTT-TGAAA
* ** * * * * * * * *
32153541 TCTAAATGCAAAGTGTATGTGCCATT-TCAGAAATTCATGAACACCATATGGACACAAGTCAAAA
1 CCTAAATGTGAATTGTA--TGCTATTAT-TGAAATTCATGAACACCATACGAAAACAAGACATAA
* * * * *
32153605 TGCATGTTTATTAAACACAAAAACAGTATAAC--ACA-ATAC-G----T-TTTAAGTACAATTGA
63 TGCATGTCTATCAAACACGAAAACAGTAGAACAAACACA-ACAGAAAATGTTTAATTACAATTGA
* **
32153661 GCTAAATTTCAAAA
127 GTTAAATTTTGAAA
* * ** ** **
32153675 CCTAAATGTGAATTATATATGGC-ATTACTGAAATTCATGAACACCATATAAAAACTTGACATGG
1 CCTAAATGTGAA-T-TGTAT-GCTATTATTGAAATTCATGAACACCATACGAAAACAAGACATAA
** * * * * *
32153739 CACATGTTTATCAAGCATGAAAACAGTATAATAAACACAACAG
63 TGCATGTCTATCAAACACGAAAACAGTAGAACAAACACAACAG
32153782 TGTACACCTA
Statistics
Matches: 292, Mismatches: 61, Indels: 49
0.73 0.15 0.12
Matches are distributed among these distances:
129 1 0.00
130 1 0.00
132 1 0.00
133 4 0.01
134 87 0.30
135 63 0.22
136 37 0.13
137 4 0.01
139 1 0.00
140 15 0.05
141 40 0.14
142 38 0.13
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.29
Consensus pattern (140 bp):
CCTAAATGTGAATTGTATGCTATTATTGAAATTCATGAACACCATACGAAAACAAGACATAATGC
ATGTCTATCAAACACGAAAACAGTAGAACAAACACAACAGAAAATGTTTAATTACAATTGAGTTA
AATTTTGAAA
Found at i:32159063 original size:161 final size:162
Alignment explanation
Indices: 32158773--32159095 Score: 465
Period size: 161 Copynumber: 2.0 Consensus size: 162
32158763 TGAGAGATCT
* *
32158773 CAAGTCCTCGTCTAGATAACATTAATGGTTCCCAAGATTCATCTTCAACTGATGCCTCGATCATG
1 CAAGTCCTCGTCTAGATAACATTAATGGTTCCCAAAATCCATCTTCAACTGATGCCTCGATCATG
* * * *
32158838 TGGTCCAACTTCTCCATCTCTAGAATAAAAAGATACAAGGAGAACGAGTCCCCTTACTTAACTCC
66 TGGCCCAACTTCTCCATCCCTAAAATAAAAAGATACAAGGAGAACGAGTCCCCTTACCTAACTCC
* *
32158903 TTTAGAAGGAAAAAATTCCTCCAACAGAATCC
131 TCTAAAAGGAAAAAATTCCTCCAACAGAATCC
*
32158935 CAAGT-CTCTGTCTAGATAACA-TAATGGTTCCCAAAATCCATCTTTAACTGATGCCTCGATCAT
1 CAAGTCCTC-GTCTAGATAACATTAATGGTTCCCAAAATCCATCTTCAACTGATGCCTCGATCAT
* ** *
32158998 GTGGCCCAACTTCTCCATCCCTAAAATAAAAAGATTCGGGGAG-A-GTAGGTCCCCTTGCCTAAC
65 GTGGCCCAACTTCTCCATCCCTAAAATAAAAAGATACAAGGAGAACG-A-GTCCCCTTACCTAAC
*
32159061 TCCTCTAAAAGGAAAAAATTCCTCCGACAGAATCC
128 TCCTCTAAAAGGAAAAAATTCCTCCAACAGAATCC
32159096 TATTCCAAAT
Statistics
Matches: 144, Mismatches: 14, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
159 1 0.01
160 2 0.01
161 124 0.86
162 17 0.12
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.26
Consensus pattern (162 bp):
CAAGTCCTCGTCTAGATAACATTAATGGTTCCCAAAATCCATCTTCAACTGATGCCTCGATCATG
TGGCCCAACTTCTCCATCCCTAAAATAAAAAGATACAAGGAGAACGAGTCCCCTTACCTAACTCC
TCTAAAAGGAAAAAATTCCTCCAACAGAATCC
Found at i:32160421 original size:120 final size:120
Alignment explanation
Indices: 32160208--32160447 Score: 426
Period size: 120 Copynumber: 2.0 Consensus size: 120
32160198 TAAACTCAGG
**
32160208 ATGTTGCAACCAACTATGTAACATCCCCACTTAAAAAAATCATTATTGAGTTAAAGACTAAATTG
1 ATGTTGCAACCAACTATAAAACATCCCCACTTAAAAAAATCATTATTGAGTTAAAGACTAAATTG
* *
32160273 AACAAGTTGGAAAAGTATAGGAACTAAAGTACAAATATTCTATTTTTATTTTGAT
66 AACAAGTTGGAAAAGTATAGGAACTAAAGTACAAATATACTAATTTTATTTTGAT
*
32160328 ATGTTGCAACCAACTATAAAACATCCCCACTTAAAAAAATCATTATTGAGTTAAGGACTAAATTG
1 ATGTTGCAACCAACTATAAAACATCCCCACTTAAAAAAATCATTATTGAGTTAAAGACTAAATTG
*
32160393 AATAAGTTGGAAAAGTATAGGAACTAAAGTACAAATATACTAATTTTATTTTGAT
66 AACAAGTTGGAAAAGTATAGGAACTAAAGTACAAATATACTAATTTTATTTTGAT
32160448 GGAAAGGACC
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 114 1.00
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (120 bp):
ATGTTGCAACCAACTATAAAACATCCCCACTTAAAAAAATCATTATTGAGTTAAAGACTAAATTG
AACAAGTTGGAAAAGTATAGGAACTAAAGTACAAATATACTAATTTTATTTTGAT
Found at i:32191160 original size:27 final size:26
Alignment explanation
Indices: 32191123--32191207 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
32191113 ATTAATTATT
32191123 TAAAAGAAATTAAAAACTTAAAAATATA
1 TAAAA-AAATTAAAAA-TTAAAAATATA
*
32191151 TAAAAAAATTTAAAAATTAAAATTAT-
1 TAAAAAAA-TTAAAAATTAAAAATATA
** * *
32191177 TAAAATTATTAAAATAATATAAATATA
1 TAAAAAAATTAAAA-ATTAAAAATATA
32191204 TAAA
1 TAAA
32191208 TATATATTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
25 6 0.12
26 14 0.29
27 16 0.33
28 12 0.25
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (26 bp):
TAAAAAAATTAAAAATTAAAAATATA
Found at i:32191200 original size:18 final size:18
Alignment explanation
Indices: 32191131--32191199 Score: 54
Period size: 18 Copynumber: 3.8 Consensus size: 18
32191121 TTTAAAAGAA
* *
32191131 ATTAAAA-ACTTAAAAAT
1 ATTAAAATAATTAAAATT
*
32191148 ATATAAAAAAATTTAAAA--
1 AT-TAAAATAA-TTAAAATT
*
32191166 ATTAAAATTATTAAAATT
1 ATTAAAATAATTAAAATT
32191184 ATTAAAATAATATAAA
1 ATTAAAATAAT-TAAA
32191200 TATATAAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
16 6 0.14
17 8 0.19
18 17 0.40
19 5 0.12
20 6 0.14
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (18 bp):
ATTAAAATAATTAAAATT
Found at i:32191207 original size:18 final size:17
Alignment explanation
Indices: 32191144--32191207 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 17
32191134 AAAAACTTAA
*
32191144 AAATATATAAAAAAATTT
1 AAATATATAAAATAA-TT
* *
32191162 AAAAAT-TAAAATTATT
1 AAATATATAAAATAATT
32191178 AAA-ATTATTAAAATAATAT
1 AAATA-TA-TAAAATAAT-T
32191197 AAATATATAAA
1 AAATATATAAA
32191208 TATATATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
15 1 0.03
16 6 0.16
17 6 0.16
18 17 0.46
19 6 0.16
20 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATATATAAAATAATT
Found at i:32191619 original size:25 final size:23
Alignment explanation
Indices: 32191571--32191624 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
32191561 TTTGCTCACC
32191571 TCTCTCTTTCAAGGTAACTCTTT
1 TCTCTCTTTCAAGGTAACTCTTT
*
32191594 TCTCTCTTTCAAGGTAACTTTTT
1 TCTCTCTTTCAAGGTAACTCTTT
*
32191617 TTTCTCTT
1 TCTCTCTT
32191625 ACTATATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.15, C:0.24, G:0.07, T:0.54
Consensus pattern (23 bp):
TCTCTCTTTCAAGGTAACTCTTT
Found at i:32193122 original size:11 final size:12
Alignment explanation
Indices: 32193103--32193146 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
32193093 TATAAAATAC
*
32193103 TATTAAAATAAA
1 TATTAAATTAAA
32193115 TATTAAATTAAA
1 TATTAAATTAAA
32193127 T-TTAATATTAAA
1 TATTAA-ATTAAA
32193139 CTATTAAA
1 -TATTAAA
32193147 ACAATATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 4 0.14
12 18 0.64
13 2 0.07
14 4 0.14
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (12 bp):
TATTAAATTAAA
Found at i:32195167 original size:28 final size:28
Alignment explanation
Indices: 32195110--32195190 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 28
32195100 ACTATAATAC
* * * * *
32195110 TCAGGTGACAGGGCCGACCATATGTTAT
1 TCAGGGGACAGAGCCAACCATATATCAT
*
32195138 TCAAGTGG-CAGAGCCAACCATATATCAT
1 TC-AGGGGACAGAGCCAACCATATATCAT
* *
32195166 TCAGGGGACAGAGCCGACCACATAT
1 TCAGGGGACAGAGCCAACCATATAT
32195191 AGAAGCTAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
27 4 0.10
28 35 0.83
29 3 0.07
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.20
Consensus pattern (28 bp):
TCAGGGGACAGAGCCAACCATATATCAT
Found at i:32208361 original size:23 final size:23
Alignment explanation
Indices: 32208334--32208408 Score: 123
Period size: 23 Copynumber: 3.3 Consensus size: 23
32208324 ATCTTAATTC
32208334 TTTAAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* * *
32208357 TTTAATCATAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
32208380 TTTAAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
32208403 TTTAAG
1 TTTAAG
32208409 TACAGATATA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.47, C:0.13, G:0.04, T:0.36
Consensus pattern (23 bp):
TTTAAGCACAAATCACATTAATA
Found at i:32210703 original size:81 final size:81
Alignment explanation
Indices: 32210607--32210774 Score: 264
Period size: 81 Copynumber: 2.1 Consensus size: 81
32210597 ACTTTGACCT
* * *
32210607 CCTAAAATTGATAAAATTTTGATTTAATCCTTTAAAAATTACTTTTTTACTATCATAAAAATTAC
1 CCTAAAAATGATAAAATTTTGATCTAATCCTTTAAAAATTACATTTTTACTATCATAAAAATTAC
* *
32210672 AATTTAATTTTGCCCC
66 AATTTAACTTCGCCCC
* *
32210688 CCTAAAAATGTTAAAATTTTGATCTAATCCTTTAAAAATTACATTTTTACTATCATTAAAATTAC
1 CCTAAAAATGATAAAATTTTGATCTAATCCTTTAAAAATTACATTTTTACTATCATAAAAATTAC
*
32210753 AATTTAACTTCGGCCC
66 AATTTAACTTCGCCCC
32210769 CCTAAA
1 CCTAAA
32210775 CAATTTTTTG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.39, C:0.17, G:0.04, T:0.40
Consensus pattern (81 bp):
CCTAAAAATGATAAAATTTTGATCTAATCCTTTAAAAATTACATTTTTACTATCATAAAAATTAC
AATTTAACTTCGCCCC
Found at i:32213167 original size:3 final size:3
Alignment explanation
Indices: 32213159--32213183 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
32213149 ATGGAGAAAG
32213159 TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA T
32213184 AGTGATGGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:32213831 original size:23 final size:23
Alignment explanation
Indices: 32213805--32213879 Score: 89
Period size: 23 Copynumber: 3.3 Consensus size: 23
32213795 TTATCTGCCT
32213805 TTGTGGCAAGCTTTTCCTCTACC
1 TTGTGGCAAGCTTTTCCTCTACC
* * *
32213828 TTGTTGCATGCTTTTCCTCTACT
1 TTGTGGCAAGCTTTTCCTCTACC
* *
32213851 TTGTGGCACG-TTTTCGTCTACC
1 TTGTGGCAAGCTTTTCCTCTACC
32213873 TTTGTGG
1 -TTGTGG
32213880 TAGATTTGCG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
22 10 0.23
23 34 0.77
ACGTcount: A:0.09, C:0.25, G:0.20, T:0.45
Consensus pattern (23 bp):
TTGTGGCAAGCTTTTCCTCTACC
Found at i:32214580 original size:13 final size:13
Alignment explanation
Indices: 32214564--32214609 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
32214554 TTTAAATCAA
32214564 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
32214577 ACTTCTTC-ACAGC
1 ACTT-TTCAAAAGC
32214590 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
32214603 ACTTTTC
1 ACTTTTC
32214610 GATATAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 3 0.10
13 23 0.79
14 3 0.10
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:32218651 original size:13 final size:13
Alignment explanation
Indices: 32218633--32218667 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
32218623 ATCTCGTTTC
32218633 AAAACTAAAAATA
1 AAAACTAAAAATA
**
32218646 AAAACTAAACTTA
1 AAAACTAAAAATA
32218659 AAAACTAAA
1 AAAACTAAA
32218668 GTCTAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.71, C:0.11, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAACTAAAAATA
Found at i:32220811 original size:16 final size:16
Alignment explanation
Indices: 32220790--32220825 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
32220780 AAATAATACC
* *
32220790 AAAATTACATGTCTCA
1 AAAATTAAAAGTCTCA
32220806 AAAATTAAAAGTCTCA
1 AAAATTAAAAGTCTCA
32220822 AAAA
1 AAAA
32220826 CACTTTATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.14, G:0.06, T:0.25
Consensus pattern (16 bp):
AAAATTAAAAGTCTCA
Found at i:32224570 original size:23 final size:23
Alignment explanation
Indices: 32224544--32224606 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
32224534 AACCACAGCG
* *
32224544 AAACAACAGTAAAATAGCACCAA
1 AAACAACAGCAAAATAACACCAA
* *
32224567 AAACAACAGCACAACAACACCAA
1 AAACAACAGCAAAATAACACCAA
32224590 AAACAACATGCAAAATA
1 AAACAACA-GCAAAATA
32224607 TAATCAACCA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 27 0.82
24 6 0.18
ACGTcount: A:0.62, C:0.25, G:0.06, T:0.06
Consensus pattern (23 bp):
AAACAACAGCAAAATAACACCAA
Found at i:32227354 original size:10 final size:10
Alignment explanation
Indices: 32227339--32227375 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
32227329 AACGATAATC
32227339 TAAAAAATAT
1 TAAAAAATAT
32227349 TAAAAAATAT
1 TAAAAAATAT
32227359 TAAAAAAT-T
1 TAAAAAATAT
*
32227368 CAAAAAAT
1 TAAAAAAT
32227376 TATTTATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 8 0.31
10 18 0.69
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (10 bp):
TAAAAAATAT
Found at i:32227379 original size:20 final size:20
Alignment explanation
Indices: 32227339--32227375 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
32227329 AACGATAATC
*
32227339 TAAAAAATATTAAAAAATAT
1 TAAAAAATATCAAAAAATAT
32227359 TAAAAAAT-TCAAAAAAT
1 TAAAAAATATCAAAAAAT
32227376 TATTTATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (20 bp):
TAAAAAATATCAAAAAATAT
Found at i:32228700 original size:10 final size:10
Alignment explanation
Indices: 32228685--32228716 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
32228675 TGAGTATTCG
32228685 ATTGAATCGA
1 ATTGAATCGA
32228695 ATTGAATCGA
1 ATTGAATCGA
*
32228705 ATCGAATCGA
1 ATTGAATCGA
32228715 AT
1 AT
32228717 AAAAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (10 bp):
ATTGAATCGA
Found at i:32230197 original size:48 final size:50
Alignment explanation
Indices: 32230071--32230209 Score: 192
Period size: 48 Copynumber: 2.8 Consensus size: 50
32230061 CTATTAGATG
* * *
32230071 CGGTGGTGCTGGTCTGCTAGAGATGCACCTGCTGACTGCTCCTTCAATCGA
1 CGGTGGTGCTGGTCTGCTGGAGATGCACCTGCTGGCTGCTCC-TCAACCGA
* * *
32230122 CGATGGTGCTGGTCTGCAGGAGGTGCACCTGCTGGCTGCT-C-CAACCGA
1 CGGTGGTGCTGGTCTGCTGGAGATGCACCTGCTGGCTGCTCCTCAACCGA
*
32230170 CGGTGGTGCTGGTCTGCTGGAGATGCACTTGCTGGCTGCT
1 CGGTGGTGCTGGTCTGCTGGAGATGCACCTGCTGGCTGCT
32230210 GCCGAGGCCA
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
48 42 0.54
50 1 0.01
51 35 0.45
ACGTcount: A:0.13, C:0.27, G:0.35, T:0.26
Consensus pattern (50 bp):
CGGTGGTGCTGGTCTGCTGGAGATGCACCTGCTGGCTGCTCCTCAACCGA
Found at i:32230354 original size:41 final size:41
Alignment explanation
Indices: 32230278--32230367 Score: 96
Period size: 41 Copynumber: 2.2 Consensus size: 41
32230268 CTAAAAATGG
*
32230278 GAGTTTAATTTAGGGATTTTTTTAGGATAAAAAATTATT-TT
1 GAGTTTAATTTAGGGATTTTTTTAAGATAAAAAATT-TTATT
**
32230319 GAGTTTAATTTATGGG-TGTTTTTTAAGA-ATTAAATTTTATT
1 GAGTTTAATTTA-GGGAT-TTTTTTAAGATAAAAAATTTTATT
*
32230360 GGGTTTAA
1 GAGTTTAA
32230368 AAATAATTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
40 2 0.05
41 28 0.67
42 12 0.29
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (41 bp):
GAGTTTAATTTAGGGATTTTTTTAAGATAAAAAATTTTATT
Found at i:32230534 original size:9 final size:9
Alignment explanation
Indices: 32230510--32230545 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
32230500 ATATAATTTA
*
32230510 ATTCGATTT
1 ATTCGAATT
32230519 ATTCGAATT
1 ATTCGAATT
*
32230528 ATTCGAATA
1 ATTCGAATT
32230537 ATTCGAATT
1 ATTCGAATT
32230546 CGAAAATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (9 bp):
ATTCGAATT
Found at i:32231173 original size:47 final size:47
Alignment explanation
Indices: 32231104--32231198 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
32231094 ACCTCAACTT
32231104 TTATAATGGAAAGCCTTCCTTACATAAGACAAGTCTAAATAACATAC
1 TTATAATGGAAAGCCTTCCTTACATAAGACAAGTCTAAATAACATAC
*
32231151 TTATAATGTAAAGCCTTCCTTACATAAGACAAGTCTAAATAACATAC
1 TTATAATGGAAAGCCTTCCTTACATAAGACAAGTCTAAATAACATAC
32231198 T
1 T
32231199 AAGATAATGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.29
Consensus pattern (47 bp):
TTATAATGGAAAGCCTTCCTTACATAAGACAAGTCTAAATAACATAC
Found at i:32231704 original size:19 final size:20
Alignment explanation
Indices: 32231680--32231725 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
32231670 CAGCAACTTT
32231680 AATAAAACT-AATT-TTAAAA
1 AATAAAACTAAATTCTT-AAA
32231699 AATAAAACTAAATTCTTAAA
1 AATAAAACTAAATTCTTAAA
32231719 AATAAAA
1 AATAAAA
32231726 ATACTAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.36
20 14 0.56
21 2 0.08
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (20 bp):
AATAAAACTAAATTCTTAAA
Found at i:32238169 original size:9 final size:9
Alignment explanation
Indices: 32238155--32238184 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
32238145 TATGGGTCAT
32238155 TTTCAAATA
1 TTTCAAATA
32238164 TTTCAAATA
1 TTTCAAATA
32238173 TTTCAAATA
1 TTTCAAATA
32238182 TTT
1 TTT
32238185 TATTGTGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (9 bp):
TTTCAAATA
Found at i:32238899 original size:19 final size:21
Alignment explanation
Indices: 32238866--32238905 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
32238856 TTGTAAGTAA
*
32238866 AGAGTGAAAAGT-AAAAGTTT
1 AGAGTGAAAAATAAAAAGTTT
32238886 AGAG-GAAAAATAAAAAGTTT
1 AGAGTGAAAAATAAAAAGTTT
32238906 TGGAGGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.55, C:0.00, G:0.23, T:0.23
Consensus pattern (21 bp):
AGAGTGAAAAATAAAAAGTTT
Found at i:32239202 original size:167 final size:169
Alignment explanation
Indices: 32238946--32239258 Score: 399
Period size: 167 Copynumber: 1.9 Consensus size: 169
32238936 AAGTAATTAG
* ** * *
32238946 GGGGGGTAAAATTTTGGAGGGGAAATATTCAAAAAAATTGGGAGGGGGGAGTGGGTTTGGGTAGA
1 GGGGAGTAAAATTTTGGAGGAAAAATATTCAAAAAAATT-GGAGGGGGAAATGGGTTTGGGTAGA
* * * *
32239011 TGGAGGGTTGGATGGGAAGGGAGTAAAAGTTTTAGGGGGAAAGTGA-GAGAGAGTAAAAGTTTTT
65 TGGAGGGTTGAATGAGAAGGGAGTAAAAGTTTT-GAGGGAAAGTGAGGA-AGAGTAAAAG-CTTT
*
32239075 GGAGAAAA-TAAAATGTTTTGAGGGTTTTTGAGGAAAATAAAT
127 GGAGAAAAGTAAAAGGTTTTGAGGGTTTTTGAGGAAAATAAAT
32239117 GGGGAGTAAAATTTTGGAGGAAAAATATT-AAAAAAATT-G-GGGGGAAATGGGTTTGGAGTA-A
1 GGGGAGTAAAATTTTGGAGGAAAAATATTCAAAAAAATTGGAGGGGGAAATGGGTTTGG-GTAGA
*
32239178 TAGG-GGG-TGAAATGAGAGGGGAGTAAAAGTTTTGAGGGAAAGTGAGGAAGAGTAAAAGCTTTG
65 T-GGAGGGTTG-AATGAGAAGGGAGTAAAAGTTTTGAGGGAAAGTGAGGAAGAGTAAAAGCTTTG
*
32239241 GGGAAAAGTAAAAGGTTT
128 GAGAAAAGTAAAAGGTTT
32239259 GGAGTTTGAG
Statistics
Matches: 125, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
165 10 0.08
166 32 0.26
167 42 0.34
168 6 0.05
170 9 0.07
171 26 0.21
ACGTcount: A:0.37, C:0.01, G:0.38, T:0.24
Consensus pattern (169 bp):
GGGGAGTAAAATTTTGGAGGAAAAATATTCAAAAAAATTGGAGGGGGAAATGGGTTTGGGTAGAT
GGAGGGTTGAATGAGAAGGGAGTAAAAGTTTTGAGGGAAAGTGAGGAAGAGTAAAAGCTTTGGAG
AAAAGTAAAAGGTTTTGAGGGTTTTTGAGGAAAATAAAT
Found at i:32239250 original size:19 final size:19
Alignment explanation
Indices: 32239223--32239260 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32239213 GGGAAAGTGA
*
32239223 GGAAGAGTAAAAGCTTTGG
1 GGAAAAGTAAAAGCTTTGG
*
32239242 GGAAAAGTAAAAGGTTTGG
1 GGAAAAGTAAAAGCTTTGG
32239261 AGTTTGAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.37, T:0.21
Consensus pattern (19 bp):
GGAAAAGTAAAAGCTTTGG
Found at i:32239407 original size:18 final size:18
Alignment explanation
Indices: 32239384--32239418 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32239374 ATTCAAGTTG
*
32239384 ACTCGAATAATTCGATTA
1 ACTCGAATAACTCGATTA
32239402 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
32239419 TGTTTAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:32245317 original size:24 final size:22
Alignment explanation
Indices: 32245290--32245333 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
32245280 TTTTAATCAT
32245290 TTATAAATATAATAAAAGTAAATA
1 TTATAAA-ATAATAAAA-TAAATA
*
32245314 TTATAAAATACTAAAATAAA
1 TTATAAAATAATAAAATAAA
32245334 AGATTTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 8 0.42
24 7 0.37
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (22 bp):
TTATAAAATAATAAAATAAATA
Found at i:32247941 original size:33 final size:33
Alignment explanation
Indices: 32247832--32247948 Score: 85
Period size: 33 Copynumber: 3.5 Consensus size: 33
32247822 CAAAAATTAC
* * *
32247832 AAAATA-ATTTAAAATAATTTTCAAAAATTCAAA
1 AAAATATATTTAAAAAAATTAT-AAAAATTCTAA
* * * * *
32247865 CAAAATTAAAATTAAAATATTTATAAAACTT-TCAA
1 -AAAA-TATATTTAAAAAAATTATAAAAATTCT-AA
**
32247900 AATTTATATTTAAAAAAATTATAAAAATTCTAA
1 AAAATATATTTAAAAAAATTATAAAAATTCTAA
*
32247933 AAAATATATATAAAAA
1 AAAATATATTTAAAAA
32247949 GTTAAATTTT
Statistics
Matches: 64, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
33 35 0.55
34 7 0.11
35 10 0.16
36 12 0.19
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (33 bp):
AAAATATATTTAAAAAAATTATAAAAATTCTAA
Found at i:32250920 original size:3 final size:3
Alignment explanation
Indices: 32250912--32250937 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32250902 AACAGACATG
32250912 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
32250938 AACAACTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:32251125 original size:23 final size:22
Alignment explanation
Indices: 32251062--32251135 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 22
32251052 ATATGATATA
* *
32251062 TATATATATATAAAATTTAATTT
1 TATAAATATTTAAAA-TTAATTT
* *
32251085 TACAAATAGTTT-ATATTAATTTT
1 TATAAATA-TTTAAAATTAA-TTT
32251108 TATAAATATTTAAAATTAAAATTT
1 TATAAATATTTAAAATT--AATTT
32251132 TATA
1 TATA
32251136 TTTTATAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
22 7 0.17
23 22 0.55
24 9 0.22
25 2 0.05
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (22 bp):
TATAAATATTTAAAATTAATTT
Found at i:32252075 original size:23 final size:23
Alignment explanation
Indices: 32252018--32252076 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
32252008 ATATATATTG
*
32252018 AAATTAA-ATTTTACAAATAATTT
1 AAATTAATA-TTTAAAAATAATTT
*
32252041 ATATTAATTATTTAAAAAT-ATTT
1 AAATTAA-TATTTAAAAATAATTT
32252064 AAAATTAATATTT
1 -AAATTAATATTT
32252077 CATATATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 15 0.50
24 14 0.47
25 1 0.03
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
AAATTAATATTTAAAAATAATTT
Found at i:32253269 original size:23 final size:23
Alignment explanation
Indices: 32253249--32253292 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
32253239 TTTTTTATAG
32253249 ATTAAAATATAAGTTTATTATGT
1 ATTAAAATATAAGTTTATTATGT
** *
32253272 ATTAATTTATAATTTTATTAT
1 ATTAAAATATAAGTTTATTAT
32253293 TTCTGAAGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (23 bp):
ATTAAAATATAAGTTTATTATGT
Found at i:32257120 original size:58 final size:58
Alignment explanation
Indices: 32257032--32257191 Score: 188
Period size: 58 Copynumber: 2.8 Consensus size: 58
32257022 ATATATTATA
* *
32257032 ATTTTTACT-AATTCATATTTTAATAATAATTATATTAAAA-AT-ATT-ATTAAATTACAT
1 ATTTTTATTAAATT-ATA-TTTAATAATAATTATATTAAAATATAATTAAATAAATTA-AT
* *
32257089 ATTATTTTATTAAATTGTATTTAATAATAATTATGTTAAAATATAATTAAATAAATTAAT
1 A-T-TTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATAAATTAAT
*
32257149 ATTTTTATTAAATTATATTTAATAATAA-TA-ATTAAAATTTAAT
1 ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAAT
32257192 AACAATAATC
Statistics
Matches: 90, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
56 11 0.12
57 3 0.03
58 47 0.52
59 11 0.12
60 10 0.11
61 8 0.09
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (58 bp):
ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATAAATTAAT
Found at i:32257315 original size:39 final size:44
Alignment explanation
Indices: 32257260--32257364 Score: 114
Period size: 46 Copynumber: 2.5 Consensus size: 44
32257250 TTTCTTATGC
*
32257260 TATTACAGCATC-ATTCCATT-CAACCAA-ACACAA-GAA-TA-T
1 TATTACAGC-TCTATTCCATTCCAACCAACAAACAATGAATTACT
*
32257299 TATTACAGCTCTATTCCATTCCAATCAACCAAACAATTGAATTACT
1 TATTACAGCTCTATTCCATTCCAACCAA-CAAACAA-TGAATTACT
*
32257345 GATTACAGCTCTATTCCATT
1 TATTACAGCTCTATTCCATT
32257365 ACAGCTCTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
38 2 0.04
39 17 0.31
40 6 0.11
42 5 0.09
44 3 0.05
45 2 0.04
46 20 0.36
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (44 bp):
TATTACAGCTCTATTCCATTCCAACCAACAAACAATGAATTACT
Found at i:32257363 original size:46 final size:44
Alignment explanation
Indices: 32257271--32257364 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
32257261 ATTACAGCAT
* *
32257271 CATTCCATTCAACCAAACACAAGAATATTATTACAGCTCTATTC
1 CATTCCAATCAACCAAACACAAGAATATGATTACAGCTCTATTC
*
32257315 CATTCCAATCAACCAAACA-ATTGAATTACTGATTACAGCTCTATTC
1 CATTCCAATCAACCAAACACA-AGAA-TA-TGATTACAGCTCTATTC
32257361 CATT
1 CATT
32257365 ACAGCTCTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 21 0.48
45 2 0.05
46 20 0.45
ACGTcount: A:0.37, C:0.27, G:0.05, T:0.31
Consensus pattern (44 bp):
CATTCCAATCAACCAAACACAAGAATATGATTACAGCTCTATTC
Found at i:32257367 original size:16 final size:16
Alignment explanation
Indices: 32257346--32257401 Score: 103
Period size: 16 Copynumber: 3.5 Consensus size: 16
32257336 TGAATTACTG
32257346 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
32257362 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
32257378 ATTACACCTCTATTCC
1 ATTACAGCTCTATTCC
32257394 ATTACAGC
1 ATTACAGC
32257402 GAACCAAACG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.27, C:0.32, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:32263482 original size:30 final size:29
Alignment explanation
Indices: 32263448--32263560 Score: 147
Period size: 30 Copynumber: 3.8 Consensus size: 29
32263438 AATCGAGTCA
32263448 AAATTTGAATTTTT-GAAAAGTTTGGAGGTT
1 AAATTTGAATTTTTAG-AAAGTTTGG-GGTT
*
32263478 AAATTTGAATTTTTAGAAAGTTTAGGGGTC
1 AAATTTGAATTTTTAGAAAGTTT-GGGGTT
* * *
32263508 AAATTAGAATTTTTAAAAAATTTGGGGGTT
1 AAATTTGAATTTTTAGAAAGTTT-GGGGTT
32263538 AAATTTGAATTTTTAGAAAGTTT
1 AAATTTGAATTTTTAGAAAGTTT
32263561 AGTGGTCAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
30 69 0.96
31 3 0.04
ACGTcount: A:0.36, C:0.01, G:0.20, T:0.42
Consensus pattern (29 bp):
AAATTTGAATTTTTAGAAAGTTTGGGGTT
Found at i:32263512 original size:60 final size:60
Alignment explanation
Indices: 32263448--32263570 Score: 201
Period size: 60 Copynumber: 2.0 Consensus size: 60
32263438 AATCGAGTCA
* * *
32263448 AAATTTGAATTTTTGAAAAGTTTGGAGGTTAAATTTGAATTTTTAGAAAGTTTAGGGGTC
1 AAATTAGAATTTTTAAAAAATTTGGAGGTTAAATTTGAATTTTTAGAAAGTTTAGGGGTC
* *
32263508 AAATTAGAATTTTTAAAAAATTTGGGGGTTAAATTTGAATTTTTAGAAAGTTTAGTGGTC
1 AAATTAGAATTTTTAAAAAATTTGGAGGTTAAATTTGAATTTTTAGAAAGTTTAGGGGTC
32263568 AAA
1 AAA
32263571 ACATAATTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.37, C:0.02, G:0.21, T:0.41
Consensus pattern (60 bp):
AAATTAGAATTTTTAAAAAATTTGGAGGTTAAATTTGAATTTTTAGAAAGTTTAGGGGTC
Found at i:32263579 original size:30 final size:30
Alignment explanation
Indices: 32263485--32263580 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 30
32263475 GTTAAATTTG
* *
32263485 AATTTTTAGAAAGTTTAGGGGTCAAATTAG
1 AATTTTTAGAAAGTTTAGGGGTCAAAATAT
* * * * *
32263515 AATTTTTAAAAAATTTGGGGGT-TAAATTT
1 AATTTTTAGAAAGTTTAGGGGTCAAAATAT
* *
32263544 GAATTTTTAGAAAGTTTAGTGGTCAAAACAT
1 -AATTTTTAGAAAGTTTAGGGGTCAAAATAT
32263575 AATTTT
1 AATTTT
32263581 AAAATAAAGC
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
29 3 0.06
30 43 0.86
31 4 0.08
ACGTcount: A:0.38, C:0.03, G:0.19, T:0.41
Consensus pattern (30 bp):
AATTTTTAGAAAGTTTAGGGGTCAAAATAT
Found at i:32263579 original size:60 final size:60
Alignment explanation
Indices: 32263454--32263584 Score: 192
Period size: 60 Copynumber: 2.2 Consensus size: 60
32263444 GTCAAAATTT
* * **
32263454 GAATTTTTGAAAAGTTTGGAGGTTAAATTTGAATTTTTAGAAAGTTTAGGGGTCAAATTA
1 GAATTTTTAAAAAATTTGGAGGTTAAATTTGAATTTTTAGAAAGTTTAGGGGTCAAAACA
* *
32263514 GAATTTTTAAAAAATTTGGGGGTTAAATTTGAATTTTTAGAAAGTTTAGTGGTCAAAACA
1 GAATTTTTAAAAAATTTGGAGGTTAAATTTGAATTTTTAGAAAGTTTAGGGGTCAAAACA
*
32263574 TAA-TTTTAAAA
1 GAATTTTTAAAA
32263585 TAAAGCAGGG
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
59 8 0.12
60 56 0.88
ACGTcount: A:0.38, C:0.02, G:0.20, T:0.40
Consensus pattern (60 bp):
GAATTTTTAAAAAATTTGGAGGTTAAATTTGAATTTTTAGAAAGTTTAGGGGTCAAAACA
Found at i:32264796 original size:71 final size:71
Alignment explanation
Indices: 32264701--32264861 Score: 279
Period size: 71 Copynumber: 2.3 Consensus size: 71
32264691 TATATTCATA
* *
32264701 AAATAAATAAATAATAAAACAAAATTAATATTATTTT-TCATTTATTTATTTATATTCATACAAT
1 AAATAAATAAATAAAAAAACAAAATTAATATTATTTTAT-ATTTATTTATTTATATTCATAAAAT
32264765 AATAAAT
65 AATAAAT
32264772 AAATAAATAAATAAAAAAACAAAATTAATATTATTTTATATTTATTTATTTATATTCATAAAATA
1 AAATAAATAAATAAAAAAACAAAATTAATATTATTTTATATTTATTTATTTATATTCATAAAATA
32264837 ATAAAT
66 ATAAAT
*
32264843 AAATAAATAAATAAGAAAA
1 AAATAAATAAATAAAAAAA
32264862 GTAAAATTGG
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
71 85 0.99
72 1 0.01
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.39
Consensus pattern (71 bp):
AAATAAATAAATAAAAAAACAAAATTAATATTATTTTATATTTATTTATTTATATTCATAAAATA
ATAAAT
Found at i:32265541 original size:40 final size:41
Alignment explanation
Indices: 32265470--32265789 Score: 320
Period size: 40 Copynumber: 8.0 Consensus size: 41
32265460 TATAACTTTA
* *
32265470 AGGGTAAAAGATTGGATTGT-TTCAATTTGCCCCATGGTCG
1 AGGGTAAAAGATTGGATGGTCTTCAATCTGCCCCATGGTCG
* *
32265510 A-GGTAAAAGATTAGATGGTCTTCAATCTGCCCCATGATC-
1 AGGGTAAAAGATTGGATGGTCTTCAATCTGCCCCATGGTCG
* * *** * *
32265549 AGGGTAAAAGATTGGATTGTCTTCAATCTACCATTTGAT-T
1 AGGGTAAAAGATTGGATGGTCTTCAATCTGCCCCATGGTCG
*
32265589 AGGGTAAAAGATTGGATGGTCTTCAATTTGCCCCATGGTC-
1 AGGGTAAAAGATTGGATGGTCTTCAATCTGCCCCATGGTCG
* ** * *
32265629 AGGGTAAAAGATTGGATGGTCTTCAATCTACCCTTTGAT-T
1 AGGGTAAAAGATTGGATGGTCTTCAATCTGCCCCATGGTCG
* * ** *
32265669 AGGGTAAAAAATTAGATGGTCTTCAATCTGCCCTC-TAAT-T
1 AGGGTAAAAGATTGGATGGTCTTCAATCTGCCC-CATGGTCG
* *
32265709 AGGGTAAAAGATTGG-TTGT-TTCAATTTGCCCCATGGTCG
1 AGGGTAAAAGATTGGATGGTCTTCAATCTGCCCCATGGTCG
* *
32265748 -GGATAAAAGATTGGATGGTCTTCAATCTGCCTCATGGTCG
1 AGGGTAAAAGATTGGATGGTCTTCAATCTGCCCCATGGTCG
32265788 AG
1 AG
32265790 TAAGAGATCG
Statistics
Matches: 231, Mismatches: 38, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
37 1 0.00
38 26 0.11
39 23 0.10
40 180 0.78
41 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (41 bp):
AGGGTAAAAGATTGGATGGTCTTCAATCTGCCCCATGGTCG
Found at i:32265607 original size:80 final size:80
Alignment explanation
Indices: 32265470--32265783 Score: 361
Period size: 80 Copynumber: 4.0 Consensus size: 80
32265460 TATAACTTTA
* * ** * *
32265470 AGGGTAAAAGATTGGATTGT-TTCAATTTGCCCCATG-GTCGAGGTAAAAGATTAGATGGTCTTC
1 AGGGTAAAAGATTGGATTGTCTTCAATCTACCCTTTGATTAG-GGTAAAAGATTAGATGGTCTTC
32265533 AATCTGCCCCATGATC
65 AATCTGCCCCATGATC
* *
32265549 AGGGTAAAAGATTGGATTGTCTTCAATCTACCATTTGATTAGGGTAAAAGATTGGATGGTCTTCA
1 AGGGTAAAAGATTGGATTGTCTTCAATCTACCCTTTGATTAGGGTAAAAGATTAGATGGTCTTCA
* *
32265614 ATTTGCCCCATGGTC
66 ATCTGCCCCATGATC
* *
32265629 AGGGTAAAAGATTGGATGGTCTTCAATCTACCCTTTGATTAGGGTAAAAAATTAGATGGTCTTCA
1 AGGGTAAAAGATTGGATTGTCTTCAATCTACCCTTTGATTAGGGTAAAAGATTAGATGGTCTTCA
* *
32265694 ATCTGCCCTC-TAATT
66 ATCTGCCC-CATGATC
* * ** * * *
32265709 AGGGTAAAAGATTGG-TTGT-TTCAATTTGCCCCATG-GTCGGGATAAAAGATTGGATGGTCTTC
1 AGGGTAAAAGATTGGATTGTCTTCAATCTACCCTTTGATTAGGG-TAAAAGATTAGATGGTCTTC
*
32265771 AATCTGCCTCATG
65 AATCTGCCCCATG
32265784 GTCGAGTAAG
Statistics
Matches: 201, Mismatches: 29, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
77 5 0.02
78 39 0.19
79 23 0.11
80 131 0.65
81 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (80 bp):
AGGGTAAAAGATTGGATTGTCTTCAATCTACCCTTTGATTAGGGTAAAAGATTAGATGGTCTTCA
ATCTGCCCCATGATC
Found at i:32265691 original size:120 final size:118
Alignment explanation
Indices: 32265470--32265775 Score: 452
Period size: 120 Copynumber: 2.6 Consensus size: 118
32265460 TATAACTTTA
*
32265470 AGGGTAAAAGATTGGATTGTTTCAATTTGCCCCATGGTCGAGGTAAAAGATTAGATGGTCTTCAA
1 AGGGTAAAAGATTGGATTGTTTCAATTTGCCCCATGGTCG-GGTAAAAGATTGGATGGTCTTCAA
* * * * * *
32265535 TCTGCCCCATGATCAGGGTAAAAGATTGGATTGTCTTCAATCTACCATTTGATT
65 TCTACCCCATGATCAGGGTAAAAAATTAGATGGTCTTCAATCTACCATCTAATT
*
32265589 AGGGTAAAAGATTGGATGGTCTTCAATTTGCCCCATGGTCAGGGTAAAAGATTGGATGGTCTTCA
1 AGGGTAAAAGATTGGATTGT-TTCAATTTGCCCCATGGTC-GGGTAAAAGATTGGATGGTCTTCA
** * * *
32265654 ATCTACCCTTTGATTAGGGTAAAAAATTAGATGGTCTTCAATCTGCCCTCTAATT
64 ATCTACCCCATGATCAGGGTAAAAAATTAGATGGTCTTCAATCTACCATCTAATT
32265709 AGGGTAAAAGATTGG-TTGTTTCAATTTGCCCCATGGTCGGGATAAAAGATTGGATGGTCTTCAA
1 AGGGTAAAAGATTGGATTGTTTCAATTTGCCCCATGGTCGGG-TAAAAGATTGGATGGTCTTCAA
32265773 TCT
65 TCT
32265776 GCCTCATGGT
Statistics
Matches: 170, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
117 3 0.02
118 44 0.26
119 22 0.13
120 100 0.59
121 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (118 bp):
AGGGTAAAAGATTGGATTGTTTCAATTTGCCCCATGGTCGGGTAAAAGATTGGATGGTCTTCAAT
CTACCCCATGATCAGGGTAAAAAATTAGATGGTCTTCAATCTACCATCTAATT
Found at i:32277652 original size:30 final size:28
Alignment explanation
Indices: 32277616--32277700 Score: 116
Period size: 30 Copynumber: 2.9 Consensus size: 28
32277606 AACCGAGTCA
32277616 AAATTTGAATTTTTGAAAAGTTTGGAGGTT
1 AAATTTGAATTTTTG-AAAGTTTGG-GGTT
*
32277646 AAATTTGAATTTTTGGAAAGTTTAGGGTT
1 AAATTTGAATTTTT-GAAAGTTTGGGGTT
* *
32277675 AAATTGGAATTTTAGAAAGTTTGGGG
1 AAATTTGAATTTTTGAAAGTTTGGGG
32277701 GTCAAAACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
28 11 0.22
29 16 0.32
30 22 0.44
31 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (28 bp):
AAATTTGAATTTTTGAAAGTTTGGGGTT
Found at i:32277702 original size:29 final size:29
Alignment explanation
Indices: 32277616--32277702 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
32277606 AACCGAGTCA
* *
32277616 AAATTTGAATTTTTGAAAAGTTTGGAGGTT
1 AAATTTGAATTTTAG-AAAGTTTGGGGGTT
* *
32277646 AAATTTGAATTTTTGGAAAGTTT-AGGGTT
1 AAATTTGAA-TTTTAGAAAGTTTGGGGGTT
*
32277675 AAATTGGAATTTTAGAAAGTTTGGGGGT
1 AAATTTGAATTTTAGAAAGTTTGGGGGT
32277703 CAAAACATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
28 12 0.24
29 16 0.33
30 16 0.33
31 5 0.10
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.41
Consensus pattern (29 bp):
AAATTTGAATTTTAGAAAGTTTGGGGGTT
Found at i:32278879 original size:71 final size:67
Alignment explanation
Indices: 32278794--32278944 Score: 239
Period size: 67 Copynumber: 2.2 Consensus size: 67
32278784 TTTATTTTAT
*
32278794 AATAAATAAATAATAAAACAAAATTAATATTATTTTACATTTATTTATTTATTTATATTCATACA
1 AATAAATAAATAATAAAACAAAATTAATATTATTTT--A--TATTTATTTATTTATATTCATAAA
32278859 ATAATA
62 ATAATA
*
32278865 AATAAATAAATAATAAAACAAAATTAATATTATTTTATATTTATTTATTTATATTTATAAAATAA
1 AATAAATAAATAATAAAACAAAATTAATATTATTTTATATTTATTTATTTATATTCATAAAATAA
32278930 TA
66 TA
*
32278932 AAAAAATAAATAA
1 AATAAATAAATAA
32278945 ATAGAATAAG
Statistics
Matches: 77, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
67 40 0.52
69 1 0.01
71 36 0.47
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (67 bp):
AATAAATAAATAATAAAACAAAATTAATATTATTTTATATTTATTTATTTATATTCATAAAATAA
TA
Found at i:32278945 original size:71 final size:71
Alignment explanation
Indices: 32278794--32278947 Score: 231
Period size: 71 Copynumber: 2.2 Consensus size: 71
32278784 TTTATTTTAT
* *
32278794 AATAAATAAATAATAAAACAAAATTAATATTATTTTACATTTATTTATTTATTTATATTCATACA
1 AATAAATAAATAATAAAACAAAATTAATATTATTTTACATTTATTTATTTATTTATATTAAAACA
*
32278859 ATAATA
66 ATAAAA
* *
32278865 AATAAATAAATAATAAAACAAAATTAATATTATTTTATATTTATTTATTTATATT-TA-TAAAAT
1 AATAAATAAATAATAAAACAAAATTAATATTATTTTACATTTATTTATTTAT-TTATATTAAAAC
32278928 AATAAAAA
65 AAT-AAAA
32278936 AATAAATAAATA
1 AATAAATAAATA
32278948 GAATAAGAAA
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
70 6 0.08
71 68 0.89
72 2 0.03
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (71 bp):
AATAAATAAATAATAAAACAAAATTAATATTATTTTACATTTATTTATTTATTTATATTAAAACA
ATAAAA
Found at i:32279109 original size:46 final size:46
Alignment explanation
Indices: 32279029--32279119 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
32279019 TACTAATTTA
* * ** * *
32279029 TAATATTAGTTATGCACTTGGACGATGTTGTAGTTATCATGTGGTC
1 TAATACTAGTTATGCACTTGAAAAATATTATAGTTATCATGTGGTC
32279075 TAATACTAGTTATGCACTTGAAAAATATTATAGTTATCATGTGGT
1 TAATACTAGTTATGCACTTGAAAAATATTATAGTTATCATGTGGT
32279120 GAACTACTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (46 bp):
TAATACTAGTTATGCACTTGAAAAATATTATAGTTATCATGTGGTC
Found at i:32283392 original size:23 final size:23
Alignment explanation
Indices: 32283366--32283418 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
32283356 TACGCAAATT
* *
32283366 AGTAGGCACACAAGGTGCGAAAC
1 AGTAAGCACACAAAGTGCGAAAC
32283389 AGTAAGCACACAAAGTGCGAAAC
1 AGTAAGCACACAAAGTGCGAAAC
32283412 AGTAAGC
1 AGTAAGC
32283419 GCGCTAGCGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.43, C:0.21, G:0.26, T:0.09
Consensus pattern (23 bp):
AGTAAGCACACAAAGTGCGAAAC
Found at i:32294933 original size:31 final size:29
Alignment explanation
Indices: 32294869--32294937 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
32294859 ACTATAACGT
* *
32294869 AAGTGACTAAAACGTAACATTTTAAACAT
1 AAGTGACTAAAACGTAACATGTTAAACAA
* *
32294898 AAGTGACTAAAATGTAACCTGAGTTAAACAA
1 AAGTGACTAAAACGTAACAT--GTTAAACAA
32294929 AAGTGACTA
1 AAGTGACTA
32294938 TTTTTGTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 18 0.53
31 16 0.47
ACGTcount: A:0.48, C:0.13, G:0.14, T:0.25
Consensus pattern (29 bp):
AAGTGACTAAAACGTAACATGTTAAACAA
Found at i:32298378 original size:3 final size:3
Alignment explanation
Indices: 32298370--32298396 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32298360 GCGGTGGCGC
32298370 CTG CTG CTG CTG CTG CTG CTG CTG CTG
1 CTG CTG CTG CTG CTG CTG CTG CTG CTG
32298397 TCGCCGCCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.33, T:0.33
Consensus pattern (3 bp):
CTG
Found at i:32299347 original size:7 final size:6
Alignment explanation
Indices: 32299324--32299353 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
32299314 AGGTGAAATC
32299324 AAAGCA AAAGCA AAAGCAA AAAGCA AAAGC
1 AAAGCA AAAGCA AAAGC-A AAAGCA AAAGC
32299354 CAACGTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.67, C:0.17, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAGCA
Found at i:32299347 original size:13 final size:12
Alignment explanation
Indices: 32299324--32299353 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
32299314 AGGTGAAATC
32299324 AAAGCAAAAGCA
1 AAAGCAAAAGCA
32299336 AAAGCAAAAAGCA
1 AAAGC-AAAAGCA
32299349 AAAGC
1 AAAGC
32299354 CAACGTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.67, C:0.17, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAGCAAAAGCA
Found at i:32301596 original size:13 final size:13
Alignment explanation
Indices: 32301578--32301605 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32301568 AGAGTAGTAG
32301578 TTGGTGATTAACT
1 TTGGTGATTAACT
32301591 TTGGTGATTAACT
1 TTGGTGATTAACT
32301604 TT
1 TT
32301606 ATAATTAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.50
Consensus pattern (13 bp):
TTGGTGATTAACT
Found at i:32310650 original size:20 final size:20
Alignment explanation
Indices: 32310614--32310651 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32310604 TTTTAGAAAT
*
32310614 TATAAAAATTATTAAAATGA
1 TATAAAAATTATGAAAATGA
32310634 TATAAAAA-TATAGAAAAT
1 TATAAAAATTAT-GAAAAT
32310652 TATACTGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (20 bp):
TATAAAAATTATGAAAATGA
Found at i:32310670 original size:20 final size:19
Alignment explanation
Indices: 32310618--32310670 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
32310608 AGAAATTATA
32310618 AAAATTATTAAAATGATAT
1 AAAATTATTAAAATGATAT
* * *
32310637 AAAAATATAGAAAATTATACT
1 AAAATTAT-TAAAATGATA-T
*
32310658 GAAATTATTAAAA
1 AAAATTATTAAAA
32310671 AATATTTAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
19 7 0.27
20 12 0.46
21 7 0.27
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (19 bp):
AAAATTATTAAAATGATAT
Found at i:32310711 original size:9 final size:9
Alignment explanation
Indices: 32310688--32310739 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
32310678 AAAAGAGGAG
32310688 TAATTTTTA
1 TAATTTTTA
*
32310697 -AGTTTTTA
1 TAATTTTTA
32310705 TAATTTTATAA
1 TAATTTT-T-A
*
32310716 TAATTTATA
1 TAATTTTTA
32310725 TAATTTTTA
1 TAATTTTTA
*
32310734 AAATTT
1 TAATTT
32310740 AATGATATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
8 7 0.20
9 19 0.54
10 2 0.06
11 7 0.20
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (9 bp):
TAATTTTTA
Found at i:32310740 original size:28 final size:28
Alignment explanation
Indices: 32310699--32310767 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
32310689 AATTTTTAAG
* *
32310699 TTTTTATAATTTTATAATAATTTATATAA
1 TTTTTAAAATTTAATAATAATTTA-ATAA
* *
32310728 TTTTTAAAATTTAATGATATTTTAATAA
1 TTTTTAAAATTTAATAATAATTTAATAA
* *
32310756 TTATTAATATTT
1 TTTTTAAAATTT
32310768 TTTTTAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 14 0.41
29 20 0.59
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (28 bp):
TTTTTAAAATTTAATAATAATTTAATAA
Found at i:32310757 original size:19 final size:19
Alignment explanation
Indices: 32310703--32310757 Score: 69
Period size: 18 Copynumber: 2.9 Consensus size: 19
32310693 TTTAAGTTTT
32310703 TATAATTTTATAATAATTTA
1 TATAATTTT-TAATAATTTA
32310723 TATAATTTTTAA-AATTTA
1 TATAATTTTTAATAATTTA
*
32310741 -ATGATATTTTAATAATT
1 TATAAT-TTTTAATAATT
32310758 ATTAATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
17 4 0.12
18 12 0.38
19 7 0.22
20 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TATAATTTTTAATAATTTA
Found at i:32310765 original size:18 final size:19
Alignment explanation
Indices: 32310701--32310768 Score: 65
Period size: 18 Copynumber: 3.7 Consensus size: 19
32310691 TTTTTAAGTT
32310701 TTTA-TAAT-TTTATAATAA
1 TTTATTAATATTT-TAATAA
32310719 TTTATATAAT-TTTTAA-AA
1 TTTAT-TAATATTTTAATAA
* *
32310737 TTTAATGATATTTTAATAA
1 TTTATTAATATTTTAATAA
32310756 -TTATTAATATTTT
1 TTTATTAATATTTT
32310769 TTTTAAAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 3 0.07
18 27 0.64
19 5 0.12
20 7 0.17
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57
Consensus pattern (19 bp):
TTTATTAATATTTTAATAA
Found at i:32311098 original size:20 final size:21
Alignment explanation
Indices: 32311053--32311099 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
32311043 ATTTTCATAT
**
32311053 ATTTTTATGATTTTTTTTACA
1 ATTTTTATGATTTTTTCAACA
*
32311074 GTTTTTAT-ATTTTTTCAACA
1 ATTTTTATGATTTTTTCAACA
32311094 ATTTTT
1 ATTTTT
32311100 TCTAAATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.66
Consensus pattern (21 bp):
ATTTTTATGATTTTTTCAACA
Found at i:32311190 original size:21 final size:21
Alignment explanation
Indices: 32311163--32311207 Score: 67
Period size: 19 Copynumber: 2.2 Consensus size: 21
32311153 ATAAATCTTT
*
32311163 ATAATTTTTTTATA-TTTTTC
1 ATAATATTTTTATATTTTTTC
32311183 -TAATATTTTTATATTTTTTC
1 ATAATATTTTTATATTTTTTC
32311203 ATAAT
1 ATAAT
32311208 CTATTGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 12 0.55
20 6 0.27
21 4 0.18
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (21 bp):
ATAATATTTTTATATTTTTTC
Found at i:32311247 original size:20 final size:19
Alignment explanation
Indices: 32311198--32311252 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 19
32311188 TTTTTATATT
*
32311198 TTTTCATAATCTATTGAAAA
1 TTTTCATAAT-AATTGAAAA
*
32311218 TGTTTTATAATAATTGATAAA
1 T-TTTCATAATAATTGA-AAA
32311239 TTTTCATAATAATT
1 TTTTCATAATAATT
32311253 TTTCTTAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.49
Consensus pattern (19 bp):
TTTTCATAATAATTGAAAA
Found at i:32311300 original size:21 final size:21
Alignment explanation
Indices: 32311270--32311309 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
32311260 ATTTATTTTA
32311270 ATAATGTTTATAATTTTCTCT
1 ATAATGTTTATAATTTTCTCT
*
32311291 ATAATTTTTATAATTTTCT
1 ATAATGTTTATAATTTTCT
32311310 AAATTTGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (21 bp):
ATAATGTTTATAATTTTCTCT
Found at i:32311302 original size:9 final size:9
Alignment explanation
Indices: 32311264--32311339 Score: 55
Period size: 9 Copynumber: 7.8 Consensus size: 9
32311254 TTCTTAATTT
*
32311264 ATTTTAATA
1 ATTTTTATA
*
32311273 ATGTTTATA
1 ATTTTTATA
32311282 ATTTTCTCTATA
1 A-TTT-T-TATA
32311294 ATTTTTATA
1 ATTTTTATA
32311303 ATTTTCTA-A
1 ATTTT-TATA
32311312 ATTTGTTATA
1 ATTT-TTATA
32311322 ATATTTTAATA
1 AT-TTTT-ATA
*
32311333 AATTTTA
1 ATTTTTA
32311340 ACTAAAAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 16
0.73 0.05 0.21
Matches are distributed among these distances:
9 25 0.45
10 15 0.27
11 10 0.18
12 5 0.09
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.58
Consensus pattern (9 bp):
ATTTTTATA
Found at i:32311304 original size:30 final size:28
Alignment explanation
Indices: 32311264--32311339 Score: 71
Period size: 29 Copynumber: 2.5 Consensus size: 28
32311254 TTCTTAATTT
* *
32311264 ATTTTAATAATGTTTATAATTTTCTCTATA
1 ATTTTTATAAT-TTTATAAATTTCT-TATA
* *
32311294 ATTTTTATAATTTTCTAAATTTGTTATA
1 ATTTTTATAATTTTATAAATTTCTTATA
32311322 ATATTTTAATAAATTTTA
1 AT-TTTT-AT-AATTTTA
32311340 ACTAAAAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
28 6 0.16
29 14 0.37
30 12 0.32
31 6 0.16
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.58
Consensus pattern (28 bp):
ATTTTTATAATTTTATAAATTTCTTATA
Found at i:32311320 original size:19 final size:20
Alignment explanation
Indices: 32311270--32311323 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
32311260 ATTTATTTTA
*
32311270 ATAATGTTTATAATTTTCTCT
1 ATAATTTTTATAA-TTTCTCT
32311291 ATAATTTTTATAATTT-TCT
1 ATAATTTTTATAATTTCTCT
32311310 A-AATTTGTTATAAT
1 ATAATTT-TTATAAT
32311324 ATTTTAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 5 0.16
19 11 0.35
20 3 0.10
21 12 0.39
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (20 bp):
ATAATTTTTATAATTTCTCT
Found at i:32311327 original size:21 final size:20
Alignment explanation
Indices: 32311276--32311338 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 20
32311266 TTTAATAATG
32311276 TTTATAAT-TTTCTCTATAATT
1 TTTATAATATTT-TCTA-AATT
32311297 TTTAT-A-ATTTTCTAAATT
1 TTTATAATATTTTCTAAATT
*
32311315 TGTTATAATATTTTAATAAATT
1 T-TTATAATATTTT-CTAAATT
32311337 TT
1 TT
32311339 AACTAAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
18 5 0.14
19 8 0.22
20 5 0.14
21 11 0.31
22 7 0.19
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTATAATATTTTCTAAATT
Found at i:32311669 original size:12 final size:13
Alignment explanation
Indices: 32311644--32311668 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32311634 AGTTTCTCAT
32311644 TACTTTTAAAAAA
1 TACTTTTAAAAAA
32311657 TACTTTTAAAAA
1 TACTTTTAAAAA
32311669 TTGATGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
TACTTTTAAAAAA
Found at i:32311802 original size:164 final size:165
Alignment explanation
Indices: 32311530--32311831 Score: 552
Period size: 164 Copynumber: 1.8 Consensus size: 165
32311520 ATTTCAAGGG
32311530 TTCAATTGATTGCTAACTTTTGACTAATGATTGAATTGATTTTTAATTATTTTATGAGAATTTTT
1 TTCAATTGATTGCTAACTTTTGACTAATGATTGAATTGATTTTTAATTATTTTATGAGAATTTTT
32311595 TAGTATTTAAACCAATTCAAAATTATCATAAGTAGGCTTAGTTTCTCATTACTTTTAAAAAATAC
66 TAGTATTTAAACCAATTCAAAATTATCATAAGTAGGCTTAGTTTCTCATTACTTTTAAAAAATAC
32311660 TTTTAAAAATTGATGCGTGAAAGTACTTATGAAAA
131 TTTTAAAAATTGATGCGTGAAAGTACTTATGAAAA
*
32311695 TTCAATTGATTGCTAACTTTTGACTAATGA-TGAATTGATTTTTAATTATTTTATGAGGATTTTT
1 TTCAATTGATTGCTAACTTTTGACTAATGATTGAATTGATTTTTAATTATTTTATGAGAATTTTT
* * **
32311759 TAGTATTTAAATCAATTCAAAATTATCATAAGTAGGCTTAGTTTCTCATTACTTTTGAAAAATGT
66 TAGTATTTAAACCAATTCAAAATTATCATAAGTAGGCTTAGTTTCTCATTACTTTTAAAAAATAC
32311824 TTTTAAAA
131 TTTTAAAA
32311832 GTTTAATTTA
Statistics
Matches: 132, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
164 102 0.77
165 30 0.23
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.45
Consensus pattern (165 bp):
TTCAATTGATTGCTAACTTTTGACTAATGATTGAATTGATTTTTAATTATTTTATGAGAATTTTT
TAGTATTTAAACCAATTCAAAATTATCATAAGTAGGCTTAGTTTCTCATTACTTTTAAAAAATAC
TTTTAAAAATTGATGCGTGAAAGTACTTATGAAAA
Found at i:32317811 original size:15 final size:15
Alignment explanation
Indices: 32317765--32317811 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
32317755 TTTAAATTTT
32317765 ATTT-TTTA-ATTAA
1 ATTTATTTATATTAA
*
32317778 ATTCTATTTATTTTAA
1 ATT-TATTTATATTAA
*
32317794 ATTTATTTATATTCA
1 ATTTATTTATATTAA
32317809 ATT
1 ATT
32317812 AACTTCGACT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 3 0.11
14 1 0.04
15 17 0.61
16 7 0.25
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTTATTTATATTAA
Found at i:32317868 original size:106 final size:107
Alignment explanation
Indices: 32317730--32318031 Score: 346
Period size: 106 Copynumber: 2.8 Consensus size: 107
32317720 TTTAAATTTG
* * * *
32317730 TATTTATTTTAAATAAGTT-TTTTGTTTTAAATTTTATTTTTTAATTAAATTCTATTTATTTTAA
1 TATTTATTTTAAATAATTTATTTTGCTTGAAATTGTATTTTTTAATTAAATTCTATTTATTTTAA
*
32317794 ATTTATTTATATT-CAATTAACTTCG-ACTTTTT-ATTAAATAA
66 ATTTATTT-TATTACAATTAAATT-GTACTTTTTAATTAAATAA
* * *
32317835 TATTTATTTTGAATAATTTATTTTGGTTGAAATTGTATTTTTTAATTAAATTCTATTTCTTTTAA
1 TATTTATTTTAAATAATTTATTTTGCTTGAAATTGTATTTTTTAATTAAATTCTATTTATTTTAA
* * **
32317900 ATTTAATTTTATTGC-TTTAAATTGTACTTTTTAATTAAATTT
66 ATTT-ATTTTATTACAATTAAATTGTACTTTTTAATTAAATAA
** * *
32317942 TATTT-TTAAAAAAATTAATTTATATTGCTTGAAATTGTATATTTTAATTAAATTCTATTTATTT
1 TATTTATT--TTAAA-TAATTTATTTTGCTTGAAATTGTATTTTTTAATTAAATTCTATTTATTT
* *
32318006 TAAATTAATTTTATTACAATAAAATT
63 TAAATTTATTTTATTACAATTAAATT
32318032 AAATTTAAAA
Statistics
Matches: 167, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
105 18 0.11
106 64 0.38
107 17 0.10
108 11 0.07
109 57 0.34
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (107 bp):
TATTTATTTTAAATAATTTATTTTGCTTGAAATTGTATTTTTTAATTAAATTCTATTTATTTTAA
ATTTATTTTATTACAATTAAATTGTACTTTTTAATTAAATAA
Found at i:32317902 original size:21 final size:21
Alignment explanation
Indices: 32317873--32317922 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
32317863 GAAATTGTAT
* *
32317873 TTTTTAATTAAATTCTATTTC
1 TTTTAAATTAAATTCTATTGC
* *
32317894 TTTTAAATTTAATTTTATTGC
1 TTTTAAATTAAATTCTATTGC
32317915 -TTTAAATT
1 TTTTAAATT
32317923 GTACTTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTAAATTAAATTCTATTGC
Found at i:32317931 original size:54 final size:54
Alignment explanation
Indices: 32317721--32318020 Score: 280
Period size: 54 Copynumber: 5.6 Consensus size: 54
32317711 ATAAAGCATT
* * * *
32317721 TTAAATTTGTATTTATTTTAAA-TAAGTTT-T-TTGTTTTAAATTTTATTTTTTAA
1 TTAAA-TTCTATTTATTTTAAATTAA-TTTATATTGCTTTAAATTGTACTTTTTAA
* * *
32317774 TTAAATTCTATTTATTTTAAATTTATTTATATT-CAATTAACTTCG-ACTTTTT-A
1 TTAAATTCTATTTATTTTAAATTAATTTATATTGC-TTTAAATT-GTACTTTTTAA
** * * * * *
32317827 TTAAATAATATTTATTTTGAA-TAATTTATTTTGGTTGAAATTGTATTTTTTAA
1 TTAAATTCTATTTATTTTAAATTAATTTATATTGCTTTAAATTGTACTTTTTAA
*
32317880 TTAAATTCTATTTCTTTTAAATTTAATTT-TATTGCTTTAAATTGTACTTTTTAA
1 TTAAATTCTATTTATTTTAAA-TTAATTTATATTGCTTTAAATTGTACTTTTTAA
* ** *
32317934 TTAAATTTTATTT-TTAAAAAAATTAATTTATATTGCTTGAAATTGTA-TATTTTAA
1 TTAAATTCTATTTATT--TTAAATTAATTTATATTGCTTTAAATTGTACT-TTTTAA
32317989 TTAAATTCTATTTATTTTAAATTAATTT-TATT
1 TTAAATTCTATTTATTTTAAATTAATTTATATT
32318021 ACAATAAAAT
Statistics
Matches: 200, Mismatches: 32, Indels: 30
0.76 0.12 0.11
Matches are distributed among these distances:
51 1 0.00
52 38 0.19
53 51 0.25
54 65 0.32
55 43 0.22
56 2 0.01
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (54 bp):
TTAAATTCTATTTATTTTAAATTAATTTATATTGCTTTAAATTGTACTTTTTAA
Found at i:32317949 original size:17 final size:18
Alignment explanation
Indices: 32317916--32317950 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
32317906 TTTTATTGCT
32317916 TTAAATTGTACTTTTTAA
1 TTAAATTGTACTTTTTAA
*
32317934 TTAAATTTTA-TTTTTAA
1 TTAAATTGTACTTTTTAA
32317951 AAAAATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (18 bp):
TTAAATTGTACTTTTTAA
Found at i:32321077 original size:37 final size:37
Alignment explanation
Indices: 32321027--32321106 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
32321017 ATTTTCGGAA
* *
32321027 TGCACCCAAGACTATCGTTGCATAAATATTCTTTAAT
1 TGCACCCAAGACTATCGCTGCATAAATATTCTTCAAT
* * *
32321064 TGCATCCAGGACTATCGCTGCATAAGTATTCTTCAAT
1 TGCACCCAAGACTATCGCTGCATAAATATTCTTCAAT
32321101 TGCACC
1 TGCACC
32321107 TAGGAATGTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33
Consensus pattern (37 bp):
TGCACCCAAGACTATCGCTGCATAAATATTCTTCAAT
Found at i:32321119 original size:37 final size:37
Alignment explanation
Indices: 32321039--32321119 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
32321029 CACCCAAGAC
* * *
32321039 TATCGTTGCATAAATATTCTTTAATTGCATCCAGGAC
1 TATCGCTGCATAAATATTCTTCAATTGCATCCAGGAA
*
32321076 TATCGCTGCATAAGTATTCTTCAATTGCA-CCTAGGAA
1 TATCGCTGCATAAATATTCTTCAATTGCATCC-AGGAA
*
32321113 TGTCGCT
1 TATCGCT
32321120 ACATGAACGT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
36 2 0.05
37 36 0.95
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (37 bp):
TATCGCTGCATAAATATTCTTCAATTGCATCCAGGAA
Found at i:32324638 original size:11 final size:10
Alignment explanation
Indices: 32324618--32324657 Score: 55
Period size: 11 Copynumber: 3.9 Consensus size: 10
32324608 TTAGTCGCAT
32324618 AAAA-AAAAG
1 AAAAGAAAAG
32324627 AAGAAGAAAAG
1 AA-AAGAAAAG
32324638 AAAAGAAAAG
1 AAAAGAAAAG
32324648 AAAAAGAAAA
1 -AAAAGAAAA
32324658 TATTTATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.07
10 10 0.36
11 16 0.57
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAG
Found at i:32324640 original size:5 final size:5
Alignment explanation
Indices: 32324618--32324657 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
32324608 TTAGTCGCAT
32324618 AAAA- AAAAG AAGAAG AAAAG AAAAG AAAAG AAAAAG AAAA
1 AAAAG AAAAG AA-AAG AAAAG AAAAG AAAAG -AAAAG AAAA
32324658 TATTTATATT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.12
5 19 0.58
6 10 0.30
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:32324643 original size:16 final size:16
Alignment explanation
Indices: 32324618--32324657 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
32324608 TTAGTCGCAT
32324618 AAAA-AAAAGAAGAAG-
1 AAAAGAAAAGAA-AAGA
32324633 AAAAGAAAAGAAAAGA
1 AAAAGAAAAGAAAAGA
32324649 AAAAGAAAA
1 AAAAGAAAA
32324658 TATTTATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAGAAAAGA
Found at i:32324646 original size:21 final size:20
Alignment explanation
Indices: 32324618--32324657 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
32324608 TTAGTCGCAT
*
32324618 AAAAAAAAGAAGAAGAAAAG
1 AAAAAAAAGAAAAAGAAAAG
32324638 AAAAGAAAAGAAAAAGAAAA
1 AAAA-AAAAGAAAAAGAAAA
32324658 TATTTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (20 bp):
AAAAAAAAGAAAAAGAAAAG
Found at i:32325210 original size:37 final size:37
Alignment explanation
Indices: 32325169--32325276 Score: 198
Period size: 37 Copynumber: 2.9 Consensus size: 37
32325159 CCCAAAACTG
32325169 TCGCTACATAAATATTCTTTAATTGCATCCAGGACTA
1 TCGCTACATAAATATTCTTTAATTGCATCCAGGACTA
32325206 TCGCTACATAAATATTCTTTAATTGCATCCAGGACTA
1 TCGCTACATAAATATTCTTTAATTGCATCCAGGACTA
* *
32325243 TCGCTACATAAGTATTCTTTAATTGCACCCAGGA
1 TCGCTACATAAATATTCTTTAATTGCATCCAGGA
32325277 ATGTCACTGC
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (37 bp):
TCGCTACATAAATATTCTTTAATTGCATCCAGGACTA
Found at i:32330561 original size:26 final size:27
Alignment explanation
Indices: 32330520--32330591 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 27
32330510 AGATCATTTT
*
32330520 ATGCAGCGAC-ACTTCTGGATAGGTTC
1 ATGCAGCGACAATTTCTGGATAGGTTC
* * *
32330546 ATGCATCGA-AATTTCTGAACAGGTTC
1 ATGCAGCGACAATTTCTGGATAGGTTC
*
32330572 CTGCAGCGACAATTT-TGGAT
1 ATGCAGCGACAATTTCTGGAT
32330592 GCATAACTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
26 31 0.86
27 5 0.14
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (27 bp):
ATGCAGCGACAATTTCTGGATAGGTTC
Found at i:32332701 original size:11 final size:11
Alignment explanation
Indices: 32332685--32332709 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32332675 GAGTCATGCA
32332685 CTTGATTGAGG
1 CTTGATTGAGG
32332696 CTTGATTGAGG
1 CTTGATTGAGG
32332707 CTT
1 CTT
32332710 TATTCTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.12, G:0.32, T:0.40
Consensus pattern (11 bp):
CTTGATTGAGG
Found at i:32338356 original size:24 final size:24
Alignment explanation
Indices: 32338324--32338379 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
32338314 TGTGTTTAAT
32338324 TTCAGGATCTAAGCCAACAACAAA
1 TTCAGGATCTAAGCCAACAACAAA
32338348 TTCAGGATCTAAGCCAACAACAAA
1 TTCAGGATCTAAGCCAACAACAAA
32338372 TTCAGGAT
1 TTCAGGAT
32338380 TGCTCCTGGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.43, C:0.23, G:0.14, T:0.20
Consensus pattern (24 bp):
TTCAGGATCTAAGCCAACAACAAA
Found at i:32341633 original size:39 final size:39
Alignment explanation
Indices: 32341581--32341670 Score: 110
Period size: 39 Copynumber: 2.3 Consensus size: 39
32341571 TCGGTCTAGT
* * * *
32341581 ATTACGGTTTTTACAGTGTCACCGTCAA-TTTAGTATTGT
1 ATTATGGTATTTACAGTGTCACCGT-AAGTTTAGTATCGC
* *
32341620 GTTATGGTATTTACAGTGTTACCGTAAGTTTAGTATCGC
1 ATTATGGTATTTACAGTGTCACCGTAAGTTTAGTATCGC
32341659 ATTATGGTATTT
1 ATTATGGTATTT
32341671 CAATGTTACT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
38 2 0.05
39 41 0.95
ACGTcount: A:0.23, C:0.12, G:0.20, T:0.44
Consensus pattern (39 bp):
ATTATGGTATTTACAGTGTCACCGTAAGTTTAGTATCGC
Found at i:32341693 original size:38 final size:39
Alignment explanation
Indices: 32341621--32341699 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 39
32341611 TAGTATTGTG
* *
32341621 TTATGGTATTTACAGTGTTACCGTAAGTTTAGTATCGCA
1 TTATGGTATTTACAATGTTACCGTAAGTTCAGTATCGCA
* * *
32341660 TTATGGTATTT-CAATGTTACTGTCAGTTCAGTATCTCA
1 TTATGGTATTTACAATGTTACCGTAAGTTCAGTATCGCA
32341698 TT
1 TT
32341700 GTAGTGGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
38 24 0.69
39 11 0.31
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.44
Consensus pattern (39 bp):
TTATGGTATTTACAATGTTACCGTAAGTTCAGTATCGCA
Found at i:32344931 original size:107 final size:107
Alignment explanation
Indices: 32344597--32344931 Score: 315
Period size: 109 Copynumber: 3.1 Consensus size: 107
32344587 ATCAGGCCTT
* * * *
32344597 GAGCTGGTGAATACTGAATGGATATTGTGTTCTGATGATATAAACCGTCACGATGGCTAAGATCC
1 GAGCGGGTGAATATTGAATGGATATTGTGTTCTGATGATACAAA-C-TTACGATGGCTAAGATCC
* ** * *
32344662 -TGCATATGTTACGGATTCTCAACAACTTGTGTGAGCAACATCGT
64 ATGCATACGTTGTGGATTCTC-ACAACTTGTGTGAGCAGCATCGA
* * ** *
32344706 GAGCGGGAGGATATTGAATGGATATTGTACTCTGATGATACACACTGTCACGATGGCTAAGATCT
1 GAGCGGGTGAATATTGAATGGATATTGTGTTCTGATGATACAAACT-T-ACGATGGCTAAGATC-
* *
32344771 CA--CATACGTCGTGGATTCTCGACAGCTTGTGTGAGCAGCATC-A
63 CATGCATACGTTGTGGATTCTC-ACAACTTGTGTGAGCAGCATCGA
** *
32344814 TGAGTC-GGTGAATATTGAATAAATATTGTGTTCTGATGATA-AAATCTTACGATGGCTGAGA-C
1 -GAG-CGGGTGAATATTGAATGGATATTGTGTTCTGATGATACAAA-CTTACGATGGCTAAGATC
* ** *
32344876 CATGCATACATTGTTTATTCTCATCATCTTGTGTGAGCAGCATCGA
63 CATGCATACGTTGTGGATTCTCA-CAACTTGTGTGAGCAGCATCGA
32344922 GAGCGGGTGA
1 GAGCGGGTGA
32344932 TATAGATCGT
Statistics
Matches: 184, Mismatches: 30, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
105 2 0.01
106 3 0.02
107 54 0.29
108 5 0.03
109 118 0.64
110 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (107 bp):
GAGCGGGTGAATATTGAATGGATATTGTGTTCTGATGATACAAACTTACGATGGCTAAGATCCAT
GCATACGTTGTGGATTCTCACAACTTGTGTGAGCAGCATCGA
Found at i:32363185 original size:17 final size:17
Alignment explanation
Indices: 32363163--32363199 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
32363153 ATGTGTAATT
*
32363163 CTGGAATTGTTTGAATG
1 CTGGAATTGTTTAAATG
32363180 CTGGAATTGTTTAAATG
1 CTGGAATTGTTTAAATG
32363197 CTG
1 CTG
32363200 ATGTGGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.08, G:0.27, T:0.41
Consensus pattern (17 bp):
CTGGAATTGTTTAAATG
Found at i:32367192 original size:14 final size:15
Alignment explanation
Indices: 32367168--32367197 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
32367158 AATATGTACC
32367168 TCAACGTTCTTTCCA
1 TCAACGTTCTTTCCA
32367183 TCAA-GTTCTTTCCA
1 TCAACGTTCTTTCCA
32367197 T
1 T
32367198 TTTGTCTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.43
Consensus pattern (15 bp):
TCAACGTTCTTTCCA
Found at i:32369474 original size:30 final size:30
Alignment explanation
Indices: 32369440--32369640 Score: 167
Period size: 30 Copynumber: 6.7 Consensus size: 30
32369430 AAACTAGGTT
*
32369440 AAATTTGAATTTTAGGAAAGTTCAAGGGTC
1 AAATTTGAATTTTTGGAAAGTTCAAGGGTC
* * * *
32369470 AAATTTGAATTTTTAGAAAGTTTAGGGGTT
1 AAATTTGAATTTTTGGAAAGTTCAAGGGTC
* * * *
32369500 AAATTGGAATTTTTGAAAATTTTAAGGGTC
1 AAATTTGAATTTTTGGAAAGTTCAAGGGTC
* * *
32369530 AAA-TTCAAGTTTGTGGAAAGTTC-AGGTGCC
1 AAATTTGAA-TTTTTGGAAAGTTCAAGG-GTC
* * *
32369560 AAATTTGAATTTTTGGAAAATTCAGGGGTA
1 AAATTTGAATTTTTGGAAAGTTCAAGGGTC
* *
32369590 AAACTTTG-ATTTTTGG-AAGTTCGAGGATC
1 AAA-TTTGAATTTTTGGAAAGTTCAAGGGTC
** *
32369619 AAATTAAAATTTTTGGATAGTT
1 AAATTTGAATTTTTGGAAAGTT
32369641 TGGGGGTTAA
Statistics
Matches: 132, Mismatches: 32, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
28 2 0.02
29 25 0.19
30 95 0.72
31 10 0.08
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (30 bp):
AAATTTGAATTTTTGGAAAGTTCAAGGGTC
Found at i:32370701 original size:79 final size:79
Alignment explanation
Indices: 32370529--32370941 Score: 363
Period size: 79 Copynumber: 5.2 Consensus size: 79
32370519 ATAGCTTTAG
* * * * * * *
32370529 GGGTAAAAGATTGGATTACTTCAATCTGCCCCATGGTCGGGGTAAGAGA-TCGATTGTCTTCTAT
1 GGGTAAAAGATTGGATTGCTTCAATCTACCCCATGGTCGAGGTAAAAGATTGGATGGTCTTCAAT
* *
32370593 TTGCCCTC-TAGTTA
66 CTGCCC-CATAGTCA
*
32370607 GGGTAAAAGATTGGATTGCTTCAATCTACCCCATGGTCGAGGTAAAAGATTGGATGGTTTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTACCCCATGGTCGAGGTAAAAGATTGGATGGTCTTCAAT
* *
32370672 CTTCCCTC-TAGTTA
66 CTGCCC-CATAGTCA
* * * * *
32370686 GGGTAAAAGATTGGATTGCTTCAATTTGCCCTATGGTCGGGGTAAAAGATTGGATGGTCTTCGAT
1 GGGTAAAAGATTGGATTGCTTCAATCTACCCCATGGTCGAGGTAAAAGATTGGATGGTCTTCAAT
* *
32370751 CTGCCCCATGGTCG
66 CTGCCCCATAGTCA
* * * *
32370765 GGGTAAGAGTTTGGATGTGGTCTTCAATCTACCCTC-TGGT-TAGGGTAAAAGATTGGATTG-CT
1 GGGTAAAAGATTGGAT-T-G-CTTCAATCTACCC-CATGGTCGA-GGTAAAAGATTGGATGGTCT
* *
32370827 TCAATCTGCCCCATGGTCG
61 TCAATCTGCCCCATAGTCA
* * ** * * * * *
32370846 GGGTAAAAGATTGGATGGTCTTCAATCTGCCCTTTGAT-TAGGGTAAAAGATTAGATGCTCTTCG
1 GGGTAAAAGATTGGATTG-CTTCAATCTACCCCATGGTCGA-GGTAAAAGATTGGATGGTCTTCA
* *
32370910 ATCTGCCCCATGGTCG
64 ATCTGCCCCATAGTCA
*
32370926 GGGTAAGAGATTGGAT
1 GGGTAAAAGATTGGAT
32370942 GTGGTGACTT
Statistics
Matches: 286, Mismatches: 40, Indels: 16
0.84 0.12 0.05
Matches are distributed among these distances:
78 46 0.16
79 138 0.48
80 36 0.13
81 35 0.12
82 31 0.11
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (79 bp):
GGGTAAAAGATTGGATTGCTTCAATCTACCCCATGGTCGAGGTAAAAGATTGGATGGTCTTCAAT
CTGCCCCATAGTCA
Found at i:32370816 original size:121 final size:119
Alignment explanation
Indices: 32370530--32370877 Score: 418
Period size: 121 Copynumber: 2.9 Consensus size: 119
32370520 TAGCTTTAGG
* * ** * * *
32370530 GGTAAAAGATTGGAT--TACTTCAATCTGCCC-CATGGTCGGGGTAAGAGA-TCGATTGTCTTCT
1 GGTAAAAGATTGGATGGT-CTTCAATCTACCCTC-TAGTTAGGGTAAAAGATTGGATTG-CTTCA
* * ** * *
32370591 ATTTGCCCTCTAGTTAGGGTAAAAGATTGGATTG-CTTCAATCTACCCCATGGTCGA
63 ATTTGCCCTATGGTCGGGGTAAAAGATTGGATGGTCTTCAATCTGCCCCATGGTCGA
* *
32370647 GGTAAAAGATTGGATGGTTTTCAATCTTCCCTCTAGTTAGGGTAAAAGATTGGATTGCTTCAATT
1 GGTAAAAGATTGGATGGTCTTCAATCTACCCTCTAGTTAGGGTAAAAGATTGGATTGCTTCAATT
* *
32370712 TGCCCTATGGTCGGGGTAAAAGATTGGATGGTCTTCGATCTGCCCCATGGTCGG
66 TGCCCTATGGTCGGGGTAAAAGATTGGATGGTCTTCAATCTGCCCCATGGTCGA
* * *
32370766 GGTAAGAGTTTGGATGTGGTCTTCAATCTACCCTCTGGTTAGGGTAAAAGATTGGATTGCTTCAA
1 GGTAAAAGATTGGA--TGGTCTTCAATCTACCCTCTAGTTAGGGTAAAAGATTGGATTGCTTCAA
* *
32370831 TCTGCCCCATGGTCGGGGTAAAAGATTGGATGGTCTTCAATCTGCCC
64 TTTGCCCTATGGTCGGGGTAAAAGATTGGATGGTCTTCAATCTGCCC
32370878 TTTGATTAGG
Statistics
Matches: 200, Mismatches: 24, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
117 15 0.08
118 56 0.28
119 39 0.19
121 90 0.45
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (119 bp):
GGTAAAAGATTGGATGGTCTTCAATCTACCCTCTAGTTAGGGTAAAAGATTGGATTGCTTCAATT
TGCCCTATGGTCGGGGTAAAAGATTGGATGGTCTTCAATCTGCCCCATGGTCGA
Found at i:32370908 original size:40 final size:40
Alignment explanation
Indices: 32370529--32370942 Score: 374
Period size: 40 Copynumber: 10.4 Consensus size: 40
32370519 ATAGCTTTAG
* *
32370529 GGGTAAAAGATTGGAT--TACTTCAATCTGCCCCATGGTCG
1 GGGTAAAAGATTGGATGGT-CTTCAATCTGCCCTATGGTCA
* * * * * * * *
32370568 GGGTAAGAGA-TCGATTGTCTTCTATTTGCCCTCTAGTTA
1 GGGTAAAAGATTGGATGGTCTTCAATCTGCCCTATGGTCA
* * *
32370607 GGGTAAAAGATTGGATTG-CTTCAATCTACCCCATGGTC-
1 GGGTAAAAGATTGGATGGTCTTCAATCTGCCCTATGGTCA
* * * * *
32370645 GAGGTAAAAGATTGGATGGTTTTCAATCTTCCCTCTAGTTA
1 G-GGTAAAAGATTGGATGGTCTTCAATCTGCCCTATGGTCA
* * *
32370686 GGGTAAAAGATTGGATTG-CTTCAATTTGCCCTATGGTCG
1 GGGTAAAAGATTGGATGGTCTTCAATCTGCCCTATGGTCA
* * *
32370725 GGGTAAAAGATTGGATGGTCTTCGATCTGCCCCATGGTCG
1 GGGTAAAAGATTGGATGGTCTTCAATCTGCCCTATGGTCA
* * * * *
32370765 GGGTAAGAGTTTGGATGTGGTCTTCAATCTACCCTCTGGTTA
1 GGGTAAAAGATTGGA--TGGTCTTCAATCTGCCCTATGGTCA
* * *
32370807 GGGTAAAAGATTGGATTG-CTTCAATCTGCCCCATGGTCG
1 GGGTAAAAGATTGGATGGTCTTCAATCTGCCCTATGGTCA
* * *
32370846 GGGTAAAAGATTGGATGGTCTTCAATCTGCCCTTTGATTA
1 GGGTAAAAGATTGGATGGTCTTCAATCTGCCCTATGGTCA
* * * * *
32370886 GGGTAAAAGATTAGATGCTCTTCGATCTGCCCCATGGTCG
1 GGGTAAAAGATTGGATGGTCTTCAATCTGCCCTATGGTCA
*
32370926 GGGTAAGAGATTGGATG
1 GGGTAAAAGATTGGATG
32370943 TGGTGACTTC
Statistics
Matches: 296, Mismatches: 69, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
38 5 0.02
39 125 0.42
40 133 0.45
41 1 0.00
42 32 0.11
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (40 bp):
GGGTAAAAGATTGGATGGTCTTCAATCTGCCCTATGGTCA
Found at i:32378020 original size:42 final size:42
Alignment explanation
Indices: 32377884--32378073 Score: 224
Period size: 43 Copynumber: 4.5 Consensus size: 42
32377874 TATGCTCTAT
* * * *
32377884 CGAGTCATAAGTCTTCCTTAAATCATATTATCATTCTCATCC
1 CGAGACATGAGTCTTCCTTTAATCATATTCTCATTCTCATCC
* *
32377926 CGAGACATGAGTCCTCCTTTAATCATAAATCTCATTCTCATCC
1 CGAGACATGAGTCTTCCTTTAATCAT-ATTCTCATTCTCATCC
*
32377969 CGAGACATGAGTCTTCCTTTAATCATATTCTAATTCTCA-CTC
1 CGAGACATGAGTCTTCCTTTAATCATATTCTCATTCTCATC-C
* * *
32378011 CGA-ATCATGAGTCTTCCATTT-ATACAAATTCTCATGCTCAACC
1 CGAGA-CATGAGTCTTCC-TTTAAT-CATATTCTCATTCTCATCC
32378054 CGAGACATGAGTCTTCCTTT
1 CGAGACATGAGTCTTCCTTT
32378074 TTATACATCA
Statistics
Matches: 129, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
41 2 0.02
42 54 0.42
43 71 0.55
44 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.35
Consensus pattern (42 bp):
CGAGACATGAGTCTTCCTTTAATCATATTCTCATTCTCATCC
Found at i:32378044 original size:85 final size:85
Alignment explanation
Indices: 32377884--32378073 Score: 235
Period size: 85 Copynumber: 2.2 Consensus size: 85
32377874 TATGCTCTAT
* * * *
32377884 CGAGTCATAAGTCTTCCTTAAATCATATTATCATTCTCATCCCGAGACATGAGTCCTCCTTTAAT
1 CGAGACATGAGTCTTCCTTTAATCATATTATAATTCTCATCCCGAGACATGAGTCCTCCTTTAAT
* *
32377949 CATAAATCTCATTCTCATCC
66 CATAAATCTCATGCTCAACC
* *
32377969 CGAGACATGAGTCTTCCTTTAATCATATTCTAATTCTCA-CTCCGA-ATCATGAGTCTTCCATTT
1 CGAGACATGAGTCTTCCTTTAATCATATTATAATTCTCATC-CCGAGA-CATGAGTCCTCC-TTT
*
32378032 -ATACA-AATTCTCATGCTCAACC
63 AAT-CATAAATCTCATGCTCAACC
32378054 CGAGACATGAGTCTTCCTTT
1 CGAGACATGAGTCTTCCTTT
32378074 TTATACATCA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
84 2 0.02
85 85 0.92
86 5 0.05
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.35
Consensus pattern (85 bp):
CGAGACATGAGTCTTCCTTTAATCATATTATAATTCTCATCCCGAGACATGAGTCCTCCTTTAAT
CATAAATCTCATGCTCAACC
Found at i:32391807 original size:20 final size:21
Alignment explanation
Indices: 32391771--32391820 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 21
32391761 ATTGGCATGG
*
32391771 TTTATATTAAGTGTAAATA-GA
1 TTTA-ATTAAGTGTAAAAATGA
32391792 TTTAATTAAGAT-TAAAAATGA
1 TTTAATTAAG-TGTAAAAATGA
32391813 -TTAATTAA
1 TTTAATTAA
32391821 AGCTTAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (21 bp):
TTTAATTAAGTGTAAAAATGA
Found at i:32394690 original size:30 final size:30
Alignment explanation
Indices: 32394624--32394801 Score: 150
Period size: 30 Copynumber: 6.1 Consensus size: 30
32394614 TGCAGGTTTG
* **
32394624 GGGTTAAAATGT-ATTTTT-AGAAGTTCGA
1 GGGTAAAAATGTAATTTTTGAGAAGTTTTA
* * *
32394652 GGGCAAAAATGTGATTTTTGATAAGTTTTA
1 GGGTAAAAATGTAATTTTTGAGAAGTTTTA
* * *
32394682 GGGAAAAAATGTAATTTCTGAGAAGTTTAA
1 GGGTAAAAATGTAATTTTTGAGAAGTTTTA
* *
32394712 GGGTAAAAATATAATTTTTAAGAAG-TTTA
1 GGGTAAAAATGTAATTTTTGAGAAGTTTTA
* * * *
32394741 GGGTCAAAATGTAATTTTGGAAAAGTTTGA
1 GGGTAAAAATGTAATTTTTGAGAAGTTTTA
* * * *
32394771 -GGTCAAAATATGATTTTTGAAAAG-TTTA
1 GGGTAAAAATGTAATTTTTGAGAAGTTTTA
32394799 GGG
1 GGG
32394802 ACCTACTAAA
Statistics
Matches: 121, Mismatches: 25, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
28 13 0.11
29 52 0.43
30 56 0.46
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.36
Consensus pattern (30 bp):
GGGTAAAAATGTAATTTTTGAGAAGTTTTA
Found at i:32394768 original size:59 final size:58
Alignment explanation
Indices: 32394651--32394802 Score: 164
Period size: 59 Copynumber: 2.6 Consensus size: 58
32394641 TAGAAGTTCG
* * * *
32394651 AGGGCAAAAATGTGATTTTTGATAAGTTTTAGGGAAAAAATGTAATTTCTGAGAAGTTTA
1 AGGGTAAAAATATGATTTTT-AAAAG-TTTAGGGAAAAAATGTAATTTCTGAAAAGTTTA
* ** *
32394711 AGGGTAAAAATATAATTTTTAAGAAGTTTAGGGTCAAAATGTAATTT-TGGAAAAGTTTG
1 AGGGTAAAAATATGATTTTTAA-AAGTTTAGGGAAAAAATGTAATTTCT-GAAAAGTTTA
*
32394770 A-GGTCAAAATATGATTTTTGAAAAGTTTAGGGA
1 AGGGTAAAAATATGATTTTT-AAAAGTTTAGGGA
32394803 CCTACTAAAC
Statistics
Matches: 78, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
58 27 0.35
59 31 0.40
60 20 0.26
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.35
Consensus pattern (58 bp):
AGGGTAAAAATATGATTTTTAAAAGTTTAGGGAAAAAATGTAATTTCTGAAAAGTTTA
Found at i:32397075 original size:39 final size:38
Alignment explanation
Indices: 32397032--32397600 Score: 263
Period size: 39 Copynumber: 14.6 Consensus size: 38
32397022 GCTGATGATG
*
32397032 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGCTGCA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGCTG-A
32397071 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTG-ATGG-TG-
1 ATCTGCCCCAGGCTCGGGGTAAGAGA-T--C-GAATGGCTGA
* * * *
32397110 ATTTGCCCTAGGCTCGGGGTAAAAGATCGAATGGTTGTA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGCTG-A
* * * * * * *
32397149 ATTTACCCCAAGCTCGAGGTAAGAGATTTG--TTGATGA
1 ATCTGCCCCAGGCTCGGGGTAAGAGA-TCGAATGGCTGA
* *
32397186 TGATCTACCCTAGGCTCGGGGTAAGAGATTGGCTG-ATGG-TG-
1 --ATCTGCCCCAGGCTCGGGGTAAGAGA-T--C-GAATGGCTGA
* * ** *
32397227 ATCTGCCCTAGGCTCGAGGTAAGAGATTAAATGGTTGCA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGCTG-A
* * *
32397266 ATTTGCCCCAGGCTTGGGGTAAGAGATTTGCTG-AT-GATG-
1 ATCTGCCCCAGGCTCGGGGTAAGAGA--T-C-GAATGGCTGA
* * * *
32397305 ATCTGCCACAGGCTCGGGGTAAAAGATCGAATGGTTATA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGCT-GA
* * * *
32397344 ATCTGCCCTAGGCTCGAGGTAAGAGATTGGATGGCTGTA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGCTG-A
* * *
32397383 ATCTGCCTCAGGGTCGGGGTAAAAGATCGAATGGCTGCA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGCTG-A
* * *
32397422 ATCTGCCCCAGGCTCGAGGTAATAGATTGATTGATGG-TG-
1 ATCTGCCCCAGGCTCGGGGTAAGAGATCGA---ATGGCTGA
* * * ** * * * *
32397461 ATCTGCCTCAGGGTTGGGAAAAAAGATCGGATGACTATA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGCT-GA
* *
32397500 ATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTG-ATGG-TG-
1 ATCTGCCCCAGGCTCGGGGTAAGAGA-T--C-GAATGGCTGA
* * * * *
32397539 ATCTACCCCAAGCTCGGGGTAAGAGATTGGATGGCTACA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGCT-GA
* *
32397578 ATCTG-CCCAAGCTCAGGGTAAGA
1 ATCTGCCCCAGGCTCGGGGTAAGA
32397601 AATTGGCTGA
Statistics
Matches: 405, Mismatches: 83, Indels: 85
0.71 0.14 0.15
Matches are distributed among these distances:
35 3 0.01
36 19 0.05
37 10 0.02
38 24 0.06
39 314 0.78
40 4 0.01
41 9 0.02
42 18 0.04
43 4 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.24
Consensus pattern (38 bp):
ATCTGCCCCAGGCTCGGGGTAAGAGATCGAATGGCTGA
Found at i:32397221 original size:117 final size:117
Alignment explanation
Indices: 32397071--32397568 Score: 459
Period size: 117 Copynumber: 4.3 Consensus size: 117
32397061 AATGGCTGCA
* *
32397071 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATTTGCCCTAGGCTCGGGGTAAAAGA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCTAGGCTCGAGGTAAAAGA
* * * *
32397136 TCGAATGGTTGTAATTTACCCCAAGCTCGAGGTAAGAGATTTGTTGATGATG
66 TCGAATGGCTGTAATCTGCCCCAAGCTCGAGGTAAGAGATTTGCTGATGATG
* * *
32397188 ATCTACCCTAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCTAGGCTCGAGGTAAGAGA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCTAGGCTCGAGGTAAAAGA
** * * * * * *
32397253 TTAAATGGTTGCAATTTGCCCCAGGCTTGGGGTAAGAGATTTGCTGATGATG
66 TCGAATGGCTGTAATCTGCCCCAAGCTCGAGGTAAGAGATTTGCTGATGATG
* * * ** * ** * *
32397305 ATCTGCCACAGGCTCGGGGTAAAAGATCGAATGGTTATAATCTGCCCTAGGCTCGAGGTAAGAGA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCTAGGCTCGAGGTAAAAGA
* * * * * * * *
32397370 TTGGATGGCTGTAATCTGCCTCAGGGTCGGGGTAAAAGA--T-C-GAATGGCTG
66 TCGAATGGCTGTAATCTGCCCCAAGCTCGAGGTAAGAGATTTGCTG-AT-GATG
* * ** * * *
32397420 CAATCTGCCCCAGGCTCGAGGTAATAGATTGATTGATGGTGATCTG-CCTCAGGGTTG-GGAAAA
1 --ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCT-AGGCTCGAGG-TAA
* * * * *
32397483 AAGATCGGATGACTATAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATGGTG
62 AAGATCGAATGGCTGTAATCTGCCCCAAGCTCGAGGTAAGAGATTTGCTGATGATG
* *
32397539 ATCTACCCCAAGCTCGGGGTAAGAGATTGG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGG
32397569 ATGGCTACAA
Statistics
Matches: 309, Mismatches: 62, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
113 1 0.00
114 3 0.01
115 4 0.01
116 5 0.02
117 289 0.94
119 3 0.01
120 3 0.01
121 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (117 bp):
ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCTAGGCTCGAGGTAAAAGA
TCGAATGGCTGTAATCTGCCCCAAGCTCGAGGTAAGAGATTTGCTGATGATG
Found at i:32397242 original size:78 final size:78
Alignment explanation
Indices: 32397010--32397643 Score: 376
Period size: 78 Copynumber: 8.1 Consensus size: 78
32397000 CCATGATTGG
* * *
32397010 GGTAAGAGATTGGCTGATGATGATCTGCCCCAGGCTCGGGGTAAAAGA-T--C-GAATGGCTGCA
1 GGTAAGAGATTGGATGATGATGATCTGCCCTAGGCTCGGGGTAAGAGATTGGCTG-ATGG-TG--
*
32397071 ATCTGCCCCAGGCTCGG
62 ATCTGCCCCAGGCTCGA
* * * * * ** * * * *
32397088 GGTAAGAGATTGGCTGATGGTGATTTGCCCTAGGCTCGGGGTAAAAGATCGAATGGTTGTAATTT
1 GGTAAGAGATTGGATGATGATGATCTGCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCT
* *
32397153 ACCCCAAGCTCGA
66 GCCCCAGGCTCGA
* * *
32397166 GGTAAGAGATTTGTTGATGATGATCTACCCTAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCT
1 GGTAAGAGATTGGATGATGATGATCTGCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCT
*
32397231 GCCCTAGGCTCGA
66 GCCCCAGGCTCGA
** * * * * * *
32397244 GGTAAGAGATTAAATG--GTTGCAATTTGCCCCAGGCTTGGGGTAAGAGATTTGCTGATGATGAT
1 GGTAAGAGATTGGATGATGATG--ATCTGCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGTGAT
* *
32397307 CTGCCACAGGCTCGG
64 CTGCCCCAGGCTCGA
* * * * * * * * * *
32397322 GGTAAAAGATCGAATGGTTATAATCTGCCCTAGGCTCGAGGTAAGAGATTGGATGGCT-GTAATC
1 GGTAAGAGATTGGATGATGATGATCTGCCCTAGGCTCGGGGTAAGAGATTGGCT-GATGGTGATC
* * *
32397386 TGCCTCAGGGTCGG
65 TGCCCCAGGCTCGA
* * * * * * * **
32397400 GGTAAAAGATCGAATG--GCTGCAATCTGCCCCAGGCTCGAGGTAATAGATTGATTGATGGTGAT
1 GGTAAGAGATTGGATGATGATG--ATCTGCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGTGAT
* * *
32397463 CTGCCTCAGGGTTG-
64 CTGCCCCAGGCTCGA
* * * * * * *
32397477 GGAAAAAAGATCGGATGACT-ATAATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATGGTGAT
1 GG-TAAGAGATTGGATGA-TGATGATCTGCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGTGAT
* * *
32397541 CTACCCCAAGCTCGG
64 CTGCCCCAGGCTCGA
* ** * * * *
32397556 GGTAAGAGATTGGATGGCT-ACAATCTGCCC-AAGCTCAGGGTAAGAAATTGGCTGATAGTGATC
1 GGTAAGAGATTGGAT-GATGATGATCTGCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGTGATC
* * *
32397619 TGCCTCAGGTTCGG
65 TGCCCCAGGCTCGA
*
32397633 GGTAAAAGATT
1 GGTAAGAGATT
32397644 AGAATCTTCA
Statistics
Matches: 443, Mismatches: 95, Indels: 37
0.77 0.17 0.06
Matches are distributed among these distances:
76 4 0.01
77 53 0.12
78 375 0.85
79 5 0.01
80 3 0.01
81 2 0.00
82 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (78 bp):
GGTAAGAGATTGGATGATGATGATCTGCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCT
GCCCCAGGCTCGA
Found at i:32397620 original size:38 final size:37
Alignment explanation
Indices: 32397500--32397622 Score: 122
Period size: 39 Copynumber: 3.2 Consensus size: 37
32397490 GATGACTATA
*
32397500 ATCTGCCCCAAGCTCGAGGTAAGAGATTGGCTGATGGTG
1 ATCTG-CCCAAGCTCG-GGTAAGAGATTGGCTGATAGTG
* * * **
32397539 ATCTACCCCAAGCTCGGGGTAAGAGATTGGATGGCTA-CA
1 ATCT-GCCCAAGCTC-GGGTAAGAGATTGGCT-GATAGTG
*
32397578 ATCTGCCCAAGCTCAGGGTAAGAAATTGGCTGATAGTG
1 ATCTGCCCAAGCTC-GGGTAAGAGATTGGCTGATAGTG
32397616 ATCTGCC
1 ATCTGCC
32397623 TCAGGTTCGG
Statistics
Matches: 67, Mismatches: 13, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
37 3 0.04
38 30 0.45
39 31 0.46
40 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (37 bp):
ATCTGCCCAAGCTCGGGTAAGAGATTGGCTGATAGTG
Done.